Citrus Sinensis ID: 006442
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 645 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LV93 | 692 | ABC transporter F family | yes | no | 0.953 | 0.888 | 0.794 | 0.0 | |
| Q9FIB4 | 678 | ABC transporter F family | no | no | 0.941 | 0.895 | 0.776 | 0.0 | |
| O05519 | 642 | Uncharacterized ABC trans | yes | no | 0.829 | 0.833 | 0.378 | 9e-99 | |
| P0A9U3 | 530 | Uncharacterized ABC trans | N/A | no | 0.792 | 0.964 | 0.333 | 5e-78 | |
| P0A9U4 | 530 | Uncharacterized ABC trans | yes | no | 0.792 | 0.964 | 0.333 | 5e-78 | |
| P0A9U5 | 530 | Uncharacterized ABC trans | N/A | no | 0.792 | 0.964 | 0.333 | 5e-78 | |
| O34512 | 518 | Uncharacterized ABC trans | no | no | 0.776 | 0.967 | 0.339 | 1e-74 | |
| P63389 | 637 | Uncharacterized ABC trans | N/A | no | 0.789 | 0.799 | 0.316 | 8e-71 | |
| P63390 | 637 | Uncharacterized ABC trans | N/A | no | 0.789 | 0.799 | 0.316 | 8e-71 | |
| P0A9W5 | 555 | Uncharacterized ABC trans | no | no | 0.761 | 0.884 | 0.329 | 2e-70 |
| >sp|Q9LV93|AB5F_ARATH ABC transporter F family member 5 OS=Arabidopsis thaliana GN=ABCF5 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 989 bits (2557), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/619 (79%), Positives = 550/619 (88%), Gaps = 4/619 (0%)
Query: 9 NLRSSFFSTLQPRFTPFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKSIAKAQSDVES 68
+LRS+FF+ L R +P S +S++ ++ I QVS ++E S+ + Q ++ES
Sbjct: 11 DLRSTFFTGL--RTSPIPSNFIKISSISNPRRDISTIRAQVSTISLET-SVKQRQDEIES 67
Query: 69 LFSSSADEFE-NKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVG 127
LFS + + ++K + K S GAS ISSGVKLENI KSYKGVTVLKDVTWEVK+GEKVG
Sbjct: 68 LFSKQPSQQDSDRKRNGKSSKNGASGISSGVKLENIRKSYKGVTVLKDVTWEVKRGEKVG 127
Query: 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK 187
LVGVNGAGKTTQLRII GQEEPDSGNVIKAK NMK+AFLSQEFEVSMS+TVREEFM+AFK
Sbjct: 128 LVGVNGAGKTTQLRIITGQEEPDSGNVIKAKPNMKVAFLSQEFEVSMSKTVREEFMTAFK 187
Query: 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247
EEMEI KLE+VQKA+E +VDD+DLMGRLLDEFDLLQR+AQAVNLD++DAK+SKLMPELG
Sbjct: 188 EEMEITEKLEKVQKAIEGSVDDLDLMGRLLDEFDLLQRRAQAVNLDSVDAKISKLMPELG 247
Query: 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDV 307
F +D DRLVASFS GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL KQDV
Sbjct: 248 FAPEDADRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLQKQDV 307
Query: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIE 367
PMVIISHDRAFLDQLCTKIVETEMGVSRT+EGNYSQYV+ KA WIE+Q AAWEKQQ++I+
Sbjct: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTFEGNYSQYVISKAEWIETQNAAWEKQQKDID 367
Query: 368 QTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTI 427
TKDLI RLGAGANSGRAS+AEKKLE+LQE+E IEKPFQRKQMKIRFPERG SGRSVV +
Sbjct: 368 STKDLIARLGAGANSGRASTAEKKLEKLQEQELIEKPFQRKQMKIRFPERGTSGRSVVNV 427
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487
KN++FG+ED++LF +ANL+IERGEK AI+GPNGCGKSTLLKLIMGLEKP GEV+LGEHN
Sbjct: 428 KNIDFGFEDKMLFKKANLSIERGEKIAILGPNGCGKSTLLKLIMGLEKPVKGEVILGEHN 487
Query: 488 VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
VLPNYFEQNQAE LDLDKTVLETV EAAEDWR DDIKGLLGRCNFKADMLDRKVSLLSGG
Sbjct: 488 VLPNYFEQNQAEVLDLDKTVLETVCEAAEDWRSDDIKGLLGRCNFKADMLDRKVSLLSGG 547
Query: 548 EKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIV 607
EKARLAFCKFMV PSTLLVLDEPTNHLDIPSKEMLEEAI+EY+GTVI VSHDRYF+KQIV
Sbjct: 548 EKARLAFCKFMVTPSTLLVLDEPTNHLDIPSKEMLEEAINEYQGTVIAVSHDRYFIKQIV 607
Query: 608 NRVVEVKGSNLQDYAGDYN 626
NRV+EV+ L+DYAGDYN
Sbjct: 608 NRVIEVEDGCLEDYAGDYN 626
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIB4|AB2F_ARATH ABC transporter F family member 2 OS=Arabidopsis thaliana GN=ABCF2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 969 bits (2506), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/631 (77%), Positives = 543/631 (86%), Gaps = 24/631 (3%)
Query: 1 MDVTTT--TTNLRSSFFSTLQPRFTPFASAKSFTNSLNFTKKQR---PRITCQVSAATVE 55
M +TT + NLRS+FF T FT L+ R P I VSAA+
Sbjct: 1 MVLTTNLYSLNLRSTFFFT-----NTITCPTLFTFKLSSVSNPRRVFPNIRAHVSAAS-- 53
Query: 56 KKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKD 115
+ S++ESL S+ ++K +KQSN GASSISSGV+LENISKSY+G+TVLKD
Sbjct: 54 ------SNSELESLLST------DRKLISKQSNNGASSISSGVRLENISKSYEGITVLKD 101
Query: 116 VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175
VTWEVKKGEKVGL+GVNGAGKTTQLRII GQEEPDSGNVI AK N+K+AFLSQEFEVSM
Sbjct: 102 VTWEVKKGEKVGLIGVNGAGKTTQLRIITGQEEPDSGNVIWAKPNLKVAFLSQEFEVSMG 161
Query: 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235
+TV+EEFM FKEEMEIA KLE +QKA+E AVDD++LMG+LLDEFDLLQR+AQ V+LD++
Sbjct: 162 KTVKEEFMCTFKEEMEIARKLENLQKAIEEAVDDLELMGKLLDEFDLLQRRAQEVDLDSI 221
Query: 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTI 295
AK+SKLM ELGF ++D DRLVASFSSGWQMRMSLGKILLQ+PDLLLLDEPTNHLDLDTI
Sbjct: 222 HAKISKLMSELGFVSEDADRLVASFSSGWQMRMSLGKILLQNPDLLLLDEPTNHLDLDTI 281
Query: 296 EWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQ 355
EWLEGYL KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT++GNYSQYV+ KA +E+Q
Sbjct: 282 EWLEGYLIKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTFDGNYSQYVISKAELVEAQ 341
Query: 356 YAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFP 415
YAAWEKQQ+EIE TKDLI+RL AGANSGRASSAEKKLE+LQEEE IEKPFQRKQMKIRFP
Sbjct: 342 YAAWEKQQKEIEATKDLISRLSAGANSGRASSAEKKLEKLQEEELIEKPFQRKQMKIRFP 401
Query: 416 ERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475
E G SGRSVVT+KNL FG++D++LFN+ANL IERGEK AIIGPNGCGKSTLLKLIMGLEK
Sbjct: 402 ECGLSGRSVVTVKNLVFGFDDKMLFNKANLAIERGEKVAIIGPNGCGKSTLLKLIMGLEK 461
Query: 476 PRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD 535
P GEV+LGEHNVLPNYFEQNQAEA DLDKTV+ETV EAA DWRIDDIK LLGRCNFKAD
Sbjct: 462 PMRGEVILGEHNVLPNYFEQNQAEAQDLDKTVIETVVEAAVDWRIDDIKALLGRCNFKAD 521
Query: 536 MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVIT 595
MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI+EYKGTVIT
Sbjct: 522 MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAINEYKGTVIT 581
Query: 596 VSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626
VSHDRYF+KQIVNRV+EV+ L DYAGDYN
Sbjct: 582 VSHDRYFIKQIVNRVIEVRDGGLMDYAGDYN 612
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O05519|YDIF_BACSU Uncharacterized ABC transporter ATP-binding protein YdiF OS=Bacillus subtilis (strain 168) GN=ydiF PE=3 SV=2 | Back alignment and function description |
|---|
Score = 361 bits (927), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 208/550 (37%), Positives = 323/550 (58%), Gaps = 15/550 (2%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+++ +SKS+ T+L ++ EV+ +++ +VG NGAGK+T L+IIAGQ + G +IK
Sbjct: 4 LQVNQLSKSFGADTILNNIKLEVRNRDRIAIVGRNGAGKSTLLKIIAGQLSYEKGEIIKP 63
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES--AVDDMDLMGR 215
K ++ + +L+Q + T++EE ++ F +E+ +A+E A D +
Sbjct: 64 K-DITMGYLAQHTGLDSKLTIKEELLTVFDH----LKAMEKEMRAMEEKMAAADPGELES 118
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
++ +D LQ++ + +A V ++ LGF+ D V S S G + R++LGK+LL
Sbjct: 119 IMKTYDRLQQEFKDKGGYQYEADVRSVLHGLGFSHFDDSTQVQSLSGGQKTRLALGKLLL 178
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335
PDLL+LDEPTNHLD+DT+ WLE YL ++I+SHDR FLD++ ++ E S+
Sbjct: 179 TQPDLLILDEPTNHLDIDTLTWLEHYLQGYSGAILIVSHDRYFLDKVVNQVYEVSRAESK 238
Query: 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINR-LGAGANSGRASSAEKKLER 394
Y GNYS Y+ +KAA E +EKQQ EI + +D ++R L + + RA S K+LER
Sbjct: 239 KYHGNYSAYLDQKAAQYEKDLKMYEKQQDEIAKLQDFVDRNLARASTTKRAQSRRKQLER 298
Query: 395 LQEEEQIEKPF-QRKQMKIRFPERGRSGRSVVTIKNLEFGYEDR-LLFNRANLTIERGEK 452
+ + + KP K F +SG V+ +++L YE++ L + + RGE
Sbjct: 299 M---DVMSKPLGDEKSANFHFDITKQSGNEVLRVQDLTISYENQPPLLTEVSFMLTRGES 355
Query: 453 TAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVA 512
A++GPNG GKSTLLK ++ KP G + G NV Y++Q QAE L K VL+ +
Sbjct: 356 AALVGPNGIGKSTLLKTLIDTLKPDQGTISYGS-NVSVGYYDQEQAE-LTSSKRVLDELW 413
Query: 513 EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572
+ +I+ LG F D + + V LSGGEKARLA K M++ + L+LDEPTN
Sbjct: 414 DEYPGLPEKEIRTCLGNFLFSGDDVLKPVHSLSGGEKARLALAKLMLQKANFLILDEPTN 473
Query: 573 HLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSLW 632
HLD+ SKE+LE A+ +Y GT++ VSHDRYF+ +I RV+E+ S++++Y GDY+
Sbjct: 474 HLDLDSKEVLENALIDYPGTLLFVSHDRYFINRIATRVLELSSSHIEEYLGDYDYYTEKK 533
Query: 633 FLTIEVSKIN 642
+E+ K+N
Sbjct: 534 TEQLELEKMN 543
|
Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|P0A9U3|YBIT_ECOLI Uncharacterized ABC transporter ATP-binding protein YbiT OS=Escherichia coli (strain K12) GN=ybiT PE=3 SV=1 | Back alignment and function description |
|---|
Score = 292 bits (748), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 176/528 (33%), Positives = 298/528 (56%), Gaps = 17/528 (3%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
N++ + + ++++ + G + GL+G NG+GK+T ++I+ G EP GNV N
Sbjct: 6 NVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNV-SLDPNE 64
Query: 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
+I L Q+ TV + + KE E+ + +R+ E + +D G + +
Sbjct: 65 RIGKLRQDQFAFEEFTVLDTVIMGHKELWEVKQERDRIYALPEMSEED----GYKVAD-- 118
Query: 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLL 281
L+ K ++ + +A+ +L+ +G + ++ + GW++R+ L + L DPD+L
Sbjct: 119 -LEVKYGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGWKLRVLLAQALFADPDIL 177
Query: 282 LLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNY 341
LLDEPTN+LD+DTI WLE L ++D M+IISHDR FL+ +CT + + + G R Y GNY
Sbjct: 178 LLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMVCTHMADLDYGELRVYPGNY 237
Query: 342 SQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGR-ASSAEKKLERLQEEEQ 400
+Y+ E A K++ +I + + ++R A A+ R A+S +++++++ EE
Sbjct: 238 DEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKSRQATSRARQIDKIKLEEV 297
Query: 401 IEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNG 460
K R+ IRF + + R+ + ++ L G+++ LF NL +E GEK A++G NG
Sbjct: 298 --KASSRQNPFIRFEQDKKLFRNALEVEGLTKGFDNGPLFKNLNLLLEVGEKLAVLGTNG 355
Query: 461 CGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRI 520
GKSTLLK ++G +P G V E N Y+ Q+ + D TV E +++ ++
Sbjct: 356 VGKSTLLKTLVGDLQPDSGTVKWSE-NARIGYYAQDHEYEFENDLTVFEWMSQWKQEG-- 412
Query: 521 DD---IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
DD ++ +LGR F D + + +LSGGEK R+ F K M++ +L++DEPTNHLD+
Sbjct: 413 DDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFGKLMMQKPNILIMDEPTNHLDME 472
Query: 578 SKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDY 625
S E L A+ Y+GT+I VSHDR FV + R++E+ + D++G+Y
Sbjct: 473 SIESLNMALELYQGTLIFVSHDREFVSSLATRILEITPERVIDFSGNY 520
|
Escherichia coli (strain K12) (taxid: 83333) |
| >sp|P0A9U4|YBIT_ECOL6 Uncharacterized ABC transporter ATP-binding protein YbiT OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ybiT PE=3 SV=1 | Back alignment and function description |
|---|
Score = 292 bits (748), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 176/528 (33%), Positives = 298/528 (56%), Gaps = 17/528 (3%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
N++ + + ++++ + G + GL+G NG+GK+T ++I+ G EP GNV N
Sbjct: 6 NVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNV-SLDPNE 64
Query: 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
+I L Q+ TV + + KE E+ + +R+ E + +D G + +
Sbjct: 65 RIGKLRQDQFAFEEFTVLDTVIMGHKELWEVKQERDRIYALPEMSEED----GYKVAD-- 118
Query: 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLL 281
L+ K ++ + +A+ +L+ +G + ++ + GW++R+ L + L DPD+L
Sbjct: 119 -LEVKYGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGWKLRVLLAQALFADPDIL 177
Query: 282 LLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNY 341
LLDEPTN+LD+DTI WLE L ++D M+IISHDR FL+ +CT + + + G R Y GNY
Sbjct: 178 LLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMVCTHMADLDYGELRVYPGNY 237
Query: 342 SQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGR-ASSAEKKLERLQEEEQ 400
+Y+ E A K++ +I + + ++R A A+ R A+S +++++++ EE
Sbjct: 238 DEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKSRQATSRARQIDKIKLEEV 297
Query: 401 IEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNG 460
K R+ IRF + + R+ + ++ L G+++ LF NL +E GEK A++G NG
Sbjct: 298 --KASSRQNPFIRFEQDKKLFRNALEVEGLTKGFDNGPLFKNLNLLLEVGEKLAVLGTNG 355
Query: 461 CGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRI 520
GKSTLLK ++G +P G V E N Y+ Q+ + D TV E +++ ++
Sbjct: 356 VGKSTLLKTLVGDLQPDSGTVKWSE-NARIGYYAQDHEYEFENDLTVFEWMSQWKQEG-- 412
Query: 521 DD---IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
DD ++ +LGR F D + + +LSGGEK R+ F K M++ +L++DEPTNHLD+
Sbjct: 413 DDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFGKLMMQKPNILIMDEPTNHLDME 472
Query: 578 SKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDY 625
S E L A+ Y+GT+I VSHDR FV + R++E+ + D++G+Y
Sbjct: 473 SIESLNMALELYQGTLIFVSHDREFVSSLATRILEITPERVIDFSGNY 520
|
Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310) |
| >sp|P0A9U5|YBIT_ECO57 Uncharacterized ABC transporter ATP-binding protein YbiT OS=Escherichia coli O157:H7 GN=ybiT PE=3 SV=1 | Back alignment and function description |
|---|
Score = 292 bits (748), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 176/528 (33%), Positives = 298/528 (56%), Gaps = 17/528 (3%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
N++ + + ++++ + G + GL+G NG+GK+T ++I+ G EP GNV N
Sbjct: 6 NVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNV-SLDPNE 64
Query: 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
+I L Q+ TV + + KE E+ + +R+ E + +D G + +
Sbjct: 65 RIGKLRQDQFAFEEFTVLDTVIMGHKELWEVKQERDRIYALPEMSEED----GYKVAD-- 118
Query: 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLL 281
L+ K ++ + +A+ +L+ +G + ++ + GW++R+ L + L DPD+L
Sbjct: 119 -LEVKYGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGWKLRVLLAQALFADPDIL 177
Query: 282 LLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNY 341
LLDEPTN+LD+DTI WLE L ++D M+IISHDR FL+ +CT + + + G R Y GNY
Sbjct: 178 LLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMVCTHMADLDYGELRVYPGNY 237
Query: 342 SQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGR-ASSAEKKLERLQEEEQ 400
+Y+ E A K++ +I + + ++R A A+ R A+S +++++++ EE
Sbjct: 238 DEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKSRQATSRARQIDKIKLEEV 297
Query: 401 IEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNG 460
K R+ IRF + + R+ + ++ L G+++ LF NL +E GEK A++G NG
Sbjct: 298 --KASSRQNPFIRFEQDKKLFRNALEVEGLTKGFDNGPLFKNLNLLLEVGEKLAVLGTNG 355
Query: 461 CGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRI 520
GKSTLLK ++G +P G V E N Y+ Q+ + D TV E +++ ++
Sbjct: 356 VGKSTLLKTLVGDLQPDSGTVKWSE-NARIGYYAQDHEYEFENDLTVFEWMSQWKQEG-- 412
Query: 521 DD---IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
DD ++ +LGR F D + + +LSGGEK R+ F K M++ +L++DEPTNHLD+
Sbjct: 413 DDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFGKLMMQKPNILIMDEPTNHLDME 472
Query: 578 SKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDY 625
S E L A+ Y+GT+I VSHDR FV + R++E+ + D++G+Y
Sbjct: 473 SIESLNMALELYQGTLIFVSHDREFVSSLATRILEITPERVIDFSGNY 520
|
Escherichia coli O157:H7 (taxid: 83334) |
| >sp|O34512|YFMM_BACSU Uncharacterized ABC transporter ATP-binding protein YfmM OS=Bacillus subtilis (strain 168) GN=yfmM PE=3 SV=2 | Back alignment and function description |
|---|
Score = 281 bits (719), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 174/512 (33%), Positives = 285/512 (55%), Gaps = 11/512 (2%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
S + ++++S + + +V++ + KGE VGL+G NG GK+T + II G+ EPD G V
Sbjct: 2 SILSVKDLSHGFGDRAIFNNVSFRLLKGEHVGLIGANGEGKSTFMNIITGKLEPDEGKVE 61
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
+K N+++ +L Q + +++R+ AF + ++ + + A D D + +
Sbjct: 62 WSK-NVRVGYLDQHTVLEKGKSIRDVLKDAFHYLFAMEEEMNEIYNKMGEA--DPDELEK 118
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
LL+E ++Q + +D+KV ++ LG + +R V S G + ++ L K+LL
Sbjct: 119 LLEEVGVIQDALTNNDFYVIDSKVEEIARGLGLSDIGLERDVTDLSGGQRTKVLLAKLLL 178
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335
+ P++LLLDEPTN+LD IEWL+ YL + + ++ISHD FL+ + I E
Sbjct: 179 EKPEILLLDEPTNYLDEQHIEWLKRYLQEYENAFILISHDIPFLNSVINLIYHVENQELT 238
Query: 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANS-GRASSAEKKLER 394
Y G+Y Q++ + AA++KQQ+E+ + KD + R A ++ A S +KKL++
Sbjct: 239 RYVGDYHQFMEVYEVKKQQLEAAYKKQQQEVAELKDFVARNKARVSTRNMAMSRQKKLDK 298
Query: 395 LQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTA 454
+ + IE ++ + + F SG+ + K+L GY D L NL +ERG+K A
Sbjct: 299 M---DMIELAAEKPKPEFHFKPARTSGKLIFETKDLVIGY-DSPLSRPLNLRMERGQKIA 354
Query: 455 IIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA 514
+ G NG GK+TLLK ++G +P G V GEH + YFEQ E + T +E V
Sbjct: 355 LYGANGIGKTTLLKSLLGEIQPLEGSVERGEH-IYTGYFEQEVKET--NNNTCIEEVWSE 411
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
+ +I+ L +C ++ +VS+LSGGEKA++ CK + + LLVLDEPTNHL
Sbjct: 412 FPSYTQYEIRAALAKCGLTTKHIESRVSVLSGGEKAKVRLCKLINSETNLLVLDEPTNHL 471
Query: 575 DIPSKEMLEEAISEYKGTVITVSHDRYFVKQI 606
D +KE L+ A+ EYKG+++ +SH+ F I
Sbjct: 472 DADAKEELKRALKEYKGSILLISHEPDFYMDI 503
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|P63389|YHES_ECOLI Uncharacterized ABC transporter ATP-binding protein YheS OS=Escherichia coli (strain K12) GN=yheS PE=1 SV=1 | Back alignment and function description |
|---|
Score = 268 bits (686), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 169/534 (31%), Positives = 283/534 (52%), Gaps = 25/534 (4%)
Query: 108 KGVTVLKD-VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFL 166
+GV VL D T + G+KVGLVG NG GK+T L ++ + D G+ S ++A++
Sbjct: 11 RGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGS-WQLAWV 69
Query: 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRK 226
+QE ++ + E + +E ++ +L + +D + + + D
Sbjct: 70 NQETP-ALPQAALEYVIDGDREYRQLEAQLHDANER-----NDGHAIATIHGKLD----- 118
Query: 227 AQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEP 286
A++ ++ ++ + L+ LGF+ + +R V+ FS GW+MR++L + L+ DLLLLDEP
Sbjct: 119 --AIDAWSIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEP 176
Query: 287 TNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346
TNHLDLD + WLE +L +++ISHDR FLD + KI+ E Y GNYS + +
Sbjct: 177 TNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSMFEYTGNYSSFEV 236
Query: 347 EKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGR-ASSAEKKLERLQ--EEEQIEK 403
++A + Q A +E QQ + + I+R A A + A S K LER++ ++
Sbjct: 237 QRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDN 296
Query: 404 PFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGK 463
PF + R PE ++ ++ + GY DR++ + L + G + ++G NG GK
Sbjct: 297 PF---RFSFRAPE--SLPNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGK 351
Query: 464 STLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI 523
STL+KL+ G P GE+ L + + YF Q+Q E L D++ ++ +A A +
Sbjct: 352 STLIKLLAGELAPVSGEIGLAK-GIKLGYFAQHQLEYLRADESPIQHLARLAPQELEQKL 410
Query: 524 KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583
+ LG F+ D + + SGGEKARL + + LL+LDEPTNHLD+ ++ L
Sbjct: 411 RDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALT 470
Query: 584 EAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSLWFLTIE 637
EA+ E++G ++ VSHDR+ ++ + + V ++ + GD Q W ++
Sbjct: 471 EALIEFEGALVVVSHDRHLLRSTTDDLYLVHDRKVEPFDGDLEDYQQ-WLSDVQ 523
|
Escherichia coli (strain K12) (taxid: 83333) |
| >sp|P63390|YHES_ECO57 Uncharacterized ABC transporter ATP-binding protein YheS OS=Escherichia coli O157:H7 GN=yheS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 268 bits (686), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 169/534 (31%), Positives = 283/534 (52%), Gaps = 25/534 (4%)
Query: 108 KGVTVLKD-VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFL 166
+GV VL D T + G+KVGLVG NG GK+T L ++ + D G+ S ++A++
Sbjct: 11 RGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGS-WQLAWV 69
Query: 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRK 226
+QE ++ + E + +E ++ +L + +D + + + D
Sbjct: 70 NQETP-ALPQAALEYVIDGDREYRQLEAQLHDANER-----NDGHAIATIHGKLD----- 118
Query: 227 AQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEP 286
A++ ++ ++ + L+ LGF+ + +R V+ FS GW+MR++L + L+ DLLLLDEP
Sbjct: 119 --AIDAWSIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEP 176
Query: 287 TNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346
TNHLDLD + WLE +L +++ISHDR FLD + KI+ E Y GNYS + +
Sbjct: 177 TNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSMFEYTGNYSSFEV 236
Query: 347 EKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGR-ASSAEKKLERLQ--EEEQIEK 403
++A + Q A +E QQ + + I+R A A + A S K LER++ ++
Sbjct: 237 QRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDN 296
Query: 404 PFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGK 463
PF + R PE ++ ++ + GY DR++ + L + G + ++G NG GK
Sbjct: 297 PF---RFSFRAPE--SLPNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGK 351
Query: 464 STLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI 523
STL+KL+ G P GE+ L + + YF Q+Q E L D++ ++ +A A +
Sbjct: 352 STLIKLLAGELAPVSGEIGLAK-GIKLGYFAQHQLEYLRADESPIQHLARLAPQELEQKL 410
Query: 524 KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583
+ LG F+ D + + SGGEKARL + + LL+LDEPTNHLD+ ++ L
Sbjct: 411 RDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALT 470
Query: 584 EAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSLWFLTIE 637
EA+ E++G ++ VSHDR+ ++ + + V ++ + GD Q W ++
Sbjct: 471 EALIEFEGALVVVSHDRHLLRSTTDDLYLVHDRKVEPFDGDLEDYQQ-WLSDVQ 523
|
Escherichia coli O157:H7 (taxid: 83334) |
| >sp|P0A9W5|YJJK_SHIFL Uncharacterized ABC transporter ATP-binding protein YjjK OS=Shigella flexneri GN=yjjK PE=3 SV=2 | Back alignment and function description |
|---|
Score = 267 bits (683), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 167/507 (32%), Positives = 275/507 (54%), Gaps = 16/507 (3%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171
+LK+++ G K+G++G+NGAGK+T LRI+AG ++ G + + ++KI +L QE +
Sbjct: 21 ILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDKDIEGEA-RPQPDIKIGYLPQEPQ 79
Query: 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231
++ TVRE A E + +L+ V D D +L E L+ QA +
Sbjct: 80 LNPEHTVRESIEEAVSEVVNALKRLDEVYALYADPDADFD---KLAAEQGRLEEIIQAHD 136
Query: 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
L+ ++ + L D D +A+ S G + R++L ++LL+ PD+LLLDEPTNHLD
Sbjct: 137 GHNLNVQLERAADALRLP--DWDAKIANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 194
Query: 292 LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAW 351
+++ WLE +L + +V I+HDR FLD + I+E + G +EGNYS ++ +K
Sbjct: 195 AESVAWLERFLHDFEGTVVAITHDRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKDQR 254
Query: 352 IESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMK 411
+ + + +++ IE+ + + + GR S + +L R +E E + + +
Sbjct: 255 LAQEASQEAARRKSIEKELEWVRQ----GTKGRQSKGKARLARFEELNSTEYQKRNETNE 310
Query: 412 IRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471
+ P R G V+ + NL Y DRLL + + +I +G IIGPNG GKSTL ++I
Sbjct: 311 LFIPPGPRLGDKVLEVSNLRKSYGDRLLIDDLSFSIPKGAIVGIIGPNGAGKSTLFRMIS 370
Query: 472 GLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI----KGLL 527
G E+P G + LGE L + +++D KTV E V+ + +I + + +
Sbjct: 371 GQEQPDSGTITLGETVKLASV--DQFRDSMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYV 428
Query: 528 GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAIS 587
GR NFK ++V LSGGE+ RL K + +L+LDEPTN LDI + LE A+
Sbjct: 429 GRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVGGNMLLLDEPTNDLDIETLRALENALL 488
Query: 588 EYKGTVITVSHDRYFVKQIVNRVVEVK 614
E+ G + +SHDR+F+ +I +++ +
Sbjct: 489 EFPGCAMVISHDRWFLDRIATHILDYQ 515
|
Shigella flexneri (taxid: 623) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 645 | ||||||
| 255576683 | 640 | abc transporter, putative [Ricinus commu | 0.967 | 0.975 | 0.810 | 0.0 | |
| 224081252 | 722 | ABC transporter family protein [Populus | 0.959 | 0.857 | 0.795 | 0.0 | |
| 224093878 | 635 | ABC transporter family protein [Populus | 0.786 | 0.798 | 0.862 | 0.0 | |
| 297797507 | 694 | ATGCN5 [Arabidopsis lyrata subsp. lyrata | 0.959 | 0.891 | 0.800 | 0.0 | |
| 449448414 | 714 | PREDICTED: ABC transporter F family memb | 0.967 | 0.873 | 0.780 | 0.0 | |
| 225438549 | 718 | PREDICTED: ABC transporter F family memb | 0.970 | 0.871 | 0.779 | 0.0 | |
| 15912315 | 692 | AT5g64840/MXK3_6 [Arabidopsis thaliana] | 0.953 | 0.888 | 0.794 | 0.0 | |
| 15238261 | 692 | ABC transporter F family member 5 [Arabi | 0.953 | 0.888 | 0.794 | 0.0 | |
| 356509032 | 696 | PREDICTED: ABC transporter F family memb | 0.939 | 0.870 | 0.791 | 0.0 | |
| 297811095 | 678 | hypothetical protein ARALYDRAFT_487818 [ | 0.941 | 0.895 | 0.782 | 0.0 |
| >gi|255576683|ref|XP_002529230.1| abc transporter, putative [Ricinus communis] gi|223531303|gb|EEF33143.1| abc transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1020 bits (2637), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/638 (81%), Positives = 567/638 (88%), Gaps = 14/638 (2%)
Query: 1 MDVTTT--TTNLRSSFFSTLQPRFTPFASAKSFTN-----SLNFTKKQRP--RITCQVSA 51
MD++T +L SS F T P PF S S+ F RP RIT ++S
Sbjct: 1 MDLSTKFHRLDLHSSSFLTGSPLRPPFKQNSSLPIITKPISVKFPS-TRPTSRITARLST 59
Query: 52 ATVEKKSIAKAQSD---VESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYK 108
ATVE S+A A +D +ESLFSSS+ +K+ S KQSNTGAS I+SG+KLENISKSYK
Sbjct: 60 ATVET-SVADADTDTTDIESLFSSSSGNDFDKRASRKQSNTGASGITSGIKLENISKSYK 118
Query: 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQ 168
GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRII GQEE DSGNVIKAK NMK+AFLSQ
Sbjct: 119 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIITGQEEADSGNVIKAKPNMKVAFLSQ 178
Query: 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQ 228
EFEVS+SRTV+EEFMSAF+EEMEIAG+LE+VQKA+E++V+D++LMGRLLDEFDLLQR+AQ
Sbjct: 179 EFEVSLSRTVKEEFMSAFEEEMEIAGRLEKVQKAIENSVEDLELMGRLLDEFDLLQRRAQ 238
Query: 229 AVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTN 288
AV+LD +DAK+SKLMPELGF +D DRLVASFS GWQMRMSLGKILLQDPDLLLLDEPTN
Sbjct: 239 AVDLDEVDAKISKLMPELGFAPEDSDRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTN 298
Query: 289 HLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEK 348
HLDLDTIEWLEGYL KQ+VPMVIISHDRAFLDQLCTKIVETEMGV+RTY+GNYSQY++ K
Sbjct: 299 HLDLDTIEWLEGYLQKQEVPMVIISHDRAFLDQLCTKIVETEMGVARTYDGNYSQYLVSK 358
Query: 349 AAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRK 408
AAWIESQYAAWEKQQ+EIEQTKDLI+RLGAGANSGRASSAEKKLERLQEE+QIEKPFQRK
Sbjct: 359 AAWIESQYAAWEKQQKEIEQTKDLISRLGAGANSGRASSAEKKLERLQEEDQIEKPFQRK 418
Query: 409 QMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468
QMKIRFPERGRSGR+VV IKNLEF YED++LFN+ NLTIERGEK AIIGPNGCGKSTLLK
Sbjct: 419 QMKIRFPERGRSGRNVVMIKNLEFSYEDQVLFNKTNLTIERGEKIAIIGPNGCGKSTLLK 478
Query: 469 LIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLG 528
LIMGLEKP GE++LGEHNVLPNYFEQNQAEALDLDKTVL+TV E AEDWRIDDIKGLLG
Sbjct: 479 LIMGLEKPNAGEIVLGEHNVLPNYFEQNQAEALDLDKTVLQTVEEVAEDWRIDDIKGLLG 538
Query: 529 RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE 588
RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI SKEMLEEAI+E
Sbjct: 539 RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDITSKEMLEEAITE 598
Query: 589 YKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626
Y GT+ITVSHDRYF+KQIVNRV+EVK LQDYAGDYN
Sbjct: 599 YTGTIITVSHDRYFIKQIVNRVIEVKDGKLQDYAGDYN 636
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224081252|ref|XP_002306353.1| ABC transporter family protein [Populus trichocarpa] gi|222855802|gb|EEE93349.1| ABC transporter family protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1012 bits (2617), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/635 (79%), Positives = 564/635 (88%), Gaps = 16/635 (2%)
Query: 7 TTNLRSSFF------------STLQPRFTPFASAKSF--TNSLNF-TKKQRPRITCQVSA 51
+T S+FF S L+P + ++ + TNS NF T++ +I ++S
Sbjct: 4 STKFHSTFFTGATLFNPQQKTSLLKPNPSLLSTKFTINNTNSFNFPTRRPNSKIKARLST 63
Query: 52 ATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVT 111
ATVE S+A+ ++D ESLFSS++D +K KQSN GAS ISSG+KLENISKSYKGVT
Sbjct: 64 ATVET-SVAEPETDTESLFSSNSDVDFDKNRLRKQSNRGASGISSGIKLENISKSYKGVT 122
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171
VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRI+ G EEPDSGNVIKAK+NMKIAFLSQEFE
Sbjct: 123 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIMTGLEEPDSGNVIKAKANMKIAFLSQEFE 182
Query: 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231
VSMSRTV+EEFMSAFKEEMEIA +LE+VQKA+E +V+D++LMGRLLDEFDLLQR+AQAV+
Sbjct: 183 VSMSRTVKEEFMSAFKEEMEIAKRLEKVQKAIEGSVEDLELMGRLLDEFDLLQRRAQAVD 242
Query: 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
LD +DAK+SKLMP+LGF+ +D DRLVA+FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD
Sbjct: 243 LDEVDAKISKLMPQLGFSPEDSDRLVAAFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 302
Query: 292 LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAW 351
LDTIEWLEGYL KQDVPMVIISHDRAFLDQLCTKIVET+MGVSRT+EGNYSQY++ KA W
Sbjct: 303 LDTIEWLEGYLQKQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYIISKAEW 362
Query: 352 IESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMK 411
+E+Q AAWEK QREIE T+DLI+RLG+GANSGRASSAEKKLERLQEE+QIEKPFQRKQMK
Sbjct: 363 VEAQLAAWEKHQREIEHTRDLISRLGSGANSGRASSAEKKLERLQEEDQIEKPFQRKQMK 422
Query: 412 IRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471
IRFPERGRSGRSVV I+NLEFGYED++LFN+ NL IERGEK AI+GPNGCGKSTLLKLIM
Sbjct: 423 IRFPERGRSGRSVVAIRNLEFGYEDKVLFNKTNLMIERGEKIAILGPNGCGKSTLLKLIM 482
Query: 472 GLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCN 531
G+EKP GE++LGEHNVLPNYFEQNQAEALDLDKTVL+TV E AEDWR+DDIKGLLGRCN
Sbjct: 483 GVEKPSRGEIVLGEHNVLPNYFEQNQAEALDLDKTVLQTVEEVAEDWRLDDIKGLLGRCN 542
Query: 532 FKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG 591
FK DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG
Sbjct: 543 FKVDMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG 602
Query: 592 TVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626
TVITVSHDRYF+KQIVNRVVEVK LQDYAGDYN
Sbjct: 603 TVITVSHDRYFIKQIVNRVVEVKDGKLQDYAGDYN 637
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224093878|ref|XP_002310031.1| ABC transporter family protein [Populus trichocarpa] gi|222852934|gb|EEE90481.1| ABC transporter family protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1008 bits (2605), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/569 (86%), Positives = 536/569 (94%)
Query: 58 SIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVT 117
S A +++D+ESLFSS++D ++K SNKQSN GAS ISSG+KLENISKSYKGVTVLKDVT
Sbjct: 1 SGADSKTDIESLFSSNSDVEFDRKRSNKQSNGGASGISSGIKLENISKSYKGVTVLKDVT 60
Query: 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177
WEVKKGEKVGLVGVNGAGKTTQLRII GQEEPDSGNVIKAK+NMKIAFLSQEFEVSMSRT
Sbjct: 61 WEVKKGEKVGLVGVNGAGKTTQLRIITGQEEPDSGNVIKAKANMKIAFLSQEFEVSMSRT 120
Query: 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237
V+EEFMSAFKEEMEIA +LE+VQKA+E AV+D+DLMGRLLDEFDLLQR+AQAV+LD +DA
Sbjct: 121 VKEEFMSAFKEEMEIAERLEKVQKAIEGAVEDLDLMGRLLDEFDLLQRRAQAVDLDEVDA 180
Query: 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEW 297
K+SKLMPELGF+ +D DRLVASFS GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEW
Sbjct: 181 KISKLMPELGFSPEDSDRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEW 240
Query: 298 LEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYA 357
LEGYL KQDVPMVIISHDRAFLDQLCTKIVET+MGVSRT+EGNYSQY++ KA W+E+Q A
Sbjct: 241 LEGYLQKQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYIISKAEWVEAQLA 300
Query: 358 AWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPER 417
AWEKQQ+EIE T++LI+RLGAGANSGRASSAEKKLERLQEE+QIEKPFQ KQMKIRFPER
Sbjct: 301 AWEKQQKEIEHTRELISRLGAGANSGRASSAEKKLERLQEEDQIEKPFQHKQMKIRFPER 360
Query: 418 GRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477
GRSGRSVV I NLEFG+ED++LFN+ NL IERGEK AIIGPNGCGKSTLLKLIMGLEKP
Sbjct: 361 GRSGRSVVAINNLEFGFEDKVLFNKTNLMIERGEKIAIIGPNGCGKSTLLKLIMGLEKPT 420
Query: 478 GGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML 537
GG++++GEHNVLPNYFEQNQAEALDLDKTV++TV E AEDWR+DDIKGLLGRCNFKADML
Sbjct: 421 GGQIMVGEHNVLPNYFEQNQAEALDLDKTVIQTVEEVAEDWRLDDIKGLLGRCNFKADML 480
Query: 538 DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVS 597
DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY GTVITVS
Sbjct: 481 DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYSGTVITVS 540
Query: 598 HDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626
HDRYF+KQIVNRVVEVK LQDYAGDYN
Sbjct: 541 HDRYFIKQIVNRVVEVKDDKLQDYAGDYN 569
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297797507|ref|XP_002866638.1| ATGCN5 [Arabidopsis lyrata subsp. lyrata] gi|297312473|gb|EFH42897.1| ATGCN5 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 998 bits (2579), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/621 (80%), Positives = 551/621 (88%), Gaps = 2/621 (0%)
Query: 7 TTNLRSSFFSTLQPRFTPFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKSIAKAQSDV 66
+ +LRS+FF+ L+P +P S +S++ ++ I QVS ++E S+ + Q ++
Sbjct: 9 SLDLRSTFFTGLRPCPSPIPSNFIKISSISNPRRGISTIRAQVSTISLET-SVKERQDEI 67
Query: 67 ESLFSSSADEFENKKYSN-KQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEK 125
ESLFS E ++ + N K S GAS ISSGVKLENI KSYKGVTVLKDVTWEVK+GEK
Sbjct: 68 ESLFSKPTSEQDSDRRRNGKNSKNGASGISSGVKLENIRKSYKGVTVLKDVTWEVKRGEK 127
Query: 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSA 185
VGLVGVNGAGKTTQLRII GQEEPDSGNVIKAK NMKIAFLSQEFEVSMS+TVREEFMSA
Sbjct: 128 VGLVGVNGAGKTTQLRIITGQEEPDSGNVIKAKPNMKIAFLSQEFEVSMSKTVREEFMSA 187
Query: 186 FKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245
FKEEMEI KLE+VQKA+E +VDD+DLMGRLLDEFDLLQR+AQAVNLD++DAK+SKLMPE
Sbjct: 188 FKEEMEITEKLEKVQKAIEGSVDDLDLMGRLLDEFDLLQRRAQAVNLDSVDAKISKLMPE 247
Query: 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ 305
LGF ++D DRLVASFS GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL KQ
Sbjct: 248 LGFASEDADRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLQKQ 307
Query: 306 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQRE 365
DVPMVIISHDRAFLDQLCTKIVETEMGVSRT+EGNYSQYV+ KA WIE+Q AAWEKQQ+E
Sbjct: 308 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTFEGNYSQYVISKAEWIETQNAAWEKQQKE 367
Query: 366 IEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVV 425
I+ TKDLI RLGAGANSGRAS+AEKKLE+LQE+E IEKPFQRKQMKIRFPERG SGRSVV
Sbjct: 368 IDSTKDLIARLGAGANSGRASTAEKKLEKLQEQELIEKPFQRKQMKIRFPERGTSGRSVV 427
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
+KN++FG+ED++LF +ANL IERGEK AIIGPNGCGKSTLLKLIMGLEKP GEV+LGE
Sbjct: 428 NVKNIDFGFEDKMLFKKANLAIERGEKIAIIGPNGCGKSTLLKLIMGLEKPMKGEVILGE 487
Query: 486 HNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLS 545
HNVLPNYFEQNQAE LDLDKTVLETV EAAEDWR DDIKGLLGRCNFKADMLDRKVSLLS
Sbjct: 488 HNVLPNYFEQNQAEVLDLDKTVLETVCEAAEDWRSDDIKGLLGRCNFKADMLDRKVSLLS 547
Query: 546 GGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQ 605
GGEKARLAFCKFMV PSTLLVLDEPTNHLDIPSKEMLEEAI+EY+GTVI VSHDRYF+KQ
Sbjct: 548 GGEKARLAFCKFMVTPSTLLVLDEPTNHLDIPSKEMLEEAINEYQGTVIAVSHDRYFIKQ 607
Query: 606 IVNRVVEVKGSNLQDYAGDYN 626
IVNRV+EV+ L+DYAGDYN
Sbjct: 608 IVNRVIEVEDGCLEDYAGDYN 628
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448414|ref|XP_004141961.1| PREDICTED: ABC transporter F family member 5-like [Cucumis sativus] gi|449519128|ref|XP_004166587.1| PREDICTED: ABC transporter F family member 5-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 997 bits (2577), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/648 (78%), Positives = 562/648 (86%), Gaps = 24/648 (3%)
Query: 1 MDVTTTTTNL--RSSFFS---TLQPRFTPFASAKSFTN-------------SLNFTKKQR 42
MD+T +L RSSF + L R T F S++ + S+ +
Sbjct: 1 MDLTIKLHHLHLRSSFLTGSPLLDSRKTLFGSSQHHLSNRTVSQSIGGNFKSIRASSLPN 60
Query: 43 PR-ITCQVSAATVEKKSIAKAQS--DVESLFSS-SADEFENKKYSNKQSNTGASSISSGV 98
PR + ++ A VE S+A+ + D+ESL SS S EF+ K+ KQSN G S ISSGV
Sbjct: 61 PRRVNSRIEAVAVEA-SVAETSTKEDIESLLSSGSVGEFDGKRVF-KQSNAGDSRISSGV 118
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
KLEN+SKSYKG TVLK+V+WEVKKGEKVGLVGVNGAGKTTQ+RIIAG EEPDSGNV+KAK
Sbjct: 119 KLENVSKSYKGATVLKNVSWEVKKGEKVGLVGVNGAGKTTQMRIIAGLEEPDSGNVMKAK 178
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
+NMKIAFLSQEFEVS+SRTVREEF+SAFKEEMEIA +LE+VQKALESAV+D+ LMGRLLD
Sbjct: 179 ANMKIAFLSQEFEVSLSRTVREEFLSAFKEEMEIATRLEKVQKALESAVEDLQLMGRLLD 238
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
EFDLLQR+AQAV+LD +D KVSKL+PELGF+ +D DRLVASFS GWQMRMSLGKILLQ+P
Sbjct: 239 EFDLLQRRAQAVDLDEVDVKVSKLLPELGFSEEDSDRLVASFSGGWQMRMSLGKILLQEP 298
Query: 279 DLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYE 338
DLLLLDEPTNHLDLDTIEWLEGYL KQDVPMVIISHDRAFLDQLCTKIVET+MGVSRTYE
Sbjct: 299 DLLLLDEPTNHLDLDTIEWLEGYLNKQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTYE 358
Query: 339 GNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEE 398
GNYSQYV+ KA WIE+Q AAWEKQQ+EIEQTKDLI+RLGAGANSGRASSAEKKLERLQE
Sbjct: 359 GNYSQYVMSKAEWIEAQNAAWEKQQKEIEQTKDLISRLGAGANSGRASSAEKKLERLQEA 418
Query: 399 EQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGP 458
+ +EKPFQRKQMKIRFPERG+SGR+VV +KNLEFG+ED+ LFN+ANL IERGEK AI+GP
Sbjct: 419 DLVEKPFQRKQMKIRFPERGQSGRTVVAVKNLEFGFEDKQLFNKANLIIERGEKIAILGP 478
Query: 459 NGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDW 518
NGCGKSTLLKLIMGLEKP+GGEVLLGEHNVLPNYFEQNQAEALDL+KTVLETV E AEDW
Sbjct: 479 NGCGKSTLLKLIMGLEKPKGGEVLLGEHNVLPNYFEQNQAEALDLEKTVLETVEEVAEDW 538
Query: 519 RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 578
RIDDIKGLLGRCNFK +MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS
Sbjct: 539 RIDDIKGLLGRCNFKTEMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 598
Query: 579 KEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626
KEMLEEAI+EY GTVITVSHDRYF+KQIVNRV+EVK NLQDYAGDYN
Sbjct: 599 KEMLEEAITEYSGTVITVSHDRYFIKQIVNRVIEVKEGNLQDYAGDYN 646
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225438549|ref|XP_002279804.1| PREDICTED: ABC transporter F family member 5 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 989 bits (2558), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/652 (77%), Positives = 563/652 (86%), Gaps = 26/652 (3%)
Query: 1 MDVTTT--TTNLRSSFFST----------LQPRFTPF-------ASAKSFTNSLNFTK-- 39
MD+ T +LRSSFF+ L+P F P AS S T S + K
Sbjct: 1 MDLATKLQCIDLRSSFFTGSALLDARKTGLRPHFRPHTRSIPISASTHSITGSNSSIKTS 60
Query: 40 ---KQRPRITCQVSAATVEKKSIAKAQS--DVESLFSSSADEFENKKYSNKQSNTGASSI 94
R R + S A S+A+ S D+ESLFS+++ + +K NKQSN+GASSI
Sbjct: 61 ALFNSRTRSSMVSSKAVAMDTSVAETMSREDIESLFSNNSVDEAYQKRVNKQSNSGASSI 120
Query: 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
SSGV+LEN+SK YKGVTVLKDV+WEVKKGEKVGLVGVNGAGKTTQLRII G EEPDSGNV
Sbjct: 121 SSGVRLENVSKGYKGVTVLKDVSWEVKKGEKVGLVGVNGAGKTTQLRIITGLEEPDSGNV 180
Query: 155 IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMG 214
IKAK NMKIAFLSQEFEVS+SRTV+EEFMSAFKEEMEIA +LE+VQKA+ES+VDD++LMG
Sbjct: 181 IKAKMNMKIAFLSQEFEVSLSRTVKEEFMSAFKEEMEIAARLEKVQKAIESSVDDLELMG 240
Query: 215 RLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL 274
RLLDE DLLQR+AQAV+LD +DAK+SKLMPELGF +D DRLVASFSSGWQMRMSLGKIL
Sbjct: 241 RLLDENDLLQRRAQAVDLDEVDAKISKLMPELGFAPEDSDRLVASFSSGWQMRMSLGKIL 300
Query: 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVS 334
LQ+PDLLLLDEPTNHLDLDTIEWLEGYL KQDVPMVIISHDRAFLDQLCTKIVET+MGVS
Sbjct: 301 LQEPDLLLLDEPTNHLDLDTIEWLEGYLNKQDVPMVIISHDRAFLDQLCTKIVETDMGVS 360
Query: 335 RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLER 394
RTYEGNYSQYV+ KA WIE+QYAAWEKQQ+EIE T+DLI+RL GANSGRAS+AEKKLE+
Sbjct: 361 RTYEGNYSQYVIAKATWIEAQYAAWEKQQKEIEHTRDLISRLSGGANSGRASTAEKKLEK 420
Query: 395 LQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTA 454
LQ+EEQI+KPFQ KQMKIRFPERG SGRSV+ IKNLEFGY D++LF +ANLTIERGEK A
Sbjct: 421 LQDEEQIDKPFQHKQMKIRFPERGVSGRSVLAIKNLEFGYGDKVLFKKANLTIERGEKIA 480
Query: 455 IIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA 514
IIGPNGCGKSTLLKLIMGLEKP GGEVLLGEHNVLPNYFEQNQAEALDLDKTVL+TV +
Sbjct: 481 IIGPNGCGKSTLLKLIMGLEKPIGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLQTVEDV 540
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
AE+W+IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL
Sbjct: 541 AENWKIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 600
Query: 575 DIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626
DIP+KEMLEEAI+EYKGTV+TVSHDRYF+KQIVNRV+EVK NLQDYAGDYN
Sbjct: 601 DIPTKEMLEEAITEYKGTVVTVSHDRYFIKQIVNRVIEVKDGNLQDYAGDYN 652
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15912315|gb|AAL08291.1| AT5g64840/MXK3_6 [Arabidopsis thaliana] gi|23308219|gb|AAN18079.1| At5g64840/MXK3_6 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 989 bits (2557), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/619 (79%), Positives = 550/619 (88%), Gaps = 4/619 (0%)
Query: 9 NLRSSFFSTLQPRFTPFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKSIAKAQSDVES 68
+LRS+FF+ L R +P S +S++ ++ I QVS ++E S+ + Q ++ES
Sbjct: 11 DLRSTFFTGL--RTSPIPSNFIKISSISNPRRDISTIRAQVSTISLET-SVKQRQDEIES 67
Query: 69 LFSSSADEFE-NKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVG 127
LFS + + ++K + K S GAS ISSGVKLENI KSYKGVTVLKDVTWEVK+GEKVG
Sbjct: 68 LFSKQPSQQDSDRKQNGKSSKNGASGISSGVKLENIRKSYKGVTVLKDVTWEVKRGEKVG 127
Query: 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK 187
LVGVNGAGKTTQLRII GQEEPDSGNVIKAK NMK+AFLSQEFEVSMS+TVREEFM+AFK
Sbjct: 128 LVGVNGAGKTTQLRIITGQEEPDSGNVIKAKPNMKVAFLSQEFEVSMSKTVREEFMTAFK 187
Query: 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247
EEMEI KLE+VQKA+E +VDD+DLMGRLLDEFDLLQR+AQAVNLD++DAK+SKLMPELG
Sbjct: 188 EEMEITEKLEKVQKAIEGSVDDLDLMGRLLDEFDLLQRRAQAVNLDSVDAKISKLMPELG 247
Query: 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDV 307
F +D DRLVASFS GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL KQDV
Sbjct: 248 FAPEDADRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLQKQDV 307
Query: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIE 367
PMVIISHDRAFLDQLCTKIVETEMGVSRT+EGNYSQYV+ KA WIE+Q AAWEKQQ++I+
Sbjct: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTFEGNYSQYVISKAEWIETQNAAWEKQQKDID 367
Query: 368 QTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTI 427
TKDLI RLGAGANSGRAS+AEKKLE+LQE+E IEKPFQRKQMKIRFPERG SGRSVV +
Sbjct: 368 STKDLIARLGAGANSGRASTAEKKLEKLQEQELIEKPFQRKQMKIRFPERGTSGRSVVNV 427
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487
KN++FG+ED++LF +ANL+IERGEK AI+GPNGCGKSTLLKLIMGLEKP GEV+LGEHN
Sbjct: 428 KNIDFGFEDKMLFKKANLSIERGEKIAILGPNGCGKSTLLKLIMGLEKPVKGEVILGEHN 487
Query: 488 VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
VLPNYFEQNQAE LDLDKTVLETV EAAEDWR DDIKGLLGRCNFKADMLDRKVSLLSGG
Sbjct: 488 VLPNYFEQNQAEVLDLDKTVLETVCEAAEDWRSDDIKGLLGRCNFKADMLDRKVSLLSGG 547
Query: 548 EKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIV 607
EKARLAFCKFMV PSTLLVLDEPTNHLDIPSKEMLEEAI+EY+GTVI VSHDRYF+KQIV
Sbjct: 548 EKARLAFCKFMVTPSTLLVLDEPTNHLDIPSKEMLEEAINEYQGTVIAVSHDRYFIKQIV 607
Query: 608 NRVVEVKGSNLQDYAGDYN 626
NRV+EV+ L+DYAGDYN
Sbjct: 608 NRVIEVEDGCLEDYAGDYN 626
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15238261|ref|NP_201289.1| ABC transporter F family member 5 [Arabidopsis thaliana] gi|75335535|sp|Q9LV93.1|AB5F_ARATH RecName: Full=ABC transporter F family member 5; Short=ABC transporter ABCF.5; Short=AtABCF5; AltName: Full=GCN20-type ATP-binding cassette protein GCN5 gi|8843748|dbj|BAA97296.1| ABC transporter protein 1-like [Arabidopsis thaliana] gi|110742654|dbj|BAE99239.1| ABC transporter protein 1-like [Arabidopsis thaliana] gi|332010577|gb|AED97960.1| ABC transporter F family member 5 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 989 bits (2557), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/619 (79%), Positives = 550/619 (88%), Gaps = 4/619 (0%)
Query: 9 NLRSSFFSTLQPRFTPFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKSIAKAQSDVES 68
+LRS+FF+ L R +P S +S++ ++ I QVS ++E S+ + Q ++ES
Sbjct: 11 DLRSTFFTGL--RTSPIPSNFIKISSISNPRRDISTIRAQVSTISLET-SVKQRQDEIES 67
Query: 69 LFSSSADEFE-NKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVG 127
LFS + + ++K + K S GAS ISSGVKLENI KSYKGVTVLKDVTWEVK+GEKVG
Sbjct: 68 LFSKQPSQQDSDRKRNGKSSKNGASGISSGVKLENIRKSYKGVTVLKDVTWEVKRGEKVG 127
Query: 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK 187
LVGVNGAGKTTQLRII GQEEPDSGNVIKAK NMK+AFLSQEFEVSMS+TVREEFM+AFK
Sbjct: 128 LVGVNGAGKTTQLRIITGQEEPDSGNVIKAKPNMKVAFLSQEFEVSMSKTVREEFMTAFK 187
Query: 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247
EEMEI KLE+VQKA+E +VDD+DLMGRLLDEFDLLQR+AQAVNLD++DAK+SKLMPELG
Sbjct: 188 EEMEITEKLEKVQKAIEGSVDDLDLMGRLLDEFDLLQRRAQAVNLDSVDAKISKLMPELG 247
Query: 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDV 307
F +D DRLVASFS GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL KQDV
Sbjct: 248 FAPEDADRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLQKQDV 307
Query: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIE 367
PMVIISHDRAFLDQLCTKIVETEMGVSRT+EGNYSQYV+ KA WIE+Q AAWEKQQ++I+
Sbjct: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTFEGNYSQYVISKAEWIETQNAAWEKQQKDID 367
Query: 368 QTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTI 427
TKDLI RLGAGANSGRAS+AEKKLE+LQE+E IEKPFQRKQMKIRFPERG SGRSVV +
Sbjct: 368 STKDLIARLGAGANSGRASTAEKKLEKLQEQELIEKPFQRKQMKIRFPERGTSGRSVVNV 427
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487
KN++FG+ED++LF +ANL+IERGEK AI+GPNGCGKSTLLKLIMGLEKP GEV+LGEHN
Sbjct: 428 KNIDFGFEDKMLFKKANLSIERGEKIAILGPNGCGKSTLLKLIMGLEKPVKGEVILGEHN 487
Query: 488 VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
VLPNYFEQNQAE LDLDKTVLETV EAAEDWR DDIKGLLGRCNFKADMLDRKVSLLSGG
Sbjct: 488 VLPNYFEQNQAEVLDLDKTVLETVCEAAEDWRSDDIKGLLGRCNFKADMLDRKVSLLSGG 547
Query: 548 EKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIV 607
EKARLAFCKFMV PSTLLVLDEPTNHLDIPSKEMLEEAI+EY+GTVI VSHDRYF+KQIV
Sbjct: 548 EKARLAFCKFMVTPSTLLVLDEPTNHLDIPSKEMLEEAINEYQGTVIAVSHDRYFIKQIV 607
Query: 608 NRVVEVKGSNLQDYAGDYN 626
NRV+EV+ L+DYAGDYN
Sbjct: 608 NRVIEVEDGCLEDYAGDYN 626
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356509032|ref|XP_003523256.1| PREDICTED: ABC transporter F family member 5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 986 bits (2548), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/619 (79%), Positives = 545/619 (88%), Gaps = 13/619 (2%)
Query: 11 RSSFFSTLQPRFTPFASAKS---FTNSLNFTKKQRPRITCQVSAATVEKKSIAKAQSDVE 67
+ S L PR + + +TN F+ RP ++A+ S+ + D+E
Sbjct: 22 KPSALRHLPPRVLSRTNTNTNLIYTN--RFSGPPRP------NSASSTGLSMITVEDDIE 73
Query: 68 SLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVG 127
SLFS + E E + KQ + GAS ISSGVKLEN+ K+YKGVTVLKDV+WEVKKGEKVG
Sbjct: 74 SLFSETNSEEERR--VRKQPSIGASGISSGVKLENVGKAYKGVTVLKDVSWEVKKGEKVG 131
Query: 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK 187
LVGVNGAGKTTQ+RIIAG EEPD GNV+KAK+NMKIAFL+QEFEV+ SRTVREEFM+AFK
Sbjct: 132 LVGVNGAGKTTQMRIIAGLEEPDFGNVVKAKANMKIAFLNQEFEVAPSRTVREEFMNAFK 191
Query: 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247
EEME+AGKLE+VQKALE AV+D++LMGRLLDEFDLLQR+AQ VNLD +DAK+SKLMPELG
Sbjct: 192 EEMEVAGKLEKVQKALEGAVNDLELMGRLLDEFDLLQRRAQNVNLDEVDAKISKLMPELG 251
Query: 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDV 307
F +D DRLVASFS GWQMRM LGKILLQ+PDLLLLDEPTNHLDLDTIEWLE YL +QDV
Sbjct: 252 FAPEDSDRLVASFSGGWQMRMCLGKILLQEPDLLLLDEPTNHLDLDTIEWLEDYLNQQDV 311
Query: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIE 367
PMVIISHDRAFLDQLCTKIVET+MGVSRT+EGNYSQYV+ KAAWIE+QYAAWEKQQ+EIE
Sbjct: 312 PMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYVISKAAWIEAQYAAWEKQQKEIE 371
Query: 368 QTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTI 427
QT+DLI+RLGAGANSGRASSAEKKLERLQEEE +EKPF+RKQMKIRFPERGRSGRSVV I
Sbjct: 372 QTRDLISRLGAGANSGRASSAEKKLERLQEEELVEKPFERKQMKIRFPERGRSGRSVVAI 431
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487
NLEFG+ED+ LF +ANLTIERGEK AIIGPNGCGKSTLLKLIMGLEKP GGEVLLGEHN
Sbjct: 432 NNLEFGFEDKTLFKKANLTIERGEKIAIIGPNGCGKSTLLKLIMGLEKPTGGEVLLGEHN 491
Query: 488 VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
VLPNYFEQNQAEALDL+KTVLETV EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG
Sbjct: 492 VLPNYFEQNQAEALDLEKTVLETVEEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 551
Query: 548 EKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIV 607
EKARLAFCKFMVKPST+LVLDEPTNHLDIPSKEMLEEAI+EY+GTVITVSHDRYF+KQIV
Sbjct: 552 EKARLAFCKFMVKPSTMLVLDEPTNHLDIPSKEMLEEAINEYQGTVITVSHDRYFIKQIV 611
Query: 608 NRVVEVKGSNLQDYAGDYN 626
NRV+E+K +QDYAGDY+
Sbjct: 612 NRVIEIKDGTIQDYAGDYD 630
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811095|ref|XP_002873431.1| hypothetical protein ARALYDRAFT_487818 [Arabidopsis lyrata subsp. lyrata] gi|297319268|gb|EFH49690.1| hypothetical protein ARALYDRAFT_487818 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 985 bits (2547), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/631 (78%), Positives = 552/631 (87%), Gaps = 24/631 (3%)
Query: 1 MDVTTT--TTNLRSSFFSTLQPRFTPFASAKSFT---NSLNFTKKQRPRITCQVSAATVE 55
M +TT + NLRS+FF T P FT +S++ +++ P I Q SA +
Sbjct: 1 MGLTTNLHSLNLRSAFFFT-----NPLPCHTLFTFKLSSVSNPRREFPNIIAQASATS-- 53
Query: 56 KKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKD 115
+ S+++SLFS+ ++K KQSN GASSISSGV+LENISKSY+GVTVLKD
Sbjct: 54 ------SNSELDSLFST------DRKLIGKQSNNGASSISSGVRLENISKSYEGVTVLKD 101
Query: 116 VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175
VTWEVKKGEKVGL+GVNGAGKTTQLRII GQEEPDSGNVI AK N+K+AFLSQEFEVSM
Sbjct: 102 VTWEVKKGEKVGLIGVNGAGKTTQLRIITGQEEPDSGNVIWAKPNLKVAFLSQEFEVSMG 161
Query: 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235
+TV+EEFMSAFKEEME+A KLER+QKA+E AVDD++LMG+LLDEFDLLQR+AQ V+LD++
Sbjct: 162 KTVKEEFMSAFKEEMEVARKLERLQKAIEEAVDDLELMGKLLDEFDLLQRRAQEVDLDSI 221
Query: 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTI 295
DAK+SKLM ELGF ++D DRLVASFSSGWQMRMSLGKILLQ+PDLLLLDEPTNHLDLDTI
Sbjct: 222 DAKISKLMSELGFVSEDADRLVASFSSGWQMRMSLGKILLQNPDLLLLDEPTNHLDLDTI 281
Query: 296 EWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQ 355
EWLEGYL KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT+EGNYSQYV+ KA W+E+Q
Sbjct: 282 EWLEGYLNKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTFEGNYSQYVISKAEWVEAQ 341
Query: 356 YAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFP 415
YA+WEKQQ+EIE TKDLI+RL GANSGRASSAEKKLE+LQEEEQIEKPFQRKQMKIRF
Sbjct: 342 YASWEKQQKEIEATKDLISRLSGGANSGRASSAEKKLEKLQEEEQIEKPFQRKQMKIRFL 401
Query: 416 ERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475
E G SGRSVVT+KNL FG+ED++LFN+ANL IERGEK AIIGPNGCGKSTLLKLIMGLEK
Sbjct: 402 ECGLSGRSVVTVKNLGFGFEDKILFNKANLAIERGEKVAIIGPNGCGKSTLLKLIMGLEK 461
Query: 476 PRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD 535
P GEV+LGEHNVLPNYFEQNQAEALDLDKTV+ETV EAA DWRIDDIK LLGRCNFKAD
Sbjct: 462 PMRGEVILGEHNVLPNYFEQNQAEALDLDKTVIETVVEAAVDWRIDDIKALLGRCNFKAD 521
Query: 536 MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVIT 595
MLDR+VSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI+EYKGTVIT
Sbjct: 522 MLDRRVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAINEYKGTVIT 581
Query: 596 VSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626
VSHDRYF+KQIVNRV+EV+ L DYAGDYN
Sbjct: 582 VSHDRYFIKQIVNRVIEVRDGGLMDYAGDYN 612
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 645 | ||||||
| TAIR|locus:2177689 | 692 | ABCF5 "ATP-binding cassette F5 | 0.953 | 0.888 | 0.718 | 2.2e-231 | |
| TAIR|locus:2178168 | 678 | ABCF2 "ATP-binding cassette F2 | 0.945 | 0.899 | 0.702 | 4.6e-224 | |
| TIGR_CMR|GSU_0922 | 645 | GSU_0922 "ABC transporter, ATP | 0.804 | 0.804 | 0.348 | 6.2e-85 | |
| UNIPROTKB|Q81VE6 | 640 | BA_0262 "ABC transporter, ATP- | 0.812 | 0.818 | 0.332 | 5e-76 | |
| TIGR_CMR|BA_0262 | 640 | BA_0262 "ABC transporter, ATP- | 0.812 | 0.818 | 0.332 | 5e-76 | |
| TIGR_CMR|DET_0224 | 663 | DET_0224 "ABC transporter, ATP | 0.812 | 0.790 | 0.315 | 6.3e-76 | |
| TIGR_CMR|GSU_2093 | 545 | GSU_2093 "ABC transporter, ATP | 0.810 | 0.959 | 0.333 | 7.3e-75 | |
| TIGR_CMR|BA_0228 | 626 | BA_0228 "ABC transporter, ATP- | 0.829 | 0.854 | 0.315 | 3.3e-70 | |
| UNIPROTKB|P0A9U3 | 530 | ybiT "putative ATP-binding com | 0.747 | 0.909 | 0.304 | 1.3e-61 | |
| UNIPROTKB|Q9KRW4 | 530 | VC1520 "ABC transporter, ATP-b | 0.801 | 0.975 | 0.287 | 4.3e-61 |
| TAIR|locus:2177689 ABCF5 "ATP-binding cassette F5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2232 (790.8 bits), Expect = 2.2e-231, P = 2.2e-231
Identities = 445/619 (71%), Positives = 499/619 (80%)
Query: 9 NLRSSFFSTLQPRFTPFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKSIAKAQSDVES 68
+LRS+FF+ L R +P S +S++ ++ I QVS ++E S+ + Q ++ES
Sbjct: 11 DLRSTFFTGL--RTSPIPSNFIKISSISNPRRDISTIRAQVSTISLET-SVKQRQDEIES 67
Query: 69 LFSSSADEFEN-KKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEXXXXXXXX 127
LFS + ++ +K + K S GAS ISSGVKLENI KSYKGVTVLKDVTWE
Sbjct: 68 LFSKQPSQQDSDRKRNGKSSKNGASGISSGVKLENIRKSYKGVTVLKDVTWEVKRGEKVG 127
Query: 128 XXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK 187
AGKTTQLRII GQEEPDSGNVIKAK NMK+AFLSQEFEVSMS+TVREEFM+AFK
Sbjct: 128 LVGVNGAGKTTQLRIITGQEEPDSGNVIKAKPNMKVAFLSQEFEVSMSKTVREEFMTAFK 187
Query: 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247
EEMEI KLE+VQKA+E +VDD+DLMGRLLDEFDLLQR+AQAVNLD++DAK+SKLMPELG
Sbjct: 188 EEMEITEKLEKVQKAIEGSVDDLDLMGRLLDEFDLLQRRAQAVNLDSVDAKISKLMPELG 247
Query: 248 FTADDGDRLVASFSSGWQMRMSLGKIXXXXXXXXXXXEPTNHLDLDTIEWLEGYLGKQDV 307
F +D DRLVASFS GWQMRMSLGKI EPTNHLDLDTIEWLEGYL KQDV
Sbjct: 248 FAPEDADRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLQKQDV 307
Query: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIE 367
PMVIISHDRAFLDQLCTKIVETEMGVSRT+EGNYSQYV+ KA WIE+Q AAWEKQQ++I+
Sbjct: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTFEGNYSQYVISKAEWIETQNAAWEKQQKDID 367
Query: 368 QTKDLINRLXXXXXXXXXXXXXXXXXXXXXXXXXXXPFQRKQMKIRFPERGRSGRSVVTI 427
TKDLI RL PFQRKQMKIRFPERG SGRSVV +
Sbjct: 368 STKDLIARLGAGANSGRASTAEKKLEKLQEQELIEKPFQRKQMKIRFPERGTSGRSVVNV 427
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487
KN++FG+ED++LF +ANL+IERGEK AI+GPNGCGKSTLLKLIMGLEKP GEV+LGEHN
Sbjct: 428 KNIDFGFEDKMLFKKANLSIERGEKIAILGPNGCGKSTLLKLIMGLEKPVKGEVILGEHN 487
Query: 488 VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
VLPNYFEQNQAE LDLDKTVLETV EAAEDWR DDIKGLLGRCNFKADMLDRKVSLLSGG
Sbjct: 488 VLPNYFEQNQAEVLDLDKTVLETVCEAAEDWRSDDIKGLLGRCNFKADMLDRKVSLLSGG 547
Query: 548 EKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIV 607
EKARLAFCKFMV PSTLLVLDEPTNHLDIPSKEMLEEAI+EY+GTVI VSHDRYF+KQIV
Sbjct: 548 EKARLAFCKFMVTPSTLLVLDEPTNHLDIPSKEMLEEAINEYQGTVIAVSHDRYFIKQIV 607
Query: 608 NRVVEVKGSNLQDYAGDYN 626
NRV+EV+ L+DYAGDYN
Sbjct: 608 NRVIEVEDGCLEDYAGDYN 626
|
|
| TAIR|locus:2178168 ABCF2 "ATP-binding cassette F2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2163 (766.5 bits), Expect = 4.6e-224, P = 4.6e-224
Identities = 441/628 (70%), Positives = 496/628 (78%)
Query: 1 MDVTTT--TTNLRSSFFSTLQPRFTPFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKS 58
M +TT + NLRS+FF T + K +S++ ++ P I VSAA+
Sbjct: 1 MVLTTNLYSLNLRSTFFFTNTITCPTLFTFK--LSSVSNPRRVFPNIRAHVSAAS----- 53
Query: 59 IAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTW 118
+ S++ESL S+ ++K +KQSN GASSISSGV+LENISKSY+G+TVLKDVTW
Sbjct: 54 ---SNSELESLLST------DRKLISKQSNNGASSISSGVRLENISKSYEGITVLKDVTW 104
Query: 119 EXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTV 178
E AGKTTQLRII GQEEPDSGNVI AK N+K+AFLSQEFEVSM +TV
Sbjct: 105 EVKKGEKVGLIGVNGAGKTTQLRIITGQEEPDSGNVIWAKPNLKVAFLSQEFEVSMGKTV 164
Query: 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238
+EEFM FKEEMEIA KLE +QKA+E AVDD++LMG+LLDEFDLLQR+AQ V+LD++ AK
Sbjct: 165 KEEFMCTFKEEMEIARKLENLQKAIEEAVDDLELMGKLLDEFDLLQRRAQEVDLDSIHAK 224
Query: 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXXXXXXXEPTNHLDLDTIEWL 298
+SKLM ELGF ++D DRLVASFSSGWQMRMSLGKI EPTNHLDLDTIEWL
Sbjct: 225 ISKLMSELGFVSEDADRLVASFSSGWQMRMSLGKILLQNPDLLLLDEPTNHLDLDTIEWL 284
Query: 299 EGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAA 358
EGYL KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT++GNYSQYV+ KA +E+QYAA
Sbjct: 285 EGYLIKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTFDGNYSQYVISKAELVEAQYAA 344
Query: 359 WEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXXXXXXXXXXPFQRKQMKIRFPERG 418
WEKQQ+EIE TKDLI+RL PFQRKQMKIRFPE G
Sbjct: 345 WEKQQKEIEATKDLISRLSAGANSGRASSAEKKLEKLQEEELIEKPFQRKQMKIRFPECG 404
Query: 419 RSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
SGRSVVT+KNL FG++D++LFN+ANL IERGEK AIIGPNGCGKSTLLKLIMGLEKP
Sbjct: 405 LSGRSVVTVKNLVFGFDDKMLFNKANLAIERGEKVAIIGPNGCGKSTLLKLIMGLEKPMR 464
Query: 479 GEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLD 538
GEV+LGEHNVLPNYFEQNQAEA DLDKTV+ETV EAA DWRIDDIK LLGRCNFKADMLD
Sbjct: 465 GEVILGEHNVLPNYFEQNQAEAQDLDKTVIETVVEAAVDWRIDDIKALLGRCNFKADMLD 524
Query: 539 RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSH 598
RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI+EYKGTVITVSH
Sbjct: 525 RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAINEYKGTVITVSH 584
Query: 599 DRYFVKQIVNRVVEVKGSNLQDYAGDYN 626
DRYF+KQIVNRV+EV+ L DYAGDYN
Sbjct: 585 DRYFIKQIVNRVIEVRDGGLMDYAGDYN 612
|
|
| TIGR_CMR|GSU_0922 GSU_0922 "ABC transporter, ATP-binding protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 850 (304.3 bits), Expect = 6.2e-85, P = 6.2e-85
Identities = 184/528 (34%), Positives = 294/528 (55%)
Query: 100 LENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKS 159
L +SK + G ++ ++ W AGK+T +RI+AG E SG +I A+
Sbjct: 4 LRKLSKDFAGTSLFAEIDWHLKKGERVGLVGENGAGKSTLMRIVAGLVEQTSGELIFARG 63
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
+ +L Q+ V+ R + E M+A ++ + +L + LE+ D G L+
Sbjct: 64 -ATVGYLPQDGIVTRGRGLLAEAMTALEDLQSLERELHELTSRLENISHDAPEHGECLER 122
Query: 220 FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXX 279
+ LQ + + +++A+ +++ LGFT D R FS GWQMR++L K+
Sbjct: 123 YGRLQEEFRLRGGYSMEAEACRVLDGLGFTTGDRQRDCGEFSGGWQMRIALAKLLLKKPN 182
Query: 280 XXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEG 339
EPTNHLD++ WLEGYL + ++++SHDR F+DQ+C +I E G Y
Sbjct: 183 VLLLDEPTNHLDIEARNWLEGYLQEYPHSVILVSHDRFFMDQVCHRITEVWNGTLTDYHC 242
Query: 340 NYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXXXXXX 399
+YS+Y+ + + + A +Q E+ + +D INR
Sbjct: 243 SYSRYLTAREERVAALLEAKRRQDEEVAKIEDFINRFRYKADKAALVQSRVKQLEKIERI 302
Query: 400 XXXXPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPN 459
P +RK+++ RFP+ +SGR V+ +K + Y ++ + +LT+E+GE+ A++G N
Sbjct: 303 VL--PPERKKIRFRFPDPPKSGRIVLELKGVTKAYGSHVVLDGIDLTVEKGERIALVGHN 360
Query: 460 GCGKSTLLKLIMGLEKP-RGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETV-AEAAED 517
G GKSTL+ ++ G KP +GGE + G HNV+ +YF Q+QA+ LD KT E + A+A D
Sbjct: 361 GAGKSTLMGVLAG--KPFQGGERIAG-HNVVADYFAQDQAQVLDGAKTAHEELLADAPFD 417
Query: 518 WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
+ ++ +LG F D + ++V +LSGGE+ RLA K +++PS LL++DEPTNHLD+
Sbjct: 418 M-VPQLRDILGAFLFTGDDIHKRVEVLSGGERNRLALAKMLLRPSNLLLMDEPTNHLDLF 476
Query: 578 SKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDY 625
SKE+L +A+ + GTV+ VSHDR+F+ + RVVEV+G L Y GDY
Sbjct: 477 SKEVLLDALKTFAGTVVFVSHDRHFIDGLATRVVEVEGGRLTSYHGDY 524
|
|
| UNIPROTKB|Q81VE6 BA_0262 "ABC transporter, ATP-binding protein" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
Identities = 177/532 (33%), Positives = 278/532 (52%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKA 157
+++ +SK Y T+L ++ E AGK+T L+IIAG+ D G +IK
Sbjct: 4 LQVNALSKLYGAETILANIKLEVQTKDRIALVGRNGAGKSTLLKIIAGELSHDGGEIIKP 63
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL--ESAVDDMDLMGR 215
K ++ + +L+Q + S T+ +E ++ F ++ KL R+++ + E + R
Sbjct: 64 K-DVSMGYLAQNTGLETSLTIWDEMLTVFTHLQQMETKLRRLEQEMGKEENFSNEATYER 122
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXX 275
LL ++D LQ + +A + ++ LGF + +++ S G + R++LGK+
Sbjct: 123 LLADYDQLQLDYKDQGGYQYEADIRSILSGLGFPVETHQTTISTLSGGQKTRLALGKLLL 182
Query: 276 XXXXXXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335
EPTNHLD++T+ WLE YL ++I+SHDR FLD+L T++ E SR
Sbjct: 183 TKPDLLILDEPTNHLDIETLTWLEQYLQGYPGAILIVSHDRYFLDKLVTQVYEISNKESR 242
Query: 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXX 395
+ GNYS+Y+ K+A E + +EKQQ EI + +D + +
Sbjct: 243 RFVGNYSKYLDLKSALYEQEMKRYEKQQDEIAKLEDFVQK--NIARASTTKRAQSRRKQL 300
Query: 396 XXXXXXXXPF-QRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTA 454
P K F +SG V+ +K+ GY+ + + + RG+ A
Sbjct: 301 DRMELLTRPLGDSKSASFHFDIEKQSGNDVLQVKDATIGYDKDPIIEHVTMRLTRGDSVA 360
Query: 455 IIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA 514
++GPNG GKSTLLK I+ G+V G NV Y++Q QA L K VL + +
Sbjct: 361 LVGPNGIGKSTLLKSIVNKLPLLHGDVSFGS-NVSVGYYDQEQAN-LTSSKRVLNELWDE 418
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
+I+ +LG F D + + VS LSGG+KARLA K M++ S LL+LDEPTNHL
Sbjct: 419 YPLQPEKEIRTILGNFLFTGDDVLKPVSSLSGGQKARLALAKLMMQKSNLLILDEPTNHL 478
Query: 575 DIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626
D+ SKE+LE A+ +Y GT++ VSHDRYF+ ++ V+E+ Q+Y GDY+
Sbjct: 479 DLNSKEILENALIDYPGTLLFVSHDRYFINRVTTTVIELSTEGAQEYLGDYD 530
|
|
| TIGR_CMR|BA_0262 BA_0262 "ABC transporter, ATP-binding protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
Identities = 177/532 (33%), Positives = 278/532 (52%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKA 157
+++ +SK Y T+L ++ E AGK+T L+IIAG+ D G +IK
Sbjct: 4 LQVNALSKLYGAETILANIKLEVQTKDRIALVGRNGAGKSTLLKIIAGELSHDGGEIIKP 63
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL--ESAVDDMDLMGR 215
K ++ + +L+Q + S T+ +E ++ F ++ KL R+++ + E + R
Sbjct: 64 K-DVSMGYLAQNTGLETSLTIWDEMLTVFTHLQQMETKLRRLEQEMGKEENFSNEATYER 122
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXX 275
LL ++D LQ + +A + ++ LGF + +++ S G + R++LGK+
Sbjct: 123 LLADYDQLQLDYKDQGGYQYEADIRSILSGLGFPVETHQTTISTLSGGQKTRLALGKLLL 182
Query: 276 XXXXXXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335
EPTNHLD++T+ WLE YL ++I+SHDR FLD+L T++ E SR
Sbjct: 183 TKPDLLILDEPTNHLDIETLTWLEQYLQGYPGAILIVSHDRYFLDKLVTQVYEISNKESR 242
Query: 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXX 395
+ GNYS+Y+ K+A E + +EKQQ EI + +D + +
Sbjct: 243 RFVGNYSKYLDLKSALYEQEMKRYEKQQDEIAKLEDFVQK--NIARASTTKRAQSRRKQL 300
Query: 396 XXXXXXXXPF-QRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTA 454
P K F +SG V+ +K+ GY+ + + + RG+ A
Sbjct: 301 DRMELLTRPLGDSKSASFHFDIEKQSGNDVLQVKDATIGYDKDPIIEHVTMRLTRGDSVA 360
Query: 455 IIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA 514
++GPNG GKSTLLK I+ G+V G NV Y++Q QA L K VL + +
Sbjct: 361 LVGPNGIGKSTLLKSIVNKLPLLHGDVSFGS-NVSVGYYDQEQAN-LTSSKRVLNELWDE 418
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
+I+ +LG F D + + VS LSGG+KARLA K M++ S LL+LDEPTNHL
Sbjct: 419 YPLQPEKEIRTILGNFLFTGDDVLKPVSSLSGGQKARLALAKLMMQKSNLLILDEPTNHL 478
Query: 575 DIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626
D+ SKE+LE A+ +Y GT++ VSHDRYF+ ++ V+E+ Q+Y GDY+
Sbjct: 479 DLNSKEILENALIDYPGTLLFVSHDRYFINRVTTTVIELSTEGAQEYLGDYD 530
|
|
| TIGR_CMR|DET_0224 DET_0224 "ABC transporter, ATP-binding protein" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
Identities = 167/529 (31%), Positives = 271/529 (51%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKA 157
+ ++N+SKS+ ++ V +GKTT +IAG+ E D G +I
Sbjct: 2 LNIQNLSKSFGVRSLYTGVNLNIGARDRLALLGPNGSGKTTLFEMIAGRLEADEGKIILR 61
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
+ + +L Q+ + S + + + SA ++ K+ +Q L D + RL+
Sbjct: 62 RGTT-VGYLEQDIKPSSKQPLLKAVSSASDRLSSLSHKISLLQGELAEEKDGSE-NNRLM 119
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXX 277
+E LQ +A+ + + ++ LGF D DR + FS GW MR L K+
Sbjct: 120 NELGELQHSFEALGGYNAEQEAKLILAGLGFKPVDFDRPLHEFSGGWLMRAELAKLLFLS 179
Query: 278 XXXXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTY 337
EPTNHLDL++ W E YL + ++ SHDRAFL+ + TKI+ E +R Y
Sbjct: 180 PDILILDEPTNHLDLESTRWFESYLKQYSGSVLFTSHDRAFLNSIATKILSLEDQKARLY 239
Query: 338 EGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXXXX 397
GNY Y+ E+ + + +QQ I++ I R
Sbjct: 240 SGNYDSYLRERELRLNQLESQARRQQELIDKETKFIERFRYKATKASQVQSRIKKLDKLS 299
Query: 398 XXXXXXPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIG 457
P Q K++ FPE RSG V+ ++NL Y D +++ L + RG+K A++G
Sbjct: 300 AVAI--PRQTKKIHFNFPEPERSGHDVIKLRNLTKSYGDLVIYQGLELVLARGDKAALVG 357
Query: 458 PNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAED 517
PNG GK+TLLK++ G+ G LG NV YF Q E+L ++E + D
Sbjct: 358 PNGAGKTTLLKILAGVMPFDSGYRNLGA-NVNTAYFAQYYVESLSPANNLIEELETILPD 416
Query: 518 WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
++G+LG F D + +++S+LSGGEK RLA K ++KP+ L+++DEPTNHLDIP
Sbjct: 417 APEQQLRGMLGAFLFSGDDVKKRISVLSGGEKTRLAIAKMLLKPANLVLMDEPTNHLDIP 476
Query: 578 SKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626
++E+L +A+ YKGT+ ++HDR ++++ N+++EV+ ++ + GDY+
Sbjct: 477 AREILADALQAYKGTLCFITHDRTLIREVANKIIEVRNGKIRVFEGDYD 525
|
|
| TIGR_CMR|GSU_2093 GSU_2093 "ABC transporter, ATP-binding protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
Identities = 178/534 (33%), Positives = 274/534 (51%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKA 157
+ L NI+K + + +D +++ AGKTT RII G+EE D+G + A
Sbjct: 2 IHLSNITKQHGNQLLFRDASFQILPGSRTGLVGPNGAGKTTIFRIITGEEEVDAGEITCA 61
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
K I + SQ+ RT EE M+ E + +A +L+ ++ A+ +DD D M LL
Sbjct: 62 KRT-SIGYFSQDVGEMAGRTALEEVMAVSAETVRLAAELKEMEAAMAEPMDD-DAMAALL 119
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXX 277
+ + + + LD + ++ LG D D V SFS GW+MR++L I
Sbjct: 120 ERYGTAMEEFEHRGGYDLDTRARTILTGLGIGPDRYDHPVESFSGGWKMRIALAGILTLQ 179
Query: 278 XXXXXXXEPTNHLDLDTIEWLEGYL-GKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT 336
EPTNHLD+++I WLE +L G+ +++ SHDR F++++ T+I+E T
Sbjct: 180 PDVLLLDEPTNHLDVESIIWLEEWLAGEFTGALLMTSHDRDFMNRIVTRIIEVADKTVTT 239
Query: 337 YEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXXX 396
Y GNY Y E+ E A+ ++QQ + + ++ I R
Sbjct: 240 YGGNYDFYERERDIRREQLLASHKRQQEMLAKEEEFIARFAARASHAAQVQSRVKKLEKI 299
Query: 397 XXXXXXXPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE-----DRLLFNRANLTIERGE 451
P + + ++ F + RSG V L + ++ +F+ + I R
Sbjct: 300 DRIEI--PPEERVIRFEFNDPPRSGDDVAVFNGLAKSWSLPGGGEKSVFSGVSGVIRRQN 357
Query: 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETV 511
K A++G NG GKST LK++ G +P G V LG NV YF Q+ E LD KTV ETV
Sbjct: 358 KIAVVGVNGAGKSTFLKVLAGRTEPTDGSVALGA-NVSLGYFSQHAMELLDPKKTVFETV 416
Query: 512 AEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571
+A I I+ LLG F D +D+++ LSGGEK+R+ + +P LVLDEPT
Sbjct: 417 QDAMPLATIGVIRNLLGAFLFSGDAVDKRIENLSGGEKSRVVLATLLARPLNFLVLDEPT 476
Query: 572 NHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDY 625
NHLDI S+E+L +A+ + GTV+ VSHDR+F++ +V+RV E+ ++ Y G+Y
Sbjct: 477 NHLDIRSREILLDALQNFTGTVVLVSHDRHFLRLLVDRVFEIDHGEMRIYEGNY 530
|
|
| TIGR_CMR|BA_0228 BA_0228 "ABC transporter, ATP-binding protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
Identities = 173/549 (31%), Positives = 284/549 (51%)
Query: 100 LENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKS 159
+ N++KS+ G + ++++ E +GKTT +++ G E D+G I K
Sbjct: 6 VNNVTKSFGGNIIFENISLEIKNGERVGLVGRNGSGKTTIFQLLTGMESLDAG-AIHMKK 64
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
+I ++Q + S TV E SAFK E E+ ++ ++K + + ++ +L++
Sbjct: 65 GTRIGHVAQIPKFDESMTVYEVLSSAFKIEKELEREMRTLEKDMAEE-QESSVLQKLMER 123
Query: 220 FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXX 279
+ ++Q K + ++A + K+ L T + R S G Q ++SL +
Sbjct: 124 YGIIQEKFAFLGGYEIEANIMKVANGLQVT-ELFPRSFLELSGGEQTKVSLAYMLLQKPD 182
Query: 280 XXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEG 339
EPTNHLDL +EWLE +L + + +++ISHDR FLD++ TKI + E G Y
Sbjct: 183 LLLLDEPTNHLDLFAVEWLEQFLKEYNGTVMVISHDRYFLDEVVTKIFDLEDGEIHVYHT 242
Query: 340 NYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLXXXXXXXX------XXXXXXXXX 393
NYS++V EK + ++ A+++QQ++I++ K+ I RL
Sbjct: 243 NYSRFVEEKEERLLQEFQAYQEQQKKIKKMKEAIKRLREWANQANPPNEGLHKRARSMER 302
Query: 394 XXXXXXXXXXPF-QRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEK 452
P +RKQ+ ++F + RSG+ VV IK + G+ D LFN NL + E+
Sbjct: 303 ALERMQKLKKPILERKQIGLQFEGQDRSGKDVVVIKEVSKGFADHPLFNEVNLHVRFQER 362
Query: 453 TAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVA 512
AI+G NG GK+TLLKL++ +P GE+ +G +V Y Q+ + D VLE
Sbjct: 363 AAIVGRNGTGKTTLLKLLLEEIEPDAGEIRIGS-SVKIGYLSQHAYGNMKSD--VLEAFR 419
Query: 513 EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572
E + + +L + F + +KV+ LSGGEK RL + M + L+LDEPTN
Sbjct: 420 EYVAVTE-GEARHILAKFLFYGPAVFKKVTQLSGGEKMRLRLAQLMYQDINFLILDEPTN 478
Query: 573 HLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSLW 632
HLDI S+E+LEEA+ +Y GT++ VSHDRYF+ ++ + + L ++AG+Y + W
Sbjct: 479 HLDIESREVLEEALEQYNGTILAVSHDRYFLNKLFEKTYWIDEHKLFEFAGNYAWARQKW 538
Query: 633 FLTIEVSKI 641
+E I
Sbjct: 539 EERLETQVI 547
|
|
| UNIPROTKB|P0A9U3 ybiT "putative ATP-binding component of a transport system" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
Identities = 150/493 (30%), Positives = 253/493 (51%)
Query: 134 AGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIA 193
+GK+T ++I+ G EP GNV N +I L Q+ TV + + KE E+
Sbjct: 38 SGKSTFMKILGGDLEPTLGNV-SLDPNERIGKLRQDQFAFEEFTVLDTVIMGHKELWEVK 96
Query: 194 GKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253
+ +R+ E + +D G + + ++ K ++ + +A+ +L+ +G +
Sbjct: 97 QERDRIYALPEMSEED----GYKVADLEV---KYGEMDGYSAEARAGELLLGVGIPVEQH 149
Query: 254 DRLVASFSSGWQMRMSLGKIXXXXXXXXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIIS 313
++ + GW++R+ L + EPTN+LD+DTI WLE L ++D M+IIS
Sbjct: 150 YGPMSEVAPGWKLRVLLAQALFADPDILLLDEPTNNLDIDTIRWLEQVLNERDSTMIIIS 209
Query: 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLI 373
HDR FL+ +CT + + + G R Y GNY +Y+ E A K++ +I + + +
Sbjct: 210 HDRHFLNMVCTHMADLDYGELRVYPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFV 269
Query: 374 NRLXXXXXXXXXXXXXXXXXXXXXXXXXXXPFQRKQMKIRFPERGRSGRSVVTIKNLEFG 433
+R R+ IRF + + R+ + ++ L G
Sbjct: 270 SRFSANASKSRQATSRARQIDKIKLEEVKAS-SRQNPFIRFEQDKKLFRNALEVEGLTKG 328
Query: 434 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYF 493
+++ LF NL +E GEK A++G NG GKSTLLK ++G +P G V E N Y+
Sbjct: 329 FDNGPLFKNLNLLLEVGEKLAVLGTNGVGKSTLLKTLVGDLQPDSGTVKWSE-NARIGYY 387
Query: 494 EQNQAEALDLDKTVLETVAEAAEDWRIDD-IKGLLGRCNFKADMLDRKVSLLSGGEKARL 552
Q+ + D TV E +++ ++ + ++ +LGR F D + + +LSGGEK R+
Sbjct: 388 AQDHEYEFENDLTVFEWMSQWKQEGDDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRM 447
Query: 553 AFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVE 612
F K M++ +L++DEPTNHLD+ S E L A+ Y+GT+I VSHDR FV + R++E
Sbjct: 448 LFGKLMMQKPNILIMDEPTNHLDMESIESLNMALELYQGTLIFVSHDREFVSSLATRILE 507
Query: 613 VKGSNLQDYAGDY 625
+ + D++G+Y
Sbjct: 508 ITPERVIDFSGNY 520
|
|
| UNIPROTKB|Q9KRW4 VC1520 "ABC transporter, ATP-binding protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
Identities = 152/529 (28%), Positives = 265/529 (50%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKA 157
+ NI++ + + ++++ + GK+T ++I++G+ EP GNV
Sbjct: 2 ISTANITQQFGAKPLFENISVKFGEGNRYGLIGANGCGKSTFMKILSGELEPSGGNV-SY 60
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
N ++A L+Q+ TV + + KE ++ + +R+ AL ++ D M R+
Sbjct: 61 DPNERVAKLNQDQFAYEEFTVIDTVIMGHKELWKVKQERDRIY-ALPEMTEE-DGM-RVA 117
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXX 277
D L+ + ++ ++K +L+ +G + L++S + GW++R+ L +I
Sbjct: 118 D----LEVEFAEMDGYMAESKAGELLLAVGIPLEQHYGLMSSVAPGWKLRVLLAQILFAD 173
Query: 278 XXXXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTY 337
EPTN+LD+DTI WLE L ++ M+IISHDR FL+ +CT + + + G R Y
Sbjct: 174 PDIMLLDEPTNNLDIDTIRWLEDTLNARNCTMIIISHDRHFLNSVCTHMADLDYGELRIY 233
Query: 338 EGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXXXX 397
GNY +Y+ E + K++ +I + + + R
Sbjct: 234 PGNYDEYMTAATQARERLLSDNAKKKAQIAELQTFVARFSANASKAKQATSRARQIDKIK 293
Query: 398 XXXXXXPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIG 457
R+ IRF + R+ + ++NL G+ D LF+ N E GE+ AIIG
Sbjct: 294 LDEVKAS-SRQNPFIRFEQSKELFRNALIVENLSQGF-DHDLFSNFNAIFEVGERVAIIG 351
Query: 458 PNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAED 517
NG GK+TLL + G+ +PR G E++ + Y+ Q+ A D ++E + + ++
Sbjct: 352 ENGVGKTTLLNTLAGVLEPRSGMYKWSENSNI-GYYAQDHAHEFAEDLNLMEWMGQWRQE 410
Query: 518 WRIDDI-KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576
+ + + LGR F D + + V +LSGGE+ R+ K M+ +L+LDEPTNH+D+
Sbjct: 411 GDDEQVVRSFLGRMLFGQDDIKKSVKVLSGGEQGRMLLGKLMMHKPNMLLLDEPTNHMDM 470
Query: 577 PSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDY 625
S E L A+ +YKGT+ VSHDR FV + R++E++ + D+ G Y
Sbjct: 471 ESIESLNNALEQYKGTLFFVSHDRVFVDSLATRIIEIRDGKITDFKGTY 519
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| O05519 | YDIF_BACSU | No assigned EC number | 0.3781 | 0.8294 | 0.8333 | yes | no |
| Q8T6B7 | ABCF2_DICDI | No assigned EC number | 0.3213 | 0.8325 | 0.9055 | yes | no |
| Q9FIB4 | AB2F_ARATH | No assigned EC number | 0.7765 | 0.9410 | 0.8952 | no | no |
| Q9LV93 | AB5F_ARATH | No assigned EC number | 0.7948 | 0.9534 | 0.8887 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 645 | |||
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 0.0 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 1e-110 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-102 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-98 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 6e-95 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 5e-80 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 2e-68 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 3e-56 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-51 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-43 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 6e-35 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 2e-34 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-33 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-33 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-33 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 4e-33 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 3e-32 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-31 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 3e-31 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-30 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-30 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-30 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-30 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 5e-30 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 7e-30 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-29 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-29 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 3e-29 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-28 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 6e-28 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-27 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-27 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 4e-27 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 5e-27 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 6e-27 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 7e-27 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 8e-27 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 5e-26 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 9e-26 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-25 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-25 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-25 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-25 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-25 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 3e-25 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 4e-25 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 5e-25 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 8e-25 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 1e-24 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-24 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 3e-24 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-23 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-23 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-23 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-23 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-23 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-23 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-23 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 3e-23 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 6e-23 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 7e-23 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 8e-23 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 9e-23 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-22 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-22 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-22 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-22 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-22 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 3e-22 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 4e-22 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 5e-22 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 6e-22 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 7e-22 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-21 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-21 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-21 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-21 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-21 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 3e-21 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 3e-21 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 3e-21 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 3e-21 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 4e-21 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 6e-21 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-21 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 7e-21 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 8e-21 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 8e-21 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 9e-21 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 9e-21 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-20 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-20 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 1e-20 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-20 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-20 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-20 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-20 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 3e-20 | |
| pfam12848 | 85 | pfam12848, ABC_tran_2, ABC transporter | 3e-20 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-20 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 4e-20 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-20 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 4e-20 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 4e-20 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 5e-20 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 5e-20 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 6e-20 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 7e-20 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-19 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 1e-19 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-19 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-19 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-19 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-19 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-19 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-19 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-19 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 3e-19 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 3e-19 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 3e-19 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-19 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-19 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 4e-19 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 4e-19 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 4e-19 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 5e-19 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 7e-19 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 8e-19 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-18 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-18 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-18 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-18 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-18 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-18 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-18 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-18 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-18 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-18 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-18 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-18 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 3e-18 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-18 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 4e-18 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 5e-18 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 5e-18 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 6e-18 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 6e-18 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 6e-18 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 6e-18 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 6e-18 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 7e-18 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 7e-18 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 8e-18 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 9e-18 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 9e-18 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 9e-18 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-17 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-17 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 1e-17 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 1e-17 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-17 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-17 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 2e-17 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-17 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-17 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-17 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-17 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 2e-17 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 3e-17 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 3e-17 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 4e-17 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 4e-17 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 4e-17 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 4e-17 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 5e-17 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 5e-17 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 6e-17 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 6e-17 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 6e-17 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 7e-17 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 7e-17 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 7e-17 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 8e-17 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 9e-17 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 9e-17 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 9e-17 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-16 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-16 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-16 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-16 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-16 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-16 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-16 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-16 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-16 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-16 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-16 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-16 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 3e-16 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-16 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 3e-16 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 3e-16 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 4e-16 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 4e-16 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 4e-16 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 4e-16 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 5e-16 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 6e-16 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 6e-16 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 7e-16 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 9e-16 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 9e-16 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-15 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-15 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-15 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-15 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-15 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-15 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-15 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 2e-15 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 3e-15 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 4e-15 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 4e-15 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 4e-15 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 4e-15 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 5e-15 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 6e-15 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 6e-15 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 6e-15 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 6e-15 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 7e-15 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 7e-15 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 7e-15 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 7e-15 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 8e-15 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 8e-15 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 9e-15 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 9e-15 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-14 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 1e-14 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 1e-14 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 1e-14 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 1e-14 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-14 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-14 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-14 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-14 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-14 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-14 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-14 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-14 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-14 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-14 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 3e-14 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 3e-14 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 3e-14 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 4e-14 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 4e-14 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 5e-14 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 5e-14 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 5e-14 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 6e-14 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 6e-14 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 8e-14 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 9e-14 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 9e-14 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-13 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-13 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 1e-13 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-13 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-13 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-13 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-13 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-13 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-13 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-13 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-13 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 2e-13 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-13 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-13 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 2e-13 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 3e-13 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 3e-13 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 3e-13 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 3e-13 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-13 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 3e-13 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 3e-13 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 4e-13 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 5e-13 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 5e-13 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 5e-13 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 5e-13 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 5e-13 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 6e-13 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 7e-13 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 8e-13 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 8e-13 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 8e-13 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 1e-12 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-12 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-12 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 1e-12 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-12 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-12 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-12 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-12 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-12 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-12 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-12 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-12 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 2e-12 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 3e-12 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 3e-12 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 3e-12 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 3e-12 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-12 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 3e-12 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 4e-12 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 4e-12 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 4e-12 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 5e-12 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 5e-12 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 5e-12 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 5e-12 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 6e-12 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 6e-12 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 7e-12 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 7e-12 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 8e-12 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 8e-12 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 9e-12 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 9e-12 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-11 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-11 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-11 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-11 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-11 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-11 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-11 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 1e-11 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-11 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-11 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-11 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-11 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-11 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-11 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 3e-11 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 3e-11 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 4e-11 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 4e-11 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 4e-11 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 4e-11 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 5e-11 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 5e-11 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 6e-11 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 6e-11 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 6e-11 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 7e-11 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 7e-11 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 7e-11 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 7e-11 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-10 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-10 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-10 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-10 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-10 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-10 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-10 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-10 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 2e-10 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-10 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-10 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-10 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-10 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-10 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 3e-10 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 3e-10 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 3e-10 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 3e-10 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 3e-10 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 3e-10 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 4e-10 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 4e-10 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 4e-10 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 4e-10 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 4e-10 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 5e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 5e-10 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 5e-10 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 5e-10 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 5e-10 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 5e-10 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 6e-10 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 6e-10 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 7e-10 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 7e-10 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 7e-10 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 7e-10 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 8e-10 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 8e-10 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 8e-10 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 9e-10 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-09 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 1e-09 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 1e-09 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-09 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-09 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 1e-09 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 1e-09 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-09 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 2e-09 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-09 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 2e-09 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-09 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 3e-09 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-09 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 3e-09 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 3e-09 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 4e-09 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 4e-09 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 4e-09 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 4e-09 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 4e-09 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 5e-09 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 5e-09 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 5e-09 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 6e-09 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 7e-09 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 7e-09 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 7e-09 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 7e-09 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 8e-09 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 8e-09 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 8e-09 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 9e-09 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 9e-09 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-08 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-08 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-08 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 1e-08 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 1e-08 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-08 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 1e-08 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 1e-08 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-08 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-08 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-08 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-08 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-08 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 2e-08 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-08 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-08 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 2e-08 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-08 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 2e-08 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-08 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 3e-08 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 3e-08 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 3e-08 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 3e-08 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 4e-08 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-08 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 4e-08 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 4e-08 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 5e-08 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 5e-08 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 6e-08 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 6e-08 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 6e-08 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 6e-08 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 6e-08 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 7e-08 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 7e-08 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 7e-08 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 7e-08 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 9e-08 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-07 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-07 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 1e-07 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 1e-07 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 1e-07 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-07 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-07 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 2e-07 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-07 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-07 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 2e-07 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-07 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-07 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-07 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 3e-07 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-07 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 3e-07 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| cd03278 | 197 | cd03278, ABC_SMC_barmotin, ATP-binding cassette do | 4e-07 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 5e-07 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 5e-07 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 5e-07 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 5e-07 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 5e-07 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 5e-07 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 5e-07 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 5e-07 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 5e-07 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 6e-07 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 6e-07 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 6e-07 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 7e-07 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 7e-07 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 8e-07 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 8e-07 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 8e-07 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 8e-07 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 9e-07 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 9e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 9e-07 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-06 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 1e-06 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 1e-06 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 1e-06 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 1e-06 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 1e-06 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-06 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-06 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-06 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-06 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-06 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 2e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-06 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 2e-06 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-06 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-06 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 3e-06 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 3e-06 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 3e-06 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 3e-06 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 4e-06 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 4e-06 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 5e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 5e-06 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 5e-06 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 6e-06 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 7e-06 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 8e-06 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 9e-06 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-05 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-05 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-05 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-05 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-05 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-05 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 2e-05 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 3e-05 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 3e-05 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 3e-05 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 4e-05 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 4e-05 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 4e-05 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 5e-05 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 6e-05 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 6e-05 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 6e-05 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 7e-05 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 7e-05 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 7e-05 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 8e-05 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 8e-05 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 8e-05 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 9e-05 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 1e-04 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-04 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-04 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-04 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-04 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 2e-04 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-04 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 2e-04 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 2e-04 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 2e-04 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 3e-04 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-04 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 3e-04 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 4e-04 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 4e-04 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 4e-04 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 4e-04 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 4e-04 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 5e-04 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 5e-04 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 5e-04 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 6e-04 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 7e-04 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 7e-04 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 8e-04 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 8e-04 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 0.001 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 0.001 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 0.001 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 0.001 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 0.001 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 0.001 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 0.001 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 0.002 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 0.002 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 0.002 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 0.002 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.002 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.002 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 0.003 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 0.003 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 0.003 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 0.003 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 0.003 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 0.003 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.003 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 0.003 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.003 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 0.004 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 0.004 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 0.004 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 0.004 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 0.004 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 0.004 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 0.004 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 0.004 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 538 bits (1389), Expect = 0.0
Identities = 223/532 (41%), Positives = 334/532 (62%), Gaps = 19/532 (3%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
LEN+S +Y +L++V+ + GE++GLVG NGAGK+T L+I+AG+ EPDSG V + K
Sbjct: 5 TLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK 64
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
+++ +LSQE + +TV + + F E E+ +LE L A D +L+ L
Sbjct: 65 -GLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALL--ADPDDELLAELEA 121
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
+ L TL+A+ + + LGF +D R V+S S GW+ R++L + LL++P
Sbjct: 122 LLEELDG-------WTLEARAEEALLGLGFPDED--RPVSSLSGGWRRRVALARALLEEP 172
Query: 279 DLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYE 338
DLLLLDEPTNHLDL++IEWLE YL + ++++SHDR FLD + T I+E + G Y+
Sbjct: 173 DLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYK 232
Query: 339 GNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGAN-SGRASSAEKKLERLQE 397
GNYS Y+ +KA + + AA+EKQQ+E+ + ++ I R A A+ + +A S K+LE+L+
Sbjct: 233 GNYSSYLEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEA 292
Query: 398 EEQIEKPFQR-KQMKIRF-PERGRSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTA 454
E+P + K + RF P R G+ V+ +N+ GY+ RLL + I+RG++ A
Sbjct: 293 RLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIA 352
Query: 455 IIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA 514
I+GPNG GKSTLLKL+ G P G V +GE V YF+Q++ E LD DKTVLE ++E
Sbjct: 353 IVGPNGAGKSTLLKLLAGELGPLSGTVKVGE-TVKIGYFDQHRDE-LDPDKTVLEELSEG 410
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
D +++ LGR F + ++ V +LSGGEKARL K +++P LL+LDEPTNHL
Sbjct: 411 FPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHL 470
Query: 575 DIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626
DI S E LEEA+ +++GTV+ VSHDRYF+ ++ R+ V+ ++++ G Y
Sbjct: 471 DIESLEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYE 521
|
Length = 530 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 342 bits (879), Expect = e-110
Identities = 184/539 (34%), Positives = 298/539 (55%), Gaps = 48/539 (8%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGE--KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
ENIS VK G + GL+G NG GK+T ++I+ G EP +GNV
Sbjct: 18 ENIS---------------VKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLD- 61
Query: 159 SNMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
N ++ L Q+ FE TV + + E E+ + +R+ E + +D +
Sbjct: 62 PNERLGKLRQDQFAFE---EFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVAD 118
Query: 216 LLDEFDLLQRKAQAVNLD--TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
L +F +D T +A+ +L+ +G + L++ + GW++R+ L +
Sbjct: 119 LEVKF---------AEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQA 169
Query: 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333
L +PD+LLLDEPTN+LD++TI WLE L +++ M+IISHDR FL+ +CT + + + G
Sbjct: 170 LFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGE 229
Query: 334 SRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGR-ASSAEKKL 392
R Y GNY +Y+ E A K++ +I + + ++R A A+ + A+S K++
Sbjct: 230 LRVYPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKAKQATSRAKQI 289
Query: 393 ERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEK 452
++++ EE KP R+ IRF + + R+ + ++NL G+++ LF NL +E GE+
Sbjct: 290 DKIKLEEV--KPSSRQNPFIRFEQDKKLHRNALEVENLTKGFDNGPLFKNLNLLLEAGER 347
Query: 453 TAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVA 512
AIIG NG GK+TLL+ ++G +P G V E N Y+ Q+ A + D T+ + ++
Sbjct: 348 LAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-NANIGYYAQDHAYDFENDLTLFDWMS 406
Query: 513 EAAEDWRI--DD---IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567
+ WR DD ++G LGR F D + + V +LSGGEK R+ F K M++ +LV+
Sbjct: 407 Q----WRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVM 462
Query: 568 DEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626
DEPTNH+D+ S E L A+ +Y+GT+I VSHDR FV + R++E+ + D++G Y
Sbjct: 463 DEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYE 521
|
Length = 530 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 322 bits (828), Expect = e-102
Identities = 174/539 (32%), Positives = 282/539 (52%), Gaps = 29/539 (5%)
Query: 102 NISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
+SK +LKD++ G K+G++G+NGAGK+T LRI+AG ++ +G A
Sbjct: 9 RVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-G 67
Query: 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEF 220
+K+ +L QE ++ ++TVRE E + + + DMD LL E
Sbjct: 68 IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMD---ALLAEQ 124
Query: 221 DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280
LQ A + LD K+ M L D D V S G + R++L ++LL PD+
Sbjct: 125 AELQEIIDAADAWDLDRKLEIAMDALRCPPWDAD--VTKLSGGERRRVALCRLLLSKPDM 182
Query: 281 LLLDEPTNHLDLDTIEWLEGYLGKQDVP--MVIISHDRAFLDQLCTKIVETEMGVSRTYE 338
LLLDEPTNHLD +++ WLE +L Q+ P +V ++HDR FLD + I+E + G +E
Sbjct: 183 LLLDEPTNHLDAESVAWLEQHL--QEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWE 240
Query: 339 GNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEE 398
GNYS ++ +K +E + +Q+ +++ + + R A ++ + + E L +
Sbjct: 241 GNYSSWLEQKEKRLEQEEKEESARQKALKRELEWV-RSSPKARQAKSKARLARYEELLSQ 299
Query: 399 EQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGP 458
E ++ + +I P R G V+ +NL G+ D+LL + + + G +IGP
Sbjct: 300 EFQKRN---ETAEIYIPPGPRLGDKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGP 356
Query: 459 NGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDW 518
NG GKSTL ++I G E+P G + +GE V Y +Q++ +ALD +KTV E ++ +
Sbjct: 357 NGAGKSTLFRMITGQEQPDSGTIKIGE-TVKLAYVDQSR-DALDPNKTVWEEISGGLDII 414
Query: 519 RIDDI----KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
++ + +GR NFK +KV LSGGE+ R+ K + +L+LDEPTN L
Sbjct: 415 QLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDL 474
Query: 575 DIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGS--------NLQDYAGDY 625
D+ + LEEA+ E+ G + +SHDR+F+ +I ++ +G N +Y D
Sbjct: 475 DVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEEDK 533
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 312 bits (801), Expect = 2e-98
Identities = 168/497 (33%), Positives = 267/497 (53%), Gaps = 20/497 (4%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171
+LKD++ G K+G++G+NGAGK+T LRI+AG ++ G A +K+ +L QE +
Sbjct: 22 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-GIKVGYLPQEPQ 80
Query: 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231
+ +TVRE E + + A D D L E LQ A +
Sbjct: 81 LDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFD---ALAAEQGELQEIIDAAD 137
Query: 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
LD+++ M L D V S G + R++L ++LL+ PD+LLLDEPTNHLD
Sbjct: 138 AWDLDSQLEIAMDALRCPPWDAK--VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 195
Query: 292 LDTIEWLEGYLGKQDVP--MVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKA 349
+++ WLE +L D P +V ++HDR FLD + I+E + G +EGNYS ++ +KA
Sbjct: 196 AESVAWLEQFL--HDYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLEQKA 253
Query: 350 AWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQ 409
+ + +Q+ +++ + + R A ++ + + E L EE ++ +
Sbjct: 254 KRLAQEEKQEAARQKALKRELEWV-RQSPKARQAKSKARLARYEELLSEEYQKRN---ET 309
Query: 410 MKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKL 469
+I P R G V+ +NL + DRLL + + ++ G IIGPNG GKSTL K+
Sbjct: 310 NEIFIPPGPRLGDKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKM 369
Query: 470 IMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI----KG 525
I G E+P G + +GE V Y +Q++ +ALD +KTV E ++ + ++ + +
Sbjct: 370 ITGQEQPDSGTIKIGE-TVKLAYVDQSR-DALDPNKTVWEEISGGLDIIKVGNREIPSRA 427
Query: 526 LLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585
+GR NFK +KV +LSGGE+ RL K + + +L+LDEPTN LD+ + LEEA
Sbjct: 428 YVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEA 487
Query: 586 ISEYKGTVITVSHDRYF 602
+ E+ G + +SHDR+F
Sbjct: 488 LLEFPGCAVVISHDRWF 504
|
Length = 556 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 304 bits (782), Expect = 6e-95
Identities = 186/527 (35%), Positives = 291/527 (55%), Gaps = 43/527 (8%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ + S+ +L + ++ E+V LVG NGAGK+T ++I+ G+ D G +I
Sbjct: 4 ISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYE 63
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
+ ++ +A L Q+ ++ TV + F++ EE A L+R D + L
Sbjct: 64 Q-DLIVARLQQDPPRNVEGTVYD-FVAEGIEE--QAEYLKRYHDISHLVETDP--SEKNL 117
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
+E LQ + NL L+ ++++++ +LG D D ++S S GW + +LG+ L+ +
Sbjct: 118 NELAKLQEQLDHHNLWQLENRINEVLAQLGL---DPDAALSSLSGGWLRKAALGRALVSN 174
Query: 278 PDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTY 337
PD+LLLDEPTNHLD++TIEWLEG+L ++ ISHDR+F+ + T+IV+ + G +Y
Sbjct: 175 PDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSY 234
Query: 338 EGNYSQYVLEKAAWI---ESQYAAWEKQ--QRE--IEQTKDLINRLGAGA----NSGRAS 386
GNY QY+LEK + E Q A ++++ Q E I Q G A N GR
Sbjct: 235 PGNYDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQ--------GIKARRTRNEGRV- 285
Query: 387 SAEKKL--ERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRAN 444
A K L ER + E + K++ E RSG+ V ++N+ + + + L +
Sbjct: 286 RALKALRRERSERREVMGT------AKMQVEEASRSGKIVFEMENVNYQIDGKQLVKDFS 339
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLD 504
++RG+K A+IGPNGCGK+TLLKL++G + G + G + YF+Q++AE LD +
Sbjct: 340 AQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVA-YFDQHRAE-LDPE 397
Query: 505 KTVLETVAEAAEDWRIDDIK----GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560
KTV++ +AE ++ ++ G L F V LSGGE+ RL + +K
Sbjct: 398 KTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLK 457
Query: 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIV 607
PS LL+LDEPTN LD+ + E+LEE + Y+GTV+ VSHDR FV V
Sbjct: 458 PSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTV 504
|
Length = 635 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 265 bits (679), Expect = 5e-80
Identities = 172/526 (32%), Positives = 280/526 (53%), Gaps = 24/526 (4%)
Query: 108 KGVTVLKD-VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFL 166
+GV VL D T + G+KVGLVG NG GK+T L ++ + D G+ N ++A++
Sbjct: 11 RGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSY-TFPGNWQLAWV 69
Query: 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRK 226
+QE ++ + E + +E +++ L A + D G + + K
Sbjct: 70 NQE-TPALPQPALEYVIDGDRE-------YRQLEAQLHDANERND--GHAIA---TIHGK 116
Query: 227 AQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEP 286
A++ T+ ++ + L+ LGF+ + +R V+ FS GW+MR++L + L+ DLLLLDEP
Sbjct: 117 LDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEP 176
Query: 287 TNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346
TNHLDLD + WLE +L +++ISHDR FLD + KI+ E Y GNYS + +
Sbjct: 177 TNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEV 236
Query: 347 EKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGR-ASSAEKKLERLQ--EEEQIEK 403
++A + Q A +E QQ + + I+R A A + A S K LER++ ++
Sbjct: 237 QRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDN 296
Query: 404 PFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGK 463
PF R PE + ++ ++ + GY DR++ + L + G + ++G NG GK
Sbjct: 297 PF---HFSFRAPESLPN--PLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGK 351
Query: 464 STLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI 523
STL+KL+ G P GE+ L + L YF Q+Q E L D++ L+ +A A +
Sbjct: 352 STLIKLLAGELAPVSGEIGLAKGIKL-GYFAQHQLEFLRADESPLQHLARLAPQELEQKL 410
Query: 524 KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583
+ LG F+ D + + SGGEKARL + + LL+LDEPTNHLD+ ++ L
Sbjct: 411 RDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALT 470
Query: 584 EAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629
EA+ +++G ++ VSHDR+ ++ + + V ++ + GD Q
Sbjct: 471 EALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516
|
Length = 638 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 236 bits (603), Expect = 2e-68
Identities = 161/539 (29%), Positives = 266/539 (49%), Gaps = 31/539 (5%)
Query: 82 YSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLR 141
Y N N G +I + +EN S S G ++ D + + G GLVG NG GKTT LR
Sbjct: 163 YVNHDGNGGGPAIKD-IHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLR 221
Query: 142 IIAGQEEPDSGNVIKAKSNMKIAFLSQEF--------------EVSMSRTVREEF-MSAF 186
+A + N +I + QE ++ ++ + EE + A
Sbjct: 222 YMAMHA------IDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQ 275
Query: 187 KEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246
+ E+E + + + A + VD D + + L+E + ++ + ++ T +A+ + ++ L
Sbjct: 276 QRELEFETETGKGKGANKDGVDK-DAVSQRLEE---IYKRLELIDAYTAEARAASILAGL 331
Query: 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQD 306
FT + + +FS GW+MR++L + L +PDLLLLDEPTNHLDL + WLE YL K
Sbjct: 332 SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWP 391
Query: 307 VPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREI 366
+++SH R FL+ + T I+ TY+G+Y + + +++Q A+E +R
Sbjct: 392 KTFIVVSHAREFLNTVVTDILHLHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERSR 451
Query: 367 EQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPE-RGRSGRSVV 425
+ I++ N+ RAS + +++ L ++ K FP R G ++
Sbjct: 452 SHMQAFIDKF--RYNAKRASLVQSRIKALDRLGHVDAVVNDPDYKFEFPTPDDRPGPPII 509
Query: 426 TIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ + FGY LLF N I+ + A++GPNG GKST+LKLI G +P G V
Sbjct: 510 SFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRS 569
Query: 485 EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLL 544
V F Q+ + LDL L + ++ LG ++ + + L
Sbjct: 570 A-KVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTL 628
Query: 545 SGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFV 603
SGG+K+R+AF K K +L+LDEP+NHLD+ + E L + + ++G V+ VSHD + +
Sbjct: 629 SGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLI 687
|
Length = 718 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 186 bits (476), Expect = 3e-56
Identities = 73/191 (38%), Positives = 96/191 (50%), Gaps = 49/191 (25%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++NL Y +LL +LTI G++ ++G NG GKSTLLKLI G +P G V G
Sbjct: 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG 60
Query: 485 EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLL 544
V YFEQ L
Sbjct: 61 -STVKIGYFEQ------------------------------------------------L 71
Query: 545 SGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVK 604
SGGEK RLA K +++ LL+LDEPTNHLD+ S E LEEA+ EY GTVI VSHDRYF+
Sbjct: 72 SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLD 131
Query: 605 QIVNRVVEVKG 615
Q+ +++E++
Sbjct: 132 QVATKIIELED 142
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 185 bits (471), Expect = 4e-51
Identities = 84/237 (35%), Positives = 117/237 (49%), Gaps = 37/237 (15%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
S++T++NL Y DR L +LT+ GE+ ++G NG GKSTLLK++ G +P GEV
Sbjct: 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT 61
Query: 483 LGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWR-------------IDDIKGLLGR 529
+ Y Q LD +KTVL+ V E + R D LL
Sbjct: 62 R-PKGLRVGYLSQEP--PLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAE 118
Query: 530 CNFKADMLD---------------------RKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568
+ LD R VS LSGG + R+A + +++ LL+LD
Sbjct: 119 LEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLD 178
Query: 569 EPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDY 625
EPTNHLD+ S E LE+ + Y GTVI VSHDRYF+ + ++E+ L Y G+Y
Sbjct: 179 EPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNY 235
|
Length = 530 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 3e-43
Identities = 117/564 (20%), Positives = 221/564 (39%), Gaps = 118/564 (20%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD--- 150
+++EN++ + V ++DV++EV+ GE +G+VG +G+GK+T + G
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 151 -SGNVIKAKSNMKIAFLSQEFEVSMSRT--VREEFMSAFKEEMEIAGKLERVQKALESAV 207
SG VI ++ + ++ R + ++ M++ M I ++ +
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS 125
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS-FSSGWQM 266
+ + +AV +L+ ++G + S G +
Sbjct: 126 RA--------------EARKRAV----------ELLEQVGLPDPERRDRYPHQLSGGMRQ 161
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQL 322
R+ + L P LL+ DEPT LD+ T ++ L+ + + ++ I+HD + +L
Sbjct: 162 RVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAEL 221
Query: 323 CTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANS 382
++V V+ K +E+ + T+ L+ +
Sbjct: 222 ADRVV-----------------VMYKGEIVETGPTEEILSNPQHPYTRGLLAAV------ 258
Query: 383 GRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERG-RSGRSVVTIKNLEFGYEDR-LLF 440
P + IR P RG +++++NL Y R LF
Sbjct: 259 ---------------------PRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLF 297
Query: 441 NRA----------NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP 490
R + + GE ++G +G GKSTL +++ GL P G ++ ++
Sbjct: 298 VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDL 357
Query: 491 NYFE------------QNQAEALDLDKTVLETVAEA-------AEDWRIDDIKGLLGRCN 531
E Q+ +L+ TV + +AE + R + LL
Sbjct: 358 TGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVG 417
Query: 532 FKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK----EMLEEAIS 587
+ LDR LSGG++ R+A + + LL+LDEP + LD+ + +L++
Sbjct: 418 LPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQE 477
Query: 588 EYKGTVITVSHDRYFVKQIVNRVV 611
E T + +SHD V+ I +RV
Sbjct: 478 ELGLTYLFISHDLAVVRYIADRVA 501
|
Length = 539 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 6e-35
Identities = 62/178 (34%), Positives = 94/178 (52%), Gaps = 25/178 (14%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
++NL GY R + + +L+IE GE I+GPNG GKSTLLK + GL KP GE+LL
Sbjct: 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG 60
Query: 486 HNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLS 545
++ +L + + V +A E + A + DR + LS
Sbjct: 61 KDL-------ASLSPKELARKIA-YVPQALELLGL-------------AHLADRPFNELS 99
Query: 546 GGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK-EMLE--EAISEYKG-TVITVSHD 599
GGE+ R+ + + + +L+LDEPT+HLDI + E+LE ++ +G TV+ V HD
Sbjct: 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHD 157
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 2e-34
Identities = 74/257 (28%), Positives = 128/257 (49%), Gaps = 51/257 (19%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+++EN++K + + K++ ++ GE++ ++G NG GKTT LR + G+ EPDSG +K
Sbjct: 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSG-TVKW 378
Query: 158 KSNMKIAFLSQ----EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
N I + +Q +FE ++ ++MS +++E E AV +
Sbjct: 379 SENANIGYYAQDHAYDFENDLTLF---DWMSQWRQE-----------GDDEQAVRGT--L 422
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
GRLL F+ DD + V S G + RM GK+
Sbjct: 423 GRLL------------------------------FSQDDIKKSVKVLSGGEKGRMLFGKL 452
Query: 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333
++Q P++L++DEPTNH+D+++IE L L K + ++ +SHDR F+ L T+I+E
Sbjct: 453 MMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDG 512
Query: 334 SRTYEGNYSQYVLEKAA 350
+ G Y +Y+ +
Sbjct: 513 VVDFSGTYEEYLRSQGI 529
|
Length = 530 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 1e-33
Identities = 61/195 (31%), Positives = 91/195 (46%), Gaps = 47/195 (24%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
I+NL F Y R + +LT++ GE A++GPNG GKSTLL+ I GL KP GE+L+
Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG 60
Query: 486 HNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSL-- 543
++ E+ L R++
Sbjct: 61 KDIAKLPLEE-----------------------------------------LRRRIGYVP 79
Query: 544 -LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHD 599
LSGG++ R+A + ++ LL+LDEPT+ LD S+E L E + E TVI V+HD
Sbjct: 80 QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHD 139
Query: 600 RYFVKQIVNRVVEVK 614
+ +RV+ +K
Sbjct: 140 PELAELAADRVIVLK 154
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 1e-33
Identities = 67/206 (32%), Positives = 101/206 (49%), Gaps = 23/206 (11%)
Query: 427 IKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+KNL F Y D R + +LTI++GE I+GPNG GKSTLL+L+ GL P GEVL+
Sbjct: 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVD 61
Query: 485 EHNVLPNYFE----------QNQAEALDLDKTVLETVAEAAE------DWRIDDIKGLLG 528
++ + QN + TV E VA E + + ++ L
Sbjct: 62 GKDLTKLSLKELRRKVGLVFQN-PDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALE 120
Query: 529 RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE 588
+ + DR LSGG+K R+A + +L+LDEPT LD + L E + +
Sbjct: 121 LVGLE-GLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKK 179
Query: 589 YKG---TVITVSHDRYFVKQIVNRVV 611
K T+I V+HD + ++ +RV+
Sbjct: 180 LKAEGKTIIIVTHDLDLLLELADRVI 205
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 3e-33
Identities = 69/244 (28%), Positives = 114/244 (46%), Gaps = 54/244 (22%)
Query: 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI- 155
+++ N++K Y G T L V++EV+ GE GL+G NGAGKTT L+I+AG +P SG ++
Sbjct: 5 IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILV 64
Query: 156 --------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
AK +I ++ QE + TVR E +E +L + K
Sbjct: 65 LGYDVVKEPAKVRRRIGYVPQEPSLYPELTVR--------ENLEFFARLYGLSKE----- 111
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+ + + LL+ F L D ++ V + S G + R
Sbjct: 112 EAEERIEELLELFGL---------------------------EDKANKKVRTLSGGMKQR 144
Query: 268 MSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323
+S+ LL DP+LL+LDEPT+ LD + E L + V +++ +H ++LC
Sbjct: 145 LSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELC 204
Query: 324 TKIV 327
+++
Sbjct: 205 DRVI 208
|
Length = 293 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 4e-33
Identities = 69/203 (33%), Positives = 103/203 (50%), Gaps = 31/203 (15%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ ++NL FGY + + + + +I +GE T I+GPNG GKSTLLK + GL KP+ GEVL
Sbjct: 1 MMLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60
Query: 483 LGEHNV--LPN--------YFEQNQAEALDLDKTVLETVA------------EAAEDWRI 520
L ++ L Y Q+ + L TV E V + ED I
Sbjct: 61 LDGKDIASLSPKELAKKLAYVPQSPSAPFGL--TVYELVLLGRYPHLGLFGRPSKEDEEI 118
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK- 579
++ L + DR V LSGGE+ R+ + + + + +L+LDEPT+HLDI +
Sbjct: 119 --VEEALELLGL-EHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQI 175
Query: 580 ---EMLEEAISEYKGTVITVSHD 599
E+L + E TV+ V HD
Sbjct: 176 EVLELLRDLNREKGLTVVMVLHD 198
|
Length = 258 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 3e-32
Identities = 63/210 (30%), Positives = 103/210 (49%), Gaps = 25/210 (11%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ ++NL Y +R + +L++E+GE TA+IGPNG GKSTLLK I+GL KP GE+ +
Sbjct: 4 MIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKI 63
Query: 484 GEHNVLPN-------YFEQNQAEALDLDKTVLETVA------------EAAEDWRIDDIK 524
V Y Q + TV + V +D +
Sbjct: 64 FGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK--VD 121
Query: 525 GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEE 584
L R + D+ DR++ LSGG+K R+ + + + LL+LDEP +D+ ++ + +
Sbjct: 122 EALERVGME-DLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYD 180
Query: 585 AISEYKG---TVITVSHDRYFVKQIVNRVV 611
+ E + TV+ V+HD V +RV+
Sbjct: 181 LLKELRQEGKTVLMVTHDLGLVMAYFDRVI 210
|
Length = 254 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 1e-31
Identities = 66/219 (30%), Positives = 104/219 (47%), Gaps = 31/219 (14%)
Query: 424 VVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
++ +KN+ Y A NL IE GE AI+GP+G GKSTLL L+ GL+KP G
Sbjct: 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60
Query: 480 EVLLGEHNVLPNYFEQNQAEALDLDK--------------TVLETVAEAAE------DWR 519
EVL+ ++ + + L K TVLE V R
Sbjct: 61 EVLINGKDL--TKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRR 118
Query: 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK 579
+ LL + +L +K S LSGG++ R+A + ++ +++ DEPT +LD +
Sbjct: 119 KRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTA 178
Query: 580 EMLEEAIS----EYKGTVITVSHDRYFVKQIVNRVVEVK 614
+ + E + E T+I V+HD + + +RV+E+K
Sbjct: 179 KEVLELLRELNKERGKTIIMVTHDP-ELAKYADRVIELK 216
|
Length = 226 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 3e-31
Identities = 57/214 (26%), Positives = 102/214 (47%), Gaps = 33/214 (15%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLGE 485
+++L Y + + ++ GE AI+GPNG GKSTLLK I+GL KP G + + G+
Sbjct: 2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGK 61
Query: 486 HNVLPN----YFEQNQAEALDLDK----TVLETVAEA------------AEDW-RIDDIK 524
Y Q +D+ +V + V D ++D+
Sbjct: 62 PLEKERKRIGYVPQR----RSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEAL 117
Query: 525 GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEE 584
+G +++ DR++ LSGG++ R+ + +V+ LL+LDEP +D ++E + E
Sbjct: 118 ERVGL----SELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYE 173
Query: 585 AISEYKG---TVITVSHDRYFVKQIVNRVVEVKG 615
+ E + T++ V+HD V + +RV+ +
Sbjct: 174 LLRELRREGMTILVVTHDLGLVLEYFDRVLLLNR 207
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 2e-30
Identities = 83/252 (32%), Positives = 129/252 (51%), Gaps = 50/252 (19%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++ EN+SK + ++ D+++++ G VG++G NGAGK+T R+I GQE+PDSG IK
Sbjct: 323 IEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSG-TIKI 381
Query: 158 KSNMKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
+K+A++ Q + + ++TV E EI+G L+ +Q + ++ R
Sbjct: 382 GETVKLAYVDQSRDALDPNKTVWE----------EISGGLDIIQ------LGKREVPSR- 424
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
A V + F D + V S G + R+ L K L
Sbjct: 425 --------------------AYVGR----FNFKGSDQQKKVGQLSGGERNRVHLAKTLKS 460
Query: 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVP--MVIISHDRAFLDQLCTKIVETEMGVS 334
++LLLDEPTN LD++T+ LE L + V+ISHDR FLD++ T I+ E G S
Sbjct: 461 GGNVLLLDEPTNDLDVETLRALEEAL--LEFAGCAVVISHDRWFLDRIATHILAFE-GDS 517
Query: 335 RT--YEGNYSQY 344
+EGNYS+Y
Sbjct: 518 HVEWFEGNYSEY 529
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 2e-30
Identities = 73/223 (32%), Positives = 102/223 (45%), Gaps = 53/223 (23%)
Query: 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLE 509
G K ++G NG GKSTLL+++ G++K GE + Y Q LD KTV E
Sbjct: 31 GAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-GIKVGYLPQE--PQLDPTKTVRE 87
Query: 510 TVAEAAEDWRIDDIKGLLGRCNF--------KADM---------------------LDRK 540
V E + IK L R N ADM LDRK
Sbjct: 88 NVEEGVAE-----IKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRK 142
Query: 541 ----------------VSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEE 584
V+ LSGGE+ R+A C+ ++ +L+LDEPTNHLD S LE+
Sbjct: 143 LEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQ 202
Query: 585 AISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQ 627
+ EY GTV+ V+HDRYF+ + ++E+ + G+Y+
Sbjct: 203 HLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSS 245
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-30
Identities = 56/205 (27%), Positives = 92/205 (44%), Gaps = 43/205 (20%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++NL Y + + +LT+E+GE ++GPNG GK+TL+K+I+GL KP GE+ +
Sbjct: 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVL 60
Query: 485 EHNVLPNYFEQN-------QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML 537
++ E + +L + TV E +
Sbjct: 61 GKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENL-------------------------- 94
Query: 538 DRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK---GTV 593
LSGG K RLA + + P LL+LDEPT+ LD S+ E + E K T+
Sbjct: 95 -----KLSGGMKQRLALAQALLHDPE-LLILDEPTSGLDPESRREFWELLRELKKEGKTI 148
Query: 594 ITVSHDRYFVKQIVNRVVEVKGSNL 618
+ SH +++ +RV + +
Sbjct: 149 LLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 3e-30
Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 21/207 (10%)
Query: 424 VVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
V+ ++NL Y D+ + + +E GE ++GPNG GK+TLLK++ GL KP GE+L
Sbjct: 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL 63
Query: 483 LGEHNVLPNYFEQ-------NQAEALDLDKTVLETVAEAA------EDWRIDDIKGLLGR 529
+ ++V+ + Q +L + TV E + A ++ + I+ LL
Sbjct: 64 VLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLEL 123
Query: 530 CNFKADMLDRKVSLLSGGEKARLAF-CKFMVKPSTLLVLDEPTNHLDIPS----KEMLEE 584
+ D ++KV LSGG K RL+ + P LL+LDEPT+ LD S E+L E
Sbjct: 124 FGLE-DKANKKVRTLSGGMKQRLSIALALLHDPE-LLILDEPTSGLDPESRREIWELLRE 181
Query: 585 AISEYKGTVITVSHDRYFVKQIVNRVV 611
E T++ +H +++ +RV+
Sbjct: 182 LAKEGGVTILLSTHILEEAEELCDRVI 208
|
Length = 293 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 115 bits (292), Expect = 5e-30
Identities = 57/208 (27%), Positives = 95/208 (45%), Gaps = 56/208 (26%)
Query: 425 VTIKNLEFGYEDRL--LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ KN+ F Y R + +LTI+ GEK AI+GP+G GKSTLLKL++ L P GE+L
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 483 LGEHNVLPNYFEQNQAEALDLD-----------KTVL--ETVAEAAEDWRIDDIKGLLGR 529
+ ++ LDL+ L T+ E
Sbjct: 61 IDGVDL----------RDLDLESLRKNIAYVPQDPFLFSGTIRE---------------- 94
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY 589
N +LSGG++ R+A + +++ +L+LDE T+ LD ++ ++ EA+
Sbjct: 95 -N-----------ILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRAL 142
Query: 590 KG--TVITVSHDRYFVKQIVNRVVEVKG 615
TVI ++H R + +R++ +
Sbjct: 143 AKGKTVIVIAH-RLSTIRDADRIIVLDD 169
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 7e-30
Identities = 71/212 (33%), Positives = 101/212 (47%), Gaps = 26/212 (12%)
Query: 423 SVVTIKNLEFGYEDRL-LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
++ +NL F Y R +L IE+GE+ +IGPNG GKSTLLKL+ GL KP GEV
Sbjct: 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 482 LLGEHNVLPNYFE-----------QNQAEALDLDKTVLETVAEAAEDWRIDD------IK 524
L+ + QN + L TV + VA E+ + +
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQL-FGPTVEDEVAFGLENLGLPREEIEERVA 120
Query: 525 GLLGRCNFKADMLDRKVSLLSGGEKARLAF-CKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583
L + ++LDR LSGG+K R+A + P +L+LDEPT LD + L
Sbjct: 121 EALELVGLE-ELLDRPPFNLSGGQKQRVAIAGVLAMGPE-ILLLDEPTAGLDPKGRRELL 178
Query: 584 EAISEYK----GTVITVSHDRYFVKQIVNRVV 611
E + + K T+I V+HD V + +RVV
Sbjct: 179 ELLKKLKEEGGKTIIIVTHDLELVLEYADRVV 210
|
Length = 235 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 1e-29
Identities = 54/218 (24%), Positives = 99/218 (45%), Gaps = 31/218 (14%)
Query: 424 VVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
++ +KNL + +A + +I++GE ++G +G GKSTL + I+GL KP G
Sbjct: 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60
Query: 480 EVLLGEHNVLPN-------------YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGL 526
++ ++L Q+ +L+ T+ E +AE K
Sbjct: 61 SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEA 120
Query: 527 LGRCNFK--------ADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIP 577
++L+R LSGG++ R+A + + P LL+ DEPT+ LD+
Sbjct: 121 RKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPK-LLIADEPTSALDVS 179
Query: 578 SK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVV 611
+ ++L++ E T++ ++HD V +I +RV
Sbjct: 180 VQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVA 217
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 1e-29
Identities = 65/198 (32%), Positives = 102/198 (51%), Gaps = 29/198 (14%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ +K L Y + +LT+E GE A++GP+GCGK+TLL+LI GLE+P GE+L+
Sbjct: 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILID 60
Query: 485 EHNV--LPNY-------FEQNQAEALDLDKTVLETVA---------EAAEDWRIDDIKGL 526
+V +P F+ AL TV E +A +A R+ ++ L
Sbjct: 61 GRDVTGVPPERRNIGMVFQDY---ALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLEL 117
Query: 527 LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE----ML 582
+G +L+R LSGG++ R+A + + + +LL+LDEP + LD +E L
Sbjct: 118 VGL----EGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREEL 173
Query: 583 EEAISEYKGTVITVSHDR 600
+E E T I V+HD+
Sbjct: 174 KELQRELGITTIYVTHDQ 191
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 112 bits (284), Expect = 3e-29
Identities = 39/69 (56%), Positives = 55/69 (79%)
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 319
S G +MR++L K+LL++P+LLLLDEPTNHLDL++IE LE L + ++++SHDR FL
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFL 130
Query: 320 DQLCTKIVE 328
DQ+ TKI+E
Sbjct: 131 DQVATKIIE 139
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 3e-28
Identities = 68/233 (29%), Positives = 112/233 (48%), Gaps = 39/233 (16%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+K +++K+Y VL D++ VKKGE G +G NGAGKTT ++II G +PDSG
Sbjct: 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSG----- 55
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
+I F + ++ ++ R + A E L +A +++ L+ RL
Sbjct: 56 ----EITFDGKSYQKNIEALRR---IGALIEAPGFYPNL--------TARENLRLLARL- 99
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
L ++ +++ +G D + V FS G + R+ + LL +
Sbjct: 100 --------------LGIRKKRIDEVLDVVGL-KDSAKKKVKGFSLGMKQRLGIALALLGN 144
Query: 278 PDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCTKIV 327
PDLL+LDEPTN LD D I+ L L Q + ++I SH + + ++ +I
Sbjct: 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIG 197
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 6e-28
Identities = 57/199 (28%), Positives = 95/199 (47%), Gaps = 15/199 (7%)
Query: 426 TIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
I+N+ F Y+ + + +L + GE A+ G NG GK+TL K++ GL K G +LL
Sbjct: 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLN 60
Query: 485 EHNVLP-------NYFEQNQAEALDLDKTVLETVAEAAEDW--RIDDIKGLLGRCNFKAD 535
+ Y Q+ L D +V E + ++ + + +L +
Sbjct: 61 GKPIKAKERRKSIGYVMQDVDYQLFTD-SVREELLLGLKELDAGNEQAETVLKDLDL-YA 118
Query: 536 MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---T 592
+ +R LSGG+K RLA ++ LL+ DEPT+ LD + E + E I E
Sbjct: 119 LKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKA 178
Query: 593 VITVSHDRYFVKQIVNRVV 611
VI ++HD F+ ++ +RV+
Sbjct: 179 VIVITHDYEFLAKVCDRVL 197
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 1e-27
Identities = 57/218 (26%), Positives = 105/218 (48%), Gaps = 32/218 (14%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ +N+ F Y +D + +L I GEK AI+G +G GKSTLLKL++GL KP+ G +L
Sbjct: 472 IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRIL 531
Query: 483 LGEHNVLPNYFEQNQ---------AEALDLDKTVLETVAEAAEDWRIDDIKGLL---GRC 530
L ++ N + + ++ E +A + ++I G
Sbjct: 532 LDGVDL--NDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAH 589
Query: 531 NFKADM---LDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583
F ++ D V + LSGG++ RLA + ++ +L+LDE T+ LD ++ ++
Sbjct: 590 EFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIIL 649
Query: 584 EAISEYKG--TVITVSHDRYFVK---QIV----NRVVE 612
+ + + TVI ++H ++ +I+ ++VE
Sbjct: 650 QNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVE 687
|
Length = 709 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 2e-27
Identities = 62/209 (29%), Positives = 93/209 (44%), Gaps = 23/209 (11%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++ L + R + +L + RGE AIIGP+G GKSTLL+LI+GL +P GEVL+
Sbjct: 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLID 60
Query: 485 EHNVLPNYFEQNQAE-----------ALDLDKTVLETVA------EAAEDWRIDDIKGL- 526
++ + AL TV E VA + I +I
Sbjct: 61 GEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEK 120
Query: 527 LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI 586
L + D + LSGG K R+A + + LL+ DEPT LD + ++++ I
Sbjct: 121 LEAVGLRGA-EDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLI 179
Query: 587 S----EYKGTVITVSHDRYFVKQIVNRVV 611
E T I V+HD I +R+
Sbjct: 180 RSLKKELGLTSIMVTHDLDTAFAIADRIA 208
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 4e-27
Identities = 83/253 (32%), Positives = 133/253 (52%), Gaps = 52/253 (20%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++ EN+SKS+ ++ D+++ + G VG++G NGAGK+T ++I GQE+PDSG IK
Sbjct: 325 IEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGT-IKI 383
Query: 158 KSNMKIAFLSQEFEVSM--SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
+K+A++ Q + ++ ++TV EE I+G L+ ++ V + ++ R
Sbjct: 384 GETVKLAYVDQSRD-ALDPNKTVWEE----------ISGGLDIIK------VGNREIPSR 426
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
A V + F D + V S G + R+ L K L
Sbjct: 427 ---------------------AYVGRF----NFKGGDQQKKVGVLSGGERNRLHLAKTLK 461
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVP--MVIISHDRAFLDQLCTKIVETEMGV 333
Q ++LLLDEPTN LD++T+ LE L + P V+ISHDR FLD++ T I+ E G
Sbjct: 462 QGGNVLLLDEPTNDLDVETLRALEEAL--LEFPGCAVVISHDRWFLDRIATHILAFE-GD 518
Query: 334 SRT--YEGNYSQY 344
S+ +EGN+ +Y
Sbjct: 519 SQVEWFEGNFQEY 531
|
Length = 556 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 5e-27
Identities = 68/194 (35%), Positives = 101/194 (52%), Gaps = 20/194 (10%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
+++ I+ + + + NL++E+GE AI+GP+GCGKSTLL+LI GLEKP GEV
Sbjct: 1 MALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 482 LLGEHNVL---PNY---FEQNQAEALDLDKTVLETVA------EAAEDWRIDDIKGLLGR 529
LL V P+ F Q +AL TVL+ VA ++ + K LL
Sbjct: 61 LLDGRPVTGPGPDIGYVF---QEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLEL 117
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI--- 586
A D+ LSGG + R+A + + LL+LDEP LD ++E L++ +
Sbjct: 118 VGL-AGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRL 176
Query: 587 -SEYKGTVITVSHD 599
E + TV+ V+HD
Sbjct: 177 WEETRKTVLLVTHD 190
|
Length = 248 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 6e-27
Identities = 60/243 (24%), Positives = 109/243 (44%), Gaps = 50/243 (20%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+++EN++ SY VL+D++ V+KGE L+G NGAGK+T L+ I G +P SG +
Sbjct: 5 IEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIF 64
Query: 156 -----KAKSNMKIAFLSQEFEV--SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
K + ++I ++ Q+ V S TV++ + + G R+ K + VD
Sbjct: 65 GKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKK---GWFRRLNKKDKEKVD 121
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
L+ + + DR + S G + R+
Sbjct: 122 ------EALERVGMEDLR---------------------------DRQIGELSGGQKQRV 148
Query: 269 SLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCT 324
L + L Q+PDLLLLDEP +D + + L+ L ++ +++++HD +
Sbjct: 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKE-LRQEGKTVLMVTHDLGLVMAYFD 207
Query: 325 KIV 327
+++
Sbjct: 208 RVI 210
|
Length = 254 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 7e-27
Identities = 67/221 (30%), Positives = 110/221 (49%), Gaps = 33/221 (14%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ + +KN+ + + NL IE GE ++GP+GCGKSTLL++I GLE+P GE+L
Sbjct: 2 AELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61
Query: 483 LGEHNV--LP-----------NY-------FEQNQAEALDLDKTVLETVAEAAEDWRIDD 522
+ +V LP NY +N A L L V +A D R+ +
Sbjct: 62 IDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG-----VPKAEIDKRVKE 116
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML 582
+ LLG +L+RK LSGG++ R+A + +V+ + +LDEP ++LD + ++
Sbjct: 117 VAKLLG----LEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLM 172
Query: 583 EEAISE----YKGTVITVSHDRYFVKQIVNRVVEVKGSNLQ 619
I + T I V+HD+ + +R+V + +Q
Sbjct: 173 RSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQ 213
|
Length = 338 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 8e-27
Identities = 73/254 (28%), Positives = 112/254 (44%), Gaps = 74/254 (29%)
Query: 99 KLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-- 154
+L+N+S SY L D++ +KKGE V +VG NG+GK+T LR++ G P SG V
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 155 ----IKAKSNM----KIAFLSQEFEVSMSR-TVREEFMSAF--------KEEMEIAGKLE 197
+ S K+ + Q + TV EE AF +EE+E E
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEV--AFGLENLGLPEEEIE-----E 113
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
RV++ALE V L+ L DR
Sbjct: 114 RVEEALE------------------------LVGLEGLR-----------------DRSP 132
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPMVIIS 313
+ S G + R+++ +L DPD+LLLDEPT LD + +E L+ L + ++I++
Sbjct: 133 FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKK-LKAEGKTIIIVT 191
Query: 314 HDRAFLDQLCTKIV 327
HD L +L +++
Sbjct: 192 HDLDLLLELADRVI 205
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 5e-26
Identities = 66/215 (30%), Positives = 107/215 (49%), Gaps = 32/215 (14%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ ++ + + DR++ + +L + RGE AI+G +G GKSTLL+LI+GL +P GE+L+
Sbjct: 8 LIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILI 67
Query: 484 -GEHNVLPNYFEQNQAEALDLDK---------------TVLETVA----EAAE--DWRID 521
GE + + ++ E ++ K TV E VA E + + I
Sbjct: 68 DGE-----DIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIR 122
Query: 522 DIKGL-LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 580
++ + L + D S LSGG + R+A + + LL LDEPT+ LD S
Sbjct: 123 ELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAG 182
Query: 581 MLEEAISEYK----GTVITVSHDRYFVKQIVNRVV 611
+++E I E TVI V+HD + I +RV
Sbjct: 183 VIDELIRELNDALGLTVIMVTHDLDSLLTIADRVA 217
|
Length = 263 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 9e-26
Identities = 133/565 (23%), Positives = 247/565 (43%), Gaps = 119/565 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVI 155
++++N++K + G VLK++++ +++GE +G++G +GAGK+ + ++ G + EP SG +I
Sbjct: 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60
Query: 156 KAKSNM-KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMG 214
+ K ++ + +V V + EE++ +++++ + + M
Sbjct: 61 YHVALCEKCGYVERPSKVGEPCPVCGGTLE--PEEVDFWNLSDKLRRRIRKRIAIM---- 114
Query: 215 RLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG-DRLVA--------------- 258
LQR DT+ V + + E+G+ + R V
Sbjct: 115 --------LQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIA 166
Query: 259 -SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEW----LEGYLGKQDVPMVIIS 313
S G + R+ L + L ++P L L DEPT LD T + LE + + MV+ S
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226
Query: 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLI 373
H ++ L K + E G + EG + V A ++E + +++ E+E + +I
Sbjct: 227 HWPEVIEDLSDKAIWLENGEIKE-EGTPDEVV---AVFMEG--VSEVEKECEVEVGEPII 280
Query: 374 NRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFG 433
K+ + ++ + + +RG V + N+
Sbjct: 281 -----------------KVRNV----------SKRYISV---DRG----VVKAVDNVSL- 305
Query: 434 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE--VLLGEHNV--- 488
++ GE I+G +G GK+TL K+I G+ +P GE V +G+ V
Sbjct: 306 ------------EVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMT 353
Query: 489 LPNYFEQNQAE----------ALDLDKTVLETVAEAA------EDWRIDDIKGL--LGRC 530
P + +A+ L +TVL+ + EA E R+ + L +G
Sbjct: 354 KPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFD 413
Query: 531 NFKA-DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI--- 586
KA ++LD+ LS GE+ R+A + ++K +++LDEPT +D +K + +I
Sbjct: 414 EEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKA 473
Query: 587 -SEYKGTVITVSHDRYFVKQIVNRV 610
E + T I VSHD FV + +R
Sbjct: 474 REEMEQTFIIVSHDMDFVLDVCDRA 498
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 1e-25
Identities = 58/202 (28%), Positives = 90/202 (44%), Gaps = 45/202 (22%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ +KN+ Y + + N +L IE GE A++GP+G GKSTLL+ I GLE+P G +L+
Sbjct: 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILID 60
Query: 485 -----EHNVLPNYFEQN-----QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA 534
+ + Q AL TVLE +A
Sbjct: 61 GEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG-------------------- 100
Query: 535 DMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG-- 591
LSGG++ R+A + + P LL LDEPT+ LD ++ + + +
Sbjct: 101 ---------LSGGQQQRVALARALAMDPDVLL-LDEPTSALDPITRREVRALLKSLQAQL 150
Query: 592 --TVITVSHDRYFVKQIVNRVV 611
TV+ V+HD ++ +RVV
Sbjct: 151 GITVVLVTHDLDEAARLADRVV 172
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-25
Identities = 65/252 (25%), Positives = 109/252 (43%), Gaps = 66/252 (26%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
+++EN+S Y G +L D+++ + KGE G++G NG+GK+T L+ +AG +P SG V
Sbjct: 3 LEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLD 62
Query: 155 ---IKAKSNM----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
I + S K+A++ Q TV E V
Sbjct: 63 GKDIASLSPKELAKKLAYVPQSPSAPFGLTVYE-------------------------LV 97
Query: 208 DDMDLMGRL--LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
L+GR L F ++ + V + + LG DR V S G +
Sbjct: 98 ----LLGRYPHLGLFGRPSKEDE--------EIVEEALELLG-LEHLADRPVDELSGGER 144
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAF 318
R+ + + L Q+ +LLLDEPT+HLD L+ + L ++ + +V++ HD
Sbjct: 145 QRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN---REKGLTVVMVLHD--- 198
Query: 319 LDQ---LCTKIV 327
L+ ++
Sbjct: 199 LNLAARYADHLI 210
|
Length = 258 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 2e-25
Identities = 63/240 (26%), Positives = 112/240 (46%), Gaps = 48/240 (20%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI--- 155
++E+++ SY G VL+DV++EVK GE + +VG NGAGK+T L+ I G +P SG++
Sbjct: 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60
Query: 156 --KAKSNMKIAFLSQEFEVSMSR--TVREEFMSAFKEEMEIAGKLERVQKAL-ESAVDDM 210
K +I ++ Q + +VR+ + + +L + KA + A++ +
Sbjct: 61 KPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERV 120
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
L +L R + L S G Q R+ L
Sbjct: 121 GL-------SELADR-----QIGEL-------------------------SGGQQQRVLL 143
Query: 271 GKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIV 327
+ L+QDPDLLLLDEP +D T E + L + + + +++++HD + + +++
Sbjct: 144 ARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVL 203
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 2e-25
Identities = 56/181 (30%), Positives = 79/181 (43%), Gaps = 27/181 (14%)
Query: 436 DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-LPNYFE 494
R+LF+ + T+ GE + GPNG GK+TLL+LI GL P G + L ++ P+ E
Sbjct: 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAE 73
Query: 495 QNQ----AEALDLDKTVLETVAEAAEDWRIDDIKGLLGR---------CNFK-ADMLDRK 540
A+ K L TVAE E W LG A +
Sbjct: 74 ACHYLGHRNAM---KPAL-TVAENLEFWA-----AFLGGEELDIAAALEAVGLAPLAHLP 124
Query: 541 VSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK---GTVITVS 597
LS G+K R+A + +V + +LDEPT LD + + E I + G VI +
Sbjct: 125 FGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAAT 184
Query: 598 H 598
H
Sbjct: 185 H 185
|
Length = 207 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 2e-25
Identities = 58/234 (24%), Positives = 108/234 (46%), Gaps = 27/234 (11%)
Query: 419 RSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477
++++NL F Y D + + NLTI+ G+ TA++G +G GKSTLL L++G P
Sbjct: 315 NEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT 374
Query: 478 GGEVLLGEHNVL-----------------PNYFEQNQAEALDLDKTVL--ETVAEAAEDW 518
GE+ + ++ P F E + L + E + A +
Sbjct: 375 QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQA 434
Query: 519 RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 578
+ + + ++ + LSGG+ RLA + ++ P++LL+LDEPT HLD +
Sbjct: 435 GLLEFVPKPDGLDT---VIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAET 491
Query: 579 KEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630
++++ +A+ E TV+ ++H +R+V + L G + ++
Sbjct: 492 EQIILQALQELAKQKTVLVITHRLEDAAD-ADRIVVLDNGRL-VEQGTHEELSE 543
|
Length = 559 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 3e-25
Identities = 63/201 (31%), Positives = 94/201 (46%), Gaps = 32/201 (15%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEV 481
+++L Y D+ +L I +GE TA+IGP+GCGKSTLL+L+ L P GEV
Sbjct: 3 LRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEV 62
Query: 482 LLGEHNVLPNYFEQNQAEALD------------LDKTVLETVAEAAEDWRIDDIKGL--- 526
LL ++ Y L ++ + VA I + L
Sbjct: 63 LLDGKDI---YDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDER 119
Query: 527 ----LGRCNFKADMLDRKVSL-LSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIPSKE 580
L + ++ DR +L LSGG++ RL + +P LL LDEPT+ LD S
Sbjct: 120 VEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLL-LDEPTSALDPISTA 178
Query: 581 MLEEAISEYKG--TVITVSHD 599
+EE I+E K T++ V+H+
Sbjct: 179 KIEELIAELKKEYTIVIVTHN 199
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 4e-25
Identities = 64/208 (30%), Positives = 108/208 (51%), Gaps = 23/208 (11%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE- 485
+KN+ + D+++ + NLTIE+G+ AIIG +G GKSTLL +I LEK G+V L
Sbjct: 1 LKNISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQ 60
Query: 486 -----HNVLPNYFEQN------QAEALDLDKTVLETVAEAAEDWRIDD------IKGLLG 528
++ + F + Q AL ++TV E + + ++ K L
Sbjct: 61 ETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALE 120
Query: 529 RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE 588
+ L +K+ LSGGE+ R+A + ++KP L++ DEPT LD +++ + + + E
Sbjct: 121 KVGLNLK-LKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLE 179
Query: 589 YKG---TVITVSHDRYFVKQIVNRVVEV 613
T+I V+HD V + +RV+E+
Sbjct: 180 LNDEGKTIIIVTHDPE-VAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 5e-25
Identities = 64/214 (29%), Positives = 99/214 (46%), Gaps = 31/214 (14%)
Query: 425 VTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
++++NL Y A +L IERGE I+G +G GKSTL +L+ GLEKP G
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 481 VLLGEHNVLPNYFE-----------QNQAEALDLDKTVLETVAEAAEDWRIDDIKG---- 525
+LL + P Q+ +L+ +TV ++E R +
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEP---LRPHGLSKSQQR 120
Query: 526 ---LLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM- 581
LL + LDR+ LSGG++ R+A + ++ LL+LDEPT+ LD S +
Sbjct: 121 IAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALD-VSVQAQ 179
Query: 582 ----LEEAISEYKGTVITVSHDRYFVKQIVNRVV 611
L E E T + +SHD V+ + +R+
Sbjct: 180 ILNLLLELKKERGLTYLFISHDLALVEHMCDRIA 213
|
Length = 252 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 8e-25
Identities = 69/255 (27%), Positives = 112/255 (43%), Gaps = 67/255 (26%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++L+N+SK+Y G V LK V+ ++KGE V +VG +G+GK+T L I+ G + P SG
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 154 VIKAKSNM--------------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL--E 197
V +++ I F+ Q F + T E + +AG E
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELP----LLLAGVPKKE 116
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
R ++A E LL+ L R L+ S+L
Sbjct: 117 RRERAEE-----------LLERVGLGDR---------LNHYPSEL--------------- 141
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIIS 313
S G Q R+++ + L DP ++L DEPT +LD +T +E L + +V+++
Sbjct: 142 ---SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVT 198
Query: 314 HDRAFLDQLCTKIVE 328
HD L + +I+E
Sbjct: 199 HDP-ELAEYADRIIE 212
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 1e-24
Identities = 71/247 (28%), Positives = 116/247 (46%), Gaps = 54/247 (21%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
S+++I + D L + A L IE E+ ++G NG GKSTL+K++ GEVL
Sbjct: 2 SLISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKIL-------NGEVL 54
Query: 483 LG------EHNVLPNYFEQN-------------------QAEAL------------DLDK 505
L E +++ +Q+ QAE L D +
Sbjct: 55 LDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSE 114
Query: 506 TVLETVAEAAED------WRIDD-IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558
L +A+ E W++++ I +L + D +S LSGG + A + +
Sbjct: 115 KNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDA---ALSSLSGGWLRKAALGRAL 171
Query: 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNL 618
V +L+LDEPTNHLDI + E LE + ++G++I +SHDR F++ + R+V++ L
Sbjct: 172 VSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKL 231
Query: 619 QDYAGDY 625
Y G+Y
Sbjct: 232 VSYPGNY 238
|
Length = 635 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 2e-24
Identities = 61/204 (29%), Positives = 103/204 (50%), Gaps = 30/204 (14%)
Query: 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
+ + I+N+ + D + +L I++GE ++GP+GCGK+TLL++I G E+P G
Sbjct: 1 MPKPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 480 EVLLGEHNV--LPNY-------FEQNQAEALDLDKTVLETVA----------EAAEDWRI 520
E+LL ++ +P F Q+ AL TV E VA +A R+
Sbjct: 61 EILLDGEDITDVPPEKRPIGMVF---QSYALFPHMTVEENVAFGLKVRKKLKKAEIKARV 117
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 580
++ L+G DRK LSGG++ R+A + +V +L+LDEP + LD +E
Sbjct: 118 EEALELVG----LEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLRE 173
Query: 581 MLEEAISEYKG----TVITVSHDR 600
+ + + E + T + V+HD+
Sbjct: 174 QMRKELKELQRELGITFVYVTHDQ 197
|
Length = 352 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 3e-24
Identities = 62/232 (26%), Positives = 98/232 (42%), Gaps = 52/232 (22%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++L+ +SK+Y V L D++ V+ GE + L+G +G GKTT LR+IAG E PDSG ++
Sbjct: 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILID 60
Query: 158 KSNM--------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
++ I + Q++ + TV E AF ++ K E + E
Sbjct: 61 GRDVTGVPPERRNIGMVFQDYALFPHLTVAENI--AFGLKLRGVPKAEIRARVRELL--- 115
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
L+ LL R S G Q R++
Sbjct: 116 -----ELVGLEGLLNRY------------------------------PHELSGGQQQRVA 140
Query: 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRA 317
L + L ++P LLLLDEP + LD E L L + + + ++HD+
Sbjct: 141 LARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE 192
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 99.5 bits (249), Expect = 1e-23
Identities = 62/223 (27%), Positives = 104/223 (46%), Gaps = 34/223 (15%)
Query: 425 VTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
+ +KNL Y +A +L+IE+GE AI+GP+G GKSTLL ++ GL++P GE
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 481 VLLGEHNVLPNYFEQNQAEAL---------------DLDKTVLETVAEAAE------DWR 519
V + ++ E+ A DL T LE V R
Sbjct: 61 VRVDGTDIS-KLSEKELAAFRRRHIGFVFQSFNLLPDL--TALENVELPLLLAGVPKKER 117
Query: 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK 579
+ + LL R D L+ S LSGG++ R+A + + +++ DEPT +LD +
Sbjct: 118 RERAEELLERVGLG-DRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETG 176
Query: 580 EMLEEAI----SEYKGTVITVSHDRYFVKQIVNRVVEVKGSNL 618
+ + E + E T++ V+HD + +R++E++ +
Sbjct: 177 KEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 1e-23
Identities = 56/194 (28%), Positives = 86/194 (44%), Gaps = 39/194 (20%)
Query: 427 IKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
++N+ F Y + + +IE GE AIIGP+G GKSTL +LI+GL +P G V L
Sbjct: 3 VENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLD 62
Query: 485 E---HNVLPNYFEQNQAEALDLDKTVLE-TVAEAAEDWRIDDIKGLLGRCNFKADMLDRK 540
PN + L D + ++AE
Sbjct: 63 GADISQWDPNELGDHVG-YLPQDDELFSGSIAEN-------------------------- 95
Query: 541 VSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK---GTVITVS 597
+LSGG++ RL + + +LVLDEP +HLD+ + L +AI+ K T I ++
Sbjct: 96 --ILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIA 153
Query: 598 HDRYFVKQIVNRVV 611
H R +R++
Sbjct: 154 H-RPETLASADRIL 166
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-23
Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 24/200 (12%)
Query: 423 SVVTIKNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
+ + Y R + T+ GE+ A++GP+G GKSTLL L++G P G +
Sbjct: 320 PSLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI 379
Query: 482 LLGEHNVLPNYFEQN---------QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRC-- 530
+ L + + Q L T+ E + A D +I+ L R
Sbjct: 380 AVNG-VPLADADADSWRDQIAWVPQHPFL-FAGTIAENIRLARPDASDAEIREALERAGL 437
Query: 531 -NFKAD---MLDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML 582
F A LD + + LSGG+ RLA + ++ + LL+LDEPT HLD ++ +
Sbjct: 438 DEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEV 497
Query: 583 EEAISEYKG--TVITVSHDR 600
EA+ TV+ V+H
Sbjct: 498 LEALRALAQGRTVLLVTHRL 517
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 99.8 bits (250), Expect = 1e-23
Identities = 67/241 (27%), Positives = 109/241 (45%), Gaps = 40/241 (16%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
++ ++K + G+ L DV++ V+ GE GL+G NGAGKTT +I+G P SG+V
Sbjct: 2 EVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDG 61
Query: 155 --IKAKSNMKIAFLSQEFEVSMSRTVREEF--MSAFKEEMEIAGKLERVQKALESAVDDM 210
I +IA L + RT F F E+ + LE V A ++
Sbjct: 62 EDITGLPPHEIARL------GIGRT----FQIPRLF-PELTV---LENVMVAAQARTGSG 107
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
L+ R E + +A+ + L+ + L AD DR S G Q R+ +
Sbjct: 108 LLLARARREEREARERAEEL-LERV---------GL---ADLADRPAGELSYGQQRRLEI 154
Query: 271 GKILLQDPDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKI 326
+ L DP LLLLDEP L+ + E + L ++ + ++++ HD + L ++
Sbjct: 155 ARALATDPKLLLLDEPAAGLNPEETEELAELIRE-LRERGITVLLVEHDMDVVMSLADRV 213
Query: 327 V 327
Sbjct: 214 T 214
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 1e-23
Identities = 66/216 (30%), Positives = 109/216 (50%), Gaps = 28/216 (12%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
++NL +++ L N +L +ERG+ I+GP G GKS LL+ I G KP G++LL
Sbjct: 3 VENLSKDWKEFKLKN-VSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGK 61
Query: 487 NV--LP------NYFEQNQAEALDLDKTVLETVA---------EAAEDWRIDDIKGLLGR 529
++ LP +Y QN AL TV + +A + + ++ +I +LG
Sbjct: 62 DITNLPPEKRDISYVPQNY--ALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLG- 118
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE----MLEEA 585
+L+RK LSGGE+ R+A + +V +L+LDEP + LD+ +KE L++
Sbjct: 119 ---IDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKI 175
Query: 586 ISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDY 621
E+ TV+ V+HD + ++V + L
Sbjct: 176 RKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQV 211
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 99.2 bits (248), Expect = 1e-23
Identities = 69/220 (31%), Positives = 105/220 (47%), Gaps = 46/220 (20%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ +N+ F Y ++ + +LTI GEK AIIG G GKSTLLKL+ GL KP G VL
Sbjct: 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62
Query: 483 LGEHNVLPNYFEQNQAEALDLDKTV-----------------LETVAEAAEDWRIDDIKG 525
L ++ Q + DL + + + A A+D RI
Sbjct: 63 LDGTDI-------RQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAE 115
Query: 526 LLGRCNFKADM---LDRKVS----LLSGGEK-----ARLAFCKFMVKPSTLLVLDEPTNH 573
L G +F LD ++ LSGG++ AR + P LL LDEPT+
Sbjct: 116 LAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARA----LLNDPPILL-LDEPTSA 170
Query: 574 LDIPSKEMLEEAISEYKG--TVITVSHDRYFVKQIVNRVV 611
+D+ S+E L+E + + G T+I ++H R + +V+R++
Sbjct: 171 MDMNSEERLKERLRQLLGDKTLIIITH-RPSLLDLVDRII 209
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 98.0 bits (245), Expect = 2e-23
Identities = 57/205 (27%), Positives = 86/205 (41%), Gaps = 54/205 (26%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
++LEN++K Y L V+ + G GL+G NGAGKTT +RI+A P SG +
Sbjct: 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRID 59
Query: 155 -IKAKSNM-----KIAFLSQEFEVSMSRTVRE--EFMSAFKEEMEIAGKLERVQKALESA 206
+I +L QEF V + TVRE ++++ K + RV + LE
Sbjct: 60 GQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK-GIPSKEVKARVDEVLE-- 116
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
VNL D + + S S G +
Sbjct: 117 ----------------------LVNL-----------------GDRAKKKIGSLSGGMRR 137
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD 291
R+ + + L+ DP +L++DEPT LD
Sbjct: 138 RVGIAQALVGDPSILIVDEPTAGLD 162
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 96.7 bits (242), Expect = 3e-23
Identities = 63/235 (26%), Positives = 103/235 (43%), Gaps = 72/235 (30%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
++EN+S Y G TVL D++ ++ GE VG++G NGAGK+T L+ +AG +P SG ++
Sbjct: 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG 60
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
++ S+S E+A K+ V +ALE LL
Sbjct: 61 KDLA----------SLSPK-------------ELARKIAYVPQALE-----------LLG 86
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
L R + L S G + R+ L + L Q+P
Sbjct: 87 LAHLADR-----PFNEL-------------------------SGGERQRVLLARALAQEP 116
Query: 279 DLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPMVIISHD--RAFLDQLCTKIV 327
+LLLDEPT+HLD+ + +E L ++ +V++ HD A + +++
Sbjct: 117 PILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA--RYADRVI 169
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 6e-23
Identities = 70/233 (30%), Positives = 105/233 (45%), Gaps = 32/233 (13%)
Query: 392 LERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTI--KNLEFGYED-RLLFNRANLTIE 448
ER+ E P P G G T+ ++L GY + + +L +
Sbjct: 304 AERIVEVLDAAGPVAEGS----APAAGAVGLGKPTLELRDLSAGYPGAPPVLDGVSLDLP 359
Query: 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL----------GEHNVLPNYFEQNQA 498
GE+ AI+GP+G GKSTLL + GL P GEV L E + Q+
Sbjct: 360 PGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQD-- 417
Query: 499 EALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNF------KADMLDRKV----SLLSGGE 548
A D TV E + A D +++ L R D LD + + LSGGE
Sbjct: 418 -AHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGE 476
Query: 549 KARLAFCKFMVKPSTLLVLDEPTNHLDI-PSKEMLEEAISEYKG-TVITVSHD 599
+ RLA + ++ + +L+LDEPT HLD + E+LE+ ++ G TV+ ++H
Sbjct: 477 RQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 7e-23
Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 35/234 (14%)
Query: 98 VKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
+++ +++KSY ++DV++E ++GE GL+G NGAGKTT LR+IA PDSG V
Sbjct: 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTI 61
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
+ V VR + + E + +L +A +++ RL
Sbjct: 62 DGVDT----------VRDPSFVRRK-IGVLFGERGLYARL--------TARENLKYFARL 102
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
L RK + A++++L L + DR V FS+G + ++++ + L+
Sbjct: 103 NG----LSRK-------EIKARIAELSKRLQL-LEYLDRRVGEFSTGMKQKVAIARALVH 150
Query: 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVII---SHDRAFLDQLCTKIV 327
DP +L+LDEPT+ LD+ T ++ + + SH ++ LC +++
Sbjct: 151 DPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVI 204
|
Length = 245 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 8e-23
Identities = 65/250 (26%), Positives = 102/250 (40%), Gaps = 53/250 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+++ N+ K + L D++ ++K GE V L+G +GAGK+T LRIIAG E PD+G +
Sbjct: 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLN 62
Query: 158 KSNM-----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
+ K+ F+ Q + + TV + K E + E + E
Sbjct: 63 GRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEE-- 120
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
LL V L+ L DR A S G +
Sbjct: 121 ---------LLRL----------VQLEGL-----------------ADRYPAQLSGGQRQ 144
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD---LDTIE-WLEGYLGKQDVPMVIISHDRAFLDQL 322
R++L + L +P +LLLDEP LD + WL + V V ++HD+ +L
Sbjct: 145 RVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALEL 204
Query: 323 CTKIVETEMG 332
++V G
Sbjct: 205 ADRVVVLNQG 214
|
Length = 345 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 9e-23
Identities = 65/247 (26%), Positives = 106/247 (42%), Gaps = 58/247 (23%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ ++L+N+ KS+ VLKDV +++ GE V L+G +G GK+T LR+IAG EEP SG ++
Sbjct: 2 AELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61
Query: 156 --------KAKSNMKIAFLSQEFEV--SMSRTVREEFMSAFKEEMEIAGKLERVQKA-LE 204
IA + Q + + M TV E + KL V KA ++
Sbjct: 62 IDGRDVTDLPPEKRGIAMVFQNYALYPHM--TVY--------ENIAFGLKLRGVPKAEID 111
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
V ++ AK+ L L +R S G
Sbjct: 112 KRVKEV--------------------------AKLLGLEHLL-------NRKPLQLSGGQ 138
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQD----VPMVIISHDRAFLD 320
+ R++L + L++ P + LLDEP ++LD + + K + ++HD+
Sbjct: 139 RQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAM 198
Query: 321 QLCTKIV 327
L +IV
Sbjct: 199 TLADRIV 205
|
Length = 338 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 1e-22
Identities = 65/206 (31%), Positives = 98/206 (47%), Gaps = 33/206 (16%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LPN----YFEQN- 496
+ I +GE + GP+G GKSTLLKLI G E+P G++L+ H++ L + +
Sbjct: 22 SFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQI 81
Query: 497 ----QAEALDLDKTVLETVAEAAE-------DWRID-----DIKGLLGRCNFKADMLDRK 540
Q L D+TV E VA + R D+ GL KA L
Sbjct: 82 GVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKH----KARALP-- 135
Query: 541 VSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP-SKEMLE--EAISEYKGTVITVS 597
S LSGGE+ R+A + +V +L+ DEPT +LD S E++ E I+ TV+ +
Sbjct: 136 -SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMAT 194
Query: 598 HDRYFVKQIVNRVVEVKGSNLQDYAG 623
HD V ++ +RV+ ++ L
Sbjct: 195 HDLELVNRMRHRVLALEDGRLVRDES 220
|
Length = 223 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 96.4 bits (241), Expect = 1e-22
Identities = 46/192 (23%), Positives = 91/192 (47%), Gaps = 18/192 (9%)
Query: 425 VTIKNLE--FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ I+NL + + + +L + +GE ++G NG GK+T LK++ G +P G
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 483 LGEHNVL--PNYFEQN-----QAEALDLDKTVLETVAEAA------EDWRIDDIKGLLGR 529
+ +++ Q+ Q +AL + TV E + A + ++++ LL
Sbjct: 61 INGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRV 120
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY 589
+++ LSGG K +L+ ++ ++L+LDEPT+ LD S+ + + I E
Sbjct: 121 LGLTDKA-NKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEV 179
Query: 590 KG--TVITVSHD 599
+ ++I +H
Sbjct: 180 RKGRSIILTTHS 191
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-22
Identities = 62/242 (25%), Positives = 112/242 (46%), Gaps = 26/242 (10%)
Query: 410 MKIRFP-ERGRSGRSVVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTL 466
++ FP E+ + + ++N+ F Y NLT+ +GEK AI+G +G GKSTL
Sbjct: 321 PEVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTL 380
Query: 467 LKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD--------LDKTVLETVAEAAED- 517
L+L+ G P+ G + L + + EQ E + T+ + + A D
Sbjct: 381 LQLLAGAWDPQQGSITLNGVEI-ASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDA 439
Query: 518 -----WRIDDIKGLLGRCNFKADMLDRKVSL----LSGGEKARLAFCKFMVKPSTLLVLD 568
W GL D L+ + LSGGE+ RLA + ++ + L +LD
Sbjct: 440 SDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLD 499
Query: 569 EPTNHLD-IPSKEMLEEAISEYKG-TVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626
EPT LD I +++L +G T++ V+H ++++ +R++ + + + G +
Sbjct: 500 EPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERM-DRIIVLDNGKIIEE-GTHA 557
Query: 627 QV 628
++
Sbjct: 558 EL 559
|
Length = 573 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 95.6 bits (239), Expect = 2e-22
Identities = 65/210 (30%), Positives = 94/210 (44%), Gaps = 54/210 (25%)
Query: 425 VTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
+ ++N+ Y A +L++E GE A++GP+GCGKSTLL++I GLE+P GE
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 481 VLLG----------------EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIK 524
VL+ + +LP TVL+ VA E +
Sbjct: 61 VLVDGEPVTGPGPDRGYVFQQDALLPW-------------LTVLDNVALGLELQGVPK-A 106
Query: 525 GLLGRCNFKADMLDRKVSL----------LSGGEKARLAFCK-FMVKPSTLLVLDEPTNH 573
R A+ L V L LSGG + R+A + V P LL LDEP +
Sbjct: 107 EARER----AEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLL-LDEPFSA 161
Query: 574 LDIPSKEMLEEAI----SEYKGTVITVSHD 599
LD ++E L+E + E TV+ V+HD
Sbjct: 162 LDALTREQLQEELLDIWRETGKTVLLVTHD 191
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.0 bits (240), Expect = 2e-22
Identities = 69/254 (27%), Positives = 121/254 (47%), Gaps = 61/254 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
++++N+SKS+ VLK ++ V+KGE V ++G +G+GK+T LR + G EEPDSG++
Sbjct: 3 IEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVD 62
Query: 155 ---IKAKSNM-----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
+ K ++ K+ + Q+F + TV E A KL + +A E A
Sbjct: 63 GEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLA----PVKVKKLSK-AEAREKA 117
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
++ LL++ L KA A P A S G Q
Sbjct: 118 LE-------LLEKVGLAD-KADA-------------YP-------------AQLSGGQQQ 143
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAFL 319
R+++ + L DP ++L DEPT+ LD LD ++ L ++ + M+I++H+ F
Sbjct: 144 RVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMK----DLAEEGMTMIIVTHEMGFA 199
Query: 320 DQLCTKIVETEMGV 333
++ +++ + G
Sbjct: 200 REVADRVIFMDQGK 213
|
Length = 240 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 3e-22
Identities = 58/195 (29%), Positives = 98/195 (50%), Gaps = 25/195 (12%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V ++N+ + + + NL I GE ++GP+GCGK+T L++I GLE+P G + +G
Sbjct: 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIG 60
Query: 485 EHNV--LPNYFEQN-----QAEALDLDKTVLETVA---------EAAEDWRIDDIKGLLG 528
+V LP +++ Q AL TV + +A + D R+ ++ LL
Sbjct: 61 GRDVTDLPPK-DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQ 119
Query: 529 RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK-EMLEEAIS 587
+LDRK LSGG++ R+A + +V+ + ++DEP ++LD + +M E
Sbjct: 120 ----IEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKR 175
Query: 588 ---EYKGTVITVSHD 599
T I V+HD
Sbjct: 176 LQQRLGTTTIYVTHD 190
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 4e-22
Identities = 50/178 (28%), Positives = 92/178 (51%), Gaps = 27/178 (15%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++I N+ F Y +++ + +L +++GEK A++G +G GKSTLL+L+ G KP+ GE+
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 483 LGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVS 542
L V DL+K + ++ + + + L F + +
Sbjct: 61 LDGVPV------------SDLEKALSSLIS-------VLNQRPYL----FDTTLRNNLGR 97
Query: 543 LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD-IPSKEMLEEAISEYKG-TVITVSH 598
SGGE+ RLA + +++ + +++LDEPT LD I +++L K T+I ++H
Sbjct: 98 RFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITH 155
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 94.9 bits (237), Expect = 5e-22
Identities = 57/201 (28%), Positives = 88/201 (43%), Gaps = 53/201 (26%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
++ EN+SK Y V+ V+ VK+GE VGL+G NGAGKTT +I G +PDSG +
Sbjct: 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLD 60
Query: 155 --------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL-ERVQKALES 205
+ ++ + I +L QE + TV E ++ +EI G + ++ LE
Sbjct: 61 GQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAV----LEIRGLSKKEREEKLEE 116
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
LL+EF + + K +S S G +
Sbjct: 117 ----------LLEEFHI--------------THLRK-------------SKASSLSGGER 139
Query: 266 MRMSLGKILLQDPDLLLLDEP 286
R+ + + L +P LLLDEP
Sbjct: 140 RRVEIARALATNPKFLLLDEP 160
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 94.5 bits (236), Expect = 6e-22
Identities = 66/258 (25%), Positives = 112/258 (43%), Gaps = 64/258 (24%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++L+N+SK Y V LKDV E++ GE V +VG +G+GK+T L ++ G ++P SG
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 154 VI-----------KAKSNM---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL-ER 198
V+ K + + KI F+ Q F + TV E + IAGK R
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELP----LLIAGKSAGR 117
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
++A E LL+ L R + +
Sbjct: 118 RKRAAEE----------LLEVLGLEDRLL--------------------------KKKPS 141
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISH 314
S G Q R+++ + L+ +P ++L DEPT +LD T +E L ++ +++++H
Sbjct: 142 ELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTH 201
Query: 315 DRAFLDQLCTKIVETEMG 332
D +++E + G
Sbjct: 202 DPELAKY-ADRVIELKDG 218
|
Length = 226 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 7e-22
Identities = 56/198 (28%), Positives = 91/198 (45%), Gaps = 35/198 (17%)
Query: 98 VKLENISKSY----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+ + ++K + K V + V++ VK GE GL+G NGAGKTT LR++AG EPD+G
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61
Query: 154 VIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
V V+E + + + L +A ++++
Sbjct: 62 A----------------TVDGFDVVKEPA--EARRRLGFVSDSTGLYDRL-TARENLEYF 102
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
L + D L A++ +L LG + DR V FS+G + ++++ +
Sbjct: 103 AGL-----------YGLKGDELTARLEELADRLGM-EELLDRRVGGFSTGMRQKVAIARA 150
Query: 274 LLQDPDLLLLDEPTNHLD 291
L+ DP +LLLDEPT LD
Sbjct: 151 LVHDPPVLLLDEPTTGLD 168
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 91.7 bits (229), Expect = 1e-21
Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 9/92 (9%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+++ N+SK Y T L D++ V+KGE GL+G NGAGKTT ++II G +PDSG +
Sbjct: 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVL 60
Query: 156 -------KAKSNMKIAFLSQEFEVSMSRTVRE 180
+ +I +L +E + + TVRE
Sbjct: 61 GKDIKKEPEEVKRRIGYLPEEPSLYENLTVRE 92
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 1e-21
Identities = 65/210 (30%), Positives = 102/210 (48%), Gaps = 33/210 (15%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ + ++ F Y + R +LT+ GE AI+GP+G GKSTLL LI G E P GE+L+
Sbjct: 2 LALDDVRFSYGHLPM--RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILIN 59
Query: 485 --EHNVLPNY-------FEQNQAEALDLDKTVLETVA---------EAAEDWRIDDIKGL 526
+H P F++N L TV + + A + +++
Sbjct: 60 GVDHTASPPAERPVSMLFQENN---LFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQ 116
Query: 527 LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS--KEMLE- 583
+G A L R LSGG++ R+A + +V+ +L+LDEP + LD P+ EML
Sbjct: 117 VGL----AGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALD-PALRAEMLAL 171
Query: 584 --EAISEYKGTVITVSHDRYFVKQIVNRVV 611
+ E K T++ V+H +I +RVV
Sbjct: 172 VSQLCDERKMTLLMVTHHPEDAARIADRVV 201
|
Length = 231 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 2e-21
Identities = 53/203 (26%), Positives = 92/203 (45%), Gaps = 38/203 (18%)
Query: 423 SVVTIKNLEFGYEDRLLFNRA---------NLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473
++ +KNL+ + F + + +I+ GE ++G +GCGKSTL +LI+GL
Sbjct: 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL 62
Query: 474 EKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK 533
E+P GE+ FE L ++ R + + LL +
Sbjct: 63 EEPTSGEI----------LFEGKDITKLSKEE-------------RRERVLELLEKVGLP 99
Query: 534 ADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIPSK----EMLEEAISE 588
+ L R LSGG++ R+ + + P L+V DEP + LD+ + +L++ E
Sbjct: 100 EEFLYRYPHELSGGQRQRIGIARALALNPK-LIVADEPVSALDVSVQAQILNLLKDLQEE 158
Query: 589 YKGTVITVSHDRYFVKQIVNRVV 611
T + +SHD V+ I +R+
Sbjct: 159 LGLTYLFISHDLSVVRYISDRIA 181
|
Length = 268 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 93.7 bits (233), Expect = 2e-21
Identities = 58/188 (30%), Positives = 89/188 (47%), Gaps = 30/188 (15%)
Query: 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP------ 490
RL+ + ++T G T ++GPNG GKSTLL+L+ G +P G V L ++
Sbjct: 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRAR 73
Query: 491 ----NYFEQNQAEALDLDKTVLETVA------------EAAEDWRIDDIKGLLGRCNFKA 534
EQ+ A+ L TV + VA ++ D + D L R +
Sbjct: 74 ARRVALVEQDSDTAVPL--TVRDVVALGRIPHRSLWAGDSPHDAAVVD--RALARTEL-S 128
Query: 535 DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--- 591
+ DR +S LSGGE+ R+ + + + LL+LDEPTNHLD+ ++ + E
Sbjct: 129 HLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGV 188
Query: 592 TVITVSHD 599
TV+ HD
Sbjct: 189 TVVAALHD 196
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 92.5 bits (231), Expect = 2e-21
Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 35/170 (20%)
Query: 426 TIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
++NL GY + ++LF +LT+ GE A++G NG GK+TLLK IMGL PR G +
Sbjct: 2 EVENLNAGYGKSQILFG-VSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFD 60
Query: 485 EHNV---------------LPNYFEQNQAEALDLDKTVLE-------TVAEAAEDWRIDD 522
++ +P + + + TV E A R++
Sbjct: 61 GRDITGLPPHERARAGIGYVP------EGRRIFPELTVEENLLLGAYARRRAKRKARLER 114
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPT 571
+ L R + + LSGGE+ LA + M +P LL+LDEP+
Sbjct: 115 VYELFPRL---KERRKQLAGTLSGGEQQMLAIARALMSRPK-LLLLDEPS 160
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 3e-21
Identities = 64/229 (27%), Positives = 99/229 (43%), Gaps = 53/229 (23%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
+++E +SKS+ GV VL+D+ V+KGE V ++G +G GK+T LR+IAG E+P SG V
Sbjct: 4 LEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLD 63
Query: 155 --IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL--ERVQKALESAVDDM 210
I ++ QE + TV + +E+ GK E ++A E
Sbjct: 64 GRPVTGPGPDIGYVFQEDALLPWLTVLDNVALG----LELRGKSKAEARERAKE------ 113
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
LL+ L A D+ S G + R+++
Sbjct: 114 -----LLELVGL---------------------------AGFEDKYPHQLSGGMRQRVAI 141
Query: 271 GKILLQDPDLLLLDEPTNHLDLDTIE----WLEGYLGKQDVPMVIISHD 315
+ L P LLLLDEP LD T E L + +++++HD
Sbjct: 142 ARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHD 190
|
Length = 248 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 92.5 bits (231), Expect = 3e-21
Identities = 58/201 (28%), Positives = 82/201 (40%), Gaps = 39/201 (19%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LPNY--------- 492
+ ++ GE +IGPNG GK+TL LI G +P G VL ++ LP +
Sbjct: 20 SFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79
Query: 493 -FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA---------------DM 536
F Q +L TVLE V AA+ + R + D+
Sbjct: 80 TF-QIPRLFPEL--TVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADL 136
Query: 537 LDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPT---NHLDIPSKEMLE--EAISEYK 590
DR LS G++ RL + P LL+LDEP N + E+ E + E
Sbjct: 137 ADRPAGELSYGQQRRLEIARALATDPK-LLLLDEPAAGLNPEETE--ELAELIRELRERG 193
Query: 591 GTVITVSHDRYFVKQIVNRVV 611
TV+ V HD V + +RV
Sbjct: 194 ITVLLVEHDMDVVMSLADRVT 214
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 3e-21
Identities = 58/202 (28%), Positives = 93/202 (46%), Gaps = 48/202 (23%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
V+LEN++K + VT L D+ ++ GE V L+G +G GKTT LR+IAG EEP SG +
Sbjct: 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIG 60
Query: 158 KSNMK--------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
++ IA + Q + + TV + AF ++ K E ++ E A
Sbjct: 61 GRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNI--AFGLKLRKVPKDEIDERVREVA--- 115
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
LL LL RK + + S G + R++
Sbjct: 116 -----ELLQIEHLLDRKPKQL------------------------------SGGQRQRVA 140
Query: 270 LGKILLQDPDLLLLDEPTNHLD 291
LG+ ++++P + L+DEP ++LD
Sbjct: 141 LGRAIVREPKVFLMDEPLSNLD 162
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 3e-21
Identities = 55/210 (26%), Positives = 77/210 (36%), Gaps = 52/210 (24%)
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLGE- 485
KN+ + + + + GE AI+GPNG GK+TLL L+ G P G+V LLG
Sbjct: 35 KNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRR 94
Query: 486 ---------------------HN-----------VLPNYFEQNQAEALDLDKTVLETVAE 513
H VL +F DL L
Sbjct: 95 FGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQW 154
Query: 514 AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNH 573
E + DR LS GE+ R+ + +VK LL+LDEP
Sbjct: 155 LLELLGAKHLA-------------DRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQG 201
Query: 574 LDIPSKEML-----EEAISEYKGTVITVSH 598
LD+ ++E L E A S ++ V+H
Sbjct: 202 LDLIAREQLLNRLEELAASPGAPALLFVTH 231
|
Length = 257 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 4e-21
Identities = 55/200 (27%), Positives = 84/200 (42%), Gaps = 38/200 (19%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL- 483
+ +NL +R LF+ + T+ GE I GPNG GK+TLL+++ GL +P GEV
Sbjct: 3 LEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQ 62
Query: 484 GEH-NVLPNYFEQN-----QAEALDLDKTVLE---------------TVAEAAEDWRIDD 522
GE + + Q + + T LE T+ EA
Sbjct: 63 GEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQV---- 118
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML 582
GL G D V LS G++ R+A + + P+ L +LDEP LD +L
Sbjct: 119 --GLAGL-------EDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALL 169
Query: 583 EEAISEY---KGTVITVSHD 599
++ + G V+ +H
Sbjct: 170 TALMAAHAAQGGIVLLTTHQ 189
|
Length = 209 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.5 bits (227), Expect = 6e-21
Identities = 60/207 (28%), Positives = 97/207 (46%), Gaps = 23/207 (11%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
+K + + D + N +L++ GE AI GP+GCGKSTLLK++ L P G +L
Sbjct: 5 ELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEG 64
Query: 486 HNVL---PNYFEQNQAEALDLDKTVLETVAEAAED-----WRI-------DDIKGLLGRC 530
+V P + Q + +TV ED W+I LL R
Sbjct: 65 EDVSTLKPEAYRQQVSYCAQTPALFGDTV----EDNLIFPWQIRNRRPDRAAALDLLARF 120
Query: 531 NFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY- 589
+L + ++ LSGGEK R+A + + +L+LDE T+ LD +K +EE I Y
Sbjct: 121 ALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYV 180
Query: 590 ---KGTVITVSHDRYFVKQIVNRVVEV 613
V+ ++HD+ + ++V+ +
Sbjct: 181 REQNVAVLWITHDKDQAIRHADKVITL 207
|
Length = 223 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 7e-21
Identities = 59/304 (19%), Positives = 114/304 (37%), Gaps = 77/304 (25%)
Query: 63 QSDVESLFSS----------SADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--- 109
E + S+ +A + + G + + N+SK Y
Sbjct: 236 TGPTEEILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKG 295
Query: 110 --------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI------ 155
V + DV++++++GE +GLVG +G+GK+T RI+AG P SG++I
Sbjct: 296 LFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDL 355
Query: 156 --------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ + +++ F ++ TV +
Sbjct: 356 DLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDI-------------------------- 389
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
L L + + A+V++L+ +G + DR S G + R
Sbjct: 390 ----LAEPLRIHGGGSGAERR--------ARVAELLELVGLPPEFLDRYPHELSGGQRQR 437
Query: 268 MSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323
+++ + L +P LL+LDEP + LD + L+ + + + ISHD A + +
Sbjct: 438 VAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIA 497
Query: 324 TKIV 327
++
Sbjct: 498 DRVA 501
|
Length = 539 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 7e-21
Identities = 62/211 (29%), Positives = 103/211 (48%), Gaps = 29/211 (13%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ IKNL + D + +LT+++GE IIGP+G GKSTLL+ I LE+P G +++
Sbjct: 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIID 60
Query: 485 EHNVLPNYFEQN----------QAEALDLDKTVLETVAEA-------AEDWRIDDIKGLL 527
+ + N Q L TVLE + A ++ + LL
Sbjct: 61 GLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELL 120
Query: 528 GRCNFKADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIPSKEMLEE-- 584
+ AD D + LSGG++ R+A + + P +L DEPT+ LD P E++ E
Sbjct: 121 EKVGL-ADKADAYPAQLSGGQQQRVAIARALAMNPKVML-FDEPTSALD-P--ELVGEVL 175
Query: 585 ----AISEYKGTVITVSHDRYFVKQIVNRVV 611
++E T++ V+H+ F +++ +RV+
Sbjct: 176 DVMKDLAEEGMTMVVVTHEMGFAREVADRVI 206
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 8e-21
Identities = 71/244 (29%), Positives = 111/244 (45%), Gaps = 64/244 (26%)
Query: 100 LENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
+ENIS SYK T +L D++ ++ GE + L G NGAGKTT +I+AG + SG++
Sbjct: 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG 61
Query: 155 --IKAKSNMK-IAFLSQE-----FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
IKAK K I ++ Q+ F S VREE + K E+ E+ +
Sbjct: 62 KPIKAKERRKSIGYVMQDVDYQLFTDS----VREELLLGLK---ELDAGNEQAET----- 109
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
+L + DL K +R S S G +
Sbjct: 110 ---------VLKDLDLYALK---------------------------ERHPLSLSGGQKQ 133
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323
R+++ LL DLL+ DEPT+ LD ++ + L L Q +++I+HD FL ++C
Sbjct: 134 RLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVC 193
Query: 324 TKIV 327
+++
Sbjct: 194 DRVL 197
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 91.0 bits (227), Expect = 8e-21
Identities = 57/239 (23%), Positives = 104/239 (43%), Gaps = 45/239 (18%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+++ N++K+YK + D++ V KGE GL+G NGAGKTT L+++ G+ P SG
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
++ + S +F + F +E+ + + + R
Sbjct: 61 INGYSI----RTDRKAARQSLGYCPQFDALF-DEL--------------TVREHLRFYAR 101
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
L + + + +V L+ LG T D ++ + S G + ++SL L+
Sbjct: 102 L-----------KGLPKSEIKEEVELLLRVLGLT-DKANKRARTLSGGMKRKLSLAIALI 149
Query: 276 QDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
P +LLLDEPT+ LD D I + ++ +++ +H + LC +I
Sbjct: 150 GGPSVLLLDEPTSGLDPASRRAIWDLILEV-----RKGRSIILTTHSMDEAEALCDRIA 203
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 9e-21
Identities = 57/242 (23%), Positives = 113/242 (46%), Gaps = 44/242 (18%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+ + N+S Y G L +V+ E+++GE +G+VG +G+GK+T R++AG E+P SG+
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 154 VIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
+ + + ++ K ++ V + S+++ +
Sbjct: 64 I----------------------LLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTV 101
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
GR+L E + L ++++L+ ++G DR S G + R+++ +
Sbjct: 102 GRILSE------PLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARA 155
Query: 274 LLQDPDLLLLDEPTNHLDLDT--------IEWLEGYLGKQDVPMVIISHDRAFLDQLCTK 325
L+ +P LL+LDEPT+ LD+ +E + + + ISHD A ++ +C +
Sbjct: 156 LIPEPKLLILDEPTSALDVSVQAQILNLLLELKKER----GLTYLFISHDLALVEHMCDR 211
Query: 326 IV 327
I
Sbjct: 212 IA 213
|
Length = 252 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 90.7 bits (225), Expect = 9e-21
Identities = 61/202 (30%), Positives = 100/202 (49%), Gaps = 29/202 (14%)
Query: 434 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--PN 491
YE L +L + GE AI+GP+G GKSTLL LI G +P G + + + +
Sbjct: 8 YEYEHLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAP 67
Query: 492 Y-------FEQNQAEALDLDKTVLETVA---------EAAEDWRIDDIKGLLGRCNFKAD 535
Y F++N L TV + + A + ++ D +G AD
Sbjct: 68 YQRPVSMLFQENN---LFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVG----IAD 120
Query: 536 MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD-IPSKEML---EEAISEYKG 591
LDR LSGG++ R+A + +V+P+ +L+LDEP + LD + +EML ++ SE +
Sbjct: 121 YLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQR 180
Query: 592 TVITVSHDRYFVKQIVNRVVEV 613
T++ V+H + I +++ V
Sbjct: 181 TLLMVTHHLSDARAIASQIAVV 202
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 87.9 bits (219), Expect = 1e-20
Identities = 33/71 (46%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++LEN+SK+Y G +LKD++ + G+++GLVG NGAGK+T L++IAG+ EPD G +
Sbjct: 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGI-VTW 59
Query: 158 KSNMKIAFLSQ 168
S +KI + Q
Sbjct: 60 GSTVKIGYFEQ 70
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 90.6 bits (226), Expect = 1e-20
Identities = 60/256 (23%), Positives = 110/256 (42%), Gaps = 66/256 (25%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++++N+S S+ V L DV++ +KKGE +GLVG +G+GK+T R I G +P SG+
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 154 VI---KAKSNM----------KIAFLSQEFEVSMS-----RTVREEFMSAFKEEMEIAGK 195
+I K + +I + Q+ MS T+ E E + I GK
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQD---PMSSLNPRMTIGE----QIAEPLRIHGK 114
Query: 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255
L + + E V L+ +G + +R
Sbjct: 115 LSKKEARKE---------------------------------AVLLLLVGVGLPEEVLNR 141
Query: 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVI 311
S G + R+++ + L +P LL+ DEPT+ LD+ ++ L+ + + ++
Sbjct: 142 YPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLF 201
Query: 312 ISHDRAFLDQLCTKIV 327
I+HD + ++ ++
Sbjct: 202 ITHDLGVVAKIADRVA 217
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 1e-20
Identities = 56/200 (28%), Positives = 91/200 (45%), Gaps = 16/200 (8%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ +L Y + + + +L +++GE +GPNG GK+T +K+I+GL KP GE+
Sbjct: 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFD 60
Query: 485 EHNVLPNYFEQNQAEALDLDK-------TVLETVAEAAEDWRIDD--IKGLLGRCNFKAD 535
+ N + AL ++ T E + A I I +L K
Sbjct: 61 GKSYQKNIEALRRIGAL-IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDS 119
Query: 536 MLDRKVSLLSGGEKARLAF-CKFMVKPSTLLVLDEPTNHLD-IPSKEMLE--EAISEYKG 591
+KV S G K RL + P LL+LDEPTN LD KE+ E ++ +
Sbjct: 120 A-KKKVKGFSLGMKQRLGIALALLGNPD-LLILDEPTNGLDPDGIKELRELILSLRDQGI 177
Query: 592 TVITVSHDRYFVKQIVNRVV 611
TV+ SH ++++ +R+
Sbjct: 178 TVLISSHLLSEIQKVADRIG 197
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 1e-20
Identities = 62/194 (31%), Positives = 98/194 (50%), Gaps = 23/194 (11%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++N+ Y + + +L I+ GE ++GP+GCGK+TLL+LI G E P GE+LL
Sbjct: 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLD 60
Query: 485 E---HNVLPNYFEQN---QAEALDLDKTVLETVA---------EAAEDWRIDDIKGLLGR 529
N+ P+ N Q AL TV E +A +A R+ + L+
Sbjct: 61 GKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQL 120
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP-SKEMLEE--AI 586
+ +RK S LSGG++ R+A + +V +L+LDEP LD+ K+M E +
Sbjct: 121 EGYA----NRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRL 176
Query: 587 SEYKG-TVITVSHD 599
+ G T + V+HD
Sbjct: 177 QKELGITFVFVTHD 190
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 2e-20
Identities = 69/238 (28%), Positives = 108/238 (45%), Gaps = 49/238 (20%)
Query: 107 YKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFL 166
LKD+++E+ KGE+VG++G NGAGK+T L++IAG +P SG V K K+A L
Sbjct: 37 VAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV---KVTGKVAPL 93
Query: 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRK 226
E+ F E+ + +++ L G +L L RK
Sbjct: 94 ---IELGAG----------FDPEL--------------TGRENIYLRGLILG----LTRK 122
Query: 227 AQAVNLDTLDAKVSKLM--PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
+D KV +++ ELG D D+ V ++SSG R++ +PD+LLLD
Sbjct: 123 E-------IDEKVDEIIEFAELG---DFIDQPVKTYSSGMYARLAFSVATHVEPDILLLD 172
Query: 285 EPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEG 339
E D E L +++ +V++SHD + Q C + + E G R
Sbjct: 173 EVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGS 230
|
Length = 249 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 2e-20
Identities = 73/253 (28%), Positives = 116/253 (45%), Gaps = 66/253 (26%)
Query: 98 VKLENISKSY-----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
++LEN+SK++ VT L DV+ E+ KGE G++G +GAGK+T LR+I E P SG
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 153 NV------IKAKSNM-------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG--KLE 197
+V + A S KI + Q F + SRTV E +E+AG K E
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFP----LELAGVPKAE 117
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
Q+ E LL+ L +D DR
Sbjct: 118 IKQRVAE-----------LLELVGL---------------------------SDKADRYP 139
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIIS 313
A S G + R+++ + L +P +LL DE T+ LD +T +E L+ + + +V+I+
Sbjct: 140 AQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLIT 199
Query: 314 HDRAFLDQLCTKI 326
H+ + ++C ++
Sbjct: 200 HEMEVVKRICDRV 212
|
Length = 339 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 2e-20
Identities = 67/251 (26%), Positives = 99/251 (39%), Gaps = 47/251 (18%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
++ +SK + G+T + DV+ EV+ GE VGL+G NGAGKTT +I G +P SG V
Sbjct: 6 EVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRG 65
Query: 155 --IKAKSNMKIAFLS-----QEFEVSMSRTVREEFMSA--FKEEMEIAGKLERVQKALES 205
I +IA L Q + TV E + + R +K
Sbjct: 66 RDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEERE 125
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
A + LL+ L + DR + S G Q
Sbjct: 126 A---RERARELLEFVGLGELA---------------------------DRPAGNLSYGQQ 155
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQ 321
R+ + + L P LLLLDEP L+ + E L + + V +++I HD +
Sbjct: 156 RRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMG 215
Query: 322 LCTKIVETEMG 332
L +IV G
Sbjct: 216 LADRIVVLNYG 226
|
Length = 250 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 90.3 bits (224), Expect = 3e-20
Identities = 65/235 (27%), Positives = 105/235 (44%), Gaps = 31/235 (13%)
Query: 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
G++L +S S G ++ V G GL+G NG+GK+T LR++AG PD+G V
Sbjct: 1 GLRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDL 60
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
A ++ +SR R ++ +++ + A L V D+ +GR
Sbjct: 61 AGVDLH----------GLSRRARARRVALVEQDSDTAVPL---------TVRDVVALGR- 100
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
+ R A + A V + + + DR +++ S G + R+ + + L Q
Sbjct: 101 -----IPHRSLWAGDSPHDAAVVDRALARTELS-HLADRDMSTLSGGERQRVHVARALAQ 154
Query: 277 DPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
+P LLLLDEPTNHLD L+T+ + V +V HD C +V
Sbjct: 155 EPKLLLLDEPTNHLDVRAQLETLALVRELAATG-VTVVAALHDLNLAASYCDHVV 208
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|221805 pfam12848, ABC_tran_2, ABC transporter | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 3e-20
Identities = 40/89 (44%), Positives = 59/89 (66%), Gaps = 5/89 (5%)
Query: 327 VETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGAN-SGRA 385
+E E G TY+GNYSQY+ +K +E Q A+EKQQ+EI++ ++ I+R A A+ + +A
Sbjct: 1 LELENGKLTTYKGNYSQYLEQKEERLEQQEKAYEKQQKEIKKLEEFIDRFRAKASKAKQA 60
Query: 386 SSAEKKLERLQEEEQIEKPFQRKQMKIRF 414
S K LE++ E+IEKP K+ KIRF
Sbjct: 61 QSRIKALEKM---ERIEKP-VEKKPKIRF 85
|
This domain is related to pfam00005. Length = 85 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 89.1 bits (222), Expect = 4e-20
Identities = 65/232 (28%), Positives = 102/232 (43%), Gaps = 55/232 (23%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+++ N+SK+Y G VT L+D++ V++GE V LVG +G GK+T LRIIAG E P SG
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 154 VI-----KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
V+ ++ Q+ + TV + A E++ K E ++A E
Sbjct: 61 VLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNV--ALGLELQGVPKAEARERAEE---- 114
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP-ELGFTADDGDRLVASFSSGWQMR 267
LL+ L + P +L S G + R
Sbjct: 115 -------LLELVGL--------------SGFENAYPHQL--------------SGGMRQR 139
Query: 268 MSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHD 315
++L + L DPD+LLLDEP + LD E L + +++++HD
Sbjct: 140 VALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHD 191
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 4e-20
Identities = 64/222 (28%), Positives = 105/222 (47%), Gaps = 44/222 (19%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ IKNL + D+ + +L++E+GE IIGP+G GKSTLL+ + GLE+P G +
Sbjct: 1 MMIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60
Query: 483 LGEHNVLPNYFEQNQAEALDLD-------------KTVLETVAEA-----------AEDW 518
+ +V L TVLE V A A +
Sbjct: 61 VDGEDVGDK----KDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREK 116
Query: 519 RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIP 577
++ LL + AD D + LSGG++ R+A + + P +L DEPT+ LD P
Sbjct: 117 ALE----LLEKVGL-ADKADAYPAQLSGGQQQRVAIARALAMDPKVML-FDEPTSALD-P 169
Query: 578 SKEMLEE------AISEYKGTVITVSHDRYFVKQIVNRVVEV 613
E++ E ++E T+I V+H+ F +++ +RV+ +
Sbjct: 170 --ELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFM 209
|
Length = 240 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.7 bits (234), Expect = 4e-20
Identities = 68/241 (28%), Positives = 105/241 (43%), Gaps = 44/241 (18%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++L ISKS+ GV L V+ V+ GE L+G NGAGK+T ++I++G PDSG
Sbjct: 9 LELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSG----- 63
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD-----L 212
+I + S R + AG + V + L S V ++
Sbjct: 64 ----EILIDGKPVAFSSPR------------DALAAG-IATVHQEL-SLVPNLSVAENIF 105
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM-SLG 271
+GR R+ ++ + + +L+ LG D D LV S Q +M +
Sbjct: 106 LGR------EPTRRFGLIDRKAMRRRARELLARLGLD-IDPDTLVGDLSIA-QRQMVEIA 157
Query: 272 KILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISH--DRAFLDQLCTKI 326
+ L D +L+LDEPT L + E L L Q V ++ ISH D F ++ +I
Sbjct: 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVF--EIADRI 215
Query: 327 V 327
Sbjct: 216 T 216
|
Length = 500 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 4e-20
Identities = 65/209 (31%), Positives = 99/209 (47%), Gaps = 39/209 (18%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ +NL GY + + N +L++ G+ TA+IGPNGCGKSTLLK L P+ G V LG
Sbjct: 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLG 62
Query: 485 EHNVLPNYFEQNQAEALDL---------DKTVLETVAEAAEDWRIDDIKGLLGRCNFK-- 533
+ + + A L L TV E VA W L GR + +
Sbjct: 63 D-KPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWL-----SLWGRLSAEDN 116
Query: 534 ------------ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK-- 579
+ DR+++ LSGG++ R + + + +++LDEPT +LDI +
Sbjct: 117 ARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVE 176
Query: 580 --EMLEEAISEYKGTVITVSHD-----RY 601
++ E ++ K TV+TV HD RY
Sbjct: 177 LMRLMRELNTQGK-TVVTVLHDLNQASRY 204
|
Length = 255 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.8 bits (224), Expect = 4e-20
Identities = 61/206 (29%), Positives = 85/206 (41%), Gaps = 37/206 (17%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ +NL R L + +LT+ GE AI+GPNG GKSTLL+ + G P GEV L
Sbjct: 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRL 61
Query: 484 GEHN--------------VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKG--LL 527
VLP Q +L TV E VA + + L+
Sbjct: 62 NGRPLADWSPAELARRRAVLP------QHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALV 115
Query: 528 GRCNFKADML---DRKVSLLSGGEKARLAFCKFMV-------KPSTLLVLDEPTNHLDIP 577
+ D+ R LSGGE+ R+ + + P LL LDEPT+ LD+
Sbjct: 116 AAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLL-LDEPTSALDLA 174
Query: 578 SK----EMLEEAISEYKGTVITVSHD 599
+ + + E VI V HD
Sbjct: 175 HQHHVLRLARQLAHERGLAVIVVLHD 200
|
Length = 258 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 5e-20
Identities = 61/223 (27%), Positives = 96/223 (43%), Gaps = 33/223 (14%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
L+N+S G +L D++W+V GE +VG NGAGKTT L ++ G+ P SG+V
Sbjct: 34 LKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVT---- 89
Query: 160 NMKIAFLSQEF-EVSMSRTVREE--FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
L + F + +R+ +S E+ + + + L G
Sbjct: 90 -----LLGRRFGKGETIFELRKRIGLVS-----SELHERFRVRETVRDVV-----LSG-F 133
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
+ Q A +L L+ LG DR S S G Q R+ + + L++
Sbjct: 134 FASIGIYQEDLTAEDLA----AAQWLLELLGAKHLA-DRPFGSLSQGEQRRVLIARALVK 188
Query: 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVP-----MVIISH 314
DP+LL+LDEP LDL E L L + ++ ++H
Sbjct: 189 DPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTH 231
|
Length = 257 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 5e-20
Identities = 68/247 (27%), Positives = 106/247 (42%), Gaps = 52/247 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+++ NISK + L DV EV G V L+G +G+GK+T LRIIAG E+PDSG +
Sbjct: 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLN 60
Query: 156 -KAKSNM-----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
+ + + KI F+ Q + + TVR+ IA LE
Sbjct: 61 GQDATRVHARDRKIGFVFQHYALFKHLTVRD----------NIAFGLE------------ 98
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+ + + A+V +L+ + GDR S G + R++
Sbjct: 99 ------------IRKHPKAKIK-----ARVEELLELVQLEG-LGDRYPNQLSGGQRQRVA 140
Query: 270 LGKILLQDPDLLLLDEPTNHLDLDTIE----WLEGYLGKQDVPMVIISHDRAFLDQLCTK 325
L + L +P +LLLDEP LD + WL + V V ++HD+ ++ +
Sbjct: 141 LARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADR 200
Query: 326 IVETEMG 332
IV G
Sbjct: 201 IVVMSNG 207
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 6e-20
Identities = 64/241 (26%), Positives = 107/241 (44%), Gaps = 71/241 (29%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+++ N+SKS+ T + D++ ++KKGE V L+G +G GKTT LR+IAG E+P SG ++
Sbjct: 6 LEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLD 65
Query: 156 -KAKSNMKIAFLSQEFEVSM---------SRTVRE------EFMSAFKEEMEIAGKLERV 199
+ +++ ++ + M TV E + K+ EI RV
Sbjct: 66 GEDITDVPP----EKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKA-EIK---ARV 117
Query: 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259
++ALE L+G L+ F DR
Sbjct: 118 EEALE-------LVG--LEGF--------------------------------ADRKPHQ 136
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPMVIISHD 315
S G Q R++L + L+ +P +LLLDEP + LD + L+ + + V ++HD
Sbjct: 137 LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHD 196
Query: 316 R 316
+
Sbjct: 197 Q 197
|
Length = 352 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 7e-20
Identities = 58/230 (25%), Positives = 106/230 (46%), Gaps = 35/230 (15%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
EN+ K Y ++ V++ V++GE GL+G NGAGKTT ++++ +P SG A +
Sbjct: 4 ENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHD 63
Query: 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEF 220
+ V R VR + I + V L + +++ + RL
Sbjct: 64 V----------VREPREVRRR--------IGIVFQDLSVDDEL-TGWENLYIHARL---- 100
Query: 221 DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280
V ++ +L+ +G + DRLV ++S G + R+ + + L+ P++
Sbjct: 101 -------YGVPGAERRERIDELLDFVGLL-EAADRLVKTYSGGMRRRLEIARSLVHRPEV 152
Query: 281 LLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKI 326
L LDEPT LD T E++E + + +++ +H +QLC ++
Sbjct: 153 LFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRV 202
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 1e-19
Identities = 62/213 (29%), Positives = 99/213 (46%), Gaps = 26/213 (12%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ I N++ + + +L I+ GE A++GP+G GKSTLL++I GLE P G + L
Sbjct: 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLN 62
Query: 485 EHNVLPNYFEQNQAE----------ALDLDKTVLETVA-------EAAEDWRIDD-IKGL 526
VL + + AL TV + +A E + I ++ L
Sbjct: 63 -GRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEEL 121
Query: 527 LGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLDEPTNHLDIP-SKEM--- 581
L + DR + LSGG++ R+A + + V+P LL LDEP LD KE+
Sbjct: 122 LRLVQL-EGLADRYPAQLSGGQRQRVALARALAVEPKVLL-LDEPFGALDAKVRKELRRW 179
Query: 582 LEEAISEYKGTVITVSHDRYFVKQIVNRVVEVK 614
L + T + V+HD+ ++ +RVV +
Sbjct: 180 LRKLHDRLGVTTVFVTHDQEEALELADRVVVLN 212
|
Length = 345 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 1e-19
Identities = 67/256 (26%), Positives = 110/256 (42%), Gaps = 69/256 (26%)
Query: 98 VKLENISKSY----------------------KGVTVLKDVTWEVKKGEKVGLVGVNGAG 135
++LEN+SKSY LKDV++EV +GE++GL+G NGAG
Sbjct: 1 IELENVSKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAG 60
Query: 136 KTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195
K+T LR++AG PDSG V +++ L F E+
Sbjct: 61 KSTLLRLLAGIYPPDSGTV---TVRGRVSSLL-------------GLGGGFNPEL----- 99
Query: 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255
+ +++ L GRLL L +++ + ++ ELG D D
Sbjct: 100 ---------TGRENIYLNGRLL---GLSRKEIDEKIDEIIE------FSELG---DFIDL 138
Query: 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPT----NHLDLDTIEWLEGYLGKQDVPMVI 311
V ++SSG + R++ +PD+LL+DE L L KQ +++
Sbjct: 139 PVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRE-LLKQGKTVIL 197
Query: 312 ISHDRAFLDQLCTKIV 327
+SHD + + +LC + +
Sbjct: 198 VSHDPSSIKRLCDRAL 213
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 1e-19
Identities = 63/198 (31%), Positives = 87/198 (43%), Gaps = 34/198 (17%)
Query: 429 NLEFGYEDRLLFNRANLTIE-RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---- 483
L E RL + + E T I G +G GKSTLL+ I GLEKP GG ++L
Sbjct: 1 MLCVDIEKRLPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTV 60
Query: 484 ---GEHNV-LPNY-------FEQNQAEALDLDKTVLETVA------EAAED-WRIDDIKG 525
+ LP F+Q AL V E +A ED +D++
Sbjct: 61 LFDSRKKINLPPQQRKIGLVFQQY---ALFPHLNVRENLAFGLKRKRNREDRISVDELLD 117
Query: 526 LLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM---- 581
LLG +L+R + LSGGEK R+A + + LL+LDEP + LD +
Sbjct: 118 LLGL----DHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPE 173
Query: 582 LEEAISEYKGTVITVSHD 599
L++ VI V+HD
Sbjct: 174 LKQIKKNLNIPVIFVTHD 191
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 1e-19
Identities = 59/199 (29%), Positives = 86/199 (43%), Gaps = 49/199 (24%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
EN++KSYK V+ DV+ EV GE VGL+G NGAGKTT +I G PDSG +
Sbjct: 6 VAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDD 65
Query: 155 -------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ ++ + I +L QE + TV + M+ LE +K L+ A
Sbjct: 66 EDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAV----------LEIREKDLKKAE 115
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+L LL+EF + + D S S G + R
Sbjct: 116 RKEEL-DALLEEFHITHLR---------------------------DSKAYSLSGGERRR 147
Query: 268 MSLGKILLQDPDLLLLDEP 286
+ + + L +P +LLDEP
Sbjct: 148 VEIARALAANPKFILLDEP 166
|
Length = 243 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 1e-19
Identities = 68/220 (30%), Positives = 106/220 (48%), Gaps = 36/220 (16%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG---------EHNVL-- 489
N + +++ GE +IGPNG GK+TL+ +I G +P+ GEVL EH +
Sbjct: 22 NDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81
Query: 490 --------PNYFE-----QNQAEALDLDKTVLETV---AEAAEDWRIDDIKGLLGRCNFK 533
P FE +N AL+ DK+V ++ A E RID++ +G
Sbjct: 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGL---- 137
Query: 534 ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG-- 591
D DR +LLS G+K L + + LL+LDEP + E E + G
Sbjct: 138 GDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKH 197
Query: 592 TVITVSHDRYFVKQIVNRV-VEVKGSNLQDYAGDYNQVQS 630
+++ V HD FV++I ++V V +GS L + G ++VQ+
Sbjct: 198 SILVVEHDMGFVREIADKVTVLHEGSVLAE--GSLDEVQN 235
|
Length = 249 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 1e-19
Identities = 61/215 (28%), Positives = 96/215 (44%), Gaps = 23/215 (10%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN-----YFEQNQAE 499
L+ ++GE ++GPNG GK+TLL+ I+GL P G V + + Y Q
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60
Query: 500 ALDLDKTVLETVAEA------------AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
A D +V TV D+ ++ L R ++ DR V LSGG
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAA--VRDALRRVGL-TELADRPVGELSGG 117
Query: 548 EKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHDRYFVK 604
++ R+ + + ++L+LDEP LD+P++E+L E E G ++ +HD
Sbjct: 118 QRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAM 177
Query: 605 QIVNRVVEVKGSNLQDYAGDYNQVQSLWFLTIEVS 639
+RVV + G + D Q + W T VS
Sbjct: 178 ATCDRVVLLNGRVIADGTPQQLQDPAPWMTTFGVS 212
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 2e-19
Identities = 59/225 (26%), Positives = 100/225 (44%), Gaps = 34/225 (15%)
Query: 105 KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIA 164
K Y + V ++V++GE G +G NGAGKTT +R++ P SG A ++
Sbjct: 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDV--- 57
Query: 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQ 224
V R VR I + V + L + +++++MGRL L
Sbjct: 58 -------VREPRKVRRSIG--------IVPQYASVDEDL-TGRENLEMMGRLYG----LP 97
Query: 225 RKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
+ + + +L+ + DR V ++S G + R+ + L+ PD+L LD
Sbjct: 98 KDE-------AEERAEELLELFELG-EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLD 149
Query: 285 EPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCTKI 326
EPT LD T + Y L ++ V +++ +H D+LC +I
Sbjct: 150 EPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRI 194
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 2e-19
Identities = 69/219 (31%), Positives = 103/219 (47%), Gaps = 35/219 (15%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------- 489
N +L ++ GE IIGPNG GK+T++ +I G +P G VL G ++
Sbjct: 19 NDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78
Query: 490 -------PNYFE-----QNQAEALDLDKTVLETVAE---AAEDWRIDDIKGLLGRCNFKA 534
P FE +N AL DK+V ++ A E RI+++ +G A
Sbjct: 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGL----A 134
Query: 535 DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--T 592
D DR LLS G+K L +++ LL+LDEP + E E + G +
Sbjct: 135 DEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHS 194
Query: 593 VITVSHDRYFVKQIVNRV-VEVKGSNLQDYAGDYNQVQS 630
V+ V HD FV+ I ++V V +GS L + G +QVQ+
Sbjct: 195 VVVVEHDMEFVRSIADKVTVLHQGSVLAE--GSLDQVQA 231
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 2e-19
Identities = 55/205 (26%), Positives = 85/205 (41%), Gaps = 48/205 (23%)
Query: 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI- 155
+++ I+K + GV DV+ VKKGE L+G NGAGK+T ++I+ G +PDSG +
Sbjct: 4 ALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRV 63
Query: 156 ----------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
+ + I + Q F + + TV E +
Sbjct: 64 DGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENII---------------------- 101
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
+G + L+ R+ A++ +L G D D VA S G Q
Sbjct: 102 -------LGLEPSKGGLIDRRQAR-------ARIKELSERYGLPVDP-DAKVADLSVGEQ 146
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHL 290
R+ + K L + LL+LDEPT L
Sbjct: 147 QRVEILKALYRGARLLILDEPTAVL 171
|
Length = 501 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 3e-19
Identities = 63/237 (26%), Positives = 110/237 (46%), Gaps = 37/237 (15%)
Query: 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
++ EN+S Y LKDV+ E++KGE+V L+G NG+GK+T L+++ G +P SG V+
Sbjct: 4 IEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL- 62
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
V S+ K +E+ K+ V DD +
Sbjct: 63 ---------------------VDGLDTSSEKSLLELRQKVGLVF----QNPDDQLFGPTV 97
Query: 217 LDE--FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL 274
DE F L + + ++ +V++ + +G + DR + S G + R+++ +L
Sbjct: 98 EDEVAFGLENL---GLPREEIEERVAEALELVGLE-ELLDRPPFNLSGGQKQRVAIAGVL 153
Query: 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPM--VIISHDRAFLDQLCTKIV 327
P++LLLDEPT LD L L K ++ +I++HD + + ++V
Sbjct: 154 AMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVV 210
|
Length = 235 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 3e-19
Identities = 66/249 (26%), Positives = 115/249 (46%), Gaps = 62/249 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
++++N+ KS+ VLK + VKKGE V ++G +G+GK+T LR I EEPDSG +I
Sbjct: 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIID 60
Query: 156 -----KAKSNM-----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
K N+ K+ + Q+F + TV E A +V+
Sbjct: 61 GLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLA----------PIKVKG---- 106
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
KA+A + + +L+ ++G AD D A S G Q
Sbjct: 107 ------------------MSKAEA------EERALELLEKVGL-ADKADAYPAQLSGGQQ 141
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAF 318
R+++ + L +P ++L DEPT+ LD LD ++ L ++ + MV+++H+ F
Sbjct: 142 QRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMK----DLAEEGMTMVVVTHEMGF 197
Query: 319 LDQLCTKIV 327
++ +++
Sbjct: 198 AREVADRVI 206
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 3e-19
Identities = 64/226 (28%), Positives = 93/226 (41%), Gaps = 43/226 (19%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LPNY------ 492
N +L + GE +IGPNG GK+TL LI G KP G V+ ++ LP +
Sbjct: 21 NDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLG 80
Query: 493 ----FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK--------------- 533
F Q L TVLE VA A + GLLGR +
Sbjct: 81 IARTF-QITRLFPGL--TVLENVAVGAHARL--GLSGLLGRPRARKEEREARERARELLE 135
Query: 534 ----ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI--- 586
++ DR LS G++ RL + + LL+LDEP L+ E L E I
Sbjct: 136 FVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIREL 195
Query: 587 -SEYKGTVITVSHDRYFVKQIVNRV-VEVKGSNLQDYAGDYNQVQS 630
T++ + HD V + +R+ V G + + G +V++
Sbjct: 196 RDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAE--GTPEEVRN 239
|
Length = 250 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 3e-19
Identities = 48/175 (27%), Positives = 73/175 (41%), Gaps = 15/175 (8%)
Query: 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG--EHNVLPNYFE 494
R+LF + T+ GE + GPNG GK+TLL+++ GL +P GEV +
Sbjct: 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPH 72
Query: 495 QNQAEALDLD--KTVLETVAEAAEDWRID------DIKGLLGRCNFKADMLDRKVSLLSG 546
+N L K L + E W I+ L D + LS
Sbjct: 73 RNILYLGHLPGLKPEL-SALENLHFWAAIHGGAQRTIEDALAAVGL-TGFEDLPAAQLSA 130
Query: 547 GEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSH 598
G++ RLA + + + L +LDEPT LD +L + + G V+ +H
Sbjct: 131 GQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTH 185
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 3e-19
Identities = 108/527 (20%), Positives = 194/527 (36%), Gaps = 132/527 (25%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+ + I KS+ V LK V V GE L+G NGAGK+T +++++G EP G +
Sbjct: 6 ISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITIN 65
Query: 156 ---------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
K + + I + QE V TV E G+ +K
Sbjct: 66 NINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLY---------IGRHL-TKKVCGVN 115
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
+ D M R A+ L + KV D D VA+ S +
Sbjct: 116 IIDWREM-----------RVRAAMMLLRVGLKV------------DLDEKVANLSISHKQ 152
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWL---EGYLGKQDVPMVIISHDRAFLDQLC 323
+ + K L+ D ++++DEPT+ L +++L L K+ +V ISH A + ++C
Sbjct: 153 MLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRIC 212
Query: 324 TKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSG 383
+ V++ + + S + D+ N
Sbjct: 213 DRYT-----------------VMKDGSSVCS---------GMV---SDVSN--------- 234
Query: 384 RASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVV-TIKNLEFGYEDRLLFNR 442
+ RL +++ F + V ++N+ DR
Sbjct: 235 ------DDIVRLMVGRELQNRFNAMK-----ENVSNLAHETVFEVRNVT--SRDRKKVRD 281
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG------------------ 484
+ ++ RGE G G G++ L+ + G++K GGE+ L
Sbjct: 282 ISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMA 341
Query: 485 -------EHNVLPNY-FEQNQAEALDLD----KTVLETVAEAAEDWRIDDIKGLLGRCNF 532
++ PN+ QN A + L K + E E ++ + LL
Sbjct: 342 YITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELL---AL 398
Query: 533 KADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK 579
K +++ ++ LSGG + ++ K++ +++ DEPT +D+ +K
Sbjct: 399 KCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAK 445
|
Length = 510 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 4e-19
Identities = 69/252 (27%), Positives = 112/252 (44%), Gaps = 65/252 (25%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++L+N+SK + VT LKDV+ V KGE G++G +GAGK+T +R I G E P SG+
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 154 VIKAKSNM-------------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG--KLER 198
V+ +++ +I + Q F + SRTV E +EIAG K E
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALP----LEIAGVPKAEI 117
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
++ LE LL+ L D D A
Sbjct: 118 EERVLE-----------LLELVGL---------------------------EDKADAYPA 139
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISH 314
S G + R+ + + L +P +LL DE T+ LD +T + L + + +V+I+H
Sbjct: 140 QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITH 199
Query: 315 DRAFLDQLCTKI 326
+ + ++C ++
Sbjct: 200 EMEVVKRICDRV 211
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 84.4 bits (210), Expect = 4e-19
Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 40/174 (22%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEA 500
+ +L++ RGE A++G NG GKSTL+K++ GL KP GE+L+ V + +A
Sbjct: 17 DGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFA----SPRDA 72
Query: 501 LDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560
G+ V LS GE+ + + + +
Sbjct: 73 RRA---------------------GI------------AMVYQLSVGERQMVEIARALAR 99
Query: 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHDRYFVKQIVNRVV 611
+ LL+LDEPT L E L + I + VI +SH V +I +RV
Sbjct: 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVT 153
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 4e-19
Identities = 57/199 (28%), Positives = 94/199 (47%), Gaps = 28/199 (14%)
Query: 425 VTIKNLEFGYEDR---LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
+ KN+ F Y R + +LTI G+ A++G +GCGKST++ L+ P GE+
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 482 LLGEHNVL-----------------PNYFEQNQAE--ALDLDKTVLETVAEAAEDWRIDD 522
LL ++ P F+ AE E V EAA+ I D
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 523 -IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM 581
I L + ++ + S LSGG+K R+A + +++ +L+LDE T+ LD S+++
Sbjct: 121 FIMSLPDGYD---TLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKL 177
Query: 582 LEEAISEYKG--TVITVSH 598
++EA+ T I ++H
Sbjct: 178 VQEALDRAMKGRTTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 5e-19
Identities = 60/247 (24%), Positives = 107/247 (43%), Gaps = 60/247 (24%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI---- 155
L+NISK + +L D+ ++KG+ ++G +G+GK+T L II E+ DSG V
Sbjct: 1 LKNISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQ 60
Query: 156 -------KAKSNM---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
K S K+ +L Q F + + TV +E +++ K +++ K
Sbjct: 61 ETPPLNSKKASKFRREKLGYLFQNFALIENETV--------EENLDLGLKYKKLSK---- 108
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
+ + L++ L + Q K+ +L S G Q
Sbjct: 109 -KEKREKKKEALEKVGLNLKLKQ---------KIYEL------------------SGGEQ 140
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQ 321
R++L + +L+ P L+L DEPT LD ++ L L + ++I++HD Q
Sbjct: 141 QRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLE-LNDEGKTIIIVTHDPEVAKQ 199
Query: 322 LCTKIVE 328
+++E
Sbjct: 200 -ADRVIE 205
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 7e-19
Identities = 57/194 (29%), Positives = 96/194 (49%), Gaps = 25/194 (12%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LPNY------ 492
+ +L I +GE + GP+G GK+TLLKL+ G P G+V + +V L
Sbjct: 19 HDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLR 78
Query: 493 ------FEQNQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSL- 543
F+ + L D+TV E VA E + +I+ +G + + + +
Sbjct: 79 RRIGVVFQDFR---LLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP 135
Query: 544 --LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP-SKEMLE--EAISEYKGTVITVSH 598
LSGGE+ R+A + +V LL+ DEPT +LD S+ +L+ + +++ TVI +H
Sbjct: 136 EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATH 195
Query: 599 DRYFVKQIVNRVVE 612
D V ++ +RV+
Sbjct: 196 DLSLVDRVAHRVII 209
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 8e-19
Identities = 59/214 (27%), Positives = 93/214 (43%), Gaps = 29/214 (13%)
Query: 427 IKNLEFGYEDRL-LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE--KPRGGEVLL 483
IK+L E + + NLT++ GE AI+GPNG GKSTL IMG + GE+L
Sbjct: 6 IKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILF 65
Query: 484 GEHNVL---PNYFE----------QNQAE-----ALDLDKTVLETVAEAAEDWR--IDDI 523
++L P+ E Q E D + + A I ++
Sbjct: 66 DGEDILELSPD--ERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKEL 123
Query: 524 KGLLGRCNFKADMLDRKVSL-LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML 582
K + L+R V+ SGGEK R + ++ L +LDEP + LDI + +++
Sbjct: 124 KEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIV 183
Query: 583 EEAISEYKG---TVITVSHDRYFVKQIVNRVVEV 613
E I+ + V+ ++H + + I V V
Sbjct: 184 AEGINALREEGRGVLIITHYQRLLDYIKPDKVHV 217
|
Length = 251 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 1e-18
Identities = 61/247 (24%), Positives = 105/247 (42%), Gaps = 55/247 (22%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
+++ ++KS+ +L V +V +GE + ++G +G+GK+T LR+I G PD G +
Sbjct: 9 IEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILID 68
Query: 155 ---IKAKSN-------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204
I S ++ L Q+ + S TV E +E KL E
Sbjct: 69 GEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLRE----HTKLP------E 118
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
S + ++ LM K + V L A L P + S G
Sbjct: 119 SLIRELVLM------------KLELVGLRGAAA---DLYP-------------SELSGGM 150
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQ-DVPMVIISHDRAFLD 320
+ R++L + + DP+LL LDEPT+ LD I+ L L + +++++HD L
Sbjct: 151 RKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLL 210
Query: 321 QLCTKIV 327
+ ++
Sbjct: 211 TIADRVA 217
|
Length = 263 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 1e-18
Identities = 126/561 (22%), Positives = 220/561 (39%), Gaps = 147/561 (26%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-IK 156
+ +ISK Y GV VLK + + + GE L+G NGAGK+T ++IIAG PDSG + I
Sbjct: 12 LCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIG 71
Query: 157 AKS----------NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
+ I + QE + + +V+E + + K++++ AL
Sbjct: 72 GNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQ 131
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
+D LD + A +L+ D ++ +++
Sbjct: 132 LD--------LD--------SSAGSLEVADRQIVEIL----------------------- 152
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLC 323
+ L++D +L+LDEPT L E L L Q V +V ISH + QL
Sbjct: 153 -----RGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLA 207
Query: 324 TKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSG 383
+I V R +G A + ++ T D+I + A
Sbjct: 208 DRI-----SVMR--DG----------------TIALSGKTADLS-TDDIIQAITPAAREK 243
Query: 384 RASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEF-GYEDRLLFNR 442
S+++K +E P R+Q P V+T+++L G+ +
Sbjct: 244 SLSASQKL--------WLELPGNRRQQAAGAP--------VLTVEDLTGEGFRN------ 281
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------- 488
+L + GE + G G G++ L + + GL RGG ++L +
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341
Query: 489 -LPNYFEQNQAEALDLDKTV---------------LETVAEAAEDWRIDDIKGLLGRCNF 532
LP E Q+ L LD + ++ E A ++ + L
Sbjct: 342 YLP---EDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENA---VLERYRRALN---I 392
Query: 533 KADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE---MLEEAISEY 589
K + ++ LSGG + ++ K + LL++DEPT +D+ ++ L +I+
Sbjct: 393 KFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ 452
Query: 590 KGTVITVSHDRYFVKQIVNRV 610
V+ +S D ++Q+ +RV
Sbjct: 453 NVAVLFISSDLEEIEQMADRV 473
|
Length = 510 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 1e-18
Identities = 65/238 (27%), Positives = 112/238 (47%), Gaps = 42/238 (17%)
Query: 387 SAEKKLERLQEEEQI---EKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGY-EDRLLFNR 442
+AE+ E L EE ++ P + I F +N+ F Y + +
Sbjct: 301 AAERLFELLDEEPEVEDPPDPLKDTIGSIEF-------------ENVSFSYPGKKPVLKD 347
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPN---Y 492
+ +IE GEK AI+GP+G GKSTL+KL++ L P GE+L+ ++ L
Sbjct: 348 ISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGI 407
Query: 493 FEQNQAEALDLDKTVLETVA---EAAEDWRIDDIKGLLGRCNFKADM---LDRKV----S 542
Q + L T+ E +A A D I++ L F A++ D V
Sbjct: 408 VSQ---DPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGV 464
Query: 543 LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSH 598
LSGG++ RLA + +++ +L+LDE T+ LD ++ ++++A+ + T + ++H
Sbjct: 465 NLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAH 522
|
Length = 567 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 1e-18
Identities = 64/214 (29%), Positives = 102/214 (47%), Gaps = 29/214 (13%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+TI+N+ Y +++ + +L I +G T+IIGPNG GKSTLL ++ L K GE+ +
Sbjct: 2 ITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITID 61
Query: 485 EHNVLPNYFEQNQAEALDLDK---------TVLETVA----------EAAEDWRIDDIKG 525
+ + + A+ L + K TV + V ED RI I
Sbjct: 62 GLEL-TSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRI--INE 118
Query: 526 LLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV-LDEPTNHLDIP-SKEM-- 581
+ + + D+ DR + LSGG++ R AF ++ T V LDEP N+LD+ S ++
Sbjct: 119 AIEYLHLE-DLSDRYLDELSGGQRQR-AFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMK 176
Query: 582 -LEEAISEYKGTVITVSHDRYFVKQIVNRVVEVK 614
L E T++ V HD F + +V +K
Sbjct: 177 ILRRLADELGKTIVVVLHDINFASCYSDHIVALK 210
|
Length = 252 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.8 bits (211), Expect = 2e-18
Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 36/171 (21%)
Query: 426 TIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
++NL GY + + L +L +ERGE A++G NG GK+TLLK IMGL +PR G ++
Sbjct: 5 EVENLSAGYGKIQALRG-VSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFD 63
Query: 485 EHNV--LP----------------NYF-----EQNQAEALDLDKTVLETVAEAAEDWRID 521
++ LP F E+N + + A++ ++
Sbjct: 64 GEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARR------DKEAQERDLE 117
Query: 522 DIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPT 571
++ L R + +++ LSGGE+ LA + M +P LL+LDEP+
Sbjct: 118 EVYELFPRL---KERRNQRAGTLSGGEQQMLAIARALMSRPK-LLLLDEPS 164
|
Length = 237 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 2e-18
Identities = 61/233 (26%), Positives = 102/233 (43%), Gaps = 52/233 (22%)
Query: 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI- 155
+++ N+SK + L DV+ ++ GE V L+G +G+GKTT LR+IAG E PDSG ++
Sbjct: 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILF 61
Query: 156 --KAKSNMK-----IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
+ +++ + F+ Q + + TV + AF +
Sbjct: 62 GGEDATDVPVQERNVGFVFQHYALFRHMTVFDNV--AFGLRV------------------ 101
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG--DRLVASFSSGWQM 266
+ +++ + AKV +L L D DR A S G +
Sbjct: 102 ---------------KPRSERPPEAEIRAKVHEL---LKLVQLDWLADRYPAQLSGGQRQ 143
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315
R++L + L +P +LLLDEP LD + L +L + V V ++HD
Sbjct: 144 RVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHD 196
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 83.7 bits (208), Expect = 2e-18
Identities = 57/195 (29%), Positives = 89/195 (45%), Gaps = 26/195 (13%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR--GGEVLL 483
IK+L + + NLTI++GE A++GPNG GKSTL K IMG K GE+L
Sbjct: 2 EIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILF 61
Query: 484 GEHNVLPNYFEQNQAEALDLDKTVLETVAEA-AEDWRIDDIKGLLGRCNFKADMLDRKVS 542
++ L ++ + A I +K AD L R V+
Sbjct: 62 KGEDIT----------DLPPEERARLGIFLAFQYPPEIPGVK--------NADFL-RYVN 102
Query: 543 L-LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSH 598
SGGEK R + ++ L +LDEP + LDI + ++ E I++ + +V+ ++H
Sbjct: 103 EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITH 162
Query: 599 DRYFVKQIVNRVVEV 613
+ + I V V
Sbjct: 163 YQRLLDYIKPDRVHV 177
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 2e-18
Identities = 62/223 (27%), Positives = 97/223 (43%), Gaps = 33/223 (14%)
Query: 423 SVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
++ +KNL Y + L + NL I +GE AIIGP+G GKSTLL+ + GL P GE
Sbjct: 2 MMIEVKNLSKTYPGGHQALKD-VNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE 60
Query: 481 VLLGEHNV-------LPNYFEQ----NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLG- 528
+L + L Q L +VLE V + L G
Sbjct: 61 ILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVL-LGRLGYTSTWRSLFGL 119
Query: 529 ----------RCNFKADMLDR---KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575
+ +LD+ + S LSGG++ R+A + +V+ +++ DEP LD
Sbjct: 120 FSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLD 179
Query: 576 IPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVK 614
S ++L++ E TVI H K+ +R++ +K
Sbjct: 180 PESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLK 222
|
Length = 258 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 2e-18
Identities = 60/214 (28%), Positives = 92/214 (42%), Gaps = 60/214 (28%)
Query: 99 KLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
++EN+SK+Y G LKDV+ + GE V L+G +GAGK+T LR + G EP SG+V+
Sbjct: 2 EVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLID 61
Query: 156 ---------KAKSNM--KIAFLSQEFEVSMSRTVREE-------FMSAFKEEMEIAGKLE 197
KA + +I + Q+F + +V E S ++ + K E
Sbjct: 62 GTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEE 121
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
+ Q+AL L+ L LD + +L
Sbjct: 122 K-QRALA-----------ALERVGL---------LDKAYQRADQL--------------- 145
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
S G Q R+++ + L+Q P L+L DEP LD
Sbjct: 146 ---SGGQQQRVAIARALMQQPKLILADEPVASLD 176
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 2e-18
Identities = 60/187 (32%), Positives = 79/187 (42%), Gaps = 41/187 (21%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP----------NYF 493
+ + GE ++GPNG GKSTLL + GL P G + + Y
Sbjct: 16 SAEVRAGEILHLVGPNGAGKSTLLARMAGL-LPGSGSIQFAGQPLEAWSAAELARHRAYL 74
Query: 494 EQNQAEA--------LDL---DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVS 542
Q Q L L DKT E VA A ++++ LG D L R V+
Sbjct: 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASA-----LNEVAEALGL----DDKLGRSVN 125
Query: 543 LLSGGE--KARLAFCKFMVKP-----STLLVLDEPTNHLDIPSKEMLEEAISEY---KGT 592
LSGGE + RLA V P LL+LDEP N LD+ + L+ +SE
Sbjct: 126 QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIA 185
Query: 593 VITVSHD 599
V+ SHD
Sbjct: 186 VVMSSHD 192
|
Length = 248 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 2e-18
Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Query: 464 STLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN---------QAEALDLDKTVLETVAEA 514
STLLKLI GL +P G +LL + + Q L + TV E +
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 515 A-EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572
+ + L R + V LSGG+K R+A + ++K LL+LDEPT
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 2e-18
Identities = 61/249 (24%), Positives = 118/249 (47%), Gaps = 49/249 (19%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+++EN++K + VT L D+++ V+KGE GL+G NGAGKTT +R+I G PDSG V+
Sbjct: 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFD 60
Query: 158 KSNM------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD 211
+ +I +L +E + V ++ + +L+ ++K E A +D
Sbjct: 61 GKPLDIAARNRIGYLPEERGLYPKMKVIDQLV--------YLAQLKGLKK--EEARRRID 110
Query: 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271
L+ +L + + +V +L S G Q ++
Sbjct: 111 ---EWLERLELSEYA---------NKRVEEL------------------SKGNQQKVQFI 140
Query: 272 KILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVE 328
++ DP+LL+LDEP + LD ++ ++ + L + +++ +H +++LC +++
Sbjct: 141 AAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLL 200
Query: 329 TEMGVSRTY 337
G + Y
Sbjct: 201 LNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 3e-18
Identities = 53/180 (29%), Positives = 77/180 (42%), Gaps = 29/180 (16%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG------------EHNVLPN 491
N ERGE A++G NG GKSTLL + GL +P+ G VL+ E
Sbjct: 12 NFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVG 71
Query: 492 YFEQNQAEALDLDKTVLETVA---------EAAEDWRIDDIKGLLGRCNFKADMLDRKVS 542
Q+ + L V + VA EA + R+ + +G + +R
Sbjct: 72 LVFQDPDDQL-FAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLR----ERPTH 126
Query: 543 LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI---SEYKGTVITVSHD 599
LSGGEK R+A + +L+LDEPT LD +E + + TV+ +HD
Sbjct: 127 CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHD 186
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 4e-18
Identities = 57/228 (25%), Positives = 94/228 (41%), Gaps = 42/228 (18%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477
++ ++NL + A + +E GE I+G +G GKSTL +MGL
Sbjct: 3 SPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEG 62
Query: 478 G----GEVLLGEHNVLPN--------------YFEQNQAEALDLDKTVLETVAEA----- 514
G GEV+L ++L Q+ +L+ T+ + + EA
Sbjct: 63 GRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG 122
Query: 515 --AEDWRIDDIKGLLGRCNFKADML-DRKVSLLSGGEKARL----AFCKFMVKPSTLLVL 567
+ LL + DR LSGG + R+ A KP LL+
Sbjct: 123 KGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALAL---KPK-LLIA 178
Query: 568 DEPTNHLDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVV 611
DEPT LD+ ++ ++L++ E V+ ++HD V ++ +RVV
Sbjct: 179 DEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVV 226
|
Length = 539 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 4e-18
Identities = 66/219 (30%), Positives = 85/219 (38%), Gaps = 48/219 (21%)
Query: 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN- 487
NL + R L + +L + GE AI+GPNG GKSTLLK + G P GEV L
Sbjct: 6 NLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPL 65
Query: 488 -------------VLPNYFEQNQAEALDLDKTVLETV----------AEAAEDWRIDDIK 524
VLP Q +L TV E V E ED RI
Sbjct: 66 NSWPPEELARHRAVLP------QNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAA-- 117
Query: 525 GLLGRCNFKADML---DRKVSLLSGGEKARLAFCKFM------VKPSTLLVLDEPTNHLD 575
+ D+ R LSGGE+ R+ + + V L LDEPT+ LD
Sbjct: 118 ----QALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALD 173
Query: 576 IPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVV 611
I + + G V+ V HD Q +R+V
Sbjct: 174 IAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIV 212
|
Length = 259 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 5e-18
Identities = 64/246 (26%), Positives = 116/246 (47%), Gaps = 55/246 (22%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++ N+S SY + L +V+ ++ GEKV ++G G+GK+T L+++AG +P SG+V+
Sbjct: 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62
Query: 156 KAKSNMK----------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
++++ I ++ Q+ + T+R+ ER+ +A E
Sbjct: 63 LDGTDIRQLDPADLRRNIGYVPQDVTL-FYGTLRDNITLGAPL-----ADDERILRAAEL 116
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
A D + + + DL ++G + G L S G +
Sbjct: 117 AGVT-DFVNKHPNGLDL----------------------QIG---ERGRGL----SGGQR 146
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQ 321
++L + LL DP +LLLDEPT+ +D+++ E L LG D ++II+H + LD
Sbjct: 147 QAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPSLLD- 203
Query: 322 LCTKIV 327
L +I+
Sbjct: 204 LVDRII 209
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 5e-18
Identities = 60/202 (29%), Positives = 102/202 (50%), Gaps = 27/202 (13%)
Query: 432 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--- 488
+GY +L + +LTI+ KT I+G +G GKSTL KL++G + R GE+LL ++
Sbjct: 483 YGYGSNILSD-ISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDI 541
Query: 489 -------LPNYFEQNQAEALDLDKTVLET-VAEAAEDWRIDDIKGLLGRCNFKADM---- 536
NY Q E ++LE + A E+ D+I K D+
Sbjct: 542 DRHTLRQFINYLPQ---EPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMP 598
Query: 537 ------LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD-IPSKEMLEEAISEY 589
L + S +SGG+K R+A + ++ S +L+LDE T++LD I K+++ ++
Sbjct: 599 LGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQ 658
Query: 590 KGTVITVSHDRYFVKQIVNRVV 611
T+I V+H R V + ++++
Sbjct: 659 DKTIIFVAH-RLSVAKQSDKII 679
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 6e-18
Identities = 68/260 (26%), Positives = 120/260 (46%), Gaps = 53/260 (20%)
Query: 385 ASSAEKKLERL----QEEEQIEKPFQRKQM--KIRFPERGRSGRSVVTIKNLEFGY--ED 436
A +A + L+ L E + + R ++ +I F +N+ F Y ++
Sbjct: 431 AKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEF-------------RNVSFAYPGQE 477
Query: 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LP---- 490
+ +LTI GEK AIIG G GKSTLLKL++GL +P G VLL ++ +
Sbjct: 478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADL 537
Query: 491 ----NYFEQNQA-------EALDLDKTVL--ETVAEAAEDWRIDDIKGLLGRCNFKADML 537
Y Q+ + + L E + AAE + G+ D L
Sbjct: 538 RRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAE------LAGVTEFVRRHPDGL 591
Query: 538 DRKVS----LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG-- 591
D ++ LSGG++ +A + +++ +L+LDEPT+ +D S+E ++ + +
Sbjct: 592 DMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGK 651
Query: 592 TVITVSHDRYFVKQIVNRVV 611
T++ V+H R + +V+R++
Sbjct: 652 TLVLVTH-RTSLLDLVDRII 670
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 6e-18
Identities = 68/226 (30%), Positives = 102/226 (45%), Gaps = 17/226 (7%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
KNL + + N +LT+ + ++GPNG GKSTLLK+I G+ +P GE++ H
Sbjct: 3 TKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGH 62
Query: 487 ----NVLPNYFEQNQAEALDLDKTVLE-----TVAEAAEDWRIDDIKGLLGRCNFKADML 537
L ++ L + T E T D RID++ ++ N
Sbjct: 63 PWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTG---- 118
Query: 538 DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVI 594
+K S G K RL ++ LL+LDEPTN LD + L E I + TVI
Sbjct: 119 KKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVI 178
Query: 595 TVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSLWFLTIEVSK 640
SH V+Q+ + + + L Y G N+ ++L L +EV K
Sbjct: 179 LSSHILSEVQQLADHIGIISEGVLG-YQGKINKSENLEKLFVEVVK 223
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 6e-18
Identities = 56/196 (28%), Positives = 94/196 (47%), Gaps = 23/196 (11%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ +N+ Y ++ + NLTIE GE +IGP+G GK+T LK+I L +P GE+L+
Sbjct: 2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILID 61
Query: 485 EHNV--LPNYFEQN------QAEALDLDKTVLETVA---------EAAEDWRIDDIKGLL 527
++ L + Q L TV E +A + R D++ L+
Sbjct: 62 GEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLV 121
Query: 528 GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAIS 587
G ++ DR LSGG++ R+ + + +L++DEP LD +++ L+E I
Sbjct: 122 GLD--PSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIK 179
Query: 588 ----EYKGTVITVSHD 599
E T++ V+HD
Sbjct: 180 ELQKELGKTIVFVTHD 195
|
Length = 309 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 6e-18
Identities = 50/182 (27%), Positives = 89/182 (48%), Gaps = 23/182 (12%)
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--PNYFEQNQAEALDL 503
+I E I+GPNG GK+T +K++ G+ KP G++ + V P Y + D
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKA------DY 74
Query: 504 DKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKF 557
+ TV + ++ +D ++ + K L +LDR+V LSGGE R+A
Sbjct: 75 EGTVRDLLSSITKDFYTHPYFKTEIAKPLQ-----IEQILDREVPELSGGELQRVAIAAC 129
Query: 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEV 613
+ K + + +LDEP+ +LD+ + M + I + + T V HD + + +R++
Sbjct: 130 LSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVF 189
Query: 614 KG 615
+G
Sbjct: 190 EG 191
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 6e-18
Identities = 64/234 (27%), Positives = 111/234 (47%), Gaps = 27/234 (11%)
Query: 389 EKKLERLQE--EEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE--DRLLFNRAN 444
E L RL + ++ + ++ E V ++N+ FGY + L +
Sbjct: 440 EGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFS 499
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL-GE------HNVLPN------ 491
LT++ G++ A++G +G GKST+ KL+ GL +P GE+L G VL N
Sbjct: 500 LTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVD 559
Query: 492 ----YFEQNQAEALDL-DKTVLET-VAEAAEDWRI-DDIKGLLGRCNFKADMLDRKVSLL 544
FE + L L D T+ + + A +D I D I G + L + L
Sbjct: 560 QDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDA---ELAEGGANL 616
Query: 545 SGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSH 598
SGG++ RL + +V+ ++L+LDE T+ LD +++++++ + T I V+H
Sbjct: 617 SGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAH 670
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 7e-18
Identities = 61/227 (26%), Positives = 88/227 (38%), Gaps = 48/227 (21%)
Query: 411 KIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
+ G S + I + + + + RGE+ +IG NG GKSTLL+L+
Sbjct: 9 SYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLL 68
Query: 471 MGLEKPRGGEV-------------------LLGEHNVLPNYFEQNQAEALDLDKTVLETV 511
G+ P G V L G N+ N L L +
Sbjct: 69 AGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLN------GRLLGLSR------ 116
Query: 512 AEAAEDWRIDDIKGL--LGRCNFKADMLDRKVSLLSGGEKARLAF-CKFMVKPSTLLVLD 568
E E +ID+I LG +D V S G KARLAF ++P LL+ D
Sbjct: 117 KEIDE--KIDEIIEFSELGDF------IDLPVKTYSSGMKARLAFAIATALEPDILLI-D 167
Query: 569 EPT----NHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVV 611
E + L E + + K TVI VSHD +K++ +R +
Sbjct: 168 EVLAVGDAAFQEKCQRRLRELLKQGK-TVILVSHDPSSIKRLCDRAL 213
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 7e-18
Identities = 64/191 (33%), Positives = 90/191 (47%), Gaps = 33/191 (17%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG-------------------E 485
LT +GE TAI+GP+G GKSTLL LI G E P+ G VL+ E
Sbjct: 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQE 78
Query: 486 HNVLPNY-FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLL 544
+N+ + EQN L + +A I+ L R A + R L
Sbjct: 79 NNLFAHLTVEQNVGLGLSPGLKLTAEDRQA--------IEVALARVGL-AGLEKRLPGEL 129
Query: 545 SGGEKARLAFCKFMVKPSTLLVLDEPTNHLD-IPSKEMLE---EAISEYKGTVITVSHDR 600
SGGE+ R+A + +V+ +L+LDEP LD EML+ + +E K TV+ V+H
Sbjct: 130 SGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP 189
Query: 601 YFVKQIVNRVV 611
K++ RVV
Sbjct: 190 EDAKRLAQRVV 200
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 8e-18
Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 30/181 (16%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
+ L F Y R + + T+ G A++GPNG GKSTL L+ L + G++ + H
Sbjct: 4 VAGLSFRYGARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGH 63
Query: 487 NV----------LPNYFEQNQAEALDLDKTVLETV-----------AEAAEDWRIDDIKG 525
++ L F+Q LDLD +V + + AEA RI ++
Sbjct: 64 DLRRAPRAALARLGVVFQQP---TLDLDLSVRQNLRYHAALHGLSRAEARA--RIAELLA 118
Query: 526 LLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585
LG A+ D KV L+GG + R+ + ++ LL+LDEPT LD S+ +
Sbjct: 119 RLGL----AERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAH 174
Query: 586 I 586
+
Sbjct: 175 V 175
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 9e-18
Identities = 62/216 (28%), Positives = 108/216 (50%), Gaps = 26/216 (12%)
Query: 424 VVTIKNLEFGYE---DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
+V +N+ F Y D L+ + T+ GE TA++GP+G GKST++ L+ +P+GG+
Sbjct: 11 IVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQ 70
Query: 481 VLLG-------EHNVL----------PNYFEQNQAE--ALDLDKTVLETVAEAAEDWRID 521
VLL EH L P F ++ + A L E V EAA+
Sbjct: 71 VLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAH 130
Query: 522 DIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM 581
L + ++ K S LSGG+K R+A + +++ +L+LDE T+ LD S++
Sbjct: 131 SFISELAS-GYDTEV-GEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQ 188
Query: 582 LEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKG 615
+++A+ ++ + TV+ ++H V++ +V G
Sbjct: 189 VQQALYDWPERRTVLVIAHRLSTVERADQILVLDGG 224
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 9e-18
Identities = 57/217 (26%), Positives = 94/217 (43%), Gaps = 32/217 (14%)
Query: 425 VTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
V KN+ F Y + +L I GE A++GP+G GKSTL+ LI G +L
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 483 LGEHNV-------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCN---F 532
+ H+V L + + TV E +A ++++ N F
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEF 120
Query: 533 KADM---LDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585
++ D + LSGG++ R+A + ++K +L+LDE T+ LD S+ +++ A
Sbjct: 121 IMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAA 180
Query: 586 ISE-YKG-TVITVSH--------DRYFV---KQIVNR 609
+ K T ++H DR V +IV R
Sbjct: 181 LERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVER 217
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 9e-18
Identities = 52/201 (25%), Positives = 93/201 (46%), Gaps = 34/201 (16%)
Query: 425 VTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+ +N+ F Y E + + N +I+ GE AI+GP G GK+TL+ L+M P+ G++L+
Sbjct: 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILI 62
Query: 484 G-------EHNVLPNYFEQNQAEALDLDKTVLET------------VAEAAEDWRIDDI- 523
L + + T++E V EAA++ D
Sbjct: 63 DGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFI 122
Query: 524 ----KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK 579
G +L LS GE+ LA + M++ +L+LDE T+++D ++
Sbjct: 123 MKLPNGY-------DTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETE 175
Query: 580 EMLEEAISE-YKG-TVITVSH 598
++++EA+ + KG T I ++H
Sbjct: 176 KLIQEALEKLMKGRTSIIIAH 196
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 1e-17
Identities = 69/253 (27%), Positives = 115/253 (45%), Gaps = 59/253 (23%)
Query: 98 VKLENISKSYKGVTV-LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
++ EN+SK+Y G L+DV++ + KGE V L G +GAGK+T L++I G+E P G ++
Sbjct: 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILV 61
Query: 157 AK---SNMK---IAFLS-------QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL 203
S +K I FL Q+F + RTV E A + + GK R +
Sbjct: 62 NGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENV--ALP--LRVIGKPPREIRRR 117
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
S V +DL+G L K L +L S G
Sbjct: 118 VSEV--LDLVG--------------------LKHKARALPSQL--------------SGG 141
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFL 319
Q R+++ + ++ P +LL DEPT +LD D + E + + +++ +HD +
Sbjct: 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEE-INRLGTTVLMATHDLELV 200
Query: 320 DQLCTKIVETEMG 332
+++ +++ E G
Sbjct: 201 NRMRHRVLALEDG 213
|
Length = 223 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 1e-17
Identities = 53/215 (24%), Positives = 93/215 (43%), Gaps = 60/215 (27%)
Query: 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI- 155
++++N+SK+Y G LKDV E+ +GE V ++G +GAGK+T LR + G +P SG ++
Sbjct: 4 IEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILF 63
Query: 156 ----------KAKSNM--KIAFLSQEFEVSMSRTV-------REEFMSAFKEEMEIAGKL 196
K + I + Q+F + +V R + S ++ + K
Sbjct: 64 NGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKE 123
Query: 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256
++ +AL++ L+ + LD + S L
Sbjct: 124 DK-AQALDA-----------LERVGI---------LDKAYQRASTL-------------- 148
Query: 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
S G Q R+++ + L+Q P ++L DEP LD
Sbjct: 149 ----SGGQQQRVAIARALVQQPKIILADEPVASLD 179
|
Length = 258 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 1e-17
Identities = 66/213 (30%), Positives = 100/213 (46%), Gaps = 42/213 (19%)
Query: 433 GYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL--------- 483
G D + +L+I +GE AI+G +G GKSTLL L+ GL+ P GEVL
Sbjct: 14 GKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLS 73
Query: 484 -GEHNVLPN------YFEQNQAEALDLDKTVLETVA-----------EAAEDWRIDDIKG 525
E L N Y Q L D T LE VA EA E
Sbjct: 74 SNERAKLRNKKLGFIY----QFHHLLPDFTALENVAMPLLIGKKSVKEAKE-----RAYE 124
Query: 526 LLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK----EM 581
+L + + ++ + S LSGGE+ R+A + +V +L++ DEPT +LD + ++
Sbjct: 125 MLEKVGLE-HRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDL 183
Query: 582 LEEAISEYKGTVITVSHDRYFVKQIVNRVVEVK 614
+ E E + + V+HD K++ +RV+E+K
Sbjct: 184 MLELNRELNTSFLVVTHDLELAKKL-DRVLEMK 215
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.1 bits (205), Expect = 1e-17
Identities = 65/195 (33%), Positives = 91/195 (46%), Gaps = 25/195 (12%)
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL-GEH 486
+ L GY + + I G TAIIGPNGCGKSTLL+ + L P G V L GEH
Sbjct: 11 EQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEH 70
Query: 487 NVLPNYFEQNQAEALDL---------DKTVLETVAEAA-------EDWRIDDIKGLLG-- 528
+ +Y + A + L D TV E VA WR +D + +
Sbjct: 71 --IQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAM 128
Query: 529 RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE 588
+ + D+ V LSGG++ R + + + +++LDEPT LDI + L E +SE
Sbjct: 129 QATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSE 188
Query: 589 Y---KG-TVITVSHD 599
KG T+ V HD
Sbjct: 189 LNREKGYTLAAVLHD 203
|
Length = 265 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 1e-17
Identities = 61/210 (29%), Positives = 106/210 (50%), Gaps = 33/210 (15%)
Query: 415 PERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474
+ ++ ++ I+NL ++ + + +LTI +GE A++G +GCGKSTLL+++ G E
Sbjct: 10 AKTRKALTPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFE 69
Query: 475 KPRGGEVLLGEHNV--LPNY------------------FEQNQAEALDLDKTVLETVAEA 514
+P G+++L ++ +P Y EQN A L DK + +A
Sbjct: 70 QPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDK-----LPKA 124
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
R++++ GL+ F RK LSGG++ R+A + + K LL+LDEP L
Sbjct: 125 EIASRVNEMLGLVHMQEFAK----RKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGAL 180
Query: 575 DIPSKEMLEEA---ISEYKG-TVITVSHDR 600
D ++ ++ I E G T + V+HD+
Sbjct: 181 DKKLRDRMQLEVVDILERVGVTCVMVTHDQ 210
|
Length = 377 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 1e-17
Identities = 56/198 (28%), Positives = 100/198 (50%), Gaps = 22/198 (11%)
Query: 423 SVVTIKNLEFGYEDRLLF--NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
S++ KN+ F Y+ F + I +G+ T+I+G NG GKST+ KL++G+EK + GE
Sbjct: 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGE 65
Query: 481 VLLGEHNVLPNYFE----------QNQAEALDLDKTVLETVAEAAEDWRI--DDIKGLLG 528
+ + + FE QN + + V VA E+ + D++ +
Sbjct: 66 IFYNNQAITDDNFEKLRKHIGIVFQN-PDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVS 124
Query: 529 RCNFKADMLDRKVS---LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585
+ DML+R LSGG+K R+A + ++++LDE T+ LD +++ L +
Sbjct: 125 EALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDL 184
Query: 586 ISEYKG----TVITVSHD 599
+ + K T+I+++HD
Sbjct: 185 VRKVKSEHNITIISITHD 202
|
Length = 269 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.0 bits (213), Expect = 2e-17
Identities = 85/321 (26%), Positives = 137/321 (42%), Gaps = 69/321 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+K+E +S Y +L + + G ++GL+G NGAGK+T ++++AG+ P SG + A
Sbjct: 313 LKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLA 372
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
K +K+ + +Q + EF+ A
Sbjct: 373 KG-IKLGYFAQH---------QLEFLRA-------------------------------- 390
Query: 218 DEFDL--LQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
DE L L R A L+ K+ + GF D FS G + R+ L I+
Sbjct: 391 DESPLQHLARLAPQE----LEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVW 446
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335
Q P+LLLLDEPTNHLDLD + L L + +V++SHDR L + G
Sbjct: 447 QRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVE 506
Query: 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLE-- 393
++G+ Y W+ +KQ+ + ++ ANS +A +K+ E
Sbjct: 507 PFDGDLEDY----QQWLSDV----QKQENQTDEAPK-----ENNANSAQARKDQKRREAE 553
Query: 394 -RLQEE---EQIEKPFQRKQM 410
R Q + ++I + K+M
Sbjct: 554 LRTQTQPLRKEIAR--LEKEM 572
|
Length = 638 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 2e-17
Identities = 50/206 (24%), Positives = 91/206 (44%), Gaps = 17/206 (8%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++NL Y + + +LT+ G ++GPNG GK+TL++++ L P G + +
Sbjct: 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRID 59
Query: 485 EHNVL--PNYFEQN-----QAEALDLDKTVLETVAEAAEDWRIDD------IKGLLGRCN 531
+VL P + Q + + TV E + A I + +L N
Sbjct: 60 GQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVN 119
Query: 532 FKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG 591
D +K+ LSGG + R+ + +V ++L++DEPT LD + +SE
Sbjct: 120 L-GDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE 178
Query: 592 TVITV--SHDRYFVKQIVNRVVEVKG 615
I + +H V+ + N+V +
Sbjct: 179 DRIVILSTHIVEDVESLCNQVAVLNK 204
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 2e-17
Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 11/172 (6%)
Query: 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---GEHNVLPNYF 493
R LF+ + T+ GE + GPNG GK+TLL+++ GL P G VLL +
Sbjct: 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIA 72
Query: 494 EQ----NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
A + +VLE + D + ++ L R DR V+ LS G++
Sbjct: 73 RGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNG-FEDRPVAQLSAGQQ 131
Query: 550 ARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSH 598
R+A + ++ L +LDEPT LD EA++ + G V+ +H
Sbjct: 132 RRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTH 183
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 2e-17
Identities = 58/195 (29%), Positives = 95/195 (48%), Gaps = 29/195 (14%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPNYFEQN 496
N++I GE ++GP+G GKSTLLKLI E P G + + +V +P Y +
Sbjct: 21 NISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIP-YLRRK 79
Query: 497 -----QAEALDLDKTVLETVAEAAE-------DW--RIDDIKGLLGRCNFKADMLDRKVS 542
Q L D+ V E VA A E + R+ L+G + + +
Sbjct: 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRAL----PA 135
Query: 543 LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP-SKEMLE--EAISEYKGTVITVSHD 599
LSGGE+ R+A + +V T+L+ DEPT +LD + E++ + I++ TV+ +H
Sbjct: 136 ELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHA 195
Query: 600 RYFVKQIVNRVVEVK 614
+ V +RV+ ++
Sbjct: 196 KELVDTTRHRVIALE 210
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 2e-17
Identities = 57/216 (26%), Positives = 93/216 (43%), Gaps = 28/216 (12%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR--GGEVLL 483
IK+L ED+ + NLT+++GE AI+GPNG GKSTL K I G G +L
Sbjct: 2 KIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILF 61
Query: 484 GEHNVLPNYFE-----------QNQAE-----ALDLDKTVLETVAEAAEDWRID------ 521
++L + Q E L+ ++ L A + +D
Sbjct: 62 KGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLK 121
Query: 522 DIKGLLGRCNFKADMLDRKVSL-LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 580
+K L + L+R V+ SGGEK R + + L +LDE + LDI + +
Sbjct: 122 LLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALK 181
Query: 581 MLEEAISEYKG---TVITVSHDRYFVKQIVNRVVEV 613
++ E I+ + + + ++H + + I V V
Sbjct: 182 IVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHV 217
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 2e-17
Identities = 60/215 (27%), Positives = 102/215 (47%), Gaps = 20/215 (9%)
Query: 422 RSVVTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
++ +++ F Y D + T+ GE A++GP+G GKST+ L+ L +P G
Sbjct: 476 EGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTG 535
Query: 479 GEVLLG-------EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCN 531
G+VLL +H+ L E + +V E +A D ++I N
Sbjct: 536 GQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAAN 595
Query: 532 ---FKADM-------LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM 581
F + + K S LSGG+K R+A + +V+ +L+LDE T+ LD +++
Sbjct: 596 AHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQL 655
Query: 582 LEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGS 616
L+E+ S TV+ ++H V++ +V KGS
Sbjct: 656 LQESRSRASRTVLLIAHRLSTVERADQILVLKKGS 690
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 3e-17
Identities = 67/270 (24%), Positives = 107/270 (39%), Gaps = 56/270 (20%)
Query: 60 AKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSY-KGVTVLKDVTW 118
+A +D S + + A+ + LEN+S Y G L D+
Sbjct: 287 GEAAADKLFTLLES----PVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNL 342
Query: 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG----------NVIKAKSNMKIAFLSQ 168
+K G+ LVG +GAGK+T L ++ G P G ++ +I+++SQ
Sbjct: 343 TIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQ 402
Query: 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQ 228
+ T+RE + A E + AL+ A LL+
Sbjct: 403 N-PYLFAGTIRENILLA-----RPDASDEEIIAALDQA--------GLLEFVPKPDG--- 445
Query: 229 AVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM-RMSLGKILLQDPDLLLLDEPT 287
LDT +G + G L SG Q R++L + LL LLLLDEPT
Sbjct: 446 ---LDT----------VIG---EGGAGL-----SGGQAQRLALARALLSPASLLLLDEPT 484
Query: 288 NHLDLDTIEWLEGYLGK--QDVPMVIISHD 315
HLD +T + + L + + +++I+H
Sbjct: 485 AHLDAETEQIILQALQELAKQKTVLVITHR 514
|
Length = 559 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 3e-17
Identities = 59/254 (23%), Positives = 107/254 (42%), Gaps = 61/254 (24%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
++ N++K+Y G L + + GE V LVG +GAGK+T L++I +E P SG +
Sbjct: 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV 60
Query: 157 AKSNM-------------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLER-VQKA 202
++ KI + Q+F + R V E A +E+ G R ++K
Sbjct: 61 NGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFA----LEVTGVPPREIRKR 116
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262
+ +A++ + L + L A S
Sbjct: 117 VPAALELVGLSHKH-------------------------------------RALPAELSG 139
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAF 318
G Q R+++ + ++ P +L+ DEPT +LD DT + L+ + K +V+ +H +
Sbjct: 140 GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKK-INKAGTTVVVATHAKEL 198
Query: 319 LDQLCTKIVETEMG 332
+D +++ E G
Sbjct: 199 VDTTRHRVIALERG 212
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 80.2 bits (199), Expect = 4e-17
Identities = 47/200 (23%), Positives = 80/200 (40%), Gaps = 52/200 (26%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI--- 155
++EN++ Y +L V+ V +GE V L+G NGAGKTT L+ I G P SG++
Sbjct: 2 EVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDG 61
Query: 156 --------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
++ I ++ + + TV E + A + + + LE
Sbjct: 62 RDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLG-----AYARRRAKRKARLE--- 113
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
R+ + F L+ + +L + S G Q
Sbjct: 114 -------RVYELFPRLKERR--------------------------KQLAGTLSGGEQQM 140
Query: 268 MSLGKILLQDPDLLLLDEPT 287
+++ + L+ P LLLLDEP+
Sbjct: 141 LAIARALMSRPKLLLLDEPS 160
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 4e-17
Identities = 60/205 (29%), Positives = 94/205 (45%), Gaps = 54/205 (26%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ + + Y +R + N+ +L I G+ A++G +GCGKSTLL+L+ GLE P GE+L G
Sbjct: 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAG 72
Query: 485 EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWR--------------IDDIKGLLGRC 530
+AEA ED R ID++ GL +
Sbjct: 73 T-----------------------APLAEAREDTRLMFQDARLLPWKKVIDNV-GLGLKG 108
Query: 531 NFKADMLD--RKVSL----------LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD--- 575
++ L V L LSGG+K R+A + ++ LL+LDEP LD
Sbjct: 109 QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALT 168
Query: 576 -IPSKEMLEEAISEYKGTVITVSHD 599
I ++++E ++ TV+ V+HD
Sbjct: 169 RIEMQDLIESLWQQHGFTVLLVTHD 193
|
Length = 257 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 4e-17
Identities = 56/188 (29%), Positives = 95/188 (50%), Gaps = 13/188 (6%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
S+V+++N+ + R + + +L ++ G+ ++GPNG GKSTL+++++GL P G V+
Sbjct: 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEG-VI 61
Query: 483 LGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAE---DWRIDDIKGLLGRCNFKADMLDR 539
+ Y Q L LD T+ TV + +DI L R ++D
Sbjct: 62 KRNGKLRIGYVPQK----LYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQ-AGHLIDA 116
Query: 540 KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGT----VIT 595
+ LSGGE R+ + ++ LLVLDEPT +D+ + L + I + + V+
Sbjct: 117 PMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLM 176
Query: 596 VSHDRYFV 603
VSHD + V
Sbjct: 177 VSHDLHLV 184
|
Length = 251 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 4e-17
Identities = 58/202 (28%), Positives = 93/202 (46%), Gaps = 36/202 (17%)
Query: 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+ +N+ F Y+ R + + TI G+K AI+GP+G GKST+L+L+ G +L+
Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60
Query: 484 GEH---NVLPNYFEQN-----QAEALDLDKTVL------------ETVAEAAEDWRIDD- 522
V + + Q L + T+ E V EAA+ +I D
Sbjct: 61 DGQDIREVTLDSLRRAIGVVPQDTVL-FNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDK 119
Query: 523 IKGLLGRCNFKADMLDRKVS----LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 578
I D D V LSGGEK R+A + ++K +L+LDE T+ LD +
Sbjct: 120 IMRF-------PDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHT 172
Query: 579 KEMLEEAISE-YKG-TVITVSH 598
+ ++ A+ + KG T I ++H
Sbjct: 173 EREIQAALRDVSKGRTTIVIAH 194
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 5e-17
Identities = 63/211 (29%), Positives = 101/211 (47%), Gaps = 29/211 (13%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++N+ + D + + +L I GE A++GP+G GK+TLL+LI GLE+P G +L G
Sbjct: 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFG 62
Query: 485 EHNVLPNYFEQN------QAEALDLDKTVLETVA-------------EAAEDWRIDDIKG 525
+ ++ Q AL TV + VA EA ++ ++
Sbjct: 63 GEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLK 122
Query: 526 LLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLDEPTNHLDIP-SKEM-- 581
L+ DR + LSGG++ R+A + + V+P LL LDEP LD KE+
Sbjct: 123 LVQLDWLA----DRYPAQLSGGQRQRVALARALAVEPKVLL-LDEPFGALDAKVRKELRR 177
Query: 582 -LEEAISEYKGTVITVSHDRYFVKQIVNRVV 611
L E T + V+HD+ ++ +RVV
Sbjct: 178 WLRRLHDELHVTTVFVTHDQEEALEVADRVV 208
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 5e-17
Identities = 62/245 (25%), Positives = 103/245 (42%), Gaps = 59/245 (24%)
Query: 65 DVESLFSSSADEFENKKYSNKQSNTGASSISS--------GVKLENISKSYKGVTVLKDV 116
+ + A ++ + + +S + L +SKSY V+ +
Sbjct: 1 LLTRAVAEEAPRRLELSPIERKHQGISEAKASIPGSMSTVAIDLAGVSKSYGDKAVVNGL 60
Query: 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI--------KAK-SNMKIAFLS 167
++ V GE GL+G NGAGK+T R+I G PD+G + +A+ + +I +
Sbjct: 61 SFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVP 120
Query: 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQ-KALESAVDDMDLMGRLLDEFDLLQRK 226
Q + + TVRE + + G+ + + +E+ + L EF L+ K
Sbjct: 121 QFDNLDLEFTVRENLL--------VFGRYFGMSTREIEAVIPS-------LLEFARLESK 165
Query: 227 AQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEP 286
A DA+VS L S G + R++L + L+ DP LL+LDEP
Sbjct: 166 A--------DARVSDL------------------SGGMKRRLTLARALINDPQLLILDEP 199
Query: 287 TNHLD 291
T LD
Sbjct: 200 TTGLD 204
|
Length = 340 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 6e-17
Identities = 61/186 (32%), Positives = 88/186 (47%), Gaps = 43/186 (23%)
Query: 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL--GEHNVLP--------- 490
R +LT+ERGE+ AI+GP+G GKSTLL LI G P G + L +H P
Sbjct: 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML 76
Query: 491 ----NYF-----EQNQAEALD----LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML 537
N F QN L+ L+ E + A I+ D+L
Sbjct: 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIE-------------DLL 123
Query: 538 DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS--KEML---EEAISEYKGT 592
R LSGG++ R+A + +V+ +L+LDEP + LD P+ +EML + E + T
Sbjct: 124 ARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALD-PALRQEMLTLVSQVCQERQLT 182
Query: 593 VITVSH 598
++ VSH
Sbjct: 183 LLMVSH 188
|
Length = 232 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 6e-17
Identities = 58/219 (26%), Positives = 100/219 (45%), Gaps = 51/219 (23%)
Query: 415 PERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474
++ S +V ++ + ++ + + + +LTI GE ++GP+GCGK+T+L+LI G E
Sbjct: 5 NKQPSSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE 64
Query: 475 KPRGGEVLL-GE------------HNVLPNY--------FEQNQAEALDLDKT----VLE 509
P G ++L G+ + V +Y FE N A L + KT +
Sbjct: 65 TPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFE-NVAFGLRMQKTPAAEITP 123
Query: 510 TVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569
V EA +++ + RK LSGG++ R+A + +V +L+LDE
Sbjct: 124 RVMEALRMVQLE-------------EFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDE 170
Query: 570 PTNHLDIP-SKEMLEEAISEYKG-------TVITVSHDR 600
+ LD K+M +E K T + V+HD+
Sbjct: 171 SLSALDYKLRKQMQ----NELKALQRKLGITFVFVTHDQ 205
|
Length = 375 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 6e-17
Identities = 55/204 (26%), Positives = 87/204 (42%), Gaps = 33/204 (16%)
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL------------LGEHN 487
+LT+ GE A+ GP+G GKSTLLK + P G +L
Sbjct: 24 LKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPRE 83
Query: 488 VLP------NYFEQNQAEALDL--DKTVLETVAEAAEDWRIDD------IKGLLGRCNFK 533
VL Y Q L + + LE VAE + + + LL R N
Sbjct: 84 VLEVRRKTIGYVSQ----FLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIP 139
Query: 534 ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG-- 591
+ + SGGE+ R+ + + +L+LDEPT LD +++++ E I+E K
Sbjct: 140 ERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARG 199
Query: 592 -TVITVSHDRYFVKQIVNRVVEVK 614
+I + HD + + +RV++V
Sbjct: 200 AALIGIFHDEEVRELVADRVMDVT 223
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 77.9 bits (193), Expect = 7e-17
Identities = 24/57 (42%), Positives = 39/57 (68%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++L I+K + GV L V+ V++GE L+G NGAGK+T ++I++G +PDSG +
Sbjct: 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 7e-17
Identities = 67/241 (27%), Positives = 116/241 (48%), Gaps = 36/241 (14%)
Query: 384 RASSAEKKL-ERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE---DRLL 439
RA+ A ++L E LQ E I+ P K + + P RG + + + F Y D+
Sbjct: 303 RAAGAAERLIELLQAEPDIKAPAHPKTLPV--PLRGE-----IEFEQVNFAYPARPDQPA 355
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---PNYFEQN 496
+ NLT+ GE A++GP+G GKSTL +L++ P+ G +LL ++ P
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR 415
Query: 497 QA-----------EALD------LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDR 539
A ++ D T E V AA + L + + +R
Sbjct: 416 MALVPQDPVLFAASVMENIRYGRPDATD-EEVEAAARAAHAHEFISALPE-GYDTYLGER 473
Query: 540 KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE-YKG-TVITVS 597
V+ LSGG++ R+A + ++K + +L+LDE T+ LD S++++++A+ KG T + ++
Sbjct: 474 GVT-LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIA 532
Query: 598 H 598
H
Sbjct: 533 H 533
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 7e-17
Identities = 114/570 (20%), Positives = 228/570 (40%), Gaps = 130/570 (22%)
Query: 99 KLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKT----TQLRIIAGQEEPD 150
+ N+S ++ V +K ++++++ GE + LVG +G+GK+ + L ++ P
Sbjct: 8 SIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL-----PS 62
Query: 151 SGNVIKAKSNMKIAFLSQEFEVSMSRT---VREEFMSA-FKEEMEIAGKLERVQKALESA 206
+ S I F ++ + R VR + F+E M L + K L
Sbjct: 63 PAAAHPSGS---ILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEV 119
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASF----SS 262
+ R + ++ A+ +L+ +G + ++ + ++ S
Sbjct: 120 L-----------------RLHRGLSRAAARARALELLELVGI--PEPEKRLDAYPHELSG 160
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHD 315
G + R+ + L +PDLL+ DEPT LD LD ++ L+ LG + ++ I+HD
Sbjct: 161 GQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELG---MAILFITHD 217
Query: 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINR 375
+ + ++ YV++ +E+ + T+ L+
Sbjct: 218 LGIVRKFADRV-----------------YVMQHGEIVETGTTETLFAAPQHPYTRKLLAA 260
Query: 376 LGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERG----RSGRSVVTIKNLE 431
+G A LE + +++ FP +G R+ + + +
Sbjct: 261 EPSGDPPPLPEDAPVLLEV-------------EDLRVWFPIKGGFLRRTVDHLRAVDGI- 306
Query: 432 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG-----GEVLLG-- 484
+LT+ RG+ ++G +G GKSTL ++ L +G G+ + G
Sbjct: 307 ------------SLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLS 354
Query: 485 EHNVLPNYFE-----QNQAEALDLDKTVLETVAE----------AAEDWRIDDIKGLLGR 529
+ P Q+ +L TV + + E AAE R + L
Sbjct: 355 RKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAE--RDQRVIEALEE 412
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNHLDIPSK----EMLEE 584
+R SGG++ R+A + ++ KP L++LDEPT+ LD + ++L +
Sbjct: 413 VGLDPATRNRYPHEFSGGQRQRIAIARALILKPE-LILLDEPTSALDRSVQAQVLDLLRD 471
Query: 585 AISEYKGTVITVSHDRYFVKQIVNRVVEVK 614
++ + + +SHD V+ + +RV+ ++
Sbjct: 472 LQQKHGLSYLFISHDLAVVRALCHRVIVMR 501
|
Length = 534 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 8e-17
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 12/95 (12%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
++L+N+SK Y TVL DV+ ++ GE V L+G +G+GK+T LR IAG EEPDSG++
Sbjct: 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILID 60
Query: 155 ---------IKAKSNMKIAFLSQEFEVSMSRTVRE 180
+I + Q+F + TV E
Sbjct: 61 GEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLE 95
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 9e-17
Identities = 65/245 (26%), Positives = 108/245 (44%), Gaps = 52/245 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++L ++KS+ G TVLK V +V++GE + ++G +G+GK+T LR+I G PDSG V
Sbjct: 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV--- 57
Query: 158 KSNMKIAFLSQEFEVSMSRT----VREEFMSAFKEEMEIAGKLERVQKALESAVDDMD-- 211
+ E +S +R F+ AL D +
Sbjct: 58 -------LIDGEDISGLSEAELYRLRRRMGMLFQ------------SGAL---FDSLTVF 95
Query: 212 --LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+ L + L + + + + L+ L+A +G + D A S G + R++
Sbjct: 96 ENVAFPLREHTRLSEEEIREIVLEKLEA--------VGLRGAE-DLYPAELSGGMKKRVA 146
Query: 270 LGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAFLDQL 322
L + L DP+LLL DEPT LD D I L+ LG + ++++HD +
Sbjct: 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELG---LTSIMVTHDLDTAFAI 203
Query: 323 CTKIV 327
+I
Sbjct: 204 ADRIA 208
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 9e-17
Identities = 59/227 (25%), Positives = 97/227 (42%), Gaps = 37/227 (16%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG-----QEEPDSG 152
++L +++ Y LKD++ ++ KGE L+G +G GK+T LR++ PD G
Sbjct: 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEG 60
Query: 153 NVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDL 212
V+ + + + + R V F I + + L
Sbjct: 61 EVLLDGKD---IYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLR----------L 107
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA-SFSSGWQMRMSLG 271
G L E LD +V + + + + DRL A S G Q R+ L
Sbjct: 108 HGIKLKEE--------------LDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLA 153
Query: 272 KILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQDVPMVIISHD 315
+ L +P++LLLDEPT+ LD IE L L K++ +VI++H+
Sbjct: 154 RALANEPEVLLLDEPTSALDPISTAKIEELIAEL-KKEYTIVIVTHN 199
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 9e-17
Identities = 59/211 (27%), Positives = 93/211 (44%), Gaps = 52/211 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG----- 152
++LEN+SK Y G L V+ ++K+GE L+G +G GKTT LR+IAG E P SG
Sbjct: 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLD 60
Query: 153 -----NVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
N+ K + F Q + + TV E AF ++ K E ++ E+
Sbjct: 61 GKDITNLPPHKRPVNTVF--QNYALFPHLTVFENI--AFGLRLKKLPKAEIKERVAEA-- 114
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+DL+ L+ + +R + S G Q R
Sbjct: 115 --LDLVQ--LEGY--------------------------------ANRKPSQLSGGQQQR 138
Query: 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWL 298
+++ + L+ +P +LLLDEP LDL + +
Sbjct: 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDM 169
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 1e-16
Identities = 60/219 (27%), Positives = 99/219 (45%), Gaps = 39/219 (17%)
Query: 424 VVTIKNLEFGYEDRL-----LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
++ ++N+ + + +L I +GE IIG +G GKSTLL+LI LE+P
Sbjct: 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS 60
Query: 479 GEVLLGEHNV--LPNY----FEQN-----QAEALDLDKTVLETVAEAAEDWRID------ 521
G V + ++ L Q Q L +TV E VA E +
Sbjct: 61 GSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQ 120
Query: 522 ------DIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575
++ GL +D DR + LSGG+K R+A + + +L+ DE T+ LD
Sbjct: 121 RVAELLELVGL-------SDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALD 173
Query: 576 IPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRV 610
+ E+L++ E T++ ++H+ VK+I +RV
Sbjct: 174 PETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRV 212
|
Length = 339 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 1e-16
Identities = 68/271 (25%), Positives = 109/271 (40%), Gaps = 54/271 (19%)
Query: 380 ANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-RL 438
A R + + LE Q + + + + R + + +T++NL D +
Sbjct: 354 ATLLRLAEFRQALEAAQMDTE-----KPARTGRRI-DFDDNADHGITLENLSLRTPDGQT 407
Query: 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--------EKPRGGEVLLGEHNVLP 490
L + N + GE+ I G +G GK++LL+ + GL P +L LP
Sbjct: 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLF-----LP 462
Query: 491 N--YFEQ----------NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLD 538
Y Q N A D ++ + + LG + D D
Sbjct: 463 QRPYLPQGTLREALCYPNAAPDFS-DAELVAVLHKVG-----------LGDLAERLDEED 510
Query: 539 RKVSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNHLDIPSK-EMLEEAISEYKG-TVIT 595
R +LSGGE+ RLAF + ++ KP + LDE T+ LD ++ + + E TVI+
Sbjct: 511 RWDRVLSGGEQQRLAFARLLLHKPK-WVFLDEATSALDEETEDRLYQLLKEELPDATVIS 569
Query: 596 VSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626
V H R + +R +E L D AG N
Sbjct: 570 VGH-RPTLWNFHSRQLE-----LLDDAGGQN 594
|
Length = 604 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 1e-16
Identities = 62/228 (27%), Positives = 105/228 (46%), Gaps = 40/228 (17%)
Query: 107 YKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA---KSNMKI 163
Y+ V LK +++ ++KGE VG +G NGAGKTT L+I++G +P SG V A +
Sbjct: 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRK 90
Query: 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLL 223
FL + V +T ++ L +D L+ + +DL
Sbjct: 91 KFLRRIGVVFGQKT-------------QLWWDL--------PVIDSFYLLAAI---YDLP 126
Query: 224 QRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLL 283
+ + LD L +++ L L D V S G +MR + LL +P++L L
Sbjct: 127 PARFKK-RLDEL-SELLDLEELL-------DTPVRQLSLGQRMRAEIAAALLHEPEILFL 177
Query: 284 DEPTNHLDLDTIE----WLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
DEPT LD+ E +L+ Y ++ +++ SH ++ L +++
Sbjct: 178 DEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVL 225
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 1e-16
Identities = 63/250 (25%), Positives = 106/250 (42%), Gaps = 61/250 (24%)
Query: 397 EEEQIEKPFQRKQMKIRFPERGRSG-----RSVVTIKNLEFGYEDRLLFNRANLTIERGE 451
E + K ++ + +S R V +K + + TIE+GE
Sbjct: 2 EVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGI-------------SFTIEKGE 48
Query: 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLGEHNVLPNYFEQN------------QA 498
IGPNG GK+T LK++ GL +P GEV + G +P +++ Q
Sbjct: 49 IVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGL---VP--WKRRKKFLRRIGVVFGQK 103
Query: 499 EALDLDKTVLETVAEAAEDWRIDD--IKGLLGRCNFKADMLD---------RKVSLLSGG 547
L D V+++ A + + K L +++LD R++SL G
Sbjct: 104 TQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDEL---SELLDLEELLDTPVRQLSL---G 157
Query: 548 E--KARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE----MLEEAISEYKGTVITVSHDRY 601
+ +A +A + +P +L LDEPT LD+ ++E L+E E TV+ SH
Sbjct: 158 QRMRAEIA-AALLHEPE-ILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK 215
Query: 602 FVKQIVNRVV 611
++ + RV+
Sbjct: 216 DIEALARRVL 225
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 1e-16
Identities = 65/222 (29%), Positives = 100/222 (45%), Gaps = 37/222 (16%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
++N+ F R L + +LT G+ T +IG NG GKSTLLK++ + P GE+LL
Sbjct: 13 ALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDA 72
Query: 486 HNVLP----------NYFEQN--QAEALDLDKTVLETVAEAAEDW-------------RI 520
+ Y Q AE + TV E VA W ++
Sbjct: 73 QPLESWSSKAFARKVAYLPQQLPAAEGM----TVRELVAIGRYPWHGALGRFGAADREKV 128
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK- 579
++ L+G R V LSGGE+ R + + S L+LDEPT+ LDI +
Sbjct: 129 EEAISLVGLKPLA----HRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQV 184
Query: 580 EMLE--EAISEYKG-TVITVSHDRYFVKQIVNRVVEVKGSNL 618
++L +S+ +G TVI V HD + + +V ++G +
Sbjct: 185 DVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEM 226
|
Length = 265 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 1e-16
Identities = 65/216 (30%), Positives = 101/216 (46%), Gaps = 24/216 (11%)
Query: 411 KIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
+ R P ++V +L D L I GE I+GPNG GK+T KL+
Sbjct: 327 EERPPRDESERETLVEYPDLTKKLGDFSLEVEGG-EIYEGEVIGIVGPNGIGKTTFAKLL 385
Query: 471 MGLEKPRGGEVLLGEH-NVLPNYFEQNQAEALDLDKTVLETVAEAAED-----WRIDDIK 524
G+ KP GEV + P Y + + D TV + + +D ++ + IK
Sbjct: 386 AGVLKPDEGEVDPELKISYKPQYIKPDY------DGTVEDLLRSITDDLGSSYYKSEIIK 439
Query: 525 GL-LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583
L L R +LD+ V LSGGE R+A + + + L +LDEP+ HLD+ + +
Sbjct: 440 PLQLER------LLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVA 493
Query: 584 EAI----SEYKGTVITVSHDRYFVKQIVNRVVEVKG 615
+AI E + T + V HD Y + I +R++ +G
Sbjct: 494 KAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG 529
|
Length = 590 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 2e-16
Identities = 28/57 (49%), Positives = 39/57 (68%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++EN+S Y G T L +V+ +K GE V LVG NG+GK+T LR IAG +P SG ++
Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 2e-16
Identities = 67/252 (26%), Positives = 112/252 (44%), Gaps = 57/252 (22%)
Query: 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
++ N+SK+Y GV L DV+ ++KGE + L G +GAGKTT L+++ G P G V
Sbjct: 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRI 61
Query: 157 AKSNM------KIAFLS-------QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL 203
A ++ ++ L Q+F + RTV E A +E+ GK ER +
Sbjct: 62 AGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENV--ALP--LEVRGKKER---EI 114
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
+ V G L + L + PE S G
Sbjct: 115 QRRV------GAALRQVGLEHKA--------------DAFPE-------------QLSGG 141
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLD 320
Q R+++ + ++ P LLL DEPT +LD D E + L K+ +++ +HD + +D
Sbjct: 142 EQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVD 201
Query: 321 QLCTKIVETEMG 332
++ +++ + G
Sbjct: 202 RVAHRVIILDDG 213
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.7 bits (195), Expect = 2e-16
Identities = 51/202 (25%), Positives = 88/202 (43%), Gaps = 55/202 (27%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI--- 155
++EN+S Y + L+ V+ EV++GE V L+G NGAGKTT L+ I G P SG +I
Sbjct: 5 EVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDG 64
Query: 156 ----------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
+A+ + IA++ + + TV E + R ++A E
Sbjct: 65 EDITGLPPHERAR--LGIAYVPEGRRIFPRLTVEENL--------LLGAYARRDKEAQER 114
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
++++ ++L P L + ++ + S G Q
Sbjct: 115 DLEEV---------YELF--------------------PRL---KERRNQRAGTLSGGEQ 142
Query: 266 MRMSLGKILLQDPDLLLLDEPT 287
+++ + L+ P LLLLDEP+
Sbjct: 143 QMLAIARALMSRPKLLLLDEPS 164
|
Length = 237 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 2e-16
Identities = 62/226 (27%), Positives = 100/226 (44%), Gaps = 56/226 (24%)
Query: 412 IRFPERG--RSGRSVVTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLL 467
+ FP + + +T+ N+ F Y D+ + +L I+ GEK A++G GCGKSTLL
Sbjct: 324 VTFPTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLL 383
Query: 468 KLIMGLEKPRGGEVLLGEHNVLPNYFEQN--------------------------QAEAL 501
+L+ P+ GE+LL + +Y E A
Sbjct: 384 QLLTRAWDPQQGEILLNGQP-IADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNAS 442
Query: 502 D------LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFC 555
D L + LE + E +D ++ G GR LSGGE+ RL
Sbjct: 443 DEALIEVLQQVGLEKLLE--DDKGLNAWLGEGGR-------------QLSGGEQRRLGIA 487
Query: 556 KFMVKPSTLLVLDEPTNHLDIPS-KEMLE--EAISEYKGTVITVSH 598
+ ++ + LL+LDEPT LD + +++LE ++ K TV+ ++H
Sbjct: 488 RALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNK-TVLMITH 532
|
Length = 574 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 2e-16
Identities = 62/196 (31%), Positives = 99/196 (50%), Gaps = 27/196 (13%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
VT++N+ Y D ++ NL I GE +GP+GCGKSTLL++I GLE G++ +G
Sbjct: 4 VTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIG 63
Query: 485 EHNVLPNYFEQN--------QAEALDLDKTVLETV--------AEAAE-DWRIDDIKGLL 527
E + N Q+ AL +V E + A+ E + R++ + +L
Sbjct: 64 EKRM--NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVL 121
Query: 528 GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAIS 587
A +LDRK LSGG++ R+A + +V ++ +LDEP ++LD + + IS
Sbjct: 122 QL----AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEIS 177
Query: 588 ----EYKGTVITVSHD 599
T+I V+HD
Sbjct: 178 RLHKRLGRTMIYVTHD 193
|
Length = 369 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 3e-16
Identities = 61/262 (23%), Positives = 112/262 (42%), Gaps = 56/262 (21%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++L N+S +Y G LK+ + +GEKV ++G +G+GK+T L+++AG +P G++
Sbjct: 337 LELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSIT 396
Query: 156 KAKSNMK----------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
+ I+ L+Q + S T+R+ A + + E + AL+
Sbjct: 397 LNGVEIASLDEQALRETISVLTQRVHL-FSGTLRDNLRLANPDASD-----EELWAALQQ 450
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
L L D L+ + + G RL S G +
Sbjct: 451 V----GLEKLLESA------------PDGLNTWLG----------EGGRRL----SGGER 480
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQ 321
R++L + LL D L LLDEPT LD + L + + +++++H L++
Sbjct: 481 RRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLMVTHRLRGLER 538
Query: 322 LCTKIVETEMGVSRTYEGNYSQ 343
+I+ + G EG +++
Sbjct: 539 -MDRIIVLDNG-KIIEEGTHAE 558
|
Length = 573 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 3e-16
Identities = 48/187 (25%), Positives = 89/187 (47%), Gaps = 25/187 (13%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQ------- 497
T++ GE T ++GPNG GK+T L+++ GL +P G + +V+ E +
Sbjct: 26 FTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSD 85
Query: 498 AEALDLDKTVLETVA----------EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
+ L T E + + R++++ LG ++LDR+V S G
Sbjct: 86 STGLYDRLTARENLEYFAGLYGLKGDELTA-RLEELADRLG----MEELLDRRVGGFSTG 140
Query: 548 EKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHDRYFVK 604
+ ++A + +V +L+LDEPT LD+ + L E I + + ++ +H V+
Sbjct: 141 MRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVE 200
Query: 605 QIVNRVV 611
++ +RVV
Sbjct: 201 RLCDRVV 207
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 3e-16
Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 23/181 (12%)
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDK 505
I GE I+GPNG GK+T +KL+ G+ KP G + + P Y D D
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISP------DYDG 416
Query: 506 TVLETVAEAAED------WRIDDIKGL-LGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558
TV + + A ++ + +K L L D+L+R V LSGGE R+A +
Sbjct: 417 TVEDLLRSAIRSAFGSSYFKTEIVKPLNLE------DLLERPVDELSGGELQRVAIAAAL 470
Query: 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAIS----EYKGTVITVSHDRYFVKQIVNRVVEVK 614
+ + L +LDEP+ +LD+ + ++ + I + T + V HD Y + + +R++ +
Sbjct: 471 SREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530
Query: 615 G 615
G
Sbjct: 531 G 531
|
Length = 591 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 3e-16
Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 29/196 (14%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
++N+ + D + N + ++ GE I GP+GCGKSTLLK++ L P G +L
Sbjct: 10 LQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGE 69
Query: 487 NVL---PNYFEQN-----QAEALDLDKTVLETVAEAAEDWRI-------DDIKGLLGRCN 531
++ P + Q Q L D TV + + W+I L R
Sbjct: 70 DISTLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFP---WQIRNQQPDPAIFLDDLERFA 125
Query: 532 FKADMLDRKVSLLSGGEKARLAFCK---FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE 588
+L + ++ LSGGEK R++ + FM K +L+LDE T+ LD +K + E I
Sbjct: 126 LPDTILTKNIAELSGGEKQRISLIRNLQFMPK---VLLLDEITSALDESNKHNVNEIIHR 182
Query: 589 Y----KGTVITVSHDR 600
Y V+ V+HD+
Sbjct: 183 YVREQNIAVLWVTHDK 198
|
Length = 225 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 3e-16
Identities = 57/205 (27%), Positives = 88/205 (42%), Gaps = 55/205 (26%)
Query: 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--------EK 475
+ ++NL D R+L + I+ G++ I GP+G GKS+L + + GL
Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60
Query: 476 PRGGEVLLGEHNVLPN--YFEQ-NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNF 532
P G ++L LP Y E L W DD+
Sbjct: 61 PEGEDLLF-----LPQRPYLPLGTLREQL-------------IYPW--DDV--------- 91
Query: 533 KADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG 591
LSGGE+ RLAF + + KP + LDE T+ LD S++ L + + E
Sbjct: 92 -----------LSGGEQQRLAFARLLLHKP-KFVFLDEATSALDEESEDRLYQLLKELGI 139
Query: 592 TVITVSHDRYFVKQIVNRVVEVKGS 616
TVI+V H R + + +RV+++ G
Sbjct: 140 TVISVGH-RPSLWKFHDRVLDLDGE 163
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 4e-16
Identities = 64/252 (25%), Positives = 105/252 (41%), Gaps = 62/252 (24%)
Query: 95 SSGVKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+ ++ +S +Y G L+ V++ V GE+V LVG +GAGK+T L ++ G +P G+
Sbjct: 319 APSLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGS 378
Query: 154 V---------IKAKSNMK-IAFLSQE---FEVSMSRTVREEFMSAFKEEMEIAGKLERVQ 200
+ A S IA++ Q F ++ E ++
Sbjct: 379 IAVNGVPLADADADSWRDQIAWVPQHPFLFAGTI---------------------AENIR 417
Query: 201 KALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK-LMPELGFTADDGDRLVAS 259
A A D ++ + LD A + + L +G + G L
Sbjct: 418 LARPDASDAE------------IREALERAGLDEFVAALPQGLDTPIG---EGGAGL--- 459
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHD 315
S G R++L + L+D LLLLDEPT HLD +T +E L + V ++++H
Sbjct: 460 -SGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTV--LLVTHR 516
Query: 316 RAFLDQLCTKIV 327
A L +IV
Sbjct: 517 LALA-ALADRIV 527
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 4e-16
Identities = 62/211 (29%), Positives = 95/211 (45%), Gaps = 47/211 (22%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MG--LEKPR-G 478
+ +++L Y D+ NL I + + TA+IGP+GCGKSTLL+ + M + R
Sbjct: 7 AIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVE 66
Query: 479 GEVLLGEHNVL-------------------PNYFEQNQAEALDLDKTVLETVAEAAE--D 517
GEVLL N+ PN F ++ + VA
Sbjct: 67 GEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPF----------PMSIYDNVAYGLRLHG 116
Query: 518 WRIDDIKGLLGRCNFKA-------DMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLDE 569
+ ++ ++ KA D L + LSGG++ RL + + VKP LL +DE
Sbjct: 117 IKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLL-MDE 175
Query: 570 PTNHLDIPSKEMLEEAISEYKG--TVITVSH 598
PT+ LD S +EE I+E K T++ V+H
Sbjct: 176 PTSALDPISTLKIEELITELKKKYTIVIVTH 206
|
Length = 253 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 4e-16
Identities = 68/226 (30%), Positives = 100/226 (44%), Gaps = 52/226 (23%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MG--LEKPR-G 478
+ I+NL Y ++ NL I + + TA+IGP+GCGKSTLL+ + M + R
Sbjct: 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIE 60
Query: 479 GEVLLGEHNVL-------------------PNYFE----QNQAEALDL----DKTVLETV 511
G+VL ++ PN F N A L DK L+ +
Sbjct: 61 GKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEI 120
Query: 512 AEA----AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLV 566
E A W D++K D L LSGG++ RL + + V+P LL
Sbjct: 121 VEESLKKAALW--DEVK----------DRLHDSALGLSGGQQQRLCIARALAVEPEVLL- 167
Query: 567 LDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFVKQIVNRV 610
LDEPT+ LD + +EE I E K T++ V+H+ +I +R
Sbjct: 168 LDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRT 213
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 4e-16
Identities = 58/177 (32%), Positives = 91/177 (51%), Gaps = 28/177 (15%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN----------VLPNY- 492
NLTI++GE ++IG +GCGKSTLL LI GL +P G V+L V NY
Sbjct: 5 NLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYS 64
Query: 493 ------FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSG 546
+N A A+D VL ++++ +++ L+G + D++ LSG
Sbjct: 65 LLPWLTVRENIALAVD---RVLPDLSKSERRAIVEEHIALVGL----TEAADKRPGQLSG 117
Query: 547 GEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI----SEYKGTVITVSHD 599
G K R+A + + +L+LDEP LD ++ L+E + E++ TV+ V+HD
Sbjct: 118 GMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD 174
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 5e-16
Identities = 60/248 (24%), Positives = 106/248 (42%), Gaps = 42/248 (16%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
+ +N+SK + T + +++ V K GL+G NGAGK+T L++I G P SG
Sbjct: 2 ETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSG------ 55
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
+I F + + + E + L +A +++
Sbjct: 56 ---EIIFDGHPWTRKDLHKI-----GSLIESPPLYENL--------TARENL-------- 91
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
K L D+++ +++ + T + G + FS G + R+ + LL P
Sbjct: 92 -------KVHTTLLGLPDSRIDEVLNIVDLT-NTGKKKAKQFSLGMKQRLGIAIALLNHP 143
Query: 279 DLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335
LL+LDEPTN LD I+ L + +Q + +++ SH + + QL I GV
Sbjct: 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLG 203
Query: 336 TYEGNYSQ 343
Y+G ++
Sbjct: 204 -YQGKINK 210
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 6e-16
Identities = 67/234 (28%), Positives = 99/234 (42%), Gaps = 32/234 (13%)
Query: 413 RFPERGRSGRSVVTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKL 469
+ E+ S + +K L G + + I +GE+ IIG NG GKSTLLKL
Sbjct: 15 IYHEKSYSLKK--RLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKL 72
Query: 470 IMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETV---------AEAAEDWRI 520
I G+ KP G+V + E D + T E + D ++
Sbjct: 73 IAGIYKPTSGKVKVTGKVAPL--IELGA--GFDPELTGRENIYLRGLILGLTRKEIDEKV 128
Query: 521 DDIKGL--LGRCNFKADMLDRKVSLLSGGEKARLAF-CKFMVKPSTLLVLDEPTNHLDIP 577
D+I LG D +D+ V S G ARLAF V+P LL LDE D
Sbjct: 129 DEIIEFAELG------DFIDQPVKTYSSGMYARLAFSVATHVEPDILL-LDEVLAVGDAA 181
Query: 578 SKEMLEEAISEYK---GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQV 628
+E E ++E T++ VSHD +KQ +R + ++ ++ G +V
Sbjct: 182 FQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRME-GSPEEV 234
|
Length = 249 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.6 bits (200), Expect = 6e-16
Identities = 52/195 (26%), Positives = 87/195 (44%), Gaps = 27/195 (13%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL-GEHNVLPNYFE----- 494
+ +LT+ GE A++G NG GKSTL+K++ G+ P GE+L+ G+ + +
Sbjct: 25 DGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84
Query: 495 -----QNQAEALDLDKTVLETVA---EAAEDWRIDDIKG-------LLGRCNFKADMLDR 539
Q + +L +V E + E + + D K LL R D D
Sbjct: 85 IATVHQELSLVPNL--SVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-PDT 141
Query: 540 KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITV 596
V LS ++ + + + + +L+LDEPT L + E L + I K +I +
Sbjct: 142 LVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYI 201
Query: 597 SHDRYFVKQIVNRVV 611
SH V +I +R+
Sbjct: 202 SHRLDEVFEIADRIT 216
|
Length = 500 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 7e-16
Identities = 59/259 (22%), Positives = 115/259 (44%), Gaps = 69/259 (26%)
Query: 92 SSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP 149
+ ++ N+S +Y G L +V+ ++ GEKV ++G G+GK+T L+++ G +P
Sbjct: 458 PRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP 517
Query: 150 DSGNVIKAKSNMK----------IAFLSQE---FEVSMSRTVRE--EFMSAFKEEMEIAG 194
G+V+ +++ I ++ Q+ F T+R+ + + ++
Sbjct: 518 TEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLF----YGTLRDNIALGAPYADD----- 568
Query: 195 KLERVQKALESA-VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253
E + +A E A V + + R D D+ + G
Sbjct: 569 --EEILRAAELAGVT--EFVRRHPDGLDMQ-------------------------IGERG 599
Query: 254 DRLVASFSSGWQMRM-SLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVP 308
L SG Q + +L + LL+DP +LLLDEPT+ +D + + L+ +L +
Sbjct: 600 RSL-----SGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKT-- 652
Query: 309 MVIISHDRAFLDQLCTKIV 327
+V+++H + LD L +I+
Sbjct: 653 LVLVTHRTSLLD-LVDRII 670
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 9e-16
Identities = 58/193 (30%), Positives = 90/193 (46%), Gaps = 30/193 (15%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503
+L++++GE A++G NG GKSTL+K++ GL +P GE+ + V + +A+ L
Sbjct: 24 SLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIK----SPRDAIRL 79
Query: 504 ------------DK-TVLETVA---EAAEDWRID------DIKGLLGRCNFKADMLDRKV 541
TV E + E ++ ID IK L R D D KV
Sbjct: 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVD-PDAKV 138
Query: 542 SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK---GTVITVSH 598
+ LS GE+ R+ K + + + LL+LDEPT L + L E + T+I ++H
Sbjct: 139 ADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITH 198
Query: 599 DRYFVKQIVNRVV 611
V I +RV
Sbjct: 199 KLKEVMAIADRVT 211
|
Length = 501 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 9e-16
Identities = 59/206 (28%), Positives = 88/206 (42%), Gaps = 55/206 (26%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+ N+ K Y V+ +++ V++GE GL+G NGAGKTT LR++ G PD+G++
Sbjct: 8 IDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLC 67
Query: 156 -------KAKSNMKIAFLSQEFEVSMSRTVREE---FMSAFKEEMEIAGKLERVQKALES 205
+ ++ + Q + TVRE F F + A V L
Sbjct: 68 GEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG--LSAAAARALVPPLL-- 123
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
EF L+ KA DAKV +L S G +
Sbjct: 124 -------------EFAKLENKA--------DAKVGEL------------------SGGMK 144
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLD 291
R++L + L+ DPD+L+LDEPT LD
Sbjct: 145 RRLTLARALVNDPDVLVLDEPTTGLD 170
|
Length = 306 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 1e-15
Identities = 65/328 (19%), Positives = 125/328 (38%), Gaps = 79/328 (24%)
Query: 15 FSTLQPRFT-PFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKSIAKAQSDVESLFSSS 73
F+ L F P K R+ + +
Sbjct: 415 FNMLAGYFISPITRLSQLWTDFQQAKVALERL---------------------GDILDTP 453
Query: 74 ADEFENKKYSNKQSNTGASSISSGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGV 131
++ +K + + ++ EN+S Y VL+D++ E+ GEKV +VG
Sbjct: 454 PEQEGDKTLIHL------PKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGR 507
Query: 132 NGAGKTTQLRIIAGQEEPDSGNVIKAKSNMK----------IAFLSQEFEVSMSRTVREE 181
+G+GK+T L+++ G +P G ++ ++ + ++ Q+ S ++R E
Sbjct: 508 SGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQD-PFLFSGSIR-E 565
Query: 182 FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241
++ E E + +A + A EF + + DT
Sbjct: 566 NIALGNPEA----TDEEIIEAAQLAG---------AHEF----IENLPMGYDT------- 601
Query: 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY 301
+G A+ S G + R++L + LL P +LLLDE T+ LD +T +
Sbjct: 602 ---PVGEGG-------ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQN 651
Query: 302 LGK--QDVPMVIISHDRAFLDQLCTKIV 327
L + Q ++II+H + + + +I+
Sbjct: 652 LLQILQGRTVIIIAHRLSTI-RSADRII 678
|
Length = 709 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 1e-15
Identities = 62/216 (28%), Positives = 100/216 (46%), Gaps = 34/216 (15%)
Query: 424 VVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
++ +KN+ + D A +L++ +GE IIG +G GKSTL++ I GLE+P G
Sbjct: 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSG 60
Query: 480 EVLL-GEHNVLPNYFEQNQAEA----------LDLDKTVLETVAEAAEDW---------R 519
VL+ G L + E +A L +TV E VA E R
Sbjct: 61 SVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEER 120
Query: 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK 579
+ ++ L+G D D + LSGG+K R+ + + +L+ DE T+ LD P
Sbjct: 121 VLELLELVGL----EDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALD-PET 175
Query: 580 -----EMLEEAISEYKGTVITVSHDRYFVKQIVNRV 610
+L + E T++ ++H+ VK+I +RV
Sbjct: 176 TQSILALLRDINRELGLTIVLITHEMEVVKRICDRV 211
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 1e-15
Identities = 59/229 (25%), Positives = 103/229 (44%), Gaps = 51/229 (22%)
Query: 426 TIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
++NL Y + + +L+I GE A+IGP+G GKSTLL+ + GL +P G VL+
Sbjct: 2 EVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLID 61
Query: 485 EHNV--LPNYFEQN---------QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNF- 532
++ L + Q L +VLE V + G LGR +
Sbjct: 62 GTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENV-----------LSGRLGRRSTW 110
Query: 533 --------------------KADMLD---RKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569
+ +LD ++ LSGG++ R+A + +++ L++ DE
Sbjct: 111 RSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADE 170
Query: 570 PTNHLD-IPSKEMLE--EAISEYKG-TVITVSHDRYFVKQIVNRVVEVK 614
P LD S+++++ + I+ +G TVI H ++ +R+V +K
Sbjct: 171 PVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLK 219
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 1e-15
Identities = 52/165 (31%), Positives = 75/165 (45%), Gaps = 26/165 (15%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
+ NL Y + +L + +GE T ++G NG GK+TLLK +MGL + G + L
Sbjct: 2 EVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDG 61
Query: 486 HNV--LP---------NYFEQNQAEALDLDKTV---LETVAEA---AEDWRIDDIKGLLG 528
++ LP Y Q + L TV L T A D+I L
Sbjct: 62 EDITKLPPHERARAGIAYVPQGREIFPRL--TVEENLLTGLAALPRRSRKIPDEIYEL-- 117
Query: 529 RCNFKA--DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571
F +ML R+ LSGG++ +LA + +V LL+LDEPT
Sbjct: 118 ---FPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 2e-15
Identities = 68/243 (27%), Positives = 107/243 (44%), Gaps = 49/243 (20%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
LE +S S+ G L D++ V GE ++G NGAGKTT + +I G+ PD G+V
Sbjct: 4 YLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGG 63
Query: 155 --IKAKSNMKIAFLS-----QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ +IA Q+ V + TV E +E+A ++ A
Sbjct: 64 TDLTGLPEHQIARAGIGRKFQKPTVFENLTVF--------ENLELALPRDKSVFAS---- 111
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
L RL + ++ +++ +G AD+ DRL S G +
Sbjct: 112 ----LFFRL--------SAEEK-------DRIEEVLETIGL-ADEADRLAGLLSHGQKQW 151
Query: 268 MSLGKILLQDPDLLLLDEPTNHLDLD----TIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323
+ +G +L+QDP LLLLDEP + + T E L+ GK V V++ HD F+ +
Sbjct: 152 LEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSV--VVVEHDMEFVRSIA 209
Query: 324 TKI 326
K+
Sbjct: 210 DKV 212
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 2e-15
Identities = 56/217 (25%), Positives = 100/217 (46%), Gaps = 31/217 (14%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKAKSNMKIAFLSQE 169
+LK V VK+GE ++G NG+GK+T I G E G ++ ++
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDIL------- 71
Query: 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQA 229
E+S R AF+ +EI G L +A++ +R A+
Sbjct: 72 -ELSPDERARAGIFLAFQYPVEIPGV--TNSDFLRAAMNA--------------RRGARG 114
Query: 230 VNLDTLDAKVSKLMPELGFTADDGDRLV-ASFSSGWQMRMSLGKILLQDPDLLLLDEPTN 288
+ + + ++ + LG + +R V FS G + R + ++LL +P L +LDEP +
Sbjct: 115 ILPEFIK-ELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDS 173
Query: 289 HLDLDTIEWL-EG--YLGKQDVPMVIISHDRAFLDQL 322
LD+D ++ + EG L ++ ++II+H + LD +
Sbjct: 174 GLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYI 210
|
Length = 251 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 2e-15
Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 19/186 (10%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN--YFEQN----- 496
+ I +GE +G NG GKST LK++ GL P G+V + + + ++
Sbjct: 44 SFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVM 103
Query: 497 -QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSL------LSGGEK 549
Q L D L+++ + I D R +F ++LD + L LS G++
Sbjct: 104 GQKLQLWWDLPALDSLEVLKLIYEIPD-DEFAERLDFLTEILDLEGFLKWPVRKLSLGQR 162
Query: 550 ARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQ 605
R ++ P +L LDEPT LD+ ++ + E + EY + TV+ +H +
Sbjct: 163 MRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIAT 222
Query: 606 IVNRVV 611
+ +RV+
Sbjct: 223 LCDRVL 228
|
Length = 325 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 2e-15
Identities = 59/254 (23%), Positives = 108/254 (42%), Gaps = 52/254 (20%)
Query: 101 ENISKSYKGV---------TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151
+S Y TVL +V+ +K GE V L+G +G GK+T R++ G E P
Sbjct: 7 SGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQ 66
Query: 152 GNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD 211
GNV ++ + +++ R + AF+ ++++ Q ++ SAV+
Sbjct: 67 GNV---------SWRGE----PLAKLNRAQ-RKAFRRDIQMV-----FQDSI-SAVNPRK 106
Query: 212 LMGRLLDE----FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+ ++ E L + + A+ S+++ + D+ S G R
Sbjct: 107 TVREIIREPLRHLLSLDKAERL-------ARASEMLRAVDLDDSVLDKRPPQLSGGQLQR 159
Query: 268 MSLGKILLQDPDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323
+ L + L +P LL+LDE ++LDL I L+ + + I+HD +++ C
Sbjct: 160 VCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFC 219
Query: 324 T--------KIVET 329
+IVET
Sbjct: 220 QRVMVMDNGQIVET 233
|
Length = 268 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 3e-15
Identities = 57/212 (26%), Positives = 87/212 (41%), Gaps = 27/212 (12%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL- 483
+ + + Y L GE ++GP+G GKS+LL+++ LE PR G + +
Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62
Query: 484 GEHNVLPNYFEQNQAEALDLD-------------KTVLETVAEA-------AEDWRIDDI 523
G H L + TV E + EA ++D +
Sbjct: 63 GNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARA 122
Query: 524 KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIPSKEML 582
+ LL R DR LSGG++ R+A + M++P LL DEPT LD +
Sbjct: 123 EKLLKRLRL-KPYADRYPLHLSGGQQQRVAIARALMMEPQVLL-FDEPTAALDPEITAQI 180
Query: 583 EEAISEYKGTVIT---VSHDRYFVKQIVNRVV 611
I E T IT V+H+ ++ +RVV
Sbjct: 181 VSIIKELAETGITQVIVTHEVEVARKTASRVV 212
|
Length = 242 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 4e-15
Identities = 67/231 (29%), Positives = 106/231 (45%), Gaps = 60/231 (25%)
Query: 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++S V LEN+S S+ VL DV+ E+K G+ + L+G NGAGK+T +R++ G PD G
Sbjct: 1 MTSLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEG- 59
Query: 154 VIKAKSNMKIAFLSQE--FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD 211
VIK ++I ++ Q+ + ++ TV F+ L D
Sbjct: 60 VIKRNGKLRIGYVPQKLYLDTTLPLTV-NRFLR------------------LRPGTKKED 100
Query: 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271
++ L ++ QA +L +DA + KL S G R+ L
Sbjct: 101 ILPAL--------KRVQAGHL--IDAPMQKL------------------SGGETQRVLLA 132
Query: 272 KILLQDPDLLLLDEPTNHLDL-------DTIEWLEGYLGKQDVPMVIISHD 315
+ LL P LL+LDEPT +D+ D I+ L L ++++SHD
Sbjct: 133 RALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELD---CAVLMVSHD 180
|
Length = 251 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 4e-15
Identities = 54/226 (23%), Positives = 94/226 (41%), Gaps = 41/226 (18%)
Query: 424 VVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-- 477
++ +KNL + +A + +++GE I+G +G GKS L K IMGL
Sbjct: 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNA 60
Query: 478 ---GGEVLLGEHNVLP--------------NYFEQNQAEALDLDKTVLETVAEA------ 514
GGE+L ++L Q+ +L+ T+ + +AE
Sbjct: 61 RIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGK 120
Query: 515 --AEDWRIDDIKGLLGRCNFKADMLDRKVSL----LSGGEKARLAFCKFMVKPSTLLVLD 568
++ + LL +R++ LSGG + R+ + LL+ D
Sbjct: 121 GLSKKEAKERAIELLELVGIPDP--ERRLKSYPHELSGGMRQRVMIAMALALNPKLLIAD 178
Query: 569 EPTNHLDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRV 610
EPT LD+ + ++L+E E +I ++HD V +I +RV
Sbjct: 179 EPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRV 224
|
Length = 316 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 4e-15
Identities = 65/254 (25%), Positives = 99/254 (38%), Gaps = 62/254 (24%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
+++EN+SK Y G LK++ + GE V ++G +GAGK+T LR I EP SG+++
Sbjct: 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61
Query: 157 A-------------KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEME-IAGKL-----E 197
K +I + Q + + TV E + L E
Sbjct: 62 EGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEE 121
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
++AL L+ L + Q D L
Sbjct: 122 DKERALS-----------ALERVGLADKAYQRA--DQL---------------------- 146
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIIS- 313
S G Q R+++ + L Q PDL+L DEP LD T + + YL K+D VII+
Sbjct: 147 ---SGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINL 203
Query: 314 HDRAFLDQLCTKIV 327
H + +IV
Sbjct: 204 HQVDLAKKYADRIV 217
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 77.0 bits (189), Expect = 4e-15
Identities = 55/203 (27%), Positives = 92/203 (45%), Gaps = 28/203 (13%)
Query: 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG-- 478
+ I +L Y + + +L IE GE A+IG +GCGK+TLL+ I G K G
Sbjct: 2 ACGGIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLT 61
Query: 479 GEVLLGEHNV--LPNYFEQN-----QAEALDLDKTVLETVA---------EAAEDWRIDD 522
G + + + ++ P + ++ Q AL V + VA +A R+ D
Sbjct: 62 GRIAIADRDLTHAPPH-KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVAD 120
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML 582
L+G + A + LSGG + R+A + + +L+LDEP + LD + +
Sbjct: 121 ALKLVGLGDAAA----HLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANM 176
Query: 583 EEAISEYKG-----TVITVSHDR 600
E I+ T++ V+HD+
Sbjct: 177 REEIAALHEELPELTILCVTHDQ 199
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 5e-15
Identities = 59/216 (27%), Positives = 95/216 (43%), Gaps = 39/216 (18%)
Query: 427 IKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
+ + Y + LF+ L +GE ++GP+G GKS+LL+++ LE PR G +
Sbjct: 5 LNGINCFYGAHQALFD-ITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL---- 59
Query: 486 HNVLPNYF----EQNQAEALDLDK---------------TVLETVAEA-------AEDWR 519
N+ N+F + +L + TV + + EA ++D
Sbjct: 60 -NIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQA 118
Query: 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIPS 578
+ + LL R DR LSGG++ R+A + M++P LL DEPT LD
Sbjct: 119 LARAEKLLERLRL-KPYADRFPLHLSGGQQQRVAIARALMMEPQVLL-FDEPTAALDPEI 176
Query: 579 KEMLEEAISEYKGTVIT---VSHDRYFVKQIVNRVV 611
+ I E T IT V+H+ ++ +RVV
Sbjct: 177 TAQIVSIIRELAETGITQVIVTHEVEVARKTASRVV 212
|
Length = 242 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 6e-15
Identities = 63/243 (25%), Positives = 96/243 (39%), Gaps = 67/243 (27%)
Query: 113 LKDVTWEVK---KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI---------KAKSN 160
L D T ++ E G+ G +GAGK+T LR IAG E+PD G ++ + K N
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69
Query: 161 M-----KIAFLSQEFEVSMSRTVRE--EFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
+ KI + Q++ + VRE F K E V + L
Sbjct: 70 LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNRED---RISVDELL---------- 116
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
+ LD L +R A S G + R++L +
Sbjct: 117 --------------DLLGLDHL-----------------LNRYPAQLSGGEKQRVALARA 145
Query: 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ----DVPMVIISHDRAFLDQLCTKIVET 329
L P+LLLLDEP + LD L L + ++P++ ++HD + + L +IV
Sbjct: 146 LAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVM 205
Query: 330 EMG 332
E G
Sbjct: 206 EDG 208
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 6e-15
Identities = 54/204 (26%), Positives = 81/204 (39%), Gaps = 37/204 (18%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
N++ S + + +++ + GE + + G NG GKTT LRI+AG PDSG
Sbjct: 3 ARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSG------- 55
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
EV + T E + G L ++ L SA++++ +
Sbjct: 56 -----------EVRWNGTALAEQRDEPHRNILYLGHLPGLKPEL-SALENLHFWAAIHGG 103
Query: 220 FDLLQRKA-QAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
A AV L GF D A S+G Q R++L ++ L
Sbjct: 104 AQRTIEDALAAVGLT-------------GFE----DLPAAQLSAGQQRRLALARLWLSRA 146
Query: 279 DLLLLDEPTNHLDLDTIEWLEGYL 302
L +LDEPT LD + L G L
Sbjct: 147 PLWILDEPTTALDKAGVALLAGLL 170
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 6e-15
Identities = 53/236 (22%), Positives = 100/236 (42%), Gaps = 48/236 (20%)
Query: 103 ISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMK 162
+ + + ++D+++E+ KGE VG +G NGAGK+T L+++ G P SG V + N K
Sbjct: 30 FHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV---RVNGK 86
Query: 163 IAFLSQEFEVSMSRTV-----REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
F +E + V + + + +E+ + + + +D + +L
Sbjct: 87 DPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAE--RLDFLTEIL 144
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
D L+ + + +L S G +MR L LL
Sbjct: 145 D----------------LEGFLKWPVRKL--------------SLGQRMRAELAAALLHP 174
Query: 278 PDLLLLDEPTNHLDLDTI------EWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
P +L LDEPT + LD E+L+ Y ++ +++ +H + LC +++
Sbjct: 175 PKVLFLDEPT--VGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVL 228
|
Length = 325 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 6e-15
Identities = 57/204 (27%), Positives = 91/204 (44%), Gaps = 51/204 (25%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+ L +SKSY V+ D+++ + +GE GL+G NGAGK+T R++ G PD G +
Sbjct: 5 IDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVL 64
Query: 156 ------KAK-SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQ-KALESAV 207
+A+ + + I + Q + TVRE + + G+ + + +E+ +
Sbjct: 65 GEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLL--------VFGRYFGMSTREIEAVI 116
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
L EF L+ KA D VA S G + R
Sbjct: 117 PS-------LLEFARLESKA--------------------------DVRVALLSGGMKRR 143
Query: 268 MSLGKILLQDPDLLLLDEPTNHLD 291
++L + L+ DP LL+LDEPT LD
Sbjct: 144 LTLARALINDPQLLILDEPTTGLD 167
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 7e-15
Identities = 60/211 (28%), Positives = 95/211 (45%), Gaps = 51/211 (24%)
Query: 97 GVKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++L ++S Y G VL V+ ++ GE+V ++G +G+GK+T L +AG +P G V
Sbjct: 334 TLELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVT 393
Query: 156 ----------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKE--EMEIAGKLERVQKAL 203
+ + +++ +Q+ + TVRE A + + E+ LERV A
Sbjct: 394 LDGVPVSSLDQDEVRRRVSVCAQDAHL-FDTTVRENLRLARPDATDEELWAALERVGLA- 451
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
D + L D LDT+ + E G A S G
Sbjct: 452 -------DWLRALPD------------GLDTV-------LGEGG----------ARLSGG 475
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
+ R++L + LL D +LLLDEPT HLD +T
Sbjct: 476 ERQRLALARALLADAPILLLDEPTEHLDAET 506
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 7e-15
Identities = 64/218 (29%), Positives = 93/218 (42%), Gaps = 30/218 (13%)
Query: 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ ++L + Y + N N R + A+IGPNG GKSTL + G+ KP G VL
Sbjct: 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL 62
Query: 483 L-GEHNVLPNYFE---------QNQAEALDLDKTVLETVA---------EAAEDWRIDDI 523
+ GE N E QN + + TV + +A E R+
Sbjct: 63 IRGEPITKENIREVRKFVGLVFQNPDDQI-FSPTVEQDIAFGPINLGLDEETVAHRVSSA 121
Query: 524 KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE--- 580
+LG ++ DR LSGGEK R+A + +LVLDEPT LD +
Sbjct: 122 LHMLGL----EELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELI 177
Query: 581 -MLEEAISEYKGTVITVSHDRYFVKQIVNRV-VEVKGS 616
L + Y TVI +H V ++ + + V KG
Sbjct: 178 DFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGR 215
|
Length = 277 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 7e-15
Identities = 59/200 (29%), Positives = 92/200 (46%), Gaps = 37/200 (18%)
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL-GEHNVLPNYFEQNQAEAL 501
A+ T+ TAI G +G GK+TL++LI GL +P GE++L G F+ + L
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGR-----TLFDSRKGIFL 70
Query: 502 DLDKTVLETVAEAA---------------------EDWRI--DDIKGLLGRCNFKADMLD 538
+K + V + A + RI + + LLG +L
Sbjct: 71 PPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLG----IGHLLG 126
Query: 539 RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE----MLEEAISEYKGTVI 594
R LSGGEK R+A + ++ LL++DEP LD P K LE +E+ ++
Sbjct: 127 RLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPIL 186
Query: 595 TVSHDRYFVKQIVNRVVEVK 614
VSH V ++ +RVV ++
Sbjct: 187 YVSHSLQEVLRLADRVVVLE 206
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 7e-15
Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 34/159 (21%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG--GEVL 482
VT+K+ +LL + + GE TAI+GP+G GKSTLL + G G GEVL
Sbjct: 11 VTVKSSPSKSGKQLL-KNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVL 69
Query: 483 LGEHNVLPNYFEQ-----NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML 537
+ + F + Q + L TV ET+ AA+ ++G
Sbjct: 70 INGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAK------LRG------------ 111
Query: 538 DRKVSLLSGGEKARLAF-CKFMVKPSTLLVLDEPTNHLD 575
LSGGE+ R++ + + PS LL LDEPT+ LD
Sbjct: 112 ------LSGGERKRVSIALELVSNPS-LLFLDEPTSGLD 143
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (184), Expect = 8e-15
Identities = 57/208 (27%), Positives = 83/208 (39%), Gaps = 56/208 (26%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI---KA 157
N+S G T+L DV+ ++ GE V ++G NGAGK+T LR ++G+ PDSG V +
Sbjct: 6 RNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRP 65
Query: 158 KSNMK-------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDM 210
++ A L Q +S TV E+
Sbjct: 66 LADWSPAELARRRAVLPQHSSLSFPFTVE-----------EVVA---------------- 98
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
MGR +A+ L V+ + ++ R S G Q R+ L
Sbjct: 99 --MGRA----PHGLSRAEDDAL------VAAALAQVDLAH-LAGRDYPQLSGGEQQRVQL 145
Query: 271 GKILLQ------DPDLLLLDEPTNHLDL 292
++L Q P LLLDEPT+ LDL
Sbjct: 146 ARVLAQLWEPDGPPRWLLLDEPTSALDL 173
|
Length = 258 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 8e-15
Identities = 57/194 (29%), Positives = 94/194 (48%), Gaps = 27/194 (13%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
I N+ + +L++++GE ++GP+GCGK+TLL++I GLE+ G + G
Sbjct: 7 IDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGR 66
Query: 487 NV--LP----NYFEQNQAEALDLDKTVLETVA-----------EAAEDWRIDDIKGLLGR 529
++ LP +Y Q+ AL + TV + +A E AE R+ ++ L+G
Sbjct: 67 DITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAE--RVAELLDLVGL 124
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI--- 586
+ + LSGG++ R+A + + LL+LDEP + LD +E L I
Sbjct: 125 PGSE----RKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQL 180
Query: 587 -SEYKGTVITVSHD 599
T I V+HD
Sbjct: 181 QRRLGVTTIMVTHD 194
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 9e-15
Identities = 74/302 (24%), Positives = 122/302 (40%), Gaps = 69/302 (22%)
Query: 391 KLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTI----------------KNLEFGY 434
K+ER + +E+ ++ Q Q + E ++G V + +N
Sbjct: 129 KIERRKRKEERQREVQY-QAHVAEMEAAKAGMPGVYVNHDGNGGGPAIKDIHMENFSISV 187
Query: 435 EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-----LIMGLEKPRGGEVLLGEHNV- 488
R L A++T+ G ++G NG GK+T L+ I G+ P+ ++L E V
Sbjct: 188 GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGI--PKNCQILHVEQEVV 245
Query: 489 ----------LPNYFEQNQ---AEA-LDLDKTVLETVAEAAED--------------WRI 520
L E+ Q EA L + LE E + R+
Sbjct: 246 GDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRL 305
Query: 521 DDI----------------KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564
++I +L +F +M + SGG + R+A + + L
Sbjct: 306 EEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDL 365
Query: 565 LVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGD 624
L+LDEPTNHLD+ + LE + ++ T I VSH R F+ +V ++ + G L Y GD
Sbjct: 366 LLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDILHLHGQKLVTYKGD 425
Query: 625 YN 626
Y+
Sbjct: 426 YD 427
|
Length = 718 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 9e-15
Identities = 58/244 (23%), Positives = 95/244 (38%), Gaps = 65/244 (26%)
Query: 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI---KAKSNM----- 161
+++LK V VK+GE V +VG +G+GK+T L ++AG ++P SG V + +
Sbjct: 23 LSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDAR 82
Query: 162 ------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
+ F+ Q F + + T E +E+ G+
Sbjct: 83 AALRARHVGFVFQSFHLIPNLTALENVALP----LELRGESSA----------------- 121
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV---ASFSSGWQMRMSLGK 272
D + +AV L G RL A S G Q R++L +
Sbjct: 122 --DSRAGAKALLEAVGL--------------------GKRLTHYPAQLSGGEQQRVALAR 159
Query: 273 ILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVE 328
PD+L DEPT +LD T + L ++ +V+++HD L C + +
Sbjct: 160 AFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ-LAARCDRQLR 218
Query: 329 TEMG 332
G
Sbjct: 219 LRSG 222
|
Length = 228 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 75.8 bits (186), Expect = 1e-14
Identities = 53/207 (25%), Positives = 90/207 (43%), Gaps = 50/207 (24%)
Query: 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD--SG 152
G++++++ +Y TVL D++ E++ GE + L+G +G GKTT LR IAG + +G
Sbjct: 3 CGGIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTG 62
Query: 153 NVIKAKSNMK--------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204
+ A ++ +A L Q + + V + AF
Sbjct: 63 RIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNV--AF------------------ 102
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
L + + + D+ +R A A+ L L D L A S G
Sbjct: 103 ------GLRAQKMPKADIAERVADALKLVGL--------------GDAAAHLPAQLSGGM 142
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLD 291
Q R+++ + + +PD+LLLDEP + LD
Sbjct: 143 QQRIAIARAIAIEPDVLLLDEPLSALD 169
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 1e-14
Identities = 69/268 (25%), Positives = 113/268 (42%), Gaps = 80/268 (29%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
S ++++N+ K + G TVL + EVK GE V ++G +G+GKTT LR I E+P++G +
Sbjct: 2 SAIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIR 61
Query: 155 -----------IKAKSNM------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLE 197
+ + + + F+ Q F + RTV E I G +
Sbjct: 62 VGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENI---------IEGPVI 112
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
+ E A A+ +L+ ++G +
Sbjct: 113 VKGEPKEEAT-----------------------------ARARELLAKVGLAGKE-TSYP 142
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMV 310
S G Q R+++ + L P+++L DEPT+ LD L+TI L ++ MV
Sbjct: 143 RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIR----QLAQEKRTMV 198
Query: 311 IISH---------DRA-FLDQLCTKIVE 328
I++H DRA F+DQ +IVE
Sbjct: 199 IVTHEMSFARDVADRAIFMDQ--GRIVE 224
|
Length = 250 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 1e-14
Identities = 54/199 (27%), Positives = 90/199 (45%), Gaps = 29/199 (14%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR---GGE 480
++ +KN+ L N TI +GE ++GP+GCGKSTLL ++G + GE
Sbjct: 2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGE 61
Query: 481 VLLGEH--NVLPNYFEQNQAEALDLDK------TVLETVAEAAEDWRIDDIKGLLGRCNF 532
+ L E ++LP Q Q L D +V + + A +KG R
Sbjct: 62 LWLNEQRLDMLPAA--QRQIGILFQDALLFPHLSVGQNLLFALP----ATLKGNARRNAA 115
Query: 533 KA--------DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEE 584
A + + LSGG++AR+A + ++ L+LDEP + LD+ ++ +
Sbjct: 116 NAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQ 175
Query: 585 AI-SEYKGT---VITVSHD 599
+ SE + + V+HD
Sbjct: 176 WVFSEVRAAGIPTVQVTHD 194
|
Length = 213 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 1e-14
Identities = 74/270 (27%), Positives = 118/270 (43%), Gaps = 49/270 (18%)
Query: 384 RASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLL-FNR 442
A A K+ +L+ F R Q FP+ + ++N+ F Y+D
Sbjct: 291 TAQVAFNKIAKLELAPYKAD-FPRPQ---AFPDW-----KTLELRNVRFAYQDNAFHVGP 341
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502
NLTI+RGE +IG NG GKSTL L+ GL +P+ GE+LL V AE L+
Sbjct: 342 INLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV--------SAEQLE 393
Query: 503 LDKTVLETVAEAAEDWRIDDIKGLLGRCN--------------FKADMLDRKVSL--LSG 546
+ + V ++ D + G G+ + K + D + S LS
Sbjct: 394 DYRKLFSAV--FSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLST 451
Query: 547 GEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS--KEMLEEAISEYKG---TVITVSHD-R 600
G+K RLA +++ +LVLDE D P+ +E + + K T+ +SHD
Sbjct: 452 GQKKRLALLLALLEERDILVLDEWAADQD-PAFRREFYQVLLPLLKEQGKTIFAISHDDH 510
Query: 601 YFV--KQIV----NRVVEVKGSNLQDYAGD 624
YF+ +++ ++ E+ G + A D
Sbjct: 511 YFIHADRLLEMRNGQLSELTGEERDETARD 540
|
Length = 546 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 1e-14
Identities = 61/225 (27%), Positives = 102/225 (45%), Gaps = 40/225 (17%)
Query: 435 EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL----------- 483
+ + + + ++ GE IIGP+G GKSTL +L++G+ P G V L
Sbjct: 347 QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDRE 406
Query: 484 --GEH-NVLPNYFE-------QNQAE-ALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNF 532
G H LP E +N A + D E V EAA R+ + L+ R
Sbjct: 407 QLGRHIGYLPQDVELFDGTIAENIARFGEEADP---EKVIEAA---RLAGVHELILRL-- 458
Query: 533 KADMLDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE 588
D ++ + LSGG++ R+A + + L+VLDEP ++LD + L AI
Sbjct: 459 -PQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILA 517
Query: 589 YK---GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630
K GTV+ ++H R V++++ ++ + + G +V +
Sbjct: 518 AKARGGTVVVIAH-RPSALASVDKILVLQDGRIAAF-GPREEVLA 560
|
Length = 580 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 1e-14
Identities = 61/230 (26%), Positives = 108/230 (46%), Gaps = 25/230 (10%)
Query: 407 RKQMKIRFPERGRSGRSVVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKS 464
R PE R +T +N+ F Y + + + NL I+ GE I+GP+G GKS
Sbjct: 442 RSAGLAALPEL----RGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKS 497
Query: 465 TLLKLIMGLEKPRGGEVLLGEHNVL---PNYFEQNQA----EALDLDKTVLETVAEA--- 514
TL KL+ L P+ G+VL+ ++ P + + E + +++ + +A
Sbjct: 498 TLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPG 557
Query: 515 AEDWRIDDIKGLLGRCNFKADM-------LDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567
A + L G +F +++ + K + LSGG++ R+A + +V +L+
Sbjct: 558 APFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIF 617
Query: 568 DEPTNHLDIPSKEMLEEAISEY-KG-TVITVSHDRYFVKQIVNRVVEVKG 615
DE T+ LD S+ ++ + E +G TVI ++H V+ +V KG
Sbjct: 618 DEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 70.9 bits (175), Expect = 2e-14
Identities = 34/99 (34%), Positives = 58/99 (58%), Gaps = 13/99 (13%)
Query: 98 VKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
++ +N+S SY + VLKDV+ +K GEKV +VG +G+GK+T L+++ +P SG +
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 155 --------IKAKSNMK-IAFLSQEFEVSMSRTVREEFMS 184
+ +S K IA++ Q+ + S T+RE +S
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFL-FSGTIRENILS 98
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 2e-14
Identities = 61/230 (26%), Positives = 106/230 (46%), Gaps = 53/230 (23%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+K+EN+SK +K LK+V+ EV++G+ ++G G+GK+ L IAG +PDSG ++
Sbjct: 1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLN 59
Query: 156 -KAKSNMK-----IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
K +N+ I+++ Q + + TV + A+ + K E +K LE
Sbjct: 60 GKDITNLPPEKRDISYVPQNYALFPHMTVYKNI--AYGLKKRKVDKKEIERKVLE----- 112
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+ +L LL RK + S G Q R++
Sbjct: 113 ---IAEMLGIDHLLNRK------------------------------PETLSGGEQQRVA 139
Query: 270 LGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHD 315
+ + L+ +P +LLLDEP + LD+ T E L+ + V ++ ++HD
Sbjct: 140 IARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHD 189
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 57/251 (22%), Positives = 99/251 (39%), Gaps = 85/251 (33%)
Query: 98 VKLENISKSY---------KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148
++++N+ K + + V + V++ +K+GE +GLVG +G GK+T R+I G EE
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 149 PDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
P SG ++ I LS KEE + ERV + LE
Sbjct: 65 PTSGEILFEG--KDITKLS-------------------KEE-----RRERVLELLE---- 94
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
++G + R S G + R+
Sbjct: 95 ------------------------------------KVGLPEEFLYRYPHELSGGQRQRI 118
Query: 269 SLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAFLDQ 321
+ + L +P L++ DEP + LD L+ ++ L+ LG + + ISHD + +
Sbjct: 119 GIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELG---LTYLFISHDLSVVRY 175
Query: 322 LCTKIVETEMG 332
+ +I +G
Sbjct: 176 ISDRIAVMYLG 186
|
Length = 268 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 2e-14
Identities = 57/207 (27%), Positives = 96/207 (46%), Gaps = 25/207 (12%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ I N+ + + NL + G A++GP+G GKSTLL++I GLE+P G + L
Sbjct: 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLN 60
Query: 485 EHNVLPNYFEQN------QAEALDLDKTVLETVA---------EAAEDWRIDDIKGLLGR 529
+ + Q AL TV + +A +A R++++ L+
Sbjct: 61 GQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQL 120
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLDEPTNHLDIPSKE----MLEE 584
DR + LSGG++ R+A + + V+P LL LDEP LD ++ L +
Sbjct: 121 EGLG----DRYPNQLSGGQRQRVALARALAVEPQVLL-LDEPFGALDAKVRKELRSWLRK 175
Query: 585 AISEYKGTVITVSHDRYFVKQIVNRVV 611
E T + V+HD+ ++ +R+V
Sbjct: 176 LHDEVHVTTVFVTHDQEEAMEVADRIV 202
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 2e-14
Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 58/247 (23%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ +EN+SKSY VL DV+ ++ KG ++G NGAGK+T L +++ + DSG +
Sbjct: 2 ITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITID 61
Query: 158 KSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ K++ L QE ++ TVR+ + F G+ Q L
Sbjct: 62 GLELTSTPSKELAKKLSILKQENHINSRLTVRD--LVGF-------GRFPYSQGRLTK-- 110
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+D ++ ++ L D DR + S G + R
Sbjct: 111 EDRRIINEAIEYLHL---------------------------EDLSDRYLDELSGGQRQR 143
Query: 268 MSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAFLD 320
+ +L QD D +LLDEP N+LD + + L LGK +V++ HD F
Sbjct: 144 AFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKT---IVVVLHDINFAS 200
Query: 321 QLCTKIV 327
IV
Sbjct: 201 CYSDHIV 207
|
Length = 252 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 2e-14
Identities = 55/204 (26%), Positives = 86/204 (42%), Gaps = 48/204 (23%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-IK 156
++ EN+SK Y + DV +++GE + L+G +G+GKTT L++I EP SG + I
Sbjct: 2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILID 61
Query: 157 AKSNM---------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ KI ++ Q+ + TV E A ++ K ++A E
Sbjct: 62 GEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENI--ATVPKLLGWDKERIKKRADEL-- 117
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+DL+G LD + R EL S G Q R
Sbjct: 118 --LDLVG--LDPSEYADRYPH----------------EL--------------SGGQQQR 143
Query: 268 MSLGKILLQDPDLLLLDEPTNHLD 291
+ + + L DP +LL+DEP LD
Sbjct: 144 VGVARALAADPPILLMDEPFGALD 167
|
Length = 309 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 74.2 bits (182), Expect = 2e-14
Identities = 68/250 (27%), Positives = 116/250 (46%), Gaps = 52/250 (20%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LL 483
+ + + Y D+++ N + TI RGE ++GPNG GKST+ ++++G+ P G++ +L
Sbjct: 5 IDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVL 64
Query: 484 GEH------------NVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD------IKG 525
GE V+P Q + LD + TV E + + + I
Sbjct: 65 GEPVPSRARLARVAIGVVP------QFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPS 118
Query: 526 LL--GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583
LL R KAD+ +V+LLSGG K RL + ++ LL+LDEPT LD ++ ++
Sbjct: 119 LLEFARLESKADV---RVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIW 175
Query: 584 E---AISEYKGTVITVSH---------DRYFVKQIVNRVVEVKGSNLQD----------Y 621
E ++ T++ +H DR V + ++ E + L D Y
Sbjct: 176 ERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDEQIGCNVIEIY 235
Query: 622 AGDYNQVQSL 631
GD ++++ L
Sbjct: 236 GGDPDELREL 245
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 2e-14
Identities = 54/220 (24%), Positives = 102/220 (46%), Gaps = 37/220 (16%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
S + +KNL + + + + +L ++ GE AIIGP+G GK+TLL+ I LE+P G +
Sbjct: 2 SAIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIR 61
Query: 483 LGEHNV---LPNYFEQNQAEALDLD-------------KTVLETVAEA-------AEDWR 519
+G+ + ++ L +TVLE + E ++
Sbjct: 62 VGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEA 121
Query: 520 IDDIKGLLGRCNF--KADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
+ LL + K R+ LSGG++ R+A + + +++ DEPT+ LD
Sbjct: 122 TARARELLAKVGLAGKETSYPRR---LSGGQQQRVAIARALAMRPEVILFDEPTSALD-- 176
Query: 578 SKEMLEE------AISEYKGTVITVSHDRYFVKQIVNRVV 611
E++ E +++ K T++ V+H+ F + + +R +
Sbjct: 177 -PELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAI 215
|
Length = 250 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 2e-14
Identities = 64/208 (30%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
+ + ++S + TVL V V++G VGLVG NGAGKTT LR I G P +G V
Sbjct: 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVA 63
Query: 155 ---IKAKS----NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
++A S + ++A + Q+ +S VR+ +E
Sbjct: 64 GDDVEALSARAASRRVASVPQDTSLSFEFDVRQ---------------------VVE--- 99
Query: 208 DDMDLMGRL--LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
MGR FD +T A V + M G A DR V S S G +
Sbjct: 100 -----MGRTPHRSRFDTWT--------ETDRAAVERAMERTG-VAQFADRPVTSLSGGER 145
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLD 293
R+ L + L Q +LLLDEPT LD++
Sbjct: 146 QRVLLARALAQATPVLLLDEPTASLDIN 173
|
Length = 402 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 3e-14
Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 23/186 (12%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--PNYFEQ-----NQ 497
E GE T ++G NG GK+TLL++I L P G+V + + + P++ +
Sbjct: 23 FEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFG 82
Query: 498 AEALDLDKTVLETVAEAAE---------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGE 548
L T E + A RI ++ L + LDR+V S G
Sbjct: 83 ERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQL----LEYLDRRVGEFSTGM 138
Query: 549 KARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHDRYFVKQ 605
K ++A + +V ++LVLDEPT+ LDI ++ + I + K VI SH V+
Sbjct: 139 KQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEA 198
Query: 606 IVNRVV 611
+ +RV+
Sbjct: 199 LCDRVI 204
|
Length = 245 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 3e-14
Identities = 35/164 (21%), Positives = 59/164 (35%), Gaps = 57/164 (34%)
Query: 137 TTQLRIIAGQEEPDSGNVI-----------KAKSNMKIAFLSQEFEVSMSRTVREE-FMS 184
+T L++I G +P SG ++ + +I + Q+ ++ TVRE F
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 185 AFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244
+E + R ++ALE
Sbjct: 61 LRDKEAD-----ARAEEALE---------------------------------------- 75
Query: 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTN 288
+G V + S G + R+++ + LL+ P LLLLDEPT
Sbjct: 76 RVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 3e-14
Identities = 55/202 (27%), Positives = 88/202 (43%), Gaps = 50/202 (24%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI----- 155
+N++K+YKG V++DV+ V GE VGL+G NGAGKTT ++ G D+GN+I
Sbjct: 7 KNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDED 66
Query: 156 ------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
A++ I +L QE + +V + M+ ++I L Q+
Sbjct: 67 ISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAV----LQIRDDLSAEQRE------- 115
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
D L++EF + L +G S S G + R+
Sbjct: 116 -DRANELMEEFH-----------------IEHLRDSMG----------QSLSGGERRRVE 147
Query: 270 LGKILLQDPDLLLLDEPTNHLD 291
+ + L +P +LLDEP +D
Sbjct: 148 IARALAANPKFILLDEPFAGVD 169
|
Length = 241 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 4e-14
Identities = 51/181 (28%), Positives = 70/181 (38%), Gaps = 45/181 (24%)
Query: 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG----EHNVLPN------YFEQNQAE 499
GE ++GPNG GKSTLL + G+ G + E Y Q Q
Sbjct: 25 GEILHLVGPNGAGKSTLLARMAGM-TSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTP 83
Query: 500 ALDL-----------DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGE 548
+ DKT E ++D+ G L D L R + LSGGE
Sbjct: 84 PFAMPVWHYLTLHQPDKTRTE---------LLNDVAGALAL----DDKLGRSTNQLSGGE 130
Query: 549 --KARLAFCKFMVKP-----STLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSH 598
+ RLA + P LL+LDEP N LD+ + L+ +S ++ SH
Sbjct: 131 WQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSH 190
Query: 599 D 599
D
Sbjct: 191 D 191
|
Length = 248 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 4e-14
Identities = 49/170 (28%), Positives = 82/170 (48%), Gaps = 33/170 (19%)
Query: 455 IIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE--------HN-----VLPNY-------FE 494
++GP+GCGK+TLL+L+ G E+P G ++L H V +Y E
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60
Query: 495 QNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF 554
+N A L + K + R+ + L+ + DRK LSGG++ R+A
Sbjct: 61 ENVAFGLKMRKVPRAEIKP-----RVLEALRLVQL----EEFADRKPHQLSGGQQQRVAL 111
Query: 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLE---EAISEYKG-TVITVSHDR 600
+ +V +L+LDEP + LD ++ ++ + I E G T + V+HD+
Sbjct: 112 ARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQ 161
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 5e-14
Identities = 70/246 (28%), Positives = 105/246 (42%), Gaps = 54/246 (21%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
L+ +S S+ G L D+++ V GE L+G NGAGKTT + +I G+ P G V
Sbjct: 7 YLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDG 66
Query: 155 ---IKAKSNMKIAFLS-----QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
+ +IA Q+ V + TVR E +E+A ++ A
Sbjct: 67 DTDLTKLPEHRIARAGIGRKFQKPTVFENLTVR--------ENLELALNRDKSVFAS--- 115
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT--ADDGDRLVASFSSGW 264
L RL E + +D L L D+ DRL A S G
Sbjct: 116 -----LFARLRAE--------ERRRIDEL----------LATIGLGDERDRLAALLSHGQ 152
Query: 265 QMRMSLGKILLQDPDLLLLDEP----TNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLD 320
+ + +G +L QDP LLLLDEP T+ T E L+ GK + +++ HD F+
Sbjct: 153 KQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSI--LVVEHDMGFVR 210
Query: 321 QLCTKI 326
++ K+
Sbjct: 211 EIADKV 216
|
Length = 249 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 5e-14
Identities = 60/182 (32%), Positives = 84/182 (46%), Gaps = 29/182 (15%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAE---- 499
L ++RGE AI+GP+G GKSTLL ++ GL+ P GEV L L E +A
Sbjct: 30 ELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQP-LHKLDEDARAALRAR 88
Query: 500 ---------ALDLDKTVLETVA-------EAAEDWRIDDIKGLLGRCNFKADMLDRKVSL 543
L + T LE VA E++ D R K LL L +
Sbjct: 89 HVGFVFQSFHLIPNLTALENVALPLELRGESSADSR-AGAKALLEAVGL-GKRLTHYPAQ 146
Query: 544 LSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIPSKE----MLEEAISEYKGTVITVSH 598
LSGGE+ R+A + F +P +L DEPT +LD + + +L E T++ V+H
Sbjct: 147 LSGGEQQRVALARAFAGRPD-VLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTH 205
Query: 599 DR 600
D
Sbjct: 206 DP 207
|
Length = 228 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 5e-14
Identities = 58/193 (30%), Positives = 86/193 (44%), Gaps = 31/193 (16%)
Query: 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEAL 501
AN T+ TA+ GP+G GK++L+ +I GL +P G + L VL + + L
Sbjct: 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGR-VL---VDAEKGIFL 71
Query: 502 DLDK----------------TV---LETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVS 542
+K TV L + + D + LLG +LDR
Sbjct: 72 PPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLG----IEHLLDRYPG 127
Query: 543 LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE----MLEEAISEYKGTVITVSH 598
LSGGEK R+A + ++ LL++DEP LD+P K LE E ++ VSH
Sbjct: 128 TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSH 187
Query: 599 DRYFVKQIVNRVV 611
V ++ +RVV
Sbjct: 188 SLDEVLRLADRVV 200
|
Length = 352 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 6e-14
Identities = 56/188 (29%), Positives = 83/188 (44%), Gaps = 45/188 (23%)
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP--------------- 490
T G+ I+GPNG GKST LK++ G KP LG + P
Sbjct: 96 TPRPGKVVGILGPNGIGKSTALKILAGELKPN-----LGRYEDPPSWDEVIKRFRGTELQ 150
Query: 491 NYFEQNQAEALD--------------LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM 536
NYF++ L + V E + + E + D++ LG N +
Sbjct: 151 NYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLEN----V 206
Query: 537 LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA-----ISEYKG 591
LDR VS LSGGE R+A +++ + + DEP+++LDI ++ L A ++E
Sbjct: 207 LDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDI--RQRLNAARVIRELAEDGK 264
Query: 592 TVITVSHD 599
VI V HD
Sbjct: 265 YVIVVEHD 272
|
Length = 591 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 6e-14
Identities = 57/203 (28%), Positives = 81/203 (39%), Gaps = 52/203 (25%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
++NI K + T LKD++ VKKGE V L+G +G GKTT LRIIAG E +G + +
Sbjct: 6 SIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTI--YQ 63
Query: 159 SNMKIAFLS----------QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
I L Q + + + TV + A+ + G+ E ++ E
Sbjct: 64 GGRDITRLPPQKRDYGIVFQSYALFPNLTVADNI--AYGLKNRGMGRAEVAERVAE---- 117
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
LLD L + S G Q R+
Sbjct: 118 -------LLDLVGLP---------------------------GSERKYPGQLSGGQQQRV 143
Query: 269 SLGKILLQDPDLLLLDEPTNHLD 291
+L + L P LLLLDEP + LD
Sbjct: 144 ALARALATSPGLLLLDEPLSALD 166
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 8e-14
Identities = 57/213 (26%), Positives = 97/213 (45%), Gaps = 56/213 (26%)
Query: 98 VKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
V+ +N++ Y G VL+D++ ++ GE V LVG +G+GK+T + +I + DSG +
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 155 --------IKAKS-NMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIA-GKLERVQK 201
S +I +SQ+ F + TV E IA G+ ++
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLF----NDTVAE----------NIAYGRPGATRE 106
Query: 202 ALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFS 261
+E A A+A N + +PE G+ G+R V S
Sbjct: 107 EVEEA--------------------ARAANAHEFIME----LPE-GYDTVIGERGV-KLS 140
Query: 262 SGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
G + R+++ + LL+DP +L+LDE T+ LD ++
Sbjct: 141 GGQRQRIAIARALLKDPPILILDEATSALDTES 173
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 9e-14
Identities = 55/184 (29%), Positives = 87/184 (47%), Gaps = 25/184 (13%)
Query: 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPNYFEQ----NQA 498
GE + G +G GKSTLLKLI G+E+P G++ H++ +P Q Q
Sbjct: 28 GEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQD 87
Query: 499 EALDLDKTVLETVA-----EAAEDWRIDDIKGLLGRCNFKADMLDRKVSL---LSGGEKA 550
L +D+TV + VA A DDI+ + K +LD+ + LSGGE+
Sbjct: 88 HHLLMDRTVYDNVAIPLIIAGASG---DDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQ 144
Query: 551 RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHDRYFVKQIV 607
R+ + +V +L+ DEPT +LD E + E+ TV+ +HD + +
Sbjct: 145 RVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRS 204
Query: 608 NRVV 611
R++
Sbjct: 205 YRML 208
|
Length = 222 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 9e-14
Identities = 65/214 (30%), Positives = 98/214 (45%), Gaps = 54/214 (25%)
Query: 425 VTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MG--LEKPR-G 478
+ ++NL Y + + LF+ ++ I + TA IGP+GCGKSTLL+ M ++ R
Sbjct: 26 LEVRNLNLFYGDKQALFD-ISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIE 84
Query: 479 GEVLLGEHNVL-------------------PNYFE----QNQAEALDL----DKTVLETV 511
GE+ L N+ PN F +N L L ++ VL+
Sbjct: 85 GEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEA 144
Query: 512 AE----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLV 566
E A W D++K D L LSGG++ RL + + ++P LL
Sbjct: 145 VERSLRGAALW--DEVK----------DRLHENAFGLSGGQQQRLVIARAIAIEPEVLL- 191
Query: 567 LDEPTNHLDIPSKEMLEEAISEYKG--TVITVSH 598
LDEPT+ LD S +EE I+E K T++ V+H
Sbjct: 192 LDEPTSALDPISTLKIEELITELKSKYTIVIVTH 225
|
Length = 272 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 1e-13
Identities = 54/232 (23%), Positives = 99/232 (42%), Gaps = 53/232 (22%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-- 154
++ EN++ SY + VLKD+ + +K GE V +VG GAGKTT + ++ +P G +
Sbjct: 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILI 62
Query: 155 ---------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
K+ +M I + Q+ S T+ E
Sbjct: 63 DGIDIRDISRKSLRSM-IGVVLQD-TFLFSGTIMENI----------------------- 97
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK-LMPELGFTADDGDRLVASFSSGW 264
+GR + + A+ K+ LG ++G L S G
Sbjct: 98 ------RLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLG---ENGGNL----SQGE 144
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314
+ +++ + +L+DP +L+LDE T+++D +T + ++ L K + +II+H
Sbjct: 145 RQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAH 196
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 1e-13
Identities = 57/242 (23%), Positives = 103/242 (42%), Gaps = 34/242 (14%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++L I+ Y L D+T + +GE + L+G +GAGK++ LR++ E P SG + A
Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
++ + + + R +R F ++ + L + +E+ + L
Sbjct: 63 GNHFDFSKTPSDKAI---RDLRRNVGMVF-QQYNLWPHLTVQENLIEAPCRVLGLSKD-- 116
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
Q A+A KL+ L DR S G Q R+++ + L+ +
Sbjct: 117 ------QALARAE----------KLLKRLRL-KPYADRYPLHLSGGQQQRVAIARALMME 159
Query: 278 PDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETE 330
P +LL DEPT LD + I+ L + VI++H+ + +++V E
Sbjct: 160 PQVLLFDEPTAALDPEITAQIVSIIKELAE----TGITQVIVTHEVEVARKTASRVVYME 215
Query: 331 MG 332
G
Sbjct: 216 NG 217
|
Length = 242 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 1e-13
Identities = 60/206 (29%), Positives = 91/206 (44%), Gaps = 36/206 (17%)
Query: 425 VTIKNLEFGYEDRLLFNR-----ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
+T + +E Y+ + F R N++I G AIIG G GKSTLL+ + GL +P G
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 480 EVLLGEHNVLPNYFEQNQAEALDLDKTV------------LETVAE----------AAED 517
V +GE + + + L K V ETV + +E+
Sbjct: 63 TVTIGERVITA---GKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEE 119
Query: 518 WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
+ ++ ++L R LSGG+ R+A + +LVLDEPT LD P
Sbjct: 120 DAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD-P 178
Query: 578 S--KEMLE--EAISEYKG-TVITVSH 598
KEM+E + + KG T + V+H
Sbjct: 179 KGRKEMMEMFYKLHKEKGLTTVLVTH 204
|
Length = 290 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 1e-13
Identities = 54/205 (26%), Positives = 87/205 (42%), Gaps = 49/205 (23%)
Query: 98 VKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-I 155
++ EN++K Y G + ++ E+ KGE + L+G +G+GKTT +++I EP SG + I
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60
Query: 156 KAKSNM---------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
+ KI ++ Q+ + TV +E + + KL + K
Sbjct: 61 DGEDIREQDPVELRRKIGYVIQQIGLFPHMTV--------EENIALVPKLLKWPKE---- 108
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
+ + +A D L A V + F DR S G Q
Sbjct: 109 -----------------KIRERA---DELLALVG--LDPAEF----ADRYPHELSGGQQQ 142
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD 291
R+ + + L DP LLL+DEP LD
Sbjct: 143 RVGVARALAADPPLLLMDEPFGALD 167
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 1e-13
Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 48/211 (22%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
+++E ++KS+ + ++++EV GE GL+G NGAGKTT R+I G EP G +
Sbjct: 1 MALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEIT 60
Query: 155 -----IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG-KLERVQKALESAVD 208
+ + +I +L +E + TV ++ K E+ G +QK L+
Sbjct: 61 WNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQ----LKYLAELKGMPKAEIQKKLQ---- 112
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
L+R L+ + K K + S G Q ++
Sbjct: 113 ------------AWLER------LEIVGKKTKK---------------IKELSKGNQQKI 139
Query: 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLE 299
++ +P+LL+LDEP + LD +E L+
Sbjct: 140 QFISAVIHEPELLILDEPFSGLDPVNVELLK 170
|
Length = 300 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 1e-13
Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 45/211 (21%)
Query: 424 VVTIKNLE--FGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
V++I+NL +G+ ++LF+ NL I GE + GP+G GK+TLL LI GL +
Sbjct: 1 VISIRNLNHYYGHGSLRKQVLFD-INLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQE 59
Query: 479 GEV-LLGE-----------------------HNVLPNY-FEQNQAEALDL-DKTVLETVA 512
G + +LG+ HN+L QN AL+L +
Sbjct: 60 GSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEAR 119
Query: 513 EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572
E A + GL ++ LSGG+K R+A + +V L++ DEPT
Sbjct: 120 ERARAML--EAVGLGDHLDYYPHN-------LSGGQKQRVAIARALVHRPKLVLADEPTA 170
Query: 573 HLDIPSK----EMLEEAISEYKGTVITVSHD 599
LD S E++++ E T++ V+HD
Sbjct: 171 ALDSKSGRDVVELMQKLAREQGCTILIVTHD 201
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 2e-13
Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 36/191 (18%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYFE 494
++E+GE ++GPNG GK+T +++I+G+ P GEVL + LP
Sbjct: 21 FSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLP---- 76
Query: 495 QNQAEALDLDKTVLE-----------TVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSL 543
+ L V++ EA RID+ L R ++ +++V
Sbjct: 77 --EERGLYPKMKVIDQLVYLAQLKGLKKEEARR--RIDE---WLERLEL-SEYANKRVEE 128
Query: 544 LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHDR 600
LS G + ++ F ++ LL+LDEP + LD + E+L++ I E TVI +H
Sbjct: 129 LSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQM 188
Query: 601 YFVKQIVNRVV 611
V+++ +RV+
Sbjct: 189 ELVEELCDRVL 199
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 2e-13
Identities = 45/202 (22%), Positives = 81/202 (40%), Gaps = 37/202 (18%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
+ ++ G + +++ + GE + + G NG+GKTT LRI+AG P +G
Sbjct: 4 DELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAG-------- 55
Query: 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEF 220
V ++ + + + G + K S ++++ +
Sbjct: 56 ----------RVLLNGGPLDFQRDSIARGLLYLGHAPGI-KTTLSVLENLRFWHADHSDE 104
Query: 221 DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280
+ + A+ V L+ GF DR VA S+G Q R++L ++LL L
Sbjct: 105 QVEEALAR-VGLN-------------GF----EDRPVAQLSAGQQRRVALARLLLSGRPL 146
Query: 281 LLLDEPTNHLDLDTIEWLEGYL 302
+LDEPT LD + +
Sbjct: 147 WILDEPTTALDKAGVARFAEAM 168
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 2e-13
Identities = 55/172 (31%), Positives = 84/172 (48%), Gaps = 30/172 (17%)
Query: 434 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLGEH------ 486
Y D+ + N + T+ GE ++GPNG GKST+ ++I+G+ P G++ +LG
Sbjct: 51 YGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARAR 110
Query: 487 ------NVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD------IKGLL--GRCNF 532
V+P Q + LDL+ TV E + + + I LL R
Sbjct: 111 LARARIGVVP------QFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES 164
Query: 533 KADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEE 584
KAD +VS LSGG K RL + ++ LL+LDEPT LD ++ ++ E
Sbjct: 165 KADA---RVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWE 213
|
Length = 340 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 2e-13
Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 50/205 (24%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ V L N++K+Y V + KD+ ++ +GE V VG +G GK+T LR+IAG E+ SG++
Sbjct: 2 ASVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLF 61
Query: 156 KAKSNMKIAFLSQEFEVS-MSRTVREEFMS-------AFKEEMEIAGKLERVQKA-LESA 206
+ M +V R V F S + E M KL +K +
Sbjct: 62 IGEKRMN--------DVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQR 113
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
V+ + +L LL RK +A+ S G +
Sbjct: 114 VNQ---VAEVLQLAHLLDRKPKAL------------------------------SGGQRQ 140
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD 291
R+++G+ L+ +P + LLDEP ++LD
Sbjct: 141 RVAIGRTLVAEPSVFLLDEPLSNLD 165
|
Length = 369 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 2e-13
Identities = 59/188 (31%), Positives = 89/188 (47%), Gaps = 40/188 (21%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV- 481
+ + +N+E Y D+L+ + + ++RGE ++GPNG GK+T L++++GL P G +
Sbjct: 6 APIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSIS 65
Query: 482 LLGEH------------NVLPNYFEQNQAEALDLDKTVLE-----------TVAEAAEDW 518
L GE V+P Q + LD D TV E + A A
Sbjct: 66 LCGEPVPSRARHARQRVGVVP------QFDNLDPDFTVRENLLVFGRYFGLSAAAARA-- 117
Query: 519 RIDDIKGLL--GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576
+ LL + KAD KV LSGG K RL + +V +LVLDEPT LD
Sbjct: 118 ---LVPPLLEFAKLENKADA---KVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDP 171
Query: 577 PSKEMLEE 584
++ ++ E
Sbjct: 172 QARHLMWE 179
|
Length = 306 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 2e-13
Identities = 63/206 (30%), Positives = 92/206 (44%), Gaps = 36/206 (17%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMGLEKPR 477
+ ++NL F Y NL I + + TA IGP+GCGKSTLL+ L
Sbjct: 14 IQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAE- 72
Query: 478 GGEVLLGEHNVL-------------------PNYFEQNQAEALDLDKTVLETVAEAAEDW 518
GE+LL N+L P F + + + + E ++ A D
Sbjct: 73 -GEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDE 131
Query: 519 RIDDI--KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLD 575
R++ K L N D L + LSGG++ RL + ++P LL LDEP + LD
Sbjct: 132 RVEWALTKAAL--WNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLL-LDEPCSALD 188
Query: 576 IPSKEMLEEAISEYKG--TVITVSHD 599
S +EE I+E K TV+ V+H+
Sbjct: 189 PISTGRIEELITELKQDYTVVIVTHN 214
|
Length = 260 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 2e-13
Identities = 54/198 (27%), Positives = 95/198 (47%), Gaps = 22/198 (11%)
Query: 423 SVVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
++ ++N+ F Y + + I GE AI+G NG GKST+ K++ GL KP+ GE
Sbjct: 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGE 65
Query: 481 VLL-GEHNVLPNYFE---------QNQAEALDLDKTVLETVAEAAEDWRID--DIKGLLG 528
+ + G N E QN + TV + +A E+ ++ +K ++
Sbjct: 66 IKIDGITISKENLKEIRKKIGIIFQNPDNQF-IGATVEDDIAFGLENKKVPPKKMKDIID 124
Query: 529 RCNFKADM---LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585
K M LD++ LSGG+K R+A + +++ DE T+ LD K +++
Sbjct: 125 DLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKI 184
Query: 586 ISEY----KGTVITVSHD 599
+ + K T+I+++HD
Sbjct: 185 MVDLRKTRKKTLISITHD 202
|
Length = 271 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 2e-13
Identities = 60/209 (28%), Positives = 101/209 (48%), Gaps = 27/209 (12%)
Query: 413 RFPERGRSGRSVVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
R ER R G V +N+ F Y DR + +L IE GE A++G +G GKSTL+ LI
Sbjct: 322 RAIERAR-GD--VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLI 378
Query: 471 MGLEKPRGGEVLLGEHNV-------LPNYFEQNQAEALDLDKTVLETVAEAA-EDWRIDD 522
+P G++LL H++ L + + + T+ +A E +
Sbjct: 379 PRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAE 438
Query: 523 IKGLLGRCNFKADMLDR-----------KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571
I+ L + D +D+ LLSGG++ RLA + ++K + +L+LDE T
Sbjct: 439 IERALAAAYAQ-DFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEAT 497
Query: 572 NHLDIPSKEMLEEAISE-YKG-TVITVSH 598
+ LD S+ +++ A+ +G T + ++H
Sbjct: 498 SALDNESERLVQAALERLMQGRTTLVIAH 526
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 2e-13
Identities = 56/211 (26%), Positives = 95/211 (45%), Gaps = 57/211 (27%)
Query: 98 VKLENISKSY----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++L+NISK + + + L +V+ + GE G++G +GAGK+T +R I E P SG
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 154 VIKAKSNM-------------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQ 200
V+ ++ +I + Q F + SRTV + A +E+AG
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNV--ALP--LELAGT----- 112
Query: 201 KALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASF 260
KA+ + A+V++L+ +G +D DR A
Sbjct: 113 ------------------------PKAE------IKARVTELLELVGL-SDKADRYPAQL 141
Query: 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
S G + R+++ + L +P +LL DE T+ LD
Sbjct: 142 SGGQKQRVAIARALASNPKVLLCDEATSALD 172
|
Length = 343 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 2e-13
Identities = 61/209 (29%), Positives = 90/209 (43%), Gaps = 37/209 (17%)
Query: 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
S ++V ++ + F +R +F+ +LT+ RG+ TAI+GP+G GK+TLL+LI G P G
Sbjct: 3 SVANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHG 62
Query: 480 EVLLGEHNVLPNYFEQN------------QAEALDLDKTVLETVA-EAAEDWRIDDI--- 523
E+L N+ P Q+ AL D V + VA E ++
Sbjct: 63 EILFDGENI-PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLH 121
Query: 524 ---------KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
GL G S LSGG R A + + L++ DEP
Sbjct: 122 STVMMKLEAVGLRGAAKLMP-------SELSGGMARRAALARAIALEPDLIMFDEPFVGQ 174
Query: 575 DIPSKEMLEEAISEYKG----TVITVSHD 599
D + +L + ISE T + VSHD
Sbjct: 175 DPITMGVLVKLISELNSALGVTCVVVSHD 203
|
Length = 269 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 3e-13
Identities = 58/208 (27%), Positives = 94/208 (45%), Gaps = 28/208 (13%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++NL Y D + + RGE ++GPNG GK+T +K++ L KP G +
Sbjct: 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVA 60
Query: 485 EHNVL--PNYFEQN-----QAEALDLDKTVLETV-----------AEAAEDWRIDDIKGL 526
H+V+ P + Q ++D + T E + AE E RID++
Sbjct: 61 GHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRE--RIDELLDF 118
Query: 527 LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI 586
+G DR V SGG + RL + +V +L LDEPT LD ++ + E I
Sbjct: 119 VGLLEAA----DRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYI 174
Query: 587 SEYKG----TVITVSHDRYFVKQIVNRV 610
+ K T++ +H +Q+ +RV
Sbjct: 175 EKLKEEFGMTILLTTHYMEEAEQLCDRV 202
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 3e-13
Identities = 61/236 (25%), Positives = 102/236 (43%), Gaps = 63/236 (26%)
Query: 420 SGRSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477
SG + + + F Y L+ + +L IE GE AI+GP+G GKSTLL+L++G E P
Sbjct: 449 SGA--IEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE 506
Query: 478 GGEVLLGEHNVLPNYFEQNQAEALDLDK-----------------TVLETVAEAA----- 515
G V +++ LD+ ++ E +A A
Sbjct: 507 SGSV----------FYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLD 556
Query: 516 EDWRI-------DDIK----GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564
E W +DI+ G+ ++ LSGG++ RL + +V+ +
Sbjct: 557 EAWEAARMAGLAEDIRAMPMGM-------HTVISEGGGTLSGGQRQRLLIARALVRKPRI 609
Query: 565 LVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSH--------DRYFVKQIVNRVVE 612
L+ DE T+ LD ++ ++ E++ K T I ++H DR +V RVV+
Sbjct: 610 LLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRNADRIYVLD-AGRVVQ 664
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (168), Expect = 3e-13
Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 20/187 (10%)
Query: 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
L+F Y D+ L + + + G + G NG GK+TLLKLI GL P GE+L ++
Sbjct: 6 ELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI 65
Query: 489 ---LPNYFEQ--------NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD-M 536
L Y +Q L L + L + + I ++ L F + +
Sbjct: 66 KKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRL-----FSLEHL 120
Query: 537 LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK---GTV 593
+D LLS G+K ++A + + + L +LDEP LD S + I E++ G V
Sbjct: 121 IDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAV 180
Query: 594 ITVSHDR 600
+ SH
Sbjct: 181 LLTSHQD 187
|
Length = 200 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 3e-13
Identities = 58/198 (29%), Positives = 100/198 (50%), Gaps = 29/198 (14%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V +KN+ + + + NLTI++G ++GP+GCGK+T+L+L+ GLEKP G++ +
Sbjct: 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFID 66
Query: 485 EHNVLPNYFEQN------QAEALDLDKTVLETV-----------AEAAEDWRIDDIKGLL 527
+V +Q Q+ AL ++ E V E + R+ + L+
Sbjct: 67 GEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQ--RVKEALELV 124
Query: 528 GRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNHLDIPSKEMLEEAI 586
F+ DR V +SGG++ R+A + ++ KP LL DEP ++LD + + E I
Sbjct: 125 DLAGFE----DRYVDQISGGQQQRVALARALILKPKVLL-FDEPLSNLDANLRRSMREKI 179
Query: 587 SEYKG----TVITVSHDR 600
E + T + V+HD+
Sbjct: 180 RELQQQFNITSLYVTHDQ 197
|
Length = 351 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 3e-13
Identities = 60/205 (29%), Positives = 95/205 (46%), Gaps = 50/205 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
+++ NI KS+ VL D++ ++ G+ V L+G +G+GKTT LRIIAG E SG++
Sbjct: 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFH 62
Query: 155 ------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
+ A+ + K+ F+ Q + + TV + AF + L R ++
Sbjct: 63 GTDVSRLHAR-DRKVGFVFQHYALFRHMTVFDNI--AFGLTV-----LPRRERP------ 108
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL--MPELGFTADDGDRLVASFSSGWQM 266
N + AKV++L M +L A DR A S G +
Sbjct: 109 ----------------------NAAAIKAKVTQLLEMVQLAHLA---DRYPAQLSGGQKQ 143
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD 291
R++L + L +P +LLLDEP LD
Sbjct: 144 RVALARALAVEPQILLLDEPFGALD 168
|
Length = 353 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 3e-13
Identities = 54/222 (24%), Positives = 97/222 (43%), Gaps = 33/222 (14%)
Query: 423 SVVTIKNLEFGYEDRLLF---------NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473
S++ ++++ Y LF +L+IE GE ++G +GCGKSTL +L++GL
Sbjct: 1 SLLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGL 60
Query: 474 EKPRGGEVLLGEHNVLPNYFEQNQA-------------EALDLDKTVLETVAEAAEDW-- 518
EKP G V ++ +Q +A A++ TV + + E
Sbjct: 61 EKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTS 120
Query: 519 -----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNH 573
+ I LL +++ D+ LSGG+ R+ + + L+VLDE ++
Sbjct: 121 LDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSN 180
Query: 574 LDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVV 611
LD+ + E+L + + + ++HD V+ RV
Sbjct: 181 LDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVA 222
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 3e-13
Identities = 57/223 (25%), Positives = 93/223 (41%), Gaps = 49/223 (21%)
Query: 427 IKNLEFGYEDRLLFNR-----ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
I+NL Y + F + N+ IE GE +IG G GKSTL++ + GL KP G++
Sbjct: 5 IENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKI 64
Query: 482 LLGEHNV-------------------LPNY--FEQNQAEALDL--------DKTVLETVA 512
++ ++ P Y FE+ + + ++ + V
Sbjct: 65 IIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVK 124
Query: 513 EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572
A +D D D+ LSGG+K R+A + +L+LDEPT
Sbjct: 125 RAMNIVGLD-----------YEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTA 173
Query: 573 HLDIPSKEMLEEAIS----EYKGTVITVSHDRYFVKQIVNRVV 611
LD ++ + I EY T+I VSH V ++ +R++
Sbjct: 174 GLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRII 216
|
Length = 287 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 4e-13
Identities = 60/228 (26%), Positives = 104/228 (45%), Gaps = 53/228 (23%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V ++ + + + N ++ GEK A+IGP+G GKST+L+++M LE G++ +
Sbjct: 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQV- 59
Query: 485 EHNVLPNYFEQN----QAEALDL------------------DKTVLETVAEA-------- 514
E L + +N A+ L KTVL+ V EA
Sbjct: 60 EGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMA 119
Query: 515 ---AEDWRID--DIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569
AE ++ D+ GL AD D + LSGG++ R+A + + +++ DE
Sbjct: 120 RAEAEKRAMELLDMVGL-------ADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDE 172
Query: 570 PTNHLDIPSKEMLEEAI-------SEYKGTVITVSHDRYFVKQIVNRV 610
T+ LD E++ E + SE+ T++ V+H+ F ++ +RV
Sbjct: 173 VTSALD---PELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRV 217
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 5e-13
Identities = 56/231 (24%), Positives = 111/231 (48%), Gaps = 37/231 (16%)
Query: 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170
VL +V+ +++GE VGL+G +G GK+T R++ G E+P G V +F Q+
Sbjct: 25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTV---------SFRGQD- 74
Query: 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230
+ + R++ AF+ ++++ V + SAV+ + +++ E
Sbjct: 75 ---LYQLDRKQ-RRAFRRDVQL------VFQDSPSAVNPRMTVRQIIGE--------PLR 116
Query: 231 NLDTLD-----AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDE 285
+L +LD A++++L+ +G ++D D+L S G R+++ + L P L++LDE
Sbjct: 117 HLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDE 176
Query: 286 PTNHLDL----DTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMG 332
++LD+ +E L + I+HD + C ++ + G
Sbjct: 177 AVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKG 227
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 5e-13
Identities = 56/223 (25%), Positives = 98/223 (43%), Gaps = 29/223 (13%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ K + + + + ++ E G I+GP+G GKSTL+KLI L P G +L+
Sbjct: 4 IEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILID 63
Query: 485 EHNVL-----------------PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLL 527
++ P+ FE + ++ + + + D++ L
Sbjct: 64 GVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPML--------KGEKNVDVEYYL 115
Query: 528 GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAIS 587
+ R V LSGGE R++ + + +L+LDEPT+ LD S E++EE I
Sbjct: 116 SIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIV 175
Query: 588 EYKG----TVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626
+ K TVI ++H+ K+I + + L +YA Y+
Sbjct: 176 KLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYD 218
|
Length = 241 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 5e-13
Identities = 67/216 (31%), Positives = 98/216 (45%), Gaps = 56/216 (25%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMGLEKPR 477
+++K+L+ Y D + NL IE + TA+IGP+GCGKST L+ LI ++
Sbjct: 4 ISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIE- 62
Query: 478 GGEVLLGEHNVL-------------------PNYFE----QNQAEALDL----DKTVLET 510
GEVLL ++ PN F N A DK L+
Sbjct: 63 -GEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDE 121
Query: 511 VAE----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLL 565
+ E A W D++K D L + LSGG++ RL + + V+P LL
Sbjct: 122 IVEKSLKGAALW--DEVK----------DRLKKSALGLSGGQQQRLCIARALAVEPEVLL 169
Query: 566 VLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
+DEPT+ LD S +EE I E K T++ V+H+
Sbjct: 170 -MDEPTSALDPISTLKIEELIQELKKDYTIVIVTHN 204
|
Length = 250 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 5e-13
Identities = 61/207 (29%), Positives = 103/207 (49%), Gaps = 39/207 (18%)
Query: 423 SVVTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
+++ +KNL F Y +++ N + +++GE +IIG NG GKST ++LI GL + G
Sbjct: 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESG 62
Query: 480 EV-----LLGEHNVLP-------------NYF-----EQNQAEALDLDKTVLETVAEAAE 516
++ LL E NV N F E + A L+ E + E
Sbjct: 63 QIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKE--- 119
Query: 517 DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576
R+++ L+G +FK +R+ + LSGG+K R+A + +++LDE T+ LD
Sbjct: 120 --RVNEALELVGMQDFK----EREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173
Query: 577 PSKEMLEEAI----SEYKGTVITVSHD 599
+ L + I +Y+ TVI+++HD
Sbjct: 174 EGRLELIKTIKGIRDDYQMTVISITHD 200
|
Length = 279 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.2 bits (169), Expect = 5e-13
Identities = 65/216 (30%), Positives = 99/216 (45%), Gaps = 52/216 (24%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MGLEKPRG-- 478
++ +K+L Y ++ N ++ IE+ TA+IGP+GCGKST L+ I M P
Sbjct: 20 HILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARS 79
Query: 479 -GEVLLGEHNVL-------------------PNYFEQ----NQAEALD---------LDK 505
GE+L N+L PN F + N AL LD+
Sbjct: 80 EGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDE 139
Query: 506 TVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565
V E++ +AA W D++K D L LSGG++ RL + + +L
Sbjct: 140 IVEESLTKAAL-W--DEVK----------DRLHSSALSLSGGQQQRLCIARTLAMKPAVL 186
Query: 566 VLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
+LDEP + LD S +EE I+E K ++I V+H+
Sbjct: 187 LLDEPASALDPISNAKIEELITELKEEYSIIIVTHN 222
|
Length = 268 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 6e-13
Identities = 62/236 (26%), Positives = 96/236 (40%), Gaps = 50/236 (21%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MGLEKPR---G 478
++ + +L Y + N +L E TA+IGP+G GKSTLL+ I M P
Sbjct: 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTIT 64
Query: 479 GEVLLGEHNVL-------------------PNYFE----QNQAEALDL----DKTVLETV 511
G ++ HN+ PN F +N L L DK VL+
Sbjct: 65 GSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEA 124
Query: 512 AE----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567
E A W D++K D L LSGG++ R+ + + +++L
Sbjct: 125 VEKSLKGASIW--DEVK----------DRLHDSALGLSGGQQQRVCIARVLATSPKIILL 172
Query: 568 DEPTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFVKQIVNRVVEVKGSNLQDY 621
DEPT+ LD S +EE + K T++ V+ +I +R +L +Y
Sbjct: 173 DEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEY 228
|
Length = 252 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 7e-13
Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 25/161 (15%)
Query: 436 DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG---GEVLLGEHNVLPNY 492
+ N +L +E G+ AI+G +G GK+TLL I G + G G++L P+
Sbjct: 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQ 78
Query: 493 FEQNQAEALDLDK-----TVLETV------------AEAAEDWRIDDIKGLLGRCNFKAD 535
F++ A D TV ET+ ++A R++D+ LL
Sbjct: 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDV--LLRDLALT-R 135
Query: 536 MLDRKVSLLSGGEKARLAF-CKFMVKPSTLLVLDEPTNHLD 575
+ V +SGGE+ R++ + + P L+ LDEPT+ LD
Sbjct: 136 IGGNLVKGISGGERRRVSIAVQLLWDPKVLI-LDEPTSGLD 175
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 8e-13
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 37/156 (23%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-------------VLP 490
+L + GE ++GP+GCGKSTLL+++ GLE+ GE+ +G V
Sbjct: 24 DLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQ 83
Query: 491 NY-------FEQNQAEALD---LDKTVLET-VAEAAEDWRIDDIKGLLGRCNFKADMLDR 539
NY +N A L + K +E VAEAA RI ++ +LDR
Sbjct: 84 NYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAA---RILEL----------EPLLDR 130
Query: 540 KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575
K LSGG++ R+A + +V+ + + DEP ++LD
Sbjct: 131 KPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
|
Length = 356 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 8e-13
Identities = 68/270 (25%), Positives = 118/270 (43%), Gaps = 51/270 (18%)
Query: 383 GRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGY--EDRLLF 440
A A K+L L P + M + PE ++++N+ +
Sbjct: 285 SGARQAYKRLNELLANY----PSRDPAMPLPEPE------GHLSVENVTIVPPGGKKPTL 334
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL-------------GEH- 486
+ +++ GE AIIGP+G GKSTL +LI+G+ P G V L G+H
Sbjct: 335 RGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHI 394
Query: 487 NVLPNYFE-------QNQA---EALDLDKTVLETVAEAAEDWRIDDIKGLLGRC--NFKA 534
LP E +N A E D +K + EAA ++ + L+ R +
Sbjct: 395 GYLPQDVELFPGTVAENIARFGENADPEK-----IIEAA---KLAGVHELILRLPDGYDT 446
Query: 535 DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK---G 591
+ +L SGG++ R+A + + L+VLDEP ++LD ++ L AI K
Sbjct: 447 VIGPGGATL-SGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGI 505
Query: 592 TVITVSHDRYFVKQIVNRVVEVKGSNLQDY 621
TV+ ++H R + V++++ ++ + +
Sbjct: 506 TVVVITH-RPSLLGCVDKILVLQDGRIARF 534
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 8e-13
Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 14/166 (8%)
Query: 430 LEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL 489
L + + R +LTI GE ++GP+GCGK+TLL LI G P G + L +
Sbjct: 11 LSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIE 70
Query: 490 PNYFEQN---QAEALDLDKTVLETVA--------EAAEDWRIDDIKGLLGRCNFKADMLD 538
E+ Q EAL V++ VA E A+ R + +L
Sbjct: 71 GPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQ--RREIAHQMLALVGL-EGAEH 127
Query: 539 RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEE 584
+ + LSGG + R+ + + LL+LDEP LD ++E ++E
Sbjct: 128 KYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQE 173
|
Length = 259 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 1e-12
Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 37/166 (22%)
Query: 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDR 316
V + S G + R+ L ++ L+ +LL+LDEPTN LD++T+E LE L ++++SHDR
Sbjct: 438 VKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDR 497
Query: 317 AFLDQLCTK--IVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWE-------------- 360
F+D T+ I E + R Y G Y ++A ++ + A +
Sbjct: 498 QFVDNTVTECWIFEGNGKIGR-YVGGYHDARQQQAQYLALKQPAVKKKEEAAAPKAETVK 556
Query: 361 --------KQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEE 398
K QRE+EQ L+ L E ++E LQ +
Sbjct: 557 RSSKKLSYKLQRELEQLPQLLEDL------------EAEIEALQAQ 590
|
Length = 635 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 1e-12
Identities = 54/227 (23%), Positives = 96/227 (42%), Gaps = 53/227 (23%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
V+ +++K + L+ E+ +GE +G+VG NG GKTT +++AG +PD G V
Sbjct: 341 VEYPDLTKKLGDFS-LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV--- 396
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
+KI++ Q + TV E+ L + L S+ +++ L
Sbjct: 397 DPELKISYKPQYIKPDYDGTV-EDL-------------LRSITDDLGSSYYKSEIIKPL- 441
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
L+ +L+ D+ V S G R+++ L +D
Sbjct: 442 -------------QLE-------RLL----------DKNVKDLSGGELQRVAIAACLSRD 471
Query: 278 PDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLD 320
DL LLDEP+ HLD L + + +++ +++ HD +D
Sbjct: 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMID 518
|
Length = 590 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 1e-12
Identities = 61/199 (30%), Positives = 93/199 (46%), Gaps = 42/199 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
V L+NI+K + TV+ ++ +K+G V L+G +G GKTT LR++AG E+P G +
Sbjct: 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI--- 63
Query: 158 KSNMKIAFLSQEFEVSMS----RTVREEFMS-AFKEEMEIAGKLERVQKALESAVDDMDL 212
F+ E +V+ R + F S A M + E V L+ +
Sbjct: 64 -------FIDGE-DVTHRSIQQRDICMVFQSYALFPHMSLG---ENVGYGLK-------M 105
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
+G +E QR +A+ L L GF DR V S G Q R++L +
Sbjct: 106 LGVPKEE--RKQRVKEALELVDLA----------GF----EDRYVDQISGGQQQRVALAR 149
Query: 273 ILLQDPDLLLLDEPTNHLD 291
L+ P +LL DEP ++LD
Sbjct: 150 ALILKPKVLLFDEPLSNLD 168
|
Length = 351 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 1e-12
Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 26/194 (13%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ +NL ++R+LF+ + T+ GE I GPNG GK++LL+++ GL +P GEVL
Sbjct: 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLW 60
Query: 484 -GE--HNVLPNYFEQ----NQAEALDLDKTVLETVA-------EAAED--WRIDDIKGLL 527
GE Y + + + T LE + ++ W GL
Sbjct: 61 QGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLA 120
Query: 528 GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAIS 587
G D V LS G++ R+A + + + L +LDEP +D LE ++
Sbjct: 121 GF-------EDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLA 173
Query: 588 EY---KGTVITVSH 598
++ G VI +H
Sbjct: 174 QHAEQGGMVILTTH 187
|
Length = 204 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 2e-12
Identities = 48/212 (22%), Positives = 76/212 (35%), Gaps = 61/212 (28%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
E+++ G + +++ + GE + L G NG+GKTT LR+IAG P +G + +
Sbjct: 6 EDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGD 65
Query: 161 MKIAFLSQEFEVS--------MSR--TVRE--EFMSAFKEEMEIAGKLERVQKALESAVD 208
E M TV E EF +AF G+ + ALE
Sbjct: 66 ---IDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFL-----GGEELDIAAALE---- 113
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
AV L L S+G + R+
Sbjct: 114 --------------------AVGLAPL-----------------AHLPFGYLSAGQKRRV 136
Query: 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG 300
+L ++L+ + + +LDEPT LD +
Sbjct: 137 ALARLLVSNRPIWILDEPTAALDAAAVALFAE 168
|
Length = 207 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 2e-12
Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 44/179 (24%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
S + +NL Y+ R + N +L + GE ++GPNG GK+T +I+GL +P G++
Sbjct: 2 MSTLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKI 61
Query: 482 LLGEHNV--LPNY----------------F-----EQNQAEALDL---DKTVLETVAEAA 515
LL + ++ LP + F E N L++ D E E
Sbjct: 62 LLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELD 121
Query: 516 ---EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF-CKFMVKPSTLLVLDEP 570
E++ I ++ D K LSGGE+ R+ P +L LDEP
Sbjct: 122 ALLEEFHITHLR-------------DSKAYSLSGGERRRVEIARALAANPKFIL-LDEP 166
|
Length = 243 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 2e-12
Identities = 54/184 (29%), Positives = 83/184 (45%), Gaps = 38/184 (20%)
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG---------EVLLGEH---NVLPNYF 493
+ G+ T I+GPNG GK+T +K++ G P G EVL + L NYF
Sbjct: 95 IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVL--KRFRGTELQNYF 152
Query: 494 EQNQAEALD--------------LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDR 539
++ + V E + + E ++D++ LG N +LDR
Sbjct: 153 KKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLEN----ILDR 208
Query: 540 KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA--ISEY--KGTVIT 595
+S LSGGE R+A +++ + DEPT++LDI ++ L A I E V+
Sbjct: 209 DISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDI--RQRLNVARLIRELAEGKYVLV 266
Query: 596 VSHD 599
V HD
Sbjct: 267 VEHD 270
|
Length = 590 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 2e-12
Identities = 61/210 (29%), Positives = 90/210 (42%), Gaps = 48/210 (22%)
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502
NL I GE AIIGP+G GKSTLL+ I L +P G +LL ++ +
Sbjct: 21 INLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDI-------TKLRGKK 73
Query: 503 LDK------------------TVLETVAEAAEDWRIDDIKGLLGRCNFK----------- 533
L K TVLE V + LLGR F
Sbjct: 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLG-YKPTWRSLLGR--FSEEDKERALSAL 130
Query: 534 -----ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD-IPSKEMLE--EA 585
AD ++ LSGG++ R+A + + + L++ DEP LD SK++++ +
Sbjct: 131 ERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKR 190
Query: 586 ISEYKG-TVITVSHDRYFVKQIVNRVVEVK 614
I++ G TVI H K+ +R+V +K
Sbjct: 191 INKEDGITVIINLHQVDLAKKYADRIVGLK 220
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 2e-12
Identities = 50/211 (23%), Positives = 89/211 (42%), Gaps = 50/211 (23%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV----- 154
+ I K++ GV L D++++ + G+ L+G NGAGK+T L+I++G +PD+G++
Sbjct: 7 FDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQ 66
Query: 155 ------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
A +A + QE + TV E
Sbjct: 67 EMRFASTTAALAAGVAIIYQELHLVPEMTVAENLY------------------------- 101
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG-WQMR 267
+G+L + ++ R+ L+ + + + LG D D + S G QM
Sbjct: 102 ----LGQLPHKGGIVNRR-------LLNYEAREQLEHLGVDIDP-DTPLKYLSIGQRQM- 148
Query: 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWL 298
+ + K L ++ ++ DEPT+ L IE L
Sbjct: 149 VEIAKALARNARVIAFDEPTSSLSAREIEQL 179
|
Length = 501 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 2e-12
Identities = 57/218 (26%), Positives = 95/218 (43%), Gaps = 21/218 (9%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
+SKSY G +DV++++ GE +G+VG +G+GK+T L +AG+ PD G +
Sbjct: 8 GLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSG 67
Query: 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
L Q E R +R E+ F + G RV M + R
Sbjct: 68 AELELYQLSEAERRRLMRTEW--GFVHQNPRDGLRMRVSAGANIGERLMAIGAR------ 119
Query: 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLL 281
+ + A + E+ D L +FS G Q R+ + + L+ P L+
Sbjct: 120 ---------HYGNIRATAQDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLV 170
Query: 282 LLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHD 315
+DEPT LD+ ++ L G + + ++I++HD
Sbjct: 171 FMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHD 208
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 2e-12
Identities = 58/203 (28%), Positives = 91/203 (44%), Gaps = 38/203 (18%)
Query: 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEA------ 500
I GE AI+G +G GKSTLL L+ GL+ P G+V+ + +AE
Sbjct: 32 IGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIF-NGQPMSKLSSAAKAELRNQKLG 90
Query: 501 -------LDLDKTVLETVA----------EAAEDWRIDDIK--GLLGRCNFKADMLDRKV 541
L D T LE VA ++ + GL R N +
Sbjct: 91 FIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRP------- 143
Query: 542 SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTV-ITVS 597
S LSGGE+ R+A + +V L++ DEPT +LD + + + + + E +GT + V+
Sbjct: 144 SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVT 203
Query: 598 HDRYFVKQIVNRVVEVKGSNLQD 620
HD K++ +R +E++ L
Sbjct: 204 HDLQLAKRM-SRQLEMRDGRLTA 225
|
Length = 233 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-12
Identities = 51/206 (24%), Positives = 92/206 (44%), Gaps = 36/206 (17%)
Query: 422 RSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
++ ++++ F Y D + ++ GE AI+G NG GKSTL KL+ GL P G
Sbjct: 3 EEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG 62
Query: 480 EVLLGEHNVLPNYFEQNQAEALDLDK----------------TVLETVAEAAE------D 517
+ +G ++ D+ + TV + VA E +
Sbjct: 63 TITVGG-------MVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPRE 115
Query: 518 WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
++ + L + + D L+R+ LSGG+K R+A + +++LDE T+ LD
Sbjct: 116 EMVERVDQALRQVGME-DFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPR 174
Query: 578 SKEMLEEAISEYKG----TVITVSHD 599
+ + E + + K TV++++HD
Sbjct: 175 GRREVLETVRQLKEQKGITVLSITHD 200
|
Length = 279 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 2e-12
Identities = 48/196 (24%), Positives = 94/196 (47%), Gaps = 23/196 (11%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+T +++ F Y + ++ + +L I+ GE I+G +G GKSTL KLI P G VL
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 483 LGEHN---VLPNYFEQNQA----EALDLDKTVLETVA---EAAEDWRIDDIKGLLGRCNF 532
+ H+ P + + E + ++++ + +A R+ + L G +F
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDF 120
Query: 533 KADM-------LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEE- 584
+++ + + + LSGG++ R+A + ++ +L+ DE T+ LD S+ +
Sbjct: 121 ISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRN 180
Query: 585 --AISEYKGTVITVSH 598
I + TVI ++H
Sbjct: 181 MHDICAGR-TVIIIAH 195
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 2e-12
Identities = 60/244 (24%), Positives = 116/244 (47%), Gaps = 35/244 (14%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
E++ K Y VLK V+ + G+ + ++G +G+GK+T LR I E+P +G++
Sbjct: 10 EDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIR----- 64
Query: 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDL---MGRLL 217
++ E E+ + R + A K +L+R++ L +L M L
Sbjct: 65 -----VNGE-EIRLKRDKDGQLKPADKR------QLQRLRTRLGMVFQHFNLWSHMTVLE 112
Query: 218 DEFD-----LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
+ + L KA+A+ + K + ++G A+ D A S G Q R+++ +
Sbjct: 113 NVIEAPVHVLGVSKAEAI------ERAEKYLAKVGI-AEKADAYPAHLSGGQQQRVAIAR 165
Query: 273 ILLQDPDLLLLDEPTNHLDLDTI-EWLE--GYLGKQDVPMVIISHDRAFLDQLCTKIVET 329
L +P+++L DEPT+ LD + + E L+ L ++ MV+++H+ F + + ++
Sbjct: 166 ALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFL 225
Query: 330 EMGV 333
G
Sbjct: 226 HQGK 229
|
Length = 256 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 3e-12
Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 20/163 (12%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ +NL Y R + N +L++++GE ++GPNG GK+T +I+GL KP G++LL
Sbjct: 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLD 60
Query: 485 EHNV--LP---------NYFEQNQAEALDLDKTVLETVAEAAE------DWRIDDIKGLL 527
++ LP Y Q + L TV E + E R + ++ LL
Sbjct: 61 GQDITKLPMHKRARLGIGYLPQEASIFRKL--TVEENILAVLEIRGLSKKEREEKLEELL 118
Query: 528 GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570
+ + K S LSGGE+ R+ + + L+LDEP
Sbjct: 119 EEFHITH-LRKSKASSLSGGERRRVEIARALATNPKFLLLDEP 160
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 3e-12
Identities = 48/214 (22%), Positives = 77/214 (35%), Gaps = 56/214 (26%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++ EN+S T+ D+++ + GE + + G NGAGKTT LRI+AG PD+G V
Sbjct: 3 LEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQ 62
Query: 158 KSNMK---------IAFLSQEFEVSMSRTVREE--FMSAFKEEMEIAGKLERVQKALESA 206
++ + +L + + T E F F + A
Sbjct: 63 GEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGN--------AATIWEA 114
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
+ + L G D V S+G Q
Sbjct: 115 LAQVGLAGLE-------------------------------------DLPVGQLSAGQQR 137
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG 300
R++L ++ L L +LDEP LD + + L
Sbjct: 138 RVALARLWLSPAPLWILDEPFTALDKEGVALLTA 171
|
Length = 209 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 3e-12
Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 17/183 (9%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--PNYFEQN----- 496
N + GE +GPNG GK+T ++++ L +P G + ++V+ P ++
Sbjct: 13 NFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVP 72
Query: 497 QAEALDLDKTVLETVAEAAE-----DWRIDD-IKGLLGRCNFKADMLDRKVSLLSGGEKA 550
Q ++D D T E + ++ + LL + DR V SGG +
Sbjct: 73 QYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELG-EAADRPVGTYSGGMRR 131
Query: 551 RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHDRYFVKQIV 607
RL ++ +L LDEPT LD ++ + + I K T++ +H ++
Sbjct: 132 RLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLC 191
Query: 608 NRV 610
+R+
Sbjct: 192 DRI 194
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 3e-12
Identities = 51/213 (23%), Positives = 85/213 (39%), Gaps = 58/213 (27%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
++ EN+S S G +L V+ +++ GE + ++G NGAGK+T L+ ++G+ PDSG V
Sbjct: 2 IRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLN 61
Query: 155 --------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES- 205
+ + + A L Q ++ TV+E ++ R+
Sbjct: 62 GVPLNSWPPEELARHR-AVLPQNSSLAFPFTVQEVV------------QMGRIPHRSGRE 108
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
+D + + L DL G R + S G Q
Sbjct: 109 PEEDERIAAQALAATDL-----------------------SGLAG----RDYRTLSGGEQ 141
Query: 266 MRMSLGKILLQ------DPDLLLLDEPTNHLDL 292
R+ L ++L Q L LDEPT+ LD+
Sbjct: 142 QRVQLARVLAQLWPPVPSGRWLFLDEPTSALDI 174
|
Length = 259 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 3e-12
Identities = 65/221 (29%), Positives = 92/221 (41%), Gaps = 52/221 (23%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG----LEKPRG- 478
++T +L R + +L IE G TA++G NG GKSTLLK + G PRG
Sbjct: 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGA 60
Query: 479 ---GEVLL-GEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGR----- 529
G+V L GE P A L + VL A+ A + +I LLGR
Sbjct: 61 RVTGDVTLNGE----P--LAAIDAPRLARLRAVLPQAAQPAFAFSAREIV-LLGRYPHAR 113
Query: 530 -----------------CNFKADMLD-RKVSLLSGGEKARLAFCKFMVK---------PS 562
A L R V+ LSGGE AR+ F + + + P
Sbjct: 114 RAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPP 173
Query: 563 TLLVLDEPTNHLDIPSKEMLEEAI----SEYKGTVITVSHD 599
L+LDEPT LD+ + L + + ++ V+ + HD
Sbjct: 174 RYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHD 214
|
Length = 272 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (165), Expect = 3e-12
Identities = 64/244 (26%), Positives = 116/244 (47%), Gaps = 28/244 (11%)
Query: 396 QEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRL--LFNRANLTIERGEKT 453
Q++ ++++ +K+ ++ + + +V I+N F Y +R + + NL I+R + T
Sbjct: 52 QKKAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVT 111
Query: 454 AIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL---------- 503
A IGP+GCGKST L+ + L G GE L + +L+L
Sbjct: 112 AFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQK 171
Query: 504 ----DKTVLETVAEAAEDWRIDDIKGL--LGRCNFKA--------DMLDRKVSLLSGGEK 549
+ ++ + VA + I+D K L + + K+ D LD+ + LSGG++
Sbjct: 172 PTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQ 231
Query: 550 ARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFVKQIV 607
RL + + +L++DEPT+ LD + +EE I E K ++I V+H ++I
Sbjct: 232 QRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRIS 291
Query: 608 NRVV 611
+ V
Sbjct: 292 DETV 295
|
Length = 329 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 4e-12
Identities = 66/219 (30%), Positives = 86/219 (39%), Gaps = 46/219 (21%)
Query: 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA-----KSNMKIAFLSQ--EFE 171
KGE +GL+G NGAGKTT LR I G P G V A K I ++ Q EF
Sbjct: 2 SADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFA 61
Query: 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231
+V MS + G L R A +AV D L+R V
Sbjct: 62 WDFPISVAHTVMSGRTGHI---GWLRRPCVADFAAVRDA------------LRR----VG 102
Query: 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
L L DR V S G + R+ + + L P +LLLDEP LD
Sbjct: 103 LTEL-----------------ADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLD 145
Query: 292 LDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCTKIV 327
+ T E L L +++ +HD A C ++V
Sbjct: 146 MPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVV 184
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 4e-12
Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 22/200 (11%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++++ L+F E + LF+ ++T T I G NGCGKS+LL++I G+ +P G +
Sbjct: 1 MLSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYY 59
Query: 484 GEHNVLPN--------YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCN-FK- 533
N N Y N L L+ TV E + +E + + + L + FK
Sbjct: 60 --KNCNINNIAKPYCTYIGHNL--GLKLEMTVFENLKFWSEIY--NSAETLYAAIHYFKL 113
Query: 534 ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI---SEYK 590
D+LD K LS G + +A + + S L +LDE +L ++++L I +
Sbjct: 114 HDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSG 173
Query: 591 GTVITVSHDRYFVK--QIVN 608
G V+ SH +K QI+
Sbjct: 174 GIVLLSSHLESSIKSAQILQ 193
|
Length = 195 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 4e-12
Identities = 62/214 (28%), Positives = 105/214 (49%), Gaps = 33/214 (15%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ KN+ + + + +L I++GE IIGP+G GKSTLL+ I LE+ G++++
Sbjct: 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV 60
Query: 484 GEHNVL-PNYFEQN-QAEA--------LDLDKTVLETVA-----------EAAEDWRIDD 522
V P E+ + EA L T LE V E AE +
Sbjct: 61 DGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARE- 119
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLDEPTNHLDIPS--K 579
LL + S LSGG++ R+A + + VKP L++ DEPT+ LD P
Sbjct: 120 ---LLAKVGLAERA-HHYPSELSGGQQQRVAIARALAVKPK-LMLFDEPTSALD-PELRH 173
Query: 580 EMLE--EAISEYKGTVITVSHDRYFVKQIVNRVV 611
E+L+ + ++E T++ V+H+ F +++ +R++
Sbjct: 174 EVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLI 207
|
Length = 240 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 5e-12
Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 49/220 (22%)
Query: 87 SNTGASSISSGVKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144
+ + A++ + L N+S +Y VLK ++ ++K GEKV L+G G GK+T L+++
Sbjct: 328 TTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT 387
Query: 145 GQEEPDSGNVIKAKSNMK----------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194
+P G ++ + I+ +SQ + S T+R+
Sbjct: 388 RAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHL-FSATLRDN------------- 433
Query: 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254
+ A +A D+ L+ ++LQ+ V L+ L L LG +G
Sbjct: 434 ----LLLAAPNASDE-----ALI---EVLQQ----VGLEKLLEDDKGLNAWLG----EGG 473
Query: 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
R + S G Q R+ + + LL D LLLLDEPT LD +T
Sbjct: 474 RQL---SGGEQRRLGIARALLHDAPLLLLDEPTEGLDAET 510
|
Length = 574 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 5e-12
Identities = 60/229 (26%), Positives = 97/229 (42%), Gaps = 45/229 (19%)
Query: 432 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--- 488
E R L N +L I G+ +IG NG GKSTLL I G KP G++L+ +V
Sbjct: 15 TPLEKRAL-NGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKK 73
Query: 489 --------LPNYFEQNQAEALDLDKTVLETVAEAA----------------EDWRIDDIK 524
L F Q+ + T+ E +A A + +
Sbjct: 74 SVAKRANLLARVF-QDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLA 132
Query: 525 GL-LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML- 582
L LG N L ++ LLSGG++ L+ + P +L+LDE T LD + E +
Sbjct: 133 RLGLGLEN----RLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVM 188
Query: 583 ---EEAISEYKGTVITVSHDRYFVKQIV---NRVVEVKGSN-LQDYAGD 624
+ + E+K T + V+H+ ++ + NR++ + + D G+
Sbjct: 189 ELTAKIVEEHKLTTLMVTHN---MEDALDYGNRLIMLHSGKIVLDVTGE 234
|
Length = 263 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 5e-12
Identities = 60/211 (28%), Positives = 90/211 (42%), Gaps = 52/211 (24%)
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MGLEKPRG---GEVL 482
+++ F Y D ++ IE A IGP+GCGKST L+L M P GE+
Sbjct: 7 RDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIR 66
Query: 483 LGEHNVL-------------------PNYFE----QNQAEALDLD---------KTVLET 510
+ N+ PN F +N A L ++ + V ET
Sbjct: 67 IDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEET 126
Query: 511 VAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570
+ AA W D++K D L LSGG++ RL + M ++L++DEP
Sbjct: 127 LKGAAL-W--DEVK----------DKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEP 173
Query: 571 TNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
+ LD S +EE I E K T++ V+H+
Sbjct: 174 ASALDPISTAKVEELIHELKKDYTIVIVTHN 204
|
Length = 250 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 5e-12
Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 31/194 (15%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+++ +++K Y L +V++E +KG VG +G NGAGK+T ++II G PDSG+V
Sbjct: 3 IRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQV- 61
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
L EV + E + +M V++ L+ + G+LL
Sbjct: 62 ---CGEDVLQNPKEVQRNIGYLPEHNPLY-LDM-------YVREYLQFIAGIYGMKGQLL 110
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
QR + + L L + K + +L S G++ R+ L + L+ D
Sbjct: 111 K-----QRVEEMIELVGLRPEQHKKIGQL--------------SKGYRQRVGLAQALIHD 151
Query: 278 PDLLLLDEPTNHLD 291
P +L+LDEPT LD
Sbjct: 152 PKVLILDEPTTGLD 165
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 65.2 bits (160), Expect = 6e-12
Identities = 47/199 (23%), Positives = 80/199 (40%), Gaps = 30/199 (15%)
Query: 425 VTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ KN+ Y + + +I+ GEK I+G G GKS+LL + L + G +L
Sbjct: 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSIL 62
Query: 483 LGEHNVL-----------------PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKG 525
+ ++ P F LD E W+ + G
Sbjct: 63 IDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDP-----FGEYSDEELWQALERVG 117
Query: 526 LLGRCNFKADMLDRKVSL----LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM 581
L LD V LS G++ L + +++ S +LVLDE T +D + +
Sbjct: 118 LKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDAL 177
Query: 582 LEEAI-SEYKG-TVITVSH 598
+++ I +K TV+T++H
Sbjct: 178 IQKTIREAFKDCTVLTIAH 196
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 6e-12
Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 27/201 (13%)
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAE 499
+L++ GE + GP+G GKSTLL+ + P G++L+ + E
Sbjct: 27 LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPRE 86
Query: 500 ALDLDKTV----------------LETVAEAAED--WRIDD----IKGLLGRCNFKADML 537
L++ +T L+ VAE + LL R N +
Sbjct: 87 VLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLW 146
Query: 538 DRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GT-V 593
+ SGGE+ R+ + F+V LL LDEPT LD ++ ++ E I E K G +
Sbjct: 147 SLAPATFSGGEQQRVNIARGFIVDYPILL-LDEPTASLDATNRAVVVELIREAKARGAAL 205
Query: 594 ITVSHDRYFVKQIVNRVVEVK 614
+ + HD + + +R+++V
Sbjct: 206 VGIFHDEEVREAVADRLLDVS 226
|
Length = 235 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 7e-12
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVII 312
V S G + R++L + LL +PDLLLLDEPT+ LD + E L L ++ ++I+
Sbjct: 77 YVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIV 136
Query: 313 SHDRAFLDQLCTKIV 327
+HD + +++
Sbjct: 137 THDPELAELAADRVI 151
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 7e-12
Identities = 59/229 (25%), Positives = 90/229 (39%), Gaps = 73/229 (31%)
Query: 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LPNY--- 492
L N NL + E ++IGPNG GK+T+ + G KP GG +LL ++ LP +
Sbjct: 19 LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIA 78
Query: 493 --------------------------------------------FEQNQAEALDLDKTVL 508
F + ++EALD T L
Sbjct: 79 RMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWL 138
Query: 509 ETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568
E V GLL + +R+ L+ G++ RL + MV +L+LD
Sbjct: 139 ERV-------------GLL-------EHANRQAGNLAYGQQRRLEIARCMVTQPEILMLD 178
Query: 569 EPTNHLDIPSKEMLEEAIS----EYKGTVITVSHDRYFVKQIVNRVVEV 613
EP L+ + L+E I+ E+ TV+ + HD V I +R+ V
Sbjct: 179 EPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVV 227
|
Length = 255 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 8e-12
Identities = 31/68 (45%), Positives = 44/68 (64%)
Query: 88 NTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147
N SS+S V+L ISKS+ G V+ ++ + GE + L+G +G GKTT LR+IAG E
Sbjct: 5 NKQPSSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE 64
Query: 148 EPDSGNVI 155
PDSG ++
Sbjct: 65 TPDSGRIM 72
|
Length = 375 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 8e-12
Identities = 60/244 (24%), Positives = 105/244 (43%), Gaps = 37/244 (15%)
Query: 98 VKLENISKSY-------KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD 150
+++E++SK++ + VLK+V+ V GE V L G +GAGK+T L+ + PD
Sbjct: 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD 61
Query: 151 SGNVIKAKSNMKIAFLSQ--EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
SG I + L+Q EV R ++S F + RV ALE +
Sbjct: 62 SGR-ILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLR------VIPRVS-ALEVVAE 113
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
+ G + R + + + ++ L P A+FS G Q R+
Sbjct: 114 PLLERGVPREA--ARARARELLARLNIPERLWHLPP-------------ATFSGGEQQRV 158
Query: 269 SLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQLCT 324
++ + + D +LLLDEPT LD +E + + ++ I HD + +
Sbjct: 159 NIARGFIADYPILLLDEPTASLDAANRQVVVELIAE-AKARGAALIGIFHDEEVRELVAD 217
Query: 325 KIVE 328
++++
Sbjct: 218 RVMD 221
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 9e-12
Identities = 53/217 (24%), Positives = 95/217 (43%), Gaps = 65/217 (29%)
Query: 98 VKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQ----LRIIAGQEEPDS 151
++ +N+S Y+ VLK++++ +K GEKVG+VG G+GK++ R++ E S
Sbjct: 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV----ELSS 58
Query: 152 GNVI------------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKE--EMEIAGKLE 197
G+++ +S +I+ + Q+ V S T+R + F E + E+ LE
Sbjct: 59 GSILIDGVDISKIGLHDLRS--RISIIPQD-PVLFSGTIRSN-LDPFGEYSDEELWQALE 114
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
RV L+ V+ + LD V + G+
Sbjct: 115 RVG--LKEFVESL---------------------PGGLDTVV----------EEGGE--- 138
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
+ S G + + L + LL+ +L+LDE T +D +T
Sbjct: 139 -NLSVGQRQLLCLARALLRKSKILVLDEATASVDPET 174
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 9e-12
Identities = 67/242 (27%), Positives = 110/242 (45%), Gaps = 55/242 (22%)
Query: 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MG--LEK 475
SG +V+ ++L Y D + ++ I + TA+IGP+GCGKST L+ I M ++
Sbjct: 35 SGETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDA 94
Query: 476 PR-GGEVLLGEHNVL-------------------PNYFEQN-----------QAEALDLD 504
R GE+ NV PN F ++ Q D+D
Sbjct: 95 ARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDID 154
Query: 505 KTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564
+ V E++ AA W D++K D LD LSGG++ RL + + +
Sbjct: 155 ERVEESLRRAAL-W--DEVK----------DQLDSSGLDLSGGQQQRLCIARAIAPDPEV 201
Query: 565 LVLDEPTNHLD--IPSK--EMLEEAISEYKGTVITVSHDRYFVKQIVNRV-VEVKGSNLQ 619
+++DEP + LD SK +++EE EY TV+ V+H+ +I ++ V + G L
Sbjct: 202 ILMDEPASALDPVATSKIEDLIEELAEEY--TVVIVTHNMQQAARISDKTAVFLTGGELV 259
Query: 620 DY 621
++
Sbjct: 260 EF 261
|
Length = 285 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 1e-11
Identities = 56/230 (24%), Positives = 107/230 (46%), Gaps = 49/230 (21%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-- 154
++ EN+S SY VLKD+++ ++ GEKV +VG +G+GK+T ++++ +P SG +
Sbjct: 329 IEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388
Query: 155 -IKAKSNM-------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
++ +I +SQ+ + S T+RE
Sbjct: 389 DGIDIRDISLDSLRKRIGIVSQDPLL-FSGTIRENI------------------------ 423
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
+GR + ++ + N ++ L G+ G+R V + S G +
Sbjct: 424 -----ALGRPDATDEEIEEALKLANAHEF---IANL--PDGYDTIVGERGV-NLSGGQRQ 472
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314
R+++ + LL++P +L+LDE T+ LD +T ++ L K + +II+H
Sbjct: 473 RLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAH 522
|
Length = 567 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 1e-11
Identities = 54/230 (23%), Positives = 92/230 (40%), Gaps = 67/230 (29%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIK 156
+++++ S G +LK V +KKGE L+G NG+GK+T + I G E G
Sbjct: 2 EIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEG---- 57
Query: 157 AKSNMKIAFLSQEF-EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
+I F ++ ++ R AF+ EI G V + D + R
Sbjct: 58 -----EILFKGEDITDLPPEERARLGIFLAFQYPPEIPG------------VKNADFL-R 99
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
++E FS G + R + ++LL
Sbjct: 100 YVNE---------------------------------------GFSGGEKKRNEILQLLL 120
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLE---GYLGKQDVPMVIISHDRAFLDQL 322
+PDL +LDEP + LD+D + + L ++ ++II+H + LD +
Sbjct: 121 LEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYI 170
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 1e-11
Identities = 50/201 (24%), Positives = 75/201 (37%), Gaps = 39/201 (19%)
Query: 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
+++ +S Y L DV++ V+ G V L+G NGAGK+T ++ G +
Sbjct: 1 ALEVAGLSFRYGARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI-- 58
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDL--MG 214
+A + R R L R+ + D+DL
Sbjct: 59 -----SVA------GHDLRRAPRA--------------ALARLGVVFQQPTLDLDLSVRQ 93
Query: 215 RLLDEFDL--LQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
L L L R + L A+ LG D+ V + G + R+ + +
Sbjct: 94 NLRYHAALHGLSRAEARARIAELLAR-------LGLAERADDK-VRELNGGHRRRVEIAR 145
Query: 273 ILLQDPDLLLLDEPTNHLDLD 293
LL P LLLLDEPT LD
Sbjct: 146 ALLHRPALLLLDEPTVGLDPA 166
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 1e-11
Identities = 55/201 (27%), Positives = 91/201 (45%), Gaps = 32/201 (15%)
Query: 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+ +N+ Y + N NL I +GE +IGP+G GK+T +K+I L +P GE+ +
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60
Query: 484 GEHNVLPNYFEQN------------QAEALDLDKTVLETVA---------EAAEDWRIDD 522
++ EQ+ Q L TV E +A + R D+
Sbjct: 61 DGEDIR----EQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADE 116
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML 582
+ L+G A+ DR LSGG++ R+ + + LL++DEP LD +++ L
Sbjct: 117 LLALVGLD--PAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQL 174
Query: 583 EEAI----SEYKGTVITVSHD 599
+E E T++ V+HD
Sbjct: 175 QEEFKRLQQELGKTIVFVTHD 195
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 65/245 (26%), Positives = 103/245 (42%), Gaps = 68/245 (27%)
Query: 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++ G E I K + DV+ +V++GE ++G++G+GK+T LR I EP SG
Sbjct: 21 LAKGKSKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGK 80
Query: 154 VI---KAKSNM-----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG--KLE 197
V+ + + M KI+ + Q F + RTV E AF +E+ G + E
Sbjct: 81 VLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLEN--VAFG--LEVQGVPRAE 136
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
R ++A E+ ++L+G L +
Sbjct: 137 REERAAEA----LELVG-------------------------------LE---GWEHKYP 158
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMV 310
S G Q R+ L + L DPD+LL+DE + LD D + L+ L K +V
Sbjct: 159 DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKT---IV 215
Query: 311 IISHD 315
I+HD
Sbjct: 216 FITHD 220
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 1e-11
Identities = 64/215 (29%), Positives = 94/215 (43%), Gaps = 53/215 (24%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MGLEKPRG---G 479
+ +K+L Y NL IE TA IGP+GCGKST+L+ + M P G
Sbjct: 5 IDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEG 64
Query: 480 EVLLGEHNVL-------------------PNYF-----EQNQAEALDLD----KTVLETV 511
EVLL ++ PN F N L L+ K L+ +
Sbjct: 65 EVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDEL 124
Query: 512 AE----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLV 566
E A W +++K D LD+ LSGG++ RL + + V+P LL
Sbjct: 125 VEKSLRGANLW--NEVK----------DRLDKPGGGLSGGQQQRLCIARAIAVEPDVLL- 171
Query: 567 LDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
+DEP + LD S +E+ I+E K T++ V+H+
Sbjct: 172 MDEPCSALDPISTLAIEDLINELKQDYTIVIVTHN 206
|
Length = 258 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 1e-11
Identities = 66/213 (30%), Positives = 93/213 (43%), Gaps = 56/213 (26%)
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMGLEKPRGGE 480
+ L F Y D + +L E+ + TA+IGP+GCGKST L+ LI G GE
Sbjct: 10 RGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVE--GE 67
Query: 481 VLLGEHNVL-------------------PNYFE----QNQAEALDL----DKTVLETVAE 513
+LL N+ PN F +N A L + DK L E
Sbjct: 68 ILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVE 127
Query: 514 ----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLD 568
A W D++K D L LSGG++ RL + + V+P LL +D
Sbjct: 128 RSLRHAALW--DEVK----------DRLHESALGLSGGQQQRLCIARALAVEPEVLL-MD 174
Query: 569 EPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
EP + LD + + +EE I E K T+I V+H+
Sbjct: 175 EPASALDPIATQKIEELIHELKARYTIIIVTHN 207
|
Length = 253 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 1e-11
Identities = 62/236 (26%), Positives = 103/236 (43%), Gaps = 28/236 (11%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE--KPRGGEV 481
+++IK+L ED+ + NL + GE AI+GPNG GKSTL + G E + GG V
Sbjct: 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV 60
Query: 482 LLGEHNVLPNYFEQNQAEALDL------------DKTVLETVAEAAEDWR---------- 519
++L E E + + ++ L+T A +R
Sbjct: 61 EFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDF 120
Query: 520 IDDIKGLLGRCNFKADMLDRKVSL-LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 578
D ++ + D+L R V++ SGGEK R + V L +LDE + LDI +
Sbjct: 121 QDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDA 180
Query: 579 KEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSL 631
+++ + ++ K + I V+H + + I V V +GD+ V+ L
Sbjct: 181 LKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQL 236
|
Length = 248 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 1e-11
Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 39/207 (18%)
Query: 425 VTIKNLEFGY------EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
+ ++N+ + Y E R LF+ NLTIE G TA IG G GKST+++L+ GL P
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFD-VNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61
Query: 479 GEVLLGEHNV-----------------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRID 521
G V + + + L F ++Q ++TVL+ VA +++ +
Sbjct: 62 GSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQL----FEETVLKDVAFGPQNFGVS 117
Query: 522 DIKGL------LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575
+ L + ++ LSGG+ R+A + +LVLDEPT LD
Sbjct: 118 QEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177
Query: 576 IPS--KEMLE--EAISEYKGTVITVSH 598
P KE++ + + + T++ V+H
Sbjct: 178 -PKGRKELMTLFKKLHQSGMTIVLVTH 203
|
Length = 280 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 62.8 bits (154), Expect = 2e-11
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDR 316
S G + R++L + LL DP+LL+LDEPT+ LD ++ L K+ +++ SH
Sbjct: 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL 155
Query: 317 AFLDQLCTKIV 327
++LC ++
Sbjct: 156 EEAERLCDRVA 166
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 2e-11
Identities = 52/232 (22%), Positives = 111/232 (47%), Gaps = 51/232 (21%)
Query: 98 VKLENISKSYK---GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
VK +N++ +Y VL+DV++ + GE LVG +G+GK+T + ++ +P G V
Sbjct: 12 VKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQV 71
Query: 155 I---KAKS-------NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204
+ K S + K++ + QE V +R++++ IA L+
Sbjct: 72 LLDGKPISQYEHKYLHSKVSLVGQE-PVLFARSLQD----------NIAYGLQSC----- 115
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
F+ ++ AQ + + +S+L G+ + G++ + S G
Sbjct: 116 --------------SFECVKEAAQKAHAHSF---ISEL--ASGYDTEVGEK-GSQLSGGQ 155
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG--YLGKQDVPMVIISH 314
+ R+++ + L+++P +L+LDE T+ LD ++ + ++ Y + +++I+H
Sbjct: 156 KQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAH 207
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 2e-11
Identities = 47/204 (23%), Positives = 79/204 (38%), Gaps = 61/204 (29%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI--- 155
++ N++ Y +L+ V+ EV KGE ++G NG GKTT L+ + G SG++
Sbjct: 2 EVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDG 61
Query: 156 ----KAKSNMK----IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
K + + IA++ Q E+ TV E ++ +
Sbjct: 62 EDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLA-----------ALPRRSRKI 110
Query: 208 DDMDLMGRLLDEF----DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
D + + F ++L R+ GD S G
Sbjct: 111 PD-----EIYELFPVLKEMLGRRG-------------------------GD-----LSGG 135
Query: 264 WQMRMSLGKILLQDPDLLLLDEPT 287
Q ++++ + L+ P LLLLDEPT
Sbjct: 136 QQQQLAIARALVTRPKLLLLDEPT 159
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 2e-11
Identities = 50/206 (24%), Positives = 87/206 (42%), Gaps = 42/206 (20%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ + +L + D + + +L++ G ++GPNG GK+TLL+ I G P G VL+
Sbjct: 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVA 63
Query: 485 EHNV--------------LPNYFEQNQAEALDLDKTVLETV-------------AEAAED 517
+V +P Q +L + V + V +
Sbjct: 64 GDDVEALSARAASRRVASVP------QDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDR 117
Query: 518 WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
++ G F DR V+ LSGGE+ R+ + + + + +L+LDEPT LDI
Sbjct: 118 AAVERAMERTGVAQF----ADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDIN 173
Query: 578 SK----EMLEEAISEYKGTVITVSHD 599
+ E++ + + K T + HD
Sbjct: 174 HQVRTLELVRRLVDDGK-TAVAAIHD 198
|
Length = 402 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 59/199 (29%), Positives = 88/199 (44%), Gaps = 37/199 (18%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN---- 496
N +L I G+ A++GP+G GK+TLL++I GLE G + +V +
Sbjct: 19 NDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGF 78
Query: 497 --QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKV------------- 541
Q AL TV + +A + L R A + KV
Sbjct: 79 VFQHYALFRHMTVFDNIAFG--------LTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA 130
Query: 542 ----SLLSGGEKARLAFCKFM-VKPSTLLVLDEPTNHLDIP-SKEM---LEEAISEYKGT 592
+ LSGG+K R+A + + V+P LL LDEP LD KE+ L + E K T
Sbjct: 131 DRYPAQLSGGQKQRVALARALAVEPQILL-LDEPFGALDAQVRKELRRWLRQLHEELKFT 189
Query: 593 VITVSHDRYFVKQIVNRVV 611
+ V+HD+ ++ +RVV
Sbjct: 190 SVFVTHDQEEAMEVADRVV 208
|
Length = 353 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 2e-11
Identities = 63/213 (29%), Positives = 98/213 (46%), Gaps = 26/213 (12%)
Query: 424 VVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
++ +++L F Y+D +A +L+I G KTA++GPNG GKSTLL + G+ P+ G
Sbjct: 4 IIEVEDLHFRYKDG---TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRG 60
Query: 480 EV-LLGEHNVLPNYFEQNQAEAL---DLD-----KTVLETVAEAAEDWRIDDIKGLLGRC 530
V ++G N L D D TV + VA + +D + R
Sbjct: 61 RVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDK-DEVERRV 119
Query: 531 N--FKA----DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEE 584
KA D D+ LS G+K R+A + ++VLDEP +LD +E L E
Sbjct: 120 EEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLME 179
Query: 585 AISEYKG---TVITVSHDRYFVKQIVNRVVEVK 614
+ TVI +HD + ++V+ +K
Sbjct: 180 ILDRLHNQGKTVIVATHDVDLAAEWADQVIVLK 212
|
Length = 274 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 2e-11
Identities = 62/249 (24%), Positives = 109/249 (43%), Gaps = 65/249 (26%)
Query: 98 VKLENISKSY----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+KL NI+K + K + L +V+ V G+ G++G +GAGK+T +R + E P SG+
Sbjct: 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGS 61
Query: 154 VI---------------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLER 198
VI KA+ + + F Q F + SRTV +A LE
Sbjct: 62 VIVDGQDLTTLSNSELTKARRQIGMIF--QHFNLLSSRTVFG----------NVALPLE- 108
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
L + D + KV++L+ +G D D +
Sbjct: 109 ------------------------LDNTPK----DEIKRKVTELLALVGLG-DKHDSYPS 139
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISH 314
+ S G + R+++ + L +P +LL DE T+ LD T +E L+ + + +++I+H
Sbjct: 140 NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITH 199
Query: 315 DRAFLDQLC 323
+ + ++C
Sbjct: 200 EMDVVKRIC 208
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 3e-11
Identities = 56/239 (23%), Positives = 101/239 (42%), Gaps = 54/239 (22%)
Query: 98 VKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+K EN+ K Y+ VLK V+ + KGE V +VG +G+GK+T L ++ G + P SG
Sbjct: 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE 61
Query: 154 VIKAKSNMKIAFLSQEFEVSMSRTVREE-------FMSAFKEEMEIAGKLERVQKALESA 206
V+ F Q +S R + F+ F + LE V
Sbjct: 62 VL---------FNGQSLS-KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENV------- 104
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDT---LDAKVSKLMPELGFTADDGDRLVASFSSG 263
M L+ + + + K +A + L+ +++ EL S G
Sbjct: 105 -----AMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSEL--------------SGG 145
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318
+ R+++ + L+ P L+L DEPT +LD + + + + + + ++++HD
Sbjct: 146 ERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLEL 204
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 3e-11
Identities = 61/220 (27%), Positives = 94/220 (42%), Gaps = 48/220 (21%)
Query: 77 FENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGK 136
E K N + SS + + N+ G VLK++ +++KGE + + G G+GK
Sbjct: 21 LEKAKQENN--DRKHSSDDNNLFFSNLC--LVGAPVLKNINLKIEKGEMLAITGSTGSGK 76
Query: 137 TTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196
T+ L +I G+ EP G K K + +I+F SQ F M T++E
Sbjct: 77 TSLLMLILGELEPSEG---KIKHSGRISFSSQ-FSWIMPGTIKENI-------------- 118
Query: 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT--ADDGD 254
+ G DE+ R V L+ ++K PE T + G
Sbjct: 119 ---------------IFGVSYDEY----RYKSVVKACQLEEDITKF-PEKDNTVLGEGGI 158
Query: 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
L S G + R+SL + + +D DL LLD P +LD+ T
Sbjct: 159 TL----SGGQRARISLARAVYKDADLYLLDSPFGYLDVFT 194
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 4e-11
Identities = 47/213 (22%), Positives = 94/213 (44%), Gaps = 52/213 (24%)
Query: 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTV 178
E+ GE +G++G NG GKTT ++++AG +PD G+ K + K ++S +++ TV
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDG----TV 418
Query: 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238
+ SA + A S+ +++ L NL+
Sbjct: 419 EDLLRSAIRS-------------AFGSSYFKTEIVKPL--------------NLE----- 446
Query: 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLD----T 294
L+ +R V S G R+++ L ++ DL LLDEP+ +LD++
Sbjct: 447 --DLL----------ERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIV 494
Query: 295 IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
+ + ++ + +++ HD +D + +++
Sbjct: 495 AKVIRRFIENNEKTALVVDHDIYMIDYVSDRLI 527
|
Length = 591 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 4e-11
Identities = 57/205 (27%), Positives = 88/205 (42%), Gaps = 27/205 (13%)
Query: 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL------ 482
+L F Y+D + NL T ++G NGCGKSTL + GL +P+ G VL
Sbjct: 6 DLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPL 65
Query: 483 -------LGEHNVLPNYFE--QNQAEALDLDKTVLET-----VAEAAEDWRIDDIKGLLG 528
L + F+ + Q D+D + + V EA R+D+ L+
Sbjct: 66 DYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVD 125
Query: 529 RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE 588
+F+ + + LS G+K R+A +V + L+LDEPT LD + + I
Sbjct: 126 AQHFR----HQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRR 181
Query: 589 YKGT---VITVSHDRYFVKQIVNRV 610
VI SHD + +I + V
Sbjct: 182 IVAQGNHVIISSHDIDLIYEISDAV 206
|
Length = 271 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 4e-11
Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 22/173 (12%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN---QAEA 500
NLT+E GE ++GP+GCGK+TLL LI G + G + L V E+ Q E
Sbjct: 21 NLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEG 80
Query: 501 LDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSL----------LSGGEKA 550
L + V + VA + ++ ++ R ML +KV L LSGG++
Sbjct: 81 LLPWRNVQDNVAFGLQLAGVEKMQ----RLEIAHQML-KKVGLEGAEKRYIWQLSGGQRQ 135
Query: 551 RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI----SEYKGTVITVSHD 599
R+ + + LL+LDEP LD ++E ++ + E V+ ++HD
Sbjct: 136 RVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHD 188
|
Length = 255 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 4e-11
Identities = 57/243 (23%), Positives = 102/243 (41%), Gaps = 45/243 (18%)
Query: 420 SGRSVVTI--KNLE-FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476
+ VTI ++LE + + L N T+ G++ A++GP+G GK++LL ++G
Sbjct: 343 ASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPY 402
Query: 477 RGGEVLLGEHNVLPNYFEQNQAEALDLDK-----------------TVLETVAEAAEDWR 519
+G ++ N E + LD + T+ + V D
Sbjct: 403 QG--------SLKINGIELRE---LDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDAS 451
Query: 520 IDDIKGLLGRCNFK------ADMLDRKVS----LLSGGEKARLAFCKFMVKPSTLLVLDE 569
+ ++ L LD + LS G+ RLA + +++P LL+LDE
Sbjct: 452 DEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDE 511
Query: 570 PTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQ 627
PT LD S++++ +A++ T + V+H + Q V G +Q GDY +
Sbjct: 512 PTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQ--GDYAE 569
Query: 628 VQS 630
+
Sbjct: 570 LSQ 572
|
Length = 588 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (153), Expect = 5e-11
Identities = 66/241 (27%), Positives = 101/241 (41%), Gaps = 52/241 (21%)
Query: 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK------------ 468
+ ++T ++ Y +L + E TA+IGP+GCGKST L+
Sbjct: 2 AKKIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGV 61
Query: 469 LIMGLEKPRGGEVLLGEHNVL------------PNYFE----QNQAEALDL----DKTVL 508
I G RG + +V+ PN F +N L L DK VL
Sbjct: 62 TITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVL 121
Query: 509 ----ETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPST 563
ET + A W D++K D L LSGG++ R+ + + VKP
Sbjct: 122 DEAVETSLKQAAIW--DEVK----------DHLHESALSLSGGQQQRVCIARVLAVKPDV 169
Query: 564 LLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFVKQIVNRVVEVKGSNLQDY 621
+L LDEPT+ LD S +E + E + T+I V+H + +I ++ NL ++
Sbjct: 170 IL-LDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEF 228
Query: 622 A 622
A
Sbjct: 229 A 229
|
Length = 252 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 5e-11
Identities = 52/193 (26%), Positives = 89/193 (46%), Gaps = 47/193 (24%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEA 500
N A+L +E GE I+G +G GKSTL++L+ L +P GE+L+ ++ + AE
Sbjct: 45 NDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAK----LSAAEL 100
Query: 501 LDL----------------DKTVLETVA--------------EAAEDWRIDDIKGLLGRC 530
+L +TVLE VA E A + ++ GL G
Sbjct: 101 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEAL--ELVGLEGYA 158
Query: 531 NFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD-IPSKEMLEEAI--- 586
D+ + LSGG + R+ + + +L++DE + LD + EM +E +
Sbjct: 159 -------DKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQ 211
Query: 587 SEYKGTVITVSHD 599
++ K T++ ++HD
Sbjct: 212 AKLKKTIVFITHD 224
|
Length = 386 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 6e-11
Identities = 36/173 (20%), Positives = 68/173 (39%), Gaps = 46/173 (26%)
Query: 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTV 178
+ + E +G++G NG GKTT ++++AG +PD G++ +++ Q + TV
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIE--IELDTVSYKPQYIKADYEGTV 78
Query: 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238
R+ S + ++ L +
Sbjct: 79 RDLLSS-------------ITKDFYTHPYFKTEIAKPL---------------------Q 104
Query: 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
+ +++ DR V S G R+++ L +D D+ LLDEP+ +LD
Sbjct: 105 IEQIL----------DREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 6e-11
Identities = 50/207 (24%), Positives = 94/207 (45%), Gaps = 20/207 (9%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ + +L Y + + + ++G +GPNG GKST +K+I G P G V +
Sbjct: 3 IRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVC 62
Query: 485 EHNVLPNYFEQNQA-------EALDLDKTVLETVAEAAEDWRIDD------IKGLLGRCN 531
+VL N E + L LD V E + A + + ++ ++
Sbjct: 63 GEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVG 122
Query: 532 FKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM----LEEAIS 587
+ + +K+ LS G + R+ + ++ +L+LDEPT LD P++ + + + I
Sbjct: 123 LRPEQ-HKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD-PNQLVEIRNVIKNIG 180
Query: 588 EYKGTVITVSHDRYFVKQIVNRVVEVK 614
+ K T+I +H V+ I +RV+ +
Sbjct: 181 KDK-TIILSTHIMQEVEAICDRVIIIN 206
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 6e-11
Identities = 65/214 (30%), Positives = 97/214 (45%), Gaps = 58/214 (27%)
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMGLEKPRGGE 480
KNL Y ++ N NL I + TA+IGP+GCGKST L+ LI ++ GE
Sbjct: 8 KNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIE--GE 65
Query: 481 VLLGEHNVL-------------------PNYFEQNQAEAL-------------DLDKTVL 508
VLL N+ PN F + + + +LDK V
Sbjct: 66 VLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVE 125
Query: 509 ETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVL 567
+ +AA W D++K D L + LSGG++ RL + + VKP +L +
Sbjct: 126 WALKKAAL-W--DEVK----------DDLKKSALKLSGGQQQRLCIARTIAVKPDVIL-M 171
Query: 568 DEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
DEPT+ LD S +E+ + E K T++ V+H+
Sbjct: 172 DEPTSALDPISTLKIEDLMVELKKEYTIVIVTHN 205
|
Length = 251 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 7e-11
Identities = 63/230 (27%), Positives = 94/230 (40%), Gaps = 65/230 (28%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
L +SK Y TVL + + G+ V +VG +G GK+T LR++AG E P +G +
Sbjct: 15 LNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL----- 69
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM---GRL 216
+AG L A +D LM RL
Sbjct: 70 --------------------------------LAG-----TAPLAEAREDTRLMFQDARL 92
Query: 217 L------DEFDL-LQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
L D L L+ + + L L A +G AD + A+ S G + R++
Sbjct: 93 LPWKKVIDNVGLGLKGQWRDAALQALAA--------VGL-ADRANEWPAALSGGQKQRVA 143
Query: 270 LGKILLQDPDLLLLDEPTNHLD-LDTIEW---LEGYLGKQDVPMVIISHD 315
L + L+ P LLLLDEP LD L IE +E + +++++HD
Sbjct: 144 LARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD 193
|
Length = 257 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (152), Expect = 7e-11
Identities = 62/242 (25%), Positives = 113/242 (46%), Gaps = 33/242 (13%)
Query: 416 ERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475
E G+S V I L D+ + + I I+GP+G GKSTLLK++ L +
Sbjct: 2 EAGKSAEDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE 61
Query: 476 PRGGEVLLGEHNVLPNYFEQN--QAEALDLDK---------------TVLETVAEAAEDW 518
++ + + VL YF ++ Q +A+ L K ++ + +A +
Sbjct: 62 IYDSKIKV-DGKVL--YFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSH 118
Query: 519 RIDD---IKGLLGRCNFKA-------DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568
I + IK ++ C K D L+ S LSGG++ RL + + +L++D
Sbjct: 119 GIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMD 178
Query: 569 EPTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626
EPT+ +DI + + +E+ I+E K ++ VSH+ V ++ + V + L ++ G N
Sbjct: 179 EPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEW-GSSN 237
Query: 627 QV 628
++
Sbjct: 238 EI 239
|
Length = 257 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 64.6 bits (157), Expect = 7e-11
Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 24/188 (12%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503
+L I +G+ I+G NGCGKSTL KL GL P+ GE+LL V ++ + DL
Sbjct: 362 DLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVS----ADSRDDYRDL 417
Query: 504 DKTVLETV--------AEAAEDWRIDDIKGLLGRCNF--KADMLDRKVSL---LSGGEKA 550
+ + E +D+ + L R K + D S LS G++
Sbjct: 418 FSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQK 477
Query: 551 RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML-EEAISEYK---GTVITVSH-DRYFVKQ 605
RLA ++ +L+ DE D K EE + + K T+I +SH D+YF +
Sbjct: 478 RLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYF--E 535
Query: 606 IVNRVVEV 613
+ ++++++
Sbjct: 536 LADQIIKL 543
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 7e-11
Identities = 59/221 (26%), Positives = 95/221 (42%), Gaps = 55/221 (24%)
Query: 420 SGRSVV-TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIM 471
+ + VV +NL Y + NL I E TAIIGP+GCGKST +K L+
Sbjct: 19 APKKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVP 78
Query: 472 GLEKPRGGEVLLGEHNVL-------------------PNYFEQNQAEALDL--------D 504
++ G++L + N+ PN F ++ + + D
Sbjct: 79 SVKT--TGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKD 136
Query: 505 KTVLETVAE----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560
K L+ + E A W D++K D L LSGG++ RL + +
Sbjct: 137 KKTLDEIVEKSLRGAAIW--DELK----------DRLHDNAYGLSGGQQQRLCIARCLAI 184
Query: 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
++++DEPT+ LD S +EE + E K ++I V+H+
Sbjct: 185 EPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHN 225
|
Length = 271 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 1e-10
Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 50/196 (25%)
Query: 108 KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVI-------KA 157
K +L DV+ V+ G+ + ++G +G+GKTT L I+G+ E SG ++
Sbjct: 18 KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPD 77
Query: 158 KSNMKIAFLSQEFEVSMSRTVREE--FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
+ +A++ Q+ + TVRE + + + + R
Sbjct: 78 QFQKCVAYVRQDDILLPGLTVRETLTYTAILR-------------------------LPR 112
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
+ +R + D ++ G LV S G + R+S+ LL
Sbjct: 113 KSSDAIRKKRVEDVLLRDLALTRI-------------GGNLVKGISGGERRRVSIAVQLL 159
Query: 276 QDPDLLLLDEPTNHLD 291
DP +L+LDEPT+ LD
Sbjct: 160 WDPKVLILDEPTSGLD 175
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 1e-10
Identities = 55/225 (24%), Positives = 95/225 (42%), Gaps = 47/225 (20%)
Query: 100 LENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ ++S SY K + L+DV+ + GE V ++G +G GKTT L +IAG P G++
Sbjct: 6 VSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLN 65
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
+I E V +++ + + +L ++KA
Sbjct: 66 --GRRIEGPGAERGVVFQNEALLPWLNV-IDNVAFGLQLRGIEKA--------------- 107
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
QR+ A +++ +G + + S G + R+ + + L +
Sbjct: 108 ------QRREIA----------HQMLALVGL-EGAEHKYIWQLSGGMRQRVGIARALAVE 150
Query: 278 PDLLLLDEPTNHLDLDTIEWLEGYL-------GKQDVPMVIISHD 315
P LLLLDEP LD T E ++ L GKQ +++I+HD
Sbjct: 151 PQLLLLDEPFGALDALTREQMQELLLDLWQETGKQ---VLLITHD 192
|
Length = 259 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 1e-10
Identities = 52/218 (23%), Positives = 91/218 (41%), Gaps = 44/218 (20%)
Query: 77 FENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGK 136
FE K +NK + G+ N S VLK+++++++KG+ + + G G+GK
Sbjct: 410 FEKIKQNNK--ARKQPNGDDGLFFSNFS--LYVTPVLKNISFKLEKGQLLAVAGSTGSGK 465
Query: 137 TTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196
++ L +I G+ EP G K K + +I+F Q M T+++
Sbjct: 466 SSLLMMIMGELEPSEG---KIKHSGRISFSPQ-TSWIMPGTIKDNI-------------- 507
Query: 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256
+ G DE+ R + L+ ++ + +G
Sbjct: 508 ---------------IFGLSYDEY----RYTSVIKACQLEEDIALFPEKDKTVLGEGG-- 546
Query: 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
+ S G + R+SL + + +D DL LLD P HLD+ T
Sbjct: 547 -ITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVT 583
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 1e-10
Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 27/200 (13%)
Query: 424 VVTIKNLEFGYEDRL-LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ ++ L + Y D N+ I++GE TAI+G NG GKSTL + + G+ KP G +L
Sbjct: 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIL 64
Query: 483 LGEHNVLPNY-----FEQNQAEAL---DLDK-----TVLETVAEAA------EDWRIDDI 523
+ +Y + ++ + D D +V + V+ A ED +
Sbjct: 65 FDGKPI--DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRV 122
Query: 524 KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD-IPSKEML 582
L R + D+ LS G+K R+A +V +LVLDEPT LD + E++
Sbjct: 123 DNALKRTGI-EHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM 181
Query: 583 EEAISEYKG---TVITVSHD 599
+ + K T+I +HD
Sbjct: 182 KLLVEMQKELGLTIIIATHD 201
|
Length = 283 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 50/207 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
++ EN++ Y +L D++ + G+ L+G NG GK+T L+ A P SG V
Sbjct: 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLG 62
Query: 155 ---IKAKSN----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
I S+ ++A L Q TVRE + A+ G+ +
Sbjct: 63 DKPISMLSSRQLARRLALLPQHHLTPEGITVRE--LVAY-------GRSPWL-------- 105
Query: 208 DDMDLMGRLLDEFD--LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
L GRL E D + + + ++ L DR + S G +
Sbjct: 106 ---SLWGRLSAE-DNARVNQAMEQTRINHL-----------------ADRRLTDLSGGQR 144
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDL 292
R L +L QD ++LLDEPT +LD+
Sbjct: 145 QRAFLAMVLAQDTPVVLLDEPTTYLDI 171
|
Length = 255 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 60/261 (22%), Positives = 101/261 (38%), Gaps = 72/261 (27%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++L I+ Y L D+T + +GE + L+G +GAGK++ LR++ E P SG + A
Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62
Query: 158 KSNM---------KIAFLSQEFEVSM---------SRTVREEFMSAFKEEMEIAGKLERV 199
++ I L + V M TV++ + A + G +
Sbjct: 63 GNHFDFSKTPSDKAIRELRR--NVGMVFQQYNLWPHLTVQQNLIEA---PCRVLGLSK-- 115
Query: 200 QKALESAVDDMDLMGRL-LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
+AL A L+ RL L + DR
Sbjct: 116 DQALARA---EKLLERLRLKPY--------------------------------ADRFPL 140
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVI 311
S G Q R+++ + L+ +P +LL DEPT LD + I L + VI
Sbjct: 141 HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE----TGITQVI 196
Query: 312 ISHDRAFLDQLCTKIVETEMG 332
++H+ + +++V E G
Sbjct: 197 VTHEVEVARKTASRVVYMENG 217
|
Length = 242 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 2e-10
Identities = 60/207 (28%), Positives = 90/207 (43%), Gaps = 60/207 (28%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503
+L I GE +IG +G GKSTL++ I LE+P G VL+ ++ AL
Sbjct: 25 SLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLT----------ALSE 74
Query: 504 D---------------------KTVLETVA---EAAEDWRIDDIK----------GLLGR 529
+TV + VA E A +IK GL
Sbjct: 75 KELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA-GTPKAEIKARVTELLELVGL--- 130
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNHLDIPSK-----EMLE 583
+D DR + LSGG+K R+A + + P LL DE T+ LD P+ E+L+
Sbjct: 131 ----SDKADRYPAQLSGGQKQRVAIARALASNPKVLLC-DEATSALD-PATTRSILELLK 184
Query: 584 EAISEYKGTVITVSHDRYFVKQIVNRV 610
+ E T++ ++H+ VK+I +RV
Sbjct: 185 DINRELGLTIVLITHEMDVVKRICDRV 211
|
Length = 343 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 2e-10
Identities = 57/229 (24%), Positives = 104/229 (45%), Gaps = 48/229 (20%)
Query: 102 NISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
N+ K Y+ VL +V++ + +GE + +VG +G+GK+T L ++ G + P SG+VI
Sbjct: 10 NLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVI-- 67
Query: 158 KSNMKIAFLSQEFEVSMSRTVREE-------FMSAFKEEMEIAGKLERVQKALESAVDDM 210
F Q +S + E F+ F + LE V L
Sbjct: 68 -------FNGQPMS-KLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPL------- 112
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
L+G+ ++ A+ +++ +++ +G R + S G + R+++
Sbjct: 113 -LIGK--------KKPAEI------NSRALEMLAAVGLEHRANHR-PSELSGGERQRVAI 156
Query: 271 GKILLQDPDLLLLDEPTNHLDL---DTIEWLEGYLG-KQDVPMVIISHD 315
+ L+ +P L+L DEPT +LD D+I L G L Q ++++HD
Sbjct: 157 ARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHD 205
|
Length = 233 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 2e-10
Identities = 73/245 (29%), Positives = 111/245 (45%), Gaps = 29/245 (11%)
Query: 376 LGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGR-SVVTIKNLEFGY 434
LG S R A +K E L EE +E P + + F ER G V +KNL +
Sbjct: 881 LGGEGCSTREERALEKTEPLTEE--MEDPEHPEGINDSFFERELPGLVPGVCVKNLVKIF 938
Query: 435 E--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNY 492
E R +R N+T + TA +G NG GK+T L ++ GL P G VL+G ++ N
Sbjct: 939 EPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNL 998
Query: 493 FEQNQAEALDLDKTVL---ETVAEAAEDWRIDDIKGLLGRCNFKAD-----MLD------ 538
Q+ + +L TVAE I L GR +A ML+
Sbjct: 999 DAVRQSLGMCPQHNILFHHLTVAE-----HILFYAQLKGRSWEEAQLEMEAMLEDTGLHH 1053
Query: 539 ---RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--TV 593
+ LSGG + +L+ V + ++VLDEPT+ +D S+ + + + +Y+ T+
Sbjct: 1054 KRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTI 1113
Query: 594 ITVSH 598
I +H
Sbjct: 1114 IMSTH 1118
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 45/184 (24%)
Query: 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH---------------NVLPNYFE 494
G+ ++GPNG GKST LK++ G KP LG+ + L NYF
Sbjct: 26 GQVLGLVGPNGIGKSTALKILAGKLKPN-----LGKFDDPPDWDEILDEFRGSELQNYFT 80
Query: 495 QNQAEALD--------------LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRK 540
+ + + V E + + E ++D++ L + +LDR
Sbjct: 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRH----VLDRN 136
Query: 541 VSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA-----ISEYKGTVIT 595
+ LSGGE R+A + + + DEP+++LDI K+ L A ++E V+
Sbjct: 137 IDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDI--KQRLNAARLIRELAEDDNYVLV 194
Query: 596 VSHD 599
V HD
Sbjct: 195 VEHD 198
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 2e-10
Identities = 59/220 (26%), Positives = 91/220 (41%), Gaps = 54/220 (24%)
Query: 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMG 472
+ +++ KNL Y ++ ++I + TA+IGP+GCGKSTLL+ LI G
Sbjct: 2 TMEIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPG 61
Query: 473 -------------LEKPRGGEVLLGEH--------NVLPNYFEQNQA---------EALD 502
+ V L N P +N A
Sbjct: 62 CRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKT 121
Query: 503 LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKP 561
LD V +++ AA W D++K D L LSGG++ RL + + V P
Sbjct: 122 LDTIVEKSLKGAAL-W--DEVK----------DRLHDSALSLSGGQQQRLCIARTLAVNP 168
Query: 562 STLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
+L +DEP + LD + +E+ I + K TVI V+H+
Sbjct: 169 EVIL-MDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHN 207
|
Length = 253 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 2e-10
Identities = 58/232 (25%), Positives = 100/232 (43%), Gaps = 25/232 (10%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++++ I K++ GV L + EV+ GE VGL G NGAGK+T ++I+ SG
Sbjct: 2 LEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKIL-------SGVYPHG 54
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
+ +I + + S R + +E+ + +L + +++ L G +
Sbjct: 55 TWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLG--NEITLPGGRM 112
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
++ + +A+ L+ EL AD+ R V + G Q + + K L +
Sbjct: 113 A-YNAMYLRAK------------NLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQ 159
Query: 278 PDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCTKI 326
LL+LDEP++ L E L L V V ISH + +C I
Sbjct: 160 ARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTI 211
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 2e-10
Identities = 63/222 (28%), Positives = 99/222 (44%), Gaps = 53/222 (23%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMGLEKPRGG 479
I+NL+ Y + NL I + TA+IGP+GCGKSTLL+ LI G++ G
Sbjct: 6 IENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKIT--G 63
Query: 480 EVLLGEHNVL------------------PNYFE----QNQAEALDL----DKTVLETVAE 513
++ + ++ PN F +N A L DK VL+ V E
Sbjct: 64 KLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVE 123
Query: 514 ----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569
A W D++K D L LSGG++ RL + + ++++DE
Sbjct: 124 RSLRGAALW--DEVK----------DRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDE 171
Query: 570 PTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFVKQIVNR 609
PT+ LD + +EE + E K T++ V+H ++I +R
Sbjct: 172 PTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDR 213
|
Length = 249 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 2e-10
Identities = 67/226 (29%), Positives = 94/226 (41%), Gaps = 53/226 (23%)
Query: 415 PERGR---SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471
PER + G+ V KN Y + + N I TAIIGP+GCGKST L+ I
Sbjct: 27 PERKKVSGGGKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAIN 86
Query: 472 GL-----------------EKPRG---GEVLLGEH--------NVLPNYFEQNQAEALDL 503
+ E G EVLL + N P N A L
Sbjct: 87 RMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRL 146
Query: 504 ----DKTVLETVAE----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFC 555
DK LE + E A W D++ D LD+ LSGG++ RL
Sbjct: 147 HGINDKKQLEEIVEKSLRKAALW--DEVS----------DRLDKNALGLSGGQQQRLCVA 194
Query: 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
+ + +L+LDEPT+ LD + +E+ I E +G T++ V+H+
Sbjct: 195 RTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHN 240
|
Length = 286 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (148), Expect = 2e-10
Identities = 59/221 (26%), Positives = 99/221 (44%), Gaps = 40/221 (18%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMGLE 474
+++ +NL Y D N N+ I + TA+IGP+GCGKST L+ L+ G++
Sbjct: 5 EAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK 64
Query: 475 KPRGGEVLLGEHNVLPNYFEQNQAEALDLDK---TVLET-----------------VAEA 514
G V+ N+ N F + L+L + V +T +
Sbjct: 65 IE--GNVIYEGKNIYSNNF-----DILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGT 117
Query: 515 AEDWRIDDI--KGLLGRC--NFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570
+ ++D+I + L N D L+ LSGG++ RL + + ++++DEP
Sbjct: 118 KDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEP 177
Query: 571 TNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFVKQIVNR 609
T+ LD S +EE I K T+I V+H+ +I +R
Sbjct: 178 TSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDR 218
|
Length = 254 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 3e-10
Identities = 53/196 (27%), Positives = 92/196 (46%), Gaps = 34/196 (17%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV---------LLGEHNVLPNYFE- 494
L+++ GE A++G +GCGKSTL +L++GLE P G V L F
Sbjct: 33 LSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQR---KAFRR 89
Query: 495 ------QNQAEALDLDKTVLETVAE---------AAEDWRIDDIKGLLGRCNFKADMLDR 539
Q+ A++ KTV E + E AE R+ +L + +LD+
Sbjct: 90 DIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAE--RLARASEMLRAVDLDDSVLDK 147
Query: 540 KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK-EMLE--EAISEYKGTV-IT 595
+ LSGG+ R+ + + LL+LDE ++LD+ + ++ + + + GT +
Sbjct: 148 RPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLF 207
Query: 596 VSHDRYFVKQIVNRVV 611
++HD V++ RV+
Sbjct: 208 ITHDLRLVERFCQRVM 223
|
Length = 268 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 3e-10
Identities = 48/205 (23%), Positives = 95/205 (46%), Gaps = 46/205 (22%)
Query: 98 VKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ E++ YK G +L +++ +K GE VG+VG +G+GK+T ++I P++G V+
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 156 KAKSNMKI---AFLSQEFEVSM------SRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
++ + A+L ++ V + +R++R+ A + +ERV +A
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALA-----DPGMSMERVIEA---- 111
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
+L D + +PE G+ G++ A S G +
Sbjct: 112 -------AKLAGAHDFISE-----------------LPE-GYDTIVGEQ-GAGLSGGQRQ 145
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD 291
R+++ + L+ +P +L+ DE T+ LD
Sbjct: 146 RIAIARALIHNPRILIFDEATSALD 170
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 3e-10
Identities = 46/207 (22%), Positives = 88/207 (42%), Gaps = 37/207 (17%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAE- 499
N A+L I +GE I+G +G GKST ++++ L +P G++ + N++ +Q+ E
Sbjct: 10 NDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIM----KQSPVEL 65
Query: 500 ---------------ALDLDKTVLETVAEAAEDWRID---------DIKGLLGRCNFKAD 535
AL T+L+ + E ++ L+G +
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEY--- 122
Query: 536 MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD-IPSKEMLEEAISEYKG--- 591
R LSGG + R+ + + +L++DE + LD + M +E
Sbjct: 123 -EHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQK 181
Query: 592 TVITVSHDRYFVKQIVNRVVEVKGSNL 618
T++ ++HD +I +R+V +K +
Sbjct: 182 TIVFITHDLDEAIRIGDRIVIMKAGEI 208
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (148), Expect = 3e-10
Identities = 59/213 (27%), Positives = 90/213 (42%), Gaps = 52/213 (24%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK--PRG---GEV 481
+ L F Y N+ + + TA+IGP+GCGKST L+ + P GE+
Sbjct: 19 VNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEI 78
Query: 482 LLGEHNV---------------------LPNYFE----QNQAEALDLD----KTVLETVA 512
+L NV PN F +N A L + +++LE
Sbjct: 79 ILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERV 138
Query: 513 E----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568
E A W D++K LG F LSGG++ RL + + +L+ D
Sbjct: 139 ENALRNAALW--DEVKDRLGDLAFN----------LSGGQQQRLCIARALATDPEILLFD 186
Query: 569 EPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
EPT+ LD + +EE IS+ K T++ V+H+
Sbjct: 187 EPTSALDPIATASIEELISDLKNKVTILIVTHN 219
|
Length = 265 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 3e-10
Identities = 60/207 (28%), Positives = 94/207 (45%), Gaps = 39/207 (18%)
Query: 424 VVTIKNLEFGYED------RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477
++ KN+ + YE +L + NL +++GE I+G NG GKST+ K + L P
Sbjct: 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS 63
Query: 478 GGEVLL------GEHN----------VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRI- 520
G+V + E N V N NQ A V E VA E+ I
Sbjct: 64 EGKVYVDGLDTSDEENLWDIRNKAGMVFQN--PDNQIVA----TIVEEDVAFGPENLGIP 117
Query: 521 -DDIKGLLGRCNFKADMLDRK---VSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576
++I+ + K M + + LLSGG+K R+A + ++ DEPT LD
Sbjct: 118 PEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLD- 176
Query: 577 PS--KEML---EEAISEYKGTVITVSH 598
PS +E++ +E +Y T+I ++H
Sbjct: 177 PSGRREVVNTIKELNKKYGITIILITH 203
|
Length = 280 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 24/153 (15%)
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFE----------- 494
T+ERG+ A++G +GCGKSTL +L+ +E P GGE+ ++L E
Sbjct: 37 TLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQI 96
Query: 495 --QNQAEALDLDKTVLETVAE---------AAEDWRIDDIKGLLGRCNFKADMLDRKVSL 543
QN +L+ K V + + E AAE R + ++ + + + DR +
Sbjct: 97 VFQNPYGSLNPRKKVGQILEEPLLINTSLSAAE--RREKALAMMAKVGLRPEHYDRYPHM 154
Query: 544 LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576
SGG++ R+A + ++ ++V DEP + LD+
Sbjct: 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDV 187
|
Length = 327 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 4e-10
Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 40/202 (19%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLD 504
L G+ +IIG +G GKST L+ I LEKP G + + + + Q + D
Sbjct: 27 LQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKR 86
Query: 505 K---------------------TVLETVAEA-------AEDWRIDDIKGLLGRCNFKADM 536
+ TVLE V EA ++ I+ + L + A+
Sbjct: 87 QLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGI-AEK 145
Query: 537 LDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLDEPTNHLDIPSKEMLEE------AISEY 589
D + LSGG++ R+A + + ++P +L DEPT+ LD E++ E ++E
Sbjct: 146 ADAYPAHLSGGQQQRVAIARALAMEPEVML-FDEPTSALD---PELVGEVLKVMQDLAEE 201
Query: 590 KGTVITVSHDRYFVKQIVNRVV 611
T++ V+H+ F + + + V+
Sbjct: 202 GRTMVVVTHEMGFARDVSSHVI 223
|
Length = 256 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 4e-10
Identities = 60/235 (25%), Positives = 90/235 (38%), Gaps = 76/235 (32%)
Query: 424 VVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ ++L++ Y D N E+GE A++GPNG GKSTL G+ KP GEVL
Sbjct: 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL 60
Query: 483 LGEHNVLPNYFEQNQAEALDLDK------------------------TVLETVAEAAEDW 518
+ + E + DK TV E VA
Sbjct: 61 I-------------KGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVA------ 101
Query: 519 RIDDIKGLLGRCNFKADMLD---------RKVSL----------LSGGEKARLAFCKFMV 559
G N + + V + LSGG+K R+A +
Sbjct: 102 --------FGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILA 153
Query: 560 KPSTLLVLDEPTNHLDIP---SKEM-LEEAISEYKGTVITVSHDRYFVKQIVNRV 610
++VLDEPT+ LD P S+ M L +++ T+I +HD V ++V
Sbjct: 154 MKPEIIVLDEPTSGLD-PMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKV 207
|
Length = 275 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (146), Expect = 4e-10
Identities = 51/201 (25%), Positives = 87/201 (43%), Gaps = 26/201 (12%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG-----G 479
+ I+ + F Y + N+ + TAIIGP+GCGKSTLL+ + + G
Sbjct: 5 IKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEG 64
Query: 480 EVLLGEHNVL-------------------PNYFEQNQAEALDLDKTVLETVAEAAEDWRI 520
VLL N+ PN F ++ + + +L T A++ D +
Sbjct: 65 AVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVV 124
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 580
+ + D L + LSGG++ RL + + ++++DEP + LD S
Sbjct: 125 EKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTM 184
Query: 581 MLEEAISEYKG--TVITVSHD 599
+EE + E K T+ V+H+
Sbjct: 185 RIEELMQELKQNYTIAIVTHN 205
|
Length = 251 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 4e-10
Identities = 56/216 (25%), Positives = 91/216 (42%), Gaps = 54/216 (25%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMGLEKP 476
+ ++NL ++D + NL I + TA+IGP+GCGKST ++ LI G
Sbjct: 3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHE 62
Query: 477 RGGEVLLG-----------------------EHNVLPNYFEQNQAEALDL----DKTVLE 509
G + L + N P N A L + D+ +E
Sbjct: 63 --GHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIE 120
Query: 510 TVAE----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565
E AA W D++K D LD+ LSGG++ RL + + ++
Sbjct: 121 ERVEESLKAAALW--DEVK----------DKLDKSALGLSGGQQQRLCIARTIAVSPEVI 168
Query: 566 VLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
++DEP + LD S +E+ I + K T++ V+H+
Sbjct: 169 LMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHN 204
|
Length = 250 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 4e-10
Identities = 49/206 (23%), Positives = 85/206 (41%), Gaps = 28/206 (13%)
Query: 430 LEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL 489
L F + +F + ++ GE + G NG GK+TLL+++ GL G++ +
Sbjct: 17 LAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTAT 76
Query: 490 PNYFEQNQA-----EALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK----------- 533
+ A L D + LE + + GL GR +
Sbjct: 77 RGDRSRFMAYLGHLPGLKADLSTLEN---------LHFLCGLHGRRAKQMPGSALAIVGL 127
Query: 534 ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---K 590
A D V LS G+K RLA + + P+ L +LDEP +LD+ ++ IS +
Sbjct: 128 AGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGG 187
Query: 591 GTVITVSHDRYFVKQIVNRVVEVKGS 616
G + +H Y + R++ ++ +
Sbjct: 188 GAALVTTHGAYAAPPVRTRMLTLEAA 213
|
Length = 214 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 5e-10
Identities = 59/236 (25%), Positives = 104/236 (44%), Gaps = 39/236 (16%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIK 156
K++++ S + +LK V VKKGE ++G NG+GK+T + IAG E SG ++
Sbjct: 2 KIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILF 61
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG--KLERVQKALES-----AVDD 209
++ E+ R AF+ EI G LE ++ AL + +
Sbjct: 62 KGQDL--------LELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEP 113
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+DL+ D LL+ K + +D S + FS G + R
Sbjct: 114 LDLL----DFLKLLKAKLALLGMDEEFLNRS---------------VNEGFSGGEKKRNE 154
Query: 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322
+ ++ L +P L +LDE + LD+D ++ + + + D +II+H + L+ +
Sbjct: 155 ILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYI 210
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 5e-10
Identities = 50/219 (22%), Positives = 84/219 (38%), Gaps = 56/219 (25%)
Query: 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTV-----REEF 182
L G +G+GKT+ + +IAG PD G + L+ V + + +
Sbjct: 29 LFGPSGSGKTSLINMIAGLTRPDEGRIE----------LNGRVLVDAEKGIFLPPEKRRI 78
Query: 183 MSAFKE-----EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237
F++ + G L S D + LL LL R
Sbjct: 79 GYVFQDARLFPHYTVRGNLRYGMWK--SMRAQFDQLVALLGIEHLLDR------------ 124
Query: 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT--- 294
P + S G + R+++G+ LL P+LLL+DEP LDL
Sbjct: 125 -----YPG-------------TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRE 166
Query: 295 -IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMG 332
+ +LE + ++P++ +SH + +L ++V E G
Sbjct: 167 ILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENG 205
|
Length = 352 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 5e-10
Identities = 58/249 (23%), Positives = 120/249 (48%), Gaps = 40/249 (16%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-IK 156
V+ +++K + +TVL + + V GEKV L+G +G+GK+T LRI+ E D G + ++
Sbjct: 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVE 60
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL-----ESAVDDMD 211
+ + + + + +R ++ K+ V ++ ++ +D++
Sbjct: 61 GEQLYHMPGRNGPLVPADEKHLR-----------QMRNKIGMVFQSFNLFPHKTVLDNVT 109
Query: 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271
L+ L +A+A + + +L+ +G AD D + A S G Q R+++
Sbjct: 110 EAPVLV----LGMARAEA------EKRAMELLDMVGL-ADKADHMPAQLSGGQQQRVAIA 158
Query: 272 KILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD----RAFLDQLC 323
+ L P ++L DE T+ LD + + + + + D+ M++++H+ R F D++C
Sbjct: 159 RALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVC 218
Query: 324 ----TKIVE 328
+IVE
Sbjct: 219 FFDKGRIVE 227
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 5e-10
Identities = 65/231 (28%), Positives = 107/231 (46%), Gaps = 31/231 (13%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
+ NISKS+ GV L +V +V+ L+G NGAGK+T L+ + G + DSG+++
Sbjct: 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSIL---- 56
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
F +E + S+ E +S +E+ + L+R S +D+M L GR
Sbjct: 57 -----FQGKEIDFKSSKEALENGISMVHQELNLV--LQR------SVMDNMWL-GR---- 98
Query: 220 FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM-SLGKILLQDP 278
K V+ D + + EL D + VA+ S QM+M + K +
Sbjct: 99 ---YPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAK-VATLSVS-QMQMIEIAKAFSYNA 153
Query: 279 DLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKI 326
++++DEPT+ L + L + K + +V ISH + QLC +I
Sbjct: 154 KIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEI 204
|
Length = 491 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 5e-10
Identities = 51/237 (21%), Positives = 107/237 (45%), Gaps = 22/237 (9%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
++ K Y VLK V+ + G+ + ++G +G+GK+T LR I E+P G+++
Sbjct: 10 DLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQT- 68
Query: 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
+++ R + A K ++ + ++ L +L + +
Sbjct: 69 ----------INLVRDKDGQLKVADKNQLRL------LRTRLTMVFQHFNLWSHMTVLEN 112
Query: 222 LLQRKAQAVNLDTLDAK--VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD 279
+++ Q + L +A+ K + ++G + S G Q R+S+ + L +P+
Sbjct: 113 VMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPE 172
Query: 280 LLLLDEPTNHLDLDTI-EWLE--GYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333
+LL DEPT+ LD + + E L L ++ MV+++H+ F + + ++ G
Sbjct: 173 VLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 229
|
Length = 257 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 5e-10
Identities = 38/176 (21%), Positives = 60/176 (34%), Gaps = 44/176 (25%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEA 500
+++I + G +G GKSTL+ + L P +
Sbjct: 12 QNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFL------PKFSRN----- 60
Query: 501 LDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM------LDRKVSLLSGGEKARLAF 554
K + ID ++ L+ D+ L +K+S LSGGE R+
Sbjct: 61 ----KLI-----------FIDQLQFLI-------DVGLGYLTLGQKLSTLSGGELQRVKL 98
Query: 555 CKFMVKPS--TLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQ 605
+ TL +LDEP+ L L E I TVI + H+ +
Sbjct: 99 ASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS 154
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 6e-10
Identities = 51/258 (19%), Positives = 103/258 (39%), Gaps = 66/258 (25%)
Query: 99 KLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+++N+S S+ V + V++E+KKGE +G+VG +G+GK+ + I G P
Sbjct: 3 EVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMG-LLPKPNAR 61
Query: 155 IKAKS----NMKIAFLSQEF-------EVSM-----------SRTVREEFMSAFKEEMEI 192
I + LS++ E++M T+ ++ + +
Sbjct: 62 IVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG 121
Query: 193 AGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252
K E ++A+E LL+ V + + + K P
Sbjct: 122 LSKKEAKERAIE-----------------LLEL----VGIPDPE-RRLKSYPH------- 152
Query: 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVP 308
S G + R+ + L +P LL+ DEPT LD+ ++ L+ ++
Sbjct: 153 ------ELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTA 206
Query: 309 MVIISHDRAFLDQLCTKI 326
+++I+HD + ++ ++
Sbjct: 207 LILITHDLGVVAEIADRV 224
|
Length = 316 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 6e-10
Identities = 47/177 (26%), Positives = 86/177 (48%), Gaps = 22/177 (12%)
Query: 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
EF + +F+ + + G+ AI+GP G GK+TL+ L+ + P G++L+ ++
Sbjct: 341 TFEFANSSQGVFD-VSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDI 399
Query: 489 -------LPNYFEQNQAEALDLDKTV------------LETVAEAAEDWRIDDIKGLLGR 529
L +A ++++ E V EAA+ D +L R
Sbjct: 400 NTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDF--ILKR 457
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI 586
N ++ + + LSGGE+ RLA + ++K + +LVLDE T+ LD+ ++ ++ AI
Sbjct: 458 SNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAI 514
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 7e-10
Identities = 55/247 (22%), Positives = 101/247 (40%), Gaps = 54/247 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-IK 156
+ L+ + Y+ + + D+ V GE V ++G +GAGK+T L +IAG EP SG++ +
Sbjct: 1 LALDKVRYEYEHLPMEFDLN--VADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVN 58
Query: 157 AKSNMKIA-------FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
+S+ +A L QE + TVR+ + KL Q+
Sbjct: 59 DQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL----KLNAEQQEKVVDA-- 112
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
AQ V + D DRL S G + R++
Sbjct: 113 -----------------AQQVGIA-----------------DYLDRLPEQLSGGQRQRVA 138
Query: 270 LGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTK 325
L + L++ +LLLDEP + LD + + ++ ++ +++++H + + ++
Sbjct: 139 LARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQ 198
Query: 326 IVETEMG 332
I G
Sbjct: 199 IAVVSQG 205
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 7e-10
Identities = 60/239 (25%), Positives = 96/239 (40%), Gaps = 63/239 (26%)
Query: 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQ----LRIIAGQEEPDSGNVIKAKSNMKIAFL 166
V+K++++ ++ GE +GLVG +G+GK+T LR+I Q E I F
Sbjct: 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGE--------------IWFD 345
Query: 167 SQEFEVSMSRT---VREEFMSAFKE-----------EMEIAGKLERVQKALESAVDDMDL 212
Q R VR F++ I L Q L +A
Sbjct: 346 GQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAA------ 399
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
QR+ Q V +M E+G + R A FS G + R+++ +
Sbjct: 400 -----------QREQQ----------VIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIAR 438
Query: 273 ILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
L+ P L++LDEPT+ LD + L+ K + + ISHD + LC +++
Sbjct: 439 ALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVI 497
|
Length = 529 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 7e-10
Identities = 58/216 (26%), Positives = 89/216 (41%), Gaps = 50/216 (23%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI-----MGLEKP 476
+ V I + Y NL+I E TAIIGP+GCGKST +K + M
Sbjct: 10 QEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVK 69
Query: 477 RGGEVLLGEHNVLP-------------------NYFEQN---------QAEALDLDKTVL 508
GE+ N+L N F Q+ + K +
Sbjct: 70 LTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQ 129
Query: 509 ETVAEAAED---WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565
E V ++ +D W D++K D L + LSGG++ RL + + +L
Sbjct: 130 EIVEKSLKDVALW--DEVK----------DRLHTQALSLSGGQQQRLCIARALATNPDVL 177
Query: 566 VLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
++DEPT+ LD S +EE I + K T++ V+H+
Sbjct: 178 LMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHN 213
|
Length = 259 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 7e-10
Identities = 60/234 (25%), Positives = 102/234 (43%), Gaps = 42/234 (17%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ + +S Y + L +V+ + +GE V L+G NGAGKTT L + G SG ++
Sbjct: 6 LSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIV-- 63
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
F ++ ++ +T + +E + I + RV + V++ MG
Sbjct: 64 -------FDGKD--ITDWQTAK-----IMREAVAIVPEGRRVFSRM--TVEENLAMGGFF 107
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
E D Q + V +L P L + + + S G Q +++G+ L+
Sbjct: 108 AERDQFQERI---------KWVYELFPRL---HERRIQRAGTMSGGEQQMLAIGRALMSQ 155
Query: 278 PDLLLLDEPTNHLD-------LDTIEWL--EG---YLGKQDVPMVIISHDRAFL 319
P LLLLDEP+ L DTIE L +G +L +Q+ + DR ++
Sbjct: 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYV 209
|
Length = 237 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 8e-10
Identities = 47/191 (24%), Positives = 84/191 (43%), Gaps = 43/191 (22%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEA 500
N +L + GE I+G +G GKSTLL+ I L +P G+VL+ ++ ++ E
Sbjct: 41 NDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIA----AMSRKEL 96
Query: 501 LDLDK----------------TVLETVAEAAEDWRIDDIKGL------------LGRCNF 532
+L + TVLE VA E ++G+ L
Sbjct: 97 RELRRKKISMVFQSFALLPHRTVLENVAFGLE------VQGVPRAEREERAAEALELVGL 150
Query: 533 KADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD-IPSKEMLEEAI---SE 588
+ + LSGG + R+ + + +L++DE + LD + +EM +E + +E
Sbjct: 151 E-GWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE 209
Query: 589 YKGTVITVSHD 599
+ T++ ++HD
Sbjct: 210 LQKTIVFITHD 220
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 8e-10
Identities = 60/214 (28%), Positives = 94/214 (43%), Gaps = 48/214 (22%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLL----KLIMGLEKPR 477
+ + I++L+ + + + NL I TA++GP+G GKSTLL +LI + R
Sbjct: 1 MNKIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEAR 60
Query: 478 -GGEVLLGEHNV-----------------LPN------YFEQNQAEALDLDKTV------ 507
GEV L ++ +PN FE N A L L++ V
Sbjct: 61 VSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFE-NVALGLKLNRLVKSKKEL 119
Query: 508 LETVAEAAEDWRI-DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566
E V A E ++ D++K D LD LSGG++ RL + + +L+
Sbjct: 120 QERVRWALEKAQLWDEVK----------DRLDAPAGKLSGGQQQRLCIARALAFQPEVLL 169
Query: 567 LDEPTNHLDIPSKEMLEEAISEYKG--TVITVSH 598
DEPT +LD + +E E K T++ V+H
Sbjct: 170 ADEPTANLDPENTAKIESLFLELKKDMTIVLVTH 203
|
Length = 250 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 8e-10
Identities = 60/202 (29%), Positives = 94/202 (46%), Gaps = 27/202 (13%)
Query: 423 SVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
++V K++ F Y D + N + +I RG TA+IG NG GKST+ KLI GL P
Sbjct: 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNP 63
Query: 481 --------VLLGEHNVLPNYFE------QNQAEALDLDKTVLETVAEAAEDWRI--DDIK 524
+ L V + E QN + TV + VA E+ + ++
Sbjct: 64 NSKITVDGITLTAKTVW-DIREKVGIVFQNPDNQF-VGATVGDDVAFGLENRAVPRPEMI 121
Query: 525 GLLGRCNFKADMLD---RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM 581
++ MLD + + LSGG+K R+A + +++LDE T+ LD KE
Sbjct: 122 KIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQ 181
Query: 582 LEEAISEYKG----TVITVSHD 599
+ + I + K TVI+++HD
Sbjct: 182 ILKLIRKLKKKNNLTVISITHD 203
|
Length = 282 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 9e-10
Identities = 57/216 (26%), Positives = 97/216 (44%), Gaps = 54/216 (25%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MGLEKP----- 476
++ I+N Y ++ + I + + TAIIGP+GCGK+TLL+ I M P
Sbjct: 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVE 62
Query: 477 -----RGGEVLLGEHNV----------------LPNYFEQNQAEALD---------LDKT 506
+G ++ + +V P N A LD+
Sbjct: 63 GKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRI 122
Query: 507 VLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566
V E++ +AA W D++K L++ + LSGG++ RL + + +++
Sbjct: 123 VEESLKKAAL-W--DEVK----------SELNKPGTRLSGGQQQRLCIARALAVEPEVIL 169
Query: 567 LDEPTNHLD-IPSK--EMLEEAISEYKGTVITVSHD 599
LDEPT+ LD I ++ E L E +SE T++ V+H+
Sbjct: 170 LDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHN 204
|
Length = 250 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 1e-09
Identities = 54/215 (25%), Positives = 89/215 (41%), Gaps = 53/215 (24%)
Query: 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-------KAKSNMKIAF 165
LK V +++GE + L+G +G GK+T L +I+G +P SG VI + + + F
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD-MDLMGRLLDEFDLLQ 224
Q + + TVRE A + K ER + V++ + L+G L
Sbjct: 61 --QNYSLLPWLTVRENIALAVDRVLPDLSKSER-----RAIVEEHIALVG--------LT 105
Query: 225 RKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
A D+ S G + R+++ + L P +LLLD
Sbjct: 106 EAA--------------------------DKRPGQLSGGMKQRVAIARALSIRPKVLLLD 139
Query: 285 EPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315
EP LD T L+ L + V +++++HD
Sbjct: 140 EPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD 174
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 1e-09
Identities = 52/189 (27%), Positives = 79/189 (41%), Gaps = 46/189 (24%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-IKAKSNMKIAFLSQEF 170
V + + V GE + + G NGAGKTT LR++AG +SG + I K+
Sbjct: 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTA---------- 75
Query: 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230
+R R FM+ G L ++ L S ++++
Sbjct: 76 ----TRGDRSRFMAYL-------GHLPGLKADL-STLENLHF------------------ 105
Query: 231 NLDTLDAKVSKLMPELGFT----ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEP 286
L L + +K MP A D LV S+G + R++L ++ L L LLDEP
Sbjct: 106 -LCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEP 164
Query: 287 TNHLDLDTI 295
+LDL+ I
Sbjct: 165 YANLDLEGI 173
|
Length = 214 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 1e-09
Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 38/204 (18%)
Query: 425 VTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ +N+ F Y + N I G+ A++G +G GKST+ L+ GE+L
Sbjct: 342 IEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEIL 401
Query: 483 LGEHNV----LPNYFEQ-----------------NQAEALDLDKTVLETVAEAAED-WRI 520
L H++ L + Q N A A ++ E + EAA + +
Sbjct: 402 LDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYART-EQYSREQIEEAARMAYAM 460
Query: 521 DDIKGLLGRCNFKADMLDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576
D I + + LD + LLSGG++ R+A + +++ S +L+LDE T+ LD
Sbjct: 461 DFINKM-------DNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT 513
Query: 577 PSKEMLEEAISEYKG--TVITVSH 598
S+ ++ A+ E + T + ++H
Sbjct: 514 ESERAIQAALDELQKNRTSLVIAH 537
|
Length = 582 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 1e-09
Identities = 59/231 (25%), Positives = 97/231 (41%), Gaps = 40/231 (17%)
Query: 401 IEKPF------QRKQMKIRFPERGRSGRSVVTIKNLEFGYE-DRLLFNRANLTIERGEKT 453
+EK F P V N+ F Y+ R + N + TI G+
Sbjct: 233 MEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTV 292
Query: 454 AIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL--DKTVL--- 508
AI+G +G GKST+L+L+ G + + + + + +Q+ A+ + TVL
Sbjct: 293 AIVGESGAGKSTILRLLFRFYDVNSGSITIDGQD-IRDVTQQSLRRAIGIVPQDTVLFND 351
Query: 509 ---------------ETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVS----LLSGGEK 549
E V AAE +I D L + D V LSGGEK
Sbjct: 352 TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSL------PEGYDTGVGERGLKLSGGEK 405
Query: 550 ARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSH 598
R+A + ++K +L+LDE T+ LD +++ ++ A+ E T + ++H
Sbjct: 406 QRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAH 456
|
Length = 497 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 1e-09
Identities = 51/195 (26%), Positives = 78/195 (40%), Gaps = 49/195 (25%)
Query: 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS---------GNVIKAKSNM 161
+LK+V+ K GE + ++G +GAGKTT + +A + G I AK
Sbjct: 39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMR 98
Query: 162 KIAFLSQEFEVSM-SRTVREE--FMSAFK--EEMEIAGKLERVQKALESAVDDMDLMGRL 216
I+ Q+ ++ + + TVRE F + + + K ERV + L+ + L
Sbjct: 99 AISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQ----ALGL---- 150
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
RK +T G V S G + R++ LL
Sbjct: 151 --------RKCA----NTR-------------IGVPGR--VKGLSGGERKRLAFASELLT 183
Query: 277 DPDLLLLDEPTNHLD 291
DP LL DEPT+ LD
Sbjct: 184 DPPLLFCDEPTSGLD 198
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 1e-09
Identities = 58/215 (26%), Positives = 91/215 (42%), Gaps = 54/215 (25%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG-----G 479
+ +K+L F Y ++ I R + TAIIGP+GCGKST +K + + + G G
Sbjct: 8 IKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEG 67
Query: 480 EVLLGEHNVL-------------------PNYFEQNQAE-------------ALDLDKTV 507
V N+ PN F + E DLD+ V
Sbjct: 68 VVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIV 127
Query: 508 LETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLV 566
E+ + A W ++K D L++ LSGG++ RL + + +KP LL
Sbjct: 128 -ESALKGAALW--QEVK----------DKLNKSALGLSGGQQQRLCIARALAIKPKVLL- 173
Query: 567 LDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
+DEP + LD + +EE I + T+ V+H+
Sbjct: 174 MDEPCSALDPIATMKVEELIHSLRSELTIAIVTHN 208
|
Length = 259 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 1e-09
Identities = 50/192 (26%), Positives = 71/192 (36%), Gaps = 40/192 (20%)
Query: 453 TAIIGPNGCGKSTLLKLI-MGL--EKPRGGEVLLGEHNVLPNYFEQNQAEA-------LD 502
T I+G NG GK+T+++ + L E P + G H P + + A
Sbjct: 25 TLIVGQNGAGKTTIIEALKYALTGELPPNSK--GGAH--DPKLIREGEVRAQVKLAFENA 80
Query: 503 LDKTVLET----VAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKA------RL 552
K T + E + L DM R SGGEK RL
Sbjct: 81 NGKKYTITRSLAILENVIFCHQGESNWPL------LDMRGR----CSGGEKVLASLIIRL 130
Query: 553 AFCKFMVKPSTLLVLDEPTNHLDIPSKEM-LEEAISEYKGT----VITVSHDRYFVKQIV 607
A + +L LDEPT +LD + E L E I E K +I ++HD V
Sbjct: 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAA- 189
Query: 608 NRVVEVKGSNLQ 619
+ + V+ Q
Sbjct: 190 DHIYRVEKDGRQ 201
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 1e-09
Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQ------ 497
+ +E G A++G G GKSTL++ L KP G + + +++ P +N
Sbjct: 27 SFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKK 86
Query: 498 -------AEALDLDKTVLETVA------EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLL 544
EA + TVL+ V +ED + L + D++ + L
Sbjct: 87 VSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFEL 146
Query: 545 SGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHD 599
SGG+ R+A M +L LDEP LD ++ + + +Y+ TVI V+H+
Sbjct: 147 SGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHN 204
|
Length = 287 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 51/207 (24%), Positives = 97/207 (46%), Gaps = 20/207 (9%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ I+ + + D+ + + + GE ++GPNG GK+T ++I+GL +P GE+
Sbjct: 3 LEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWN 62
Query: 485 EHNVLPNYFEQN------QAEALDLDKTVLETVAEAAE-------DWRIDDIKGLLGRCN 531
+ + +N + L TV + + AE + + ++ L R
Sbjct: 63 GGPL--SQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQK-KLQAWLERLE 119
Query: 532 FKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK- 590
K+ LS G + ++ F ++ LL+LDEP + LD + E+L++AI E K
Sbjct: 120 IVGKKTK-KIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE 178
Query: 591 --GTVITVSHDRYFVKQIVNRVVEVKG 615
T+I SH V+++ +R++ +K
Sbjct: 179 EGATIIFSSHRMEHVEELCDRLLMLKK 205
|
Length = 300 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 53/208 (25%), Positives = 94/208 (45%), Gaps = 30/208 (14%)
Query: 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKI--AFLSQEFEVSMSRT 177
++G+ +GLVG NG GK+T L+I+AG+ +P+ G +I F E + ++
Sbjct: 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82
Query: 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237
+ + K + ++ + KA++ V +LL++K + LD L
Sbjct: 83 LEGDVKVIVKPQY-----VDLIPKAVKGKVG------------ELLKKKDERGKLDEL-V 124
Query: 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLD---T 294
+L L DR + S G R+++ L +D D DEP+++LD+
Sbjct: 125 DQLELRHVL-------DRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLN 177
Query: 295 IEWLEGYLGKQDVPMVIISHDRAFLDQL 322
L L + D ++++ HD A LD L
Sbjct: 178 AARLIRELAEDDNYVLVVEHDLAVLDYL 205
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 2e-09
Identities = 54/240 (22%), Positives = 112/240 (46%), Gaps = 36/240 (15%)
Query: 59 IAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENIS----KSYKGVTVLK 114
I +A++ +E F F+ ++ ++ ++ V+ +I+ S +GV
Sbjct: 299 IFEARAKLEDFFDLEDSVFQREEPADAPE---LPNVKGAVEFRHITFEFANSSQGV---F 352
Query: 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174
DV++E K G+ V +VG GAGKTT + ++ +P G ++ + I +++E S+
Sbjct: 353 DVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGID--INTVTRE---SL 407
Query: 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234
+++ F A I E ++ E A D+ ++ + A D
Sbjct: 408 RKSIATVFQDAGLFNRSIR---ENIRLGREGATDE-----------EVYEAAKAAAAHDF 453
Query: 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
+ + + +G + G+RL S G + R+++ + +L++ +L+LDE T+ LD++T
Sbjct: 454 ILKRSNGYDTLVG---ERGNRL----SGGERQRLAIARAILKNAPILVLDEATSALDVET 506
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (142), Expect = 2e-09
Identities = 56/188 (29%), Positives = 95/188 (50%), Gaps = 25/188 (13%)
Query: 434 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYF 493
+ R LF+ +L +++G TA+IG G GKSTLL+ + GL +P G+V +G+ V+ +
Sbjct: 17 FASRALFD-IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGD-IVVSSTS 74
Query: 494 EQNQ--------------AEALDLDKTVLETVAEAAEDWRIDDIKG------LLGRCNFK 533
+Q + E+ ++TVL+ VA +++ I K L
Sbjct: 75 KQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLA 134
Query: 534 ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK-EMLE--EAISEYK 590
+ ++ LSGG+ R+A + +LVLDEPT LD ++ EM++ E+I +
Sbjct: 135 DEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSG 194
Query: 591 GTVITVSH 598
TV+ V+H
Sbjct: 195 QTVVLVTH 202
|
Length = 288 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 2e-09
Identities = 59/207 (28%), Positives = 90/207 (43%), Gaps = 51/207 (24%)
Query: 434 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MGLEKPRG---GEVLLGEHNV 488
Y D+ NL ++RG A+IGP+GCGK+T L+ I M P G +LL ++
Sbjct: 14 YGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDI 73
Query: 489 L-------------------PNYFE-----QNQAEALDL----DKTVLETVAE----AAE 516
PN F N L L D+ L VAE A
Sbjct: 74 YGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAA 133
Query: 517 DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576
W D++K D L + LSGG++ RL + + +L++DEPT+ LD
Sbjct: 134 LW--DEVK----------DRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDP 181
Query: 577 PSKEMLEEAISEYKG--TVITVSHDRY 601
S +E+ +++ K T+I V+H+ +
Sbjct: 182 ASTARIEDLMTDLKKVTTIIIVTHNMH 208
|
Length = 252 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 2e-09
Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 36/170 (21%)
Query: 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVL 508
GE I+GP G GK+TL + + P GG V+ +D + +
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIY-----------------IDGEDILE 43
Query: 509 ETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568
E + + ++ K + SG + RLA +L+LD
Sbjct: 44 EVLDQLLL------------------IIVGGKKASGSGELRLRLALALARKLKPDVLILD 85
Query: 569 EPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNL 618
E T+ LD + +L ++ + + N ++ + L
Sbjct: 86 EITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVI-LTTNDEKDLGPALL 134
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 2e-09
Identities = 61/262 (23%), Positives = 118/262 (45%), Gaps = 35/262 (13%)
Query: 95 SSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+G+ + +++ +++ G T L+D ++ V G LVGVNG+GK+T + + G SG
Sbjct: 4 QAGIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGK 63
Query: 154 VIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
I+ L Q + +++ ++ + E V + V+D+ +M
Sbjct: 64 ---------ISILGQ----PTRQALQKNLVAYVPQS-------EEVDWSFPVLVEDVVMM 103
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKL-MPELGFTADDGDRLVASFSSGWQMRMSLGK 272
GR L R+A+ + + A ++++ M E R + S G + R+ L +
Sbjct: 104 GR-YGHMGWL-RRAKKRDRQIVTAALARVDMVEFRH------RQIGELSGGQKKRVFLAR 155
Query: 273 ILLQDPDLLLLDEPTNHLDLDT---IEWLEGYLGKQDVPMVIISHDRAFLDQLC--TKIV 327
+ Q ++LLDEP +D+ T I L L + M++ +H+ + + C T +V
Sbjct: 156 AIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV 215
Query: 328 ETEMGVSRTYEGNYSQYVLEKA 349
+ + S E ++ LE A
Sbjct: 216 KGTVLASGPTETTFTAENLELA 237
|
Length = 272 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 3e-09
Identities = 52/209 (24%), Positives = 89/209 (42%), Gaps = 56/209 (26%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-- 154
++ E++SK+Y G L+ VT+ ++ GE L G +GAGK+T L++I G E P +G +
Sbjct: 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWF 61
Query: 155 ----IKAKSNMKIAFLS-------QEFEVSMSRTVREEFMSAFKEEMEIAG-KLERVQKA 202
I N ++ FL Q+ + M RTV + + IAG + +++
Sbjct: 62 SGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIP----LIIAGASGDDIRRR 117
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262
+ +A+D + L+ D S
Sbjct: 118 VSAALDKVGLL-------------------------------------DKAKNFPIQLSG 140
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
G Q R+ + + ++ P +LL DEPT +LD
Sbjct: 141 GEQQRVGIARAVVNKPAVLLADEPTGNLD 169
|
Length = 222 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 3e-09
Identities = 59/234 (25%), Positives = 104/234 (44%), Gaps = 36/234 (15%)
Query: 98 VKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++L ++K Y G + + + V+ GE GL+GVNGAGKTT +++ G SG+
Sbjct: 1938 LRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDAT 1997
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
A ++ L+ +V + +F A+DD+ L GR
Sbjct: 1998 VAGKSI----LTNISDVHQNMGYCPQF----------------------DAIDDL-LTGR 2030
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
E L + + V + ++ + + LG + DRL ++S G + ++S L+
Sbjct: 2031 ---EHLYLYARLRGVPAEEIEKVANWSIQSLGLSL-YADRLAGTYSGGNKRKLSTAIALI 2086
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKI 326
P L+LLDEPT +D L + ++ +V+ SH + LCT++
Sbjct: 2087 GCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRL 2140
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 3e-09
Identities = 62/226 (27%), Positives = 96/226 (42%), Gaps = 53/226 (23%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLL-----------------K 468
++KNL Y + + NL I + E TA IGP+GCGKST L +
Sbjct: 7 SVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGE 66
Query: 469 LI---MGLEKPRGGEVLL--------GEHNVLPNYFEQNQA-----EALDLDKTVLETVA 512
L + + VLL + N P N A L +K L+ +
Sbjct: 67 LDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIV 126
Query: 513 EAAED----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVL 567
E + W +++ L F+ LSGG++ RL + + VKP T+L++
Sbjct: 127 EKSLTSVGLW--EELGDRLKDSAFE----------LSGGQQQRLCIARAIAVKP-TMLLM 173
Query: 568 DEPTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFVKQIVNRVV 611
DEP + LD + ++E I E K T+I V+H K++ +RV
Sbjct: 174 DEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVA 219
|
Length = 251 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 3e-09
Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 28/204 (13%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE--KPRGGE 480
++ IKNL + + NL+I +GE AI+GPNG GKSTL K+I G K G+
Sbjct: 6 PILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGD 65
Query: 481 VLLGEHNVL----------------PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIK 524
+L ++L E D + + + +D ++
Sbjct: 66 ILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLE 125
Query: 525 GL------LGRCNFKADMLDRKVSL-LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
L L L R V+ SGGEK R + + S L +LDE + LDI
Sbjct: 126 FLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDID 185
Query: 578 SKEMLEEAISEYKGT---VITVSH 598
+ +++ E I++ + +I ++H
Sbjct: 186 ALKIIAEGINKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 4e-09
Identities = 60/249 (24%), Positives = 100/249 (40%), Gaps = 33/249 (13%)
Query: 101 ENISKSY-----KGV--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
N+SK++ GV VL++V+ V GE V L G +G+GK+T LR + PD G
Sbjct: 8 SNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQ 67
Query: 154 VIKAKSNMKIAFLSQE-FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDL 212
++ + ++ E EV R ++S F + L+ V + L
Sbjct: 68 ILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPL--------- 118
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
A+ V + AK + L+ L A+FS G Q R+++ +
Sbjct: 119 -------------LARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIAR 165
Query: 273 ILLQDPDLLLLDEPTNHLDL---DTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVET 329
+ D +LLLDEPT LD + L + +V I HD + + ++++
Sbjct: 166 GFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDV 225
Query: 330 EMGVSRTYE 338
R
Sbjct: 226 SAFSPRKEA 234
|
Length = 235 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 4e-09
Identities = 60/194 (30%), Positives = 88/194 (45%), Gaps = 33/194 (17%)
Query: 430 LEFGYEDRL--LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487
LE ++ +L L NLT+ TAI G +G GK++L+ I GL +P+ G ++L
Sbjct: 2 LELNFKQQLGDLCLTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGR- 60
Query: 488 VLPNYFEQNQAEALDLDK----------------TV---LETVAEAAEDWRIDDIKGLLG 528
VL F+ + L +K V L + + D I LLG
Sbjct: 61 VL---FDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLG 117
Query: 529 RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK-EM---LEE 584
+LDR LSGGEK R+A + ++ LL++DEP LD+P K E+ LE
Sbjct: 118 ----IEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLER 173
Query: 585 AISEYKGTVITVSH 598
E ++ VSH
Sbjct: 174 LAREINIPILYVSH 187
|
Length = 352 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 4e-09
Identities = 64/212 (30%), Positives = 91/212 (42%), Gaps = 54/212 (25%)
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK------------LIMGLEK 475
K+L Y + ++ E+ + TA+IGP+G GKST L+ + G
Sbjct: 24 KDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL 83
Query: 476 PRGGEVLLGEHNVL------------PNYFE----QNQAEAL---------DLDKTVLET 510
RG ++ E NV PN F +N AL LD+ V ET
Sbjct: 84 YRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIV-ET 142
Query: 511 VAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLDE 569
+ A W D +K D L + LSGG++ RL + + VKP LL +DE
Sbjct: 143 SLKQAALW--DQVK----------DDLHKSALTLSGGQQQRLCIARAIAVKPDILL-MDE 189
Query: 570 PTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
P + LD S LEE + E K T+I V+H+
Sbjct: 190 PASALDPISTMQLEETMFELKKNYTIIIVTHN 221
|
Length = 267 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (139), Expect = 4e-09
Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 21/197 (10%)
Query: 424 VVTIKNLEFGYEDRLLFNRAN---LTIERGEKTAIIGPNGCGKSTLLKLIMGL-EKPRGG 479
++ ++NL F YE N+ N +I +GE +IIG NG GKST +LI GL E+ G
Sbjct: 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGK 63
Query: 480 EVLLGEHNVLPNYFEQNQAEALDLDK--------TVLETVAEAAEDWRI--DDIKGLLGR 529
+ GE N + + + TV + VA E+ I +++ +
Sbjct: 64 VKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDE 123
Query: 530 CNFKADMLD---RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI 586
+MLD R+ + LSGG+K R+A + +++LDE T+ LD ++ + I
Sbjct: 124 ALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVI 183
Query: 587 SE----YKGTVITVSHD 599
E Y+ TV++++HD
Sbjct: 184 HEIKEKYQLTVLSITHD 200
|
Length = 277 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 4e-09
Identities = 56/218 (25%), Positives = 93/218 (42%), Gaps = 33/218 (15%)
Query: 425 VTIKNLEFGYEDRLLF-----NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
+ + N+ + Y + F N +LT ++ + T +IG G GKST+++L GL G
Sbjct: 7 IILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETG 66
Query: 480 EVLLGEHNVLPNYFEQNQAEALDLDKTV------------LETVAE----------AAED 517
+ ++G++ + N + E L K + ET+ + +
Sbjct: 67 QTIVGDYAIPANL--KKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQ 124
Query: 518 WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
+ LL D + R LSGG+K R+A + LVLDEPT LD
Sbjct: 125 EAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPK 184
Query: 578 SKE----MLEEAISEYKGTVITVSHDRYFVKQIVNRVV 611
+E + E EYK +I V+H+ V +I + V+
Sbjct: 185 GEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVI 222
|
Length = 289 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 5e-09
Identities = 52/203 (25%), Positives = 84/203 (41%), Gaps = 52/203 (25%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ L+++ SY + + D+T V GE V ++G +GAGK+T L +IAG E P SG ++
Sbjct: 2 LALDDVRFSYGHLPMRFDLT--VPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILIN 59
Query: 158 KSNMK--------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQK-ALESAVD 208
+ ++ L QE + TV + + KL Q+ +E+A
Sbjct: 60 GVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL----KLNAEQREKVEAA-- 113
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
A V L A RL S G + R+
Sbjct: 114 ------------------AAQVGL-----------------AGFLKRLPGELSGGQRQRV 138
Query: 269 SLGKILLQDPDLLLLDEPTNHLD 291
+L + L+++ +LLLDEP + LD
Sbjct: 139 ALARCLVREQPILLLDEPFSALD 161
|
Length = 231 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 5e-09
Identities = 50/214 (23%), Positives = 93/214 (43%), Gaps = 42/214 (19%)
Query: 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKI--AFLSQEFEVSMSRT 177
+ G+ VG++G NG GK+T L+I+AG+ +P+ G S ++ F E + +
Sbjct: 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKL 156
Query: 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDM----DLMGRLLDEFDLLQRKAQAVNLD 233
E + K + ++ + K ++ V ++ D G+ + + L L+
Sbjct: 157 YEGELRAVHKPQY-----VDLIPKVVKGKVGELLKKVDERGKFDEVVERL-------GLE 204
Query: 234 -TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD- 291
LD VS+L S G R+++ LL+D D+ DEP+++LD
Sbjct: 205 NVLDRDVSEL------------------SGGELQRVAIAAALLRDADVYFFDEPSSYLDI 246
Query: 292 ---LDTIEWLEGYLGKQDVPMVIISHDRAFLDQL 322
L+ + + ++++ HD A LD L
Sbjct: 247 RQRLNAARVIRELA-EDGKYVIVVEHDLAVLDYL 279
|
Length = 591 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 5e-09
Identities = 53/198 (26%), Positives = 92/198 (46%), Gaps = 23/198 (11%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE----HNVLPNYFEQNQA- 498
N E+G+ AI+G G GKSTL++ I L KP G V + + H Y +
Sbjct: 27 NTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKR 86
Query: 499 --------EALDLDKTVLETVAEAAEDWR--IDDIKG----LLGRCNFKADMLDRKVSLL 544
E+ + TV + ++++ +D++K LL F D++ + +
Sbjct: 87 IGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQM 146
Query: 545 SGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK----EMLEEAISEYKGTVITVSHDR 600
SGG+ ++A + ++VLDEPT LD SK +L+ ++ T+I VSHD
Sbjct: 147 SGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM 206
Query: 601 YFVKQIVNRVVEVKGSNL 618
V + + V+ +K ++
Sbjct: 207 NEVARYADEVIVMKEGSI 224
|
Length = 286 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 6e-09
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 425 VTIKNLEFGYEDR-----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
+++++ F ++ NL + +GE AI+GP G GKS+LL ++G + G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 480 EVLLG 484
V +
Sbjct: 61 SVSVP 65
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 7e-09
Identities = 46/229 (20%), Positives = 80/229 (34%), Gaps = 46/229 (20%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ + L Y + + GE I+G +G GKSTLL + G P G
Sbjct: 3 LLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATY 62
Query: 484 -----GEHNVLP--------------NYFEQNQAEALDLDKTVLETVAE----------- 513
E + + QN + L + + + E
Sbjct: 63 IMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYG 122
Query: 514 ----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569
A+DW L +D SGG + RL + +V L+ +DE
Sbjct: 123 NIRATAQDW--------LEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDE 174
Query: 570 PTNHLDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVK 614
PT LD+ + ++L + + VI V+HD + + R++ ++
Sbjct: 175 PTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQ 223
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 7e-09
Identities = 54/199 (27%), Positives = 89/199 (44%), Gaps = 23/199 (11%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKL----------IMGL 473
+ NL Y + N+ IE+ + TA+IG +GCGKST L+ I GL
Sbjct: 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGL 61
Query: 474 EKPRGGEVLLGEHNVL----------PNYFEQNQAEALDLDKTVLETVA-EAAEDWRIDD 522
+ G +V + L PN F ++ E + + + + E+ + D
Sbjct: 62 VEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVD 121
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML 582
+G D L + LSGG++ RL + + LL+LDEPT+ LD S ++
Sbjct: 122 CLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVI 181
Query: 583 EEAISE--YKGTVITVSHD 599
EE + E + ++I V+H+
Sbjct: 182 EELLKELSHNLSMIMVTHN 200
|
Length = 246 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 7e-09
Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 36/201 (17%)
Query: 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
G V+ ++ L + + GE I G G G++ L + + GL P GE
Sbjct: 1 GEPVLEVRGLSVK----GAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGE 56
Query: 481 VLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRK 540
+ L V + +A+ +A ED R + GL+ LD
Sbjct: 57 ITLDGKPVTRR----SPRDAIRAG------IAYVPED-RKRE--GLV---------LDLS 94
Query: 541 V-------SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--- 590
V SLLSGG + ++ +++ + +L+LDEPT +D+ +K + I E
Sbjct: 95 VAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAG 154
Query: 591 GTVITVSHDRYFVKQIVNRVV 611
V+ +S + + + +R++
Sbjct: 155 KAVLLISSELDELLGLCDRIL 175
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 7e-09
Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 35/208 (16%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEA 500
+ A+L IE GE ++G +G GKSTLL+ + GL G VL+ + + + + A
Sbjct: 41 HNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATL 100
Query: 501 LDLD----------------KTVLETVA---------EAAEDWRIDDIKGLLGRCNFKAD 535
L +TV E VA +A R+D+ L+G A
Sbjct: 101 RRLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELVGL----AQ 156
Query: 536 MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD--IPSK---EMLEEAISEYK 590
DRK LSGG + R+ + + +L++DEP + LD I ++ E+LE S+ K
Sbjct: 157 WADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQ-SKLK 215
Query: 591 GTVITVSHDRYFVKQIVNRVVEVKGSNL 618
T++ VSHD +I NR+ ++G +
Sbjct: 216 KTIVFVSHDLDEALKIGNRIAIMEGGRI 243
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 8e-09
Identities = 54/230 (23%), Positives = 94/230 (40%), Gaps = 59/230 (25%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
+ ++ Y G L+D+ ++ GE + ++G +G GKTT L +IAG G++
Sbjct: 4 ISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLD-- 61
Query: 160 NMKIAFLSQEFEVSMS-------RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDL 212
+ E V R V++ AF ++ K++R++ A +
Sbjct: 62 GKPVEGPGAERGVVFQNEGLLPWRNVQDNV--AFGLQLAGVEKMQRLEIAHQ-------- 111
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
+L++ V L+ G R + S G + R+ + +
Sbjct: 112 ---------MLKK----VGLE-------------GA----EKRYIWQLSGGQRQRVGIAR 141
Query: 273 ILLQDPDLLLLDEPTNHLDLDTIEWLEGYL-------GKQDVPMVIISHD 315
L +P LLLLDEP LD T E ++ L GKQ +++I+HD
Sbjct: 142 ALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQ---VLLITHD 188
|
Length = 255 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 8e-09
Identities = 61/216 (28%), Positives = 95/216 (43%), Gaps = 56/216 (25%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMGLEKP 476
V+ +NL Y L L I + + TA IGP+GCGKST+L+ LI G
Sbjct: 10 VLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVE 69
Query: 477 RGGEVLLGEHNVL-------------------PNYFEQNQAEAL-----------DLDKT 506
G+V N+ PN F ++ + + D+D+
Sbjct: 70 --GKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDEL 127
Query: 507 VLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLL 565
V ++ +AA W D++K D L + LSGG++ RL + + V+P +L
Sbjct: 128 VERSLRQAAL-W--DEVK----------DKLKQSGLSLSGGQQQRLCIARAIAVQPEVIL 174
Query: 566 VLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
+DEP + LD S +EE + E K T+I V+H+
Sbjct: 175 -MDEPCSALDPISTLRIEELMHELKEQYTIIIVTHN 209
|
Length = 264 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 8e-09
Identities = 53/202 (26%), Positives = 94/202 (46%), Gaps = 35/202 (17%)
Query: 98 VKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
V+ +++S SY ++DV++E K G+ V +VG GAGK+T + ++ +P SG I
Sbjct: 335 VEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSG-RIL 393
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEM----EIAGKLERVQKALESAVDDMDL 212
I +++ ++R F++ I + RV + A D
Sbjct: 394 I-DGTDIRTVTRA-------SLRRNIAVVFQDAGLFNRSIEDNI-RVGR--PDATD---- 438
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
+E +AQA D ++ K G+ G+R S G + R+++ +
Sbjct: 439 -----EEMRAAAERAQA--HDFIERK------PDGYDTVVGER-GRQLSGGERQRLAIAR 484
Query: 273 ILLQDPDLLLLDEPTNHLDLDT 294
LL+DP +L+LDE T+ LD++T
Sbjct: 485 ALLKDPPILILDEATSALDVET 506
|
Length = 588 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 9e-09
Identities = 41/173 (23%), Positives = 66/173 (38%), Gaps = 51/173 (29%)
Query: 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKT 506
++ GE I+GPNG GK+T +K++ G P G D
Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNG-------------------------DND 56
Query: 507 VLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566
+ + + ID LSGGE R+A +++ +T +
Sbjct: 57 EWDGITPVYKPQYID----------------------LSGGELQRVAIAAALLRNATFYL 94
Query: 567 LDEPTNHLDIPSKEMLEEAI----SEYKGTVITVSHDRYFVKQIVNRVVEVKG 615
DEP+ +LDI + AI E K T + V HD + + +R+ +G
Sbjct: 95 FDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEG 147
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 9e-09
Identities = 48/196 (24%), Positives = 83/196 (42%), Gaps = 31/196 (15%)
Query: 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------ 489
+ T+ G+ AIIG NG GKSTL K++ G+ +P GE+L+ +H +
Sbjct: 31 PVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIR 90
Query: 490 -----PNYF---EQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKV 541
PN + LD L + + R I L D +
Sbjct: 91 MIFQDPNTSLNPRLRIGQILDFP---LRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYP 147
Query: 542 SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE-----MLEEAISEYKG-TVIT 595
+L+ G+K R+A + ++ +++ DE LD+ + MLE + E +G + I
Sbjct: 148 HMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLE--LQEKQGISYIY 205
Query: 596 VSHDRYFVKQIVNRVV 611
V+ +K I ++V+
Sbjct: 206 VTQHIGMIKHISDQVL 221
|
Length = 267 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 1e-08
Identities = 51/226 (22%), Positives = 92/226 (40%), Gaps = 42/226 (18%)
Query: 100 LENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
LE Y +L +++ V+ GE + + G +G GK+T L+I+A P SG ++
Sbjct: 4 LELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL-- 61
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL--ESAVDDMDLMGR 215
FE V A+++++ AL ++ D++ +
Sbjct: 62 ------------FE---GEDVSTLKPEAYRQQVSYC----AQTPALFGDTVEDNLIFPWQ 102
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
+ + R A L S L + + S G + R++L + L
Sbjct: 103 IRN--RRPDRAAALDLLARFALPDSIL-----------TKNITELSGGEKQRIALIRNLQ 149
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEG----YLGKQDVPMVIISHDRA 317
P +LLLDE T+ LD +E Y+ +Q+V ++ I+HD+
Sbjct: 150 FMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKD 195
|
Length = 223 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 1e-08
Identities = 53/194 (27%), Positives = 85/194 (43%), Gaps = 29/194 (14%)
Query: 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQ 168
GVT +KDV++EV+ GE VG+ GV G G++ + I+G +P SG ++
Sbjct: 270 GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILL-----------N 318
Query: 169 EFEVSMSRTVREEFMS--AFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRK 226
+V + RE A+ E +R L V D+ L L+ +K
Sbjct: 319 GKDVLGRLSPRERRRLGLAYVPE-------DRHGHGL---VLDLSLAENLV--LGRHDKK 366
Query: 227 AQA----VNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLL 282
+ ++ + +L+ E A D S S G Q ++ L + L + PDLL+
Sbjct: 367 PFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLI 426
Query: 283 LDEPTNHLDLDTIE 296
+PT LD+ IE
Sbjct: 427 AAQPTRGLDVGAIE 440
|
Length = 501 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 1e-08
Identities = 55/209 (26%), Positives = 87/209 (41%), Gaps = 58/209 (27%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI---- 155
L N+S G T+L ++ G+ GL+G NG+GK+T L+++ + P G ++
Sbjct: 14 LRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQ 73
Query: 156 -----KAKS-NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIA-----GKLERVQKALE 204
+K+ K+A+L Q+ + TVR E + I G L R A
Sbjct: 74 PLESWSSKAFARKVAYLPQQLPAAEGMTVR--------ELVAIGRYPWHGALGRFGAADR 125
Query: 205 SAVDD-MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
V++ + L+G L+ A RLV S S G
Sbjct: 126 EKVEEAISLVG--------LKPLAH--------------------------RLVDSLSGG 151
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDL 292
+ R + ++ QD LLLDEPT+ LD+
Sbjct: 152 ERQRAWIAMLVAQDSRCLLLDEPTSALDI 180
|
Length = 265 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 1e-08
Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 41/208 (19%)
Query: 420 SGRSVVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
SGR + I N+ F Y +D L+ NL++ A++G G GKSTL L+MG
Sbjct: 338 SGR--IDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTE 395
Query: 479 GEVLLG-------EHNVLPNYFEQNQAEALDLDKTVLETVA---EAAED--WRI------ 520
GE+ L H+VL Q + + L T L V + +E+ W+
Sbjct: 396 GEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQL 455
Query: 521 --------DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572
D + LG + + LS G+K LA + +V+ +L+LDE T
Sbjct: 456 AELARSLPDGLYTPLG----------EQGNNLSVGQKQLLALARVLVQTPQILILDEATA 505
Query: 573 HLDIPSKEMLEEAISEY--KGTVITVSH 598
++D +++ +++A++ T++ ++H
Sbjct: 506 NIDSGTEQAIQQALAAVREHTTLVVIAH 533
|
Length = 592 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 1e-08
Identities = 57/224 (25%), Positives = 95/224 (42%), Gaps = 56/224 (25%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG-----G 479
+ + NL F Y+ + + ++ I + + TAIIGP+GCGKST LK + + + G
Sbjct: 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEG 67
Query: 480 EVLLGEHNVL-------------------PNYFEQNQAE-------------ALDLDKTV 507
V N+ PN F + + L++D V
Sbjct: 68 RVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIV 127
Query: 508 LETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLV 566
E+ + A+ W D+IK + + LSGG++ RL + + VKP LL
Sbjct: 128 -ESALKDADLW--DEIKHKIHKSALD----------LSGGQQQRLCIARALAVKPKVLL- 173
Query: 567 LDEPTNHLDIPSKEMLEEAISEYK----GTVITVSHDRYFVKQI 606
+DEP LD + +E I + T++ VSH+ + V ++
Sbjct: 174 MDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRL 217
|
Length = 261 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 1e-08
Identities = 54/200 (27%), Positives = 87/200 (43%), Gaps = 39/200 (19%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE-----------------VLLGEH 486
+L I GE AI+G +G GKSTL+ ++ L+KP G L EH
Sbjct: 28 SLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREH 87
Query: 487 --------NVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLD 538
++L + E V A R+ + LL R D ++
Sbjct: 88 FGFIFQRYHLLSHLTAAQNVE-------VPAVYAGLERKQRLLRAQELLQRLGL-EDRVE 139
Query: 539 RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE----MLEEAISEYKGTVI 594
+ S LSGG++ R++ + ++ +++ DEPT LD S E +L + + + TVI
Sbjct: 140 YQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQ-LRDRGHTVI 198
Query: 595 TVSHDRYFVKQIVNRVVEVK 614
V+HD Q RV+E++
Sbjct: 199 IVTHDPQVAAQ-AERVIEIR 217
|
Length = 648 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 1e-08
Identities = 58/210 (27%), Positives = 89/210 (42%), Gaps = 52/210 (24%)
Query: 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK----LIMGLEKPR-GGEVLL 483
NL Y + +L I + A++GP+GCGKSTLL+ L+ E+ R GEV L
Sbjct: 9 NLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRL 68
Query: 484 GEHNV-------------------LPNYFE-----QNQAEALDLDKTV---------LET 510
N+ PN F N A + L+ V +E
Sbjct: 69 FGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEW 128
Query: 511 VAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570
+ A W D++K D L+ S LSGG++ RL + + +L++DEP
Sbjct: 129 ALKKAALW--DEVK----------DRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEP 176
Query: 571 TNHLDIPSKEMLEEAISEYKG--TVITVSH 598
T ++D +EE + E K T++ V+H
Sbjct: 177 TANIDPVGTAKIEELLFELKKEYTIVLVTH 206
|
Length = 253 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 1e-08
Identities = 50/204 (24%), Positives = 89/204 (43%), Gaps = 26/204 (12%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
++++ K++ Y + + +L E E TA+IGP+GCGKST L+ + +
Sbjct: 2 ENIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIK 61
Query: 482 LLGEHNVLPNYFEQNQAEALDLDK--------------TVLETVAEAAE----------D 517
+ GE ++ + ++L K +V + VA + D
Sbjct: 62 ITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELID 121
Query: 518 WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
R+++ D LDR SGG++ R+ + + +++LDEPT+ LD
Sbjct: 122 QRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPI 181
Query: 578 SKEMLEEAISEYKG--TVITVSHD 599
S +EE + E K T I V+H+
Sbjct: 182 SSSEIEETLMELKHQYTFIMVTHN 205
|
Length = 251 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 2e-08
Identities = 41/204 (20%), Positives = 83/204 (40%), Gaps = 52/204 (25%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
+++ N+S ++DV++ V+ GE +G+ G+ GAG+T R + G SG +
Sbjct: 264 LEVRNLSGG----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLD 319
Query: 155 ---IKAKSNMK-----IAFLSQEFEVS---MSRTVREEFMSAFKEEMEIAGKLERVQKAL 203
++ +S IA++ ++ + + ++ E ++
Sbjct: 320 GKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIA-ENITL------------------ 360
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
A L+D RK +A+ + + L ++ + + S G
Sbjct: 361 --ASLRRFSRRGLIDR-----RKERAL--------AERYIRRLRIKTPSPEQPIGTLSGG 405
Query: 264 WQMRMSLGKILLQDPDLLLLDEPT 287
Q ++ L + L DP +L+LDEPT
Sbjct: 406 NQQKVVLARWLATDPKVLILDEPT 429
|
Length = 500 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-08
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 55/210 (26%)
Query: 98 VKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++ E ++ +Y L + V+ GE V LVG +GAGK+T +++ +P SG +
Sbjct: 338 IEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI 397
Query: 155 IKAKSNMK----------IAFLSQE---FEVSMSRTVREEFMSAFKEEMEIAGKLERVQK 201
+ +++ +A + Q+ F S+ +R A EE+E A
Sbjct: 398 LLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAA------- 450
Query: 202 ALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFS 261
R A A +S L PE G+ G+R V + S
Sbjct: 451 -----------------------RAAHA------HEFISAL-PE-GYDTYLGERGV-TLS 478
Query: 262 SGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
G + R+++ + +L+D +LLLDE T+ LD
Sbjct: 479 GGQRQRIAIARAILKDAPILLLDEATSALD 508
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 2e-08
Identities = 50/236 (21%), Positives = 94/236 (39%), Gaps = 45/236 (19%)
Query: 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQE 169
+ + ++ +++G+ +GLVG +G+GK+T + +I F Q+
Sbjct: 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQG----------EIRFDGQD 349
Query: 170 FEVSMSRTVREEFMSAFKEEMEIA-----GKLERVQKALESAVDDMDLMGRLLDEFDLLQ 224
+ + M + M++ G L + + + + L + Q
Sbjct: 350 I-----DGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQ 404
Query: 225 RKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
R +A + E+G +R FS G + R+++ + L+ P+L+LLD
Sbjct: 405 RVIEA-------------LEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLD 451
Query: 285 EPTNHLDLDT----IEWLEGYLGKQDVPMVIISHD----RAFLDQLCT----KIVE 328
EPT+ LD ++ L K + + ISHD RA ++ KIVE
Sbjct: 452 EPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVE 507
|
Length = 534 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 2e-08
Identities = 49/187 (26%), Positives = 79/187 (42%), Gaps = 40/187 (21%)
Query: 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTV 178
+ GE V + G NGAGKT+ LRI+AG PD+G ++ + + R
Sbjct: 23 TLNAGELVQIEGPNGAGKTSLLRILAGLARPDAG---------EVLWQGEPI-----RRQ 68
Query: 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDL---MGRLLDEFDLLQRKAQAVNLDTL 235
R+E+ ++ G + K +A++++ + D+ L + AQ V L
Sbjct: 69 RDEYHQ----DLLYLGHQPGI-KTELTALENLRFYQRLHGPGDDEALWEALAQ-VGL--- 119
Query: 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTI 295
GF D V S+G Q R++L ++ L L +LDEP +D +
Sbjct: 120 ----------AGFE----DVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGV 165
Query: 296 EWLEGYL 302
LE L
Sbjct: 166 ARLEALL 172
|
Length = 204 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 55/217 (25%), Positives = 96/217 (44%), Gaps = 42/217 (19%)
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG--------------- 484
N +L + G+ +IG +G GKSTL++ + LE+P G V++
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 485 --------EH-NVLPN--YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK 533
+H N+L + F N A L+LD T + + ++ ++ L+G
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFG-NVALPLELDNTPKDEIKR-----KVTELLALVGL---- 130
Query: 534 ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK----EMLEEAISEY 589
D D S LSGG+K R+A + + +L+ DE T+ LD + E+L+E
Sbjct: 131 GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL 190
Query: 590 KGTVITVSHDRYFVKQIVNRVVEVKGSNL--QDYAGD 624
T++ ++H+ VK+I + V + L Q +
Sbjct: 191 GLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSE 227
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 45/155 (29%), Positives = 80/155 (51%), Gaps = 20/155 (12%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-----------VLPNY 492
NL IE+GE AI G G GK++LL LI+G +P G++ +H+ ++P
Sbjct: 57 NLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI---KHSGRISFSSQFSWIMPGT 113
Query: 493 FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARL 552
++N + D+ ++V +A + +DI + N +L LSGG++AR+
Sbjct: 114 IKENIIFGVSYDEYRYKSVVKACQ--LEEDITKFPEKDN---TVLGEGGITLSGGQRARI 168
Query: 553 AFCKFMVKPSTLLVLDEPTNHLDIPS-KEMLEEAI 586
+ + + K + L +LD P +LD+ + KE+ E +
Sbjct: 169 SLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCV 203
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 84/393 (21%), Positives = 158/393 (40%), Gaps = 95/393 (24%)
Query: 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIIS 313
S G + R+ + LL P+LL+ DEPT LD L + L+ L + ++ I+
Sbjct: 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELN---MGLLFIT 214
Query: 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLI 373
H+ + + +L ++ + G R E N + + Y T+ L+
Sbjct: 215 HNLSIVRKLADRVAVMQNG--RCVEQNRAATLFSAPT---HPY------------TQKLL 257
Query: 374 NRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVV----TIKN 429
N +E + + E +Q+++ FP R + V +KN
Sbjct: 258 N-------------SEPSGDPVPLPEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKN 304
Query: 430 LEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKST----LLKLIMGLEKPRGGEV---- 481
+ F T+ GE ++G +G GKST LL+LI GE+
Sbjct: 305 ISF-------------TLRPGETLGLVGESGSGKSTTGLALLRLI-----NSQGEIWFDG 346
Query: 482 ----LLGEHNVLP-----NYFEQNQAEALDLDKTVLETVAE----------AAEDWRIDD 522
L +LP Q+ +L+ VL+ + E AA+ R
Sbjct: 347 QPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQ--REQQ 404
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK--- 579
+ ++ + R + SGG++ R+A + ++ +L++LDEPT+ LD +
Sbjct: 405 VIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQI 464
Query: 580 -EMLEEAISEYKGTVITVSHDRYFVKQIVNRVV 611
+L+ +++ + +SHD + V+ + ++V+
Sbjct: 465 LALLKSLQQKHQLAYLFISHDLHVVRALCHQVI 497
|
Length = 529 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 2e-08
Identities = 54/207 (26%), Positives = 95/207 (45%), Gaps = 43/207 (20%)
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502
A+ T+ G A++G NG GKSTL K +MG + G++ + QA
Sbjct: 26 ASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPT-------RQA---- 74
Query: 503 LDKTVLETVAEAAE-DWR----IDDI--------KGLLGRCN-----------FKADMLD 538
L K ++ V ++ E DW ++D+ G L R + DM++
Sbjct: 75 LQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVE 134
Query: 539 ---RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK----EMLEEAISEYKG 591
R++ LSGG+K R+ + + + +++LDEP +D+ ++ +L E E K
Sbjct: 135 FRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGK- 193
Query: 592 TVITVSHDRYFVKQIVNRVVEVKGSNL 618
T++ +H+ V + + V VKG+ L
Sbjct: 194 TMLVSTHNLGSVTEFCDYTVMVKGTVL 220
|
Length = 272 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 2e-08
Identities = 49/201 (24%), Positives = 89/201 (44%), Gaps = 27/201 (13%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++NL Y ++ ++ I + TA+IGP+GCGKST ++ + + + G
Sbjct: 13 IKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEG 72
Query: 485 EHNVLPNYFEQNQAEALDLDKTV-----------LETVAEAAEDWRI-----DDIKGLLG 528
+ ++ + + ++L K V + A RI D+ G++
Sbjct: 73 KVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVE 132
Query: 529 RC-------NFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLDEPTNHLDIPSKE 580
+ +D L LSGG++ RL + + VKP +L DEPT+ LD S
Sbjct: 133 NALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIIL-FDEPTSALDPISTA 191
Query: 581 MLEEAISEYKG--TVITVSHD 599
+E+ I K T++ V+H+
Sbjct: 192 RIEDLIMNLKKDYTIVIVTHN 212
|
Length = 258 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 2e-08
Identities = 55/238 (23%), Positives = 100/238 (42%), Gaps = 43/238 (18%)
Query: 97 GVKLENISK-----------SYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG 145
G KL++I K + K V + KD+ + + +G+ VG +G GK+T L++I
Sbjct: 374 GKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIER 433
Query: 146 QEEPDSGNVIKAKSN-----------MKIAFLSQE---FEVSMSRTVREEFMS-----AF 186
+P G++I S+ KI +SQ+ F S+ ++ S A
Sbjct: 434 LYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEAL 493
Query: 187 KEEMEIAG-----KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD-AKVS 240
G + D++ M D +L++ + + + VS
Sbjct: 494 SNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVS 553
Query: 241 KLMPELGFTA---DDGDRLVAS----FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
K + F + D + LV S S G + R+S+ + ++++P +L+LDE T+ LD
Sbjct: 554 KKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLD 611
|
Length = 1466 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 61/216 (28%), Positives = 97/216 (44%), Gaps = 27/216 (12%)
Query: 428 KNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
+N+ F Y+D NLTI+RGE +IG NG GKSTL L+ GL +P+ GE+LL
Sbjct: 326 RNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK 385
Query: 487 NVLPNYFEQNQAEALDLDKTV----------LETVAEAAEDWRIDDIKGLLGRCNFKADM 536
V + L V L + A ++ L + K ++
Sbjct: 386 PVTAE----QPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAH-KLEL 440
Query: 537 LDRKVSL--LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD-----IPSKEMLEEAISEY 589
D ++S LS G+K RLA + + +L+LDE D + +L + E
Sbjct: 441 EDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPL-LQEM 499
Query: 590 KGTVITVSH-DRYFVKQIVNRVVEVKGSNLQDYAGD 624
T+ +SH D YF+ +R++E++ L + G+
Sbjct: 500 GKTIFAISHDDHYFIH--ADRLLEMRNGQLSELTGE 533
|
Length = 547 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 3e-08
Identities = 57/248 (22%), Positives = 113/248 (45%), Gaps = 47/248 (18%)
Query: 79 NKKYSNKQSNTGASSISSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKT 137
+ ++ NK+ T ++++ + + ++S SY G +L D++ +K K +VG++G+GK+
Sbjct: 455 DSEFINKKKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKS 514
Query: 138 TQLRIIAGQEEPDSGNVIKAKSNMK----------IAFLSQEFEVSMSRTVREEFMSAFK 187
T +++ G + SG ++ ++K I +L QE S ++ E + K
Sbjct: 515 TLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQE-PYIFSGSILENLLLGAK 573
Query: 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247
E + + + A E A D+ + MP LG
Sbjct: 574 ENVSQ----DEIWAACEIAEIKDDI----------------------------ENMP-LG 600
Query: 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT-IEWLEGYLGKQD 306
+ + + +S S G + R++L + LL D +L+LDE T++LD T + + L QD
Sbjct: 601 YQTELSEE-GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQD 659
Query: 307 VPMVIISH 314
++ ++H
Sbjct: 660 KTIIFVAH 667
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 3e-08
Identities = 56/228 (24%), Positives = 89/228 (39%), Gaps = 51/228 (22%)
Query: 73 SADEFENKKYSNKQSNTGASSISSGVKLENIS-KSYKGVTVLKDVTWEVKKGEKVGLVGV 131
+A K + + G+ LEN+S ++ G T+L ++ +EV+ GE++ + G
Sbjct: 368 AAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGE 427
Query: 132 NGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEME 191
+GAGKT+ LR +AG SG + ++ + FL Q + T+RE
Sbjct: 428 SGAGKTSLLRALAGLWPWGSGRIS-MPADSALLFLPQRPYLP-QGTLRE----------- 474
Query: 192 IAGKLERVQKAL-----ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246
AL D +L+ L V L L L
Sbjct: 475 ----------ALCYPNAAPDFSDAELVAVL-----------HKVGLG-------DLAERL 506
Query: 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
L S G Q R++ ++LL P + LDE T+ LD +T
Sbjct: 507 DEEDRWDRVL----SGGEQQRLAFARLLLHKPKWVFLDEATSALDEET 550
|
Length = 604 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 3e-08
Identities = 57/180 (31%), Positives = 84/180 (46%), Gaps = 29/180 (16%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAE----- 499
L ++RGE A+IG +G GKSTLL ++ GL+ GEV L L E+ +A+
Sbjct: 31 LVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQP-LHQMDEEARAKLRAKH 89
Query: 500 --------ALDLDKTVLETV-------AEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLL 544
L LE V E++ R + K LL + LD + L
Sbjct: 90 VGFVFQSFMLIPTLNALENVELPALLRGESSRQSR-NGAKALLEQLGL-GKRLDHLPAQL 147
Query: 545 SGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIPSKE----MLEEAISEYKGTVITVSHD 599
SGGE+ R+A + F +P +L DEPT +LD + + +L E+ T+I V+HD
Sbjct: 148 SGGEQQRVALARAFNGRPD-VLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHD 206
|
Length = 228 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 3e-08
Identities = 45/183 (24%), Positives = 77/183 (42%), Gaps = 35/183 (19%)
Query: 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--------EKPRGGEVL-------- 482
L + + G I GPNGCGKS+L +++ L KP G++
Sbjct: 467 LIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYM 526
Query: 483 ----LGEHNVLPNYFEQNQAEAL---DLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD 535
L + + P+ E + L DL++ +L+ V ++ I G + D
Sbjct: 527 TLGTLRDQIIYPDSSEDMKRRGLSDKDLEQ-ILDNV-------QLTHILEREGGWSAVQD 578
Query: 536 MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVIT 595
+D +LSGGEK R+A + +LDE T+ + + + + E+ T+ +
Sbjct: 579 WMD----VLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFS 634
Query: 596 VSH 598
VSH
Sbjct: 635 VSH 637
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 3e-08
Identities = 59/219 (26%), Positives = 93/219 (42%), Gaps = 54/219 (24%)
Query: 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMG 472
S +++++N+ Y I RG+ TA+IGP+GCGKST+L+ LI G
Sbjct: 9 SKNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEG 68
Query: 473 LEKPRGGEVLLGEHNVL-------------------PNYFEQNQAEALDLDKTVLETVAE 513
G VL ++ PN F K++ E +A
Sbjct: 69 CSLK--GRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFP----------KSIYENIAF 116
Query: 514 AAEDWRIDDIKG----LLGRCNFKA-------DMLDRKVSLLSGGEKARLAFCKFMVKPS 562
A RI+ G L+ R KA D L+ LSGG++ RL + +
Sbjct: 117 GA---RINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEP 173
Query: 563 TLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
++++DEP + LD S +EE + E K T++ V+H+
Sbjct: 174 EVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHN 212
|
Length = 269 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 4e-08
Identities = 51/208 (24%), Positives = 92/208 (44%), Gaps = 51/208 (24%)
Query: 98 VKLENISKSY---KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++ +N+S Y V +LK ++ + G+ V LVG +G GK+T + ++ +P SG +
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 155 IKAKSNMK----------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIA-GKLERVQKAL 203
+ +++ I +SQE V T+ E I GK + + +
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQE-PVLFDGTIAE----------NIRYGKPDATDEEV 109
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
E A +KA + + L P+ G+ G+R + S G
Sbjct: 110 EEAA-----------------KKANIHDF------IMSL-PD-GYDTLVGER-GSQLSGG 143
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLD 291
+ R+++ + LL++P +LLLDE T+ LD
Sbjct: 144 QKQRIAIARALLRNPKILLLDEATSALD 171
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 4e-08
Identities = 54/225 (24%), Positives = 90/225 (40%), Gaps = 40/225 (17%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
L+N+S G +L +V + + KGE V L+G +G GK+T L + G
Sbjct: 5 LKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIG-------------- 50
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
L+ +F + + E+ + G L Q AL L
Sbjct: 51 -----ALAGQFSCTGELWLNEQRLDMLPAAQRQIGIL--FQDAL------------LFPH 91
Query: 220 FDLLQRKAQAVNLDTL-DAKVSKLMPELGFTADDG--DRLVASFSSGWQMRMSLGKILLQ 276
+ Q A+ +A+ + L + DG + A+ S G + R++L + LL
Sbjct: 92 LSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLA 151
Query: 277 DPDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPMVIISHDRA 317
P LLLDEP + LD+ +W+ + +P V ++HD
Sbjct: 152 QPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196
|
Length = 213 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 4e-08
Identities = 27/58 (46%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 96 SGVKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
+G+KL+ + KSY G T V+K + +V GE + LVG +G GK+T LR++AG E SG
Sbjct: 2 AGLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSG 59
|
Length = 356 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 4e-08
Identities = 52/232 (22%), Positives = 91/232 (39%), Gaps = 64/232 (27%)
Query: 105 KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------- 154
K G + D + KGE ++G++G+GK+T +R++ EP +G +
Sbjct: 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQ 60
Query: 155 ----IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDM 210
++ KI + Q+F + T+ + ++ E+ + ER +KALE
Sbjct: 61 SPVELREVRRKKIGMVFQQFALFPHMTILQN--TSLGPELLGWPEQERKEKALELL---- 114
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
+L+ + E R S G Q R+ L
Sbjct: 115 ----KLVG------------------------LEEY------EHRYPDELSGGMQQRVGL 140
Query: 271 GKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHD 315
+ L +PD+LL+DE + LD D ++ L+ L K +V I+HD
Sbjct: 141 ARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKT---IVFITHD 189
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 5e-08
Identities = 54/202 (26%), Positives = 86/202 (42%), Gaps = 54/202 (26%)
Query: 104 SKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKI 163
S + LKD+ EV KGE V +VG G+GK++ L + G+ E SG+V S I
Sbjct: 12 SGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS---I 68
Query: 164 AFLSQEFEVSMSRTVREE--FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
A++SQE + + T+RE F F E ER +K +++ + DL
Sbjct: 69 AYVSQEPWI-QNGTIRENILFGKPFDE--------ERYEKVIKACALEPDL--------- 110
Query: 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV-----ASFSSGWQMRMSLGKILLQ 276
+++P DGD + S G + R+SL + +
Sbjct: 111 -------------------EILP-------DGDLTEIGEKGINLSGGQKQRISLARAVYS 144
Query: 277 DPDLLLLDEPTNHLDLDTIEWL 298
D D+ LLD+P + +D +
Sbjct: 145 DADIYLLDDPLSAVDAHVGRHI 166
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 5e-08
Identities = 51/183 (27%), Positives = 82/183 (44%), Gaps = 17/183 (9%)
Query: 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---GEHNVLPNYF 493
R + NL I+ G+ A++G +G GK+TLL++I+G +K RG E G+ V N
Sbjct: 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV 455
Query: 494 EQNQAEALDL---DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDR-KVSLLSGGEK 549
+ + T+LE + D ++ +L R +L R K S LS G+K
Sbjct: 456 SALIPGEYEPEFGEVTILEHLRSKTGD--LNAAVEILNRAGLSDAVLYRRKFSELSTGQK 513
Query: 550 ARLAFCKFMVKPSTLLVLDEPTNHLD------IPSKEMLEEAISEYKGTVITVSHDRYFV 603
R K + + +L++DE HLD + K + E E T+I V+H
Sbjct: 514 ERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARK--ISELAREAGITLIVVTHRPEVG 571
Query: 604 KQI 606
+
Sbjct: 572 NAL 574
|
Length = 593 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 6e-08
Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 100 LENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+EN+S Y G VL++V++ ++ GE + ++G +G+GK+T R+I G P SG V
Sbjct: 3 VENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 6e-08
Identities = 56/231 (24%), Positives = 98/231 (42%), Gaps = 51/231 (22%)
Query: 98 VKLENISKSY---KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++ +++S SY V VLK +T+ + GE V LVG +G+GK+T ++ +P G V
Sbjct: 479 IEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV 538
Query: 155 ---------IKAKS-NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204
+ ++A + QE V S +VRE IA L
Sbjct: 539 LLDGVPLVQYDHHYLHRQVALVGQE-PVLFSGSVRE----------NIAYGLTDTPDEEI 587
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
A A+A N + P G+ + G++ S SG
Sbjct: 588 MAA-------------------AKAANAHDFIME----FPN-GYDTEVGEK--GSQLSGG 621
Query: 265 Q-MRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISH 314
Q R+++ + L++ P +L+LDE T+ LD + + L+ + +++I+H
Sbjct: 622 QKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAH 672
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 6e-08
Identities = 55/225 (24%), Positives = 93/225 (41%), Gaps = 65/225 (28%)
Query: 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVR 179
K+G+ G++G NG GKTT ++I++G+ P+ G+ + E S ++
Sbjct: 96 PKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEE--------------EPSWDEVLK 141
Query: 180 E----EFMSAFKE----EMEIAGKLERVQ---KALESAVDDMDLMGRLL---DEFDLLQR 225
E + FK+ E+++ K + V K + V LL DE L
Sbjct: 142 RFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKV------RELLKKVDERGKLDE 195
Query: 226 KAQAVNLDT-LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
+ + L+ LD +S+L S G R+++ LL+D D D
Sbjct: 196 VVERLGLENILDRDISEL------------------SGGELQRVAIAAALLRDADFYFFD 237
Query: 285 EPTNHLDL-------DTIEWLEGYLGKQDVPMVIISHDRAFLDQL 322
EPT++LD+ I L + ++++ HD A LD L
Sbjct: 238 EPTSYLDIRQRLNVARLIREL-----AEGKYVLVVEHDLAVLDYL 277
|
Length = 590 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 6e-08
Identities = 58/228 (25%), Positives = 105/228 (46%), Gaps = 50/228 (21%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMK--------- 162
+LK +++ ++ GE +G++G +G+GK+T R++ G P SG+V ++++
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGR 410
Query: 163 -IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
I +L Q+ E+ T+ E ++ F EE + +K +E+A RL +
Sbjct: 411 HIGYLPQDVEL-FDGTIAEN-IARFGEEAD-------PEKVIEAA--------RLAGVHE 453
Query: 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLL 281
L+ R Q DT + G A+ S G + R++L + L DP L+
Sbjct: 454 LILRLPQG--YDTR-------------IGEGG----ATLSGGQRQRIALARALYGDPFLV 494
Query: 282 LLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKI 326
+LDEP ++LD + L + + +V+I+H R KI
Sbjct: 495 VLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAH-RPSALASVDKI 541
|
Length = 580 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 6e-08
Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 39/206 (18%)
Query: 98 VKLENISKSYKGVT-----VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
+ L N +K++ T L ++ E+ +G+ V ++G NGAGK+T L IAG +P SG
Sbjct: 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG 61
Query: 153 NV------IKAKSNMKIA-FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
+ + KS K A L++ F+ ++ T E ++ E + +A + ++ L S
Sbjct: 62 QILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPE--LTIE-ENLALA-ESRGKKRGLSS 117
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
A L R F + + L ++ L S G +
Sbjct: 118 A-----LNERRRSSFRERLARLGLGLENRLSDRIGLL------------------SGGQR 154
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLD 291
+SL L P +LLLDE T LD
Sbjct: 155 QALSLLMATLHPPKILLLDEHTAALD 180
|
Length = 263 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 7e-08
Identities = 53/227 (23%), Positives = 86/227 (37%), Gaps = 64/227 (28%)
Query: 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI------------- 155
G VLK + + ++GE + L+G NGAGK+T L + G P SG V+
Sbjct: 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGL 63
Query: 156 -KAKSNMKIAFLS---QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD 211
+ + + + F Q F + + V ++ E E+ RV++AL AV
Sbjct: 64 LERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVE---RRVREALT-AVGASG 119
Query: 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271
L R ++K R+++
Sbjct: 120 LRERPTHCLSGGEKK----------------------------------------RVAIA 139
Query: 272 KILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHD 315
+ PD+LLLDEPT LD E + L + + + +VI +HD
Sbjct: 140 GAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHD 186
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 7e-08
Identities = 57/229 (24%), Positives = 103/229 (44%), Gaps = 50/229 (21%)
Query: 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMK-------- 162
L+ +++ ++ GE + ++G +G+GK+T R+I G P SG+V +++K
Sbjct: 332 PTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFG 391
Query: 163 --IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEF 220
I +L Q+ E+ TV E ++ F E + +K +E+A +L
Sbjct: 392 KHIGYLPQDVEL-FPGTVAEN-IARFGENAD-------PEKIIEAA--------KLAGVH 434
Query: 221 DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280
+L+ R G+ G A+ S G + R++L + L DP L
Sbjct: 435 ELILRLPD------------------GYDTVIGPG-GATLSGGQRQRIALARALYGDPKL 475
Query: 281 LLLDEPTNHLDLDTIEWLE---GYLGKQDVPMVIISHDRAFLDQLCTKI 326
++LDEP ++LD + + L L + + +V+I+H R L KI
Sbjct: 476 VVLDEPNSNLDEEGEQALANAIKALKARGITVVVITH-RPSLLGCVDKI 523
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 7e-08
Identities = 60/240 (25%), Positives = 101/240 (42%), Gaps = 75/240 (31%)
Query: 102 NISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV------ 154
++ SY G LK + ++ +KGE V L+G NGAGK+T G +P SG V
Sbjct: 6 DLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEP 65
Query: 155 --------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAF--------KEEMEIAGKLER 198
++ + + I F + + ++ + TV E+ AF KEE+E +R
Sbjct: 66 IKYDKKSLLEVRKTVGIVFQNPDDQL-FAPTVEEDV--AFGPLNLGLSKEEVE-----KR 117
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
V++AL +AV ++ + K
Sbjct: 118 VKEAL------------------------KAVGMEGFENKPPH----------------- 136
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQDVPMVIISHD 315
S G + R+++ IL P++++LDEPT+ LD I L L K+ + ++I +HD
Sbjct: 137 HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHD 196
|
Length = 275 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 7e-08
Identities = 55/234 (23%), Positives = 102/234 (43%), Gaps = 41/234 (17%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
++++ ++ L + + +L I GE A++GP+G GKSTLL+ + GL G+
Sbjct: 2 QTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT---GDK 58
Query: 482 LLGEH-NVLPNYFEQNQAEALDLDK------------------TVLETVAEAAED----W 518
G H +L ++ A D+ K +VLE V A W
Sbjct: 59 SAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFW 118
Query: 519 R--------IDDIKGL--LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568
R + L L R ++VS LSGG++ R+A + +++ + +++ D
Sbjct: 119 RTCFSWFTREQKQRALQALTRVGM-VHFAHQRVSTLSGGQQQRVAIARALMQQAKVILAD 177
Query: 569 EPTNHLDIPSKEMLEEA---ISEYKG-TVITVSHDRYFVKQIVNRVVEVKGSNL 618
EP LD S ++ + I++ G TV+ H + + R+V ++ ++
Sbjct: 178 EPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHV 231
|
Length = 262 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 9e-08
Identities = 59/241 (24%), Positives = 96/241 (39%), Gaps = 63/241 (26%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV------IKAKSNMK--- 162
VL D+ E+ GE V L G +G+GKTT L +I G G++ + S +
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 163 ----IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
I ++ Q + T R+ VQ ALE L
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQN-----------------VQMALE-----------LQP 111
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL---VASFSSGWQMRMSLGKILL 275
+ + +A ++ +G GD L + S G + R+++ + L+
Sbjct: 112 NLSYQEARERA----------RAMLEAVGL----GDHLDYYPHNLSGGQKQRVAIARALV 157
Query: 276 QDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM 331
P L+L DEPT LD D +E ++ +Q ++I++HD LD + +IV E
Sbjct: 158 HRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILD-VADRIVHMED 216
Query: 332 G 332
G
Sbjct: 217 G 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 21/58 (36%), Positives = 37/58 (63%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++ +N+SK + VL ++ + +GE V ++G +G+GK+T LR I EE SG++I
Sbjct: 2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI 59
|
Length = 240 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 1e-07
Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 20/155 (12%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-----------VLPNY 492
+ +E+G+ A+ G G GKS+LL +IMG +P G++ +H+ ++P
Sbjct: 446 SFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI---KHSGRISFSPQTSWIMPGT 502
Query: 493 FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARL 552
+ N L D+ +V +A + +DI + K + + ++ LSGG++AR+
Sbjct: 503 IKDNIIFGLSYDEYRYTSVIKACQ--LEEDIALFPEKD--KTVLGEGGIT-LSGGQRARI 557
Query: 553 AFCKFMVKPSTLLVLDEPTNHLDIPS-KEMLEEAI 586
+ + + K + L +LD P HLD+ + KE+ E +
Sbjct: 558 SLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCL 592
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 1e-07
Identities = 59/217 (27%), Positives = 95/217 (43%), Gaps = 54/217 (24%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMGLE 474
SV ++ ++ Y L +L I + A IGP+GCGKSTLL+ LI G +
Sbjct: 18 HSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAK 77
Query: 475 KPRGGEVLLGEHNVL-------------------PNYFEQNQAEAL-----------DLD 504
G +L + N+ PN F ++ E + +LD
Sbjct: 78 VE--GRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLD 135
Query: 505 KTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564
+ V +++ AA W +++K D L K + LSGG++ RL + + +
Sbjct: 136 ELVEDSLRRAA-IW--EEVK----------DKLKEKGTALSGGQQQRLCIARAIAMKPDV 182
Query: 565 LVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
L++DEP + LD S +EE E K T+I V+H+
Sbjct: 183 LLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHN 219
|
Length = 274 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 1e-07
Identities = 55/246 (22%), Positives = 93/246 (37%), Gaps = 65/246 (26%)
Query: 425 VTIKNLEFGYEDRL-----LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
+ +KN+ + +L + ++ I +GE AIIG G GK+T ++ + L P G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 480 EVLLGEHNVLPNYF---EQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCN----- 531
+ + E+N+ + + +K + + V + +I IK + R
Sbjct: 63 TI---------EWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQF 113
Query: 532 -----FKA-----------------------------------DMLDRKVSLLSGGEKAR 551
F+ L R LSGG+K R
Sbjct: 114 AEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRR 173
Query: 552 LAFCKFMVKPSTLLVLDEPTNHLD-IPSKEMLE--EAISEYKGTVITVSHDRYFVKQIVN 608
+A + LV DEPT LD KE+LE + +++ T+I V+HD V +
Sbjct: 174 VALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTK 233
Query: 609 RVVEVK 614
R + K
Sbjct: 234 RTIFFK 239
|
Length = 305 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 110/565 (19%), Positives = 217/565 (38%), Gaps = 123/565 (21%)
Query: 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQ----LRII-AGQEEPDSGNVIKAKSNMKIA 164
+ ++++++ +++GE + +VG +G+GK+ +R++ ++ + + ++
Sbjct: 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVI 88
Query: 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQ 224
LS++ M + F+E M L V E + + L E +++
Sbjct: 89 ELSEQSAAQMRHVRGADMAMIFQEPMT---SLNPVFTVGEQIAESIRLHQGASREEAMVE 145
Query: 225 RKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
K LD + ++ + R S G + R+ + L P +L+ D
Sbjct: 146 AKRM---LDQVRIPEAQTILS---------RYPHQLSGGMRQRVMIAMALSCRPAVLIAD 193
Query: 285 EPTNHLD-------LDTIEWLEGYLGKQDVPM--VIISHDRAFLDQLCTKIVETEMGVSR 335
EPT LD L I+ L+ +++ M + I+HD MGV
Sbjct: 194 EPTTALDVTIQAQILQLIKVLQ-----KEMSMGVIFITHD---------------MGV-- 231
Query: 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQ---------TKDL---INRLGA--GAN 381
V E A + Y + +EQ T+ L + +LGA G +
Sbjct: 232 ---------VAEIADRVLVMYQGEAVETGSVEQIFHAPQHPYTRALLAAVPQLGAMKGLD 282
Query: 382 SGRASSAEKKLERLQEEEQIE-------KP-FQRKQMKIRFPERG----RSGRSVVTIKN 429
R ++E IE +P Q + + RFP R R R V ++
Sbjct: 283 YPRRFPLISLEHPAKQEPPIEQDTVVDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEK 342
Query: 430 LEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV- 488
+ F + GE +++G +G GKST + ++ L + +GGE++ +
Sbjct: 343 VSF-------------DLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRID 389
Query: 489 -LP-----------NYFEQNQAEALDLDKTVLETVAEAAEDWRIDD-------IKGLLGR 529
L + Q+ +LD +TV +++ E + + LL R
Sbjct: 390 TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLER 449
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK----EMLEEA 585
+ R SGG++ R+ + + +++ DE + LD+ + +L +
Sbjct: 450 VGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDL 509
Query: 586 ISEYKGTVITVSHDRYFVKQIVNRV 610
++ + +SHD V++I +RV
Sbjct: 510 QRDFGIAYLFISHDMAVVERISHRV 534
|
Length = 623 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 56/226 (24%), Positives = 109/226 (48%), Gaps = 36/226 (15%)
Query: 95 SSGVKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
S V+L NI+ Y + ++++ + ++ G++V LVG +G+GK+T +++AG +P SG
Sbjct: 475 SGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG 534
Query: 153 NVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQK---ALESAV-D 208
I F E + R V +A + V + E V D
Sbjct: 535 E---------ILFDGIPRE-EIPREV-------------LANSVAMVDQDIFLFEGTVRD 571
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
++ L + + DL++ A D + ++ EL A+ G A+ S G + R+
Sbjct: 572 NLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAEL---AEGG----ANLSGGQRQRL 624
Query: 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISH 314
+ + L+++P +L+LDE T+ LD +T + ++ L ++ +I++H
Sbjct: 625 EIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAH 670
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 2e-07
Identities = 50/202 (24%), Positives = 83/202 (41%), Gaps = 50/202 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
V+L+ I SY + D+T +GE +VG +G+GK+T L +IAG E P SG V+
Sbjct: 1 VRLDKIRFSYGEQPMHFDLT--FAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLIN 58
Query: 158 KSNMK--------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
++ ++ L QE + TV + +++ ++A+E A+
Sbjct: 59 GVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLT---AEDRQAIEVALAR 115
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+ L G RL S G + R++
Sbjct: 116 VGLAGLEK-------------------------------------RLPGELSGGERQRVA 138
Query: 270 LGKILLQDPDLLLLDEPTNHLD 291
L ++L++D +LLLDEP LD
Sbjct: 139 LARVLVRDKPVLLLDEPFAALD 160
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 22/58 (37%), Positives = 40/58 (68%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+++ N++KS+ G + DV+ + KGE L+G +G GK+T LR++AG E+P +G ++
Sbjct: 20 LEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIM 77
|
Length = 377 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 2e-07
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 104 SKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ--EEPDSG-------NV 154
SKS K +LK+V+ + K GE ++G +GAGK+T L +AG+ SG +
Sbjct: 18 SKSGK--QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL 75
Query: 155 IKAKSNMKIAFLSQEFEVSMSRTVREEFM 183
K I ++ Q+ + + TVRE M
Sbjct: 76 DKRSFRKIIGYVPQDDILHPTLTVRETLM 104
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 2e-07
Identities = 23/62 (37%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 95 SSGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
S ++++ ++ Y+ G +L DV+ +++ GE V +VG +G+GK+T LR++ G E P+SG
Sbjct: 449 SGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESG 508
Query: 153 NV 154
+V
Sbjct: 509 SV 510
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-07
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+ K Y GV L VK+GE +G+VG NG GKTT ++I+AGQ P+ N
Sbjct: 1 QLYPDCVKRY-GVFFLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDND 56
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 70/216 (32%)
Query: 100 LENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
L++I +SY V VLK ++ ++ GE V +VG +G+GK+T + I+ ++P SG
Sbjct: 7 LKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYR 66
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK-----------EEMEI------AGKLER 198
A + +A L + ++++ RE F F+ + +E+ + +R
Sbjct: 67 VAGQD--VATLDAD---ALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQR 121
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL-- 256
+ +A E LLQR LG DR+
Sbjct: 122 LLRAQE-----------------LLQR--------------------LGL----EDRVEY 140
Query: 257 -VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
+ S G Q R+S+ + L+ ++L DEPT LD
Sbjct: 141 QPSQLSGGQQQRVSIARALMNGGQVILADEPTGALD 176
|
Length = 648 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 2e-07
Identities = 50/235 (21%), Positives = 86/235 (36%), Gaps = 46/235 (19%)
Query: 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
+ ++++ L Y + + GE I+G +G GK+TLLK I G P G
Sbjct: 2 MDKPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAG 61
Query: 480 EVLLGEHNVLP-------------------NYFEQNQAEALDLDKTVLETVAE------- 513
V + P + QN + L + + + E
Sbjct: 62 TVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGA 121
Query: 514 --------AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565
A+DW L D +D SGG + RL + +V L+
Sbjct: 122 RHYGNIRAEAQDW--------LEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLV 173
Query: 566 VLDEPTNHLDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGS 616
+DEPT LD+ + ++L + E V+ V+HD + + +R++ +K
Sbjct: 174 FMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQG 228
|
Length = 258 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 3e-07
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR 316
S G Q R++L + L DPD+LLLDEPT+ LD T + L + +V+++HD
Sbjct: 102 SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL 161
Query: 317 AFLDQLCTKIV 327
+L ++V
Sbjct: 162 DEAARLADRVV 172
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPM 309
RL S G + R+++G+ LL P LLL+DEP LD + + +LE + +P+
Sbjct: 126 GRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPI 185
Query: 310 VIISHD 315
+ +SH
Sbjct: 186 LYVSHS 191
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 60/229 (26%), Positives = 100/229 (43%), Gaps = 65/229 (28%)
Query: 109 GVTV-LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------IKAK 158
G+ V + D + +V++GE ++G++G+GK+T +R++ EP G + + A
Sbjct: 39 GLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAA 98
Query: 159 S-----NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
KI+ + Q F + RTV E AF E++ K ER ++ALE+ ++L+
Sbjct: 99 ELRELRRKKISMVFQSFALLPHRTVLEN--VAFGLEVQGVPKAEREERALEA----LELV 152
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
G L+ + D+ S G Q R+ L +
Sbjct: 153 G--LEGYA--------------------------------DKYPNELSGGMQQRVGLARA 178
Query: 274 LLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHD 315
L DPD+LL+DE + LD D + L+ L K +V I+HD
Sbjct: 179 LANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKT---IVFITHD 224
|
Length = 386 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 3e-07
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++K Y +DV++++ GE +G+VG +G+GKTT L ++ + PD+G V
Sbjct: 10 RGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVH 64
|
Length = 258 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 3e-07
Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 29/200 (14%)
Query: 424 VVTIKNLEFGYEDRL-LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ ++N+ + Y D NL I++GE IIG NG GKSTL + GL +P+ G+VL
Sbjct: 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60
Query: 483 L-----GEHNVLPNYFE------QNQAEALDLDKTVLETVAEAAEDW---------RIDD 522
+ G+ + L + QN E + +TV E +A E+ R+D
Sbjct: 61 VSGIDTGDFSKLQGIRKLVGIVFQN-PETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDR 119
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML 582
+G ++ R LSGG+ +A + L+ DE T+ LD S +
Sbjct: 120 ALAEIGLEKYR----HRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAV 175
Query: 583 EEAISEY--KG-TVITVSHD 599
E I + KG T++ ++H+
Sbjct: 176 LERIKKLHEKGKTIVYITHN 195
|
Length = 274 |
| >gnl|CDD|213245 cd03278, ABC_SMC_barmotin, ATP-binding cassette domain of barmotin, a member of the SMC protein family | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 4e-07
Identities = 47/170 (27%), Positives = 70/170 (41%), Gaps = 40/170 (23%)
Query: 453 TAIIGPNGCGKSTL---LKLIMGLEKP---RGGE----VLLGEHNVLPNYFEQNQAEA-- 500
TAI+GPNG GKS + ++ ++G + RG + + G P N AE
Sbjct: 25 TAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP----ANFAEVTL 80
Query: 501 -LDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKV---SLLSGGEKARLA--- 553
D +++ + +I + +KV SLLSGGEKA A
Sbjct: 81 TFDNSDGRYSIISQG----DVSEI----------IEAPGKKVQRLSLLSGGEKALTALAL 126
Query: 554 -FCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTV--ITVSHDR 600
F F V+PS VLDE LD + E + E+ I ++H +
Sbjct: 127 LFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRK 176
|
Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18). Length = 197 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 5e-07
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 11/81 (13%)
Query: 100 LENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ N+S SY VLK+++ E+K+GEK+ L+G +G+GK+T L+++ G +P G +
Sbjct: 3 INNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLD 62
Query: 158 KSNM---------KIAFLSQE 169
+ I+ L+Q
Sbjct: 63 GVPVSDLEKALSSLISVLNQR 83
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 5e-07
Identities = 41/169 (24%), Positives = 78/169 (46%), Gaps = 26/169 (15%)
Query: 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPNYFEQNQAEALD 502
G+ AI+GP G GKSTL+ L+ + P+ G +L+ ++ L +A
Sbjct: 361 GQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGL 420
Query: 503 LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKV-----------SLLSGGEKAR 551
++++ + + D ++++ R D ++RK LSGGE+ R
Sbjct: 421 FNRSIEDNIRVGRPDATDEEMRAAAERAQ-AHDFIERKPDGYDTVVGERGRQLSGGERQR 479
Query: 552 LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDR 600
LA + ++K +L+LDE T+ LD+ ++ ++ A+ E + R
Sbjct: 480 LAIARALLKDPPILILDEATSALDVETEAKVKAALDE-------LMKGR 521
|
Length = 588 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 5e-07
Identities = 50/255 (19%), Positives = 108/255 (42%), Gaps = 27/255 (10%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLR----IIAGQEEPDSGN 153
+++E ++K++ L V + GE V L+G +G+GK+T LR +I G + S
Sbjct: 5 IRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHI 64
Query: 154 VIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
+ ++ + L+++ S + T ++ + +L ++ L A+
Sbjct: 65 ELLGRTVQREGRLARDIRKSRANT------GYIFQQFNLVNRLSVLENVLIGALGSTPFW 118
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
F Q++ + + + +G + V++ S G Q R+++ +
Sbjct: 119 RTCFSWFTREQKQ-----------RALQALTRVGM-VHFAHQRVSTLSGGQQQRVAIARA 166
Query: 274 LLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVET 329
L+Q ++L DEP LD ++ ++ L + +V+ H + + C +IV
Sbjct: 167 LMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVAL 226
Query: 330 EMGVSRTYEGNYSQY 344
G Y+G+ Q+
Sbjct: 227 RQG-HVFYDGSSQQF 240
|
Length = 262 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 5e-07
Identities = 22/58 (37%), Positives = 38/58 (65%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ + +SK Y +DV++++ GE +G+VG +G+GKTT L+ I+G+ PD+G V
Sbjct: 7 LSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVT 64
|
Length = 258 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 5e-07
Identities = 51/202 (25%), Positives = 83/202 (41%), Gaps = 48/202 (23%)
Query: 434 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---- 489
Y + + +++ I + E T IGP+GCGKST+L+ + + G G + L
Sbjct: 18 YGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDV 77
Query: 490 --------------------PNYFE----QNQAEALDLDK------TVLETVAEAAEDWR 519
PN F N A L L++ ++ + A W
Sbjct: 78 YGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALW- 136
Query: 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK 579
D++K L K L LSGG++ RL + + +L+LDEP + LD +
Sbjct: 137 -DEVKDKL-----KVSGLS-----LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIAT 185
Query: 580 EMLEEAISEYKG--TVITVSHD 599
+EE + E K T+ V+H+
Sbjct: 186 RRVEELMVELKKDYTIALVTHN 207
|
Length = 261 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 5e-07
Identities = 56/206 (27%), Positives = 89/206 (43%), Gaps = 56/206 (27%)
Query: 434 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG--------------G 479
Y DR + + + + GE I+GPNG GKSTLL LI G + P+G G
Sbjct: 270 YNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG-DHPQGYSNDLTLFGRRRGSG 328
Query: 480 EVL--LGEH-------------------NV-LPNYFEQNQAEALDLDKTVLETVAEAAED 517
E + + +H NV L +F +++ + + V + + A+
Sbjct: 329 ETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFF-----DSIGIYQAVSDRQQKLAQQ 383
Query: 518 WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF-CKFMVKPSTLLVLDEPTNHLDI 576
W L D LS G++ RLA + +VK TLL+LDEP LD
Sbjct: 384 W--------LDILGIDKRTADAPFHSLSWGQQ-RLALIVRALVKHPTLLILDEPLQGLDP 434
Query: 577 PSKEM----LEEAISEYKGTVITVSH 598
++++ ++ ISE + ++ VSH
Sbjct: 435 LNRQLVRRFVDVLISEGETQLLFVSH 460
|
Length = 490 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 5e-07
Identities = 57/191 (29%), Positives = 86/191 (45%), Gaps = 61/191 (31%)
Query: 453 TAIIGPNGCGKSTLLKLIMGLEK--PRG---GEVLLGEHNVL------------------ 489
TAIIGP+GCGKST+L+ I + P G++LL + ++
Sbjct: 33 TAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQ 92
Query: 490 -PNYFEQ-----------------NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCN 531
PN F N++EA ++ ++ L+ VA W D++K
Sbjct: 93 KPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVAL----W--DEVK------- 139
Query: 532 FKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK 590
D L LSGG++ RL + + VKP +L +DEP + LD S +EE I E K
Sbjct: 140 ---DRLKSNAMELSGGQQQRLCIARTIAVKPEVIL-MDEPASALDPISTLKIEELIEELK 195
Query: 591 G--TVITVSHD 599
T+I V+H+
Sbjct: 196 EKYTIIIVTHN 206
|
Length = 252 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 5e-07
Identities = 49/193 (25%), Positives = 90/193 (46%), Gaps = 27/193 (13%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL-LGEH-------------NVL 489
L + GE ++G +GCGKST + I+GL K GEV LG+ + +
Sbjct: 41 TLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDI 100
Query: 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWR--------IDDIKGLLGRCNFKADMLDRKV 541
F Q+ +L+ T+ E +AE + D +K ++ + ++++R
Sbjct: 101 QMIF-QDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYP 159
Query: 542 SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK----EMLEEAISEYKGTVITVS 597
SGG+ R+ + ++ L++ DEP + LD+ + +L++ E ++I ++
Sbjct: 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIA 219
Query: 598 HDRYFVKQIVNRV 610
HD VK I +RV
Sbjct: 220 HDLAVVKHISDRV 232
|
Length = 331 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 5e-07
Identities = 61/252 (24%), Positives = 112/252 (44%), Gaps = 50/252 (19%)
Query: 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKL----------- 469
G + +++++L+ Y D ++ I TA+IGP+GCGKST L+
Sbjct: 42 GDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAA 101
Query: 470 -IMGLEKPRGGEVLLGEHNVL------------PNYFEQNQAEAL--------DLDKTVL 508
I G + G ++ N++ PN F ++ E + D++ +L
Sbjct: 102 RIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLL 161
Query: 509 ETVAEAAEDWRIDDIKGLLGRCNFKA-------DMLDRKVSLLSGGEKARLAFCKFMVKP 561
+ + D+ L+ R +A D LD LSGG++ RL + +
Sbjct: 162 ARLLGRDDKDAEDE---LVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVD 218
Query: 562 STLLVLDEPTNHLD--IPSK--EMLEEAISEYKGTVITVSHDRYFVKQIVNRV-VEVKGS 616
++++DEP + LD SK +++EE EY TV+ V+H+ +I ++ V + G
Sbjct: 219 PEVILMDEPASALDPIATSKIEDLIEELAEEY--TVVVVTHNMQQAARISDQTAVFLTGG 276
Query: 617 NLQDYAGDYNQV 628
L +Y D +++
Sbjct: 277 ELVEY-DDTDKI 287
|
Length = 305 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 6e-07
Identities = 46/203 (22%), Positives = 86/203 (42%), Gaps = 36/203 (17%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-IK 156
++ + +S S G +LKD++ + + G +VG +GAGK+T +++I +P G++ I
Sbjct: 4 IEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILID 63
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
I + ++ M F K+ +E G + + +K
Sbjct: 64 GVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEY-GPMLKGEK--------------- 107
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
+ V + +G + R V + S G R+S+ + L
Sbjct: 108 -------------------NVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLAN 148
Query: 277 DPDLLLLDEPTNHLDLDTIEWLE 299
+P++LLLDEPT+ LD + E +E
Sbjct: 149 NPEVLLLDEPTSALDPTSTEIIE 171
|
Length = 241 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (122), Expect = 6e-07
Identities = 45/199 (22%), Positives = 91/199 (45%), Gaps = 29/199 (14%)
Query: 98 VKLENISKSYK-----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
+K E ++ +Y+ L D+ EVKKG L+G G+GK+T L+ + G +P G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 153 NVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDL 212
V ++ +S T +++ + ++++ + + Q E+ + D+
Sbjct: 62 KV-------------TVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAF 108
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
+ F + + KA+ + + L+ +G + ++ S G R+++
Sbjct: 109 GPQ---NFGIPKEKAEKIAAEKLEM--------VGLADEFWEKSPFELSGGQMRRVAIAG 157
Query: 273 ILLQDPDLLLLDEPTNHLD 291
IL +P++L+LDEPT LD
Sbjct: 158 ILAMEPEVLVLDEPTAGLD 176
|
Length = 288 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 6e-07
Identities = 61/245 (24%), Positives = 112/245 (45%), Gaps = 44/245 (17%)
Query: 388 AEKKLERLQEEEQIEKPFQRKQMKIRFPERGRS-GRSVVTIKNLE-FGYEDRLLFNRANL 445
AE+++ L E+ IE RK ++ ++P ++ G + + NL G D +
Sbjct: 221 AEREVADLTEDSLIEMMVGRK-LEDQYPRLDKAPGEVRLKVDNLSGPGVND------VSF 273
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN-----------YF- 493
T+ +GE + G G G++ L+K++ G G V L H V+ Y
Sbjct: 274 TLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYIS 333
Query: 494 EQNQAEALDLDKTVLETVA---------------EAAEDWRIDDIKGLLGRCNFKADMLD 538
E + + L L +V E ++ A E + D L N K ++
Sbjct: 334 EDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLF---NIKTPSME 390
Query: 539 RKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVI 594
+ + LLSGG + ++A + M +P +L+LDEPT +D+ +K+ + + I+++K ++I
Sbjct: 391 QAIGLLSGGNQQKVAIARGLMTRPK-VLILDEPTRGVDVGAKKEIYQLINQFKAEGLSII 449
Query: 595 TVSHD 599
VS +
Sbjct: 450 LVSSE 454
|
Length = 501 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 7e-07
Identities = 50/203 (24%), Positives = 87/203 (42%), Gaps = 39/203 (19%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495
+L G+ +IIG +G GKST L+ I LEKP G +++ + ++
Sbjct: 25 SLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADK 84
Query: 496 NQAEALDL-------------DKTVLETVAEA--------AEDWRIDDIKGLLGRCNFKA 534
NQ L TVLE V EA ++ R +K L +
Sbjct: 85 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVK-YLAKVGIDE 143
Query: 535 DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA------ISE 588
+ LSGG++ R++ + + +L+ DEPT+ LD E++ E ++E
Sbjct: 144 RAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALD---PELVGEVLRIMQQLAE 200
Query: 589 YKGTVITVSHDRYFVKQIVNRVV 611
T++ V+H+ F + + + V+
Sbjct: 201 EGKTMVVVTHEMGFARHVSSHVI 223
|
Length = 257 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 7e-07
Identities = 41/160 (25%), Positives = 53/160 (33%), Gaps = 48/160 (30%)
Query: 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVL 508
G T I GPNG GKST+L I + LG +A
Sbjct: 20 EGSLTIITGPNGSGKSTILDAI---------GLALGGAQSATRRRSGVKA---------- 60
Query: 509 ETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSL--LSGGEKARLAFCKFM----VKPS 562
C A + + LSGGEK A + +KP
Sbjct: 61 --------------------GCIVAAVSAELIFTRLQLSGGEKELSALALILALASLKPR 100
Query: 563 TLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHD 599
L +LDE LD + L EAI E+ VI ++H
Sbjct: 101 PLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHL 140
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 8e-07
Identities = 50/209 (23%), Positives = 91/209 (43%), Gaps = 53/209 (25%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
V+ N++ Y G L ++ ++ GE V LVG +G+GK+T + +I EPDSG ++
Sbjct: 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQIL 390
Query: 156 K----------AKSNMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKA 202
A ++A +SQ+ F +++ + E A + +++A
Sbjct: 391 LDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIA-------YGRTEQADR-AEIERA 442
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262
L +A D + +L D +G ++G L S
Sbjct: 443 LAAA-YAQDFVDKLPLGLDT----------------------PIG---ENGVLL----SG 472
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
G + R+++ + LL+D +L+LDE T+ LD
Sbjct: 473 GQRQRLAIARALLKDAPILILDEATSALD 501
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 8e-07
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
L DV++ VK+GE + ++G NG+GK+T +R+I G E +SG +I
Sbjct: 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQII 65
|
Length = 279 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 8e-07
Identities = 58/250 (23%), Positives = 107/250 (42%), Gaps = 87/250 (34%)
Query: 98 VKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
+++E+IS Y LKDV++ V +GE V +VG NG+GK+T +++ G P++G +
Sbjct: 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT 65
Query: 155 -------------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAF--------KEEMEIA 193
++ + M +F + TV+++ AF +EEM
Sbjct: 66 VGGMVLSEETVWDVRRQVGMVFQNPDNQF---VGATVQDDV--AFGLENIGVPREEM--- 117
Query: 194 GKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL-DTLDAKVSKLMPELGFTADD 252
+ERV +AL V + D L+ + +L
Sbjct: 118 --VERVDQALRQ------------------------VGMEDFLNREPHRL---------- 141
Query: 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQ 305
S G + R+++ +L PD+++LDE T+ LD L+T+ L+ ++
Sbjct: 142 --------SGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLK---EQK 190
Query: 306 DVPMVIISHD 315
+ ++ I+HD
Sbjct: 191 GITVLSITHD 200
|
Length = 279 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 8e-07
Identities = 46/212 (21%), Positives = 76/212 (35%), Gaps = 46/212 (21%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
+++ L Y R + + GE I+G +G GK+TLL + P GEV
Sbjct: 8 SVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRM 67
Query: 486 HNVLPN-------------------YFEQNQAEALDLDKTVLETVAE------------- 513
+ + Q+ + L + + + E
Sbjct: 68 RDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDI 127
Query: 514 --AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571
A DW L R A +D + SGG + RL + +V L+ +DEPT
Sbjct: 128 RATAGDW--------LERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPT 179
Query: 572 NHLDIPSK----EMLEEAISEYKGTVITVSHD 599
LD+ + ++L + E V+ V+HD
Sbjct: 180 GGLDVSVQARLLDLLRGLVRELGLAVVIVTHD 211
|
Length = 258 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 9e-07
Identities = 53/200 (26%), Positives = 92/200 (46%), Gaps = 34/200 (17%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503
NLT+ GE A++G NG GKSTL+K++ G+ +P G + + NY + + A L
Sbjct: 25 NLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNI----NYNKLDHKLAAQL 80
Query: 504 -------------DKTVLETV-----------AEAAEDWRIDDIKG--LLGRCNFKADML 537
+ TVLE + DWR ++ +L R K D L
Sbjct: 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD-L 139
Query: 538 DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVI 594
D KV+ LS K L K ++ + ++++DEPT+ L + L +++ + ++
Sbjct: 140 DEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIV 199
Query: 595 TVSHDRYFVKQIVNRVVEVK 614
+SH +++I +R +K
Sbjct: 200 YISHKLAEIRRICDRYTVMK 219
|
Length = 510 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 9e-07
Identities = 56/227 (24%), Positives = 101/227 (44%), Gaps = 35/227 (15%)
Query: 409 QMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468
Q ++ E+G S ++ L G +D A+L IE GE I+G +G GKST+++
Sbjct: 19 QRAFKYIEQGLSKEQILEKTGLSLGVKD------ASLAIEEGEIFVIMGLSGSGKSTMVR 72
Query: 469 LIMGLEKPRGGEVLLGEHN-------------------VLPNYFEQNQAEALDLDKTVLE 509
L+ L +P G+VL+ + V ++ LD +E
Sbjct: 73 LLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGME 132
Query: 510 TVAEAAEDWRIDDIKGL--LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567
AE+ R + L +G N+ D LSGG + R+ + + +L++
Sbjct: 133 LAGINAEERREKALDALRQVGLENYAHSYPDE----LSGGMRQRVGLARALAINPDILLM 188
Query: 568 DEPTNHLD-IPSKEMLEEAI---SEYKGTVITVSHDRYFVKQIVNRV 610
DE + LD + EM +E + ++++ T++ +SHD +I +R+
Sbjct: 189 DEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRI 235
|
Length = 400 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 9e-07
Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 32/195 (16%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR----GGEVLLGEHNVLPN-------- 491
NL+++RGE A++G +G GKS I+GL P GE+LL +LP
Sbjct: 6 NLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIA 65
Query: 492 YFEQNQAEALDLDKTVLETVAE-AAEDWRI-----DDIKGLLGRCNFKADMLDRKVSL-- 543
QN A L T+ A E R + L+ + D + L
Sbjct: 66 TIMQNPRTAF----NPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKK 121
Query: 544 ----LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK----EMLEEAISEYKGTVIT 595
LSGG R+ ++ L+ DEPT LD+ ++ ++L E + ++
Sbjct: 122 YPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILL 181
Query: 596 VSHDRYFVKQIVNRV 610
++HD V +I + V
Sbjct: 182 ITHDLGVVARIADEV 196
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 1e-06
Identities = 47/216 (21%), Positives = 86/216 (39%), Gaps = 38/216 (17%)
Query: 413 RFPER--GRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
FPE G V+ ++NL G + + T+ GE I G G G++ L + +
Sbjct: 250 LFPEPPEEGIGEPVLEVRNLSGGGK----VRDVSFTVRAGEILGIAGLVGAGRTELARAL 305
Query: 471 MGLEKPRGGEVLL-GEHNVLPNYFEQNQA-----------EALDLDKTVLETVA------ 512
G GE+LL G+ + + + +A E L LD ++ E +
Sbjct: 306 FGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRR 365
Query: 513 --------EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564
E + L K ++ + LSGG + ++ +++ +
Sbjct: 366 FSRRGLIDRRKERALAERYIRRL---RIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKV 422
Query: 565 LVLDEPTNHLDIPSKEMLEEAISEY--KG-TVITVS 597
L+LDEPT +D+ +K + I E +G ++ +S
Sbjct: 423 LILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMIS 458
|
Length = 500 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 51/225 (22%), Positives = 102/225 (45%), Gaps = 37/225 (16%)
Query: 98 VKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ +N+S Y+ LKDV++ + KG+ +VG NG+GK+T +++ G E+ SG
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSG--- 64
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKE-EMEIAGKLERVQKALESAVDDMDLMG 214
+I + +Q +R+ F+ + + G + + A
Sbjct: 65 ------EIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVA------------ 106
Query: 215 RLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL 274
F L + AV D + +VS+ + ++ + D + S G + R+++ +L
Sbjct: 107 -----FGL---ENHAVPYDEMHRRVSEALKQVDML-ERADYEPNALSGGQKQRVAIAGVL 157
Query: 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315
+P +++LDE T+ LD D + L + K ++ ++ I+HD
Sbjct: 158 ALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD 202
|
Length = 269 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 55/224 (24%), Positives = 88/224 (39%), Gaps = 62/224 (27%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161
+ +++ V +G+ ++G +G GKTT LR+I GQ PD G ++ N+
Sbjct: 22 IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYT 81
Query: 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
+++ L Q + V + +E ++ L L S V +M
Sbjct: 82 VRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPL------LHSTV----MM----- 126
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
K +AV L +KLMP + S G R +L + + +P
Sbjct: 127 -------KLEAVGL----RGAAKLMP-------------SELSGGMARRAALARAIALEP 162
Query: 279 DLLLLDEPTNHLDLDT-------IEWLEGYLGKQDVPMVIISHD 315
DL++ DEP D T I L LG V V++SHD
Sbjct: 163 DLIMFDEPFVGQDPITMGVLVKLISELNSALG---VTCVVVSHD 203
|
Length = 269 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-06
Identities = 54/206 (26%), Positives = 93/206 (45%), Gaps = 36/206 (17%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKA 157
++++ S + +L+ + EV+ GE ++G NG+GK+T +AG+E E G V
Sbjct: 4 IKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFK 63
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLER--VQKALESAVDDMDLMGR 215
++ E+S E AF+ +EI G + +Q AL +
Sbjct: 64 GKDL--------LELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQ--E 113
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKL-MPELGFTADDGDRLVAS----FSSGWQMRMSL 270
LD FD D ++ K++ L MPE D L S FS G + R +
Sbjct: 114 PLDRFDF---------QDLMEEKIALLKMPE--------DLLTRSVNVGFSGGEKKRNDI 156
Query: 271 GKILLQDPDLLLLDEPTNHLDLDTIE 296
++ + +P+L +LDE + LD+D ++
Sbjct: 157 LQMAVLEPELCILDESDSGLDIDALK 182
|
Length = 248 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 1e-06
Identities = 60/237 (25%), Positives = 106/237 (44%), Gaps = 53/237 (22%)
Query: 98 VKLENISKSYKGVT-----VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
++ +N+S +Y+ T + DV E ++G+ +VG G+GK+T ++ I +P +G
Sbjct: 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTG 62
Query: 153 NV----IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK-EEMEIAGKLERVQKALESAV 207
V I K ++ R VR+ F+ E ++ E V
Sbjct: 63 TVTVDDITITHKTKDKYI---------RPVRKRIGMVFQFPESQL----------FEDTV 103
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFS----SG 263
+ + G K +NLD + +L+ +LGF+ D V S S SG
Sbjct: 104 EREIIFGP----------KNFKMNLDEVKNYAHRLLMDLGFSRD-----VMSQSPFQMSG 148
Query: 264 WQMR-MSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHD 315
QMR +++ IL +PD+++LDEPT LD + L+ ++ ++++SHD
Sbjct: 149 GQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHD 205
|
Length = 286 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 60/236 (25%), Positives = 109/236 (46%), Gaps = 32/236 (13%)
Query: 98 VKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
+K++NI K + + L +V+ E+ +GE + ++G G+GKTT + + PD+G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 153 NVIKAKSNMKIAFLSQEFEVSMSR-TVREEFMSAFKEEMEIAGKLERV-QKA----LESA 206
+ + K ++E E + + +++ K+ EI ++ V Q A E
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122
Query: 207 VDDMDLMGRL---LDEFDLLQRKAQAVNLDTLDAKVSKLMP-ELGFTADDGDRLVASFSS 262
++ + G + + + + +R A+ + L LD + P EL S
Sbjct: 123 IEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFEL--------------SG 168
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLD-LDTIEWLE--GYLGKQDVPMVIISHD 315
G + R++L IL +PD L+ DEPT LD E LE L KQ +++++HD
Sbjct: 169 GQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224
|
Length = 305 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 51/213 (23%), Positives = 83/213 (38%), Gaps = 38/213 (17%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
S + I F D +LT+ G+ A +G NG GKS L + + G GE
Sbjct: 2 SSLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQ 61
Query: 483 LGEHNVLPNYFEQNQ----------------AEALDLDKTVLETVAEAAEDWRIDDIKGL 526
++ FEQ Q D +T E + + +D
Sbjct: 62 SQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKD--------- 112
Query: 527 LGRCNFKA------DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 580
RC A +LDR+ LS GE + C+ ++ LL+LDEP + LD+ S++
Sbjct: 113 PARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQ 172
Query: 581 MLEEAISEYKGTVITVSHDRYFVKQIVNRVVEV 613
L E ++ ++ + ++NR E+
Sbjct: 173 QLAELLA-------SLHQSGITLVLVLNRFDEI 198
|
Length = 490 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 1e-06
Identities = 46/182 (25%), Positives = 86/182 (47%), Gaps = 29/182 (15%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQA----- 498
N+ I G+ T I+G GCGKS+LL I+G + G+V N FE ++
Sbjct: 21 NIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80
Query: 499 ------EALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML-----------DRKV 541
+ L+ TV E + + + K + C+ + D+ +R +
Sbjct: 81 VAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGI 139
Query: 542 SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP-SKEMLEEAISEY----KGTVITV 596
+L SGG++ R+ + + + + ++ LD+P + LDI S +++E I ++ K T++ V
Sbjct: 140 NL-SGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLV 198
Query: 597 SH 598
+H
Sbjct: 199 TH 200
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 54/247 (21%), Positives = 91/247 (36%), Gaps = 41/247 (16%)
Query: 405 FQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDR-----LLFNRANLTIERGEKTAIIGPN 459
K S ++ +KNL ++++ + N + T E+ + IIG +
Sbjct: 2 MDYFMKKKLKVPNPLSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNS 61
Query: 460 GCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD---------LDKTVLET 510
G GKSTL+ GL K + G + +G+ + L + V
Sbjct: 62 GSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRV-SM 120
Query: 511 VAEAAE-----DWRIDDI------------------KGLLGRCNFKADMLDRKVSLLSGG 547
V + E D DI K L + L+R LSGG
Sbjct: 121 VFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGG 180
Query: 548 EKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHDRYFVK 604
+K R+A + +L+ DEPT LD + + + I + K TV ++H V
Sbjct: 181 QKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVL 240
Query: 605 QIVNRVV 611
++ + V+
Sbjct: 241 EVADEVI 247
|
Length = 320 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 63/221 (28%), Positives = 89/221 (40%), Gaps = 64/221 (28%)
Query: 116 VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKI----------AF 165
++ EV+ GE + LVG NGAGK+T L +AG P SG++ A ++ A+
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGL-LPGSGSIQFAGQPLEAWSAAELARHRAY 73
Query: 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQR 225
LSQ+ F M + L Q + +
Sbjct: 74 LSQQ--------QTPPFA------MPVFQYLTLHQPDKTRTEAVASALNEV--------- 110
Query: 226 KAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG-WQMRMSLGKILLQ-DPD---- 279
A+A+ LD KL R V S G WQ R+ L ++LQ PD
Sbjct: 111 -AEALGLD------DKL-----------GRSVNQLSGGEWQ-RVRLAAVVLQVWPDINPA 151
Query: 280 --LLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHD 315
LLLLDEP N LD+ L+ L + Q + +V+ SHD
Sbjct: 152 GQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHD 192
|
Length = 248 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 22/58 (37%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++ EN++ +Y G VLKDV++ + G+KV +VG +G+GK+T LR++ + SG++
Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 52/209 (24%), Positives = 86/209 (41%), Gaps = 64/209 (30%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+KL +I+ Y + + D+T V++GE+V ++G +GAGK+T L +IAG P SG++
Sbjct: 2 LKLTDITWLYHHLPMRFDLT--VERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLN 59
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKE---------EMEIA-G-----KLERVQKA 202
+ S+ VSM F+E I G KL Q+
Sbjct: 60 GQDHTTTPPSRR-PVSM----------LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQR- 107
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262
+ L A+ + ++ L RL S
Sbjct: 108 ------------------EKLHAIARQMGIEDL-----------------LARLPGQLSG 132
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
G + R++L + L+++ +LLLDEP + LD
Sbjct: 133 GQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 58/252 (23%), Positives = 98/252 (38%), Gaps = 87/252 (34%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+++EN++ Y LK++ ++ K + L+G +G GK+T LR + + G I+
Sbjct: 2 IEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEG 61
Query: 158 KSNMKIAFLSQEF------EVSMSRTVREEF-------MSAF--------------KEEM 190
K+ F Q+ V + R V F MS + K+E+
Sbjct: 62 ----KVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKEL 117
Query: 191 EIAGKLERVQKALESAVDDMDLMGRLLDEF-DLLQRKAQAVNLDTLDAKVSKLMPELGFT 249
+ E V+++L+ A L DE D L A
Sbjct: 118 D-----EIVEESLKKAA--------LWDEVKDRLHDSAL--------------------- 143
Query: 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYL 302
S G Q R+ + + L +P++LLLDEPT+ LD + I+ L
Sbjct: 144 ---------GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL---- 190
Query: 303 GKQDVPMVIISH 314
K+ +VI++H
Sbjct: 191 -KKKYTIVIVTH 201
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 47/185 (25%), Positives = 73/185 (39%), Gaps = 42/185 (22%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLD 504
G+ A++G NG GKSTLLK++ G +P G +L+ F + AL
Sbjct: 25 FDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDG---QEMRF-ASTTAALAAG 80
Query: 505 KTV----LETVAE--AAEDWRIDDIKGLLGRCNFKADMLDR------------------- 539
+ L V E AE+ LG+ K +++R
Sbjct: 81 VAIIYQELHLVPEMTVAENL-------YLGQLPHKGGIVNRRLLNYEAREQLEHLGVDID 133
Query: 540 ---KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVI 594
+ LS G++ + K + + + ++ DEPT+ L E L I E + G VI
Sbjct: 134 PDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVI 193
Query: 595 T-VSH 598
VSH
Sbjct: 194 LYVSH 198
|
Length = 501 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 2e-06
Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 43/199 (21%)
Query: 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170
+L+D++ ++ G L+G NGAGK+T L+ +AG + G +
Sbjct: 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG-DLTGGG-------------APRGA 60
Query: 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA--------VDDMDLMGRLLDEFDL 222
V+ T+ E ++A A +L R++ L A ++ L+GR
Sbjct: 61 RVTGDVTLNGEPLAAID-----APRLARLRAVLPQAAQPAFAFSAREIVLLGRYPH---- 111
Query: 223 LQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ------ 276
R+A A+ + + + G TA G R V + S G R+ ++L Q
Sbjct: 112 -ARRAGALTHRDGEI-AWQALALAGATALVG-RDVTTLSGGELARVQFARVLAQLWPPHD 168
Query: 277 ---DPDLLLLDEPTNHLDL 292
P LLLDEPT LDL
Sbjct: 169 AAQPPRYLLLDEPTAALDL 187
|
Length = 272 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 49/212 (23%), Positives = 87/212 (41%), Gaps = 26/212 (12%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG---GE 480
++ +K + + + +L + GE + G NG GKSTL+K++ G+ P G GE
Sbjct: 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY-PHGTWDGE 59
Query: 481 VLLGEHNVLPNYFEQNQAE---------ALDLDKTVLETVAEAAE----DWRIDD----- 522
+ + + + L + +V E + E R+
Sbjct: 60 IYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL 119
Query: 523 -IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM 581
K LL AD + R V GG++ + K + K + LL+LDEP++ L E+
Sbjct: 120 RAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEI 179
Query: 582 LEEAISEYKG---TVITVSHDRYFVKQIVNRV 610
L + I + K + +SH VK + + +
Sbjct: 180 LLDIIRDLKAHGVACVYISHKLNEVKAVCDTI 211
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 2e-06
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 108 KGVTV---LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+G++V ++DV++EV+ GE VG+ G+ G G+T + G P SG +
Sbjct: 8 RGLSVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEIT 58
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 2e-06
Identities = 52/196 (26%), Positives = 83/196 (42%), Gaps = 48/196 (24%)
Query: 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQE 169
+++L V VK+GE + L+G +G+GK+T L I+AG ++ SG V + + Q
Sbjct: 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEV---------SLVGQP 73
Query: 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES--------AVDDMDLMGRLLDEFD 221
+ EE + + V +S A+++++L L E
Sbjct: 74 -------------LHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESS 120
Query: 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV---ASFSSGWQMRMSLGKILLQDP 278
Q + A L+ +LG G RL A S G Q R++L + P
Sbjct: 121 -RQSRNGAK----------ALLEQLGL----GKRLDHLPAQLSGGEQQRVALARAFNGRP 165
Query: 279 DLLLLDEPTNHLDLDT 294
D+L DEPT +LD T
Sbjct: 166 DVLFADEPTGNLDRQT 181
|
Length = 228 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 2e-06
Identities = 61/238 (25%), Positives = 100/238 (42%), Gaps = 65/238 (27%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG--------QEEPD 150
+++NI+K++ GV L +V+ +V+ GE V L G NGAGK+T +++++G E
Sbjct: 7 EMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIF 66
Query: 151 SGNVIKAKSNMK------IAFLSQEFEVSMSRTVREE-FMSAFKEEMEIAGKLERVQKAL 203
G ++A N++ IA + QE + +V E F+ E+ G
Sbjct: 67 EGEELQAS-NIRDTERAGIAIIHQELALVKELSVLENIFLG---NEITPGGI-------- 114
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
MD +D + +AQ KL+ +L + V + G
Sbjct: 115 ------MD--------YDAMYLRAQ------------KLLAQLKLDINPATP-VGNLGLG 147
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISH 314
Q + + K L + LL+LDEPT L LD I L+ + + ISH
Sbjct: 148 QQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLK----AHGIACIYISH 201
|
Length = 506 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 30/143 (20%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG---GEVLLGEHNVLPNYFEQNQAEA 500
+ ++ GE ++G G G STLLK + + G++ E+ E
Sbjct: 27 SGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEF-AEKYPGEI 85
Query: 501 L-----DLDK---TVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARL 552
+ D+ TV ET+ A RC + V +SGGE+ R+
Sbjct: 86 IYVSEEDVHFPTLTVRETLDFAL-------------RCKG-----NEFVRGISGGERKRV 127
Query: 553 AFCKFMVKPSTLLVLDEPTNHLD 575
+ + +V +++L D T LD
Sbjct: 128 SIAEALVSRASVLCWDNSTRGLD 150
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 3e-06
Identities = 47/193 (24%), Positives = 84/193 (43%), Gaps = 21/193 (10%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ +T KNL Y+ R + +LT+ GE ++GPNG GK+T +++G+ G ++
Sbjct: 2 ATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNII 61
Query: 483 LGEHNV--LP---------NYFEQNQA-----EALDLDKTVLETVAEAAEDWRIDDIKGL 526
+ + ++ LP Y Q + D VL+ + + + R D L
Sbjct: 62 IDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANEL 121
Query: 527 LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD----IPSKEML 582
+ + + D LSGGE+ R+ + + ++LDEP +D I K ++
Sbjct: 122 MEEFHI-EHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRII 180
Query: 583 EEAISEYKGTVIT 595
E G +IT
Sbjct: 181 EHLRDSGLGVLIT 193
|
Length = 241 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 3e-06
Identities = 48/175 (27%), Positives = 69/175 (39%), Gaps = 54/175 (30%)
Query: 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVI--------KAKSNMKIAFLSQEFEVSMSRTVR 179
L+G +G GKTT LR++AG E+PDSG+++ I + Q + + TV
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60
Query: 180 EEFMSAFKEEMEIAGKLE---RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236
E AF +M + E RV +AL V L+
Sbjct: 61 ENV--AFGLKMRKVPRAEIKPRVLEALRL------------------------VQLEEF- 93
Query: 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
DR S G Q R++L + L+ P +LLLDEP + LD
Sbjct: 94 ----------------ADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALD 132
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 49/212 (23%), Positives = 88/212 (41%), Gaps = 38/212 (17%)
Query: 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172
++DV++++ KGE +G+ G+ GA +T + + G E +G + +
Sbjct: 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKIN---------- 313
Query: 173 SMSRTVREEFMSAF---KEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRK--- 226
+ E F EE G + S + ++ ++ LL
Sbjct: 314 --NHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIR---NYKNKVGLLDNSRMK 368
Query: 227 --AQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
Q V +D++ K ++G S S G Q ++ +G+ LL P++L+LD
Sbjct: 369 SDTQWV-IDSMRVKTPGHRTQIG-----------SLSGGNQQKVIIGRWLLTQPEILMLD 416
Query: 285 EPTNHLDLDT---IEWLEGYLGKQDVPMVIIS 313
EPT +D+ I L L K+D ++IIS
Sbjct: 417 EPTRGIDVGAKFEIYQLIAELAKKDKGIIIIS 448
|
Length = 491 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 3e-06
Identities = 45/216 (20%), Positives = 89/216 (41%), Gaps = 42/216 (19%)
Query: 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170
VL+++ E+K G+ V +VG +GAGKTT LR+I G ++ + S +
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGK-----VEVP 451
Query: 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230
+ ++S + E+ F E + + L S D++ +L+
Sbjct: 452 KNTVSALIPGEYEPEFGEVT--------ILEHLRSKTGDLNAAVEILNR----------- 492
Query: 231 NLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHL 290
+ L + + + S+G + R L K+L + P++LL+DE HL
Sbjct: 493 ---------AGLSDAVLYRRKFSE-----LSTGQKERAKLAKLLAERPNVLLIDEFAAHL 538
Query: 291 DLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQL 322
D T + + + + +++++H + L
Sbjct: 539 DELTAVRVARKISELAREAGITLIVVTHRPEVGNAL 574
|
Length = 593 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 3e-06
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 33/210 (15%)
Query: 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL-EKPRG----GEVLL 483
NL G+ + + ++ ++ T+++GP G GK+T L+ + + +K G G+VLL
Sbjct: 26 NLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLL 85
Query: 484 GEHNVL------------------PNYFE----QNQAEALDLDKTVLETVAEAAEDWRID 521
G ++ PN F N + K V R+
Sbjct: 86 GGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLT 145
Query: 522 DIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM 581
++ G + D L LSGG++ L + + +L+LDEPT+ LD + E
Sbjct: 146 EV----GLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEK 201
Query: 582 LEEAISEY--KGTVITVSHDRYFVKQIVNR 609
+EE I + TVI V+H+ +I +R
Sbjct: 202 IEEFIRSLADRLTVIIVTHNLAQAARISDR 231
|
Length = 276 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 4e-06
Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 30/222 (13%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
K N++ Y L D+ ++++ + L+G +G GK+T LR +
Sbjct: 4 KTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFN-------------R 50
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
N KIA + E+ + V+ + + A ++ + + ++ ++S +++ +L
Sbjct: 51 MNDKIAKIDGLVEIE-GKDVKNQDVVALRKNVGMV--FQQPNVFVKSIYENISYAPKL-- 105
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL---VASFSSGWQMRMSLGKILL 275
N D +A V + ++G + D+L + S G Q R+ + + L
Sbjct: 106 -------HGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALA 158
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHD 315
P LLLLDEPT+ LD + +E L + ++ M++++H+
Sbjct: 159 IKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHN 200
|
Length = 246 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 4e-06
Identities = 57/228 (25%), Positives = 101/228 (44%), Gaps = 51/228 (22%)
Query: 76 EFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAG 135
+FEN K NK SN + K+ + ++ + T+L VT GE + ++G +G+G
Sbjct: 50 KFENMK--NKGSNI-KRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSG 106
Query: 136 KTTQLRIIAGQEEPDS--GNVIK-----AKSNMK-IAFLSQEFEVSMSRTVREEFMSAFK 187
K+T L +AG+ + ++ G ++ K +K F++Q+ + TVRE + F
Sbjct: 107 KSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLV--FC 164
Query: 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247
+ + L + +K A++V + ELG
Sbjct: 165 SLLRLPKSLTKQEKI----------------------LVAESV------------ISELG 190
Query: 248 FTADD----GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
T + G+ + S G + R+S+ +L +P LL+LDEPT+ LD
Sbjct: 191 LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 238
|
Length = 659 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 5e-06
Identities = 41/208 (19%), Positives = 91/208 (43%), Gaps = 35/208 (16%)
Query: 94 ISSGVKLENISKSYKGVTVL---------KDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144
I + +++ N+SK+++ T L K V++ +++G+ + ++G NG+GK+T +++A
Sbjct: 1 IETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLA 60
Query: 145 GQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204
G EP SG ++ ++ + F F R + ++ ++ + I L+
Sbjct: 61 GMIEPTSGEIL--INDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILD----FPL 114
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
D++ R F+ L+ +G D + + G
Sbjct: 115 RLNTDLEPEQRRKQIFETLRM--------------------VGLLPDHANYYPHMLAPGQ 154
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLDL 292
+ R++L + L+ P +++ DE LD+
Sbjct: 155 KQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 5e-06
Identities = 55/219 (25%), Positives = 99/219 (45%), Gaps = 28/219 (12%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
+L+ I K++ GV L V G + LVG NGAGK+T ++++ G D+G+
Sbjct: 6 QLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGS----- 60
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
I +L +E + ++ +E + +E+ + +L + + +GR
Sbjct: 61 ----ILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQL---------TIAENIFLGR--- 104
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
EF + ++ + A+ KL+ L D+LV S G Q + + K+L +
Sbjct: 105 EF---VNRFGRIDWKKMYAEADKLLARLNLRF-SSDKLVGELSIGEQQMVEIAKVLSFES 160
Query: 279 DLLLLDEPTNHL-DLDTIEWLE--GYLGKQDVPMVIISH 314
++++DEPT+ L D +T L Q +V ISH
Sbjct: 161 KVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISH 199
|
Length = 501 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 5e-06
Identities = 53/193 (27%), Positives = 81/193 (41%), Gaps = 49/193 (25%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLI--MG--LEKPR-GGEVLLGEHNVL--------- 489
+L I TA IGP+GCGKST L+ + M ++ R G++ L ++
Sbjct: 39 DLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVEL 98
Query: 490 ----------PNYFEQNQAEALDLDKTVLETVAE-------AAEDWRIDDI--KGL--LG 528
PN F K++ E VA A +D+I L G
Sbjct: 99 RARVGMVFQKPNPFP----------KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAG 148
Query: 529 RCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLDEPTNHLDIPSKEMLEEAIS 587
D L + LSGG++ RL + + V P +L +DEP + LD + +EE I
Sbjct: 149 LWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVIL-MDEPCSALDPIATAKVEELID 207
Query: 588 EYKG--TVITVSH 598
E + T++ V+H
Sbjct: 208 ELRQNYTIVIVTH 220
|
Length = 267 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 6e-06
Identities = 41/180 (22%), Positives = 70/180 (38%), Gaps = 63/180 (35%)
Query: 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172
L +++ VK G L+G +GAGKTT L ++AG++ +G + + I + +
Sbjct: 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKT--AGVI---TGEILIN--GRPLDK 75
Query: 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALE-SAVDDMDLMGRLLDEFDLLQRKAQAVN 231
+ R+ + + E+ ++ V++AL SA LL + QRK
Sbjct: 76 NFQRS------TGYVEQQDVHSPNLTVREALRFSA---------LLRGLSVEQRK----- 115
Query: 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
R+++G L P +L LDEPT+ LD
Sbjct: 116 -----------------------------------RLTIGVELAAKPSILFLDEPTSGLD 140
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 7e-06
Identities = 59/269 (21%), Positives = 107/269 (39%), Gaps = 80/269 (29%)
Query: 94 ISSGVKLENISKSY--------------------KGVTVLKDVTWEVKKGEKVGLVGVNG 133
++ V ++N++K Y K L D++ + +G+ +GLVG+NG
Sbjct: 1 MNVSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGING 60
Query: 134 AGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIA 193
+GK+T II G P G V + EVS+ + I+
Sbjct: 61 SGKSTLSNIIGGSLSPTVGKVDRNG------------EVSV---------------IAIS 93
Query: 194 GKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253
L +E+ M MG +RK ++ + P++ ++ G
Sbjct: 94 AGLSGQLTGIENIEFKMLCMG--------FKRK-----------EIKAMTPKIIEFSELG 134
Query: 254 DRL---VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLG 303
+ + V +SSG + ++ + +PD+L++DE + D LD I +
Sbjct: 135 EFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFK---- 190
Query: 304 KQDVPMVIISHDRAFLDQLCTKIVETEMG 332
+Q+ + +SH+ + Q CTKI E G
Sbjct: 191 EQNKTIFFVSHNLGQVRQFCTKIAWIEGG 219
|
Length = 264 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 8e-06
Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 12/111 (10%)
Query: 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREE 181
GE + +VG G+GKTT R +A + P G VI + + ++ + ++
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYI--DGEDILEEVLDQLLLIIVGGKK 58
Query: 182 FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232
+ + + +A L +K + +LDE L Q L
Sbjct: 59 ASGSGELRLRLA--LALARKLKPDVL--------ILDEITSLLDAEQEALL 99
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 9e-06
Identities = 74/321 (23%), Positives = 135/321 (42%), Gaps = 75/321 (23%)
Query: 98 VKLENISKSYK----GVTVLKDVTW----------------EVKKGEKVGLVGVNGAGKT 137
VK E+++K YK LKD+ + EV +GE VG++G+NG+GK+
Sbjct: 5 VKFEHVTKKYKMYNKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKS 64
Query: 138 TQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLE 197
T +IAG P+ G V S IA S + G+L
Sbjct: 65 TLSNLIAGVTMPNKGTVDIKGSAALIAISSG-----------------------LNGQL- 100
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG---D 254
+ +++++L G ++ L ++ K+ +++PE+ AD G
Sbjct: 101 -------TGIENIELKGLMMG----LTKE-----------KIKEIIPEIIEFADIGKFIY 138
Query: 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLD-TIEWLE--GYLGKQDVPMVI 311
+ V ++SSG + R+ + +PD+L++DE + D T + L+ +Q +
Sbjct: 139 QPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFF 198
Query: 312 ISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIE--SQYAAWEKQQREIEQT 369
ISH + + CTK + G + Y G+ + V +++ +Q + E++ EQ
Sbjct: 199 ISHSLSQVKSFCTKALWLHYGQVKEY-GDIKEVVDHYDEFLKKYNQMSVEERKDFREEQI 257
Query: 370 KDLINRLGAGANSGRASSAEK 390
+ L +GR +K
Sbjct: 258 SQFQHGLLQEDQTGRERKRKK 278
|
Length = 549 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 24/59 (40%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 98 VKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+K+EN+S SY LK+V++E+ +GE V ++G NG+GK+T +I+ G +P SG +
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
|
Length = 271 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 1e-05
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 425 VTIKNLEFGYEDRL---LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
+ KN+ F Y+ R ++ N T+ G+ A +G +GCGKST+LKLI L P G++
Sbjct: 383 IQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDI 442
Query: 482 LLGE-HNV 488
++ + HN+
Sbjct: 443 IINDSHNL 450
|
Length = 1466 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 1e-05
Identities = 58/236 (24%), Positives = 108/236 (45%), Gaps = 39/236 (16%)
Query: 392 LERLQE--EEQIEKPFQRKQMK--IRFPERGRSGRSVVTIKNLEFGYEDRL--LFNRANL 445
+ERL+E E + E P+Q ++ +P RGR V +N Y + L + N+
Sbjct: 1253 VERLKEYSETEKEAPWQIQETAPPSGWPPRGR-----VEFRNYCLRYREDLDLVLRHINV 1307
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL--------LGEHNVL-------- 489
TI GEK I+G G GKS+L + + + GE++ +G H++
Sbjct: 1308 TIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQ 1367
Query: 490 -PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSL----L 544
P F + LD + E W ++ L + D LD + + L
Sbjct: 1368 DPVLFSGSLRMNLDPFSQYSDE-----EVWWALELAHLKTFVSALPDKLDHECAEGGENL 1422
Query: 545 SGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI-SEYKG-TVITVSH 598
S G++ + + +++ + +LVLDE T +D+ + +++ I ++++ TV+T++H
Sbjct: 1423 SVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAH 1478
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-05
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 40/180 (22%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171
+L+DV+ V +G+ ++G G+GK+T L+ + Q E G V +S IA++ Q+
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERS---IAYVPQQAW 731
Query: 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231
+ M+ TVR + F EE D L A AV
Sbjct: 732 I-MNATVRGNIL-FFDEE----------------------------DAARL----ADAVR 757
Query: 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
+ L+A +++L G + G++ V + S G + R+SL + + + D+ LLD+P + LD
Sbjct: 758 VSQLEADLAQLGG--GLETEIGEKGV-NLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814
|
Length = 1560 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 51/230 (22%), Positives = 87/230 (37%), Gaps = 40/230 (17%)
Query: 419 RSGRSVVTIKNLEFGY----EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474
+++I+NL + + IE GE A++G +G GKS I+GL
Sbjct: 1 MMTMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL 60
Query: 475 KPRG-----GEVLLGEHNVLPNYFE---------------QNQAEALDLDKTVLETVAEA 514
G +L ++L E Q +L+ T+ + +AE
Sbjct: 61 PSPAAAHPSGSILFDGEDLL-AASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEV 119
Query: 515 --------AEDWRIDDIKGLLGRCNF--KADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564
R LL LD LSGG++ R+ + L
Sbjct: 120 LRLHRGLSRAAAR-ARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDL 178
Query: 565 LVLDEPTNHLDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRV 610
L+ DEPT LD+ + ++L+E +E ++ ++HD V++ +RV
Sbjct: 179 LIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRV 228
|
Length = 534 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-05
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 98 VKLENIS-KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
++LEN+S + G +LKD+++E+K G+++ + G +G GK++ R +AG SG +
Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60
Query: 157 AKSNMKIAFLSQ 168
+ FL Q
Sbjct: 61 P-EGEDLLFLPQ 71
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 58/273 (21%), Positives = 108/273 (39%), Gaps = 67/273 (24%)
Query: 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-- 154
+K+E ++ +Y G LK + +KKGE ++G NGAGK+T + + G +P SG +
Sbjct: 6 LKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILF 65
Query: 155 ------------IKAKSNMKIAFLS---QEFEVSMSRTVREEFMSAFKEEMEIAGKLERV 199
+K + ++ + F Q F S+ + V ++ E E+ +RV
Sbjct: 66 DGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVR---KRV 122
Query: 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259
AL+ + L D+
Sbjct: 123 DNALKR-------------------------------TGIEHLK----------DKPTHC 141
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHD 315
S G + R+++ +L+ +P +L+LDEPT LD + ++ L + + ++I +HD
Sbjct: 142 LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHD 201
Query: 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEK 348
+ C + + G +GN + EK
Sbjct: 202 IDIVPLYCDNVFVMKEGRV-ILQGNPKEVFAEK 233
|
Length = 283 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 50/207 (24%), Positives = 90/207 (43%), Gaps = 24/207 (11%)
Query: 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKAKSNMKIAFLSQEFEVS 173
DV++ +++GE +G+ G+ GAG+T ++ + G GNV + I +Q
Sbjct: 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAG 337
Query: 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD 233
++ V E+ ++ I L V K + +V L F R A L
Sbjct: 338 IA-MVPED-----RKRHGIVPILG-VGKNITLSV---------LKSFCFKMRIDAAAELQ 381
Query: 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLD 293
+ + + +L + S G Q + L K+LL +P +L+LDEPT +D+
Sbjct: 382 IIGSAIQRL----KVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVG 437
Query: 294 T---IEWLEGYLGKQDVPMVIISHDRA 317
I L L ++ V ++++S + A
Sbjct: 438 AKYEIYKLINQLAQEGVAIIVVSSELA 464
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 27/144 (18%)
Query: 479 GEVLLGEHNV-------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCN 531
G++LL ++ L N F E + + ++ E + ED +D+K C
Sbjct: 1277 GKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRA---CK 1333
Query: 532 FKA---------DMLDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 578
F A + D V LSGG+K R+A + +++ +L+LDE T+ LD S
Sbjct: 1334 FAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS 1393
Query: 579 KEMLEEAISEYKG----TVITVSH 598
++++E+ I + K T+IT++H
Sbjct: 1394 EKLIEKTIVDIKDKADKTIITIAH 1417
|
Length = 1466 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 2e-05
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++LEN+S SY G L+++ +KKGE +G++G NG+GK+T + G P G V+
Sbjct: 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60
|
Length = 274 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 48/232 (20%), Positives = 85/232 (36%), Gaps = 47/232 (20%)
Query: 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174
D+ +K+GE + LVG +G+GK+ I G P +++ +I +
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGL-----TQTSGEILLDGRPLLPLS 58
Query: 175 SR-----TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQA 229
R T+ + +AF + ++L L+ +A
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSK---------QARALILEALEA 109
Query: 230 VNLDTLDAKVSKLMP-ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTN 288
V L +V K P +L S G R+ + LL +P L+ DEPT
Sbjct: 110 VGLPD-PEEVLKKYPFQL--------------SGGMLQRVMIALALLLEPPFLIADEPTT 154
Query: 289 HLDLDT----IEWLEGYLGKQDVPMVIISHDRAFL----DQLCT----KIVE 328
LD+ ++ L +++I+HD + D++ +IVE
Sbjct: 155 DLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVE 206
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 427 IKNLEFGYEDRL-LFNRANL--------TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477
++NL + R F R + T+ G+ AIIG NG GKSTL K++ G+ +P
Sbjct: 7 VRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT 66
Query: 478 GGEVLLGEH 486
GE+L+ +H
Sbjct: 67 SGELLIDDH 75
|
Length = 267 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 55/227 (24%), Positives = 100/227 (44%), Gaps = 38/227 (16%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
V+ +++S +Y L D+++ + +G L+G NG+GK+T ++I G PD
Sbjct: 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNP-- 63
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
N KI T+ + + +E++ I + Q + DD+
Sbjct: 64 ----NSKITVDGI--------TLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDV----- 106
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
F L R AV + V ++ ++G D D A+ S G + R+++ IL
Sbjct: 107 ---AFGLENR---AVPRPEMIKIVRDVLADVGML-DYIDSEPANLSGGQKQRVAIAGILA 159
Query: 276 QDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHD 315
+P +++LDE T+ LD L I L+ K ++ ++ I+HD
Sbjct: 160 VEPKIIILDESTSMLDPAGKEQILKLIRKLK---KKNNLTVISITHD 203
|
Length = 282 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 3e-05
Identities = 48/224 (21%), Positives = 83/224 (37%), Gaps = 62/224 (27%)
Query: 128 LVGVNGAGKTTQLRIIA----GQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFM 183
+VG NGAGKTT + + G+ P+S K L +E EV V+ F
Sbjct: 27 IVGQNGAGKTTIIEALKYALTGELPPNS------KGGAHDPKLIREGEVRAQ--VKLAFE 78
Query: 184 SAFKEEMEIAGKLERVQKALESAV----DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239
+A ++ I L LE+ + + + L
Sbjct: 79 NANGKKYTITRSLA----ILENVIFCHQGESN---------WPLLD-----MRGRCSG-- 118
Query: 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEW-- 297
G++++AS +R++L + + +L LDEPT +LD + IE
Sbjct: 119 -------------GEKVLASLI----IRLALAETFGSNCGILALDEPTTNLDEENIEESL 161
Query: 298 ---LEGYLGKQDVPMVIISHDRAFLDQLCTKIVE---TEMGVSR 335
+E +++ +++I+HD +D I SR
Sbjct: 162 AEIIEERKSQKNFQLIVITHDEELVDAA-DHIYRVEKDGRQKSR 204
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 59/231 (25%), Positives = 98/231 (42%), Gaps = 41/231 (17%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477
R V+ ++NL + A + +++RGE AI+G +G GKS +M L +
Sbjct: 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA 69
Query: 478 GGEV-----LLGEHN-VLPNYFEQNQAE------------------ALDLDKTVLETVAE 513
GG V LL + + EQ+ A+ +L+ TV E +AE
Sbjct: 70 GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAE 129
Query: 514 -------AAEDWRIDDIKGLLG--RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564
A+ + + + K +L R +L R LSGG + R+ + +
Sbjct: 130 SIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAV 189
Query: 565 LVLDEPTNHLDIPSKEMLEEAIS----EYKGTVITVSHDRYFVKQIVNRVV 611
L+ DEPT LD+ + + + I E VI ++HD V +I +RV+
Sbjct: 190 LIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVL 240
|
Length = 623 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 3e-05
Identities = 54/242 (22%), Positives = 105/242 (43%), Gaps = 34/242 (14%)
Query: 384 RASSAEKKLERLQEEEQIE-KPFQRKQMKIRFPERGRSGRSVVTIKNLEFGY--EDRLLF 440
+AS + K+L E++E +R+ +K P G S +T+ N F + +
Sbjct: 602 QASVSLKRLRIFLSHEELEPDSIERRTIK---PGEGNS----ITVHNATFTWARDLPPTL 654
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMG-LEKPRGGEVLLGEHNVLPNYFEQNQAE 499
N +I G A++G GCGKS+LL ++ ++K G + G +P +Q +
Sbjct: 655 NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVP---QQAWIQ 711
Query: 500 ALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM----------LDRKVSLLSGGEK 549
L + +L +A + + +L C D+ + K LSGG+K
Sbjct: 712 NDSLRENIL--FGKALNEKY---YQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQK 766
Query: 550 ARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG-----TVITVSHDRYFVK 604
R++ + + + + + D+P + +D + + E + +G T I V+H ++
Sbjct: 767 QRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLP 826
Query: 605 QI 606
Q+
Sbjct: 827 QV 828
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 4e-05
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPM 309
DR S S G + R+++G+ LL P+LLL+DEP LDL + + +LE + ++P+
Sbjct: 123 DRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPI 182
Query: 310 VIISH 314
+ +SH
Sbjct: 183 LYVSH 187
|
Length = 352 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 4e-05
Identities = 57/247 (23%), Positives = 104/247 (42%), Gaps = 61/247 (24%)
Query: 92 SSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151
S + +K+ N+S Y +L+ V+ E+ + + ++G +G GK+T L+ + E +S
Sbjct: 2 SKLIPAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELES 61
Query: 152 GNVIKAKSNMKIAFLSQ---EFEVSMSRTVREEFMSAFKEEM-------------EIAG- 194
+ + ++ F +Q E V+++R R+ M K + +I G
Sbjct: 62 ----EVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGW 117
Query: 195 --KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252
KLE + +ESA+ D DL +D ++ K LD
Sbjct: 118 RPKLE-IDDIVESALKDADL-------WDEIKHKIHKSALD------------------- 150
Query: 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVP 308
S G Q R+ + + L P +LL+DEP LD + ++ + ++
Sbjct: 151 -------LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELT 203
Query: 309 MVIISHD 315
MVI+SH+
Sbjct: 204 MVIVSHN 210
|
Length = 261 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 4e-05
Identities = 59/247 (23%), Positives = 101/247 (40%), Gaps = 66/247 (26%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+++EN+S Y VLK+V+++VK GEK+G+VG GAG
Sbjct: 7 IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAG-------------------- 46
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK------LERVQKALESAVDD 209
KS + +A F+ A + ++EI G LE ++ +L D
Sbjct: 47 --KSTLILALFR--------------FLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQD 90
Query: 210 MDL-MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
L G + NLD D + + ++ G L S G + +
Sbjct: 91 PTLFSGTI------------RSNLDPFDEYSDEEIYGALRVSEGGLNL----SQGQRQLL 134
Query: 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHD-RAFLDQLCTK 325
L + LL+ P +L+LDE T +D T ++ + + + ++ I+H R +D K
Sbjct: 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID--YDK 192
Query: 326 IVETEMG 332
I+ + G
Sbjct: 193 ILVMDAG 199
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 5e-05
Identities = 53/253 (20%), Positives = 108/253 (42%), Gaps = 49/253 (19%)
Query: 94 ISSGVKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151
+ + ENI Y + VL ++ ++K GE +G+VG +G+GK+T +++ P
Sbjct: 452 LRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH 511
Query: 152 GNVIKAKSNMKI---AFLSQEFEVSM------SRTVREEFMSAFKEEMEIAGKLERVQKA 202
G V+ ++ I A+L ++ V + SR++R+ IA L
Sbjct: 512 GQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRD----------NIA--LCNPGAP 559
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262
E + L G +F + G+ + G++ S
Sbjct: 560 FEHVIHAAKLAGAH--DFISELPQ--------------------GYNTEVGEKGAN-LSG 596
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320
G + R+++ + L+ +P +L+ DE T+ LD ++ + + + + ++II+H + +
Sbjct: 597 GQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVR 656
Query: 321 QLCTKIVETEMGV 333
C +I+ E G
Sbjct: 657 A-CDRIIVLEKGQ 668
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 6e-05
Identities = 59/260 (22%), Positives = 106/260 (40%), Gaps = 69/260 (26%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
+ + + G+ + +V EV++ E V L+G NGAGKTT + G +P G +
Sbjct: 7 SVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRG 66
Query: 155 --IKAKSNMKIAFLS-----QEFEVSMSRTVREEFMSAFKEEME---IAGKL------ER 198
I+ +IA + Q + TV E + A ++++ +G L
Sbjct: 67 QHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRA 126
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
+AL+ A ++ +G L + R QA NL
Sbjct: 127 ESEALDRAATWLERVGLL----EHANR--QAGNL-------------------------- 154
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPT---NHLDLDTIEWLEGYLGKQ-DVPMVIISH 314
+ G Q R+ + + ++ P++L+LDEP N + ++ L L + +V +++I H
Sbjct: 155 --AYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEH 212
Query: 315 DRAFLDQLCTKIVETEMGVS 334
D K+V MG+S
Sbjct: 213 D--------MKLV---MGIS 221
|
Length = 255 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 6e-05
Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 29/200 (14%)
Query: 97 GVKLENISKSYKGVT-----VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151
G+ L+N+S +Y+ T L DV ++ G +G G+GK+T ++++ G P
Sbjct: 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61
Query: 152 GNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD 211
G+V I S+ ++ + +R++ F + Q E+ + D+
Sbjct: 62 GSVRVDD--TLITSTSKNKDI---KQIRKKVGLVF--------QFPESQLFEETVLKDVA 108
Query: 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271
+ F + Q +A+A+ + L +G + ++ S G R+++
Sbjct: 109 FGPQ---NFGVSQEEAEALAREKLAL--------VGISESLFEKNPFELSGGQMRRVAIA 157
Query: 272 KILLQDPDLLLLDEPTNHLD 291
IL +P +L+LDEPT LD
Sbjct: 158 GILAMEPKILVLDEPTAGLD 177
|
Length = 280 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 6e-05
Identities = 59/242 (24%), Positives = 99/242 (40%), Gaps = 67/242 (27%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRI------------IAG 145
+++ ++ S+ V VL V E+ L+G +G+GK+T LR+ ++G
Sbjct: 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSG 63
Query: 146 QEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL--------- 196
+ D ++ K M + L + ++ +S F E + + KL
Sbjct: 64 EVYLDGQDIFK----MDVIELRRRVQMVFQIPNPIPNLSIF-ENVALGLKLNRLVKSKKE 118
Query: 197 --ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254
ERV+ ALE A +L DE D LDA KL
Sbjct: 119 LQERVRWALEKA--------QLWDEVK-----------DRLDAPAGKL------------ 147
Query: 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL--GKQDVPMVII 312
S G Q R+ + + L P++LL DEPT +LD + +E K+D+ +V++
Sbjct: 148 ------SGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLV 201
Query: 313 SH 314
+H
Sbjct: 202 TH 203
|
Length = 250 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 7e-05
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLE---GYLGKQDVPMVIISHDR 316
S G + R+ L + L +P +L+LDEP +HLD++ L L ++I+H
Sbjct: 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP 156
Query: 317 AFLDQLCTKIVETEMGV 333
L +I+ E G
Sbjct: 157 ETL-ASADRILVLEDGR 172
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 7e-05
Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 38/191 (19%)
Query: 96 SGVKLENISKSYKGVTV-LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++L N+ +Y+ + + +K+GE V L+G NG+GK+T ++ G +P SG +
Sbjct: 321 KTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380
Query: 155 IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMG 214
+ + + +S A +LE +K + D L
Sbjct: 381 L----------------------LDGKPVS--------AEQLEDYRKLFSAVFSDYHL-- 408
Query: 215 RLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL 274
FD L + ++ + +L + +DG S+G + R++L L
Sbjct: 409 -----FDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLAL 463
Query: 275 LQDPDLLLLDE 285
L++ D+L+LDE
Sbjct: 464 LEERDILVLDE 474
|
Length = 546 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 7e-05
Identities = 19/61 (31%), Positives = 35/61 (57%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
+ Y +L+ +++ + G + L G NGAGKTT L++IAG P+ G ++ + ++
Sbjct: 6 ELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI 65
Query: 162 K 162
K
Sbjct: 66 K 66
|
Length = 200 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 8e-05
Identities = 21/47 (44%), Positives = 28/47 (59%)
Query: 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
F + L FS G + R++L +ILLQD ++LLDEPT LD T
Sbjct: 87 FDTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPIT 133
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 8e-05
Identities = 50/208 (24%), Positives = 91/208 (43%), Gaps = 56/208 (26%)
Query: 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
++ ++ SY G L ++ + + ++ ++G NGAGK+T R G +P SG+V+
Sbjct: 4 IETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLI 63
Query: 157 -----AKSNMK-------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIA-GKLERVQKAL 203
K N++ + F + + ++ S TV E +IA G +
Sbjct: 64 RGEPITKENIREVRKFVGLVFQNPDDQI-FSPTV----------EQDIAFGPIN------ 106
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
+G LDE +T+ +VS + LG + DR+ S G
Sbjct: 107 ---------LG--LDE-------------ETVAHRVSSALHMLGLE-ELRDRVPHHLSGG 141
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLD 291
+ R+++ ++ +P +L+LDEPT LD
Sbjct: 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLD 169
|
Length = 277 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 8e-05
Identities = 48/223 (21%), Positives = 92/223 (41%), Gaps = 28/223 (12%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+K+EN++ Y LK+V+ ++ K L+G +G GK+T +R + + I+
Sbjct: 13 IKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEG 72
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
K +++ + E + + + ++ S D++ R+
Sbjct: 73 KVSIE------------GEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRI- 119
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA---SFSSGWQMRMSLGKIL 274
N LD V + + DRL + S S G Q R+ + + L
Sbjct: 120 ----------HGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTL 169
Query: 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISHD 315
P ++L DEPT+ LD + +E + K+D +VI++H+
Sbjct: 170 AVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHN 212
|
Length = 258 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 9e-05
Identities = 53/191 (27%), Positives = 87/191 (45%), Gaps = 27/191 (14%)
Query: 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LP 490
L+ + I EK I+G G GKSTLL M + + GGE+ + + L
Sbjct: 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELR 1383
Query: 491 NYFEQNQAEALDLDKTVLETV-----AEAAEDWRIDDIKGLLGRCNFKADMLDRKV---- 541
F + + D TV + V A +AE W ++ GL R +++ +D +V
Sbjct: 1384 RQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGG 1443
Query: 542 SLLSGGEKARLAFCKFMVKP-STLLVLDEPTNHLD------IPSKEMLEEAISEYKGTVI 594
S S G++ + + ++K S +++DE T ++D I + M A S Y TVI
Sbjct: 1444 SNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVM--SAFSAY--TVI 1499
Query: 595 TVSHDRYFVKQ 605
T++H + V Q
Sbjct: 1500 TIAHRLHTVAQ 1510
|
Length = 1560 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 1e-04
Identities = 56/237 (23%), Positives = 90/237 (37%), Gaps = 53/237 (22%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV------ 154
E ++ Y TV +++T E+ G ++G NG GK+T LR ++ P G+V
Sbjct: 11 EQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEH 70
Query: 155 ----IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDM 210
+ +I L+Q TV+E + R +K E AV
Sbjct: 71 IQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPL---FTRWRKEDEEAV--- 124
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
+K M G T D+ V + S G + R +
Sbjct: 125 -----------------------------TKAMQATGIT-HLADQSVDTLSGGQRQRAWI 154
Query: 271 GKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323
+L Q+ ++LLDEPT LD +D +E L ++ + + HD L+Q C
Sbjct: 155 AMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHD---LNQAC 208
|
Length = 265 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 1e-04
Identities = 50/226 (22%), Positives = 106/226 (46%), Gaps = 38/226 (16%)
Query: 102 NISKSYKGV---TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVIKA 157
NIS+ Y + +LKD+T ++ G++G +G+GK+T L+++ E DS K
Sbjct: 12 NISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDS----KI 67
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIA--GKLERVQKALES-AVDDMDLMG 214
K + K+ + ++ + +R+E F++ + + L+S + + +
Sbjct: 68 KVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIK 127
Query: 215 RLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL---VASFSSGWQMRMSLG 271
++++E + ++G + DRL + S G Q R+++
Sbjct: 128 KIVEE----------------------CLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIA 165
Query: 272 KILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISHD 315
+ L P +LL+DEPT+ +D+ + +E + K ++ +VI+SH+
Sbjct: 166 RALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHN 211
|
Length = 257 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 40/152 (26%), Positives = 60/152 (39%), Gaps = 24/152 (15%)
Query: 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKP---RGGEVLLGEHNVLPNYFEQNQAEALDL 503
+ GE A++G +G GK+TL+ + G VLL + A
Sbjct: 48 AKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQD 107
Query: 504 DK-----TVLETVAEAAE---------DWRIDDIKGLLGRCNFK--ADML---DRKVSLL 544
D TV E + A + + + +L + A+ +V L
Sbjct: 108 DLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGL 167
Query: 545 SGGEKARLAF-CKFMVKPSTLLVLDEPTNHLD 575
SGGE+ RLAF + + P LL DEPT+ LD
Sbjct: 168 SGGERKRLAFASELLTDPP-LLFCDEPTSGLD 198
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 1e-04
Identities = 55/234 (23%), Positives = 98/234 (41%), Gaps = 54/234 (23%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
++++ Y +K+V +V++G L+G +G GKTT LR I + G A+
Sbjct: 8 QDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPG----ARVT 63
Query: 161 MKIAFLSQEF------EVSMSRTVREEF--------MSAFKEEMEIAGKLERVQKALESA 206
+I Q+ V+M R V F MS F ++
Sbjct: 64 GRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVF-----------------DNV 106
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL---VASFSSG 263
V + L G + D L++ +++ L +V DRL S G
Sbjct: 107 VAGLKLAG-IRDRDHLMEVAERSLRGAALWDEVK-------------DRLKTPATGLSGG 152
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISHD 315
Q R+ + + L +P++LL+DEPT+ LD + +E + K+ ++I++H+
Sbjct: 153 QQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHN 206
|
Length = 252 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 2e-04
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 262 SGWQM-RMSLGKILLQDPDLLLLDEPTNHLDLDT-IEWLEGYLG-KQDVPMVIISHDRAF 318
SG Q R+++ + LL+DP +L+LDE T+ LD +T LE + +++I+H +
Sbjct: 98 SGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLS- 156
Query: 319 LDQLCTKIVETEMG 332
+ +I+ + G
Sbjct: 157 TIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 98 VKLENISKSYKGVT-----VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
+K+EN++ Y T L +V E++ GE VGL+G G+GK+T ++ + G +P SG
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 153 NVI 155
+I
Sbjct: 63 KII 65
|
Length = 287 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 2e-04
Identities = 50/231 (21%), Positives = 93/231 (40%), Gaps = 43/231 (18%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSG 152
++++++S Y + D++ +++K L+G +G GK+T LR I + G
Sbjct: 22 LEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEG 81
Query: 153 NVIKAKSNM---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL--ERVQKALESAV 207
++ N+ I ++ E+ M F + + A K ER + L+ V
Sbjct: 82 EILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIV 141
Query: 208 DDMDLMGRLLDEF-DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
++ L DE D L A S S G Q
Sbjct: 142 EESLTKAALWDEVKDRLHSSA------------------------------LSLSGGQQQ 171
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISHD 315
R+ + + L P +LLLDEP + LD + +E + K++ ++I++H+
Sbjct: 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHN 222
|
Length = 268 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 54/226 (23%), Positives = 100/226 (44%), Gaps = 41/226 (18%)
Query: 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
+++E++ YK G LK ++ + +G K L+G NGAGK+T L + G P G
Sbjct: 5 IEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRG---- 60
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDL---- 212
++ + +E + VR + F++ + Q + DD+
Sbjct: 61 -----RVKVMGREVNAENEKWVRSKVGLVFQDPDD--------QVFSSTVWDDVAFGPVN 107
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
MG LD+ ++ +R +A L + D D+ S G + R+++
Sbjct: 108 MG--LDKDEVERRVEEA--LKAVRMW------------DFRDKPPYHLSYGQKKRVAIAG 151
Query: 273 ILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQDVPMVIISHD 315
+L DPD+++LDEP +LD +T+ + L Q +++ +HD
Sbjct: 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHD 197
|
Length = 274 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 52/222 (23%), Positives = 88/222 (39%), Gaps = 32/222 (14%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
+EN+ Y LK + + + L+G +G GK+T LR + + G I K
Sbjct: 6 IENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKL 65
Query: 160 NMKIAFLSQEFEVSMSR-TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
M + +V+ R V F M I E V L
Sbjct: 66 TMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSI---YENVAYGL--------------- 107
Query: 219 EFDLLQRKAQAV-NLDTLDAKVSKLMPELGFTADDGDRLVA---SFSSGWQMRMSLGKIL 274
+AQ + + LD V + + + DRL + S G Q R+ + + +
Sbjct: 108 -------RAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTI 160
Query: 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISH 314
+PD++L+DEPT+ LD +E + K++ +VI++H
Sbjct: 161 AMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTH 202
|
Length = 249 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 2e-04
Identities = 57/239 (23%), Positives = 102/239 (42%), Gaps = 43/239 (17%)
Query: 91 ASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-- 148
S ++ ++ Y G LK++ V + + L+G +G GK+T LR +
Sbjct: 10 VSPTQQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLY 69
Query: 149 PDS---GNVIKAKSNMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKA 202
P + G +I N+ I LS E EV M ++ + + F + +
Sbjct: 70 PGNHYEGEIILHPDNVNI--LSPEVDPIEVRMRISMVFQKPNPFPKSI------------ 115
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL---VAS 259
E+ + + G ++R++ L+ +V + + DRL +
Sbjct: 116 FENVAYGLRIRG--------VKRRS------ILEERVENALRNAALWDEVKDRLGDLAFN 161
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQDVPMVIISHD 315
S G Q R+ + + L DP++LL DEPT+ LD +IE L L K V ++I++H+
Sbjct: 162 LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDL-KNKVTILIVTHN 219
|
Length = 265 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 45/195 (23%), Positives = 74/195 (37%), Gaps = 58/195 (29%)
Query: 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG--------------QEEPDSGNVIKAKSN 160
+ + ++++GE L+G++G+GK+T LR + G D N A
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLR 101
Query: 161 M----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
+++ + Q+F + RTV E AF EM+ K ER ++ E
Sbjct: 102 RLRTHRVSMVFQQFALLPWRTVEENV--AFGLEMQGMPKAERRKRVDE------------ 147
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
+ + V L A DR S G Q R+ L +
Sbjct: 148 ---------QLELVGL-----------------AQWADRKPGELSGGMQQRVGLARAFAT 181
Query: 277 DPDLLLLDEPTNHLD 291
+ +LL+DEP + LD
Sbjct: 182 EAPILLMDEPFSALD 196
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG 145
+ L N SY +L +++W+V GE +VG NGAGK+T L +I G
Sbjct: 261 IVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308
|
Length = 490 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 13/95 (13%)
Query: 537 LDRKVSLLSGGEKARLAFCKFMVKPS---TLLVLDEPTNHL---DIPSKEMLEEAIS-EY 589
L R +S LSGGE RL ++ PS TL VLDEPT L DI K ++ S +
Sbjct: 803 LGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDI--KALIYVLQSLTH 860
Query: 590 KG-TVITVSHDRYFVKQIVNRVVEV--KGSNLQDY 621
+G TV+ + H+ + VK + + V+E+ +G NL Y
Sbjct: 861 QGHTVVIIEHNMHVVK-VADYVLELGPEGGNLGGY 894
|
Length = 1809 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 3e-04
Identities = 65/239 (27%), Positives = 104/239 (43%), Gaps = 72/239 (30%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
++L ++++S T L ++ EV+ GE + LVG NGAGK+T L +AG SG++
Sbjct: 4 MQLNDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGSGSIQFA 58
Query: 155 ---IKAKSNMKI----AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
++A S ++ A+LSQ+ + V +++ + + L V AL A+
Sbjct: 59 GQPLEAWSATELARHRAYLSQQQTPPFAMPVW-HYLTLHQPDKTRTELLNDVAGAL--AL 115
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG-WQM 266
DD +LG R S G WQ
Sbjct: 116 DD-----------------------------------KLG-------RSTNQLSGGEWQ- 132
Query: 267 RMSLGKILLQ-----DPD--LLLLDEPTNHLDL---DTIEWLEGYLGKQDVPMVIISHD 315
R+ L ++LQ +P LLLLDEP N LD+ ++ L L +Q + +V+ SHD
Sbjct: 133 RVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHD 191
|
Length = 248 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 52/203 (25%), Positives = 79/203 (38%), Gaps = 61/203 (30%)
Query: 106 SYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRI------------IAGQE--EPDS 151
S G T+ + + + G+++ LVG +GAGKT+ L I G E E D
Sbjct: 359 SPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELD- 417
Query: 152 GNVIKAKSNMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
++++ Q T+R+ + + + E++Q+ALE+A
Sbjct: 418 ----PESWRKHLSWVGQNPQLPHG----TLRDNVLLGNPDASD-----EQLQQALENA-- 462
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
+ EF LDT +G D L S G R+
Sbjct: 463 -------WVSEF----LPLLPQGLDT----------PIG---DQAAGL----SVGQAQRL 494
Query: 269 SLGKILLQDPDLLLLDEPTNHLD 291
+L + LLQ LLLLDEPT LD
Sbjct: 495 ALARALLQPCQLLLLDEPTASLD 517
|
Length = 588 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 3e-04
Identities = 55/224 (24%), Positives = 99/224 (44%), Gaps = 29/224 (12%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ +++ SY L ++ + ++ E L+G +G GK+T LR + + D N+
Sbjct: 5 ISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMND-DIENI--- 60
Query: 158 KSNMKIAFLSQEFEVSMSRTV--REEFMSAFKEEMEIAGKL-ERVQKALESA-VDDMDLM 213
K +I F Q S V R+E F++ + + V L+ A V D +L+
Sbjct: 61 KITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELI 120
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
+ ++E K + + E T D+ DR +FS G Q R+ + +
Sbjct: 121 DQRVEE----------------SLKQAAIWKE---TKDNLDRNAQAFSGGQQQRICIARA 161
Query: 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISHD 315
L P ++LLDEPT+ LD + +E L K ++++H+
Sbjct: 162 LAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHN 205
|
Length = 251 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 4e-04
Identities = 43/198 (21%), Positives = 82/198 (41%), Gaps = 31/198 (15%)
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYF--------- 493
+ ++ GE + G G G+S L+KL+ G + G+V L +
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIM 331
Query: 494 ---EQNQAEALDLDKTVLETVAEAA------------EDWRIDDIKGLLGRCNFKADMLD 538
E +AE + +V + + +A W ++ + N K +
Sbjct: 332 LCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSRE 391
Query: 539 RKVSLLSGG--EKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI---SEYKGTV 593
+ + LSGG +KA L +++ + +++LDEPT +D+ +K + I + V
Sbjct: 392 QLIMNLSGGNQQKAILG--RWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAV 449
Query: 594 ITVSHDRYFVKQIVNRVV 611
+ VS D V + +R+V
Sbjct: 450 LFVSSDLPEVLGVADRIV 467
|
Length = 501 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 4e-04
Identities = 53/187 (28%), Positives = 82/187 (43%), Gaps = 26/187 (13%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG---GEVLL-GEHNVLPNYFEQNQA- 498
+L + GE ++ G NG GKSTL+K++ G+ P G GE++ GE N + +A
Sbjct: 25 SLKVRAGEIVSLCGENGAGKSTLMKVLSGV-YPHGTYEGEIIFEGEELQASNIRDTERAG 83
Query: 499 -----EALDLDK--TVLETV---AEAAEDWRIDD------IKGLLGRCNFKADMLDRKVS 542
+ L L K +VLE + E +D + LL + + V
Sbjct: 84 IAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINP-ATPVG 142
Query: 543 LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHD 599
L G++ + K + K + LL+LDEPT L +L + I + K I +SH
Sbjct: 143 NLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHK 202
Query: 600 RYFVKQI 606
VK I
Sbjct: 203 LNEVKAI 209
|
Length = 506 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 50/196 (25%), Positives = 83/196 (42%), Gaps = 24/196 (12%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG--GEVLL 483
I + ++R + N GE A++GP+G GKSTLL + G + G +L
Sbjct: 70 KISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILA 129
Query: 484 GEHNVLPNYFEQ----NQAEALDLDKTVLETVAEAA-----------EDWRIDD--IKGL 526
++ Q + L TV ET+ + E + + I L
Sbjct: 130 NNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISEL 189
Query: 527 -LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585
L +C + + + +SGGE+ R++ M+ +LL+LDEPT+ LD + L
Sbjct: 190 GLTKCE-NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLT 248
Query: 586 ISE--YKG-TVITVSH 598
+ KG T++T H
Sbjct: 249 LGSLAQKGKTIVTSMH 264
|
Length = 659 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 4e-04
Identities = 44/202 (21%), Positives = 87/202 (43%), Gaps = 37/202 (18%)
Query: 414 FPERGRSGRSVVTIKNLEFGYEDRLLFNRANLT--IERGEKTAIIGPNGCGKSTLLKLIM 471
+PE G + ++NL Y L N++ ++ GEK I+G G GKSTL+ +
Sbjct: 1 WPEHGE-----IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALF 55
Query: 472 GLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA----AEDWRIDD--IKG 525
+ G++ + + +D+ LE + + +D + I+
Sbjct: 56 RFLEAEEGKIEI---------------DGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRS 100
Query: 526 LLGRCN-------FKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 578
L + + A + LS G++ L + ++K +LVLDE T +D +
Sbjct: 101 NLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYAT 160
Query: 579 KEMLEEAI-SEYKG-TVITVSH 598
++++ I E+ T++T++H
Sbjct: 161 DALIQKTIREEFTNSTILTIAH 182
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 46/221 (20%), Positives = 87/221 (39%), Gaps = 43/221 (19%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP----R 477
+ ++N+ + L + +LT++RG A++G +G GKS +G+
Sbjct: 2 PQQIELRNIAL-QAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT 60
Query: 478 GGEVLLGEHNVLPNYFE--------QNQAEALDLDKT----VLET------------VAE 513
G VLL V P QN A + T ET +
Sbjct: 61 AGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTA 120
Query: 514 AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNH 573
A E +++ +L F+ +SGG R+ ++ + ++ DEPT
Sbjct: 121 ALEAVGLENAARVLKLYPFE----------MSGGMLQRMMIALALLCEAPFIIADEPTTD 170
Query: 574 LDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRV 610
LD+ ++ ++LE + + ++ V+HD V ++ + V
Sbjct: 171 LDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDV 211
|
Length = 254 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 5e-04
Identities = 52/201 (25%), Positives = 87/201 (43%), Gaps = 34/201 (16%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFE--QN-- 496
+R + + GE ++G NG GK+T K++ G G+ + ++L N + QN
Sbjct: 1956 DRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMG 2015
Query: 497 ---QAEALDLDKTVLETV-------------AEAAEDWRIDDIKGLLGRCNFKADMLDRK 540
Q +A+D T E + E +W I + GL + DR
Sbjct: 2016 YCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSL-GL-------SLYADRL 2067
Query: 541 VSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA----ISEYKGTVITV 596
SGG K +L+ ++ L++LDEPT +D ++ ML I E + V+T
Sbjct: 2068 AGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLT- 2126
Query: 597 SHDRYFVKQIVNRV-VEVKGS 616
SH + + R+ + VKG+
Sbjct: 2127 SHSMEECEALCTRLAIMVKGA 2147
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 5e-04
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPM 309
D L +FS G Q R+ + + L+ P L+ +DEPT LD+ ++ L G + + + +
Sbjct: 146 DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAV 205
Query: 310 VIISHDRA 317
VI++HD A
Sbjct: 206 VIVTHDLA 213
|
Length = 258 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 52/167 (31%), Positives = 73/167 (43%), Gaps = 42/167 (25%)
Query: 423 SVVTIKNLEF----GYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
SV+T KNL + R L N + ++ G TA++G +G GK+TLL ++ G K G
Sbjct: 2 SVLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAG-RKTAG 60
Query: 479 ---GEVLLGEHNVLPN------YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGR 529
GE+L+ + N Y EQ D+ L TV EA
Sbjct: 61 VITGEILINGRPLDKNFQRSTGYVEQQ-----DVHSPNL-TVREALR------------- 101
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNHLD 575
F A + LS ++ RL + KPS +L LDEPT+ LD
Sbjct: 102 --FSALLRG-----LSVEQRKRLTIGVELAAKPS-ILFLDEPTSGLD 140
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 6e-04
Identities = 53/224 (23%), Positives = 89/224 (39%), Gaps = 34/224 (15%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
N++ + G TVL V+ L+G G+GKTT LR + + SG
Sbjct: 26 NLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSG--------- 76
Query: 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEI---AGKLERVQKALESAVDDMDLMGRLLD 218
+ S + + +++ +E G L + ++ D L G
Sbjct: 77 --------YRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAG---- 124
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS---FSSGWQMRMSLGKILL 275
R + V + E+G DRL S S G Q + L + L
Sbjct: 125 -----VRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLA 179
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRA 317
+P++LLLDEPT+ LD T E +E ++ + ++I++H+ A
Sbjct: 180 VNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLA 223
|
Length = 276 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 7e-04
Identities = 55/219 (25%), Positives = 98/219 (44%), Gaps = 49/219 (22%)
Query: 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQ 168
G VL+D+++ V+ G++VGL+G G+GK+T L + + LS
Sbjct: 1231 GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSAL-------------------LRLLST 1271
Query: 169 EFEVSMS---------RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
E E+ + +T R+ F ++ +G + ++D + DE
Sbjct: 1272 EGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRK----------NLDPYEQWSDE 1321
Query: 220 FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD 279
+ + A+ V L ++ + + +L F DG ++ S+G + M L + +L
Sbjct: 1322 --EIWKVAEEVGLKSV---IEQFPDKLDFVLVDGGYVL---SNGHKQLMCLARSILSKAK 1373
Query: 280 LLLLDEPTNHLDLDTIEWLEGYLGKQDVP--MVIISHDR 316
+LLLDEP+ HLD T++ + L KQ VI+S R
Sbjct: 1374 ILLLDEPSAHLDPVTLQIIRKTL-KQSFSNCTVILSEHR 1411
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 7e-04
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 12/90 (13%)
Query: 539 RKVSLLSGGEKA------RLAFCKFMV--KPSTLLVLDEPTNHLDIPSKEMLEEAISEYK 590
R + LSGGE+ RLA + LL LDEP LD E L E + E
Sbjct: 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELL 870
Query: 591 ---GTVITVSHDRYFVKQIVNRVVEVKGSN 617
+I +SH ++ + + VK
Sbjct: 871 SDGRQIIIISHVEELKERA-DVRIRVKKDG 899
|
Length = 908 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 8e-04
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 272 KILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISH 314
+ L ++ LL+LDEPT L +E L L Q V ++ ISH
Sbjct: 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISH 140
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 8e-04
Identities = 61/247 (24%), Positives = 107/247 (43%), Gaps = 65/247 (26%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD----SGNV 154
+++N+ S +LK + + KGE ++G NG+GK+T ++IAG P G++
Sbjct: 9 EIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH--PAYKILEGDI 66
Query: 155 IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMG 214
+ ++ L E E R F+ AF+ +EI G V + D +
Sbjct: 67 LFKGESI----LDLEPE---ERAHLGIFL-AFQYPIEIPG------------VSNADFL- 105
Query: 215 RL----------LDEFD------LLQRKAQAVNLDT--LDAKVSKLMPELGFTADDGDRL 256
RL L E D ++ K + V +D L V ++G
Sbjct: 106 RLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNV-----------NEG--- 151
Query: 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWL-EGY--LGKQDVPMVIIS 313
FS G + R + ++ L D +L +LDE + LD+D ++ + EG L + +++I+
Sbjct: 152 ---FSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILIT 208
Query: 314 HDRAFLD 320
H + LD
Sbjct: 209 HYQRLLD 215
|
Length = 252 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.001
Identities = 49/224 (21%), Positives = 92/224 (41%), Gaps = 42/224 (18%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
L+N+ +L ++++ ++ GE + G +G GK+T L+I+A P SG ++
Sbjct: 10 LQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGE 69
Query: 160 NMKIAFLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
+ I+ L E +VS F + + ++ Q D +
Sbjct: 70 D--ISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQP-------DPAIFLDD 120
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
L+ F L L +++L S G + R+SL + L
Sbjct: 121 LERFALPD--------TILTKNIAEL------------------SGGEKQRISLIRNLQF 154
Query: 277 DPDLLLLDEPTNHLDLDTI----EWLEGYLGKQDVPMVIISHDR 316
P +LLLDE T+ LD E + Y+ +Q++ ++ ++HD+
Sbjct: 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDK 198
|
Length = 225 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.001
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
S G Q R++ ++LL P + LDE T+ LD ++
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEES 126
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 98 VKLENISKSY------KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151
+K +N+S Y L DV EVKKGE + ++G NG+GK+T + + P
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 152 GNVI 155
G V
Sbjct: 65 GKVY 68
|
Length = 280 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 44/188 (23%), Positives = 87/188 (46%), Gaps = 33/188 (17%)
Query: 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQE 169
V L V++ +++G+ + +VG +G GK+T R++ E P G + ++ A E
Sbjct: 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA--DPE 85
Query: 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQA 229
+ + + ++ F + + G L +K +G++L+E
Sbjct: 86 AQKLLRQKIQIVFQNPY-------GSLNPRKK-----------VGQILEE-------PLL 120
Query: 230 VNLDTLDA-----KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
+N L A K +M ++G + DR FS G + R+++ + L+ DPD+++ D
Sbjct: 121 INTS-LSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVAD 179
Query: 285 EPTNHLDL 292
EP + LD+
Sbjct: 180 EPVSALDV 187
|
Length = 327 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.001
Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 25/169 (14%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
+ +++ + Y + +L I +GE +IG NG GK+TLL + G + G +
Sbjct: 3 KVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI 62
Query: 482 LLGEHNVLPNYFEQNQAEALDL---------DKTVLETVA-------EAAEDWRIDDIKG 525
+ ++ + EA+ + TV E +A RI +
Sbjct: 63 VFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYE 122
Query: 526 LLGRCNFKADMLDRKVS---LLSGGEKARLAFCKFMVKPSTLLVLDEPT 571
L R + +R++ +SGGE+ LA + ++ LL+LDEP+
Sbjct: 123 LFPR------LHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPS 165
|
Length = 237 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.001
Identities = 53/221 (23%), Positives = 90/221 (40%), Gaps = 58/221 (26%)
Query: 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--------------IKAK 158
+KD + +++GE ++G++G+GK+T +R++ EP G V ++
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
KIA + Q F + TV + +AF E+ ER +KAL++
Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDN--TAFGMELAGINAEERREKALDA------------- 148
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
+ V L+ + D L S G + R+ L + L +P
Sbjct: 149 --------LRQVGLEN-------------YAHSYPDEL----SGGMRQRVGLARALAINP 183
Query: 279 DLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHD 315
D+LL+DE + LD + + L K +V ISHD
Sbjct: 184 DILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHD 224
|
Length = 400 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.001
Identities = 58/238 (24%), Positives = 108/238 (45%), Gaps = 43/238 (18%)
Query: 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQ 168
G VL+++++ + G++VGL+G G+GK+T L ++ + +++I
Sbjct: 16 GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFL--------RLLNTEGDIQID---- 63
Query: 169 EFEVSMSRTVREEFMSAF----KEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQ 224
VS + +++ AF ++ +G + ++D G+ DE +
Sbjct: 64 --GVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRK----------NLDPYGKWSDE--EIW 109
Query: 225 RKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
+ A+ V L ++ + + +L F DG ++ S G + M L + +L +LLLD
Sbjct: 110 KVAEEVGLKSV---IEQFPGQLDFVLVDGGCVL---SHGHKQLMCLARSVLSKAKILLLD 163
Query: 285 EPTNHLDLDTIEWLEGYLGKQDVP--MVIISHDR--AFLDQLCTKIVETEMGVSRTYE 338
EP+ HLD T + + L KQ VI+S R A L+ C + + E R Y+
Sbjct: 164 EPSAHLDPITYQVIRKTL-KQAFADCTVILSEHRIEAMLE--CQRFLVIEENKVRQYD 218
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.002
Identities = 48/209 (22%), Positives = 79/209 (37%), Gaps = 32/209 (15%)
Query: 409 QMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNR-ANLTIERGEKTAIIGPNGCGKSTLL 467
+++ P G V+ +++L + + + + GE I G G G+S L+
Sbjct: 243 VLRVVKPPS-TPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELV 301
Query: 468 KLIMGLEKPRGGEVLLGEHNVLPNYF-------------EQNQAEALDLDKTVLETVAEA 514
+ I GL KP G +LL +VL E L LD ++ E +
Sbjct: 302 EAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLG 361
Query: 515 AED------WRIDDIKGLLGRCN-------FKADMLDRKVSLLSGG--EKARLAFCKFMV 559
D D + + +A D LSGG +K LA +
Sbjct: 362 RHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILAR-ELAR 420
Query: 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISE 588
+P LL+ +PT LD+ + E + E + E
Sbjct: 421 RPD-LLIAAQPTRGLDVGAIEFIHERLLE 448
|
Length = 501 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 7/68 (10%)
Query: 254 DRLVAS---FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-LDT--IEWLEGYLGKQDV 307
DRL S S G Q R+ + + L +P++LL+DEPT+ LD + T IE L L K+D
Sbjct: 138 DRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQEL-KKDY 196
Query: 308 PMVIISHD 315
+VI++H+
Sbjct: 197 TIVIVTHN 204
|
Length = 250 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.002
Identities = 44/221 (19%), Positives = 98/221 (44%), Gaps = 23/221 (10%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+++EN++ + +LK+V ++ K L+G +G GK+T +R +
Sbjct: 4 IEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLN------------- 50
Query: 158 KSNMKIAFLSQEFEVSMS-RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
+ N I E + + + + + + ++ ++ +S D++ R+
Sbjct: 51 RMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRI 110
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
E D + + ++L K + L E+ D D+ S G Q R+ + + +
Sbjct: 111 HGEDD--EDFIEERVEESL--KAAALWDEV---KDKLDKSALGLSGGQQQRLCIARTIAV 163
Query: 277 DPDLLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISHD 315
P+++L+DEP + LD + +E + K+D +VI++H+
Sbjct: 164 SPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHN 204
|
Length = 250 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 51/213 (23%), Positives = 98/213 (46%), Gaps = 47/213 (22%)
Query: 96 SGVKLENIS-KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+G+K ENI + G +++ +++EV G + + G NG GK++ RI+ P G
Sbjct: 450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGEL-WPVYGGR 508
Query: 155 IKAKSNMKIAFLSQEFEVSMSRTVREEF---MSAFKEEMEIAGKLERVQKALESAVDDMD 211
+ + K+ ++ Q +++ T+R++ S E+M+ G + K LE +D++
Sbjct: 509 LTKPAKGKLFYVPQRPYMTL-GTLRDQIIYPDS--SEDMKRRGLSD---KDLEQILDNVQ 562
Query: 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMS 269
L +L+R E G++A D D L S G + R++
Sbjct: 563 LT-------HILER-------------------EGGWSAVQDWMDVL----SGGEKQRIA 592
Query: 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL 302
+ ++ P +LDE T+ + +D +EGY+
Sbjct: 593 MARLFYHKPQFAILDECTSAVSVD----VEGYM 621
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 45/191 (23%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE-----EPD---SGNVIKAKSNMKI 163
+L++VT + G L+GV+GAGKTT + ++AG++ E D SG K ++ +I
Sbjct: 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 954
Query: 164 AFLSQEFEV-SMSRTVREEFM-SAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
+ ++ ++ S TVRE + SAF + K E++ +DE
Sbjct: 955 SGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKM---------------MFVDEV- 998
Query: 222 LLQRKAQAVNLDTL-DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280
+ V LD L DA V G V S+ + R+++ L+ +P +
Sbjct: 999 -----MELVELDNLKDAIV-------------GLPGVTGLSTEQRKRLTIAVELVANPSI 1040
Query: 281 LLLDEPTNHLD 291
+ +DEPT+ LD
Sbjct: 1041 IFMDEPTSGLD 1051
|
Length = 1470 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 40.1 bits (93), Expect = 0.002
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 517 DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF---CKFMVKPSTLLVLDEPTNH 573
+ ++ D+ L + +L + +S G K LA + +LL++DEP N
Sbjct: 163 ELKLLDLVKRLFLESDLLRLLKLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENG 222
Query: 574 LDIPS--KEMLE--EAISEYKGTVITVSHDRYFVK 604
L P ++++E + +SE +I +H +
Sbjct: 223 LH-PKLLRKLVELLKELSEKGAQLIFTTHSPLLLD 256
|
Length = 256 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 47/235 (20%), Positives = 100/235 (42%), Gaps = 51/235 (21%)
Query: 76 EFENKKYSNKQSNTGASSISSGVKLENI-SKSYKGVTVLKDVTWEVKKGEKVGLVGVNGA 134
E +N+ ++ + N + + ++ N+ S+ K V +D+++ V +GE +G G+ G+
Sbjct: 245 ELQNR-FNAMKENVSNLAHETVFEVRNVTSRDRKKV---RDISFSVCRGEILGFAGLVGS 300
Query: 135 GKTTQLRIIAGQEEPDSGNV------IKAKSNMK-----IAFLSQEFEVSMSRTVREE-F 182
G+T + + G ++ G + I +S + +A++++ SR R+ F
Sbjct: 301 GRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITE------SR--RDNGF 352
Query: 183 MSAF--KEEMEIAGKLERVQ-KALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239
F + M I+ L+ K ++D ++ +LL K +VN +
Sbjct: 353 FPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQN------ 406
Query: 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
+ S G Q ++ + K L P++++ DEPT +D+
Sbjct: 407 -----------------ITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGA 444
|
Length = 510 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.003
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 234 TLDAKVSKLMPELGFTADDGDRLVAS---FSSGWQMRMSLGKILLQDPDLLLLDEPTNHL 290
LD V K + + DRL S S G Q R+ + ++L P ++LLDEPT+ L
Sbjct: 120 VLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSAL 179
Query: 291 DLDTIEWLEG--YLGKQDVPMVIISH 314
D + +E K D M++++
Sbjct: 180 DPISAGKIEETLLGLKDDYTMLLVTR 205
|
Length = 252 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 57/227 (25%), Positives = 97/227 (42%), Gaps = 46/227 (20%)
Query: 426 TIKNLEFGY----EDRLLFNRANLTIERGEKTAIIGPNGCGKS-TLLKLIMGLEKP---- 476
I+NL + R + N +L IE GE A++G +G GKS T L ++ L P
Sbjct: 7 AIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVY 66
Query: 477 RGGEVLLGEHNVLPNYFEQ-------NQAEAL------------DLDKTVLETVA----- 512
G++ ++L + EQ N+ + L+K + E ++
Sbjct: 67 PSGDIRFHGESLL-HASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGM 125
Query: 513 --EAAEDWRIDDIKGLLGRCNFK--ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568
EAA +I L R + A L LSGGE+ R+ ++ LL+ D
Sbjct: 126 RREAARG----EILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIAD 181
Query: 569 EPTNHLDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVV 611
EPT LD+ + ++L E E ++ ++H+ V+++ +RV
Sbjct: 182 EPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVA 228
|
Length = 529 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.003
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 254 DRLVA---SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-LDTIEWLEGYLG-KQDVP 308
DRL S S G Q R+ + + L +PD+LL+DEPT+ LD + T + E L K+
Sbjct: 147 DRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYT 206
Query: 309 MVIISHD 315
+VI++H+
Sbjct: 207 IVIVTHN 213
|
Length = 259 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 46/190 (24%), Positives = 76/190 (40%), Gaps = 43/190 (22%)
Query: 100 LENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
L N++ +Y + + +K+GE + L+G NG+GK+T ++ G +P SG +
Sbjct: 325 LRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEI---- 380
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV-DDMDLMGRLL 217
L + V+ + E++ F SAV D L +LL
Sbjct: 381 ------LLDGK-PVTAEQ--PEDYRKLF------------------SAVFTDFHLFDQLL 413
Query: 218 DEFDLLQRKAQAVN--LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
+ V L+ L KL +DG S G + R++L L
Sbjct: 414 GP-EGKPANPALVEKWLERLKMA-HKL------ELEDGRISNLKLSKGQKKRLALLLALA 465
Query: 276 QDPDLLLLDE 285
++ D+LLLDE
Sbjct: 466 EERDILLLDE 475
|
Length = 547 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 0.003
Identities = 45/218 (20%), Positives = 81/218 (37%), Gaps = 38/218 (17%)
Query: 83 SNKQSNTGASSISSGV-KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLR 141
S QS++ + V ++E + Y G L DV ++ + + +G +G GK+T LR
Sbjct: 5 SRSQSDSATINPDHSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLR 64
Query: 142 IIAGQEEPDSGNVIKAKSNM--------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIA 193
+ G ++ + +I + +V M F + E + A
Sbjct: 65 CFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFA 124
Query: 194 GKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253
+ + L+ V+D + +E D L K + L
Sbjct: 125 PRANGYKGNLDELVEDSLRRAAIWEEVK-----------DKLKEKGTAL----------- 162
Query: 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
S G Q R+ + + + PD+LL+DEP + LD
Sbjct: 163 -------SGGQQQRLCIARAIAMKPDVLLMDEPCSALD 193
|
Length = 274 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.003
Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 31/206 (15%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-KIAFLSQEF 170
VL+ + + GEKVG+VG GAGK++ + E G +I N+ KI F
Sbjct: 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRF 1360
Query: 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230
++++ ++ + +G L ++D + DE A+
Sbjct: 1361 KITIIP----------QDPVLFSGSLRM----------NLDPFSQYSDE-----EVWWAL 1395
Query: 231 NLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHL 290
L L VS L +L +G + S G + + L + LL+ +L+LDE T +
Sbjct: 1396 ELAHLKTFVSALPDKLDHECAEGGE---NLSVGQRQLVCLARALLRKTKILVLDEATAAV 1452
Query: 291 DLDTIEWLEGYLGKQ--DVPMVIISH 314
DL+T ++ + Q D ++ I+H
Sbjct: 1453 DLETDNLIQSTIRTQFEDCTVLTIAH 1478
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 538 DRKVSLLSGGEKA------RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK- 590
+R ++ LSGGE+ RLA ++ LL+LDEPT LD + L + + Y
Sbjct: 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR 842
Query: 591 --GTVITVSHD 599
VI VSHD
Sbjct: 843 KIPQVIIVSHD 853
|
Length = 880 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 57/215 (26%), Positives = 95/215 (44%), Gaps = 54/215 (25%)
Query: 95 SSG-VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151
SSG +K E++ Y+ VL +++E+ EKVG+VG GAGK++ L + E +
Sbjct: 1234 SSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER 1293
Query: 152 GNVIKAKSNM---------KIAFLSQEFEVSMSRTVREEF-MSAFKE--EMEIAGKLERV 199
G ++ ++ K+ + + V S TVR F + F E + ++ LER
Sbjct: 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVR--FNLDPFNEHNDADLWESLERA 1351
Query: 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259
D+++R + LDA+VS E G +
Sbjct: 1352 HLK------------------DVIRRNSLG-----LDAEVS----EAG----------EN 1374
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
FS G + +SL + LL+ +L+LDE T +D+ T
Sbjct: 1375 FSVGQRQLLSLARALLRRSKILVLDEATAAVDVRT 1409
|
Length = 1622 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.004
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 254 DRL---VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-LDT--IEWLEGYLGKQDV 307
DRL S G Q R+ + + L P++LL+DEPT+ LD + T IE L L K+
Sbjct: 141 DRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITEL-KKKY 199
Query: 308 PMVIISH 314
+VI++H
Sbjct: 200 TIVIVTH 206
|
Length = 253 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.004
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
SK ++ D + + + G +G+GKTT +R+IAG PD G +
Sbjct: 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEI 54
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.004
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
S G + R+S+ L+ +P LL LDEPT+ LD
Sbjct: 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLD 143
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.004
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 254 DRLVAS---FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQDV 307
DRL + S G Q R+ + + + +P++LLLDEPT+ LD IE L L K
Sbjct: 160 DRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITEL-KSKY 218
Query: 308 PMVIISH 314
+VI++H
Sbjct: 219 TIVIVTH 225
|
Length = 272 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 0.004
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL--GKQDVPMVIISHD 315
S S G Q R+ + ++L PD++LLDEPT+ LD + +E L + +++++H
Sbjct: 148 SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHS 206
|
Length = 252 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.004
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 17/105 (16%)
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLM-----PELGFTADDGDRLVASFSSGWQMRMSLG 271
LD F R A L T+ + +L PEL +A S G Q + L
Sbjct: 367 LDRFTGGSRIDDAAELKTILESIQRLKVKTASPELA---------IARLSGGNQQKAVLA 417
Query: 272 KILLQDPDLLLLDEPTNHLDLDT---IEWLEGYLGKQDVPMVIIS 313
K LL +P +L+LDEPT +D+ I L L +Q V +++IS
Sbjct: 418 KCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVIS 462
|
Length = 506 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 17/154 (11%)
Query: 432 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN 491
F E ++L ++++ RG+ T ++G G GKSTLL+ ++ + G V E ++
Sbjct: 668 FELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV-WAERSIA-- 724
Query: 492 YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM----------LDRKV 541
Y Q +A ++ TV + E+ + + +AD+ + K
Sbjct: 725 YVPQ---QAWIMNATVRGNILFFDEE-DAARLADAVRVSQLEADLAQLGGGLETEIGEKG 780
Query: 542 SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575
LSGG+KAR++ + + + +LD+P + LD
Sbjct: 781 VNLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814
|
Length = 1560 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.004
Identities = 61/250 (24%), Positives = 98/250 (39%), Gaps = 55/250 (22%)
Query: 415 PERGRSGRSVVTIKNL--EFGYEDRLL--FNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
P + +++ +K+L F D + N N ++ GE I+G +G GKS +
Sbjct: 3 PLAQQQADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFAL 62
Query: 471 MGLEKPRG---GEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAED--------WR 519
MGL G G +L N E +L+K E ++ +D R
Sbjct: 63 MGLLAANGRIGGSATFNGREIL------NLPEK-ELNKLRAEQISMIFQDPMTSLNPYMR 115
Query: 520 IDDI--------KGLLGRCNFKAD--MLD-------RKVSLL-----SGGEKARLAFCKF 557
+ + KG+ F+ MLD RK + SGG + R+
Sbjct: 116 VGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMA 175
Query: 558 MVKPSTLLVLDEPTNHLDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEV 613
++ LL+ DEPT LD+ + +L E E+ +I ++HD V I ++V
Sbjct: 176 LLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKV--- 232
Query: 614 KGSNLQDYAG 623
L YAG
Sbjct: 233 ----LVMYAG 238
|
Length = 330 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 645 | |||
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-98 Score=823.24 Aligned_cols=522 Identities=42% Similarity=0.696 Sum_probs=455.1
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCCC
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~ 175 (645)
.+|+++|++++|+++++|+++||+|.+|+++||||+||||||||||+|+|.+.|++|+|... ...+|+|++|++.....
T Consensus 2 ~~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~-~~~~v~~l~Q~~~~~~~ 80 (530)
T COG0488 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRP-KGLRVGYLSQEPPLDPE 80 (530)
T ss_pred ceEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeec-CCceEEEeCCCCCcCCC
Confidence 36999999999999999999999999999999999999999999999999999999999987 35689999999998888
Q ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccc
Q 006442 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (645)
Q Consensus 176 ~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~ 255 (645)
.||.+.+..++.+.......++.+...+... ....+..+......++.|.++.++..+|..+|++.. ++
T Consensus 81 ~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~--~~ 149 (530)
T COG0488 81 KTVLDYVIEGFGELRELLAELEEAYALLADP---------DDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DR 149 (530)
T ss_pred ccHHHHHHhhhHHHHHHHHHHHHHHHhcccc---------hhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc--cC
Confidence 8999999877766544444444333322111 112233344455566779999999999999999754 89
Q ss_pred cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcCceeE
Q 006442 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335 (645)
Q Consensus 256 ~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~i~~l~~G~~~ 335 (645)
++.+||||||.||+||+||+.+||+|||||||||||.+++.||.++|+++..|||+||||++|++.+|++|+.++.|++.
T Consensus 150 ~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~ 229 (530)
T COG0488 150 PVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLT 229 (530)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCcee
Confidence 99999999999999999999999999999999999999999999999877669999999999999999999999999999
Q ss_pred EeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCch-hhHHHHHHHHHHHHHhhhhccccc-ccceEEe
Q 006442 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANS-GRASSAEKKLERLQEEEQIEKPFQ-RKQMKIR 413 (645)
Q Consensus 336 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~l~rl~~~~~~~~~~~-~~~~~~~ 413 (645)
.|.|||+.|+.++........+++.++++++++...++++....+++ .++.++.+.++++++.....++.. .+...+.
T Consensus 230 ~y~Gny~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~ 309 (530)
T COG0488 230 PYKGNYSSYLEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFR 309 (530)
T ss_pred EecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhcccccccccceee
Confidence 99999999999999988888899999999999999999987664433 467778888888875422333332 3334456
Q ss_pred ccCCC-CCCCcEEEEEeeeeeeCC-eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccc
Q 006442 414 FPERG-RSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN 491 (645)
Q Consensus 414 ~p~~~-~~~~~~i~~~~v~~~y~~-~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~ 491 (645)
|++.. ..++.+++++|+++.|++ +.+++++||.|.+|++|||+||||+|||||||+|+|...|.+|+|.+. ..+..+
T Consensus 310 f~~~~~~~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g-~~v~ig 388 (530)
T COG0488 310 FPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVG-ETVKIG 388 (530)
T ss_pred ccCCcccCCCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeC-CceEEE
Confidence 66655 478999999999999965 689999999999999999999999999999999999999999999986 447889
Q ss_pred hhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCC
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt 571 (645)
||.|+..... .+.|+.+++...........++..|++|+|..+...+++..||||||.||+||+.++.+|++|||||||
T Consensus 389 yf~Q~~~~l~-~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPT 467 (530)
T COG0488 389 YFDQHRDELD-PDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPT 467 (530)
T ss_pred EEEehhhhcC-ccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCC
Confidence 9999875433 778999999887755557789999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHHH
Q 006442 572 NHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSLW 632 (645)
Q Consensus 572 ~~LD~~s~~~l~~~l~~~~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~~ 632 (645)
||||.++.+.|.++|.+|.+|||+||||.+|+.++|+++|.+++ ++..+.|+|++|.+..
T Consensus 468 NhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~~ 527 (530)
T COG0488 468 NHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQK 527 (530)
T ss_pred ccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHhh
Confidence 99999999999999999999999999999999999999999999 8888999999998754
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-90 Score=790.71 Aligned_cols=516 Identities=31% Similarity=0.536 Sum_probs=415.7
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCCCC
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR 176 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~ 176 (645)
+|+++|++++|+++++|+||||+|++|+++||+||||||||||||+|+|+++|++|+|.+++ ...++|++|++.. ...
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~-~~~i~~~~q~~~~-~~~ 78 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPG-NWQLAWVNQETPA-LPQ 78 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-CCEEEEEecCCCC-CCC
Confidence 48999999999999999999999999999999999999999999999999999999999975 3579999997533 245
Q ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCccccccc
Q 006442 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (645)
Q Consensus 177 Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~ 256 (645)
|+.+++...+.........+. ..... ... ..+..+.......+.+..+.++.+++..+|+..+..+++
T Consensus 79 ~~~~~v~~~~~~~~~l~~~~~----~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 146 (638)
T PRK10636 79 PALEYVIDGDREYRQLEAQLH----DANER-NDG-------HAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP 146 (638)
T ss_pred CHHHHHHHhhHHHHHHHHHHH----HHhcc-CCH-------HHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence 777776532211100000000 00000 000 001111111122345566788999999999975577899
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcCceeEE
Q 006442 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT 336 (645)
Q Consensus 257 ~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~i~~l~~G~~~~ 336 (645)
+.+|||||||||+|||||+.+|+||||||||||||+.++.||.++|++.+.|||+||||++++..+||+|+++++|++..
T Consensus 147 ~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~ 226 (638)
T PRK10636 147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFE 226 (638)
T ss_pred hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999988
Q ss_pred eccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-chhhHHHHHHHHHHHHHhhhhcccccccceEEecc
Q 006442 337 YEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGA-NSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFP 415 (645)
Q Consensus 337 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~l~rl~~~~~~~~~~~~~~~~~~~p 415 (645)
|.|+|+.|...+......+...|.++++++++..+++.+....+ .+.++.++.+.++++... .++...+...+.+|
T Consensus 227 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~a~~~~~a~~r~~~l~~~~~~---~~~~~~~~~~~~~~ 303 (638)
T PRK10636 227 YTGNYSSFEVQRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELI---APAHVDNPFHFSFR 303 (638)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcc---cccccCCceeEecC
Confidence 99999999988776677777888889998888888887643321 122334455555554421 11111234455666
Q ss_pred CCCCCCCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhcc
Q 006442 416 ERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQ 495 (645)
Q Consensus 416 ~~~~~~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q 495 (645)
++...++.+|+++|+++.|+++.+|+++||+|.+|+++||+||||||||||+++|+|+++|++|+|.+++ .+..+|++|
T Consensus 304 ~~~~~~~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~-~~~igy~~Q 382 (638)
T PRK10636 304 APESLPNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK-GIKLGYFAQ 382 (638)
T ss_pred CCccCCCceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC-CEEEEEecC
Confidence 6555678899999999999988999999999999999999999999999999999999999999999964 245678888
Q ss_pred chhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCC
Q 006442 496 NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575 (645)
Q Consensus 496 ~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD 575 (645)
++...+....++.+++...........+..+|+.+++..+..++++..|||||||||+|||+|+.+|+||||||||||||
T Consensus 383 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD 462 (638)
T PRK10636 383 HQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462 (638)
T ss_pred cchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 64334556678888765322222345688999999996556789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 576 IPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 576 ~~s~~~l~~~l~~~~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
+.++..|.++|.++++|||+||||++++..+||++++|++|++..+.|+|++|.+
T Consensus 463 ~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 463 LDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 9999999999999988999999999999999999999999999888999999954
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-89 Score=783.96 Aligned_cols=521 Identities=33% Similarity=0.578 Sum_probs=412.9
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCCCC
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR 176 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~ 176 (645)
+|+++|++++|+++++|+|+||+|++|+++||+|||||||||||++|+|+++|++|+|.+++ ...++|++|.+......
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~-~~~~~~l~q~~~~~~~~ 81 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ-DLIVARLQQDPPRNVEG 81 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCC-CCEEEEeccCCCCCCCC
Confidence 59999999999988899999999999999999999999999999999999999999999985 45689999976543456
Q ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCccccccc
Q 006442 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (645)
Q Consensus 177 Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~ 256 (645)
++.+++..++............+...+.. ....+ .+..+..+.......+.+..+.++.+++..+|+. .+++
T Consensus 82 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~---~~~~ 153 (635)
T PRK11147 82 TVYDFVAEGIEEQAEYLKRYHDISHLVET-DPSEK----NLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD---PDAA 153 (635)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHhcc-CchHH----HHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC---CCCc
Confidence 88888653322111111111111111100 00000 1111111111112233455677899999999995 3788
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcCceeEE
Q 006442 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT 336 (645)
Q Consensus 257 ~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~i~~l~~G~~~~ 336 (645)
+.+|||||||||+|||||+.+|+||||||||||||+.+++||.++|++.+.|||+||||++++..+||+|+++++|++..
T Consensus 154 ~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~ 233 (635)
T PRK11147 154 LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVS 233 (635)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999998877899999999999999999999999999988
Q ss_pred eccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhhcccccccceEEeccC
Q 006442 337 YEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPE 416 (645)
Q Consensus 337 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~rl~~~~~~~~~~~~~~~~~~~p~ 416 (645)
|.|+|+.|..++......+...+..+++++++...++++ ...+...+..+..+.+++++... ..++.......+.+|.
T Consensus 234 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 311 (635)
T PRK11147 234 YPGNYDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQ-GIKARRTRNEGRVRALKALRRER-SERREVMGTAKMQVEE 311 (635)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhHHHHHHHHHHhhhhh-ccccccCCceeEEeCC
Confidence 999999999888776666667777777777777666665 22111111133344444443211 1111112234555665
Q ss_pred CCCCCCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccc
Q 006442 417 RGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN 496 (645)
Q Consensus 417 ~~~~~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~ 496 (645)
....++.+|+++|+++.|+++.+|+++||+|.+|+++||+|||||||||||++|+|+++|++|+|.+ |.++..+|+.|+
T Consensus 312 ~~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~~i~y~~q~ 390 (635)
T PRK11147 312 ASRSGKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLEVAYFDQH 390 (635)
T ss_pred CCCCCCceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCcEEEEEeCc
Confidence 5556788999999999999888999999999999999999999999999999999999999999999 555667888876
Q ss_pred hhhcCCCCCCHHHHHHhhhccc----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCC
Q 006442 497 QAEALDLDKTVLETVAEAAEDW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572 (645)
Q Consensus 497 ~~~~l~~~~tv~e~v~~~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~ 572 (645)
. ..+.++.|+.+++....... ....+..+|+.+++..+..++++.+|||||||||+|||||+.+|++||||||||
T Consensus 391 ~-~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~ 469 (635)
T PRK11147 391 R-AELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTN 469 (635)
T ss_pred c-cccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 4 35677889999997643211 134578899999996566799999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhCCEEEEEe-CCeEEeeCCChhHHHH
Q 006442 573 HLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVK-GSNLQDYAGDYNQVQS 630 (645)
Q Consensus 573 ~LD~~s~~~l~~~l~~~~~tvi~vsHd~~~i~~~~d~v~~l~-~g~i~~~~~~~~~~~~ 630 (645)
|||+.++..|.++|+++++|||+||||++++..+||++++|+ +|++..|.|+|++|.+
T Consensus 470 ~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 470 DLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred CCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 999999999999999998899999999999999999999998 8999999999999965
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-87 Score=756.01 Aligned_cols=526 Identities=32% Similarity=0.518 Sum_probs=405.5
Q ss_pred ccEEEEeEEEEeC-CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCC
Q 006442 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (645)
Q Consensus 96 ~~i~i~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~ 174 (645)
++|+++|++++|+ ++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++ ...||||+|++.+++
T Consensus 5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-~~~i~~v~Q~~~~~~ 83 (556)
T PRK11819 5 YIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-GIKVGYLPQEPQLDP 83 (556)
T ss_pred EEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-CCEEEEEecCCCCCC
Confidence 4799999999998 78899999999999999999999999999999999999999999999874 457999999998878
Q ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCccccc
Q 006442 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (645)
Q Consensus 175 ~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~ 254 (645)
..||.||+...+.................. ...+.+..+++....+.......+.++.+.++.+++..+|+. ..+
T Consensus 84 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~ 158 (556)
T PRK11819 84 EKTVRENVEEGVAEVKAALDRFNEIYAAYA---EPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP--PWD 158 (556)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhc---cCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC--ccc
Confidence 889999986432110000000000000000 000011112222333333344455667778899999999995 368
Q ss_pred ccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcCcee
Q 006442 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (645)
Q Consensus 255 ~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~i~~l~~G~~ 334 (645)
+++.+|||||||||+|||||+.+|++|||||||||||+.++.++.++|++.+.|||+||||++++..+||+|+++++|++
T Consensus 159 ~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~i 238 (556)
T PRK11819 159 AKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRG 238 (556)
T ss_pred CchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCEE
Confidence 89999999999999999999999999999999999999999999999988778999999999999999999999999998
Q ss_pred EEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhhcccccccceEEec
Q 006442 335 RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRF 414 (645)
Q Consensus 335 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~rl~~~~~~~~~~~~~~~~~~~ 414 (645)
..|.|+|+.|...+........+.++++++.+.+....+++... ..........+.+++.... ..+..++...+.+
T Consensus 239 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 314 (556)
T PRK11819 239 IPWEGNYSSWLEQKAKRLAQEEKQEAARQKALKRELEWVRQSPK-ARQAKSKARLARYEELLSE---EYQKRNETNEIFI 314 (556)
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhhcc---cccccCCCceeec
Confidence 77999999998776554444445566665555544444432110 0000111111222222111 1111111122333
Q ss_pred cCCCCCCCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhc
Q 006442 415 PERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFE 494 (645)
Q Consensus 415 p~~~~~~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~ 494 (645)
|......+++|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ ++..+|++
T Consensus 315 ~~~~~~~~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~~i~~v~ 393 (556)
T PRK11819 315 PPGPRLGDKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TVKLAYVD 393 (556)
T ss_pred CCCCCCCCeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ceEEEEEe
Confidence 33333356789999999999988899999999999999999999999999999999999999999999954 44567888
Q ss_pred cchhhcCCCCCCHHHHHHhhhcc----ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCC
Q 006442 495 QNQAEALDLDKTVLETVAEAAED----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (645)
Q Consensus 495 q~~~~~l~~~~tv~e~v~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP 570 (645)
|+. ..+.+..|+.+++...... .....++.+|+.+++.....++++.+|||||||||+|||||+.+|++||||||
T Consensus 394 q~~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 472 (556)
T PRK11819 394 QSR-DALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEP 472 (556)
T ss_pred Cch-hhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 764 2456778999999764321 12334567899999954457899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhCCEEEEEeC-CeEEeeCCChhHHHHHHh
Q 006442 571 TNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKG-SNLQDYAGDYNQVQSLWF 633 (645)
Q Consensus 571 t~~LD~~s~~~l~~~l~~~~~tvi~vsHd~~~i~~~~d~v~~l~~-g~i~~~~~~~~~~~~~~~ 633 (645)
|+|||+.++..+.+.|.++.+|||+||||++++..+||++++|++ |++..+.|+|++|++...
T Consensus 473 t~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~~~ 536 (556)
T PRK11819 473 TNDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEEDKK 536 (556)
T ss_pred CCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHHHH
Confidence 999999999999999999988999999999999999999999985 888888999999976544
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-86 Score=748.98 Aligned_cols=524 Identities=33% Similarity=0.571 Sum_probs=398.0
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCCCC
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR 176 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~ 176 (645)
+|+++|++|+|+++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..|+|++|++.++...
T Consensus 1 ml~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-~~i~~~~q~~~~~~~~ 79 (530)
T PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-ERLGKLRQDQFAFEEF 79 (530)
T ss_pred CEEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-CEEEEEeccCCcCCCC
Confidence 389999999999888999999999999999999999999999999999999999999999753 5799999998887888
Q ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCccccccc
Q 006442 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (645)
Q Consensus 177 Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~ 256 (645)
||.||+................+.............+ ............+..+.++.++++.+|+.....+++
T Consensus 80 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 152 (530)
T PRK15064 80 TVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKV-------ADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGL 152 (530)
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHH-------HHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCc
Confidence 9999986432110000000000000000000000000 111111112333445667889999999964344678
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcCceeEE
Q 006442 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT 336 (645)
Q Consensus 257 ~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~i~~l~~G~~~~ 336 (645)
+.+|||||||||+|||||+.+|+||||||||+|||+.++.+|.++|++.+.|||+||||++++.++||+|+++++|++..
T Consensus 153 ~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~ 232 (530)
T PRK15064 153 MSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRV 232 (530)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEE
Confidence 89999999999999999999999999999999999999999999998889999999999999999999999999999867
Q ss_pred eccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-hhhHHHHHHHHHHHHHhhhhcccccccceEEecc
Q 006442 337 YEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGAN-SGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFP 415 (645)
Q Consensus 337 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~rl~~~~~~~~~~~~~~~~~~~p 415 (645)
+.|++++|..+.........+++..+++++++....+.+...... ...+....+.++++.... . .+.........++
T Consensus 233 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~ 310 (530)
T PRK15064 233 YPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKAKQATSRAKQIDKIKLEE-V-KPSSRQNPFIRFE 310 (530)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhhccccc-c-CCccccCceeeCC
Confidence 899999987665544444455555666666555544443211110 011111122222211000 0 0100001111223
Q ss_pred CCCCCCCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhcc
Q 006442 416 ERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQ 495 (645)
Q Consensus 416 ~~~~~~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q 495 (645)
.....++.+|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.. ..+|++|
T Consensus 311 ~~~~~~~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~-~i~~~~q 389 (530)
T PRK15064 311 QDKKLHRNALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENA-NIGYYAQ 389 (530)
T ss_pred CCCCCCCceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCce-EEEEEcc
Confidence 222334678999999999988889999999999999999999999999999999999999999999998743 4578877
Q ss_pred chhhcCCCCCCHHHHHHhhh-ccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCC
Q 006442 496 NQAEALDLDKTVLETVAEAA-EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574 (645)
Q Consensus 496 ~~~~~l~~~~tv~e~v~~~~-~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~L 574 (645)
+....+....|+.+++.... .......+..+|+.+++..+..++++.+|||||||||+|||||+.+|++|||||||++|
T Consensus 390 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~L 469 (530)
T PRK15064 390 DHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHM 469 (530)
T ss_pred cccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 64333555689999986432 12234567889999999545679999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHH
Q 006442 575 DIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSL 631 (645)
Q Consensus 575 D~~s~~~l~~~l~~~~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~ 631 (645)
|+.+++.+.+.|+++++|||+||||++++..+|||+++|++|+++.+.|+++++.+.
T Consensus 470 D~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 470 DMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 999999999999999889999999999999999999999999998778998887654
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-88 Score=713.18 Aligned_cols=526 Identities=40% Similarity=0.645 Sum_probs=464.6
Q ss_pred CCCCCccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccC
Q 006442 91 ASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170 (645)
Q Consensus 91 ~~~~~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~ 170 (645)
+......+.++|++++|.+..+++|+.|++++|+.|||+|+|||||||+|++|.|-..|..- +..+..+.++.
T Consensus 69 s~~~s~dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~-------~~d~y~ls~e~ 141 (614)
T KOG0927|consen 69 SHPISRDVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPE-------HIDFYLLSREI 141 (614)
T ss_pred cCcccccceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCc-------ccchhhhcccC
Confidence 33556679999999999999999999999999999999999999999999999998888432 33456667765
Q ss_pred ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCc
Q 006442 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (645)
Q Consensus 171 ~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~ 250 (645)
......+|..-++....+........+++...++. ...++++.++.+....+....+.++.++|..+|+..
T Consensus 142 ~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~---------~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~ 212 (614)
T KOG0927|consen 142 EPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDD---------KEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLS 212 (614)
T ss_pred CCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc---------hhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCH
Confidence 44333344444445554444444444444443322 123445556677788899999999999999999999
Q ss_pred ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCC-eEEEEecCHHHHHhhcCeEEEE
Q 006442 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDV-PMVIISHDRAFLDQLCTKIVET 329 (645)
Q Consensus 251 ~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~-tvIivsHd~~~l~~~~d~i~~l 329 (645)
+..++.+.+||||||+|++|||+|+.+|++|||||||||||++++.||.++|.++.. ++|+++|+.+|++.+|++|+.+
T Consensus 213 ~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l 292 (614)
T KOG0927|consen 213 EMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHL 292 (614)
T ss_pred hHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhhee
Confidence 999999999999999999999999999999999999999999999999999998877 8999999999999999999999
Q ss_pred cCceeEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CchhhHHHHHHHHHHHHHhhhhcccccc
Q 006442 330 EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAG--ANSGRASSAEKKLERLQEEEQIEKPFQR 407 (645)
Q Consensus 330 ~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~l~rl~~~~~~~~~~~~ 407 (645)
++++...|.|||++|...+.++...+..+|+|++++++....++.+...+ ...+++.+.++.+.++++....+++..+
T Consensus 293 ~~kkl~~y~Gnydqy~~tr~E~~~~q~K~~~kqqk~i~~~K~~ia~~g~g~a~~~rka~s~~K~~~km~~~gL~ek~~~~ 372 (614)
T KOG0927|consen 293 DNKKLIYYEGNYDQYVKTRSELEENQMKAYEKQQKQIAHMKDLIARFGHGSAKLGRKAQSKEKTLDKMEADGLTEKVVGE 372 (614)
T ss_pred cccceeeecCCHHHHhhHHHHHhHHHHHHHHHHHhHHHHhhHHHHhhcccchhhhHHHhhhhhhHHHHhhccccccccCC
Confidence 99999999999999999999999999999999999999999999998765 3446788889999999888888888888
Q ss_pred cceEEeccCCCCCCCcEEEEEeeeeeeCCe-eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECce
Q 006442 408 KQMKIRFPERGRSGRSVVTIKNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (645)
Q Consensus 408 ~~~~~~~p~~~~~~~~~i~~~~v~~~y~~~-~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~ 486 (645)
+...+.||..+..+.++|.++|++|+|.++ .++++++|-|..++++++|||||||||||||+++|.+.|..|.|....+
T Consensus 373 k~l~~~f~~vg~~p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H 452 (614)
T KOG0927|consen 373 KVLSFRFPEVGKIPPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH 452 (614)
T ss_pred ceEEEEcccccCCCCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc
Confidence 889999999888889999999999999876 5899999999999999999999999999999999999999999987655
Q ss_pred ecccchhccchhhcCCCCCCHHHHHHhhhcc-ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeE
Q 006442 487 NVLPNYFEQNQAEALDLDKTVLETVAEAAED-WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (645)
Q Consensus 487 ~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 565 (645)
... .+|.|+..+.++.+.++.+++...... +..++++.+|++||+..+..+.++++||+|||.||++|++++++|.||
T Consensus 453 ~~~-~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lL 531 (614)
T KOG0927|consen 453 NKL-PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLL 531 (614)
T ss_pred ccc-hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEE
Confidence 543 488999888999999999999988774 778899999999999888899999999999999999999999999999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHHHh
Q 006442 566 VLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSLWF 633 (645)
Q Consensus 566 lLDEPt~~LD~~s~~~l~~~l~~~~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~~~ 633 (645)
||||||||||.++...+.++|++|.++||+||||..+|.++++++|+.++|.+..+.|+|.+|.+...
T Consensus 532 lLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk~~l~ 599 (614)
T KOG0927|consen 532 LLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYKEHLK 599 (614)
T ss_pred EecCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999975443
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-86 Score=746.64 Aligned_cols=526 Identities=32% Similarity=0.522 Sum_probs=400.6
Q ss_pred ccEEEEeEEEEeC-CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCC
Q 006442 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (645)
Q Consensus 96 ~~i~i~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~ 174 (645)
.+|+++|++++|+ ++++|+|+||+|++|++++|+|+|||||||||++|+|+++|++|+|.+++ ...|||++|++.+++
T Consensus 3 ~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~~i~~v~Q~~~~~~ 81 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-GIKVGYLPQEPQLDP 81 (552)
T ss_pred EEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-CCEEEEEeccCCCCC
Confidence 3699999999998 67899999999999999999999999999999999999999999999874 457999999998888
Q ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCccccc
Q 006442 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (645)
Q Consensus 175 ~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~ 254 (645)
+.||.||+...+................+... . +.....+.....+....+.++.+.++.++.+++..+|+. ..+
T Consensus 82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~ 156 (552)
T TIGR03719 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAEP--D-ADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP--PWD 156 (552)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccC--c-hhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC--ccc
Confidence 89999998643221000000000000000000 0 000001111222223334455566677888999999994 358
Q ss_pred ccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcCcee
Q 006442 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (645)
Q Consensus 255 ~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~i~~l~~G~~ 334 (645)
+++.+|||||||||+|||||+.+|++|||||||++||+.++++|.++|++.+.|||+||||++++..+||+|+++++|++
T Consensus 157 ~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i 236 (552)
T TIGR03719 157 ADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRG 236 (552)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEE
Confidence 88999999999999999999999999999999999999999999999988778999999999999999999999999998
Q ss_pred EEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhhcccccccceEEec
Q 006442 335 RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRF 414 (645)
Q Consensus 335 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~rl~~~~~~~~~~~~~~~~~~~ 414 (645)
..+.|+|+.|..........+...+.+.++++.+....+.+.... .........+.++++.+. ..+...+..++.+
T Consensus 237 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 312 (552)
T TIGR03719 237 IPWEGNYSSWLEQKEKRLEQEEKEESARQKALKRELEWVRSSPKA-RQAKSKARLARYEELLSQ---EFQKRNETAEIYI 312 (552)
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHhhhhh---cccccCCCceeec
Confidence 778999999887665444444455555555554443333221000 000111111222222211 1111111122233
Q ss_pred cCCCCCCCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhc
Q 006442 415 PERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFE 494 (645)
Q Consensus 415 p~~~~~~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~ 494 (645)
+.....++++|+++|+++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ ++..+|++
T Consensus 313 ~~~~~~~~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~~i~~v~ 391 (552)
T TIGR03719 313 PPGPRLGDKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TVKLAYVD 391 (552)
T ss_pred CCCCCCCCeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ceEEEEEe
Confidence 33323356789999999999888899999999999999999999999999999999999999999999954 44567888
Q ss_pred cchhhcCCCCCCHHHHHHhhhcc----ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCC
Q 006442 495 QNQAEALDLDKTVLETVAEAAED----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (645)
Q Consensus 495 q~~~~~l~~~~tv~e~v~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP 570 (645)
|+. ..+.+..|+.+++...... .....+..+++.+++.....++++.+|||||||||+|||||+.+|++||||||
T Consensus 392 q~~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEP 470 (552)
T TIGR03719 392 QSR-DALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEP 470 (552)
T ss_pred CCc-cccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 763 2356778999999865321 11234567899999954457899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhCCEEEEEeC-CeEEeeCCChhHHHHHHh
Q 006442 571 TNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKG-SNLQDYAGDYNQVQSLWF 633 (645)
Q Consensus 571 t~~LD~~s~~~l~~~l~~~~~tvi~vsHd~~~i~~~~d~v~~l~~-g~i~~~~~~~~~~~~~~~ 633 (645)
|+|||+.+++.+.+.|.++.+|||+||||++++.++||++++|++ |++..+.|++++|.+...
T Consensus 471 t~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~~~~ 534 (552)
T TIGR03719 471 TNDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEEDKK 534 (552)
T ss_pred CCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHHHHH
Confidence 999999999999999999988999999999999999999999986 688888899998876544
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-83 Score=738.06 Aligned_cols=520 Identities=29% Similarity=0.488 Sum_probs=399.7
Q ss_pred CCccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccC
Q 006442 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS 173 (645)
Q Consensus 94 ~~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~ 173 (645)
...+|+++|++|+|+++++|+|+||+|++|+++||||+|||||||||++|+|... .| + ....+|+|++|++. .
T Consensus 174 ~~~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~--~g---~-p~~g~I~~~~Q~~~-g 246 (718)
T PLN03073 174 AIKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAI--DG---I-PKNCQILHVEQEVV-G 246 (718)
T ss_pred CceeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CC---C-CCCCEEEEEeccCC-C
Confidence 4557999999999998889999999999999999999999999999999999741 13 1 13456889999854 3
Q ss_pred CCCCHHHHHHHhhHHHHHHHHH-HHHHHHH--H--h----------hccchhHHHHhHHHHHHHHHHHHHhCChhcHHHH
Q 006442 174 MSRTVREEFMSAFKEEMEIAGK-LERVQKA--L--E----------SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (645)
Q Consensus 174 ~~~Tv~eni~~~~~~~~~~~~~-~~~~~~~--~--~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (645)
...|+.+.+............. ...+.+. + . ...... ..+.++...+.......+.|.++.+
T Consensus 247 ~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~---~~~~~r~~~~~~~~~~~~~~~~~~r 323 (718)
T PLN03073 247 DDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDK---DAVSQRLEEIYKRLELIDAYTAEAR 323 (718)
T ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccch---HHHHHHHHHHHHHHHhcCcchHHHH
Confidence 4567877654322111111000 0000000 0 0 000000 1122333444455566778899999
Q ss_pred HHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHH
Q 006442 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAF 318 (645)
Q Consensus 239 i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~ 318 (645)
+.++|..+||.....++++.+|||||||||+|||||+.+|++|||||||+|||+.++.||.++|++.+.|||+||||+++
T Consensus 324 ~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~ 403 (718)
T PLN03073 324 AASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREF 403 (718)
T ss_pred HHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence 99999999997667889999999999999999999999999999999999999999999999999889999999999999
Q ss_pred HHhhcCeEEEEcCceeEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-hhhHHHHHHHHHHHHH
Q 006442 319 LDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGAN-SGRASSAEKKLERLQE 397 (645)
Q Consensus 319 l~~~~d~i~~l~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~rl~~ 397 (645)
+..+||+|+++++|++..|.|+|+.|..........+.+.|+.++++.++++..+++.+..+. +..+.+..+.++++..
T Consensus 404 l~~~~d~i~~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~e~~~k~~~~l~~~i~~~~~~a~~~~~~~s~~k~l~~~~~ 483 (718)
T PLN03073 404 LNTVVTDILHLHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERSRSHMQAFIDKFRYNAKRASLVQSRIKALDRLGH 483 (718)
T ss_pred HHHhCCEEEEEECCEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhcchHHHHHhh
Confidence 999999999999999988999999998877777777778888888888777777766443211 1122222333444322
Q ss_pred hhhhcccccccceEEeccCC-CCCCCcEEEEEeeeeeeCC-eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 398 EEQIEKPFQRKQMKIRFPER-GRSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 398 ~~~~~~~~~~~~~~~~~p~~-~~~~~~~i~~~~v~~~y~~-~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
.. .+.......+.+|.. ..+++++|+++|+++.|++ +.+|+++||+|++|++++|+|||||||||||++|+|+++
T Consensus 484 ~~---~~~~~~~~~~~~~~~~~~~~~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~ 560 (718)
T PLN03073 484 VD---AVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ 560 (718)
T ss_pred hh---ccccCCCceeecCCCccCCCCceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 11 111111222334432 2345678999999999964 569999999999999999999999999999999999999
Q ss_pred CCeeEEEECceecccchhccchhhcCCCCCCHHHHHHh----hhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHH
Q 006442 476 PRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAE----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKAR 551 (645)
Q Consensus 476 p~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~----~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqr 551 (645)
|++|+|.+++. ...+|++|+.... .++.++... ........++..+|+.+++..+..++++.+||||||||
T Consensus 561 p~~G~I~~~~~-~~igyv~Q~~~~~----l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqR 635 (718)
T PLN03073 561 PSSGTVFRSAK-VRMAVFSQHHVDG----LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR 635 (718)
T ss_pred CCCceEEECCc-eeEEEEecccccc----CCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHH
Confidence 99999998763 3567888764222 233333221 11123356788999999996556789999999999999
Q ss_pred HHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHH
Q 006442 552 LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSL 631 (645)
Q Consensus 552 v~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~ 631 (645)
|+|||||+.+|++|||||||+|||+.+++.+.+.|.++++|||+||||++++..+||++++|++|+++.+.|++++|.+.
T Consensus 636 vaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~~~ 715 (718)
T PLN03073 636 VAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYKKT 715 (718)
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHHHH
Confidence 99999999999999999999999999999999999988789999999999999999999999999998788999988653
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-81 Score=679.59 Aligned_cols=454 Identities=23% Similarity=0.371 Sum_probs=362.5
Q ss_pred ccEEEEeEEEEeCCe----eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCC----ccEEEEcCCC-------
Q 006442 96 SGVKLENISKSYKGV----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD----SGNVIKAKSN------- 160 (645)
Q Consensus 96 ~~i~i~nls~~y~~~----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~----~G~I~~~~~~------- 160 (645)
+.|+++|+++.|... .+++||||+|.+||++||||.+||||||+.++|.|++++. +|+|.++|.+
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 369999999999542 5999999999999999999999999999999999999987 8999998752
Q ss_pred -------ceEEEEeccCcc--CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCC
Q 006442 161 -------MKIAFLSQEFEV--SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (645)
Q Consensus 161 -------~~i~~v~Q~~~~--~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (645)
..|+|+||+|.- .+..||.+-|...+.- .....
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~--------------------------------------h~~~~ 125 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRL--------------------------------------HGKGS 125 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHH--------------------------------------hcccc
Confidence 369999999843 3445776665422110 00111
Q ss_pred hhcHHHHHHhhchhcCCCcccc-cccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCC
Q 006442 232 LDTLDAKVSKLMPELGFTADDG-DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQD 306 (645)
Q Consensus 232 ~~~~~~~i~~ll~~lgl~~~~~-~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g 306 (645)
..+.++++.++|+.+|+++... ++++++|||||||||.||+||+++|++||+||||.+||+.+..++.++|+ +.|
T Consensus 126 ~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g 205 (539)
T COG1123 126 RAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELG 205 (539)
T ss_pred HHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcC
Confidence 3355678889999999986655 47999999999999999999999999999999999999999999988874 479
Q ss_pred CeEEEEecCHHHHHhhcCeEEEEcCceeEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHH
Q 006442 307 VPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRAS 386 (645)
Q Consensus 307 ~tvIivsHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 386 (645)
.++|+||||++.+.++||||++|.+|++. -.|..++.+.+... .| +..++...
T Consensus 206 ~a~l~ITHDl~Vva~~aDrv~Vm~~G~iV-E~G~~~~i~~~p~h-------pY---------T~~Ll~a~---------- 258 (539)
T COG1123 206 MAVLFITHDLGVVAELADRVVVMYKGEIV-ETGPTEEILSNPQH-------PY---------TRGLLAAV---------- 258 (539)
T ss_pred cEEEEEcCCHHHHHHhcCeEEEEECCEEE-EecCHHHHHhccCC-------cc---------cHHHHhhC----------
Confidence 99999999999999999999999999984 44554433221110 00 00011000
Q ss_pred HHHHHHHHHHHhhhhcccccccceEEeccCCCCCCCcEEEEEeeeeeeCC-----------eeceeeeeEEEecCcEEEE
Q 006442 387 SAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-----------RLLFNRANLTIERGEKTAI 455 (645)
Q Consensus 387 ~~~~~l~rl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~-----------~~~l~~vsl~i~~Ge~v~i 455 (645)
+.....+..... +.......++++++|+++.|.. ..+++||||+|.+||++||
T Consensus 259 ---------------p~~~~~~~~~~~-~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lgl 322 (539)
T COG1123 259 ---------------PRLGDEKIIRLP-RRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGL 322 (539)
T ss_pred ---------------CCcccccccccc-cccccccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEE
Confidence 000000000000 0011126788999999999973 2579999999999999999
Q ss_pred EcCCCCcHHHHHHHHHcCCCCCeeEEEECceec------------ccchhccchhhcCCCCCCHHHHHHhhhcc------
Q 006442 456 IGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------LPNYFEQNQAEALDLDKTVLETVAEAAED------ 517 (645)
Q Consensus 456 ~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~------------~~~~~~q~~~~~l~~~~tv~e~v~~~~~~------ 517 (645)
||+||||||||.|+|+|+++|++|+|.++|.++ ...+++|++...+++..||.+++......
T Consensus 323 VGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~ 402 (539)
T COG1123 323 VGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSG 402 (539)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccch
Confidence 999999999999999999999999999998762 12356788888899999999999875421
Q ss_pred -ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHh----cCce
Q 006442 518 -WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE----YKGT 592 (645)
Q Consensus 518 -~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~----~~~t 592 (645)
...+.+.++|++.++..+..+++|++||||||||+||||||+.+|++||+|||||.||+..+..+.++|.+ ++.|
T Consensus 403 ~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t 482 (539)
T COG1123 403 AERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLT 482 (539)
T ss_pred HHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCE
Confidence 12235788899999988889999999999999999999999999999999999999999999999988864 4679
Q ss_pred EEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHH
Q 006442 593 VITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSL 631 (645)
Q Consensus 593 vi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~ 631 (645)
.|+||||+.++..+||||++|++|+|++. |+.+..++.
T Consensus 483 ~lfISHDl~vV~~i~drv~vm~~G~iVE~-G~~~~v~~~ 520 (539)
T COG1123 483 YLFISHDLAVVRYIADRVAVMYDGRIVEE-GPTEKVFEN 520 (539)
T ss_pred EEEEeCCHHHHHhhCceEEEEECCeEEEe-CCHHHHhcC
Confidence 99999999999999999999999999974 566665543
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-81 Score=715.27 Aligned_cols=471 Identities=18% Similarity=0.316 Sum_probs=357.6
Q ss_pred CccEEEEeEEEEeCC----eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCC-----------
Q 006442 95 SSGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS----------- 159 (645)
Q Consensus 95 ~~~i~i~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~----------- 159 (645)
.++|+++|++++|++ .++|+||||+|++|+++||+|+||||||||+++|+|+++|++|+|.+++.
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccc
Confidence 457999999999963 46999999999999999999999999999999999999999999987652
Q ss_pred -------------CceEEEEeccC--ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHH
Q 006442 160 -------------NMKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQ 224 (645)
Q Consensus 160 -------------~~~i~~v~Q~~--~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (645)
...|||++|+| .+++..||.||+...... .
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~---------------~-------------------- 134 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRL---------------H-------------------- 134 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHH---------------h--------------------
Confidence 12599999998 466778999998632110 0
Q ss_pred HHHHhCChhcHHHHHHhhchhcCCCc--ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 006442 225 RKAQAVNLDTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL 302 (645)
Q Consensus 225 ~~~~~~~~~~~~~~i~~ll~~lgl~~--~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L 302 (645)
..++.....+++.++++.+|+.. ...++++.+|||||||||+|||||+.+|+||||||||++||+.+++.+.++|
T Consensus 135 ---~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll 211 (623)
T PRK10261 135 ---QGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLI 211 (623)
T ss_pred ---cCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHH
Confidence 00112233456778899999963 3578899999999999999999999999999999999999999999888876
Q ss_pred c----cCCCeEEEEecCHHHHHhhcCeEEEEcCceeEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 006442 303 G----KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGA 378 (645)
Q Consensus 303 ~----~~g~tvIivsHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (645)
+ +.|+|||+||||++++.++||+|++|++|++. ..|++.++..... ..|. ..++.....
T Consensus 212 ~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~-~~g~~~~~~~~~~-------~~~~---------~~l~~~~~~ 274 (623)
T PRK10261 212 KVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV-ETGSVEQIFHAPQ-------HPYT---------RALLAAVPQ 274 (623)
T ss_pred HHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeec-ccCCHHHhhcCCC-------Chhh---------hhhhhccCc
Confidence 4 24899999999999999999999999999984 4677655432110 0000 000000000
Q ss_pred -CCchhhHHHHHHHHHHHHHhhhhcccccccceEEeccCCCCCCCcEEEEEeeeeeeCC-----------eeceeeeeEE
Q 006442 379 -GANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-----------RLLFNRANLT 446 (645)
Q Consensus 379 -~~~~~~~~~~~~~l~rl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~-----------~~~l~~vsl~ 446 (645)
....++.. ....+... ...+..... ..++.....++++|+++|+++.|+. +.+|+++||+
T Consensus 275 ~~~~~~~~~--~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~ 346 (623)
T PRK10261 275 LGAMKGLDY--PRRFPLIS----LEHPAKQEP--PIEQDTVVDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFD 346 (623)
T ss_pred ccccccccC--Cccccccc----cccccccCc--ccccccccCCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeE
Confidence 00000000 00000000 000000000 0001111124578999999999961 4689999999
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-------------cchhccchhhcCCCCCCHHHHHHh
Q 006442 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------PNYFEQNQAEALDLDKTVLETVAE 513 (645)
Q Consensus 447 i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------------~~~~~q~~~~~l~~~~tv~e~v~~ 513 (645)
|++||++||+|+||||||||+++|+|+++|++|+|.++|.++. .+|++|+....+++..|+.+++..
T Consensus 347 i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~ 426 (623)
T PRK10261 347 LWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIME 426 (623)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999997652 245666543356778899999876
Q ss_pred hhc--c-c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHH
Q 006442 514 AAE--D-W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI 586 (645)
Q Consensus 514 ~~~--~-~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l 586 (645)
... . . ...++.++|+.+|+..+..++++++|||||||||+|||||+.+|+||||||||++||+.++..+.++|
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll 506 (623)
T PRK10261 427 PLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLL 506 (623)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 421 1 1 12457789999999645679999999999999999999999999999999999999999999999999
Q ss_pred Hh----cCceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 587 SE----YKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 587 ~~----~~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
++ ++.|||+||||++++.++||||++|++|++++ .|..++++
T Consensus 507 ~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~-~g~~~~i~ 552 (623)
T PRK10261 507 LDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVE-IGPRRAVF 552 (623)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecCHHHHh
Confidence 64 35699999999999999999999999999985 46555543
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-81 Score=705.20 Aligned_cols=442 Identities=22% Similarity=0.317 Sum_probs=351.1
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCC--CccEEEEcCCC-----------ce
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP--DSGNVIKAKSN-----------MK 162 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p--~~G~I~~~~~~-----------~~ 162 (645)
++|+++|++++|+++++|+|+||+|++|++++|+||||||||||+|+|+|+++| ++|+|.++|.. ..
T Consensus 4 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (506)
T PRK13549 4 YLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAG 83 (506)
T ss_pred ceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCC
Confidence 369999999999988899999999999999999999999999999999999996 89999997642 34
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhh
Q 006442 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (645)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (645)
++|++|++.+++..||+||+....... .. ...+.....+++.++
T Consensus 84 i~~v~q~~~~~~~~tv~e~l~~~~~~~---------------~~---------------------~~~~~~~~~~~~~~~ 127 (506)
T PRK13549 84 IAIIHQELALVKELSVLENIFLGNEIT---------------PG---------------------GIMDYDAMYLRAQKL 127 (506)
T ss_pred eEEEEeccccCCCCcHHHHhhhccccc---------------cc---------------------CCcCHHHHHHHHHHH
Confidence 999999998878899999985321000 00 000111223456778
Q ss_pred chhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHH
Q 006442 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (645)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l 319 (645)
++.+|+. +..++++.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+ +.|+|||+||||++++
T Consensus 128 l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~ 206 (506)
T PRK13549 128 LAQLKLD-INPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEV 206 (506)
T ss_pred HHHcCCC-CCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHH
Confidence 8899995 57789999999999999999999999999999999999999999999988774 3588999999999999
Q ss_pred HhhcCeEEEEcCceeEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhh
Q 006442 320 DQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEE 399 (645)
Q Consensus 320 ~~~~d~i~~l~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~rl~~~~ 399 (645)
..+||+|+++++|++. +.|+..++... ..+..+... .
T Consensus 207 ~~~~d~v~~l~~G~i~-~~~~~~~~~~~-----------------------~~~~~~~~~-~------------------ 243 (506)
T PRK13549 207 KAISDTICVIRDGRHI-GTRPAAGMTED-----------------------DIITMMVGR-E------------------ 243 (506)
T ss_pred HHhcCEEEEEECCEEe-eecccccCCHH-----------------------HHHHHhhCc-C------------------
Confidence 9999999999999874 44443322100 000000000 0
Q ss_pred hhcccccccceEEeccC-CCCCCCcEEEEEeeeeeeC---CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 400 QIEKPFQRKQMKIRFPE-RGRSGRSVVTIKNLEFGYE---DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 400 ~~~~~~~~~~~~~~~p~-~~~~~~~~i~~~~v~~~y~---~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
.... +|. ....++++|+++|+++.|+ ++.+|+++||+|++||+++|+|+||||||||+++|+|+++
T Consensus 244 -~~~~---------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 313 (506)
T PRK13549 244 -LTAL---------YPREPHTIGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP 313 (506)
T ss_pred -cccc---------ccccccCCCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC
Confidence 0000 000 0112456899999999994 4579999999999999999999999999999999999998
Q ss_pred -CCeeEEEECceecc-----------cchhccchh-hcCCCCCCHHHHHHhhhc---------cc--cHHHHHHHHhhcC
Q 006442 476 -PRGGEVLLGEHNVL-----------PNYFEQNQA-EALDLDKTVLETVAEAAE---------DW--RIDDIKGLLGRCN 531 (645)
Q Consensus 476 -p~~G~i~~~g~~~~-----------~~~~~q~~~-~~l~~~~tv~e~v~~~~~---------~~--~~~~~~~~L~~~~ 531 (645)
|++|+|.++|.++. .+|++|+.. ..+.+..|+.+|+..... .. ..+.+.++++.++
T Consensus 314 ~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 393 (506)
T PRK13549 314 GRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLK 393 (506)
T ss_pred CCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcC
Confidence 59999999987652 245555532 235567899999975320 00 1235778999999
Q ss_pred CChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCC
Q 006442 532 FKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVN 608 (645)
Q Consensus 532 l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d 608 (645)
+..+..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|.++ +.|||+||||++++.++||
T Consensus 394 l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d 473 (506)
T PRK13549 394 VKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSD 473 (506)
T ss_pred ccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCC
Confidence 9534678999999999999999999999999999999999999999999999988754 5699999999999999999
Q ss_pred EEEEEeCCeEEeeCCChhHH
Q 006442 609 RVVEVKGSNLQDYAGDYNQV 628 (645)
Q Consensus 609 ~v~~l~~g~i~~~~~~~~~~ 628 (645)
|+++|++|++.. .++.+++
T Consensus 474 ~v~~l~~G~i~~-~~~~~~~ 492 (506)
T PRK13549 474 RVLVMHEGKLKG-DLINHNL 492 (506)
T ss_pred EEEEEECCEEEE-EeccccC
Confidence 999999999974 4555554
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-81 Score=699.75 Aligned_cols=442 Identities=20% Similarity=0.340 Sum_probs=350.9
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----------ceEE
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-----------~~i~ 164 (645)
++|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..|+
T Consensus 4 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 83 (510)
T PRK09700 4 PYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIG 83 (510)
T ss_pred ceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeE
Confidence 46999999999998889999999999999999999999999999999999999999999987632 2599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
|++|++.+++..||+||+......... .... ...+......++.++++
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~-----------~~~~---------------------~~~~~~~~~~~~~~~l~ 131 (510)
T PRK09700 84 IIYQELSVIDELTVLENLYIGRHLTKK-----------VCGV---------------------NIIDWREMRVRAAMMLL 131 (510)
T ss_pred EEeecccccCCCcHHHHhhhccccccc-----------cccc---------------------cccCHHHHHHHHHHHHH
Confidence 999999887888999998532100000 0000 00011123345678889
Q ss_pred hcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHh
Q 006442 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~ 321 (645)
.+|+. +..++++.+|||||||||+|||||+.+|+||||||||+|||+.++.++.++|+ +.|+|||+||||++++..
T Consensus 132 ~~gl~-~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~ 210 (510)
T PRK09700 132 RVGLK-VDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRR 210 (510)
T ss_pred HcCCC-CCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 99996 56789999999999999999999999999999999999999999999988774 358999999999999999
Q ss_pred hcCeEEEEcCceeEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhh
Q 006442 322 LCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQI 401 (645)
Q Consensus 322 ~~d~i~~l~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~rl~~~~~~ 401 (645)
+||+++++++|++ .+.|+++++.... .+..+... .. . ...
T Consensus 211 ~~d~v~~l~~G~i-~~~g~~~~~~~~~-----------------------~~~~~~~~-~~----------~-----~~~ 250 (510)
T PRK09700 211 ICDRYTVMKDGSS-VCSGMVSDVSNDD-----------------------IVRLMVGR-EL----------Q-----NRF 250 (510)
T ss_pred hCCEEEEEECCEE-eeecchhhCCHHH-----------------------HHHHhcCC-Cc----------c-----ccc
Confidence 9999999999998 4667655432110 00011000 00 0 000
Q ss_pred cccccccceEEeccC-CCCCCCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeE
Q 006442 402 EKPFQRKQMKIRFPE-RGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480 (645)
Q Consensus 402 ~~~~~~~~~~~~~p~-~~~~~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~ 480 (645)
... .+. ....++++|+++|+++.|+ .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+
T Consensus 251 ~~~---------~~~~~~~~~~~~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~ 319 (510)
T PRK09700 251 NAM---------KENVSNLAHETVFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGE 319 (510)
T ss_pred ccc---------ccccccCCCCcEEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCe
Confidence 000 000 1112456899999999874 4899999999999999999999999999999999999999999
Q ss_pred EEECceecc-----------cchhccchh-hcCCCCCCHHHHHHhhhcc---------------ccHHHHHHHHhhcCCC
Q 006442 481 VLLGEHNVL-----------PNYFEQNQA-EALDLDKTVLETVAEAAED---------------WRIDDIKGLLGRCNFK 533 (645)
Q Consensus 481 i~~~g~~~~-----------~~~~~q~~~-~~l~~~~tv~e~v~~~~~~---------------~~~~~~~~~L~~~~l~ 533 (645)
|.++|.++. .+|++|... ..+.+..|+.+|+...... .....+.++|+.+++.
T Consensus 320 I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 399 (510)
T PRK09700 320 IRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK 399 (510)
T ss_pred EEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCC
Confidence 999997652 245565421 3466778999998753210 0113467889999995
Q ss_pred hhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEE
Q 006442 534 ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRV 610 (645)
Q Consensus 534 ~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v 610 (645)
.+..++++.+|||||||||+|||||+.+|+||||||||++||+.+++.+.+.|+++ +.|||+||||++++..+|||+
T Consensus 400 ~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i 479 (510)
T PRK09700 400 CHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRI 479 (510)
T ss_pred CCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEE
Confidence 35679999999999999999999999999999999999999999999999999764 569999999999999999999
Q ss_pred EEEeCCeEEee
Q 006442 611 VEVKGSNLQDY 621 (645)
Q Consensus 611 ~~l~~g~i~~~ 621 (645)
++|++|++...
T Consensus 480 ~~l~~G~i~~~ 490 (510)
T PRK09700 480 AVFCEGRLTQI 490 (510)
T ss_pred EEEECCEEEEE
Confidence 99999999754
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-80 Score=694.77 Aligned_cols=431 Identities=27% Similarity=0.424 Sum_probs=346.6
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCC--CCCccEEEEcC-----------------
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKAK----------------- 158 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~--~p~~G~I~~~~----------------- 158 (645)
|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|++ +|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~ 80 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE 80 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccc
Confidence 57899999998888999999999999999999999999999999999997 79999998851
Q ss_pred ------C--------------------CceEEEEecc-CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhH
Q 006442 159 ------S--------------------NMKIAFLSQE-FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD 211 (645)
Q Consensus 159 ------~--------------------~~~i~~v~Q~-~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (645)
. ...++|++|+ +.+++..|+++|+...+..
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~----------------------- 137 (520)
T TIGR03269 81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEE----------------------- 137 (520)
T ss_pred ccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHH-----------------------
Confidence 0 1248999997 5666778999998532110
Q ss_pred HHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 006442 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291 (645)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD 291 (645)
...+..+..+++.++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 138 ----------------~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD 200 (520)
T TIGR03269 138 ----------------IGYEGKEAVGRAVDLIEMVQLS-HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLD 200 (520)
T ss_pred ----------------cCCCHHHHHHHHHHHHHHcCCh-hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCC
Confidence 0011122345677889999996 56788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcCeEEEEcCceeEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006442 292 LDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIE 367 (645)
Q Consensus 292 ~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (645)
+.+++++.++|+ +.|+|||+||||++++.++||+|++|++|++. +.|++.++.....
T Consensus 201 ~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~~~~------------------ 261 (520)
T TIGR03269 201 PQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIK-EEGTPDEVVAVFM------------------ 261 (520)
T ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEe-eecCHHHHHHHHH------------------
Confidence 999999977663 35899999999999999999999999999874 4677655422100
Q ss_pred HHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhhcccccccceEEeccCCCCCCCcEEEEEeeeeeeC-----Ceeceee
Q 006442 368 QTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE-----DRLLFNR 442 (645)
Q Consensus 368 ~~~~~~~~l~~~~~~~~~~~~~~~l~rl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~-----~~~~l~~ 442 (645)
..+ ... .++ .....++++|+++|++++|+ .+.+|++
T Consensus 262 ------~~~----------------~~~------~~~-----------~~~~~~~~~l~~~~l~~~~~~~~~~~~~il~~ 302 (520)
T TIGR03269 262 ------EGV----------------SEV------EKE-----------CEVEVGEPIIKVRNVSKRYISVDRGVVKAVDN 302 (520)
T ss_pred ------hhc----------------hhh------ccc-----------cccCCCCceEEEeccEEEeccCCCCCceEEee
Confidence 000 000 000 00012356899999999995 2579999
Q ss_pred eeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEEC-cee---c-------------ccchhccchhhcCCCCC
Q 006442 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG-EHN---V-------------LPNYFEQNQAEALDLDK 505 (645)
Q Consensus 443 vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~-g~~---~-------------~~~~~~q~~~~~l~~~~ 505 (645)
+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |.+ + ..+|++|+ ..+.+..
T Consensus 303 is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~--~~l~~~~ 380 (520)
T TIGR03269 303 VSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQE--YDLYPHR 380 (520)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccC--cccCCCC
Confidence 999999999999999999999999999999999999999995 421 1 12455554 3456778
Q ss_pred CHHHHHHhhhc--c-c--cHHHHHHHHhhcCCCh----hhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCH
Q 006442 506 TVLETVAEAAE--D-W--RIDDIKGLLGRCNFKA----DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576 (645)
Q Consensus 506 tv~e~v~~~~~--~-~--~~~~~~~~L~~~~l~~----~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~ 576 (645)
|+.+|+..... . . ...++.++|+.+++.. +..++++.+|||||||||+|||||+.+|++|||||||++||+
T Consensus 381 tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~ 460 (520)
T TIGR03269 381 TVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDP 460 (520)
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 99999975321 0 1 1235678899999953 256899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh----cCceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 577 PSKEMLEEAISE----YKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 577 ~s~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
.+++.+.+.|++ ++.|||+||||++++.++|||+++|++|+++. .|..+++.
T Consensus 461 ~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 516 (520)
T TIGR03269 461 ITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVK-IGDPEEIV 516 (520)
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 999999999964 35699999999999999999999999999975 46666544
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-80 Score=693.93 Aligned_cols=441 Identities=25% Similarity=0.358 Sum_probs=350.2
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----------ceE
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKI 163 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-----------~~i 163 (645)
.++|+++|++|+|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..+
T Consensus 9 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 9 PPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred CceEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 447999999999998889999999999999999999999999999999999999999999998632 259
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhc
Q 006442 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (645)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (645)
+|++|++.+++..||.||+...... ....++++.+++
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~-------------------------------------------~~~~~~~~~~~l 125 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPK-------------------------------------------RQASMQKMKQLL 125 (510)
T ss_pred EEEeccCccCCCCcHHHHhhccccc-------------------------------------------chHHHHHHHHHH
Confidence 9999999888889999998532100 001234456778
Q ss_pred hhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHH
Q 006442 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (645)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~ 320 (645)
+.+|+. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.+++++.++|+ +.|+|||++|||++++.
T Consensus 126 ~~~~l~-~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~ 204 (510)
T PRK15439 126 AALGCQ-LDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIR 204 (510)
T ss_pred HHcCCC-ccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 888986 56789999999999999999999999999999999999999999999998874 35899999999999999
Q ss_pred hhcCeEEEEcCceeEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhh
Q 006442 321 QLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQ 400 (645)
Q Consensus 321 ~~~d~i~~l~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~rl~~~~~ 400 (645)
.+||+|+++++|++. +.|+++++..... ++.+....... .+...
T Consensus 205 ~~~d~i~~l~~G~i~-~~g~~~~~~~~~~-----------------------~~~~~~~~~~~-------~~~~~----- 248 (510)
T PRK15439 205 QLADRISVMRDGTIA-LSGKTADLSTDDI-----------------------IQAITPAAREK-------SLSAS----- 248 (510)
T ss_pred HhCCEEEEEECCEEE-EecChHHcCHHHH-----------------------HHHHhCccccc-------ccccc-----
Confidence 999999999999984 5677665432110 00000000000 00000
Q ss_pred hcccccccceEEeccC---CCCCCCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 006442 401 IEKPFQRKQMKIRFPE---RGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477 (645)
Q Consensus 401 ~~~~~~~~~~~~~~p~---~~~~~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~ 477 (645)
... ...+|. ....++++|+++|++. .+|+++||+|++|+++||+||||||||||+++|+|+++|+
T Consensus 249 -~~~------~~~~~~~~~~~~~~~~~l~~~~l~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~ 316 (510)
T PRK15439 249 -QKL------WLELPGNRRQQAAGAPVLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR 316 (510)
T ss_pred -ccc------cccccccccccCCCCceEEEeCCCC-----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence 000 000111 1113456899999994 2699999999999999999999999999999999999999
Q ss_pred eeEEEECceecc-----------cchhccchh-hcCCCCCCHHHHHHhh----hcc---c--cHHHHHHHHhhcCCChhh
Q 006442 478 GGEVLLGEHNVL-----------PNYFEQNQA-EALDLDKTVLETVAEA----AED---W--RIDDIKGLLGRCNFKADM 536 (645)
Q Consensus 478 ~G~i~~~g~~~~-----------~~~~~q~~~-~~l~~~~tv~e~v~~~----~~~---~--~~~~~~~~L~~~~l~~~~ 536 (645)
+|+|.++|.++. .+|++|... ..+++..|+.+|+... ... . ..+.+.++|+.+++....
T Consensus 317 ~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 396 (510)
T PRK15439 317 GGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNH 396 (510)
T ss_pred CcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCC
Confidence 999999997652 245665431 3466678999998532 000 1 123467889999995356
Q ss_pred hccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEE
Q 006442 537 LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEV 613 (645)
Q Consensus 537 ~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l 613 (645)
.++++.+|||||||||+|||||+.+|+||||||||+|||+.+++.+.+.|+++ +.|||+||||++++.++|||+++|
T Consensus 397 ~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l 476 (510)
T PRK15439 397 AEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVM 476 (510)
T ss_pred ccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 79999999999999999999999999999999999999999999999998864 569999999999999999999999
Q ss_pred eCCeEEeeCCChhHH
Q 006442 614 KGSNLQDYAGDYNQV 628 (645)
Q Consensus 614 ~~g~i~~~~~~~~~~ 628 (645)
++|+++. .+..+++
T Consensus 477 ~~G~i~~-~~~~~~~ 490 (510)
T PRK15439 477 HQGEISG-ALTGAAI 490 (510)
T ss_pred ECCEEEE-EEccccC
Confidence 9999985 3444443
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-80 Score=696.58 Aligned_cols=445 Identities=20% Similarity=0.359 Sum_probs=349.7
Q ss_pred ccEEEEeEEEEeCC----eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEEcCCC------
Q 006442 96 SGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN------ 160 (645)
Q Consensus 96 ~~i~i~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p-----~~G~I~~~~~~------ 160 (645)
++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 36999999999963 5799999999999999999999999999999999999986 79999987632
Q ss_pred --------ceEEEEeccCc--cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhC
Q 006442 161 --------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230 (645)
Q Consensus 161 --------~~i~~v~Q~~~--~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (645)
.+|||++|++. +.+..|+.+|+...... . ..+
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~---------------~-----------------------~~~ 125 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSL---------------H-----------------------RGM 125 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHH---------------h-----------------------cCC
Confidence 25999999975 44556888886421100 0 001
Q ss_pred ChhcHHHHHHhhchhcCCCc--ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----
Q 006442 231 NLDTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---- 304 (645)
Q Consensus 231 ~~~~~~~~i~~ll~~lgl~~--~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---- 304 (645)
......+++.++++.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++
T Consensus 126 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~ 205 (529)
T PRK15134 126 RREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQE 205 (529)
T ss_pred CHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHh
Confidence 11233456778889999963 146889999999999999999999999999999999999999999999988754
Q ss_pred CCCeEEEEecCHHHHHhhcCeEEEEcCceeEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhh
Q 006442 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGR 384 (645)
Q Consensus 305 ~g~tvIivsHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 384 (645)
.|+|||+||||++++..+||+|++|++|++. +.|...++..... ..+ ......
T Consensus 206 ~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~-~~g~~~~~~~~~~-------~~~---------~~~~~~---------- 258 (529)
T PRK15134 206 LNMGLLFITHNLSIVRKLADRVAVMQNGRCV-EQNRAATLFSAPT-------HPY---------TQKLLN---------- 258 (529)
T ss_pred cCCeEEEEcCcHHHHHHhcCEEEEEECCEEE-EeCCHHHHhhCCC-------CHH---------HHHHHH----------
Confidence 4899999999999999999999999999974 4454433221000 000 000000
Q ss_pred HHHHHHHHHHHHHhhhhcccccccceEEeccCCCCCCCcEEEEEeeeeeeC-----------CeeceeeeeEEEecCcEE
Q 006442 385 ASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE-----------DRLLFNRANLTIERGEKT 453 (645)
Q Consensus 385 ~~~~~~~l~rl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~-----------~~~~l~~vsl~i~~Ge~v 453 (645)
. .+...+ . +. ...+.++|+++|+++.|+ ++.+|+++||+|++||++
T Consensus 259 -------------~----~~~~~~---~--~~-~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~ 315 (529)
T PRK15134 259 -------------S----EPSGDP---V--PL-PEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETL 315 (529)
T ss_pred -------------h----Cccccc---c--cc-CCCCCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEE
Confidence 0 000000 0 00 112456899999999995 357999999999999999
Q ss_pred EEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-------------cchhccchhhcCCCCCCHHHHHHhhhcc---
Q 006442 454 AIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------PNYFEQNQAEALDLDKTVLETVAEAAED--- 517 (645)
Q Consensus 454 ~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------------~~~~~q~~~~~l~~~~tv~e~v~~~~~~--- 517 (645)
+|+||||||||||+++|+|+++ ++|+|+++|.++. .+|++|+....+.+..|+.+|+......
T Consensus 316 ~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~ 394 (529)
T PRK15134 316 GLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP 394 (529)
T ss_pred EEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc
Confidence 9999999999999999999985 8999999997642 2455665422466678999999764210
Q ss_pred -c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---
Q 006442 518 -W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--- 589 (645)
Q Consensus 518 -~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--- 589 (645)
. ....+.++|+.+++..+..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|+++
T Consensus 395 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 474 (529)
T PRK15134 395 TLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQK 474 (529)
T ss_pred cCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHh
Confidence 1 12457789999999645678999999999999999999999999999999999999999999999999753
Q ss_pred -CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 590 -KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 590 -~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
+.|||+||||++++..+|||+++|++|+++. .|+.+++++
T Consensus 475 ~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~~ 515 (529)
T PRK15134 475 HQLAYLFISHDLHVVRALCHQVIVLRQGEVVE-QGDCERVFA 515 (529)
T ss_pred hCCEEEEEeCCHHHHHHhcCeEEEEECCEEEE-EcCHHHHhc
Confidence 5699999999999999999999999999975 466666543
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-80 Score=694.31 Aligned_cols=432 Identities=24% Similarity=0.379 Sum_probs=344.1
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----------ceEE
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-----------~~i~ 164 (645)
++|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 82 (501)
T PRK10762 3 ALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG 82 (501)
T ss_pred ceEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 36999999999998889999999999999999999999999999999999999999999998632 2599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
|++|++.+++..||+||+....... ... ...+....++++.++++
T Consensus 83 ~v~q~~~~~~~~tv~e~l~~~~~~~-----------~~~------------------------~~~~~~~~~~~~~~~l~ 127 (501)
T PRK10762 83 IIHQELNLIPQLTIAENIFLGREFV-----------NRF------------------------GRIDWKKMYAEADKLLA 127 (501)
T ss_pred EEEcchhccCCCcHHHHhhhccccc-----------ccc------------------------CccCHHHHHHHHHHHHH
Confidence 9999998888899999985321000 000 00011122345677888
Q ss_pred hcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHh
Q 006442 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~ 321 (645)
.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|+ +.|.|||+||||++++..
T Consensus 128 ~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~ 206 (501)
T PRK10762 128 RLNLR-FSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFE 206 (501)
T ss_pred HcCCC-CCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99996 56788999999999999999999999999999999999999999999987764 358899999999999999
Q ss_pred hcCeEEEEcCceeEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhh
Q 006442 322 LCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQI 401 (645)
Q Consensus 322 ~~d~i~~l~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~rl~~~~~~ 401 (645)
+||+|+++++|++. ..|...+.... ......... + .
T Consensus 207 ~~d~i~~l~~G~i~-~~~~~~~~~~~-----------------------~~~~~~~~~--------------~------~ 242 (501)
T PRK10762 207 ICDDVTVFRDGQFI-AEREVADLTED-----------------------SLIEMMVGR--------------K------L 242 (501)
T ss_pred hCCEEEEEeCCEEE-EecCcCcCCHH-----------------------HHHHHhcCC--------------C------c
Confidence 99999999999874 33432221100 000000000 0 0
Q ss_pred cccccccceEEeccCCCCCCCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEE
Q 006442 402 EKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (645)
Q Consensus 402 ~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i 481 (645)
..+. + ..+ ..+++++|+++|+++ .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|
T Consensus 243 ~~~~--~----~~~--~~~~~~~l~~~~l~~-----~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I 309 (501)
T PRK10762 243 EDQY--P----RLD--KAPGEVRLKVDNLSG-----PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYV 309 (501)
T ss_pred cccc--c----ccc--cCCCCcEEEEeCccc-----CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEE
Confidence 0000 0 000 112346899999985 36999999999999999999999999999999999999999999
Q ss_pred EECceecc-----------cchhccchh-hcCCCCCCHHHHHHhhhc----c--------ccHHHHHHHHhhcCCChhhh
Q 006442 482 LLGEHNVL-----------PNYFEQNQA-EALDLDKTVLETVAEAAE----D--------WRIDDIKGLLGRCNFKADML 537 (645)
Q Consensus 482 ~~~g~~~~-----------~~~~~q~~~-~~l~~~~tv~e~v~~~~~----~--------~~~~~~~~~L~~~~l~~~~~ 537 (645)
.++|.++. .+|++|+.. ..+.+..|+.+|+..... . ...+.+.++|+.+++..+..
T Consensus 310 ~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 389 (501)
T PRK10762 310 TLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSM 389 (501)
T ss_pred EECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCc
Confidence 99997652 345666532 245677899999875311 0 11235778999999953457
Q ss_pred ccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEe
Q 006442 538 DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVK 614 (645)
Q Consensus 538 ~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~ 614 (645)
++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|+++ +.|||+||||++++.++||++++|+
T Consensus 390 ~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~ 469 (501)
T PRK10762 390 EQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMH 469 (501)
T ss_pred cCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEE
Confidence 8999999999999999999999999999999999999999999999999875 4599999999999999999999999
Q ss_pred CCeEEe
Q 006442 615 GSNLQD 620 (645)
Q Consensus 615 ~g~i~~ 620 (645)
+|++..
T Consensus 470 ~G~i~~ 475 (501)
T PRK10762 470 EGRISG 475 (501)
T ss_pred CCEEEE
Confidence 999974
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-80 Score=693.25 Aligned_cols=436 Identities=24% Similarity=0.340 Sum_probs=344.2
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCC--CccEEEEcCCC-----------ceEE
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP--DSGNVIKAKSN-----------MKIA 164 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p--~~G~I~~~~~~-----------~~i~ 164 (645)
|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.. ..|+
T Consensus 2 l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (500)
T TIGR02633 2 LEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIV 81 (500)
T ss_pred EEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEE
Confidence 7899999999988899999999999999999999999999999999999987 79999997632 3599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
|++|++.+++..||.||+....... ... ..........++.++++
T Consensus 82 ~v~q~~~~~~~~tv~~~l~~~~~~~-------------~~~----------------------~~~~~~~~~~~~~~~l~ 126 (500)
T TIGR02633 82 IIHQELTLVPELSVAENIFLGNEIT-------------LPG----------------------GRMAYNAMYLRAKNLLR 126 (500)
T ss_pred EEeeccccCCCCcHHHHHHhhcccc-------------ccc----------------------cccCHHHHHHHHHHHHH
Confidence 9999998878899999985321000 000 00001122345677888
Q ss_pred hcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHh
Q 006442 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~ 321 (645)
.+|+.....++++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|+ +.|+|||+||||++++..
T Consensus 127 ~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~ 206 (500)
T TIGR02633 127 ELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKA 206 (500)
T ss_pred HcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHH
Confidence 89986433467799999999999999999999999999999999999999999988864 468999999999999999
Q ss_pred hcCeEEEEcCceeEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhh
Q 006442 322 LCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQI 401 (645)
Q Consensus 322 ~~d~i~~l~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~rl~~~~~~ 401 (645)
+||+|+++++|++. +.+...++... ..+..+... . .
T Consensus 207 ~~d~i~~l~~G~i~-~~~~~~~~~~~-----------------------~~~~~~~~~-------------------~-~ 242 (500)
T TIGR02633 207 VCDTICVIRDGQHV-ATKDMSTMSED-----------------------DIITMMVGR-------------------E-I 242 (500)
T ss_pred hCCEEEEEeCCeEe-eecCcccCCHH-----------------------HHHHHHhCc-------------------c-c
Confidence 99999999999874 33332211000 000000000 0 0
Q ss_pred cccccccceEEeccC-CCCCCCcEEEEEeeeeee---CCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-
Q 006442 402 EKPFQRKQMKIRFPE-RGRSGRSVVTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP- 476 (645)
Q Consensus 402 ~~~~~~~~~~~~~p~-~~~~~~~~i~~~~v~~~y---~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p- 476 (645)
... .|. ....++.+|+++|+++.| +++.+|+++||+|++||+++|+||||||||||+++|+|+++|
T Consensus 243 ~~~---------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~ 313 (500)
T TIGR02633 243 TSL---------YPHEPHEIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGK 313 (500)
T ss_pred ccc---------ccccccCCCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCC
Confidence 000 000 011235689999999999 345799999999999999999999999999999999999985
Q ss_pred CeeEEEECceecc-----------cchhccchh-hcCCCCCCHHHHHHhhhc----c---c----cHHHHHHHHhhcCCC
Q 006442 477 RGGEVLLGEHNVL-----------PNYFEQNQA-EALDLDKTVLETVAEAAE----D---W----RIDDIKGLLGRCNFK 533 (645)
Q Consensus 477 ~~G~i~~~g~~~~-----------~~~~~q~~~-~~l~~~~tv~e~v~~~~~----~---~----~~~~~~~~L~~~~l~ 533 (645)
++|+|.++|.++. .+|++|... ..+.+..|+.+|+..... . . ...++.++|+++++.
T Consensus 314 ~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 393 (500)
T TIGR02633 314 FEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVK 393 (500)
T ss_pred CCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCcc
Confidence 8999999997652 245555532 246677899999875310 0 0 123577899999995
Q ss_pred hhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEE
Q 006442 534 ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRV 610 (645)
Q Consensus 534 ~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v 610 (645)
....++++..|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|.++ +.|||+||||++++.++|||+
T Consensus 394 ~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v 473 (500)
T TIGR02633 394 TASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRV 473 (500)
T ss_pred CCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEE
Confidence 34578999999999999999999999999999999999999999999999888754 569999999999999999999
Q ss_pred EEEeCCeEEee
Q 006442 611 VEVKGSNLQDY 621 (645)
Q Consensus 611 ~~l~~g~i~~~ 621 (645)
++|++|++...
T Consensus 474 ~~l~~G~i~~~ 484 (500)
T TIGR02633 474 LVIGEGKLKGD 484 (500)
T ss_pred EEEECCEEEEE
Confidence 99999998753
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-80 Score=692.03 Aligned_cols=441 Identities=22% Similarity=0.338 Sum_probs=347.4
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----------ceEE
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-----------~~i~ 164 (645)
++|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|+
T Consensus 3 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 82 (501)
T PRK11288 3 PYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA 82 (501)
T ss_pred ceEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence 36999999999998889999999999999999999999999999999999999999999987632 2599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
|++|++.+++..||.+|+........ . ...+.+...+++.++++
T Consensus 83 ~v~q~~~~~~~~tv~~~l~~~~~~~~------------~------------------------~~~~~~~~~~~~~~~l~ 126 (501)
T PRK11288 83 IIYQELHLVPEMTVAENLYLGQLPHK------------G------------------------GIVNRRLLNYEAREQLE 126 (501)
T ss_pred EEEechhccCCCCHHHHHHhcccccc------------c------------------------CCCCHHHHHHHHHHHHH
Confidence 99999988888999999863210000 0 00011223445677888
Q ss_pred hcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHh
Q 006442 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~ 321 (645)
.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|+ +.|+|||+||||++++..
T Consensus 127 ~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~ 205 (501)
T PRK11288 127 HLGVD-IDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFA 205 (501)
T ss_pred HcCCC-CCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 99996 56788899999999999999999999999999999999999999999998875 358999999999999999
Q ss_pred hcCeEEEEcCceeEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhh
Q 006442 322 LCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQI 401 (645)
Q Consensus 322 ~~d~i~~l~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~rl~~~~~~ 401 (645)
+||+|+++++|++.. .+ +.+..... . .....+.... .
T Consensus 206 ~~d~i~~l~~G~i~~-~~--~~~~~~~~--------------~------~~~~~~~~~~--------------------~ 242 (501)
T PRK11288 206 LCDAITVFKDGRYVA-TF--DDMAQVDR--------------D------QLVQAMVGRE--------------------I 242 (501)
T ss_pred hCCEEEEEECCEEEe-ec--CccccCCH--------------H------HHHHHhcCCC--------------------c
Confidence 999999999998742 22 11100000 0 0000000000 0
Q ss_pred cccccccceEEeccCCCCCCCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEE
Q 006442 402 EKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (645)
Q Consensus 402 ~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i 481 (645)
... ...+ +...++..++++|+++. .+++++||+|++||+++|+||||||||||+++|+|+++|++|+|
T Consensus 243 ~~~-------~~~~-~~~~~~~~l~~~~~~~~----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i 310 (501)
T PRK11288 243 GDI-------YGYR-PRPLGEVRLRLDGLKGP----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQV 310 (501)
T ss_pred ccc-------cccc-ccCCCCcEEEEeccccC----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceE
Confidence 000 0000 01123457999999843 58999999999999999999999999999999999999999999
Q ss_pred EECceecc-----------cchhccchh-hcCCCCCCHHHHHHhhhcc------------ccHHHHHHHHhhcCCChhhh
Q 006442 482 LLGEHNVL-----------PNYFEQNQA-EALDLDKTVLETVAEAAED------------WRIDDIKGLLGRCNFKADML 537 (645)
Q Consensus 482 ~~~g~~~~-----------~~~~~q~~~-~~l~~~~tv~e~v~~~~~~------------~~~~~~~~~L~~~~l~~~~~ 537 (645)
.++|.++. .+|++|+.. ..+.+..|+.+|+...... ...+.+.++|+.+++..+..
T Consensus 311 ~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 390 (501)
T PRK11288 311 YLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSR 390 (501)
T ss_pred EECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCc
Confidence 99987653 235555432 2356778999998653210 11235778999999954567
Q ss_pred ccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEe
Q 006442 538 DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVK 614 (645)
Q Consensus 538 ~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~ 614 (645)
++++.+|||||||||+|||||+.+|+||||||||+|||+.+++.+.++|.++ +.|||+||||++++.++||++++|+
T Consensus 391 ~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~ 470 (501)
T PRK11288 391 EQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMR 470 (501)
T ss_pred cCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999998654 6799999999999999999999999
Q ss_pred CCeEEeeCCChhHHH
Q 006442 615 GSNLQDYAGDYNQVQ 629 (645)
Q Consensus 615 ~g~i~~~~~~~~~~~ 629 (645)
+|+++. .+..+++.
T Consensus 471 ~g~i~~-~~~~~~~~ 484 (501)
T PRK11288 471 EGRIAG-ELAREQAT 484 (501)
T ss_pred CCEEEE-EEccccCC
Confidence 999875 45555544
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-79 Score=682.01 Aligned_cols=430 Identities=20% Similarity=0.325 Sum_probs=337.8
Q ss_pred EEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----------ceEEEEec
Q 006442 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFLSQ 168 (645)
Q Consensus 100 i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-----------~~i~~v~Q 168 (645)
++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q 80 (491)
T PRK10982 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQ 80 (491)
T ss_pred CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEec
Confidence 3689999998889999999999999999999999999999999999999999999998742 25999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCC
Q 006442 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (645)
Q Consensus 169 ~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (645)
++.+++..||.||+....... ... ..+.....+++.++++.+|+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~--------------~~~----------------------~~~~~~~~~~~~~~l~~~~l 124 (491)
T PRK10982 81 ELNLVLQRSVMDNMWLGRYPT--------------KGM----------------------FVDQDKMYRDTKAIFDELDI 124 (491)
T ss_pred ccccccCCCHHHHhhcccccc--------------ccc----------------------ccCHHHHHHHHHHHHHHcCC
Confidence 998878899999985321000 000 00011123456677888898
Q ss_pred CcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCe
Q 006442 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTK 325 (645)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d~ 325 (645)
. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.+++++.++|+ +.|.|||++|||++++..+||+
T Consensus 125 ~-~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~ 203 (491)
T PRK10982 125 D-IDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDE 203 (491)
T ss_pred C-CCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCE
Confidence 6 56788899999999999999999999999999999999999999999988774 3589999999999999999999
Q ss_pred EEEEcCceeEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhhcccc
Q 006442 326 IVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPF 405 (645)
Q Consensus 326 i~~l~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~rl~~~~~~~~~~ 405 (645)
|+++++|++. ..|+..+.... .....+... . ....
T Consensus 204 i~~l~~G~i~-~~~~~~~~~~~-----------------------~~~~~~~~~-------------------~-~~~~- 238 (491)
T PRK10982 204 ITILRDGQWI-ATQPLAGLTMD-----------------------KIIAMMVGR-------------------S-LTQR- 238 (491)
T ss_pred EEEEECCEEE-eecChhhCCHH-----------------------HHHHHHhCC-------------------C-cccc-
Confidence 9999999874 33432221000 000000000 0 0000
Q ss_pred cccceEEeccC-CCCCCCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEEC
Q 006442 406 QRKQMKIRFPE-RGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484 (645)
Q Consensus 406 ~~~~~~~~~p~-~~~~~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~ 484 (645)
+|. ...+++++|+++|+++.| +.+|+++||+|++||++||+|+||||||||+++|+|+.+|++|+|.++
T Consensus 239 --------~~~~~~~~~~~~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 308 (491)
T PRK10982 239 --------FPDKENKPGEVILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLH 308 (491)
T ss_pred --------cccccCCCCCcEEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEEC
Confidence 000 011245689999999985 469999999999999999999999999999999999999999999999
Q ss_pred ceecc-----------cchhccchh-hcCCCCCCHHHH-----HHhhhcc---c----cHHHHHHHHhhcCCChhhhccC
Q 006442 485 EHNVL-----------PNYFEQNQA-EALDLDKTVLET-----VAEAAED---W----RIDDIKGLLGRCNFKADMLDRK 540 (645)
Q Consensus 485 g~~~~-----------~~~~~q~~~-~~l~~~~tv~e~-----v~~~~~~---~----~~~~~~~~L~~~~l~~~~~~~~ 540 (645)
|.++. .+|++|... ..++.+.++.+| +...... . ....+..+++.+++..+..+++
T Consensus 309 g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 388 (491)
T PRK10982 309 GKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ 388 (491)
T ss_pred CEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccc
Confidence 97653 234555432 234456666655 3221110 1 1234678899999853457999
Q ss_pred cCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHh---cCceEEEEecCHHHHHhhCCEEEEEeCCe
Q 006442 541 VSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE---YKGTVITVSHDRYFVKQIVNRVVEVKGSN 617 (645)
Q Consensus 541 ~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~---~~~tvi~vsHd~~~i~~~~d~v~~l~~g~ 617 (645)
+.+|||||||||+||||++.+|+||||||||+|||+.+++.+.+.|.+ .+.|||+||||++++..+|||+++|++|+
T Consensus 389 ~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~ 468 (491)
T PRK10982 389 IGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGL 468 (491)
T ss_pred cccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999998854 46799999999999999999999999999
Q ss_pred EEee
Q 006442 618 LQDY 621 (645)
Q Consensus 618 i~~~ 621 (645)
++..
T Consensus 469 i~~~ 472 (491)
T PRK10982 469 VAGI 472 (491)
T ss_pred EEEE
Confidence 9853
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-79 Score=680.86 Aligned_cols=435 Identities=22% Similarity=0.269 Sum_probs=333.9
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceEEEE
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i~~v 166 (645)
+|+++|++|+|++.++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++.. ..++|+
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~ 82 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDE 82 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhcee
Confidence 5999999999988889999999999999999999999999999999999999999999986532 138999
Q ss_pred eccCccCC--------CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHH
Q 006442 167 SQEFEVSM--------SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (645)
Q Consensus 167 ~Q~~~~~~--------~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (645)
+|++.... ..|+.+++... ...+++
T Consensus 83 ~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~~~ 115 (490)
T PRK10938 83 WQRNNTDMLSPGEDDTGRTTAEIIQDE-----------------------------------------------VKDPAR 115 (490)
T ss_pred ccCcchhhcccchhhccccHHHhcccc-----------------------------------------------hhHHHH
Confidence 99864311 23444443200 011344
Q ss_pred HHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecC
Q 006442 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHD 315 (645)
Q Consensus 239 i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd 315 (645)
+.++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++++.++|++ .|+|||+||||
T Consensus 116 ~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~ 194 (490)
T PRK10938 116 CEQLAQQFGIT-ALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNR 194 (490)
T ss_pred HHHHHHHcCCH-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 56778888986 567899999999999999999999999999999999999999999999988743 48899999999
Q ss_pred HHHHHhhcCeEEEEcCceeEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHH
Q 006442 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERL 395 (645)
Q Consensus 316 ~~~l~~~~d~i~~l~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~rl 395 (645)
++++.++||+++++++|++. +.|+.+++.... .+.++... +++
T Consensus 195 ~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~~~~-----------------------~~~~~~~~-------------~~~ 237 (490)
T PRK10938 195 FDEIPDFVQFAGVLADCTLA-ETGEREEILQQA-----------------------LVAQLAHS-------------EQL 237 (490)
T ss_pred HHHHHhhCCEEEEEECCEEE-EeCCHHHHhcch-----------------------hhhhhhhh-------------hcc
Confidence 99999999999999999984 446544332110 00000000 000
Q ss_pred HHhhhhcccccccceEEeccCCCCCCCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 396 QEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
.. ...+..... ..+.......++|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+.+
T Consensus 238 ~~---~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~ 311 (490)
T PRK10938 238 EG---VQLPEPDEP---SARHALPANEPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP 311 (490)
T ss_pred Cc---cccCccccc---ccccccCCCCceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 00 000000000 000001124568999999999988889999999999999999999999999999999999887
Q ss_pred C-CeeEEEECceecc-----------cchhccchhhcCCCCCCHHHHHHhhhc-------cc---cHHHHHHHHhhcCCC
Q 006442 476 P-RGGEVLLGEHNVL-----------PNYFEQNQAEALDLDKTVLETVAEAAE-------DW---RIDDIKGLLGRCNFK 533 (645)
Q Consensus 476 p-~~G~i~~~g~~~~-----------~~~~~q~~~~~l~~~~tv~e~v~~~~~-------~~---~~~~~~~~L~~~~l~ 533 (645)
| ++|+|+++|.++. .+|+.|+.........++.+++..... .. ....+.++++.+++.
T Consensus 312 ~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 391 (490)
T PRK10938 312 QGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGID 391 (490)
T ss_pred cccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCc
Confidence 6 6999999986431 234454422111123456665543210 01 123577899999996
Q ss_pred hhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---Cc-eEEEEecCHHHHHh-hCC
Q 006442 534 ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KG-TVITVSHDRYFVKQ-IVN 608 (645)
Q Consensus 534 ~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~-tvi~vsHd~~~i~~-~~d 608 (645)
.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.+.|.++ ++ |||+||||++++.+ +||
T Consensus 392 ~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d 471 (490)
T PRK10938 392 KRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITH 471 (490)
T ss_pred hhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhhe
Confidence 33678999999999999999999999999999999999999999999999999865 33 69999999999987 599
Q ss_pred EEEEEeCCeEEeeC
Q 006442 609 RVVEVKGSNLQDYA 622 (645)
Q Consensus 609 ~v~~l~~g~i~~~~ 622 (645)
++++|++|+++.+.
T Consensus 472 ~v~~l~~G~i~~~~ 485 (490)
T PRK10938 472 RLEFVPDGDIYRYV 485 (490)
T ss_pred eEEEecCCceEEee
Confidence 99999999987654
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-77 Score=629.00 Aligned_cols=496 Identities=30% Similarity=0.485 Sum_probs=402.8
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCC
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~ 174 (645)
...|.+.+++..||++.+|.+-++++..|.+|||||+||+|||||||+|+. |.|... -++|+..-..
T Consensus 78 ~~Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f-------~veqE~~g~~ 144 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGF-------HVEQEVRGDD 144 (582)
T ss_pred ccceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCcc-------Cchhheeccc
Confidence 446999999999999999999999999999999999999999999999997 444322 1223321000
Q ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChh-cHHHHHHhhchhcCCCcccc
Q 006442 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD-TLDAKVSKLMPELGFTADDG 253 (645)
Q Consensus 175 ~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~ll~~lgl~~~~~ 253 (645)
..-..+.+. ..... .++ +.+- ..+... ..++...++|..+||+++..
T Consensus 145 t~~~~~~l~----~D~~~-----------------~df----l~~e-------~~l~~~~~l~ei~~~~L~glGFt~emq 192 (582)
T KOG0062|consen 145 TEALQSVLE----SDTER-----------------LDF----LAEE-------KELLAGLTLEEIYDKILAGLGFTPEMQ 192 (582)
T ss_pred hHHHhhhhh----ccHHH-----------------HHH----HHhh-------hhhhccchHHHHHHHHHHhCCCCHHHH
Confidence 000000000 00000 000 0000 001111 23333445899999999999
Q ss_pred cccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcCce
Q 006442 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (645)
Q Consensus 254 ~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~i~~l~~G~ 333 (645)
.+++.+||||||+|++|||||..+|||||||||||+||..++.||.++|+.++.|+|+||||..|++.+|+.|+..++-+
T Consensus 193 ~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~k 272 (582)
T KOG0062|consen 193 LQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLK 272 (582)
T ss_pred hccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-chhhHHHHHHHHHHHHHhhhhcccccccceEE
Q 006442 334 SRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGA-NSGRASSAEKKLERLQEEEQIEKPFQRKQMKI 412 (645)
Q Consensus 334 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~l~rl~~~~~~~~~~~~~~~~~ 412 (645)
+..|.|||++|+..+.+....+.+.|+.+.+..+..+..+++++..+ .+..++++.+.++++ ....++.......+
T Consensus 273 L~~YkGN~~~Fvk~k~E~~~n~qrefe~q~~~R~h~q~fid~FrYna~ra~svqSRIk~L~kl---~~lk~~~~~~~~~~ 349 (582)
T KOG0062|consen 273 LDYYKGNYSQFVKTKPEAKKNQQREFEVQMKYRAHLQVFIDKFRYNAARASSVQSRIKMLGKL---PALKSTLIEVLIGF 349 (582)
T ss_pred hhhhcCcHHHHHHhhHHhhhhhhhhcchHHHHHHHHHHHHHHhccCcccchhHHHHHHHhccC---CCCCccceecccce
Confidence 99999999999999999999999999988888888888888887532 223444444444433 22233333444566
Q ss_pred eccCC-CCCCCcEEEEEeeeeeeCCe--eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc
Q 006442 413 RFPER-GRSGRSVVTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL 489 (645)
Q Consensus 413 ~~p~~-~~~~~~~i~~~~v~~~y~~~--~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~ 489 (645)
.||++ ...+.+.+++.+|+|.|... .++.++++.++.-++++++|+||+||||+++++.+.+.|..|.+.+.+ .++
T Consensus 350 ~fP~~~e~~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-r~r 428 (582)
T KOG0062|consen 350 LFPTEGEVLSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-RLR 428 (582)
T ss_pred ecCCCCCcCCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-cce
Confidence 77874 34578899999999999754 489999999999999999999999999999999999999999998875 357
Q ss_pred cchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeC
Q 006442 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (645)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 569 (645)
.+||.|+.-..+....+..+.++...+-...++++..|+.||+..++..+++..||||||-||++|.+.+.+|++|||||
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDE 508 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDE 508 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecC
Confidence 78999987666655666677766655555778999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHHHhhhhhhh
Q 006442 570 PTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSLWFLTIEVS 639 (645)
Q Consensus 570 Pt~~LD~~s~~~l~~~l~~~~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~~~~~~~~~ 639 (645)
|||+||.++...|.++|+.|.+.||+||||.+|+..+|+.+|++++|++..+.|..++|.+.-...+..+
T Consensus 509 PTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~~~yKkl~~~e~~~~ 578 (582)
T KOG0062|consen 509 PTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGIDKYKKLLGAELRAK 578 (582)
T ss_pred CCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999887766555443
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-76 Score=678.29 Aligned_cols=539 Identities=25% Similarity=0.403 Sum_probs=368.7
Q ss_pred cchhhhhHHHHhhhhhhHhhhccCchhhhcccccccCCCCCCCCCCccEEEEeEEEEeCCee---eeeeeeEEEECCcEE
Q 006442 50 SAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVT---VLKDVTWEVKKGEKV 126 (645)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~nls~~y~~~~---vL~~vsl~i~~Ge~~ 126 (645)
....+...++..++.++..+++..++.+..+.....+. ........|+++||+|+|+.++ +|+++||.|++|+.+
T Consensus 305 gqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~--~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~v 382 (1228)
T KOG0055|consen 305 GQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGR--VLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTV 382 (1228)
T ss_pred hccccchHHHhccccchHHHHHHhcCCCCCCcccccCC--cccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEE
Confidence 34455567788888888888877665544444331111 2223455799999999998764 999999999999999
Q ss_pred EEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc----------eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHH
Q 006442 127 GLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196 (645)
Q Consensus 127 ~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~ 196 (645)
+|||||||||||++++|.++++|++|+|.++|.+. +||.|+|+|.+ ++.||+|||..+-.+. . .
T Consensus 383 alVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvl-F~~tI~eNI~~G~~da-t----~ 456 (1228)
T KOG0055|consen 383 ALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVL-FATTIRENIRYGKPDA-T----R 456 (1228)
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhh-hcccHHHHHhcCCCcc-c----H
Confidence 99999999999999999999999999999998754 59999999954 8999999997543210 0 0
Q ss_pred HHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHcc
Q 006442 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276 (645)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~ 276 (645)
+++.++.+.. ...+++..+.+ |+.+..+++ ..+|||||||||||||||+.
T Consensus 457 ~~i~~a~k~a-na~~fi~~lp~----------------------------g~~T~vge~-g~qLSGGQKQRIAIARalv~ 506 (1228)
T KOG0055|consen 457 EEIEEAAKAA-NAHDFILKLPD----------------------------GYDTLVGER-GVQLSGGQKQRIAIARALVR 506 (1228)
T ss_pred HHHHHHHHHc-cHHHHHHhhHH----------------------------hhcccccCC-CCCCChHHHHHHHHHHHHHh
Confidence 1111111111 11222222221 222223333 45699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcCeEEEEcCceeEEe---------ccChHHHH
Q 006442 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTY---------EGNYSQYV 345 (645)
Q Consensus 277 ~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~d~i~~l~~G~~~~~---------~g~~~~~~ 345 (645)
+|+|||||||||+||+++.+.+.+.|.+ .|+|.|+|+|++..+.. +|+|+++++|++... .|-|.+.+
T Consensus 507 ~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~v~~~G~IvE~G~h~ELi~~~G~Y~~lv 585 (1228)
T KOG0055|consen 507 NPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGTHDELIALGGIYSSLV 585 (1228)
T ss_pred CCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEEEEECCEEEEecCHHHHHhccchHHHHH
Confidence 9999999999999999999999999854 68999999999999998 999999999986321 13332211
Q ss_pred HHHHH-H-----------H-----H-------------------------------H---------H-------------
Q 006442 346 LEKAA-W-----------I-----E-------------------------------S---------Q------------- 355 (645)
Q Consensus 346 ~~~~~-~-----------~-----~-------------------------------~---------~------------- 355 (645)
..... . . . . .
T Consensus 586 ~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~s~~~i~k~~~pe~~~ 665 (1228)
T KOG0055|consen 586 RLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEGEDPEEPVSEEDEKVSFWRIFKLNKPEWPY 665 (1228)
T ss_pred HHHhhhhhhhccccccchhhhhhhccccccccccccCCccccccccccccccccccccccccccccHHHHHHhccchhHH
Confidence 10000 0 0 0 0 0
Q ss_pred -------------------------HHHHH-----HHHHH---H--------------------------HHHHH-----
Q 006442 356 -------------------------YAAWE-----KQQRE---I--------------------------EQTKD----- 371 (645)
Q Consensus 356 -------------------------~~~~~-----~~~~~---~--------------------------~~~~~----- 371 (645)
+..|. ...+. + +++..
T Consensus 666 l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~ 745 (1228)
T KOG0055|consen 666 LLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSM 745 (1228)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 00000 0 00000
Q ss_pred ---------------------HHHHhccCCchhh----------------------------------------------
Q 006442 372 ---------------------LINRLGAGANSGR---------------------------------------------- 384 (645)
Q Consensus 372 ---------------------~~~~l~~~~~~~~---------------------------------------------- 384 (645)
+..|+..+++.-+
T Consensus 746 ~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~ 825 (1228)
T KOG0055|consen 746 MFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSG 825 (1228)
T ss_pred HHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000000
Q ss_pred -------------HHH--------------HHHHH------HHHH-Hh--------------------------------
Q 006442 385 -------------ASS--------------AEKKL------ERLQ-EE-------------------------------- 398 (645)
Q Consensus 385 -------------~~~--------------~~~~l------~rl~-~~-------------------------------- 398 (645)
... ..+++ ++.. .+
T Consensus 826 ~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~ 905 (1228)
T KOG0055|consen 826 YLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFV 905 (1228)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 00000 0000 00
Q ss_pred -----------------------------------------------------hhhcccccccceEEeccC-CC---CCC
Q 006442 399 -----------------------------------------------------EQIEKPFQRKQMKIRFPE-RG---RSG 421 (645)
Q Consensus 399 -----------------------------------------------------~~~~~~~~~~~~~~~~p~-~~---~~~ 421 (645)
..+-...++++ +++.+. .+ ..-
T Consensus 906 ~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~-~i~~~~~~~~~~~~~ 984 (1228)
T KOG0055|consen 906 YALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKP-TIDPDSTSGGKLPNV 984 (1228)
T ss_pred HHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCC-CCCCCCCCCCccccc
Confidence 00000000000 111010 11 112
Q ss_pred CcEEEEEeeeeeeCCe---eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc---chhcc
Q 006442 422 RSVVTIKNLEFGYEDR---LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP---NYFEQ 495 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~---~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~---~~~~q 495 (645)
++-|+++||+|.||.+ ++|+|+||+|++|+.+|||||+||||||.+.+|.+++.|++|.|.+||.+++. .++++
T Consensus 985 ~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~ 1064 (1228)
T KOG0055|consen 985 KGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRK 1064 (1228)
T ss_pred eeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHH
Confidence 3459999999999865 58999999999999999999999999999999999999999999999998742 22222
Q ss_pred c----hhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCC------hhhhcc----CcCcCCHhHHHHHHHHHHHccC
Q 006442 496 N----QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK------ADMLDR----KVSLLSGGEKARLAFCKFMVKP 561 (645)
Q Consensus 496 ~----~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~------~~~~~~----~~~~LSgGqkqrv~lAral~~~ 561 (645)
+ .+++..++.|++||+.++......+++.++++..+.. ++-.|+ +..+||||||||+|||||++++
T Consensus 1065 ~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRn 1144 (1228)
T KOG0055|consen 1065 QIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRN 1144 (1228)
T ss_pred hcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcC
Confidence 2 1223447899999999994445667777776665442 111233 3459999999999999999999
Q ss_pred CCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 562 STLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 562 p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|+||||||+||+||.++.+.++++|.+. +.|+|+|+|++.++.+ ||.|+|+++|++++ .|+.+++++
T Consensus 1145 PkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqn-aD~I~Vi~~G~VvE-~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1145 PKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQN-ADVIAVLKNGKVVE-QGTHDELLA 1213 (1228)
T ss_pred CCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhc-CCEEEEEECCEEEe-cccHHHHHh
Confidence 9999999999999999999999999976 5699999999999987 99999999999996 688888876
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-75 Score=683.59 Aligned_cols=547 Identities=24% Similarity=0.394 Sum_probs=402.3
Q ss_pred cccccccccccccccccCCC--cccccccchhhhhHHHHhhhhhhHhhhccCchhhhcccccccCCCCCCCCCCccEEEE
Q 006442 24 PFASAKSFTNSLNFTKKQRP--RITCQVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLE 101 (645)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~ 101 (645)
.+++...|.....|+.+++| .+|..++..++..+|+.+ +.+++..++........ .........++++
T Consensus 453 ~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~R----i~~fl~~~e~~~~~~~~------~~~~~~~~~i~i~ 522 (1381)
T KOG0054|consen 453 LLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKR----LKEFLLSEELDPDSVER------SPDEAGENAIEIK 522 (1381)
T ss_pred cccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcCcccCcccccc------CCCCCCCceEEEe
Confidence 45566788888888888888 688899999999999999 77777665432211110 1112234569999
Q ss_pred eEEEEeCC---eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCCCCCH
Q 006442 102 NISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTV 178 (645)
Q Consensus 102 nls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~Tv 178 (645)
|.+|+|+. .+.|+||||+|++|+.+||||+.|||||+||.+|+|+++..+|+|.++| .++||||.||+ ++.||
T Consensus 523 ~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g---siaYv~Q~pWI-~ngTv 598 (1381)
T KOG0054|consen 523 NGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG---SVAYVPQQPWI-QNGTV 598 (1381)
T ss_pred eeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC---eEEEeccccHh-hCCcH
Confidence 99999965 3499999999999999999999999999999999999999999999875 59999999998 78999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCC
Q 006442 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258 (645)
Q Consensus 179 ~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~ 258 (645)
+|||.. +..++. + +|..++.+|.++++++-+ . .|..++.++| ..
T Consensus 599 reNILF--G~~~d~----~---------------------------rY~~Vi~aC~L~~Dle~L-p-~GD~TeIGEr-Gi 642 (1381)
T KOG0054|consen 599 RENILF--GSPYDE----E---------------------------RYDKVIKACALKKDLEIL-P-FGDLTEIGER-GI 642 (1381)
T ss_pred HHhhhc--CccccH----H---------------------------HHHHHHHHccCHhHHhhc-C-CCCcceecCC-cc
Confidence 999974 332221 2 334445555555555433 2 2444566666 79
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH-Hcc--CCCeEEEEecCHHHHHhhcCeEEEEcCceeE
Q 006442 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY-LGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335 (645)
Q Consensus 259 ~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~-L~~--~g~tvIivsHd~~~l~~~~d~i~~l~~G~~~ 335 (645)
+|||||||||+||||+|+++||+|||+|+|++|+++.+++.+. ++. .++|+|+|||.++++.+ ||.|++|++|++
T Consensus 643 nLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~-ad~Iivl~~G~I- 720 (1381)
T KOG0054|consen 643 NLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPH-ADQIIVLKDGKI- 720 (1381)
T ss_pred CCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhh-CCEEEEecCCeE-
Confidence 9999999999999999999999999999999999999888764 322 37999999999999986 899999999997
Q ss_pred EeccChHHHHHHHHH-----------------------------------------------------HH-HH-------
Q 006442 336 TYEGNYSQYVLEKAA-----------------------------------------------------WI-ES------- 354 (645)
Q Consensus 336 ~~~g~~~~~~~~~~~-----------------------------------------------------~~-~~------- 354 (645)
...|+|++....... .. ..
T Consensus 721 ~~~Gty~el~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~ 800 (1381)
T KOG0054|consen 721 VESGTYEELLKSGGDFAELAHEEESEQEEEASEKDLESGESSRESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGK 800 (1381)
T ss_pred ecccCHHHHHhcchhHHHHhhccchhhccccccccccccccccchhhhhhhhhcccccccccccchhhHHHHHHHHhcCE
Confidence 455666543310000 00 00
Q ss_pred ----HH--------------------------------------------------------------------------
Q 006442 355 ----QY-------------------------------------------------------------------------- 356 (645)
Q Consensus 355 ----~~-------------------------------------------------------------------------- 356 (645)
.|
T Consensus 801 v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~ 880 (1381)
T KOG0054|consen 801 VSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSF 880 (1381)
T ss_pred eeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 00
Q ss_pred --------------------------------------------------------------------------------
Q 006442 357 -------------------------------------------------------------------------------- 356 (645)
Q Consensus 357 -------------------------------------------------------------------------------- 356 (645)
T Consensus 881 ~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~f 960 (1381)
T KOG0054|consen 881 LFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWF 960 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Confidence
Q ss_pred --------------------------------------------------HHHHHHHHHHHHHHHHHHH-----------
Q 006442 357 --------------------------------------------------AAWEKQQREIEQTKDLINR----------- 375 (645)
Q Consensus 357 --------------------------------------------------~~~~~~~~~~~~~~~~~~~----------- 375 (645)
|+|+++..-++++..+++.
T Consensus 961 li~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a 1040 (1381)
T KOG0054|consen 961 LIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISA 1040 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 0011111000000000000
Q ss_pred ----------h---------------ccC-CchhhHHH------------------------HHHHHHHHHHhhhhcccc
Q 006442 376 ----------L---------------GAG-ANSGRASS------------------------AEKKLERLQEEEQIEKPF 405 (645)
Q Consensus 376 ----------l---------------~~~-~~~~~~~~------------------------~~~~l~rl~~~~~~~~~~ 405 (645)
+ ... .++|.++- ....+||+.++...+.+
T Consensus 1041 ~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E- 1119 (1381)
T KOG0054|consen 1041 NRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSE- 1119 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCC-
Confidence 0 000 11111110 00112556555543222
Q ss_pred cccceEEeccCCCCCCCcEEEEEeeeeeeCC--eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEE
Q 006442 406 QRKQMKIRFPERGRSGRSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483 (645)
Q Consensus 406 ~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~--~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~ 483 (645)
.+....-..|++.||.++.|+++|++.+|.+ .++|+|+||+|++||+|||||++|||||||+.+|+++.+|.+|+|.|
T Consensus 1120 ~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~I 1199 (1381)
T KOG0054|consen 1120 APLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILI 1199 (1381)
T ss_pred CCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEE
Confidence 1111111117788999999999999999965 47999999999999999999999999999999999999999999999
Q ss_pred Cceeccc----------chhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhh------hcc----CcCc
Q 006442 484 GEHNVLP----------NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM------LDR----KVSL 543 (645)
Q Consensus 484 ~g~~~~~----------~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~------~~~----~~~~ 543 (645)
||.|+.. ..++|. ...++-|++.|+-- ...+++++++++|+++++.... +|. ...+
T Consensus 1200 DgvdI~~igL~dLRsrlsIIPQd---PvLFsGTvR~NLDP-f~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N 1275 (1381)
T KOG0054|consen 1200 DGVDISKIGLHDLRSRLSIIPQD---PVLFSGTVRFNLDP-FDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGEN 1275 (1381)
T ss_pred cCeecccccHHHHHhcCeeeCCC---CceecCccccccCc-ccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCcc
Confidence 9998732 233443 34467888888743 3457788899999999885322 122 2358
Q ss_pred CCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHh-cC-ceEEEEecCHHHHHhhCCEEEEEeCCeEEee
Q 006442 544 LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE-YK-GTVITVSHDRYFVKQIVNRVVEVKGSNLQDY 621 (645)
Q Consensus 544 LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~-~~-~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~ 621 (645)
+|-||||.|||||||+++++||+|||+|+++|+++...+++.|++ |+ .|||.|+|++++|.+ ||||+||++|+++++
T Consensus 1276 ~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd-~DrVlVld~G~v~Ef 1354 (1381)
T KOG0054|consen 1276 FSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEF 1354 (1381)
T ss_pred CChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhh-cCeEEEeeCCeEeec
Confidence 999999999999999999999999999999999999999999995 54 599999999999999 999999999999987
Q ss_pred CCChhHHH
Q 006442 622 AGDYNQVQ 629 (645)
Q Consensus 622 ~~~~~~~~ 629 (645)
+. +..++
T Consensus 1355 ds-P~~Ll 1361 (1381)
T KOG0054|consen 1355 DS-PAELL 1361 (1381)
T ss_pred CC-hHHHH
Confidence 54 44454
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-73 Score=583.62 Aligned_cols=448 Identities=21% Similarity=0.336 Sum_probs=360.3
Q ss_pred CccEEEEeEEEEeC----CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEEcCCC-----
Q 006442 95 SSGVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN----- 160 (645)
Q Consensus 95 ~~~i~i~nls~~y~----~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p-----~~G~I~~~~~~----- 160 (645)
.+.++++|++..|. ...++++|||+|++||.+||||.+|||||-..+.|+|+++. -+|+|.++|.+
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 45799999999995 45699999999999999999999999999999999999875 37899998753
Q ss_pred ---------ceEEEEeccCcc--CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHh
Q 006442 161 ---------MKIAFLSQEFEV--SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQA 229 (645)
Q Consensus 161 ---------~~i~~v~Q~~~~--~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (645)
.+|+++||+|-. .+-.||...+...+ +....
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l--------------------------------------~~Hrg 125 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVL--------------------------------------RLHRG 125 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHH--------------------------------------HHHhc
Confidence 279999999943 23335544332111 12223
Q ss_pred CChhcHHHHHHhhchhcCCCcc--cccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----
Q 006442 230 VNLDTLDAKVSKLMPELGFTAD--DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---- 303 (645)
Q Consensus 230 ~~~~~~~~~i~~ll~~lgl~~~--~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---- 303 (645)
+...+.++++.++|+.+|++.+ ..+.++++|||||||||.||.||+.+|++||.||||.+||.....++.++|+
T Consensus 126 ~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~ 205 (534)
T COG4172 126 LSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQA 205 (534)
T ss_pred ccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHH
Confidence 4555677889999999999643 5778899999999999999999999999999999999999999999988875
Q ss_pred cCCCeEEEEecCHHHHHhhcCeEEEEcCceeEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchh
Q 006442 304 KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSG 383 (645)
Q Consensus 304 ~~g~tvIivsHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (645)
+.|.++++||||+..+.+++|||++|..|.+. -.|...+.+... ...| ++.+++.
T Consensus 206 ~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv-E~~~t~~lF~~P-------qHpY---------Tr~Ll~a-------- 260 (534)
T COG4172 206 ELGMAILFITHDLGIVRKFADRVYVMQHGEIV-ETGTTETLFAAP-------QHPY---------TRKLLAA-------- 260 (534)
T ss_pred HhCcEEEEEeccHHHHHHhhhhEEEEeccEEe-ecCcHHHHhhCC-------CChH---------HHHHHhc--------
Confidence 47999999999999999999999999999974 233322211110 0011 1111110
Q ss_pred hHHHHHHHHHHHHHhhhhcccccccceEEeccCCCCCCCcEEEEEeeeeeeCC-----------eeceeeeeEEEecCcE
Q 006442 384 RASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-----------RLLFNRANLTIERGEK 452 (645)
Q Consensus 384 ~~~~~~~~l~rl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~-----------~~~l~~vsl~i~~Ge~ 452 (645)
.|...+ ++......++++.+++.+.|+- ..+++++||++++||.
T Consensus 261 -------------------eP~g~~------~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqT 315 (534)
T COG4172 261 -------------------EPSGDP------PPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQT 315 (534)
T ss_pred -------------------CCCCCC------CCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCe
Confidence 111110 2223346778999999999852 2478999999999999
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc-------------chhccchhhcCCCCCCHHHHHHhhhc---
Q 006442 453 TAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP-------------NYFEQNQAEALDLDKTVLETVAEAAE--- 516 (645)
Q Consensus 453 v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~-------------~~~~q~~~~~l~~~~tv~e~v~~~~~--- 516 (645)
+||||++|||||||-.+|.+++++. |+|.++|.++.. ..++|++...+.+.+||.+.|.++..
T Consensus 316 lGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~ 394 (534)
T COG4172 316 LGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHE 394 (534)
T ss_pred EEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcC
Confidence 9999999999999999999999887 999999987631 23456666678899999999987642
Q ss_pred -----cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--
Q 006442 517 -----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY-- 589 (645)
Q Consensus 517 -----~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~-- 589 (645)
....+++.++|..+|+.....+++|+++|||||||++|||||+.+|++++||||||+||..-+..+.++|+..
T Consensus 395 ~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~ 474 (534)
T COG4172 395 PKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQ 474 (534)
T ss_pred CCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHH
Confidence 1234568899999999988999999999999999999999999999999999999999999999999988754
Q ss_pred --CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHHH
Q 006442 590 --KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSLW 632 (645)
Q Consensus 590 --~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~~ 632 (645)
+-+-++||||+..+..+||+|+||.+|+|++ .|+.++.++..
T Consensus 475 k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE-~G~~~~if~~P 518 (534)
T COG4172 475 KHGLSYLFISHDLAVVRALCHRVIVMRDGKIVE-QGPTEAVFANP 518 (534)
T ss_pred HhCCeEEEEeccHHHHHHhhceEEEEeCCEEee-eCCHHHHhcCC
Confidence 4599999999999999999999999999997 57766665443
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-73 Score=641.78 Aligned_cols=420 Identities=26% Similarity=0.379 Sum_probs=321.1
Q ss_pred eEEEEeCCe-eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEE-----------EcCCC---------
Q 006442 102 NISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-----------KAKSN--------- 160 (645)
Q Consensus 102 nls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~-----------~~~~~--------- 160 (645)
+++++|+.+ .+|++++ .+++|+++||+||||||||||+++|+|+++|++|+|. +.|..
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~ 156 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLY 156 (590)
T ss_pred CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHh
Confidence 489999875 5999999 9999999999999999999999999999999999997 54421
Q ss_pred ---ceEEEEeccCccCC---CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhc
Q 006442 161 ---MKIAFLSQEFEVSM---SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (645)
Q Consensus 161 ---~~i~~v~Q~~~~~~---~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (645)
.++++.+|.....+ ..||.|++... .
T Consensus 157 ~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~------------------------------------------------~ 188 (590)
T PRK13409 157 NGEIKVVHKPQYVDLIPKVFKGKVRELLKKV------------------------------------------------D 188 (590)
T ss_pred ccCcceeecccchhhhhhhhcchHHHHHHhh------------------------------------------------h
Confidence 23555555433222 23666654210 0
Q ss_pred HHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccC--CCeEEEE
Q 006442 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVII 312 (645)
Q Consensus 235 ~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~--g~tvIiv 312 (645)
...++.++++.+|+. ...++++.+|||||||||+||+||+.+|++|||||||++||+.++.++.++|++. |+|||+|
T Consensus 189 ~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIiv 267 (590)
T PRK13409 189 ERGKLDEVVERLGLE-NILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVV 267 (590)
T ss_pred HHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEE
Confidence 123456677888885 5679999999999999999999999999999999999999999999999887543 8999999
Q ss_pred ecCHHHHHhhcCeEEEEcCceeEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHH
Q 006442 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKL 392 (645)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 392 (645)
|||++++..+||+|+++.++. |.|..+....... ..++ ..+..+.. .
T Consensus 268 sHd~~~l~~~~D~v~vl~~~~-----g~~g~~~~~~~~~------------~~i~---~~~~~~~~---------~---- 314 (590)
T PRK13409 268 EHDLAVLDYLADNVHIAYGEP-----GAYGVVSKPKGVR------------VGIN---EYLKGYLP---------E---- 314 (590)
T ss_pred eCCHHHHHHhCCEEEEEeCCc-----cccceecchhHHH------------HhHH---HHHHhcch---------h----
Confidence 999999999999999997642 1111111000000 0000 00000000 0
Q ss_pred HHHHHhhhhcccccccceEEeccCC--CCCCCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHH
Q 006442 393 ERLQEEEQIEKPFQRKQMKIRFPER--GRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470 (645)
Q Consensus 393 ~rl~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l 470 (645)
++.+ .. + ....+.++++ ...+.++++++|+++.|++. .|+++||+|++||+++|+||||||||||+++|
T Consensus 315 e~~~----~~-~---~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L 385 (590)
T PRK13409 315 ENMR----IR-P---EPIEFEERPPRDESERETLVEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLL 385 (590)
T ss_pred hhhh----cc-c---cCcceecCCCccccCCceEEEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHH
Confidence 0000 00 0 0001111111 11356789999999999865 49999999999999999999999999999999
Q ss_pred HcCCCCCeeEEEECceecccchhccchhhcCCCCCCHHHHHHhhhccc-cHHHHHHHHhhcCCChhhhccCcCcCCHhHH
Q 006442 471 MGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDW-RIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549 (645)
Q Consensus 471 ~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~-~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqk 549 (645)
+|+++|++|+|.++ +..+|++|+. .+.+..||.+++....... ....+.++|+.+++. +..++++.+||||||
T Consensus 386 ~Gl~~p~~G~I~~~---~~i~y~~Q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~-~~~~~~~~~LSGGe~ 459 (590)
T PRK13409 386 AGVLKPDEGEVDPE---LKISYKPQYI--KPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLE-RLLDKNVKDLSGGEL 459 (590)
T ss_pred hCCCCCCceEEEEe---eeEEEecccc--cCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCH-HHHhCCcccCCHHHH
Confidence 99999999999986 3567777764 3457889999997643222 223467899999995 678999999999999
Q ss_pred HHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEe
Q 006442 550 ARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (645)
Q Consensus 550 qrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~ 620 (645)
|||+|||||+++|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|||+++|++ ++..
T Consensus 460 QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~ 533 (590)
T PRK13409 460 QRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGK 533 (590)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-ccee
Confidence 9999999999999999999999999999999999999875 56999999999999999999999975 5543
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-73 Score=582.02 Aligned_cols=517 Identities=31% Similarity=0.540 Sum_probs=413.6
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCC
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~ 174 (645)
...|.|+|.+.+-.++.++.+.||.|-.|.++|||||||-||||||+.|+.--- .+. +++.+-||.|+... .
T Consensus 262 a~DIKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Ral------aIP-pnIDvLlCEQEvva-d 333 (807)
T KOG0066|consen 262 AMDIKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARAL------AIP-PNIDVLLCEQEVVA-D 333 (807)
T ss_pred cccceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhc------cCC-CCCceEeeeeeeee-c
Confidence 345999999999999999999999999999999999999999999999986311 111 35678899998643 3
Q ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCccccc
Q 006442 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (645)
Q Consensus 175 ~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~ 254 (645)
..|..+.+..+-...........++...++.-. .... +++.........+.+...+.+.+.+|..|||+.+..+
T Consensus 334 ~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd--~taa----Erl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~ 407 (807)
T KOG0066|consen 334 STSAIDTVLKADKKRLALLEEEAKLMSQIEEGD--TTAA----ERLKEVADELRAIGADSAEARARRILAGLGFSKEMQE 407 (807)
T ss_pred CcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCc--hHHH----HHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhc
Confidence 445555554333333333333334444443211 1111 1222222333457788889999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcCcee
Q 006442 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (645)
Q Consensus 255 ~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~i~~l~~G~~ 334 (645)
+|...+|||||+||+|||||+..|.+|.|||||||||..+..||.++|+.+.+|.+|||||-.|++.+|+.|+.+++.++
T Consensus 408 rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~qkL 487 (807)
T KOG0066|consen 408 RPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKL 487 (807)
T ss_pred CCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHH-HHHHHHHHhhh---------hccc
Q 006442 335 RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAE-KKLERLQEEEQ---------IEKP 404 (645)
Q Consensus 335 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~l~rl~~~~~---------~~~~ 404 (645)
.+|.|||.-|-.............|+++++.+..+.. .+.++..+.... ..+.|-+.-.. ...|
T Consensus 488 hyYrGNY~~FKKmY~Qk~~e~~K~yekQeK~LkelKa------~GkS~KqAEkq~Ke~ltrKq~K~~~Knq~dded~gap 561 (807)
T KOG0066|consen 488 HYYRGNYTLFKKMYAQKMQEHEKNYEKQEKQLKELKA------EGKSAKQAEKQVKEQLTRKQKKGGKKNQNDDEDAGAP 561 (807)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCcchHHHHHHHHHHHHHHHHhccccccCccccccCH
Confidence 9999999988666666555566677777666543321 111122221111 11222211000 0001
Q ss_pred c-----cccceEEeccCCCCCCCcEEEEEeeeeeeC-CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCe
Q 006442 405 F-----QRKQMKIRFPERGRSGRSVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478 (645)
Q Consensus 405 ~-----~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~-~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~ 478 (645)
+ ..-..+|.||.+.....+++-+.+|+|.|+ .+++|++++|-|..-.+||||||||.||||||++|.|.+.|..
T Consensus 562 ELL~RpKEY~VkF~FPep~~L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~ 641 (807)
T KOG0066|consen 562 ELLQRPKEYSVKFQFPEPTKLNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPND 641 (807)
T ss_pred HHHhCchheEEEEecCCCCCCCCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCc
Confidence 1 112457888988888899999999999995 5789999999999999999999999999999999999999999
Q ss_pred eEEEECceecccchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHH
Q 006442 479 GEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (645)
Q Consensus 479 G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral 558 (645)
|+..-+ +.+.+++|.|+..+.+..+.|..+++...+. ...++++..|+.||+..+...-.+..||||||.||+||-.-
T Consensus 642 GE~RKn-hrL~iG~FdQh~~E~L~~Eetp~EyLqr~FN-lpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLa 719 (807)
T KOG0066|consen 642 GELRKN-HRLRIGWFDQHANEALNGEETPVEYLQRKFN-LPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELA 719 (807)
T ss_pred chhhcc-ceeeeechhhhhHHhhccccCHHHHHHHhcC-CChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHh
Confidence 998765 5678899999988889999999999987653 45678999999999987777788899999999999999999
Q ss_pred ccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHHHh
Q 006442 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSLWF 633 (645)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~~~ 633 (645)
+..|+|||||||||+||+++...|.++|++|.+.|||||||..+|.+.....||+++..|-+..|+|++|.+-..
T Consensus 720 l~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDYkkEVL 794 (807)
T KOG0066|consen 720 LGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDYKKEVL 794 (807)
T ss_pred cCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecccceeeecCceEEEEccCChhhccccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998889999999999888999999976444
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-72 Score=690.04 Aligned_cols=485 Identities=20% Similarity=0.344 Sum_probs=341.5
Q ss_pred cEEEEeEEEEeCC---eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCc-cEEEEcCCCceEEEEeccCcc
Q 006442 97 GVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS-GNVIKAKSNMKIAFLSQEFEV 172 (645)
Q Consensus 97 ~i~i~nls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~-G~I~~~~~~~~i~~v~Q~~~~ 172 (645)
.|+++|++|+|++ .++|+|+||+|++|++++|+||+|||||||+++|+|+++|++ |+|.+. .+|+||+|+||+
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~---~~Iayv~Q~p~L 690 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIR---GTVAYVPQVSWI 690 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEc---CeEEEEcCcccc
Confidence 5999999999964 569999999999999999999999999999999999999999 999874 479999999998
Q ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCccc
Q 006442 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (645)
Q Consensus 173 ~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~ 252 (645)
++.||+|||..+-. .+ .+++.+.++ .+.+.++++.+ . -|+.+..
T Consensus 691 -fngTIreNI~fg~~--~d----~e~y~~vl~---------------------------a~~L~~di~~L-P-~Gd~T~I 734 (1622)
T PLN03130 691 -FNATVRDNILFGSP--FD----PERYERAID---------------------------VTALQHDLDLL-P-GGDLTEI 734 (1622)
T ss_pred -CCCCHHHHHhCCCc--cc----HHHHHHHHH---------------------------HhCcHHHHHhC-C-Ccccccc
Confidence 67899999974321 11 122333333 23333343332 1 2444444
Q ss_pred ccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH-HHHcc--CCCeEEEEecCHHHHHhhcCeEEEE
Q 006442 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLE-GYLGK--QDVPMVIISHDRAFLDQLCTKIVET 329 (645)
Q Consensus 253 ~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~-~~L~~--~g~tvIivsHd~~~l~~~~d~i~~l 329 (645)
+++ ..+|||||||||+|||||+++|+|||||||||+||+++.+.+. +.++. .++|+|+|||+++.+.. ||+|++|
T Consensus 735 Ge~-G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~-aD~Ii~L 812 (1622)
T PLN03130 735 GER-GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQ-VDRIILV 812 (1622)
T ss_pred cCC-CCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHh-CCEEEEE
Confidence 444 6789999999999999999999999999999999999887765 34442 48999999999998865 9999999
Q ss_pred cCceeEEeccChHHHHHHH------------------------------------------------------------H
Q 006442 330 EMGVSRTYEGNYSQYVLEK------------------------------------------------------------A 349 (645)
Q Consensus 330 ~~G~~~~~~g~~~~~~~~~------------------------------------------------------------~ 349 (645)
++|++. ..|++++..... .
T Consensus 813 ~~G~i~-e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 891 (1622)
T PLN03130 813 HEGMIK-EEGTYEELSNNGPLFQKLMENAGKMEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLIKQ 891 (1622)
T ss_pred eCCEEE-EeCCHHHHHhcchhHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccchhhhhH
Confidence 999863 233332211000 0
Q ss_pred HHHH------HHHHHHH--------------------------------HHH----------------------------
Q 006442 350 AWIE------SQYAAWE--------------------------------KQQ---------------------------- 363 (645)
Q Consensus 350 ~~~~------~~~~~~~--------------------------------~~~---------------------------- 363 (645)
+... ..|..|. |..
T Consensus 892 e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~i~~~l~~~~~i~~~ 971 (1622)
T PLN03130 892 EERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVTL 971 (1622)
T ss_pred HHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 0000 0000000 000
Q ss_pred --------------------------------------------------------------------------------
Q 006442 364 -------------------------------------------------------------------------------- 363 (645)
Q Consensus 364 -------------------------------------------------------------------------------- 363 (645)
T Consensus 972 ~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~ 1051 (1622)
T PLN03130 972 LNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIV 1051 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred --------------------------HHHHH-----------------------------------HHHHHH--------
Q 006442 364 --------------------------REIEQ-----------------------------------TKDLIN-------- 374 (645)
Q Consensus 364 --------------------------~~~~~-----------------------------------~~~~~~-------- 374 (645)
++.++ ..+.++
T Consensus 1052 ~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~ 1131 (1622)
T PLN03130 1052 STISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLV 1131 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 000000
Q ss_pred -----Hh----------------------ccCC--c----hhhHH------------------------HHHHHHHHHHH
Q 006442 375 -----RL----------------------GAGA--N----SGRAS------------------------SAEKKLERLQE 397 (645)
Q Consensus 375 -----~l----------------------~~~~--~----~~~~~------------------------~~~~~l~rl~~ 397 (645)
++ .... . ++..+ .....++|+.+
T Consensus 1132 ~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e 1211 (1622)
T PLN03130 1132 NMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGT 1211 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000 0 00000 00000011111
Q ss_pred hhhhcccccccceEEeccCCCCCCCcEEEEEeeeeeeCC--eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 398 EEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 398 ~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~--~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
.... +++........-|+..|+.++.|+++||+++|++ +++|+|+||+|++||++||||+||||||||+++|+|+++
T Consensus 1212 ~~~~-~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~ 1290 (1622)
T PLN03130 1212 YIDL-PSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE 1290 (1622)
T ss_pred HhCC-CCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 1100 0000000000012233555667999999999964 379999999999999999999999999999999999999
Q ss_pred CCeeEEEECceecc----------cchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhh--------
Q 006442 476 PRGGEVLLGEHNVL----------PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML-------- 537 (645)
Q Consensus 476 p~~G~i~~~g~~~~----------~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~-------- 537 (645)
|++|+|.+||.++. .++++|+ + ..++.|+++|+.... ...++++.+++++.++. +..
T Consensus 1291 p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQd--p-~LF~GTIreNLd~~~-~~tdeei~~Al~~a~l~-~~I~~lp~GLd 1365 (1622)
T PLN03130 1291 LERGRILIDGCDISKFGLMDLRKVLGIIPQA--P-VLFSGTVRFNLDPFN-EHNDADLWESLERAHLK-DVIRRNSLGLD 1365 (1622)
T ss_pred CCCceEEECCEecccCCHHHHHhccEEECCC--C-ccccccHHHHhCcCC-CCCHHHHHHHHHHcCcH-HHHHhCccccC
Confidence 99999999999873 2345554 3 346789999997654 45677888888888773 222
Q ss_pred ---ccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEE
Q 006442 538 ---DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVE 612 (645)
Q Consensus 538 ---~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~ 612 (645)
.....+||||||||+||||||+++|+|||||||||+||.++.+.+++.|++. +.|||+|+|+++++.+ ||||++
T Consensus 1366 t~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~DrIlV 1444 (1622)
T PLN03130 1366 AEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILV 1444 (1622)
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-CCEEEE
Confidence 2233589999999999999999999999999999999999999999999864 3699999999999987 999999
Q ss_pred EeCCeEEeeCCChhHHHHH
Q 006442 613 VKGSNLQDYAGDYNQVQSL 631 (645)
Q Consensus 613 l~~g~i~~~~~~~~~~~~~ 631 (645)
|++|+++++ |+++++++.
T Consensus 1445 Ld~G~IvE~-Gt~~eLl~~ 1462 (1622)
T PLN03130 1445 LDAGRVVEF-DTPENLLSN 1462 (1622)
T ss_pred EECCEEEEe-CCHHHHHhC
Confidence 999999974 777777643
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-71 Score=684.73 Aligned_cols=205 Identities=19% Similarity=0.377 Sum_probs=175.0
Q ss_pred CCCCcEEEEEeeeeeeCC--eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-------
Q 006442 419 RSGRSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------- 489 (645)
Q Consensus 419 ~~~~~~i~~~~v~~~y~~--~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------- 489 (645)
|+..+.|+++||+++|++ +++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.+||.++.
T Consensus 1229 ~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~l 1308 (1495)
T PLN03232 1229 WPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDL 1308 (1495)
T ss_pred CCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHH
Confidence 455567999999999953 47999999999999999999999999999999999999999999999999873
Q ss_pred ---cchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhh-----------ccCcCcCCHhHHHHHHHH
Q 006442 490 ---PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML-----------DRKVSLLSGGEKARLAFC 555 (645)
Q Consensus 490 ---~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~-----------~~~~~~LSgGqkqrv~lA 555 (645)
.++++|+ +.+ ++.|+++|+.... ...++++.++++..++. +.. .....+||||||||+|||
T Consensus 1309 R~~i~iVpQd--p~L-F~gTIr~NL~~~~-~~sdeei~~al~~a~l~-~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLA 1383 (1495)
T PLN03232 1309 RRVLSIIPQS--PVL-FSGTVRFNIDPFS-EHNDADLWEALERAHIK-DVIDRNPFGLDAEVSEGGENFSVGQRQLLSLA 1383 (1495)
T ss_pred HhhcEEECCC--Cee-eCccHHHHcCCCC-CCCHHHHHHHHHHcCCH-HHHHhCcCCCCceecCCCCCCCHHHHHHHHHH
Confidence 2345554 334 5789999997653 45677888888888774 222 233458999999999999
Q ss_pred HHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|||+++|+|||||||||+||.++.+.+++.|++. +.|||+|+|+++++.+ ||||++|++|+++++ |+++++++
T Consensus 1384 RALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~-Gt~~eLl~ 1458 (1495)
T PLN03232 1384 RALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEY-DSPQELLS 1458 (1495)
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEE-CCHHHHHh
Confidence 9999999999999999999999999999999865 4699999999999988 999999999999974 77777764
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-70 Score=677.68 Aligned_cols=208 Identities=22% Similarity=0.379 Sum_probs=176.1
Q ss_pred CCCCCcEEEEEeeeeeeCC--eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc------
Q 006442 418 GRSGRSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------ 489 (645)
Q Consensus 418 ~~~~~~~i~~~~v~~~y~~--~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------ 489 (645)
.|+.++.|+++||+++|++ .++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.+||.++.
T Consensus 1278 ~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~ 1357 (1522)
T TIGR00957 1278 GWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHD 1357 (1522)
T ss_pred CCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHH
Confidence 4566677999999999974 46999999999999999999999999999999999999999999999999873
Q ss_pred ----cchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChh------hhcc----CcCcCCHhHHHHHHHH
Q 006442 490 ----PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD------MLDR----KVSLLSGGEKARLAFC 555 (645)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~------~~~~----~~~~LSgGqkqrv~lA 555 (645)
.++++|+ + ..++.|+++|+... ....++++.++|+.+++... -.+. ...+||||||||+|||
T Consensus 1358 LR~~i~iVpQd--p-~LF~gTIr~NLdp~-~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LA 1433 (1522)
T TIGR00957 1358 LRFKITIIPQD--P-VLFSGSLRMNLDPF-SQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLA 1433 (1522)
T ss_pred HHhcCeEECCC--C-cccCccHHHHcCcc-cCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHH
Confidence 2345554 2 34678999999632 24667788888888877421 1232 3357999999999999
Q ss_pred HHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHH
Q 006442 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSL 631 (645)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~ 631 (645)
|||+++|+||||||||++||.++...|++.|++. +.|||+|+|+++.+.+ ||||++|++|+++++ |+++++++.
T Consensus 1434 RALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE~-G~~~eLl~~ 1509 (1522)
T TIGR00957 1434 RALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAEF-GAPSNLLQQ 1509 (1522)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEEE-CCHHHHHhC
Confidence 9999999999999999999999999999999864 3599999999999987 899999999999975 788887653
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-71 Score=594.38 Aligned_cols=433 Identities=25% Similarity=0.402 Sum_probs=354.6
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----------ceE
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKI 163 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-----------~~i 163 (645)
.+.++++|++|+|++.++|++|||+|.+||+++|+|.||||||||+|+|+|.++|++|+|.++|.. ..|
T Consensus 6 ~~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 6 PPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred cceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 346999999999999999999999999999999999999999999999999999999999999753 259
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhc
Q 006442 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (645)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (645)
+.++|+..+.+++||.|||+.+-... .....++...+.++.+++|
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~-----------------------------------~~~g~id~~~m~~~A~~~l 130 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPT-----------------------------------RRFGLIDRKAMRRRARELL 130 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccc-----------------------------------cCCCccCHHHHHHHHHHHH
Confidence 99999999999999999996321100 0012245556778888999
Q ss_pred hhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHHHHH
Q 006442 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLD 320 (645)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L---~~~g~tvIivsHd~~~l~ 320 (645)
..+|+.. ..+.++.+||+||||.|+|||||..+++||||||||++|+....+.|++++ +++|.+||+|||+++++.
T Consensus 131 ~~lg~~~-~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~ 209 (500)
T COG1129 131 ARLGLDI-DPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVF 209 (500)
T ss_pred HHcCCCC-ChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHH
Confidence 9999863 388899999999999999999999999999999999999999999998875 568999999999999999
Q ss_pred hhcCeEEEEcCceeEEeccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhh
Q 006442 321 QLCTKIVETEMGVSRTYEGN-YSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEE 399 (645)
Q Consensus 321 ~~~d~i~~l~~G~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~rl~~~~ 399 (645)
++||||.+|+||+... ... ..++-. .+++..+- |+ .
T Consensus 210 ~i~DritVlRDG~~v~-~~~~~~~~~~-----------------------~~lv~~Mv-----Gr------~-------- 246 (500)
T COG1129 210 EIADRITVLRDGRVVG-TRPTAAETSE-----------------------DELVRLMV-----GR------E-------- 246 (500)
T ss_pred HhcCEEEEEeCCEEee-ecccccCCCH-----------------------HHHHHHhh-----Cc------c--------
Confidence 9999999999998531 111 000000 00111110 00 0
Q ss_pred hhcccccccceEEecc--CCCCCCCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 006442 400 QIEKPFQRKQMKIRFP--ERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477 (645)
Q Consensus 400 ~~~~~~~~~~~~~~~p--~~~~~~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~ 477 (645)
... .|| .....++++++++|++..- .++++||++++||++||.|--|||+|-|+++|+|..++.
T Consensus 247 -~~~---------~~~~~~~~~~~~~~l~v~~l~~~~----~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~ 312 (500)
T COG1129 247 -LED---------LFPEPPEEGIGEPVLEVRNLSGGG----KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPAS 312 (500)
T ss_pred -hhh---------hcccccccCCCCcEEEEecCCCCC----ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCC
Confidence 000 011 1113467789999998542 589999999999999999999999999999999999999
Q ss_pred eeEEEECceeccc-----------chhcc-chhhcCCCCCCHHHHHHhhhc-c----------ccHHHHHHHHhhcCCCh
Q 006442 478 GGEVLLGEHNVLP-----------NYFEQ-NQAEALDLDKTVLETVAEAAE-D----------WRIDDIKGLLGRCNFKA 534 (645)
Q Consensus 478 ~G~i~~~g~~~~~-----------~~~~q-~~~~~l~~~~tv~e~v~~~~~-~----------~~~~~~~~~L~~~~l~~ 534 (645)
+|+|.++|.++.. +|++. ...+.+...+++.+|+..... . ...+.+..+...+++..
T Consensus 313 ~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~ 392 (500)
T COG1129 313 SGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKT 392 (500)
T ss_pred CceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCccc
Confidence 9999999987632 24432 244678889999999865411 0 11234677888999988
Q ss_pred hhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEE
Q 006442 535 DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVV 611 (645)
Q Consensus 535 ~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~ 611 (645)
...+.++.+||||.||||+|||+|..+|++|||||||.|+|..++..+.++|+++ +.+||+||-++.++..+||||+
T Consensus 393 ~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIl 472 (500)
T COG1129 393 PSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRIL 472 (500)
T ss_pred CCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEE
Confidence 7788999999999999999999999999999999999999999999999999876 5699999999999999999999
Q ss_pred EEeCCeEEe
Q 006442 612 EVKGSNLQD 620 (645)
Q Consensus 612 ~l~~g~i~~ 620 (645)
+|.+|+++.
T Consensus 473 Vm~~Gri~~ 481 (500)
T COG1129 473 VMREGRIVG 481 (500)
T ss_pred EEECCEEEE
Confidence 999999975
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-66 Score=637.00 Aligned_cols=204 Identities=24% Similarity=0.414 Sum_probs=174.8
Q ss_pred cEEEEEeeeeeeCC---eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-----------------------
Q 006442 423 SVVTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP----------------------- 476 (645)
Q Consensus 423 ~~i~~~~v~~~y~~---~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p----------------------- 476 (645)
+-|+++||+|+|++ +++|+|+||+|++|+++||+||||||||||+++|+|+++|
T Consensus 1164 g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQ 1243 (1466)
T ss_pred ceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccc
Confidence 45999999999963 4799999999999999999999999999999999999998
Q ss_pred -------------------------------CeeEEEECceecc----------cchhccchhhcCCCCCCHHHHHHhhh
Q 006442 477 -------------------------------RGGEVLLGEHNVL----------PNYFEQNQAEALDLDKTVLETVAEAA 515 (645)
Q Consensus 477 -------------------------------~~G~i~~~g~~~~----------~~~~~q~~~~~l~~~~tv~e~v~~~~ 515 (645)
++|+|.+||.++. .+|++|+ + ..++.|++|||..+.
T Consensus 1244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qe--p-~LF~gTIreNI~~g~ 1320 (1466)
T PTZ00265 1244 GDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQE--P-MLFNMSIYENIKFGK 1320 (1466)
T ss_pred cccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCC--C-ccccccHHHHHhcCC
Confidence 6999999999873 2455554 2 346899999999986
Q ss_pred ccccHHHHHHHHhhcCCCh------hhhc----cCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHH
Q 006442 516 EDWRIDDIKGLLGRCNFKA------DMLD----RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585 (645)
Q Consensus 516 ~~~~~~~~~~~L~~~~l~~------~~~~----~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~ 585 (645)
+....+++..+++..++.. +-.+ .....||||||||+||||||+++|+|||||||||+||.++.+.+++.
T Consensus 1321 ~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~ 1400 (1466)
T PTZ00265 1321 EDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKT 1400 (1466)
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH
Confidence 6667778888888777631 1112 33457999999999999999999999999999999999999999999
Q ss_pred HHhc----CceEEEEecCHHHHHhhCCEEEEEeC----CeEEeeCCChhHHHH
Q 006442 586 ISEY----KGTVITVSHDRYFVKQIVNRVVEVKG----SNLQDYAGDYNQVQS 630 (645)
Q Consensus 586 l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~----g~i~~~~~~~~~~~~ 630 (645)
|.+. +.|+|+|||++..+.. ||+|++|++ |+++...|.++++++
T Consensus 1401 L~~~~~~~~~TvIiIaHRlsti~~-aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1401 IVDIKDKADKTIITIAHRIASIKR-SDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHhccCCCEEEEEechHHHHHh-CCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 9875 4699999999999976 999999998 897655799999875
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-66 Score=639.75 Aligned_cols=203 Identities=21% Similarity=0.329 Sum_probs=173.2
Q ss_pred CcEEEEEeeeeeeCC--eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------
Q 006442 422 RSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~--~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (645)
.+.|+++||+++|++ .++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.+||.++.
T Consensus 1306 ~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~ 1385 (1560)
T PTZ00243 1306 AGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQ 1385 (1560)
T ss_pred CCeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhc
Confidence 456999999999964 35999999999999999999999999999999999999999999999999873
Q ss_pred cchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhh------hc----cCcCcCCHhHHHHHHHHHHHc
Q 006442 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM------LD----RKVSLLSGGEKARLAFCKFMV 559 (645)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~------~~----~~~~~LSgGqkqrv~lAral~ 559 (645)
.++++|+ + ..++.|+++|+... ....++++..+++.+++.... .+ ....+||||||||+||||||+
T Consensus 1386 I~iVpQd--p-~LF~gTIreNIdp~-~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL 1461 (1560)
T PTZ00243 1386 FSMIPQD--P-VLFDGTVRQNVDPF-LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALL 1461 (1560)
T ss_pred ceEECCC--C-ccccccHHHHhCcc-cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHh
Confidence 2345554 2 34678999999653 345678899999998884211 12 233579999999999999999
Q ss_pred cC-CCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 560 KP-STLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 560 ~~-p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
++ |+|||||||||+||.++.+.+++.|++. +.|||+|+|+++.+.. ||+|++|++|++++ .|.++++++
T Consensus 1462 ~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~VvE-~Gt~~eLl~ 1533 (1560)
T PTZ00243 1462 KKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQ-YDKIIVMDHGAVAE-MGSPRELVM 1533 (1560)
T ss_pred cCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHh-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 95 8999999999999999999999999864 3599999999999987 99999999999997 488888764
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-66 Score=638.84 Aligned_cols=206 Identities=21% Similarity=0.376 Sum_probs=173.9
Q ss_pred CCCCCcEEEEEeeeeeeCC--eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc------
Q 006442 418 GRSGRSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------ 489 (645)
Q Consensus 418 ~~~~~~~i~~~~v~~~y~~--~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------ 489 (645)
.|+..+.|+++||+++|++ +++|+|+||+|++||++||||+||||||||+++|+|+++ .+|+|.+||.++.
T Consensus 1211 ~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~ 1289 (1490)
T TIGR01271 1211 CWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQT 1289 (1490)
T ss_pred CCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHH
Confidence 4666678999999999964 679999999999999999999999999999999999997 7999999999873
Q ss_pred ----cchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhh------hccC----cCcCCHhHHHHHHHH
Q 006442 490 ----PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM------LDRK----VSLLSGGEKARLAFC 555 (645)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~------~~~~----~~~LSgGqkqrv~lA 555 (645)
.++++|+ + ..++.|+++|+... ....++++.++|+++++.... .+.. ..+||||||||+|||
T Consensus 1290 lR~~is~IpQd--p-~LF~GTIR~NLdp~-~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LA 1365 (1490)
T TIGR01271 1290 WRKAFGVIPQK--V-FIFSGTFRKNLDPY-EQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLA 1365 (1490)
T ss_pred HHhceEEEeCC--C-ccCccCHHHHhCcc-cCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHH
Confidence 2345554 3 34678999999543 345678899999998884211 1222 237999999999999
Q ss_pred HHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|||+++|+||||||||++||.++...|++.|++. +.|||+|||+++.+.. ||+|++|++|+++++ |.+.++.+
T Consensus 1366 RALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE~-g~p~~Ll~ 1440 (1490)
T TIGR01271 1366 RSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE-CQQFLVIEGSSVKQY-DSIQKLLN 1440 (1490)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEEe-CCHHHHHc
Confidence 9999999999999999999999999999999865 3599999999999987 999999999999975 66676653
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-67 Score=553.22 Aligned_cols=437 Identities=25% Similarity=0.392 Sum_probs=358.2
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----------ceEE
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-----------~~i~ 164 (645)
..+++++++|.|++..++++|||+|++||++||+|.||||||||+++|.|+++|++|+|.++|+. ..||
T Consensus 3 ~~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIG 82 (501)
T COG3845 3 PALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIG 82 (501)
T ss_pred ceEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCc
Confidence 46999999999999999999999999999999999999999999999999999999999999863 2599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
+|+|++.+.+++||.|||..+.... ....++....++++.++.+
T Consensus 83 MVhQHF~Lv~~lTV~ENiiLg~e~~------------------------------------~~~~~~~~~~~~~i~~l~~ 126 (501)
T COG3845 83 MVHQHFMLVPTLTVAENIILGLEPS------------------------------------KGGLIDRRQARARIKELSE 126 (501)
T ss_pred EEeeccccccccchhhhhhhcCccc------------------------------------cccccCHHHHHHHHHHHHH
Confidence 9999999999999999997443210 0001334456788889999
Q ss_pred hcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHHHHHh
Q 006442 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L---~~~g~tvIivsHd~~~l~~ 321 (645)
.+|++ -..+..+.+||-||||||.|-+||+.+|++|||||||+-|-|...+.|+..| ++.|+|||+|||.++++.+
T Consensus 127 ~yGl~-vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~ 205 (501)
T COG3845 127 RYGLP-VDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMA 205 (501)
T ss_pred HhCCC-CCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHH
Confidence 99997 5678899999999999999999999999999999999999999999998876 4689999999999999999
Q ss_pred hcCeEEEEcCceeEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhh
Q 006442 322 LCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQI 401 (645)
Q Consensus 322 ~~d~i~~l~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~rl~~~~~~ 401 (645)
+|||+.+++.|+.. |.++.. .. ...+++ .++.--..+
T Consensus 206 iaDrvTVLR~Gkvv---gt~~~~-~~-------------~t~~el--------------------------a~lMvG~~v 242 (501)
T COG3845 206 IADRVTVLRRGKVV---GTVDPV-AE-------------TTEEEL--------------------------AELMVGREV 242 (501)
T ss_pred hhCeeEEEeCCeEE---eeecCC-CC-------------CCHHHH--------------------------HHHhcCCcc
Confidence 99999999999863 222100 00 000011 111000001
Q ss_pred cccccccceEEeccCCCCCCCcEEEEEeeeeeeCC-eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeE
Q 006442 402 EKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480 (645)
Q Consensus 402 ~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~-~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~ 480 (645)
..+.. ..+..++++++++++++..-.. ...++++||+|++||++||.|-.|.|.+.|+.+|+|+.+|.+|+
T Consensus 243 ~~~~~--------~~~~~pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~ 314 (501)
T COG3845 243 VLRVV--------KPPSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGR 314 (501)
T ss_pred ccccc--------cCCCCCCCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCce
Confidence 11100 0223467899999999987643 46799999999999999999999999999999999999999999
Q ss_pred EEECceec----cc--------chhccc-hhhcCCCCCCHHHHHHhhhcc-----------c--cHHHHHHHHhhcCCCh
Q 006442 481 VLLGEHNV----LP--------NYFEQN-QAEALDLDKTVLETVAEAAED-----------W--RIDDIKGLLGRCNFKA 534 (645)
Q Consensus 481 i~~~g~~~----~~--------~~~~q~-~~~~l~~~~tv~e~v~~~~~~-----------~--~~~~~~~~L~~~~l~~ 534 (645)
|.++|.++ .+ +|++.+ +...+.+++|+.+|+...... + -.....+++++|++..
T Consensus 315 I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~ 394 (501)
T COG3845 315 ILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRA 394 (501)
T ss_pred EEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccC
Confidence 99999986 11 244433 355678899999998765321 1 1234678899999976
Q ss_pred hhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEE
Q 006442 535 DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVV 611 (645)
Q Consensus 535 ~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~ 611 (645)
.....++.+||||++||+-+||-|.++|++||..+||.|||..+.+.+.+.|.+. +.+||+||-|++++..+||||.
T Consensus 395 ~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIa 474 (501)
T COG3845 395 PSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIA 474 (501)
T ss_pred CCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheee
Confidence 6667889999999999999999999999999999999999999999999988754 5699999999999999999999
Q ss_pred EEeCCeEEe
Q 006442 612 EVKGSNLQD 620 (645)
Q Consensus 612 ~l~~g~i~~ 620 (645)
+|.+|+++.
T Consensus 475 Vi~~Gri~~ 483 (501)
T COG3845 475 VIYEGRIVG 483 (501)
T ss_pred eeeCCceec
Confidence 999999974
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-62 Score=600.40 Aligned_cols=207 Identities=22% Similarity=0.269 Sum_probs=178.7
Q ss_pred cEEEEEeeeeeeCC--eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---------cc
Q 006442 423 SVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PN 491 (645)
Q Consensus 423 ~~i~~~~v~~~y~~--~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------~~ 491 (645)
.+|+++|+++.|++ +.+++++||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|.++. .+
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IG 2015 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMG 2015 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEE
Confidence 36999999999985 57999999999999999999999999999999999999999999999998763 34
Q ss_pred hhccchhhcCCCCCCHHHHHHhhhcc--c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeE
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 565 (645)
|.+|. ..+...+|++|++...... . ..+.+.++|+.+++ .+..++++.+|||||||||+||+||+.+|+||
T Consensus 2016 y~pQ~--~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL-~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VL 2092 (2272)
T TIGR01257 2016 YCPQF--DAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGL-SLYADRLAGTYSGGNKRKLSTAIALIGCPPLV 2092 (2272)
T ss_pred EEecc--ccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-HHHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 55554 3566789999999764221 1 12345678999999 46789999999999999999999999999999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHHHh
Q 006442 566 VLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSLWF 633 (645)
Q Consensus 566 lLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~~~ 633 (645)
||||||+|||+.+++.+.+.|.+. +.|||++||++++++.+|||+++|++|++.. .|+..++.+.+.
T Consensus 2093 LLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~-~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2093 LLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQC-LGTIQHLKSKFG 2162 (2272)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHHHHhC
Confidence 999999999999999999999864 4599999999999999999999999999985 577777655443
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-59 Score=572.99 Aligned_cols=198 Identities=21% Similarity=0.308 Sum_probs=167.3
Q ss_pred cEEEEEeeeeeeC----CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC---CCeeEEEECceecc------
Q 006442 423 SVVTIKNLEFGYE----DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK---PRGGEVLLGEHNVL------ 489 (645)
Q Consensus 423 ~~i~~~~v~~~y~----~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~---p~~G~i~~~g~~~~------ 489 (645)
.+++++||++.|+ .+.+|+|+|++|++||++||+|||||||||||++|+|+.+ |++|+|.++|.++.
T Consensus 758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~ 837 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRS 837 (1394)
T ss_pred ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcc
Confidence 3589999999995 3579999999999999999999999999999999999997 78899999998763
Q ss_pred cchhccchhhcCCCCCCHHHHHHhhhcc-----cc----HHHHHHHHhhcCCChhhhccCcC----cCCHhHHHHHHHHH
Q 006442 490 PNYFEQNQAEALDLDKTVLETVAEAAED-----WR----IDDIKGLLGRCNFKADMLDRKVS----LLSGGEKARLAFCK 556 (645)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~v~~~~~~-----~~----~~~~~~~L~~~~l~~~~~~~~~~----~LSgGqkqrv~lAr 556 (645)
.+|+.|+ +.+.+..||+|++...... .. .+.+.++++.+++. +..++.++ .|||||||||+||+
T Consensus 838 i~yv~Q~--~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~-~~~d~~v~~~~~~LSgGqrqRl~Ia~ 914 (1394)
T TIGR00956 838 IGYVQQQ--DLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME-SYADAVVGVPGEGLNVEQRKRLTIGV 914 (1394)
T ss_pred eeeeccc--ccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-hhCCCeeCCCCCCCCHHHhhHHHHHH
Confidence 2456654 3456789999999865321 11 23467899999994 66787776 79999999999999
Q ss_pred HHccCCC-eEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHH-HHhhCCEEEEEeCC-eEEeeCCC
Q 006442 557 FMVKPST-LLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYF-VKQIVNRVVEVKGS-NLQDYAGD 624 (645)
Q Consensus 557 al~~~p~-lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~-i~~~~d~v~~l~~g-~i~~~~~~ 624 (645)
+|+.+|+ ||+|||||+|||..++..+.+.|++. +.|||+++|+++. +.+.||++++|++| +++.. |+
T Consensus 915 aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~-G~ 987 (1394)
T TIGR00956 915 ELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYF-GD 987 (1394)
T ss_pred HHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEE-CC
Confidence 9999997 99999999999999999999999865 4699999999987 45679999999987 88754 44
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-56 Score=546.49 Aligned_cols=198 Identities=19% Similarity=0.300 Sum_probs=164.4
Q ss_pred EEEEEeeeeeeC-------------CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC--CeeEEEECceec
Q 006442 424 VVTIKNLEFGYE-------------DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP--RGGEVLLGEHNV 488 (645)
Q Consensus 424 ~i~~~~v~~~y~-------------~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p--~~G~i~~~g~~~ 488 (645)
.+.++||++..+ .+.+|+|+|++|++|++++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 488999998763 23699999999999999999999999999999999999763 689999999764
Q ss_pred c-------cchhccchhhcCCCCCCHHHHHHhhhc-----ccc----HHHHHHHHhhcCCChhhhccCc-----CcCCHh
Q 006442 489 L-------PNYFEQNQAEALDLDKTVLETVAEAAE-----DWR----IDDIKGLLGRCNFKADMLDRKV-----SLLSGG 547 (645)
Q Consensus 489 ~-------~~~~~q~~~~~l~~~~tv~e~v~~~~~-----~~~----~~~~~~~L~~~~l~~~~~~~~~-----~~LSgG 547 (645)
. .+|+.|+ +.+.+..||+|++.+... ... .+.+.++++.+++. +..++.+ ..||||
T Consensus 947 ~~~~~~~~igyv~Q~--d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~-~~~~~~vg~~~~~~LSgG 1023 (1470)
T PLN03140 947 KQETFARISGYCEQN--DIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELD-NLKDAIVGLPGVTGLSTE 1023 (1470)
T ss_pred ChHHhhhheEEEccc--cccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCCh-hHhCCccCCCCCCCcCHH
Confidence 2 2456654 346678999999987531 111 23467899999994 5667765 589999
Q ss_pred HHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHH-HHHhhCCEEEEEeC-CeEEeeC
Q 006442 548 EKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRY-FVKQIVNRVVEVKG-SNLQDYA 622 (645)
Q Consensus 548 qkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~-~i~~~~d~v~~l~~-g~i~~~~ 622 (645)
|||||+||++|+.+|+||+|||||+|||..++..+.+.|++. +.|||+++|+++ .+.+.||++++|++ |+++. .
T Consensus 1024 erkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~-~ 1102 (1470)
T PLN03140 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY-S 1102 (1470)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEE-E
Confidence 999999999999999999999999999999999999999865 569999999998 47788999999986 88874 4
Q ss_pred CCh
Q 006442 623 GDY 625 (645)
Q Consensus 623 ~~~ 625 (645)
|+.
T Consensus 1103 G~~ 1105 (1470)
T PLN03140 1103 GPL 1105 (1470)
T ss_pred CCc
Confidence 553
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-52 Score=395.16 Aligned_cols=210 Identities=29% Similarity=0.480 Sum_probs=185.7
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----------ceEEE
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAF 165 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-----------~~i~~ 165 (645)
+|+++|++|+|++..+|++||++|++||+++|+||+|||||||||||.|+.+|++|+|.++|.. .++|+
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGm 81 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGM 81 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCe
Confidence 5899999999999999999999999999999999999999999999999999999999999842 25999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchh
Q 006442 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (645)
Q Consensus 166 v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (645)
|+|++++|+.+||.||++.+.-. ....+..+.+++..++|++
T Consensus 82 VFQ~fnLFPHlTvleNv~lap~~--------------------------------------v~~~~k~eA~~~A~~lL~~ 123 (240)
T COG1126 82 VFQQFNLFPHLTVLENVTLAPVK--------------------------------------VKKLSKAEAREKALELLEK 123 (240)
T ss_pred ecccccccccchHHHHHHhhhHH--------------------------------------HcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999743211 1123445667788899999
Q ss_pred cCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHHHHHhh
Q 006442 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQL 322 (645)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L---~~~g~tvIivsHd~~~l~~~ 322 (645)
+|+. +..+.+|.+|||||||||||||||+.+|+++|+|||||+|||+....+.+.+ .+.|.|+|+|||++.|+.++
T Consensus 124 VGL~-~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 124 VGLA-DKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred cCch-hhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHh
Confidence 9997 6789999999999999999999999999999999999999999999888765 56799999999999999999
Q ss_pred cCeEEEEcCceeEEeccChHHHHH
Q 006442 323 CTKIVETEMGVSRTYEGNYSQYVL 346 (645)
Q Consensus 323 ~d~i~~l~~G~~~~~~g~~~~~~~ 346 (645)
+|||++|++|++. -.|+.++++.
T Consensus 203 adrviFmd~G~ii-e~g~p~~~f~ 225 (240)
T COG1126 203 ADRVIFMDQGKII-EEGPPEEFFD 225 (240)
T ss_pred hheEEEeeCCEEE-EecCHHHHhc
Confidence 9999999999874 3456555544
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-50 Score=417.10 Aligned_cols=434 Identities=26% Similarity=0.397 Sum_probs=285.3
Q ss_pred eEEEEeCCe-eeeeeeeE-EEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCCCCCHH
Q 006442 102 NISKSYKGV-TVLKDVTW-EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVR 179 (645)
Q Consensus 102 nls~~y~~~-~vL~~vsl-~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~Tv~ 179 (645)
++.-+|+.. ..|- .| ...+|+++||+|+||-||||-+++|+|++.|.=|+.- .| +-|
T Consensus 79 e~vHRYg~NgFkL~--~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~-------------~p------p~w 137 (591)
T COG1245 79 EVVHRYGVNGFKLY--RLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYE-------------DP------PSW 137 (591)
T ss_pred cceeeccCCceEEe--cCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCC-------------CC------CCH
Confidence 456777543 1222 22 4568999999999999999999999999999766421 11 113
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhc----cchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccc
Q 006442 180 EEFMSAFKEEMEIAGKLERVQKALESA----VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (645)
Q Consensus 180 eni~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~ 255 (645)
|++...|... .++.+.+.+..- ......++.+...+.- ...+.+....-.-..+++.+.+++. ...+|
T Consensus 138 deVi~~FrGt-----ELq~YF~~l~~g~~r~v~K~QYVd~iPk~~KG--~v~elLk~~de~g~~devve~l~L~-nvl~r 209 (591)
T COG1245 138 DEVIKRFRGT-----ELQNYFKKLYEGELRAVHKPQYVDLIPKVVKG--KVGELLKKVDERGKFDEVVERLGLE-NVLDR 209 (591)
T ss_pred HHHHHHhhhh-----HHHHHHHHHHcCCcceecchHHHHHHHHHhcc--hHHHHHHhhhhcCcHHHHHHHhcch-hhhhh
Confidence 3433222210 011111111000 0000111111000000 0000000001112456778888986 68899
Q ss_pred cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCeEEEEc--
Q 006442 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETE-- 330 (645)
Q Consensus 256 ~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d~i~~l~-- 330 (645)
.+.+|||||.||+|||.++++++|++++|||+|.||...+-...+.++ +.+++||+|.||+..++.++|.|.++-
T Consensus 210 ~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG~ 289 (591)
T COG1245 210 DVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYGE 289 (591)
T ss_pred hhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEecC
Confidence 999999999999999999999999999999999999988766555443 348999999999999999999887763
Q ss_pred CceeEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhhcccccccce
Q 006442 331 MGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQM 410 (645)
Q Consensus 331 ~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~rl~~~~~~~~~~~~~~~ 410 (645)
.|.-......++. + ..+..+ |.+. +.+++ ....+...
T Consensus 290 pg~YGvvs~p~sv----r-~gIN~y--------------------L~Gy---------------l~~EN---~R~R~~~I 326 (591)
T COG1245 290 PGVYGVVSKPKSV----R-VGINEY--------------------LKGY---------------LPEEN---VRFRPEEI 326 (591)
T ss_pred CccceEeccchHH----H-HHHHHH--------------------Hhcc---------------Cchhc---ccccccce
Confidence 2221111122110 0 000000 0000 00000 00011122
Q ss_pred EEec-cCCCCCC-CcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceec
Q 006442 411 KIRF-PERGRSG-RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (645)
Q Consensus 411 ~~~~-p~~~~~~-~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~ 488 (645)
.|.. ++..... +.+++..++.+.|++.. |.--.=+|..||+++++||||.||||+.++|+|.++|++|. ..++
T Consensus 327 ~F~~~~~~~~~~~~~lv~y~~~~k~~g~F~-L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~ 401 (591)
T COG1245 327 EFEEKPPRDDKARDTLVEYPDLKKTYGDFK-LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL 401 (591)
T ss_pred eeeccCcccccccceeeecchheeecCceE-EEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc
Confidence 2221 1122222 56677788888887432 33333456778999999999999999999999999999998 3345
Q ss_pred ccchhccchhhcCCCCCCHHHHHHhhhcc-cc-HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEE
Q 006442 489 LPNYFEQNQAEALDLDKTVLETVAEAAED-WR-IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (645)
Q Consensus 489 ~~~~~~q~~~~~l~~~~tv~e~v~~~~~~-~~-~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 566 (645)
+..|-+|...+ .++.||.+.+...... +. .....++++.+++ .+..++++..|||||.|||+||.+|.++++|.|
T Consensus 402 ~vSyKPQyI~~--~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l-~~i~e~~v~~LSGGELQRvaIaa~L~reADlYl 478 (591)
T COG1245 402 KVSYKPQYISP--DYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNL-EDLLERPVDELSGGELQRVAIAAALSREADLYL 478 (591)
T ss_pred eEeecceeecC--CCCCcHHHHHHHhhhhhcccchhHHhhcCccch-HHHHhcccccCCchhHHHHHHHHHhccccCEEE
Confidence 55666665433 3578999888765432 22 1224467778888 578899999999999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeC
Q 006442 567 LDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKG 615 (645)
Q Consensus 567 LDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~ 615 (645)
||||+++||.+.+-.+.++|+.+ ++|.++|-||+.++.-++||++++++
T Consensus 479 lDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 479 LDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred ecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 99999999999999888888865 46999999999999999999999973
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-50 Score=383.57 Aligned_cols=205 Identities=29% Similarity=0.424 Sum_probs=182.5
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----------cc
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PN 491 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~~ 491 (645)
++|+++|++++||+..+|+|||++|.+||+++|+||||||||||||||.++.+|++|+|.++|.++. .+
T Consensus 1 ~mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 1 MMIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred CeEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence 3699999999999999999999999999999999999999999999999999999999999997542 23
Q ss_pred hhccchhhcCCCCCCHHHHHHhhhc-------cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCe
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAAE-------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~~-------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 564 (645)
+++|+ .++++.+||.+|+..+.. ....+.+.++|+++|+ .+..+.+|.+|||||||||||||||+.+|++
T Consensus 81 mVFQ~--fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL-~~ka~~yP~qLSGGQqQRVAIARALaM~P~v 157 (240)
T COG1126 81 MVFQQ--FNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGL-ADKADAYPAQLSGGQQQRVAIARALAMDPKV 157 (240)
T ss_pred eeccc--ccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCc-hhhhhhCccccCcHHHHHHHHHHHHcCCCCE
Confidence 45554 679999999999987642 1223457889999999 5788999999999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHH
Q 006442 565 LVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSL 631 (645)
Q Consensus 565 LlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~ 631 (645)
+|+|||||+|||+....+.+.+++. +-|.|+|||++.|+.+++|||++|++|++++. |+.++++..
T Consensus 158 mLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~-g~p~~~f~~ 226 (240)
T COG1126 158 MLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEE-GPPEEFFDN 226 (240)
T ss_pred EeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEe-cCHHHHhcC
Confidence 9999999999999999999988865 45999999999999999999999999999864 577777643
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-49 Score=385.60 Aligned_cols=196 Identities=30% Similarity=0.427 Sum_probs=174.7
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----ceEEEEeccCc
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEFE 171 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-----~~i~~v~Q~~~ 171 (645)
.+.++++++.|++..+|+|+||+|.+||+++||||||||||||||+|+|+.+|++|+|.++|.. ..++||+|++.
T Consensus 3 ~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~ 82 (248)
T COG1116 3 LLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDA 82 (248)
T ss_pred eEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCc
Confidence 5899999999999999999999999999999999999999999999999999999999998753 47999999999
Q ss_pred cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcc
Q 006442 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (645)
Q Consensus 172 ~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~ 251 (645)
+++..||+||+..+.... .....+.++++.++|+.+|+. .
T Consensus 83 LlPW~Tv~~NV~l~l~~~---------------------------------------~~~~~e~~~~a~~~L~~VgL~-~ 122 (248)
T COG1116 83 LLPWLTVLDNVALGLELR---------------------------------------GKSKAEARERAKELLELVGLA-G 122 (248)
T ss_pred ccchhhHHhhheehhhcc---------------------------------------ccchHhHHHHHHHHHHHcCCc-c
Confidence 999999999996443210 012223445778899999997 6
Q ss_pred cccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhhcCeEE
Q 006442 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCTKIV 327 (645)
Q Consensus 252 ~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L----~~~g~tvIivsHd~~~l~~~~d~i~ 327 (645)
..++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.| ++.++|||+||||++++-.++|||+
T Consensus 123 ~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRiv 202 (248)
T COG1116 123 FEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVV 202 (248)
T ss_pred hhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEE
Confidence 889999999999999999999999999999999999999999998887654 5678999999999999999999999
Q ss_pred EEcCc
Q 006442 328 ETEMG 332 (645)
Q Consensus 328 ~l~~G 332 (645)
+|.++
T Consensus 203 vl~~~ 207 (248)
T COG1116 203 VLSNR 207 (248)
T ss_pred EecCC
Confidence 99985
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-49 Score=381.32 Aligned_cols=210 Identities=27% Similarity=0.417 Sum_probs=186.2
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc----------eEEEE
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~----------~i~~v 166 (645)
+|+++|++|.|+++++++|+||+|++||+++++||+||||||+||+|.++++|++|+|.++|.+. +||||
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 48999999999999999999999999999999999999999999999999999999999998643 69999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhc
Q 006442 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (645)
Q Consensus 167 ~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (645)
-|...+++++||.|||...-. ....+...+++++.++|..+
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~---------------------------------------L~~w~k~~i~~r~~ELl~lv 121 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPK---------------------------------------LLGWDKERIKKRADELLDLV 121 (309)
T ss_pred hhhcccCCCccHHHHHHhhhh---------------------------------------hcCCCHHHHHHHHHHHHHHh
Confidence 999999999999999963210 01123446678899999999
Q ss_pred CCCc-ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHh
Q 006442 247 GFTA-DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 247 gl~~-~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L----~~~g~tvIivsHd~~~l~~ 321 (645)
|+++ ++.+|++++|||||+|||.+||||+.+|+||||||||++|||.++..|.+.+ ++.++|||+||||++++..
T Consensus 122 gL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~k 201 (309)
T COG1125 122 GLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALK 201 (309)
T ss_pred CCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHh
Confidence 9976 5999999999999999999999999999999999999999999999998765 3579999999999999999
Q ss_pred hcCeEEEEcCceeEEeccChHHHHH
Q 006442 322 LCTKIVETEMGVSRTYEGNYSQYVL 346 (645)
Q Consensus 322 ~~d~i~~l~~G~~~~~~g~~~~~~~ 346 (645)
++|||++|++|++..| ++....+.
T Consensus 202 Ladri~vm~~G~i~Q~-~~P~~il~ 225 (309)
T COG1125 202 LADRIAVMDAGEIVQY-DTPDEILA 225 (309)
T ss_pred hhceEEEecCCeEEEe-CCHHHHHh
Confidence 9999999999998655 44444443
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=384.22 Aligned_cols=207 Identities=33% Similarity=0.537 Sum_probs=183.9
Q ss_pred cEEEEeEEEEeCC-----eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----------
Q 006442 97 GVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (645)
Q Consensus 97 ~i~i~nls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------- 160 (645)
+|++++++|.|.. ..+|+||||+|++||++||||.+|||||||+|+|.++..|++|+|.++|.+
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 4899999999975 359999999999999999999999999999999999999999999999843
Q ss_pred --ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHH
Q 006442 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (645)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (645)
.+|||+||++.+....||++|+...+. ....+..+++++
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLe---------------------------------------iag~~k~ei~~R 121 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLE---------------------------------------LAGVPKAEIKQR 121 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHh---------------------------------------hcCCCHHHHHHH
Confidence 369999999999889999999963321 012345577889
Q ss_pred HHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEec
Q 006442 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISH 314 (645)
Q Consensus 239 i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsH 314 (645)
+.++|+.+|++ +..++++.+|||||||||+|||||+.+|+|||.|||||+|||++.+.+.++|+ +.|.||++|||
T Consensus 122 V~elLelVgL~-dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITH 200 (339)
T COG1135 122 VAELLELVGLS-DKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITH 200 (339)
T ss_pred HHHHHHHcCCh-hhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 99999999998 78999999999999999999999999999999999999999999999988874 47999999999
Q ss_pred CHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 315 d~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
.++.+.++|||+++|++|++. -.|...+.
T Consensus 201 Em~Vvk~ic~rVavm~~G~lv-E~G~v~~v 229 (339)
T COG1135 201 EMEVVKRICDRVAVLDQGRLV-EEGTVSEV 229 (339)
T ss_pred hHHHHHHHhhhheEeeCCEEE-EeccHHHh
Confidence 999999999999999999984 44554443
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-47 Score=369.18 Aligned_cols=218 Identities=23% Similarity=0.406 Sum_probs=188.6
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc-------------
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------- 161 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~------------- 161 (645)
.+.|++++++++|+++.+++||||+|++||+++|+||+|||||||||+|.|+++|++|+|.+.|.+.
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 4579999999999999999999999999999999999999999999999999999999999988643
Q ss_pred eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHh
Q 006442 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (645)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (645)
++|+++|.-.+|.++||+||+...+.+. ..++...+++.+..
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~--------------------------------------~~lp~~~i~~lv~~ 127 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREH--------------------------------------TKLPESLIRELVLM 127 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhh--------------------------------------ccCCHHHHHHHHHH
Confidence 5999999999999999999996433221 12333345555666
Q ss_pred hchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHH
Q 006442 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (645)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~ 317 (645)
-|+.+|+.....++.+.+|||||++|++||||++.+|++|++||||+||||.+...+.++++ +.|.|+|+||||++
T Consensus 128 KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~ 207 (263)
T COG1127 128 KLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD 207 (263)
T ss_pred HHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH
Confidence 68889998777999999999999999999999999999999999999999999887776653 46999999999999
Q ss_pred HHHhhcCeEEEEcCceeEEeccChHHHHHHHHHH
Q 006442 318 FLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAW 351 (645)
Q Consensus 318 ~l~~~~d~i~~l~~G~~~~~~g~~~~~~~~~~~~ 351 (645)
.+..+||+|+++.+|++ .+.|+.++.......|
T Consensus 208 s~~~i~Drv~~L~~gkv-~~~Gt~~el~~sd~P~ 240 (263)
T COG1127 208 SLLTIADRVAVLADGKV-IAEGTPEELLASDDPW 240 (263)
T ss_pred HHHhhhceEEEEeCCEE-EEeCCHHHHHhCCCHH
Confidence 99999999999999998 6789887765544333
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=375.72 Aligned_cols=212 Identities=27% Similarity=0.417 Sum_probs=176.9
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-------ceEEEEec
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIAFLSQ 168 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-------~~i~~v~Q 168 (645)
+.|+++|++++|++.++|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+.+ .+||||||
T Consensus 3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ 82 (254)
T COG1121 3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQ 82 (254)
T ss_pred cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCc
Confidence 46999999999997689999999999999999999999999999999999999999999987653 47999999
Q ss_pred cCc--cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhc
Q 006442 169 EFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (645)
Q Consensus 169 ~~~--~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (645)
... ..+..||+|-+..+......... .... .-.+.+.++|+.+
T Consensus 83 ~~~~d~~fP~tV~d~V~~g~~~~~g~~~----------------------------------~~~~-~d~~~v~~aL~~V 127 (254)
T COG1121 83 KSSVDRSFPITVKDVVLLGRYGKKGWFR----------------------------------RLNK-KDKEKVDEALERV 127 (254)
T ss_pred ccccCCCCCcCHHHHHHccCcccccccc----------------------------------cccH-HHHHHHHHHHHHc
Confidence 653 33567999988643211100000 0111 1146788899999
Q ss_pred CCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhc
Q 006442 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLC 323 (645)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~ 323 (645)
|+. ++.++++.+|||||+|||.|||||+++|++|||||||+|+|+.++..+.++|+ +.|+||++||||+..+.++|
T Consensus 128 gm~-~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~ 206 (254)
T COG1121 128 GME-DLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYF 206 (254)
T ss_pred Cch-hhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhC
Confidence 997 79999999999999999999999999999999999999999999999988874 45999999999999999999
Q ss_pred CeEEEEcCceeEEeccChHHHH
Q 006442 324 TKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 324 d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
|+|+.++... .+.|+..+..
T Consensus 207 D~vi~Ln~~~--~~~G~~~~~~ 226 (254)
T COG1121 207 DRVICLNRHL--IASGPPEEVL 226 (254)
T ss_pred CEEEEEcCee--EeccChhhcc
Confidence 9999997654 3567655543
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=365.89 Aligned_cols=203 Identities=28% Similarity=0.473 Sum_probs=181.7
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------cchh
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYF 493 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~~ 493 (645)
||+++||++.|+++.+++++||+|+.||+++++|||||||||+||+|.++++|++|+|.++|.++. .+|+
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 589999999999999999999999999999999999999999999999999999999999998863 4677
Q ss_pred ccchhhcCCCCCCHHHHHHhhhc--cccH----HHHHHHHhhcCCCh-hhhccCcCcCCHhHHHHHHHHHHHccCCCeEE
Q 006442 494 EQNQAEALDLDKTVLETVAEAAE--DWRI----DDIKGLLGRCNFKA-DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (645)
Q Consensus 494 ~q~~~~~l~~~~tv~e~v~~~~~--~~~~----~~~~~~L~~~~l~~-~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 566 (645)
-|. ..++|.+||.+|+..... .|.. +++.++|+.+|+.+ ++.+++|++|||||||||.+||||+.+|+|||
T Consensus 81 iQq--igLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilL 158 (309)
T COG1125 81 IQQ--IGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILL 158 (309)
T ss_pred hhh--cccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEe
Confidence 654 478999999999987543 3443 45788999999975 58899999999999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 567 LDEPTNHLDIPSKEMLEEAISE----YKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 567 LDEPt~~LD~~s~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
||||+++|||-++..+++.+.+ +++|||+||||++++..++|||.+|++|+++.+ +.+++++
T Consensus 159 MDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~-~~P~~il 224 (309)
T COG1125 159 MDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQY-DTPDEIL 224 (309)
T ss_pred ecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEe-CCHHHHH
Confidence 9999999999999999988764 578999999999999999999999999999976 4444443
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-46 Score=375.08 Aligned_cols=210 Identities=27% Similarity=0.416 Sum_probs=178.0
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc----------eEEEE
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~----------~i~~v 166 (645)
.++++|++++|+++++++|+||+|++|++++|+||||||||||||+|+|+++|.+|+|.++|.+. .+|||
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~v 81 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYV 81 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEe
Confidence 48999999999999999999999999999999999999999999999999999999999998643 69999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhc
Q 006442 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (645)
Q Consensus 167 ~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (645)
||.+...+..||+|-+..+-..... |. .....+-++.+.+.|+.+
T Consensus 82 pQ~~~~~~~~tV~d~V~~GR~p~~~---------------------------------~~--~~~~~~D~~~v~~aL~~~ 126 (258)
T COG1120 82 PQSPSAPFGLTVYELVLLGRYPHLG---------------------------------LF--GRPSKEDEEIVEEALELL 126 (258)
T ss_pred ccCCCCCCCcEEeehHhhcCCcccc---------------------------------cc--cCCCHhHHHHHHHHHHHh
Confidence 9999887889999988532110000 00 000111123567788899
Q ss_pred CCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhh
Q 006442 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQL 322 (645)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~ 322 (645)
|+. ++.+|++.+|||||||||.|||||+++|+||||||||++||......+.++++ +.|.|||+|.||++++.++
T Consensus 127 ~~~-~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ry 205 (258)
T COG1120 127 GLE-HLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARY 205 (258)
T ss_pred CcH-HHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence 996 78999999999999999999999999999999999999999999988888764 4689999999999999999
Q ss_pred cCeEEEEcCceeEEeccChHH
Q 006442 323 CTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 323 ~d~i~~l~~G~~~~~~g~~~~ 343 (645)
||+++.|++|++. ..|...+
T Consensus 206 ad~~i~lk~G~i~-a~G~p~e 225 (258)
T COG1120 206 ADHLILLKDGKIV-AQGTPEE 225 (258)
T ss_pred CCEEEEEECCeEE-eecCcch
Confidence 9999999999984 5565443
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-46 Score=390.38 Aligned_cols=214 Identities=29% Similarity=0.440 Sum_probs=187.7
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------ceEEEEe
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLS 167 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------~~i~~v~ 167 (645)
+.|+++|++++|++..+++|+||+|++||+++|+||||||||||||+|+|+..|++|+|.++|.+ ..||+|+
T Consensus 4 ~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VF 83 (352)
T COG3842 4 PALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVF 83 (352)
T ss_pred ceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceee
Confidence 46999999999999999999999999999999999999999999999999999999999998753 3699999
Q ss_pred ccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcC
Q 006442 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (645)
Q Consensus 168 Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg 247 (645)
|+..+|+.+||+|||..++... ......++.+++.++|+.++
T Consensus 84 Q~YALFPHltV~~NVafGLk~~--------------------------------------~~~~~~~i~~rv~e~L~lV~ 125 (352)
T COG3842 84 QSYALFPHMTVEENVAFGLKVR--------------------------------------KKLKKAEIKARVEEALELVG 125 (352)
T ss_pred cCcccCCCCcHHHHhhhhhhhc--------------------------------------CCCCHHHHHHHHHHHHHHcC
Confidence 9999999999999997543210 01122345678889999999
Q ss_pred CCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhhc
Q 006442 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLC 323 (645)
Q Consensus 248 l~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L----~~~g~tvIivsHd~~~l~~~~ 323 (645)
+. +..+|++.+|||||||||||||||+.+|++||||||+|+||..-+..+...| ++.|.|.|+||||.+++..++
T Consensus 126 L~-~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~ms 204 (352)
T COG3842 126 LE-GFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMS 204 (352)
T ss_pred ch-hhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhc
Confidence 97 6899999999999999999999999999999999999999999888776544 567999999999999999999
Q ss_pred CeEEEEcCceeEEeccChHHHHHHHH
Q 006442 324 TKIVETEMGVSRTYEGNYSQYVLEKA 349 (645)
Q Consensus 324 d~i~~l~~G~~~~~~g~~~~~~~~~~ 349 (645)
|||++|++|++ ...|+..+.|....
T Consensus 205 DrI~Vm~~G~I-~Q~gtP~eiY~~P~ 229 (352)
T COG3842 205 DRIAVMNDGRI-EQVGTPEEIYERPA 229 (352)
T ss_pred cceEEccCCce-eecCCHHHHhhCcc
Confidence 99999999998 45677777666543
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=363.13 Aligned_cols=197 Identities=28% Similarity=0.463 Sum_probs=169.6
Q ss_pred EEEEeEEEEeCC----eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-------------
Q 006442 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------- 160 (645)
Q Consensus 98 i~i~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~------------- 160 (645)
++++|+++.|+. ..+|+++||+|++||+++|+||+||||||||++|.|+.+|++|.|.++|.+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 679999999954 369999999999999999999999999999999999999999999998742
Q ss_pred -ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHH
Q 006442 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (645)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (645)
..|||++|++.+.+.+||.||+.....- .........+++
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~---------------------------------------~~~~~~~~~~~~ 122 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLI---------------------------------------AGKSAGRRKRAA 122 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHH---------------------------------------cCCChhHHHHHH
Confidence 2599999999999999999999632110 001111234567
Q ss_pred HhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecC
Q 006442 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHD 315 (645)
Q Consensus 240 ~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd 315 (645)
.++++.+|+.....++++.+|||||||||||||||+.+|++||.||||.+||.++.+.+.++|+ +.|+|||+||||
T Consensus 123 ~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd 202 (226)
T COG1136 123 EELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHD 202 (226)
T ss_pred HHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 7888899997555558899999999999999999999999999999999999999999988874 458999999999
Q ss_pred HHHHHhhcCeEEEEcCcee
Q 006442 316 RAFLDQLCTKIVETEMGVS 334 (645)
Q Consensus 316 ~~~l~~~~d~i~~l~~G~~ 334 (645)
.+.+. .|||++.+.+|++
T Consensus 203 ~~lA~-~~dr~i~l~dG~~ 220 (226)
T COG1136 203 PELAK-YADRVIELKDGKI 220 (226)
T ss_pred HHHHH-hCCEEEEEeCCee
Confidence 99887 7999999999984
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=368.48 Aligned_cols=205 Identities=31% Similarity=0.504 Sum_probs=180.5
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceec-------ccchhcc
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPNYFEQ 495 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~-------~~~~~~q 495 (645)
++|+++|+++.|+++++|+|+||+|++|++++|+||||||||||+|+|+|+++|.+|+|.+.|.++ ..+|++|
T Consensus 3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ 82 (254)
T COG1121 3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQ 82 (254)
T ss_pred cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCc
Confidence 469999999999866899999999999999999999999999999999999999999999988643 4689999
Q ss_pred chhhcCCCCCCHHHHHHhhhcc----------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeE
Q 006442 496 NQAEALDLDKTVLETVAEAAED----------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (645)
Q Consensus 496 ~~~~~l~~~~tv~e~v~~~~~~----------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 565 (645)
.......+..||+|.+..+... ...+.+.++|+++|+. +..++++++|||||+|||.|||||+++|++|
T Consensus 83 ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-~~~~r~i~~LSGGQ~QRV~lARAL~~~p~ll 161 (254)
T COG1121 83 KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-DLRDRQIGELSGGQKQRVLLARALAQNPDLL 161 (254)
T ss_pred ccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-hhhCCcccccCcHHHHHHHHHHHhccCCCEE
Confidence 7655667889999999986321 1236789999999994 8999999999999999999999999999999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 566 VLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 566 lLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
||||||+|+|+.++..+.++|.+. +.|||+||||+..+..+||+|+.|++.-+. .|+.++.++
T Consensus 162 lLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~~~--~G~~~~~~~ 227 (254)
T COG1121 162 LLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIA--SGPPEEVLT 227 (254)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCeeEe--ccChhhccC
Confidence 999999999999999999999765 569999999999999999999999755443 466665543
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-46 Score=371.77 Aligned_cols=202 Identities=32% Similarity=0.518 Sum_probs=179.4
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------cchh
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYF 493 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~~ 493 (645)
+++++|++++|+++++++|+||+|++||+++|+||||||||||||+|+|+++|.+|+|.++|.++. .+|+
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~v 81 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYV 81 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEe
Confidence 589999999999999999999999999999999999999999999999999999999999998763 3577
Q ss_pred ccchhhcCCCCCCHHHHHHhhhc-------cccH---HHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCC
Q 006442 494 EQNQAEALDLDKTVLETVAEAAE-------DWRI---DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (645)
Q Consensus 494 ~q~~~~~l~~~~tv~e~v~~~~~-------~~~~---~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 563 (645)
+|.. ...+..||+|.|..+.. .++. +.+..+|+.+|+ .++.++.+.+|||||||||.|||||+++|+
T Consensus 82 pQ~~--~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~-~~la~r~~~~LSGGerQrv~iArALaQ~~~ 158 (258)
T COG1120 82 PQSP--SAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGL-EHLADRPVDELSGGERQRVLIARALAQETP 158 (258)
T ss_pred ccCC--CCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCc-HHHhcCcccccChhHHHHHHHHHHHhcCCC
Confidence 7764 45578899999988742 1222 247788999999 588999999999999999999999999999
Q ss_pred eEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 564 LLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 564 lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
+|+|||||++||+.++-.+++.++++ +.|||+|.||++.+.++||++++|++|++... |..++.+
T Consensus 159 iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~-G~p~evl 227 (258)
T COG1120 159 ILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQ-GTPEEVL 227 (258)
T ss_pred EEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEee-cCcchhc
Confidence 99999999999999999999999865 36999999999999999999999999999864 6655543
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-46 Score=384.99 Aligned_cols=210 Identities=29% Similarity=0.433 Sum_probs=184.4
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------ceEEEEec
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------~~i~~v~Q 168 (645)
.|+++|++|+|++..+++++||+|++||+++|+||||||||||||+|+|+.+|++|+|.++|.. ..||||||
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ 82 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQ 82 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeC
Confidence 5999999999988769999999999999999999999999999999999999999999998753 36999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCC
Q 006442 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (645)
Q Consensus 169 ~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (645)
++.+++.+||+||+..+++. ..++..++++++++..+.|++
T Consensus 83 ~yALyPhmtV~~Niaf~Lk~---------------------------------------~~~~k~ei~~rV~eva~~L~l 123 (338)
T COG3839 83 NYALYPHMTVYENIAFGLKL---------------------------------------RGVPKAEIDKRVKEVAKLLGL 123 (338)
T ss_pred CccccCCCcHHHHhhhhhhh---------------------------------------CCCchHHHHHHHHHHHHHcCC
Confidence 99999999999999744321 123345677889999999999
Q ss_pred CcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhhcC
Q 006442 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCT 324 (645)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L----~~~g~tvIivsHd~~~l~~~~d 324 (645)
. ++++|.+.+|||||||||||||||+.+|+++|||||+|+||+..+..+...+ ++.|.|+|+||||..++..++|
T Consensus 124 ~-~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtlad 202 (338)
T COG3839 124 E-HLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLAD 202 (338)
T ss_pred h-hHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCC
Confidence 7 7899999999999999999999999999999999999999999877776554 4578999999999999999999
Q ss_pred eEEEEcCceeEEeccChHHHHHH
Q 006442 325 KIVETEMGVSRTYEGNYSQYVLE 347 (645)
Q Consensus 325 ~i~~l~~G~~~~~~g~~~~~~~~ 347 (645)
||++|++|++. ..|...+.|.+
T Consensus 203 ri~Vm~~G~i~-Q~g~p~ely~~ 224 (338)
T COG3839 203 RIVVMNDGRIQ-QVGTPLELYER 224 (338)
T ss_pred EEEEEeCCeee-ecCChHHHhhC
Confidence 99999999984 44555555443
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-46 Score=364.76 Aligned_cols=191 Identities=36% Similarity=0.507 Sum_probs=172.2
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceec-----ccchhccch
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----LPNYFEQNQ 497 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~-----~~~~~~q~~ 497 (645)
.+++++++++.|++..+|+|+||+|.+||+++|+|||||||||||++|+|+.+|++|+|.++|..+ ..+|++|+
T Consensus 2 ~~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~- 80 (248)
T COG1116 2 ALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQE- 80 (248)
T ss_pred ceEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEecc-
Confidence 358999999999999999999999999999999999999999999999999999999999999865 23567765
Q ss_pred hhcCCCCCCHHHHHHhhhccc------cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCC
Q 006442 498 AEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571 (645)
Q Consensus 498 ~~~l~~~~tv~e~v~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt 571 (645)
+.+.+..||++||..+.... ..+.+.++|+.+|+. +..+++|++|||||||||+|||||+.+|+||+||||+
T Consensus 81 -~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~-~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPF 158 (248)
T COG1116 81 -DALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLA-GFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPF 158 (248)
T ss_pred -CcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCc-chhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 46889999999998875431 234688999999994 7889999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHh----cCceEEEEecCHHHHHhhCCEEEEEeCC
Q 006442 572 NHLDIPSKEMLEEAISE----YKGTVITVSHDRYFVKQIVNRVVEVKGS 616 (645)
Q Consensus 572 ~~LD~~s~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~d~v~~l~~g 616 (645)
++||.-++..|++.+.+ .+.|||+||||.+++..++|||++|.++
T Consensus 159 gALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 159 GALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred chhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 99999999999987754 4679999999999999999999999983
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-46 Score=372.18 Aligned_cols=211 Identities=29% Similarity=0.453 Sum_probs=183.5
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCC-----------CceEEE
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS-----------NMKIAF 165 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~-----------~~~i~~ 165 (645)
+|.++|+++.|+...+++|||++|+.||.+||.||||||||||||+|+|+..|++|.|.+++. ..+|||
T Consensus 2 ~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGf 81 (345)
T COG1118 2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGF 81 (345)
T ss_pred ceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeE
Confidence 489999999999999999999999999999999999999999999999999999999999876 236999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchh
Q 006442 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (645)
Q Consensus 166 v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (645)
|+|++.+++.+||.+||..+..-. ....+...++.++.++|..
T Consensus 82 vFQ~YALF~HmtVa~NIAFGl~~~-------------------------------------~~~p~~~~~r~rv~elL~l 124 (345)
T COG1118 82 VFQHYALFPHMTVADNIAFGLKVR-------------------------------------KERPSEAEIRARVEELLRL 124 (345)
T ss_pred EEechhhcccchHHhhhhhccccc-------------------------------------ccCCChhhHHHHHHHHHHH
Confidence 999999999999999997543210 0012234567788889999
Q ss_pred cCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHh
Q 006442 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L----~~~g~tvIivsHd~~~l~~ 321 (645)
+.++ ...++++.+|||||||||||||||+.+|++||||||+++||+.-+..|..+| .+.|.|+|+||||.+++.+
T Consensus 125 vqL~-~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ 203 (345)
T COG1118 125 VQLE-GLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALE 203 (345)
T ss_pred hccc-chhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHh
Confidence 9986 6899999999999999999999999999999999999999999887777665 4569999999999999999
Q ss_pred hcCeEEEEcCceeEEeccChHHHHH
Q 006442 322 LCTKIVETEMGVSRTYEGNYSQYVL 346 (645)
Q Consensus 322 ~~d~i~~l~~G~~~~~~g~~~~~~~ 346 (645)
+||||++|++|++. ..|+..+.+.
T Consensus 204 ladrvvvl~~G~Ie-qvg~p~ev~~ 227 (345)
T COG1118 204 LADRVVVLNQGRIE-QVGPPDEVYD 227 (345)
T ss_pred hcceEEEecCCeee-eeCCHHHHhc
Confidence 99999999999983 4566555443
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=358.54 Aligned_cols=200 Identities=28% Similarity=0.499 Sum_probs=175.2
Q ss_pred ccEEEEeEEEEeCCee----eeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCC-----------C
Q 006442 96 SGVKLENISKSYKGVT----VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS-----------N 160 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~----vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~-----------~ 160 (645)
++|+++|+++.|+... +|++|||+|.+||++||+|++|||||||+++|+|+.+|++|+|.++|. .
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 4699999999998876 999999999999999999999999999999999999999999999984 2
Q ss_pred ceEEEEeccCc--cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHH
Q 006442 161 MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (645)
Q Consensus 161 ~~i~~v~Q~~~--~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (645)
..|-+|||+|. +.+..||++-+...+.. ......+++
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~-----------------------------------------~~~~~~~~~ 120 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRP-----------------------------------------HGLSKSQQR 120 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhcc-----------------------------------------CCccHHHHH
Confidence 35999999994 55667887766432210 111233455
Q ss_pred HHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEec
Q 006442 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISH 314 (645)
Q Consensus 239 i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsH 314 (645)
+.++|+.+|+++..++|.+.+|||||+|||||||||..+|++||||||||+||+.....+.++|. +++.|.|+|||
T Consensus 121 i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsH 200 (252)
T COG1124 121 IAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISH 200 (252)
T ss_pred HHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeC
Confidence 88999999999999999999999999999999999999999999999999999999999988873 47899999999
Q ss_pred CHHHHHhhcCeEEEEcCceeEE
Q 006442 315 DRAFLDQLCTKIVETEMGVSRT 336 (645)
Q Consensus 315 d~~~l~~~~d~i~~l~~G~~~~ 336 (645)
|+..+..+||||++|++|.+..
T Consensus 201 dl~~v~~~cdRi~Vm~~G~ivE 222 (252)
T COG1124 201 DLALVEHMCDRIAVMDNGQIVE 222 (252)
T ss_pred cHHHHHHHhhheeeeeCCeEEE
Confidence 9999999999999999998743
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=368.83 Aligned_cols=202 Identities=29% Similarity=0.408 Sum_probs=178.2
Q ss_pred EEEEEeeeeeeCC-----eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---------
Q 006442 424 VVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~-----~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------- 489 (645)
||++++|++.|+. ..+++|+||+|++||++||+|+||+|||||+|+|.++.+|++|+|.++|.++.
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 5899999999975 36899999999999999999999999999999999999999999999998763
Q ss_pred ----cchhccchhhcCCCCCCHHHHHHhhhcc------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHc
Q 006442 490 ----PNYFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV 559 (645)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~v~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~ 559 (645)
.++++|+ .++..+.||++|+++.... ...+++.++|+.+|+. +..+++|.+|||||||||+|||||+
T Consensus 81 ~R~~IGMIFQh--FnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~-dk~~~yP~qLSGGQKQRVaIARALa 157 (339)
T COG1135 81 LRQKIGMIFQH--FNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLS-DKADRYPAQLSGGQKQRVAIARALA 157 (339)
T ss_pred HHhhccEEecc--ccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCCh-hhhccCchhcCcchhhHHHHHHHHh
Confidence 3455554 4677789999999986532 1235688999999995 8899999999999999999999999
Q ss_pred cCCCeEEeeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISE----YKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 560 ~~p~lLlLDEPt~~LD~~s~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
.+|+|||+|||||+|||++.+.+.++|++ ++.||++|||.|+.+.++||||.+|++|++++. |.-.+.+
T Consensus 158 ~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~-G~v~~vF 230 (339)
T COG1135 158 NNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEE-GTVSEVF 230 (339)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEe-ccHHHhh
Confidence 99999999999999999999999998874 466999999999999999999999999999974 5554444
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-45 Score=353.87 Aligned_cols=206 Identities=31% Similarity=0.434 Sum_probs=181.3
Q ss_pred CcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc------------
Q 006442 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------ 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------ 489 (645)
+++|++++|+++|+++.+++|+||+|++||+++|+|+||||||||||+|.|+++|++|+|.++|.++.
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 56799999999999999999999999999999999999999999999999999999999999998863
Q ss_pred -cchhccchhhcCCCCCCHHHHHHhhhcc---ccH----HHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccC
Q 006442 490 -PNYFEQNQAEALDLDKTVLETVAEAAED---WRI----DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKP 561 (645)
Q Consensus 490 -~~~~~q~~~~~l~~~~tv~e~v~~~~~~---~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~ 561 (645)
.++++| .-.++.++||+||+.+.... ... +-+..-|+.+|+.+...++.|++||||+++|++||||++.+
T Consensus 86 r~GvlFQ--~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAiald 163 (263)
T COG1127 86 RMGVLFQ--QGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALD 163 (263)
T ss_pred heeEEee--ccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcC
Confidence 123333 45688899999999875432 122 23556789999987778999999999999999999999999
Q ss_pred CCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 562 STLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 562 p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|+||++||||+||||-+...+.++|++. +.|+++||||++.+..+|||++++.+|++. +.|+.++..+
T Consensus 164 Pell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~-~~Gt~~el~~ 235 (263)
T COG1127 164 PELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVI-AEGTPEELLA 235 (263)
T ss_pred CCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEE-EeCCHHHHHh
Confidence 9999999999999999999998888754 569999999999999999999999999998 4688877653
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-45 Score=354.64 Aligned_cols=206 Identities=30% Similarity=0.515 Sum_probs=182.8
Q ss_pred cEEEEEeeeeeeCCee----ceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc--------
Q 006442 423 SVVTIKNLEFGYEDRL----LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP-------- 490 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~----~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~-------- 490 (645)
.+|+++|+++.|+.+. ++++|||+|.+||++||+|++|||||||.++|+|+.+|++|+|.++|.++.+
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 4799999999998776 9999999999999999999999999999999999999999999999975533
Q ss_pred ---chhccchhhcCCCCCCHHHHHHhhhcc----ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCC
Q 006442 491 ---NYFEQNQAEALDLDKTVLETVAEAAED----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (645)
Q Consensus 491 ---~~~~q~~~~~l~~~~tv~e~v~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 563 (645)
.+++|++...+.|..||.+.+...... ...+++.++|+.+|+.....++.|.+|||||+|||||||||..+|+
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~Pk 161 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPK 161 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCC
Confidence 246777777889999999999876532 2234589999999999999999999999999999999999999999
Q ss_pred eEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 564 LLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 564 lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
+||||||||+||...+..+.+++.+. +-|+|+||||+..+..+||||++|++|++++. ++-.+.+
T Consensus 162 lLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~-~~~~~l~ 230 (252)
T COG1124 162 LLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEI-GPTEELL 230 (252)
T ss_pred EEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEe-echhhhh
Confidence 99999999999999999999988653 55999999999999999999999999999974 4444433
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=349.33 Aligned_cols=215 Identities=24% Similarity=0.417 Sum_probs=181.2
Q ss_pred ccEEEEeEEEEe-CCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-------------c
Q 006442 96 SGVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------M 161 (645)
Q Consensus 96 ~~i~i~nls~~y-~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-------------~ 161 (645)
.+|+++|+++.| +++.+|+||||+|++||+++|||+||||||||||+|.|+.+|++|+|.++|.. .
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 369999999999 66789999999999999999999999999999999999999999999998742 2
Q ss_pred eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHh
Q 006442 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (645)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (645)
+|||++|.+.+.+..||.+|++.+.......+ ...+ .+...+-...+-+
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~------~slf-------------------------glfsk~dk~~Al~ 130 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTW------RSLF-------------------------GLFSKEDKAQALD 130 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHH------HHHh-------------------------CCCCHHHHHHHHH
Confidence 69999999999999999999975432211100 0000 0111122345567
Q ss_pred hchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHH
Q 006442 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (645)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~ 317 (645)
.|+.+|+. +...+...+|||||+|||+|||||+++|+++|.|||+++|||.+.+.+.+.|+ +.|.|||+..|+++
T Consensus 131 aLervgi~-~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd 209 (258)
T COG3638 131 ALERVGIL-DKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD 209 (258)
T ss_pred HHHHcCcH-HHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHH
Confidence 78999997 56667789999999999999999999999999999999999999999988875 47999999999999
Q ss_pred HHHhhcCeEEEEcCceeEEeccChHH
Q 006442 318 FLDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 318 ~l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
.+.++||||+-|++|++ .|+|..++
T Consensus 210 lA~~Y~~Riigl~~G~i-vfDg~~~e 234 (258)
T COG3638 210 LAKKYADRIIGLKAGRI-VFDGPASE 234 (258)
T ss_pred HHHHHHhhheEecCCcE-EEeCChhh
Confidence 99999999999999998 78888654
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=338.91 Aligned_cols=201 Identities=27% Similarity=0.466 Sum_probs=178.6
Q ss_pred cEEEEeEEEEeCCee-eeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-------------ce
Q 006442 97 GVKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MK 162 (645)
Q Consensus 97 ~i~i~nls~~y~~~~-vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-------------~~ 162 (645)
+|+++||+|.|++-+ +|+||||+|++||++.|+||+|||||||||+|++..+|++|+|++++.+ .+
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 489999999996545 9999999999999999999999999999999999999999999998753 36
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhh
Q 006442 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (645)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (645)
||+|+|++.+.+..||+||+..++. ....+..++++++.++
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~---------------------------------------v~G~~~~~i~~rV~~~ 121 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLR---------------------------------------VIGKPPREIRRRVSEV 121 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhh---------------------------------------ccCCCHHHHHHHHHHH
Confidence 9999999999999999999864321 0123455678889999
Q ss_pred chhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHHHH
Q 006442 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFL 319 (645)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L---~~~g~tvIivsHd~~~l 319 (645)
|+.+|+. +..+..+.+|||||||||+||||++.+|++||.||||-+|||.....+.+++ .+.|.||||+|||.+.+
T Consensus 122 L~~VgL~-~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv 200 (223)
T COG2884 122 LDLVGLK-HKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELV 200 (223)
T ss_pred HHHhccc-hhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHH
Confidence 9999997 5677789999999999999999999999999999999999999988887765 56799999999999999
Q ss_pred HhhcCeEEEEcCceeEEe
Q 006442 320 DQLCTKIVETEMGVSRTY 337 (645)
Q Consensus 320 ~~~~d~i~~l~~G~~~~~ 337 (645)
+++-.|++.+++|++..+
T Consensus 201 ~~~~~rvl~l~~Grl~~d 218 (223)
T COG2884 201 NRMRHRVLALEDGRLVRD 218 (223)
T ss_pred HhccCcEEEEeCCEEEec
Confidence 999999999999998544
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-44 Score=373.69 Aligned_cols=207 Identities=28% Similarity=0.441 Sum_probs=178.4
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC---------ceEEEE
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFL 166 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~---------~~i~~v 166 (645)
.+|+++|++|+|++..+|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+ ..|||+
T Consensus 6 ~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v 85 (306)
T PRK13537 6 APIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVV 85 (306)
T ss_pred ceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEE
Confidence 46999999999998889999999999999999999999999999999999999999999998753 359999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhc
Q 006442 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (645)
Q Consensus 167 ~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (645)
+|++.+++.+|++||+... ... ...+..+...++.++++.+
T Consensus 86 ~q~~~~~~~~tv~e~l~~~-~~~--------------------------------------~~~~~~~~~~~~~~~l~~~ 126 (306)
T PRK13537 86 PQFDNLDPDFTVRENLLVF-GRY--------------------------------------FGLSAAAARALVPPLLEFA 126 (306)
T ss_pred eccCcCCCCCcHHHHHHHH-HHH--------------------------------------cCCCHHHHHHHHHHHHHHc
Confidence 9999988889999998521 000 0011122344566788888
Q ss_pred CCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhc
Q 006442 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLC 323 (645)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~~ 323 (645)
++. +..++++.+||||||||++|||||+.+|++|||||||+|||+.++.++.++|++ .|+|||++||+++++..+|
T Consensus 127 ~l~-~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~ 205 (306)
T PRK13537 127 KLE-NKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLC 205 (306)
T ss_pred CCc-hHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhC
Confidence 986 577889999999999999999999999999999999999999999999988753 5899999999999999999
Q ss_pred CeEEEEcCceeEEeccChHH
Q 006442 324 TKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 324 d~i~~l~~G~~~~~~g~~~~ 343 (645)
|+|+++++|++ .+.|+.++
T Consensus 206 d~i~il~~G~i-~~~g~~~~ 224 (306)
T PRK13537 206 DRLCVIEEGRK-IAEGAPHA 224 (306)
T ss_pred CEEEEEECCEE-EEECCHHH
Confidence 99999999998 46676544
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-44 Score=357.84 Aligned_cols=208 Identities=28% Similarity=0.455 Sum_probs=181.2
Q ss_pred ccEEEEeEEEEeCCe-eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----------ceE
Q 006442 96 SGVKLENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKI 163 (645)
Q Consensus 96 ~~i~i~nls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-----------~~i 163 (645)
+++.++|++|+|++. .+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. .+|
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 358999999999776 89999999999999999999999999999999999999999999988753 359
Q ss_pred EEEeccCccC-CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhh
Q 006442 164 AFLSQEFEVS-MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (645)
Q Consensus 164 ~~v~Q~~~~~-~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (645)
|||+|+|..+ +..||.+++..+..+ ..++..++++++.+.
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n---------------------------------------~g~~~~e~~~rv~~~ 122 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLEN---------------------------------------LGLPREEIEERVAEA 122 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhh---------------------------------------cCCCHHHHHHHHHHH
Confidence 9999999654 467999998643211 123444577889999
Q ss_pred chhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHH
Q 006442 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (645)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~ 318 (645)
+..+|+. +..++++.+|||||||||+||.+|+.+|++|||||||++||+.+++.+.+++++ .|+|||++|||+++
T Consensus 123 l~~vgl~-~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~ 201 (235)
T COG1122 123 LELVGLE-ELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLEL 201 (235)
T ss_pred HHHcCch-hhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHH
Confidence 9999997 579999999999999999999999999999999999999999999999887743 37899999999999
Q ss_pred HHhhcCeEEEEcCceeEEeccChHHH
Q 006442 319 LDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 319 l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
+..+||+++++++|++ .+.|...++
T Consensus 202 ~~~~ad~v~vl~~G~i-~~~g~p~~i 226 (235)
T COG1122 202 VLEYADRVVVLDDGKI-LADGDPAEI 226 (235)
T ss_pred HHhhCCEEEEEECCEE-eecCCHHHH
Confidence 9999999999999998 566765443
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-43 Score=408.38 Aligned_cols=338 Identities=23% Similarity=0.304 Sum_probs=239.7
Q ss_pred cHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHc---cCCCe
Q 006442 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVP 308 (645)
Q Consensus 234 ~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p--~iLLLDEPts~LD~~~~~~l~~~L~---~~g~t 308 (645)
++..++. .|..+|+..-..++++.+|||||+|||+||+||+.+| ++|||||||+|||+..++.|.++|+ +.|.|
T Consensus 465 ~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~T 543 (943)
T PRK00349 465 EIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNT 543 (943)
T ss_pred HHHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCE
Confidence 3445554 6888999632379999999999999999999999997 9999999999999999999988764 56999
Q ss_pred EEEEecCHHHHHhhcCeEEEE------cCceeEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCch
Q 006442 309 MVIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANS 382 (645)
Q Consensus 309 vIivsHd~~~l~~~~d~i~~l------~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (645)
||+|+||++++. .||+|++| ++|++ .+.|++.++...... + .... +..
T Consensus 544 VIvVeH~~~~i~-~aD~vi~LgpgaG~~~G~i-v~~g~~~e~~~~~~~---------------l--~~~~---l~~---- 597 (943)
T PRK00349 544 LIVVEHDEDTIR-AADYIVDIGPGAGVHGGEV-VASGTPEEIMKNPNS---------------L--TGQY---LSG---- 597 (943)
T ss_pred EEEEeCCHHHHH-hCCEEEEeccccCCCCCEE-eeccCHHHHhcChhh---------------e--eehh---hcc----
Confidence 999999999987 59999999 77776 566776543221000 0 0000 000
Q ss_pred hhHHHHHHHHHHHHHhhhhcccccccceEEeccCCCCCCCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCc
Q 006442 383 GRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCG 462 (645)
Q Consensus 383 ~~~~~~~~~l~rl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsG 462 (645)
+ .....+.. + .....+.|+++|++. ..|+++||+|+.|++++|+|+||||
T Consensus 598 -~--------------~~~~~~~~--------~--~~~~~~~L~v~~l~~-----~~L~~isl~Ip~GeivgVtGvsGSG 647 (943)
T PRK00349 598 -K--------------KKIEVPKE--------R--RKGNGKFLKLKGARE-----NNLKNVDVEIPLGKFTCVTGVSGSG 647 (943)
T ss_pred -c--------------cccccccc--------c--cCCCcceEEecCCcc-----CCcCceEEEEeCCCEEEEEcCCCCC
Confidence 0 00000000 0 011234689999872 3599999999999999999999999
Q ss_pred HHHHHHHHH---------cCCCCCee------------EEEECceecc--------------------------------
Q 006442 463 KSTLLKLIM---------GLEKPRGG------------EVLLGEHNVL-------------------------------- 489 (645)
Q Consensus 463 KSTLl~~l~---------g~~~p~~G------------~i~~~g~~~~-------------------------------- 489 (645)
||||++.+. +...+..+ .|.++..++.
T Consensus 648 KSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~vdQ~pig~~~RS~~~Ty~g~~d~iR~lfa~~~~a~~~g~ 727 (943)
T PRK00349 648 KSTLINETLYKALARKLNGAKKVPGKHKEIEGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDPIRELFAGTPEAKARGY 727 (943)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCCCCcccccccCCCceEEEecCCCCCCCCCCceeeccccHHHHHHhccCccccccCC
Confidence 999999764 11111111 1223221110
Q ss_pred -cchhccch------------------------------------------------hhcCCCCCCHHHHHHhhhccccH
Q 006442 490 -PNYFEQNQ------------------------------------------------AEALDLDKTVLETVAEAAEDWRI 520 (645)
Q Consensus 490 -~~~~~q~~------------------------------------------------~~~l~~~~tv~e~v~~~~~~~~~ 520 (645)
++.|..|. ...-..++|+.|++.+.......
T Consensus 728 ~~~~FS~N~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~l~v~~~g~~i~dvl~ltv~E~l~~f~~~~~i 807 (943)
T PRK00349 728 KPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNRETLEVKYKGKNIADVLDMTVEEALEFFEAIPKI 807 (943)
T ss_pred CcccCCCCCCCCCCCcccccceEEEEeccCCCccccCccccCccccccceEEEECCCCHHHHhcCcHHHHHHHHHhchhh
Confidence 00111110 00001135666666554332233
Q ss_pred HHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCC---CeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEE
Q 006442 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS---TLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVI 594 (645)
Q Consensus 521 ~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p---~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi 594 (645)
....+.|..+|+.....++++.+||||||||+.||++|+.+| +++||||||+|||+..+..+.+.|.++ +.|||
T Consensus 808 ~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVI 887 (943)
T PRK00349 808 ARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVV 887 (943)
T ss_pred hHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 445678999999533468999999999999999999999999 999999999999999999999998865 46999
Q ss_pred EEecCHHHHHhhCCEEEEE------eCCeEEeeCCChhHHHH
Q 006442 595 TVSHDRYFVKQIVNRVVEV------KGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 595 ~vsHd~~~i~~~~d~v~~l------~~g~i~~~~~~~~~~~~ 630 (645)
+||||++++. .||+|+.| ++|+++. .|..+++.+
T Consensus 888 iitH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv~-~Gt~~el~~ 927 (943)
T PRK00349 888 VIEHNLDVIK-TADWIIDLGPEGGDGGGEIVA-TGTPEEVAK 927 (943)
T ss_pred EEecCHHHHH-hCCEEEEecCCcCCCCCEEEE-eCCHHHHHh
Confidence 9999999986 69999999 6899884 577777654
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-44 Score=377.24 Aligned_cols=207 Identities=28% Similarity=0.456 Sum_probs=177.8
Q ss_pred cEEEEeEEEEeCC----eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC------------
Q 006442 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (645)
Q Consensus 97 ~i~i~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~------------ 160 (645)
+|+++|++|+|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 4899999999952 469999999999999999999999999999999999999999999998742
Q ss_pred -ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHH
Q 006442 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (645)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (645)
.+|+|++|++.+++..||+||+...... ...+....++++
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~---------------------------------------~~~~~~~~~~~v 121 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLEL---------------------------------------DNTPKDEIKRKV 121 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHH---------------------------------------cCCCHHHHHHHH
Confidence 2599999999988889999998532110 001122344567
Q ss_pred HhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 006442 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (645)
Q Consensus 240 ~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd 315 (645)
.++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|.|||+|||+
T Consensus 122 ~e~l~~vgL~-~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~ 200 (343)
T TIGR02314 122 TELLALVGLG-DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHE 200 (343)
T ss_pred HHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 7889999996 678999999999999999999999999999999999999999999999888753 48999999999
Q ss_pred HHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 316 ~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
++.+.++||+|++|++|++. ..|+..++
T Consensus 201 ~~~v~~~~d~v~vl~~G~iv-~~g~~~~v 228 (343)
T TIGR02314 201 MDVVKRICDCVAVISNGELI-EQGTVSEI 228 (343)
T ss_pred HHHHHHhCCEEEEEECCEEE-EEcCHHHH
Confidence 99999999999999999984 55665544
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-44 Score=356.10 Aligned_cols=197 Identities=26% Similarity=0.444 Sum_probs=168.5
Q ss_pred cEEEEeEEEEeCC--eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-------------c
Q 006442 97 GVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------M 161 (645)
Q Consensus 97 ~i~i~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-------------~ 161 (645)
+|+++|++++|++ +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 3789999999964 469999999999999999999999999999999999999999999998642 2
Q ss_pred eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHh
Q 006442 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (645)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (645)
.++|++|++.+++..||.||+...... . .......++++.+
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~~~~~~ 121 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRI---------------I------------------------GVPPRDANERVSA 121 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHh---------------c------------------------CCCHHHHHHHHHH
Confidence 599999999887888999998532100 0 0011122345667
Q ss_pred hchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHH
Q 006442 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAF 318 (645)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~ 318 (645)
+++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++++.++|++ .+.|||+||||+++
T Consensus 122 ~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~ 200 (216)
T TIGR00960 122 ALEKVGLE-GKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINL 200 (216)
T ss_pred HHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 88888986 567888999999999999999999999999999999999999999999988753 48999999999999
Q ss_pred HHhhcCeEEEEcCce
Q 006442 319 LDQLCTKIVETEMGV 333 (645)
Q Consensus 319 l~~~~d~i~~l~~G~ 333 (645)
+..+||+++++++|+
T Consensus 201 ~~~~~d~i~~l~~G~ 215 (216)
T TIGR00960 201 VETYRHRTLTLSRGR 215 (216)
T ss_pred HHHhCCEEEEEeCCc
Confidence 999999999999886
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-44 Score=374.82 Aligned_cols=203 Identities=29% Similarity=0.471 Sum_probs=180.6
Q ss_pred CcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cchh
Q 006442 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYF 493 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~ 493 (645)
.+.|+++||++.|++..+++|+||+|++||+++|+||||||||||||+|+|+..|++|+|.++|.++. .+++
T Consensus 3 ~~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~V 82 (352)
T COG3842 3 KPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMV 82 (352)
T ss_pred CceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhccccee
Confidence 34699999999999999999999999999999999999999999999999999999999999999873 2456
Q ss_pred ccchhhcCCCCCCHHHHHHhhhc-cc------cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEE
Q 006442 494 EQNQAEALDLDKTVLETVAEAAE-DW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (645)
Q Consensus 494 ~q~~~~~l~~~~tv~e~v~~~~~-~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 566 (645)
+|+ ..++|.+||.+||.++.. .+ ..+++.++|+.+++. +..+++|++|||||||||||||||+.+|++||
T Consensus 83 FQ~--YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~-~~~~R~p~qLSGGQqQRVALARAL~~~P~vLL 159 (352)
T COG3842 83 FQS--YALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLE-GFADRKPHQLSGGQQQRVALARALVPEPKVLL 159 (352)
T ss_pred ecC--cccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCch-hhhhhChhhhChHHHHHHHHHHHhhcCcchhh
Confidence 654 679999999999999865 11 124688999999994 68899999999999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHH
Q 006442 567 LDEPTNHLDIPSKEMLEEAISE----YKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQV 628 (645)
Q Consensus 567 LDEPt~~LD~~s~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~ 628 (645)
||||.|+||..-+..|+..+++ .+.|.|+||||.+++..++|||++|++|+|... |.++++
T Consensus 160 LDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~-gtP~ei 224 (352)
T COG3842 160 LDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQV-GTPEEI 224 (352)
T ss_pred hcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeec-CCHHHH
Confidence 9999999999999988877764 467999999999999999999999999999865 444443
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=377.91 Aligned_cols=208 Identities=26% Similarity=0.401 Sum_probs=179.7
Q ss_pred cEEEEeEEEEe-CCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------ceEEEEe
Q 006442 97 GVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLS 167 (645)
Q Consensus 97 ~i~i~nls~~y-~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------~~i~~v~ 167 (645)
+|+++|++++| ++..+|+|+||+|++|++++|+|||||||||||++|+|+.+|++|+|.++|.. ..||||+
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 58999999999 77789999999999999999999999999999999999999999999998753 3599999
Q ss_pred ccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcC
Q 006442 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (645)
Q Consensus 168 Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg 247 (645)
|++.+++.+||+||+...+.. ...+..+..+++.++++.+|
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~~g 123 (356)
T PRK11650 83 QNYALYPHMSVRENMAYGLKI---------------------------------------RGMPKAEIEERVAEAARILE 123 (356)
T ss_pred CCccccCCCCHHHHHHhHHhh---------------------------------------cCCCHHHHHHHHHHHHHHcC
Confidence 999998999999998643210 00111233456778889999
Q ss_pred CCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhc
Q 006442 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLC 323 (645)
Q Consensus 248 l~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~ 323 (645)
+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|+ +.|.|+|+||||.+++..+|
T Consensus 124 L~-~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~ 202 (356)
T PRK11650 124 LE-PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLA 202 (356)
T ss_pred Ch-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 96 68899999999999999999999999999999999999999999999887764 35899999999999999999
Q ss_pred CeEEEEcCceeEEeccChHHHH
Q 006442 324 TKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 324 d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
|+|++|++|++. ..|...+.+
T Consensus 203 D~i~vl~~G~i~-~~g~~~~~~ 223 (356)
T PRK11650 203 DRVVVMNGGVAE-QIGTPVEVY 223 (356)
T ss_pred CEEEEEeCCEEE-EECCHHHHH
Confidence 999999999984 456655543
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=358.53 Aligned_cols=206 Identities=29% Similarity=0.435 Sum_probs=174.0
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-------------ceEE
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MKIA 164 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-------------~~i~ 164 (645)
|+++|++++|++.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 80 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMG 80 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceE
Confidence 478999999998889999999999999999999999999999999999999999999987632 2499
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
|++|++.+++..||.||+....... ...+.....+++.++++
T Consensus 81 ~v~q~~~~~~~~tv~~~l~~~~~~~--------------------------------------~~~~~~~~~~~~~~~l~ 122 (235)
T cd03261 81 MLFQSGALFDSLTVFENVAFPLREH--------------------------------------TRLSEEEIREIVLEKLE 122 (235)
T ss_pred EEccCcccCCCCcHHHHHHHHHhhc--------------------------------------cCCCHHHHHHHHHHHHH
Confidence 9999998878889999985321000 00011122345667788
Q ss_pred hcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHH
Q 006442 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLD 320 (645)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~ 320 (645)
.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|++ .|+|||+||||++++.
T Consensus 123 ~~~l~-~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~ 201 (235)
T cd03261 123 AVGLR-GAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAF 201 (235)
T ss_pred HcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHH
Confidence 88986 566888999999999999999999999999999999999999999999988753 4899999999999999
Q ss_pred hhcCeEEEEcCceeEEeccChHH
Q 006442 321 QLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 321 ~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
.+||+|+++++|++ .+.|+.++
T Consensus 202 ~~~d~v~~l~~G~i-~~~g~~~~ 223 (235)
T cd03261 202 AIADRIAVLYDGKI-VAEGTPEE 223 (235)
T ss_pred HhcCEEEEEECCeE-EEecCHHH
Confidence 99999999999997 35566544
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=375.99 Aligned_cols=209 Identities=24% Similarity=0.386 Sum_probs=181.0
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------ceEEEEe
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLS 167 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------~~i~~v~ 167 (645)
+.|+++|++++|++..+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.. ..|+||+
T Consensus 5 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vf 84 (351)
T PRK11432 5 NFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVF 84 (351)
T ss_pred cEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 46999999999998889999999999999999999999999999999999999999999998742 3699999
Q ss_pred ccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcC
Q 006442 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (645)
Q Consensus 168 Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg 247 (645)
|++.+++.+||+||+...+.. ...+..+..+++.++++.+|
T Consensus 85 Q~~~lfp~~tv~eNi~~~l~~---------------------------------------~~~~~~~~~~~v~~~l~~~g 125 (351)
T PRK11432 85 QSYALFPHMSLGENVGYGLKM---------------------------------------LGVPKEERKQRVKEALELVD 125 (351)
T ss_pred CCcccCCCCCHHHHHHHHHhH---------------------------------------cCCCHHHHHHHHHHHHHHcC
Confidence 999999999999998643210 00112233456778888899
Q ss_pred CCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhc
Q 006442 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLC 323 (645)
Q Consensus 248 l~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~ 323 (645)
+. +..++++.+|||||||||+|||||+.+|++|||||||++||+..++++.+.|+ +.|.|+|+||||.+++..+|
T Consensus 126 l~-~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~la 204 (351)
T PRK11432 126 LA-GFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVS 204 (351)
T ss_pred Cc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhC
Confidence 96 57899999999999999999999999999999999999999999999987764 35899999999999999999
Q ss_pred CeEEEEcCceeEEeccChHHHH
Q 006442 324 TKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 324 d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
|+|++|++|++. ..|+..+.+
T Consensus 205 D~i~vm~~G~i~-~~g~~~~~~ 225 (351)
T PRK11432 205 DTVIVMNKGKIM-QIGSPQELY 225 (351)
T ss_pred CEEEEEECCEEE-EEcCHHHHH
Confidence 999999999984 456655543
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-44 Score=344.89 Aligned_cols=205 Identities=28% Similarity=0.419 Sum_probs=180.3
Q ss_pred cEEEEEeeeeee-CCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc------------
Q 006442 423 SVVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------ 489 (645)
Q Consensus 423 ~~i~~~~v~~~y-~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------ 489 (645)
.+|+++||++.| +++.+|++|||+|++||+++|+|+||||||||||+|.|+.+|++|+|.++|.++.
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 479999999999 5788999999999999999999999999999999999999999999999997652
Q ss_pred -cchhccchhhcCCCCCCHHHHHHhhhc-----------cc---cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHH
Q 006442 490 -PNYFEQNQAEALDLDKTVLETVAEAAE-----------DW---RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF 554 (645)
Q Consensus 490 -~~~~~q~~~~~l~~~~tv~e~v~~~~~-----------~~---~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~l 554 (645)
.++++| ..++.+..+|++|+..+.- .+ ....+.++|+++|+ .+...++.++|||||||||+|
T Consensus 82 ~iGmIfQ--~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi-~~~A~qra~~LSGGQQQRVaI 158 (258)
T COG3638 82 DIGMIFQ--QFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGI-LDKAYQRASTLSGGQQQRVAI 158 (258)
T ss_pred hceeEec--cCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCc-HHHHHHHhccCCcchhHHHHH
Confidence 244554 4578899999999987631 11 23457889999999 577889999999999999999
Q ss_pred HHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
||||+++|+|+|.|||+++|||.+.+.+++.|++. +.|||+..|+++++.+|||||+-|++|+++ |.|+..+..+
T Consensus 159 ARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~iv-fDg~~~el~~ 237 (258)
T COG3638 159 ARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV-FDGPASELTD 237 (258)
T ss_pred HHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEE-EeCChhhhhH
Confidence 99999999999999999999999999999999753 569999999999999999999999999998 5788766543
Q ss_pred H
Q 006442 631 L 631 (645)
Q Consensus 631 ~ 631 (645)
.
T Consensus 238 ~ 238 (258)
T COG3638 238 E 238 (258)
T ss_pred H
Confidence 3
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=353.14 Aligned_cols=198 Identities=32% Similarity=0.470 Sum_probs=169.9
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------ceEEEEecc
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------~~i~~v~Q~ 169 (645)
|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|++|+
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 80 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQD 80 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCc
Confidence 478999999988889999999999999999999999999999999999999999999997642 259999999
Q ss_pred CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCC
Q 006442 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (645)
Q Consensus 170 ~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (645)
+.+++..|++||+....... ........+++.++++.+|+.
T Consensus 81 ~~~~~~~tv~~~l~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~~~~l~ 121 (213)
T cd03259 81 YALFPHLTVAENIAFGLKLR---------------------------------------GVPKAEIRARVRELLELVGLE 121 (213)
T ss_pred hhhccCCcHHHHHHhHHHHc---------------------------------------CCCHHHHHHHHHHHHHHcCCh
Confidence 98877889999985321100 000111234456778888986
Q ss_pred cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCe
Q 006442 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (645)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d~ 325 (645)
+..++++.+||||||||++|||||+.+|++|||||||+|||+.++.++.++|++ .|.|||++|||++++.++||+
T Consensus 122 -~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 200 (213)
T cd03259 122 -GLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADR 200 (213)
T ss_pred -hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCE
Confidence 567888999999999999999999999999999999999999999999988753 489999999999999999999
Q ss_pred EEEEcCceeE
Q 006442 326 IVETEMGVSR 335 (645)
Q Consensus 326 i~~l~~G~~~ 335 (645)
|+++++|++.
T Consensus 201 v~~l~~G~i~ 210 (213)
T cd03259 201 IAVMNEGRIV 210 (213)
T ss_pred EEEEECCEEE
Confidence 9999999873
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=374.82 Aligned_cols=208 Identities=29% Similarity=0.455 Sum_probs=180.8
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------ceEEEEec
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------~~i~~v~Q 168 (645)
+|+++|++++|++..+|+|+||+|++|++++|+|||||||||||++|+|+.+|++|+|.++|.. ..|+||+|
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q 83 (353)
T TIGR03265 4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQ 83 (353)
T ss_pred EEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence 5999999999998889999999999999999999999999999999999999999999998743 35999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCC
Q 006442 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (645)
Q Consensus 169 ~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (645)
++.+++.+||+||+...+.. ...+..+..+++.++++.+|+
T Consensus 84 ~~~lfp~~tv~eNi~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~l~L 124 (353)
T TIGR03265 84 SYALFPNLTVADNIAYGLKN---------------------------------------RGMGRAEVAERVAELLDLVGL 124 (353)
T ss_pred CcccCCCCcHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHHcCC
Confidence 99999999999998643210 001122335567788999999
Q ss_pred CcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcC
Q 006442 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCT 324 (645)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d 324 (645)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|+ +.+.|+|+||||.+++..+||
T Consensus 125 ~-~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d 203 (353)
T TIGR03265 125 P-GSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMAD 203 (353)
T ss_pred C-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC
Confidence 6 68899999999999999999999999999999999999999999999988764 358999999999999999999
Q ss_pred eEEEEcCceeEEeccChHHHH
Q 006442 325 KIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 325 ~i~~l~~G~~~~~~g~~~~~~ 345 (645)
+|++|++|++. ..|+..+.+
T Consensus 204 ~i~vl~~G~i~-~~g~~~~~~ 223 (353)
T TIGR03265 204 RIVVMNHGVIE-QVGTPQEIY 223 (353)
T ss_pred EEEEEECCEEE-EEcCHHHHH
Confidence 99999999984 456655544
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-43 Score=371.13 Aligned_cols=209 Identities=28% Similarity=0.442 Sum_probs=178.2
Q ss_pred CCccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC---------ceEE
Q 006442 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIA 164 (645)
Q Consensus 94 ~~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~---------~~i~ 164 (645)
...+|+++|++++|++..+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+ ..||
T Consensus 38 ~~~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 117 (340)
T PRK13536 38 STVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIG 117 (340)
T ss_pred CceeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEE
Confidence 3457999999999999899999999999999999999999999999999999999999999998753 3599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
|++|++.+++.+|+.||+... ... . ........+++.++++
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~-~~~--------------~------------------------~~~~~~~~~~~~~ll~ 158 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVF-GRY--------------F------------------------GMSTREIEAVIPSLLE 158 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHH-HHH--------------c------------------------CCCHHHHHHHHHHHHH
Confidence 999999888899999998521 000 0 0011122334566778
Q ss_pred hcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHh
Q 006442 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~ 321 (645)
.+|+. +..++++.+||||||||++||+||+.+|++|||||||+|||+.++.++.++|++ .|+|||++||+++++.+
T Consensus 159 ~~~L~-~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~ 237 (340)
T PRK13536 159 FARLE-SKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAER 237 (340)
T ss_pred HcCCc-hhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHH
Confidence 88886 567889999999999999999999999999999999999999999999988753 58999999999999999
Q ss_pred hcCeEEEEcCceeEEeccChHH
Q 006442 322 LCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 322 ~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
+||+|+++++|++ .+.|+.++
T Consensus 238 ~~d~i~il~~G~i-~~~g~~~~ 258 (340)
T PRK13536 238 LCDRLCVLEAGRK-IAEGRPHA 258 (340)
T ss_pred hCCEEEEEECCEE-EEEcCHHH
Confidence 9999999999998 45666544
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=367.06 Aligned_cols=202 Identities=30% Similarity=0.473 Sum_probs=179.1
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cchhcc
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~q 495 (645)
.|+++||++.|++..+++++||+|+.||+++|+||||||||||||+|+|+.+|++|+|.++|.++. .++++|
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ 82 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQ 82 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeC
Confidence 589999999998765999999999999999999999999999999999999999999999998763 245565
Q ss_pred chhhcCCCCCCHHHHHHhhhccc------cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeC
Q 006442 496 NQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (645)
Q Consensus 496 ~~~~~l~~~~tv~e~v~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 569 (645)
+ +.++|.+||++|+.++.... ...++++.++.+++ .++++++|.+|||||||||||||||+++|+++||||
T Consensus 83 ~--yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l-~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DE 159 (338)
T COG3839 83 N--YALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGL-EHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDE 159 (338)
T ss_pred C--ccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCC-hhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecC
Confidence 5 57899999999999876432 24568889999999 588999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHH
Q 006442 570 PTNHLDIPSKEMLEEAISE----YKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQV 628 (645)
Q Consensus 570 Pt~~LD~~s~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~ 628 (645)
|+|+||...+..+...|++ ++.|+|.||||..+++..+|||++|++|+|.....+.+-|
T Consensus 160 PlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely 222 (338)
T COG3839 160 PLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELY 222 (338)
T ss_pred chhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHh
Confidence 9999999999888877764 4679999999999999999999999999998754444443
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-44 Score=336.07 Aligned_cols=208 Identities=30% Similarity=0.491 Sum_probs=182.5
Q ss_pred cEEEEeEEEEeCCee-eeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC---------ceEEEE
Q 006442 97 GVKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFL 166 (645)
Q Consensus 97 ~i~i~nls~~y~~~~-vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~---------~~i~~v 166 (645)
+|++.+++++|++.. +++||||++++|+++||+|+|||||||+||+|++++.|++|+|++++.+ .+||.+
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence 488999999999865 9999999999999999999999999999999999999999999998753 369999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhc
Q 006442 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (645)
Q Consensus 167 ~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (645)
+-+..++..+|++||+.+ |... ..+...+++++++++.+.|
T Consensus 81 ~~e~glY~RlT~rEnl~~-Fa~L--------------------------------------~~l~~~~~kari~~l~k~l 121 (245)
T COG4555 81 FGERGLYARLTARENLKY-FARL--------------------------------------NGLSRKEIKARIAELSKRL 121 (245)
T ss_pred cCCcChhhhhhHHHHHHH-HHHH--------------------------------------hhhhhhHHHHHHHHHHHHh
Confidence 988888899999999863 2211 0122335677888889999
Q ss_pred CCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHHHHHhhc
Q 006442 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQLC 323 (645)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L---~~~g~tvIivsHd~~~l~~~~ 323 (645)
++. +..|+.+.+||-||||||+|||||+++|++|+|||||||||..++..+.+++ ++.|++||++||+++++..+|
T Consensus 122 ~l~-~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealC 200 (245)
T COG4555 122 QLL-EYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALC 200 (245)
T ss_pred ChH-HHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhh
Confidence 986 6889999999999999999999999999999999999999999999998876 456999999999999999999
Q ss_pred CeEEEEcCceeEEeccChHHHH
Q 006442 324 TKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 324 d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
|+|+++..|.+ .+.|+..+..
T Consensus 201 Drvivlh~Gev-v~~gs~~~l~ 221 (245)
T COG4555 201 DRVIVLHKGEV-VLEGSIEALD 221 (245)
T ss_pred heEEEEecCcE-EEcCCHHHHH
Confidence 99999999998 6788866543
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=345.59 Aligned_cols=193 Identities=35% Similarity=0.514 Sum_probs=167.0
Q ss_pred EEEEEeeeeeeCC----eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------
Q 006442 424 VVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~----~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (645)
+++++||++.|+. ..+|+++||+|++||+++|+|||||||||||++|.|+.+|++|.|.++|.++.
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 3689999999963 36899999999999999999999999999999999999999999999998763
Q ss_pred ----cchhccchhhcCCCCCCHHHHHHhhhc----c--ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHc
Q 006442 490 ----PNYFEQNQAEALDLDKTVLETVAEAAE----D--WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV 559 (645)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~v~~~~~----~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~ 559 (645)
.++++|+ .++.+.+|+.|||..... . .....+..+++.+|+.....+++|.+|||||||||||||||+
T Consensus 81 R~~~iGfvFQ~--~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~ 158 (226)
T COG1136 81 RRKKIGFVFQN--FNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALI 158 (226)
T ss_pred HHHhEEEECcc--CCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHh
Confidence 2455554 578899999999986421 1 124457788999999645555889999999999999999999
Q ss_pred cCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEE
Q 006442 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQ 619 (645)
Q Consensus 560 ~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~ 619 (645)
.+|+|++.||||.+||.++.+.+.+++.+. +.|||+||||...+. +|||++.|.+|++.
T Consensus 159 ~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~~ 221 (226)
T COG1136 159 NNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKIE 221 (226)
T ss_pred cCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCeee
Confidence 999999999999999999999999998765 459999999998886 69999999999954
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-43 Score=364.75 Aligned_cols=206 Identities=31% Similarity=0.511 Sum_probs=177.6
Q ss_pred cEEEEeEEEEeC-CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC---------ceEEEE
Q 006442 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFL 166 (645)
Q Consensus 97 ~i~i~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~---------~~i~~v 166 (645)
.++++|++++|+ ++.+|+||||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.+ .+|||+
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~ 83 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV 83 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEE
Confidence 488999999999 6899999999999999999999999999999999999999999999998742 259999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhc
Q 006442 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (645)
Q Consensus 167 ~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (645)
+|++.+++.+|++||+..... +. .......+++++++++.+
T Consensus 84 ~~~~~~~~~lT~~e~l~~~~~---------------l~------------------------~~~~~~~~~~~~~~l~~~ 124 (293)
T COG1131 84 PQEPSLYPELTVRENLEFFAR---------------LY------------------------GLSKEEAEERIEELLELF 124 (293)
T ss_pred ccCCCCCccccHHHHHHHHHH---------------Hh------------------------CCChhHHHHHHHHHHHHc
Confidence 999999999999999852100 00 001112345788899999
Q ss_pred CCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCC-CeEEEEecCHHHHHhh
Q 006442 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQD-VPMVIISHDRAFLDQL 322 (645)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g-~tvIivsHd~~~l~~~ 322 (645)
|+.. ..++++.+||+|||||++||+||+.+|++|||||||+||||.++..+.++|+ +.| +||+++||.++++..+
T Consensus 125 ~L~~-~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~ 203 (293)
T COG1131 125 GLED-KANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEEL 203 (293)
T ss_pred CCch-hhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHh
Confidence 9975 4578899999999999999999999999999999999999999999998875 345 7999999999999999
Q ss_pred cCeEEEEcCceeEEeccChHH
Q 006442 323 CTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 323 ~d~i~~l~~G~~~~~~g~~~~ 343 (645)
||+|+++++|++ .+.|...+
T Consensus 204 ~d~v~il~~G~~-~~~g~~~~ 223 (293)
T COG1131 204 CDRVIILNDGKI-IAEGTPEE 223 (293)
T ss_pred CCEEEEEeCCEE-EEeCCHHH
Confidence 999999999998 45565544
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=353.61 Aligned_cols=206 Identities=34% Similarity=0.506 Sum_probs=183.3
Q ss_pred cEEEEEeeeeeeCCe-eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----------c
Q 006442 423 SVVTIKNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------P 490 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~-~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~ 490 (645)
.+++++++++.|++. .+++++||+|++||+++|+|+||||||||+++|.|+++|++|.|.++|.++. .
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 468999999999875 8999999999999999999999999999999999999999999999997643 4
Q ss_pred chhccchhhcCCCCCCHHHHHHhhhccc------cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCe
Q 006442 491 NYFEQNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (645)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~v~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 564 (645)
+++.|+++.++ +..||.+.++++.... ...++.++|..+|+. +..++++++||||||||||||.+|+.+|++
T Consensus 82 G~VfQnpd~q~-~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~-~~~~r~p~~LSGGqkqRvaIA~vLa~~P~i 159 (235)
T COG1122 82 GLVFQNPDDQL-FGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLE-ELLDRPPFNLSGGQKQRVAIAGVLAMGPEI 159 (235)
T ss_pred EEEEECccccc-ccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCch-hhccCCccccCCcceeeHHhhHHHHcCCCE
Confidence 68889886655 6789999999875321 234578899999995 678999999999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHH
Q 006442 565 LVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSL 631 (645)
Q Consensus 565 LlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~ 631 (645)
|||||||++||+.+++.+.+.++++ +.|||+||||++++..+|||+++|++|+++. .|+..++++.
T Consensus 160 liLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~-~g~p~~i~~~ 229 (235)
T COG1122 160 LLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILA-DGDPAEIFND 229 (235)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEee-cCCHHHHhhh
Confidence 9999999999999999999999875 3599999999999999999999999999974 5776666654
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-43 Score=350.82 Aligned_cols=198 Identities=28% Similarity=0.476 Sum_probs=170.7
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC---------ceEEEEec
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~---------~~i~~v~Q 168 (645)
|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..++|++|
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQ 80 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecC
Confidence 578999999998889999999999999999999999999999999999999999999998642 25999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCC
Q 006442 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (645)
Q Consensus 169 ~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (645)
++.+++..|+++|+...... . ........+++.++++.+|+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l 121 (220)
T cd03265 81 DLSVDDELTGWENLYIHARL---------------Y------------------------GVPGAERRERIDELLDFVGL 121 (220)
T ss_pred CccccccCcHHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHHHHcCC
Confidence 99887788999998531100 0 00111233456778888898
Q ss_pred CcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcC
Q 006442 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (645)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d 324 (645)
. +..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|++ .++|||++|||++++..+||
T Consensus 122 ~-~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d 200 (220)
T cd03265 122 L-EAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCD 200 (220)
T ss_pred H-HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 6 567888999999999999999999999999999999999999999999887743 48899999999999999999
Q ss_pred eEEEEcCceeE
Q 006442 325 KIVETEMGVSR 335 (645)
Q Consensus 325 ~i~~l~~G~~~ 335 (645)
+++++++|++.
T Consensus 201 ~i~~l~~G~i~ 211 (220)
T cd03265 201 RVAIIDHGRII 211 (220)
T ss_pred EEEEEeCCEEE
Confidence 99999999984
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=401.40 Aligned_cols=328 Identities=24% Similarity=0.323 Sum_probs=229.6
Q ss_pred hchhcCCCcccccccCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCH
Q 006442 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDR 316 (645)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p--~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~ 316 (645)
.|..+|+.....++++.+|||||+|||+||++|+.+| ++|||||||+|||+..+..|.++|+ +.|.|||+|+||+
T Consensus 470 ~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~ 549 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE 549 (924)
T ss_pred hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 3677888532368999999999999999999999986 8999999999999999999988764 4689999999999
Q ss_pred HHHHhhcCeEEEE------cCceeEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHH
Q 006442 317 AFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEK 390 (645)
Q Consensus 317 ~~l~~~~d~i~~l------~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 390 (645)
+++. .||+|++| ++|++ .+.|+..++..... ... .. .+. +.
T Consensus 550 ~~i~-~aD~vi~LgpgaG~~~G~I-v~~g~~~el~~~~~---------------~lt--~~---~l~-----~~------ 596 (924)
T TIGR00630 550 ETIR-AADYVIDIGPGAGIHGGEV-VASGTPEEILANPD---------------SLT--GQ---YLS-----GK------ 596 (924)
T ss_pred HHHh-hCCEEEEecccccCCCCEE-eeccCHHHHhcCch---------------hee--ee---ccc-----cc------
Confidence 9997 89999999 77776 45565443211100 000 00 000 00
Q ss_pred HHHHHHHhhhhcccccccceEEeccCCCCCCCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHH
Q 006442 391 KLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470 (645)
Q Consensus 391 ~l~rl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l 470 (645)
.....+ + .........|+++|++. ..|+++||+|+.|++++|+|+||||||||++-.
T Consensus 597 --------~~~~~~---~-------~~~~~~~~~l~l~~~~~-----~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~~ 653 (924)
T TIGR00630 597 --------KKIEVP---K-------ERRPGNGKFLTLKGARE-----NNLKNITVSIPLGLFTCITGVSGSGKSTLINDT 653 (924)
T ss_pred --------cccccc---c-------cccCCCcceEEEEeCcc-----CCcCceEEEEeCCCEEEEECCCCCCHHHHHHHH
Confidence 000000 0 00011234799999873 359999999999999999999999999999833
Q ss_pred H---------c-CCCCC-----ee------EEEECceecc---------------------------------cchhccc
Q 006442 471 M---------G-LEKPR-----GG------EVLLGEHNVL---------------------------------PNYFEQN 496 (645)
Q Consensus 471 ~---------g-~~~p~-----~G------~i~~~g~~~~---------------------------------~~~~~q~ 496 (645)
. + ..+|. .| .|.+|..++. ++.|..|
T Consensus 654 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vdQ~pi~~~~RS~~aTy~~~~d~iR~lfa~~~~a~~~g~~~~~FSfN 733 (924)
T TIGR00630 654 LYPALARRLNGAKTQPGRYKSIEGLEHLDKVIHIDQSPIGRTPRSNPATYTGVFDEIRELFAETPEAKARGYTPGRFSFN 733 (924)
T ss_pred HHHHHHHHhcccccCCCCcCccccccCCCceEEEecCCCCCCCCCchhhhhhhHHHHHHHHhcCCccccCCCChhhcCCC
Confidence 2 1 10110 11 2444432210 0111111
Q ss_pred hh-------------------------------------h-----------cCCCCCCHHHHHHhhhccccHHHHHHHHh
Q 006442 497 QA-------------------------------------E-----------ALDLDKTVLETVAEAAEDWRIDDIKGLLG 528 (645)
Q Consensus 497 ~~-------------------------------------~-----------~l~~~~tv~e~v~~~~~~~~~~~~~~~L~ 528 (645)
.. + .-..++|+.|.+.+........+....|.
T Consensus 734 ~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~l~v~~~g~~i~dvl~~tv~e~~~f~~~~~~i~~~l~~L~ 813 (924)
T TIGR00630 734 VKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRETLEVKYKGKNIADVLDMTVEEAYEFFEAVPSISRKLQTLC 813 (924)
T ss_pred CCCCCCCCCccceEEEEEccCCCCcccCCCCcCCceeChHHHhceeCCCCHHHHhCCcHHHHHHHHHhccchhHHHHHHH
Confidence 00 0 00123444544444322222334567888
Q ss_pred hcCCChhhhccCcCcCCHhHHHHHHHHHHHcc---CCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHH
Q 006442 529 RCNFKADMLDRKVSLLSGGEKARLAFCKFMVK---PSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYF 602 (645)
Q Consensus 529 ~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~---~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~ 602 (645)
.+|+.....++++.+|||||+||++||++|+. +|+++||||||+|||+.++..+.+.|.++ +.|||+|+||+++
T Consensus 814 ~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~ 893 (924)
T TIGR00630 814 DVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDV 893 (924)
T ss_pred HcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 89995334689999999999999999999997 59999999999999999999999999865 5699999999999
Q ss_pred HHhhCCEEEEE------eCCeEEeeCCChhH
Q 006442 603 VKQIVNRVVEV------KGSNLQDYAGDYNQ 627 (645)
Q Consensus 603 i~~~~d~v~~l------~~g~i~~~~~~~~~ 627 (645)
+. .||++++| ++|+++. .|..++
T Consensus 894 i~-~aD~ii~Lgp~~G~~gG~iv~-~G~~~~ 922 (924)
T TIGR00630 894 IK-TADYIIDLGPEGGDGGGTIVA-SGTPEE 922 (924)
T ss_pred HH-hCCEEEEecCCccCCCCEEEE-eCCHHH
Confidence 85 59999999 6899984 566554
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-43 Score=374.65 Aligned_cols=212 Identities=26% Similarity=0.399 Sum_probs=182.1
Q ss_pred CCccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------ceEEE
Q 006442 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAF 165 (645)
Q Consensus 94 ~~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------~~i~~ 165 (645)
..+.|+++|++++|++.++|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.++|.. ..|+|
T Consensus 11 ~~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 90 (375)
T PRK09452 11 LSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNT 90 (375)
T ss_pred CCceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 4557999999999998889999999999999999999999999999999999999999999998753 35999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchh
Q 006442 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (645)
Q Consensus 166 v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (645)
++|++.+++.+||+||+..++.. ...+..+..+++.++++.
T Consensus 91 vfQ~~~lfp~ltv~eNi~~~l~~---------------------------------------~~~~~~~~~~~~~~~l~~ 131 (375)
T PRK09452 91 VFQSYALFPHMTVFENVAFGLRM---------------------------------------QKTPAAEITPRVMEALRM 131 (375)
T ss_pred EecCcccCCCCCHHHHHHHHHhh---------------------------------------cCCCHHHHHHHHHHHHHH
Confidence 99999999999999998643210 001112334567788888
Q ss_pred cCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHh
Q 006442 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~ 321 (645)
+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+ +.|.|+|+||||.+++..
T Consensus 132 ~~l~-~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~ 210 (375)
T PRK09452 132 VQLE-EFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALT 210 (375)
T ss_pred cCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 9996 68899999999999999999999999999999999999999999999988764 358999999999999999
Q ss_pred hcCeEEEEcCceeEEeccChHHHHH
Q 006442 322 LCTKIVETEMGVSRTYEGNYSQYVL 346 (645)
Q Consensus 322 ~~d~i~~l~~G~~~~~~g~~~~~~~ 346 (645)
+||+|++|++|++. ..|...+.+.
T Consensus 211 laDri~vl~~G~i~-~~g~~~~i~~ 234 (375)
T PRK09452 211 MSDRIVVMRDGRIE-QDGTPREIYE 234 (375)
T ss_pred hCCEEEEEECCEEE-EEcCHHHHHh
Confidence 99999999999984 4466555443
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=373.14 Aligned_cols=211 Identities=24% Similarity=0.400 Sum_probs=181.2
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------ceEEEE
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFL 166 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------~~i~~v 166 (645)
.++|+++|++++|++..+|+|+||+|++|++++|+|||||||||||++|+|+.+|++|+|.++|.. ..|||+
T Consensus 17 ~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 96 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMM 96 (377)
T ss_pred CceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 456999999999998889999999999999999999999999999999999999999999998753 259999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhc
Q 006442 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (645)
Q Consensus 167 ~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (645)
+|++.+++.+||.||+...+... ..+..+..+++.++++.+
T Consensus 97 fQ~~~lfp~ltv~eNi~~~l~~~---------------------------------------~~~~~~~~~~v~~~l~~l 137 (377)
T PRK11607 97 FQSYALFPHMTVEQNIAFGLKQD---------------------------------------KLPKAEIASRVNEMLGLV 137 (377)
T ss_pred eCCCccCCCCCHHHHHHHHHHHc---------------------------------------CCCHHHHHHHHHHHHHHc
Confidence 99999999999999986432100 011223345677888999
Q ss_pred CCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhh
Q 006442 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQL 322 (645)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L----~~~g~tvIivsHd~~~l~~~ 322 (645)
|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+..++++.+.| ++.|.|+|+||||.+++..+
T Consensus 138 ~L~-~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l 216 (377)
T PRK11607 138 HMQ-EFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTM 216 (377)
T ss_pred CCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh
Confidence 996 6789999999999999999999999999999999999999999998887544 45689999999999999999
Q ss_pred cCeEEEEcCceeEEeccChHHHHH
Q 006442 323 CTKIVETEMGVSRTYEGNYSQYVL 346 (645)
Q Consensus 323 ~d~i~~l~~G~~~~~~g~~~~~~~ 346 (645)
||+|++|++|++. ..|...+.+.
T Consensus 217 aDri~vl~~G~i~-~~g~~~~~~~ 239 (377)
T PRK11607 217 AGRIAIMNRGKFV-QIGEPEEIYE 239 (377)
T ss_pred CCEEEEEeCCEEE-EEcCHHHHHh
Confidence 9999999999984 4566555443
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=353.98 Aligned_cols=203 Identities=28% Similarity=0.418 Sum_probs=180.0
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECce---ec--------ccch
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH---NV--------LPNY 492 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~---~~--------~~~~ 492 (645)
+|+++|+++.|+...+++++|+.|+.||.+|+.|||||||||||++|+|++.|++|+|.++|. |. ..++
T Consensus 2 ~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGf 81 (345)
T COG1118 2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGF 81 (345)
T ss_pred ceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeE
Confidence 488999999999999999999999999999999999999999999999999999999999998 43 2466
Q ss_pred hccchhhcCCCCCCHHHHHHhhhcc--------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCe
Q 006442 493 FEQNQAEALDLDKTVLETVAEAAED--------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (645)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~v~~~~~~--------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 564 (645)
+.|+ +.+++.+||.+||+++... ....++.++|+.+.+ .++.+++|.+|||||||||||||||+.+|++
T Consensus 82 vFQ~--YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL-~~la~ryP~QLSGGQrQRVALARALA~eP~v 158 (345)
T COG1118 82 VFQH--YALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQL-EGLADRYPAQLSGGQRQRVALARALAVEPKV 158 (345)
T ss_pred EEec--hhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcc-cchhhcCchhcChHHHHHHHHHHHhhcCCCe
Confidence 6765 4588999999999998631 223467888999999 5789999999999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 565 LVLDEPTNHLDIPSKEMLEEAISE----YKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 565 LlLDEPt~~LD~~s~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
||||||+++||..-+..|.+.|++ ++.|+|+||||.+++.++||||++|++|+|... |+.++...
T Consensus 159 LLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqv-g~p~ev~~ 227 (345)
T COG1118 159 LLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQV-GPPDEVYD 227 (345)
T ss_pred EeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeee-CCHHHHhc
Confidence 999999999999999988888765 467999999999999999999999999999864 66666543
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-43 Score=366.25 Aligned_cols=206 Identities=28% Similarity=0.430 Sum_probs=175.0
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC---------ceEEEEe
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLS 167 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~---------~~i~~v~ 167 (645)
+|+++|++++|++..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++
T Consensus 4 ~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 83 (303)
T TIGR01288 4 AIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVP 83 (303)
T ss_pred EEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEe
Confidence 5999999999998889999999999999999999999999999999999999999999998642 3599999
Q ss_pred ccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcC
Q 006442 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (645)
Q Consensus 168 Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg 247 (645)
|++.+++..|+.||+.... .. . ..+......++.++++.+|
T Consensus 84 q~~~~~~~~tv~e~l~~~~-~~--------------~------------------------~~~~~~~~~~~~~ll~~~~ 124 (303)
T TIGR01288 84 QFDNLDPEFTVRENLLVFG-RY--------------F------------------------GMSTREIEAVIPSLLEFAR 124 (303)
T ss_pred ccccCCcCCcHHHHHHHHH-HH--------------c------------------------CCCHHHHHHHHHHHHHHCC
Confidence 9998878899999985210 00 0 0011122334556778888
Q ss_pred CCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcC
Q 006442 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCT 324 (645)
Q Consensus 248 l~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~~d 324 (645)
+. +..++++.+||||||||++|||||+.+|++|||||||+|||+.++.++.++|++ .|.|||++|||++++..+||
T Consensus 125 l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d 203 (303)
T TIGR01288 125 LE-SKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCD 203 (303)
T ss_pred Ch-hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC
Confidence 86 567888999999999999999999999999999999999999999999988753 58999999999999999999
Q ss_pred eEEEEcCceeEEeccChHH
Q 006442 325 KIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 325 ~i~~l~~G~~~~~~g~~~~ 343 (645)
+|+++++|++ .+.|+.++
T Consensus 204 ~i~~l~~G~i-~~~g~~~~ 221 (303)
T TIGR01288 204 RLCVLESGRK-IAEGRPHA 221 (303)
T ss_pred EEEEEECCEE-EEEcCHHH
Confidence 9999999997 35565443
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-42 Score=414.52 Aligned_cols=328 Identities=23% Similarity=0.297 Sum_probs=232.0
Q ss_pred chhcCCCcccccccCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHH
Q 006442 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRA 317 (645)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p--~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~ 317 (645)
|..+|+.....++++.+|||||+|||+||+||..+| ++|||||||+|||+..++.|.++|+ +.|.|||+||||++
T Consensus 460 L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~ 539 (1809)
T PRK00635 460 LIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQ 539 (1809)
T ss_pred HHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH
Confidence 457788632368999999999999999999999999 8999999999999999999988764 46899999999999
Q ss_pred HHHhhcCeEEEEc------CceeEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHH
Q 006442 318 FLDQLCTKIVETE------MGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKK 391 (645)
Q Consensus 318 ~l~~~~d~i~~l~------~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 391 (645)
+.++||+|++|. +|++ .+.|+++++...... + .... +...
T Consensus 540 -vi~~aDrVi~L~pGag~~gG~I-v~~G~~~eil~~~~~---------------l--~~~~---l~~~------------ 585 (1809)
T PRK00635 540 -MISLADRIIDIGPGAGIFGGEV-LFNGSPREFLAKSDS---------------L--TAKY---LRQE------------ 585 (1809)
T ss_pred -HHHhCCEEEEEcCCcccCCCEE-EEecCHHHHhhChHH---------------H--HHHH---hcCc------------
Confidence 458999999997 4454 456665544221100 0 0000 0000
Q ss_pred HHHHHHhhhhcccccccceEEeccCCCCCCCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHH---
Q 006442 392 LERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK--- 468 (645)
Q Consensus 392 l~rl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~--- 468 (645)
.....+ .........|++++++. ..|+++||+|+.||+++|+|+||||||||++
T Consensus 586 -------~~~~~~-----------~~~~~~~~~L~l~~~~~-----~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L 642 (1809)
T PRK00635 586 -------LTIPIP-----------EKRTNSLGTLTLSKATK-----HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTL 642 (1809)
T ss_pred -------ccccCc-----------ccccCCCCeEEEecccc-----CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHH
Confidence 000000 00001223689999873 3699999999999999999999999999999
Q ss_pred ------HHHcCCCCCee----E----EEECceec------------------c---------------cchhccch----
Q 006442 469 ------LIMGLEKPRGG----E----VLLGEHNV------------------L---------------PNYFEQNQ---- 497 (645)
Q Consensus 469 ------~l~g~~~p~~G----~----i~~~g~~~------------------~---------------~~~~~q~~---- 497 (645)
.|.|...+..+ . |.+|..++ + ...|..|.
T Consensus 643 ~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~ 722 (1809)
T PRK00635 643 VPAVEEFIEQGFCSNLSIQWGAISRLVHITRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGA 722 (1809)
T ss_pred HHHHHHHhcCCCcccccccccccceeEEecCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCC
Confidence 55565332111 1 22221111 0 00011010
Q ss_pred ---------------h------------------hcCCCCCCHHHHHHhhhccc--------cHHHHHHHHhhcCCChhh
Q 006442 498 ---------------A------------------EALDLDKTVLETVAEAAEDW--------RIDDIKGLLGRCNFKADM 536 (645)
Q Consensus 498 ---------------~------------------~~l~~~~tv~e~v~~~~~~~--------~~~~~~~~L~~~~l~~~~ 536 (645)
+ +......|+.|++.+..... ...+....|+.+|+. +.
T Consensus 723 C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~~L~~vGL~-~l 801 (1809)
T PRK00635 723 CAECQGLGSITTTDNRTSIPCPSCLGKRFLPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIHALCSLGLD-YL 801 (1809)
T ss_pred CCcceeeEEEEEecCCceEECCccCCcccCHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHHHHHHcCCc-ch
Confidence 0 01123467778776543211 112222578889994 44
Q ss_pred -hccCcCcCCHhHHHHHHHHHHHc---cCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCE
Q 006442 537 -LDRKVSLLSGGEKARLAFCKFMV---KPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNR 609 (645)
Q Consensus 537 -~~~~~~~LSgGqkqrv~lAral~---~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~ 609 (645)
.++++.+|||||||||+||++|+ .+|++|||||||+|||+.+.+.+.++|.++ +.|||+||||++++ .+||+
T Consensus 802 ~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aDr 880 (1809)
T PRK00635 802 PLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADY 880 (1809)
T ss_pred hhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCE
Confidence 68999999999999999999997 699999999999999999999999999764 56999999999999 78999
Q ss_pred EEEEe------CCeEEeeCCChhHHHH
Q 006442 610 VVEVK------GSNLQDYAGDYNQVQS 630 (645)
Q Consensus 610 v~~l~------~g~i~~~~~~~~~~~~ 630 (645)
+++|. +|+++. .|..+++..
T Consensus 881 Vi~L~p~gg~~~G~iv~-~Gtpeel~~ 906 (1809)
T PRK00635 881 VLELGPEGGNLGGYLLA-SCSPEELIH 906 (1809)
T ss_pred EEEEccCCCCCCCEEEE-eCCHHHHHh
Confidence 99996 678874 577776653
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=372.20 Aligned_cols=209 Identities=25% Similarity=0.412 Sum_probs=180.9
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCc--cEEEEcCCC--------ceEEEE
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS--GNVIKAKSN--------MKIAFL 166 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~--G~I~~~~~~--------~~i~~v 166 (645)
.|+++|++++|++..+|+|+||+|++|++++|+|||||||||||++|+|+++|++ |+|.++|.. ..|+|+
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~v 84 (362)
T TIGR03258 5 GIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALL 84 (362)
T ss_pred EEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEE
Confidence 3899999999998889999999999999999999999999999999999999999 999998743 359999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhc
Q 006442 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (645)
Q Consensus 167 ~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (645)
+|++.+++.+||+||+...+.. ...+.....+++.++++.+
T Consensus 85 fQ~~~l~p~~tv~enl~~~l~~---------------------------------------~~~~~~~~~~~v~~~l~~~ 125 (362)
T TIGR03258 85 FQNYALFPHLKVEDNVAFGLRA---------------------------------------QKMPKADIAERVADALKLV 125 (362)
T ss_pred ECCcccCCCCcHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHhc
Confidence 9999999999999998643210 0012223445677889999
Q ss_pred CCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cC-CCeEEEEecCHHHHHh
Q 006442 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQ-DVPMVIISHDRAFLDQ 321 (645)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~-g~tvIivsHd~~~l~~ 321 (645)
|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+.++.+.|+ +. |.|+|+||||++++..
T Consensus 126 gL~-~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~ 204 (362)
T TIGR03258 126 GLG-DAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALT 204 (362)
T ss_pred CCC-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHH
Confidence 996 67899999999999999999999999999999999999999999999988764 23 7899999999999999
Q ss_pred hcCeEEEEcCceeEEeccChHHHHH
Q 006442 322 LCTKIVETEMGVSRTYEGNYSQYVL 346 (645)
Q Consensus 322 ~~d~i~~l~~G~~~~~~g~~~~~~~ 346 (645)
+||+|++|++|++. ..|+..+.+.
T Consensus 205 l~dri~vl~~G~i~-~~g~~~~~~~ 228 (362)
T TIGR03258 205 LADKAGIMKDGRLA-AHGEPQALYD 228 (362)
T ss_pred hCCEEEEEECCEEE-EEcCHHHHHh
Confidence 99999999999984 5576655543
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-43 Score=350.25 Aligned_cols=195 Identities=30% Similarity=0.501 Sum_probs=166.1
Q ss_pred EEEEeEEEEeCC----eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-------------
Q 006442 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------- 160 (645)
Q Consensus 98 i~i~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~------------- 160 (645)
|+++|++++|++ +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 478999999976 679999999999999999999999999999999999999999999987632
Q ss_pred -ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHH
Q 006442 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (645)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (645)
..++|++|++.+++..||.||+...... . .......++++
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~~~~ 121 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLL---------------A------------------------GVPKKERRERA 121 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhh---------------c------------------------CCCHHHHHHHH
Confidence 2599999999887788999998532100 0 00011123456
Q ss_pred HhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 006442 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (645)
Q Consensus 240 ~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd 315 (645)
.++++.+|+. +..++.+.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .++|||++||+
T Consensus 122 ~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 200 (218)
T cd03255 122 EELLERVGLG-DRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHD 200 (218)
T ss_pred HHHHHHcCCc-hhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 6778888986 456888999999999999999999999999999999999999999999888753 48899999999
Q ss_pred HHHHHhhcCeEEEEcCce
Q 006442 316 RAFLDQLCTKIVETEMGV 333 (645)
Q Consensus 316 ~~~l~~~~d~i~~l~~G~ 333 (645)
++++. +||+++++++|+
T Consensus 201 ~~~~~-~~d~v~~l~~G~ 217 (218)
T cd03255 201 PELAE-YADRIIELRDGK 217 (218)
T ss_pred HHHHh-hhcEEEEeeCCc
Confidence 99997 999999999885
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-43 Score=347.81 Aligned_cols=198 Identities=30% Similarity=0.464 Sum_probs=170.1
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------ceEEEEecc
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------~~i~~v~Q~ 169 (645)
|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~ 80 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQN 80 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecC
Confidence 478999999998889999999999999999999999999999999999999999999987642 259999999
Q ss_pred CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCC
Q 006442 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (645)
Q Consensus 170 ~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (645)
+.+++..|++||+...... . .......++++.++++.+|+.
T Consensus 81 ~~~~~~~tv~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l~ 121 (213)
T cd03301 81 YALYPHMTVYDNIAFGLKL---------------R------------------------KVPKDEIDERVREVAELLQIE 121 (213)
T ss_pred hhhccCCCHHHHHHHHHHh---------------c------------------------CCCHHHHHHHHHHHHHHcCCH
Confidence 9887788999998532100 0 011112234566778888886
Q ss_pred cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCe
Q 006442 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (645)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d~ 325 (645)
+..++++.+||||||||++|||||+.+|++|||||||+|||+.++.++.++|++ .++|||++|||++++..+||+
T Consensus 122 -~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~ 200 (213)
T cd03301 122 -HLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADR 200 (213)
T ss_pred -HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCe
Confidence 567888999999999999999999999999999999999999999999988743 489999999999999999999
Q ss_pred EEEEcCceeE
Q 006442 326 IVETEMGVSR 335 (645)
Q Consensus 326 i~~l~~G~~~ 335 (645)
|+++++|++.
T Consensus 201 i~~l~~g~~~ 210 (213)
T cd03301 201 IAVMNDGQIQ 210 (213)
T ss_pred EEEEECCEEE
Confidence 9999999874
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=373.63 Aligned_cols=207 Identities=27% Similarity=0.423 Sum_probs=177.6
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------ceEEEEec
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------~~i~~v~Q 168 (645)
.|+++|++++|++..+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++|.. ..|+|++|
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q 82 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQ 82 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeC
Confidence 4899999999998889999999999999999999999999999999999999999999997642 25999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCC
Q 006442 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (645)
Q Consensus 169 ~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (645)
++.+++.+||+||+...... ...+.....+++.++++.+|+
T Consensus 83 ~~~l~~~~tv~eni~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~lgL 123 (369)
T PRK11000 83 SYALYPHLSVAENMSFGLKL---------------------------------------AGAKKEEINQRVNQVAEVLQL 123 (369)
T ss_pred CcccCCCCCHHHHHHhHHhh---------------------------------------cCCCHHHHHHHHHHHHHHcCC
Confidence 99988899999998632110 001112234567788889999
Q ss_pred CcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcC
Q 006442 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCT 324 (645)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d 324 (645)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|+ +.|.|+|+||||++++..+||
T Consensus 124 ~-~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d 202 (369)
T PRK11000 124 A-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLAD 202 (369)
T ss_pred h-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCC
Confidence 6 67889999999999999999999999999999999999999999999887764 348999999999999999999
Q ss_pred eEEEEcCceeEEeccChHHH
Q 006442 325 KIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 325 ~i~~l~~G~~~~~~g~~~~~ 344 (645)
+|++|++|++. ..|+..+.
T Consensus 203 ~i~vl~~G~i~-~~g~~~~i 221 (369)
T PRK11000 203 KIVVLDAGRVA-QVGKPLEL 221 (369)
T ss_pred EEEEEECCEEE-EEcCHHHH
Confidence 99999999984 44665444
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-43 Score=348.22 Aligned_cols=197 Identities=29% Similarity=0.504 Sum_probs=168.1
Q ss_pred cEEEEeEEEEe-CCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-------------ce
Q 006442 97 GVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MK 162 (645)
Q Consensus 97 ~i~i~nls~~y-~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-------------~~ 162 (645)
+|+++|++++| ++.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.+ ..
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 37899999999 46789999999999999999999999999999999999999999999987632 25
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhh
Q 006442 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (645)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (645)
++|++|++.+++..|+.+|+...... . .......++++.++
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~ 121 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEV---------------R------------------------GKKEREIQRRVGAA 121 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHH
Confidence 99999999887788999998532100 0 00111223456677
Q ss_pred chhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHH
Q 006442 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFL 319 (645)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l 319 (645)
++.+|+. +..++.+.+||||||||++|||||+.+|++|||||||+|||+.++.++.++|++ .++|||++||+++++
T Consensus 122 l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~ 200 (214)
T TIGR02673 122 LRQVGLE-HKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLV 200 (214)
T ss_pred HHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 8888886 567888999999999999999999999999999999999999999999988753 589999999999999
Q ss_pred HhhcCeEEEEcCce
Q 006442 320 DQLCTKIVETEMGV 333 (645)
Q Consensus 320 ~~~~d~i~~l~~G~ 333 (645)
..+||+++++++|+
T Consensus 201 ~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 201 DRVAHRVIILDDGR 214 (214)
T ss_pred HHhcCEEEEecCCC
Confidence 99999999998874
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=348.17 Aligned_cols=197 Identities=31% Similarity=0.434 Sum_probs=168.5
Q ss_pred EEEEeEEEEeCC----eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----ceEEEEec
Q 006442 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQ 168 (645)
Q Consensus 98 i~i~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-----~~i~~v~Q 168 (645)
|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 478999999987 789999999999999999999999999999999999999999999998743 36999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCC
Q 006442 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (645)
Q Consensus 169 ~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (645)
++.+++..|+.||+...... . ........+++.++++.+|+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l 121 (220)
T cd03293 81 QDALLPWLTVLDNVALGLEL---------------Q------------------------GVPKAEARERAEELLELVGL 121 (220)
T ss_pred ccccccCCCHHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHHHHcCC
Confidence 99887778999998532100 0 00111123456677888888
Q ss_pred CcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcC
Q 006442 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (645)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d 324 (645)
. +..++.+.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++ .+.|||++||+++++..+||
T Consensus 122 ~-~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d 200 (220)
T cd03293 122 S-GFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLAD 200 (220)
T ss_pred h-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCC
Confidence 6 567888999999999999999999999999999999999999999999988743 47899999999999999999
Q ss_pred eEEEEc--Ccee
Q 006442 325 KIVETE--MGVS 334 (645)
Q Consensus 325 ~i~~l~--~G~~ 334 (645)
++++++ +|++
T Consensus 201 ~i~~l~~~~G~i 212 (220)
T cd03293 201 RVVVLSARPGRI 212 (220)
T ss_pred EEEEEECCCCEE
Confidence 999999 6886
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=369.32 Aligned_cols=212 Identities=29% Similarity=0.437 Sum_probs=180.2
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------ceEEEEec
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------~~i~~v~Q 168 (645)
+|+++|++++|++..+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.+ ..|+|++|
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q 81 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQ 81 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEec
Confidence 4899999999998889999999999999999999999999999999999999999999998743 35999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCC
Q 006442 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (645)
Q Consensus 169 ~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (645)
++.+++.+||.||+...+... .. ....+..+..+++.++++.+|+
T Consensus 82 ~~~l~p~~tv~eni~~~~~~~--------------~~---------------------~~~~~~~~~~~~~~~~l~~~~L 126 (353)
T PRK10851 82 HYALFRHMTVFDNIAFGLTVL--------------PR---------------------RERPNAAAIKAKVTQLLEMVQL 126 (353)
T ss_pred CcccCCCCcHHHHHHhhhhhc--------------cc---------------------ccCCCHHHHHHHHHHHHHHcCC
Confidence 999988999999986332100 00 0001122344567788999999
Q ss_pred CcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcC
Q 006442 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCT 324 (645)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d 324 (645)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|+ +.|.|+|+||||++++..+||
T Consensus 127 ~-~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~D 205 (353)
T PRK10851 127 A-HLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVAD 205 (353)
T ss_pred c-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 6 67899999999999999999999999999999999999999999998887764 348999999999999999999
Q ss_pred eEEEEcCceeEEeccChHHHH
Q 006442 325 KIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 325 ~i~~l~~G~~~~~~g~~~~~~ 345 (645)
+|++|++|++. ..|...+.+
T Consensus 206 ri~vl~~G~i~-~~g~~~~i~ 225 (353)
T PRK10851 206 RVVVMSQGNIE-QAGTPDQVW 225 (353)
T ss_pred EEEEEECCEEE-EEcCHHHHH
Confidence 99999999984 556665544
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=352.19 Aligned_cols=210 Identities=29% Similarity=0.444 Sum_probs=174.2
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------ceEEEEec
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------~~i~~v~Q 168 (645)
.|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|++|
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 81 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQ 81 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEec
Confidence 3899999999998889999999999999999999999999999999999999999999998642 25999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCC
Q 006442 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (645)
Q Consensus 169 ~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (645)
++.+++..||.||+....... . . .. ........+++.++++.+|+
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~~-~-------~---~~------------------------~~~~~~~~~~~~~~l~~~~l 126 (239)
T cd03296 82 HYALFRHMTVFDNVAFGLRVK-P-------R---SE------------------------RPPEAEIRAKVHELLKLVQL 126 (239)
T ss_pred CCcccCCCCHHHHHhhhhhhc-c-------c---cc------------------------cCCHHHHHHHHHHHHHHcCC
Confidence 998877889999985321100 0 0 00 00011123345677888888
Q ss_pred CcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcC
Q 006442 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (645)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d 324 (645)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .|+|||++|||++++..+||
T Consensus 127 ~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d 205 (239)
T cd03296 127 D-WLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVAD 205 (239)
T ss_pred h-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 5 567888999999999999999999999999999999999999999999988753 38899999999999999999
Q ss_pred eEEEEcCceeEEeccChHH
Q 006442 325 KIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 325 ~i~~l~~G~~~~~~g~~~~ 343 (645)
+++++++|++. ..|..++
T Consensus 206 ~i~~l~~G~i~-~~~~~~~ 223 (239)
T cd03296 206 RVVVMNKGRIE-QVGTPDE 223 (239)
T ss_pred EEEEEECCeEE-EecCHHH
Confidence 99999999974 4455443
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=344.08 Aligned_cols=198 Identities=28% Similarity=0.515 Sum_probs=170.2
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC------ceEEEEeccCc
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------MKIAFLSQEFE 171 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~------~~i~~v~Q~~~ 171 (645)
|+++|+++.|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++|++.
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~ 80 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERG 80 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCc
Confidence 478999999988889999999999999999999999999999999999999999999998754 35999999998
Q ss_pred cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcc
Q 006442 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (645)
Q Consensus 172 ~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~ 251 (645)
+++..|+.||+..... .. ........+.+.++++.+|+. .
T Consensus 81 ~~~~~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~~~l~-~ 120 (210)
T cd03269 81 LYPKMKVIDQLVYLAQ---------------LK------------------------GLKKEEARRRIDEWLERLELS-E 120 (210)
T ss_pred CCcCCcHHHHHHHHHH---------------Hc------------------------CCChHHHHHHHHHHHHHcCCh-H
Confidence 8778899999752100 00 001112234566778888886 5
Q ss_pred cccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcCeEEE
Q 006442 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVE 328 (645)
Q Consensus 252 ~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~~d~i~~ 328 (645)
..++++.+||||||||++|||||+.+|++|||||||+|||+.+++++.++|++ .++|||++||+++++.++||++++
T Consensus 121 ~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~ 200 (210)
T cd03269 121 YANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLL 200 (210)
T ss_pred HHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEE
Confidence 67788999999999999999999999999999999999999999999888753 478999999999999999999999
Q ss_pred EcCceeE
Q 006442 329 TEMGVSR 335 (645)
Q Consensus 329 l~~G~~~ 335 (645)
+++|++.
T Consensus 201 l~~g~i~ 207 (210)
T cd03269 201 LNKGRAV 207 (210)
T ss_pred EeCCEEE
Confidence 9999874
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=357.02 Aligned_cols=210 Identities=21% Similarity=0.321 Sum_probs=176.0
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-------------c
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------M 161 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-------------~ 161 (645)
+.+|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 5 ANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred cceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 346999999999998889999999999999999999999999999999999999999999988632 2
Q ss_pred eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHh
Q 006442 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (645)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (645)
.++|++|++.+++..|+.||+...+... . ..+......++.+
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~--------------~------------------------~~~~~~~~~~~~~ 126 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREH--------------T------------------------QLPAPLLHSTVMM 126 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHc--------------c------------------------CCCHHHHHHHHHH
Confidence 5999999998877889999985321100 0 0000112234566
Q ss_pred hchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHH
Q 006442 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRA 317 (645)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~ 317 (645)
+++.+|+. +..++.+.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|++ .|+|||++|||++
T Consensus 127 ~l~~~gl~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~ 205 (269)
T PRK11831 127 KLEAVGLR-GAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP 205 (269)
T ss_pred HHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence 78888986 567888999999999999999999999999999999999999999999887753 3789999999999
Q ss_pred HHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 318 FLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 318 ~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
++..+||+++++++|++. +.|..+++
T Consensus 206 ~~~~~~d~v~~l~~G~i~-~~g~~~~~ 231 (269)
T PRK11831 206 EVLSIADHAYIVADKKIV-AHGSAQAL 231 (269)
T ss_pred HHHHhhCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999974 55665443
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=346.91 Aligned_cols=199 Identities=30% Similarity=0.477 Sum_probs=170.6
Q ss_pred cEEEEeEEEEeCCe----eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC---------ceE
Q 006442 97 GVKLENISKSYKGV----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKI 163 (645)
Q Consensus 97 ~i~i~nls~~y~~~----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~---------~~i 163 (645)
+|+++|++++|++. ++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 80 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence 37899999999876 79999999999999999999999999999999999999999999998643 259
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhc
Q 006442 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (645)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (645)
+|++|++.+++..||.||+...... . ........+++.+++
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l 121 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGL---------------Y------------------------GLKGDELTARLEELA 121 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHH
Confidence 9999999887778999998521100 0 001112234566778
Q ss_pred hhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHH
Q 006442 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLD 320 (645)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~ 320 (645)
+.+|+. +..++++.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .|+|||++|||++++.
T Consensus 122 ~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~ 200 (218)
T cd03266 122 DRLGME-ELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVE 200 (218)
T ss_pred HHcCCH-HHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 888885 567888999999999999999999999999999999999999999999888753 5899999999999999
Q ss_pred hhcCeEEEEcCceeE
Q 006442 321 QLCTKIVETEMGVSR 335 (645)
Q Consensus 321 ~~~d~i~~l~~G~~~ 335 (645)
.+||+++++++|++.
T Consensus 201 ~~~d~i~~l~~G~i~ 215 (218)
T cd03266 201 RLCDRVVVLHRGRVV 215 (218)
T ss_pred HhcCEEEEEECCEEe
Confidence 999999999999874
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=367.52 Aligned_cols=206 Identities=29% Similarity=0.491 Sum_probs=174.8
Q ss_pred cEEEEeEEEEeC----CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC------------
Q 006442 97 GVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (645)
Q Consensus 97 ~i~i~nls~~y~----~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~------------ 160 (645)
+|+++|++|+|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 489999999997 3679999999999999999999999999999999999999999999998642
Q ss_pred -ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHH
Q 006442 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (645)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (645)
..|+|++|++.+++..||.||+...... . ..+.....+++
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~---------------~------------------------~~~~~~~~~~~ 121 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLEL---------------A------------------------GTPKAEIKARV 121 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHH---------------c------------------------CCCHHHHHHHH
Confidence 3599999999887889999998532100 0 01111223456
Q ss_pred HhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 006442 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (645)
Q Consensus 240 ~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd 315 (645)
.++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++ .|+|||++|||
T Consensus 122 ~~~l~~~gL~-~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~ 200 (343)
T PRK11153 122 TELLELVGLS-DKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHE 200 (343)
T ss_pred HHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 6788888986 567889999999999999999999999999999999999999999999988753 48999999999
Q ss_pred HHHHHhhcCeEEEEcCceeEEeccChHH
Q 006442 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 316 ~~~l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
++++.++||+|++|++|++. +.|...+
T Consensus 201 ~~~i~~~~d~v~~l~~G~i~-~~g~~~~ 227 (343)
T PRK11153 201 MDVVKRICDRVAVIDAGRLV-EQGTVSE 227 (343)
T ss_pred HHHHHHhCCEEEEEECCEEE-EEcCHHH
Confidence 99999999999999999984 4565443
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=360.80 Aligned_cols=205 Identities=25% Similarity=0.488 Sum_probs=176.6
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC---------ceEEEEec
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~---------~~i~~v~Q 168 (645)
++++|++|+|++..+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+ ..+||++|
T Consensus 3 l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q 82 (301)
T TIGR03522 3 IRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPE 82 (301)
T ss_pred EEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecC
Confidence 899999999998889999999999999999999999999999999999999999999998743 25999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCC
Q 006442 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (645)
Q Consensus 169 ~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (645)
++.+++..|+.||+..... +. ..+.....+++.++++.+|+
T Consensus 83 ~~~l~~~~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~~gl 123 (301)
T TIGR03522 83 HNPLYLDMYVREYLQFIAG---------------IY------------------------GMKGQLLKQRVEEMIELVGL 123 (301)
T ss_pred CCCCCCCCcHHHHHHHHHH---------------Hc------------------------CCCHHHHHHHHHHHHHHCCC
Confidence 9998888999999752100 00 01111223456678888898
Q ss_pred CcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcCeE
Q 006442 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKI 326 (645)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~d~i 326 (645)
. +..++++.+||||||||++|||||+.+|++|||||||+|||+.+++++.++|++ .++|||++||+++++.++||||
T Consensus 124 ~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i 202 (301)
T TIGR03522 124 R-PEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRV 202 (301)
T ss_pred c-hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEE
Confidence 6 567899999999999999999999999999999999999999999999988753 3789999999999999999999
Q ss_pred EEEcCceeEEeccChHH
Q 006442 327 VETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 327 ~~l~~G~~~~~~g~~~~ 343 (645)
+++++|++. +.|+.++
T Consensus 203 ~~l~~G~i~-~~g~~~~ 218 (301)
T TIGR03522 203 IIINKGKIV-ADKKLDE 218 (301)
T ss_pred EEEECCEEE-EeCCHHH
Confidence 999999984 6677554
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=349.88 Aligned_cols=214 Identities=28% Similarity=0.425 Sum_probs=174.0
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----------ceEEEE
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFL 166 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-----------~~i~~v 166 (645)
|+++|++++|++.++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 80 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEE
Confidence 468999999988889999999999999999999999999999999999999999999987642 249999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhc
Q 006442 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (645)
Q Consensus 167 ~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (645)
+|++.+++..||.||+......... ..+. .. ..........+++.++++.+
T Consensus 81 ~q~~~l~~~~tv~~~l~~~~~~~~~-----~~~~---~~---------------------~~~~~~~~~~~~~~~~l~~~ 131 (236)
T cd03219 81 FQIPRLFPELTVLENVMVAAQARTG-----SGLL---LA---------------------RARREEREARERAEELLERV 131 (236)
T ss_pred ecccccccCCCHHHHHHHHHhhccc-----cccc---cc---------------------cccccHHHHHHHHHHHHHHc
Confidence 9999888888999998532110000 0000 00 00000112234567788888
Q ss_pred CCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhc
Q 006442 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLC 323 (645)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~~ 323 (645)
|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .|+|||++|||++++..+|
T Consensus 132 ~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~ 210 (236)
T cd03219 132 GLA-DLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLA 210 (236)
T ss_pred Ccc-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhC
Confidence 986 567888999999999999999999999999999999999999999999988743 5889999999999999999
Q ss_pred CeEEEEcCceeEEeccChH
Q 006442 324 TKIVETEMGVSRTYEGNYS 342 (645)
Q Consensus 324 d~i~~l~~G~~~~~~g~~~ 342 (645)
|+++++++|++. ..|+.+
T Consensus 211 d~i~~l~~G~i~-~~~~~~ 228 (236)
T cd03219 211 DRVTVLDQGRVI-AEGTPD 228 (236)
T ss_pred CEEEEEeCCEEE-eecCHH
Confidence 999999999874 445543
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=345.96 Aligned_cols=200 Identities=26% Similarity=0.444 Sum_probs=169.6
Q ss_pred cEEEEeEEEEe-CCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-------------ce
Q 006442 97 GVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MK 162 (645)
Q Consensus 97 ~i~i~nls~~y-~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-------------~~ 162 (645)
+|+++|++++| +++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 37899999999 66789999999999999999999999999999999999999999999987642 25
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhh
Q 006442 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (645)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (645)
++|++|++.+++..|+.||+...... . ..+......++.++
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~ 121 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLII---------------A------------------------GASGDDIRRRVSAA 121 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHh---------------c------------------------CCCHHHHHHHHHHH
Confidence 99999999887889999998532100 0 01111223345667
Q ss_pred chhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHH
Q 006442 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (645)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l 319 (645)
++.+|+. +..++.+.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|+ +.+.|||++|||++++
T Consensus 122 l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~ 200 (222)
T PRK10908 122 LDKVGLL-DKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLI 200 (222)
T ss_pred HHHcCCh-hhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 8888886 46788899999999999999999999999999999999999999999988764 3478999999999999
Q ss_pred HhhcCeEEEEcCceeEE
Q 006442 320 DQLCTKIVETEMGVSRT 336 (645)
Q Consensus 320 ~~~~d~i~~l~~G~~~~ 336 (645)
..+||+|+++++|++..
T Consensus 201 ~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 201 SRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHhCCEEEEEECCEEcc
Confidence 99999999999998743
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=334.28 Aligned_cols=209 Identities=30% Similarity=0.437 Sum_probs=181.0
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc-----------eEEE
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KIAF 165 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~-----------~i~~ 165 (645)
.+.++|+.|+|+.++++++|||+|++||++||+|||||||||.+.++.|+++|++|+|.+++.+. .|||
T Consensus 4 ~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigY 83 (243)
T COG1137 4 TLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGY 83 (243)
T ss_pred EEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCccc
Confidence 48999999999999999999999999999999999999999999999999999999999987643 5999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChh--cHHHHHHhhc
Q 006442 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD--TLDAKVSKLM 243 (645)
Q Consensus 166 v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~ll 243 (645)
+||++.+|..+||.||++..+.-.. .+.+ +-..+++++|
T Consensus 84 LpQE~SIFr~LtV~dNi~~vlE~~~---------------------------------------~d~~~~~~~~~l~~LL 124 (243)
T COG1137 84 LPQEASIFRKLTVEDNIMAVLEIRE---------------------------------------KDLKKAERKEELDALL 124 (243)
T ss_pred ccccchHhhcCcHHHHHHHHHhhhh---------------------------------------cchhHHHHHHHHHHHH
Confidence 9999999999999999974321100 0011 1123466888
Q ss_pred hhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH---HHccCCCeEEEEecCHHHHH
Q 006442 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG---YLGKQDVPMVIISHDRAFLD 320 (645)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~---~L~~~g~tvIivsHd~~~l~ 320 (645)
++|.+. +..+++..+||||||+|+.|||||+.+|+++||||||+|+||.+...+.. .|+..|..|+++.|+..+..
T Consensus 125 ~ef~i~-hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL 203 (243)
T COG1137 125 EEFHIT-HLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETL 203 (243)
T ss_pred HHhchH-HHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHH
Confidence 889986 78899999999999999999999999999999999999999998777665 56778999999999999999
Q ss_pred hhcCeEEEEcCceeEEeccChHHHHH
Q 006442 321 QLCTKIVETEMGVSRTYEGNYSQYVL 346 (645)
Q Consensus 321 ~~~d~i~~l~~G~~~~~~g~~~~~~~ 346 (645)
.+|||.+++.+|++ .+.|+.++.+.
T Consensus 204 ~i~dRaYIi~~G~v-la~G~p~ei~~ 228 (243)
T COG1137 204 DICDRAYIISDGKV-LAEGSPEEIVN 228 (243)
T ss_pred hhhheEEEEecCeE-EecCCHHHHhc
Confidence 99999999999998 56788766544
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=344.01 Aligned_cols=192 Identities=31% Similarity=0.540 Sum_probs=164.6
Q ss_pred EEEeEEEEeCC-eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-------ceEEEEeccC
Q 006442 99 KLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIAFLSQEF 170 (645)
Q Consensus 99 ~i~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-------~~i~~v~Q~~ 170 (645)
+++|++++|++ +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|++|++
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence 36899999987 789999999999999999999999999999999999999999999998754 2699999997
Q ss_pred cc-CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCC
Q 006442 171 EV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (645)
Q Consensus 171 ~~-~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (645)
.. ++..|+.||+...... .. ....++.++++.+|+.
T Consensus 81 ~~~~~~~tv~e~l~~~~~~-----------------------------------------~~--~~~~~~~~~l~~~~l~ 117 (205)
T cd03226 81 DYQLFTDSVREELLLGLKE-----------------------------------------LD--AGNEQAETVLKDLDLY 117 (205)
T ss_pred hhhhhhccHHHHHhhhhhh-----------------------------------------cC--ccHHHHHHHHHHcCCc
Confidence 42 3567999998532100 00 0123456778888886
Q ss_pred cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCeE
Q 006442 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKI 326 (645)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d~i 326 (645)
+..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|+ +.|.|||++||+++++..+||++
T Consensus 118 -~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i 196 (205)
T cd03226 118 -ALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRV 196 (205)
T ss_pred -hhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE
Confidence 56788899999999999999999999999999999999999999999998875 35899999999999999999999
Q ss_pred EEEcCcee
Q 006442 327 VETEMGVS 334 (645)
Q Consensus 327 ~~l~~G~~ 334 (645)
+++++|++
T Consensus 197 ~~l~~G~i 204 (205)
T cd03226 197 LLLANGAI 204 (205)
T ss_pred EEEECCEE
Confidence 99999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=342.99 Aligned_cols=197 Identities=29% Similarity=0.458 Sum_probs=168.6
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC---------ceEEEEec
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~---------~~i~~v~Q 168 (645)
|+++|++|+|+++++++|+||+|++| +++|+||||||||||+++|+|+++|++|+|.++|.. ..++|++|
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 79 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQ 79 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecC
Confidence 47899999998888999999999999 999999999999999999999999999999998743 35999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCC
Q 006442 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (645)
Q Consensus 169 ~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (645)
++.+++..||.||+...... . ..+....++.+.++++.+|+
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l 120 (211)
T cd03264 80 EFGVYPNFTVREFLDYIAWL---------------K------------------------GIPSKEVKARVDEVLELVNL 120 (211)
T ss_pred CCcccccCCHHHHHHHHHHH---------------h------------------------CCCHHHHHHHHHHHHHHCCC
Confidence 99887788999998521100 0 00111223455677888888
Q ss_pred CcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcCeE
Q 006442 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKI 326 (645)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~d~i 326 (645)
. +..++++.+||||||||++|||||+.+|++|||||||+|||+.+++++.++|++ .+.|||++|||++++.++||++
T Consensus 121 ~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i 199 (211)
T cd03264 121 G-DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQV 199 (211)
T ss_pred H-HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEE
Confidence 6 566888999999999999999999999999999999999999999999988853 3689999999999999999999
Q ss_pred EEEcCceeE
Q 006442 327 VETEMGVSR 335 (645)
Q Consensus 327 ~~l~~G~~~ 335 (645)
+++++|++.
T Consensus 200 ~~l~~g~i~ 208 (211)
T cd03264 200 AVLNKGKLV 208 (211)
T ss_pred EEEECCEEE
Confidence 999999873
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-42 Score=350.71 Aligned_cols=210 Identities=24% Similarity=0.417 Sum_probs=177.1
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC---------------
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------- 160 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------------- 160 (645)
..|+++|+++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|..
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 83 (257)
T PRK10619 4 NKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVAD 83 (257)
T ss_pred ccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccccc
Confidence 35999999999998889999999999999999999999999999999999999999999988632
Q ss_pred --------ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCCh
Q 006442 161 --------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (645)
Q Consensus 161 --------~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (645)
..++|++|++.+++..|++||+...... +. ....
T Consensus 84 ~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~--------------~~------------------------~~~~ 125 (257)
T PRK10619 84 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ--------------VL------------------------GLSK 125 (257)
T ss_pred chHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHH--------------hC------------------------CCCH
Confidence 2599999999887788999998532100 00 0011
Q ss_pred hcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeE
Q 006442 233 DTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPM 309 (645)
Q Consensus 233 ~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tv 309 (645)
...++++.++++.+|+.....++++.+||||||||++|||||+.+|++|||||||++||+.+++++.++|+ +.|+||
T Consensus 126 ~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~ti 205 (257)
T PRK10619 126 QEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTM 205 (257)
T ss_pred HHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEE
Confidence 12344566788888986444578899999999999999999999999999999999999999999998764 358999
Q ss_pred EEEecCHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 310 VIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 310 IivsHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
|+||||++++..+||+|+++++|++. +.|+++++
T Consensus 206 iivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 239 (257)
T PRK10619 206 VVVTHEMGFARHVSSHVIFLHQGKIE-EEGAPEQL 239 (257)
T ss_pred EEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHh
Confidence 99999999999999999999999984 55766554
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=347.17 Aligned_cols=205 Identities=28% Similarity=0.427 Sum_probs=172.9
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----------ceEEEE
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFL 166 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-----------~~i~~v 166 (645)
|+++|++++|+++.+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYL 80 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEe
Confidence 478999999998889999999999999999999999999999999999999999999987642 249999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhc
Q 006442 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (645)
Q Consensus 167 ~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (645)
+|++.+++..|++||+....... .........++.++++.+
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~~~ 121 (232)
T cd03218 81 PQEASIFRKLTVEENILAVLEIR---------------------------------------GLSKKEREEKLEELLEEF 121 (232)
T ss_pred cCCccccccCcHHHHHHHHHHhc---------------------------------------CCCHHHHHHHHHHHHHHc
Confidence 99998877889999985321000 000111233456778888
Q ss_pred CCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhc
Q 006442 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLC 323 (645)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~ 323 (645)
|+. +..++.+.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|+ +.++|||++|||++++..+|
T Consensus 122 ~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~ 200 (232)
T cd03218 122 HIT-HLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSIT 200 (232)
T ss_pred CCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC
Confidence 886 56788899999999999999999999999999999999999999999988774 35889999999999999999
Q ss_pred CeEEEEcCceeEEeccChHH
Q 006442 324 TKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 324 d~i~~l~~G~~~~~~g~~~~ 343 (645)
|+|+++++|++. ..|+.++
T Consensus 201 d~i~~l~~G~i~-~~~~~~~ 219 (232)
T cd03218 201 DRAYIIYEGKVL-AEGTPEE 219 (232)
T ss_pred CEEEEEECCeEE-EEeCHHH
Confidence 999999999974 4555443
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=343.61 Aligned_cols=196 Identities=28% Similarity=0.450 Sum_probs=166.9
Q ss_pred EEEEeEEEEeCC-eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-------------ceE
Q 006442 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MKI 163 (645)
Q Consensus 98 i~i~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-------------~~i 163 (645)
|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 478999999965 579999999999999999999999999999999999999999999987642 259
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhc
Q 006442 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (645)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (645)
+|++|++.+++..|+.||+...... . ........+++.+++
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l 121 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEV---------------T------------------------GVPPREIRKRVPAAL 121 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHH
Confidence 9999999887888999998532100 0 001112234566778
Q ss_pred hhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHH
Q 006442 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (645)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~ 320 (645)
+.+|+. +..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+ +.++|||++||+++++.
T Consensus 122 ~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~ 200 (214)
T cd03292 122 ELVGLS-HKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVD 200 (214)
T ss_pred HHcCCH-HHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 888886 56788899999999999999999999999999999999999999999988774 35899999999999999
Q ss_pred hhcCeEEEEcCce
Q 006442 321 QLCTKIVETEMGV 333 (645)
Q Consensus 321 ~~~d~i~~l~~G~ 333 (645)
.+||+++++++|+
T Consensus 201 ~~~d~i~~l~~G~ 213 (214)
T cd03292 201 TTRHRVIALERGK 213 (214)
T ss_pred HhCCEEEEEeCCc
Confidence 9999999999885
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=351.92 Aligned_cols=199 Identities=24% Similarity=0.324 Sum_probs=170.0
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----ceEEEEeccCc
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEFE 171 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-----~~i~~v~Q~~~ 171 (645)
+|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++|++.
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~ 80 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEG 80 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCc
Confidence 3789999999988889999999999999999999999999999999999999999999997643 25899999998
Q ss_pred cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcc
Q 006442 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (645)
Q Consensus 172 ~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~ 251 (645)
+++..||.+|+...... . .+......+++.++++.+|+. +
T Consensus 81 ~~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~gl~-~ 120 (255)
T PRK11248 81 LLPWRNVQDNVAFGLQL---------------A------------------------GVEKMQRLEIAHQMLKKVGLE-G 120 (255)
T ss_pred cCCCCcHHHHHHhHHHH---------------c------------------------CCCHHHHHHHHHHHHHHcCCh-h
Confidence 87778999998532100 0 001112234567788888986 5
Q ss_pred cccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCeEE
Q 006442 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIV 327 (645)
Q Consensus 252 ~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d~i~ 327 (645)
..++++.+||||||||++|||||+.+|++|||||||++||+.++.++.++|++ .|+|||++|||++++..+||+++
T Consensus 121 ~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~ 200 (255)
T PRK11248 121 AEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELV 200 (255)
T ss_pred HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 67888999999999999999999999999999999999999999999988753 48999999999999999999999
Q ss_pred EEc--CceeE
Q 006442 328 ETE--MGVSR 335 (645)
Q Consensus 328 ~l~--~G~~~ 335 (645)
+++ +|++.
T Consensus 201 ~l~~~~G~i~ 210 (255)
T PRK11248 201 LLSPGPGRVV 210 (255)
T ss_pred EEeCCCcEEE
Confidence 998 47763
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=344.33 Aligned_cols=202 Identities=28% Similarity=0.443 Sum_probs=170.4
Q ss_pred EEEEeEEEEeCC--eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC---------ceEEEE
Q 006442 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFL 166 (645)
Q Consensus 98 i~i~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~---------~~i~~v 166 (645)
|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 578999999987 789999999999999999999999999999999999999999999998753 249999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhc
Q 006442 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (645)
Q Consensus 167 ~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (645)
+|++.+++..|+.+|+...... . ........+++.++++.+
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~ 121 (220)
T cd03263 81 PQFDALFDELTVREHLRFYARL---------------K------------------------GLPKSEIKEEVELLLRVL 121 (220)
T ss_pred cCcCCccccCCHHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHHHHc
Confidence 9999887788999997521100 0 001112234456777888
Q ss_pred CCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcC
Q 006442 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCT 324 (645)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~d 324 (645)
|+. +..++++.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||++||+++++.++||
T Consensus 122 ~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d 200 (220)
T cd03263 122 GLT-DKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCD 200 (220)
T ss_pred CCH-HHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcC
Confidence 885 566788999999999999999999999999999999999999999999988753 35899999999999999999
Q ss_pred eEEEEcCceeEEeccC
Q 006442 325 KIVETEMGVSRTYEGN 340 (645)
Q Consensus 325 ~i~~l~~G~~~~~~g~ 340 (645)
+++++++|++. ..|+
T Consensus 201 ~i~~l~~g~i~-~~~~ 215 (220)
T cd03263 201 RIAIMSDGKLR-CIGS 215 (220)
T ss_pred EEEEEECCEEE-ecCC
Confidence 99999999874 4444
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=352.74 Aligned_cols=194 Identities=25% Similarity=0.411 Sum_probs=169.2
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----ceEEEEeccC
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEF 170 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-----~~i~~v~Q~~ 170 (645)
+.|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.. ..++|++|++
T Consensus 11 ~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~ 90 (257)
T PRK11247 11 TPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDA 90 (257)
T ss_pred CcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCc
Confidence 45999999999998889999999999999999999999999999999999999999999987643 3699999999
Q ss_pred ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCc
Q 006442 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (645)
Q Consensus 171 ~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~ 250 (645)
.+++..||+||+...+.. ..+.++.++++.+|+.
T Consensus 91 ~l~~~~tv~enl~~~~~~---------------------------------------------~~~~~~~~~l~~~gl~- 124 (257)
T PRK11247 91 RLLPWKKVIDNVGLGLKG---------------------------------------------QWRDAALQALAAVGLA- 124 (257)
T ss_pred cCCCCCcHHHHHHhcccc---------------------------------------------hHHHHHHHHHHHcCCh-
Confidence 887778999998532100 0012345667778885
Q ss_pred ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcCeE
Q 006442 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKI 326 (645)
Q Consensus 251 ~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d~i 326 (645)
+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|+ +.++|||+||||++++..+||+|
T Consensus 125 ~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i 204 (257)
T PRK11247 125 DRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRV 204 (257)
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 46688899999999999999999999999999999999999999999988774 34899999999999999999999
Q ss_pred EEEcCceeE
Q 006442 327 VETEMGVSR 335 (645)
Q Consensus 327 ~~l~~G~~~ 335 (645)
+++++|++.
T Consensus 205 ~~l~~G~i~ 213 (257)
T PRK11247 205 LLIEEGKIG 213 (257)
T ss_pred EEEECCEEE
Confidence 999999874
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-42 Score=349.43 Aligned_cols=208 Identities=26% Similarity=0.450 Sum_probs=174.6
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------------
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------------- 160 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~---------------- 160 (645)
+|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|..
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 5999999999988889999999999999999999999999999999999999999999887531
Q ss_pred --ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHH
Q 006442 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (645)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (645)
..++|++|++.+++..|+.||+...... .. ........++
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~--------------~~------------------------~~~~~~~~~~ 124 (250)
T PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVI--------------VK------------------------GEPKEEATAR 124 (250)
T ss_pred hhhhEEEEecCcccCCCCCHHHHHHHHHHH--------------hc------------------------CCCHHHHHHH
Confidence 2599999999887788999998532100 00 0011122345
Q ss_pred HHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecC
Q 006442 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHD 315 (645)
Q Consensus 239 i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd 315 (645)
+.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.+++++.++|+ +.|.|||++|||
T Consensus 125 ~~~~l~~~gl~-~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~ 203 (250)
T PRK11264 125 ARELLAKVGLA-GKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHE 203 (250)
T ss_pred HHHHHHHcCCc-chhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 56778888986 45688899999999999999999999999999999999999999999988774 358999999999
Q ss_pred HHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 316 ~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
++++..+||+++++++|++. +.|+.+++
T Consensus 204 ~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 231 (250)
T PRK11264 204 MSFARDVADRAIFMDQGRIV-EQGPAKAL 231 (250)
T ss_pred HHHHHHhcCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999874 45665443
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=324.73 Aligned_cols=196 Identities=30% Similarity=0.408 Sum_probs=174.0
Q ss_pred EEEEEeeeeeeCC-eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-------------
Q 006442 424 VVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~-~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------- 489 (645)
||+++||++.|++ +++|+|+||+|++||++-|+||||||||||||+|++..+|++|+|+++|.++.
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 5899999999974 56999999999999999999999999999999999999999999999998863
Q ss_pred cchhccchhhcCCCCCCHHHHHHhhhcc------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCC
Q 006442 490 PNYFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (645)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~v~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 563 (645)
.+.++ |+..+.++.||+||+++...- .-..++.+.|+.+|+. +..+..|.+|||||||||+||||++.+|+
T Consensus 81 IGvVF--QD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~-~k~~~lP~~LSGGEQQRvaIARAiV~~P~ 157 (223)
T COG2884 81 IGVVF--QDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLK-HKARALPSQLSGGEQQRVAIARAIVNQPA 157 (223)
T ss_pred eeeEe--eeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccc-hhhhcCccccCchHHHHHHHHHHHccCCC
Confidence 23334 345677899999999986431 1234688899999995 67889999999999999999999999999
Q ss_pred eEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeC
Q 006442 564 LLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYA 622 (645)
Q Consensus 564 lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~ 622 (645)
+||.||||.+|||+....+++++.++ +.||||.|||.+.+.++-.|++.+++|++..+.
T Consensus 158 vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 158 VLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred eEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 99999999999999999999998876 459999999999999999999999999998754
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-42 Score=347.45 Aligned_cols=208 Identities=24% Similarity=0.411 Sum_probs=175.5
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC------------ceEE
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------MKIA 164 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~------------~~i~ 164 (645)
+|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 3789999999988889999999999999999999999999999999999999999999988632 2599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
|++|++.+++..||.+|+...... .. ........+++.++++
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~--------------~~------------------------~~~~~~~~~~~~~~l~ 122 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLR--------------VR------------------------GASKEEAEKQARELLA 122 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHH--------------hc------------------------CCCHHHHHHHHHHHHH
Confidence 999999887888999998522100 00 0011122345667888
Q ss_pred hcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHh
Q 006442 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~ 321 (645)
.+|+. +..++.+.+||||||||++|||||+.+|++|||||||++||+.++.++.++|+ +.++|||++||+++++..
T Consensus 123 ~~gl~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 201 (240)
T PRK09493 123 KVGLA-ERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEK 201 (240)
T ss_pred HcCCh-HHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 88986 56788899999999999999999999999999999999999999999988874 358999999999999999
Q ss_pred hcCeEEEEcCceeEEeccChHHH
Q 006442 322 LCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 322 ~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
+||+++++++|++. +.|+..++
T Consensus 202 ~~d~i~~l~~G~i~-~~g~~~~~ 223 (240)
T PRK09493 202 VASRLIFIDKGRIA-EDGDPQVL 223 (240)
T ss_pred hCCEEEEEECCEEE-eeCCHHHH
Confidence 99999999999984 55665543
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=358.15 Aligned_cols=207 Identities=22% Similarity=0.325 Sum_probs=173.3
Q ss_pred EEEEeEEEEeCC-----eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC------------
Q 006442 98 VKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (645)
Q Consensus 98 i~i~nls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~------------ 160 (645)
|+++|++|+|++ .++|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 899999999974 469999999999999999999999999999999999999999999998742
Q ss_pred --ceEEEEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHH
Q 006442 161 --MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (645)
Q Consensus 161 --~~i~~v~Q~~~-~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (645)
..|+||+|++. .++..||.||+...... ...+.....+
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~---------------------------------------~~~~~~~~~~ 123 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMN---------------------------------------FGVSEEDAKQ 123 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHH---------------------------------------cCCCHHHHHH
Confidence 25999999973 23457999998522100 0011122334
Q ss_pred HHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEe
Q 006442 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIIS 313 (645)
Q Consensus 238 ~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivs 313 (645)
++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .|.|||++|
T Consensus 124 ~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiit 203 (290)
T PRK13634 124 KAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVT 203 (290)
T ss_pred HHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 5677888999965567899999999999999999999999999999999999999999999887742 489999999
Q ss_pred cCHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
||++++..+||+|++|++|++ .+.|+..+.
T Consensus 204 Hd~~~~~~~~drv~~l~~G~i-~~~g~~~~~ 233 (290)
T PRK13634 204 HSMEDAARYADQIVVMHKGTV-FLQGTPREI 233 (290)
T ss_pred CCHHHHHHhCCEEEEEECCEE-EEECCHHHH
Confidence 999999999999999999998 456765544
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-42 Score=346.94 Aligned_cols=201 Identities=30% Similarity=0.433 Sum_probs=173.2
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-------------cc
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------PN 491 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------------~~ 491 (645)
|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 80 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMG 80 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceE
Confidence 47899999998888999999999999999999999999999999999999999999999997652 12
Q ss_pred hhccchhhcCCCCCCHHHHHHhhhcc---cc----HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCe
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAAED---WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~~~---~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 564 (645)
|++|+ ..+.+..|+.+|+...... .. ...+..+++.+++. +..++++.+|||||||||+|||||+.+|++
T Consensus 81 ~v~q~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~ia~al~~~p~l 157 (235)
T cd03261 81 MLFQS--GALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLR-GAEDLYPAELSGGMKKRVALARALALDPEL 157 (235)
T ss_pred EEccC--cccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 44443 3455678999999764221 11 23467889999995 567899999999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 565 LVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 565 LlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
|||||||++||+.++..+.+.|++. +.|||+||||++++..+|||+++|++|++.. .|+.+++.
T Consensus 158 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 225 (235)
T cd03261 158 LLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVA-EGTPEELR 225 (235)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEE-ecCHHHHc
Confidence 9999999999999999999999864 5699999999999999999999999999974 57766654
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=358.68 Aligned_cols=208 Identities=22% Similarity=0.345 Sum_probs=173.5
Q ss_pred cEEEEeEEEEeCCe-----eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----------
Q 006442 97 GVKLENISKSYKGV-----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (645)
Q Consensus 97 ~i~i~nls~~y~~~-----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------- 160 (645)
.|+++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++.+
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 38999999999753 59999999999999999999999999999999999999999999986421
Q ss_pred -----------------------ceEEEEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhH
Q 006442 161 -----------------------MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216 (645)
Q Consensus 161 -----------------------~~i~~v~Q~~~-~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (645)
..|||++|+|. .++..||+||+......
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~---------------------------- 133 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVS---------------------------- 133 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHH----------------------------
Confidence 24899999873 23457999998522100
Q ss_pred HHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 006442 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIE 296 (645)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~ 296 (645)
...+.....+++.++++.+|+..+..++++.+|||||||||+|||||+.+|++|||||||++||+.++.
T Consensus 134 -----------~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~ 202 (305)
T PRK13651 134 -----------MGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVK 202 (305)
T ss_pred -----------cCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Confidence 011222344567788899999656789999999999999999999999999999999999999999999
Q ss_pred HHHHHHc---cCCCeEEEEecCHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 297 WLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 297 ~l~~~L~---~~g~tvIivsHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
.+.++|+ +.|.|||+||||++++.++||+|++|++|++ .+.|...+.
T Consensus 203 ~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i-~~~g~~~~~ 252 (305)
T PRK13651 203 EILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKI-IKDGDTYDI 252 (305)
T ss_pred HHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEE-EEECCHHHH
Confidence 9988774 4589999999999999999999999999997 455665443
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-42 Score=341.33 Aligned_cols=194 Identities=32% Similarity=0.476 Sum_probs=168.3
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc--------eEEEEecc
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQE 169 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~--------~i~~v~Q~ 169 (645)
|+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|... .++|++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEA 80 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCC
Confidence 4789999999888899999999999999999999999999999999999999999999987542 59999999
Q ss_pred CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCC
Q 006442 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (645)
Q Consensus 170 ~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (645)
+.+++..|+.||+...... . .. -+.++.++++.+|+.
T Consensus 81 ~~~~~~~tv~e~l~~~~~~---------------~------------------------~~----~~~~~~~~l~~~~l~ 117 (208)
T cd03268 81 PGFYPNLTARENLRLLARL---------------L------------------------GI----RKKRIDEVLDVVGLK 117 (208)
T ss_pred CccCccCcHHHHHHHHHHh---------------c------------------------CC----cHHHHHHHHHHcCCH
Confidence 9887889999998532100 0 00 023455667778885
Q ss_pred cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcCeE
Q 006442 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKI 326 (645)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~~d~i 326 (645)
+..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .++|||++|||++++..+||++
T Consensus 118 -~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v 196 (208)
T cd03268 118 -DSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRI 196 (208)
T ss_pred -HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEE
Confidence 567888999999999999999999999999999999999999999999888753 5899999999999999999999
Q ss_pred EEEcCceeE
Q 006442 327 VETEMGVSR 335 (645)
Q Consensus 327 ~~l~~G~~~ 335 (645)
+++++|++.
T Consensus 197 ~~l~~g~i~ 205 (208)
T cd03268 197 GIINKGKLI 205 (208)
T ss_pred EEEECCEEE
Confidence 999999863
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=342.53 Aligned_cols=197 Identities=29% Similarity=0.494 Sum_probs=167.9
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC------------ceEEE
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------MKIAF 165 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~------------~~i~~ 165 (645)
|+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGM 80 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceE
Confidence 478999999988889999999999999999999999999999999999999999999998642 24999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchh
Q 006442 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (645)
Q Consensus 166 v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (645)
++|++.+++..|+.||+...... .. ........+++.++++.
T Consensus 81 ~~q~~~~~~~~t~~e~l~~~~~~--------------~~------------------------~~~~~~~~~~~~~~l~~ 122 (213)
T cd03262 81 VFQQFNLFPHLTVLENITLAPIK--------------VK------------------------GMSKAEAEERALELLEK 122 (213)
T ss_pred EecccccCCCCcHHHHHHhHHHH--------------hc------------------------CCCHHHHHHHHHHHHHH
Confidence 99999887788999998532100 00 00111223445667788
Q ss_pred cCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhh
Q 006442 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQL 322 (645)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~ 322 (645)
+|+. +..++++.+||||||||++|||||+.+|++|||||||+|||+.+++++.++|+ +.|.|||++||+++++.++
T Consensus 123 ~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~ 201 (213)
T cd03262 123 VGLA-DKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREV 201 (213)
T ss_pred cCCH-hHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 8886 46788899999999999999999999999999999999999999999998875 3588999999999999999
Q ss_pred cCeEEEEcCce
Q 006442 323 CTKIVETEMGV 333 (645)
Q Consensus 323 ~d~i~~l~~G~ 333 (645)
||+++++++|+
T Consensus 202 ~d~i~~l~~g~ 212 (213)
T cd03262 202 ADRVIFMDDGR 212 (213)
T ss_pred CCEEEEEeCCc
Confidence 99999999885
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=344.13 Aligned_cols=192 Identities=27% Similarity=0.425 Sum_probs=167.0
Q ss_pred EEEEEeeeeeeCC--eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc------------
Q 006442 424 VVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------ 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~--~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------ 489 (645)
+|+++|+++.|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 4789999999964 46999999999999999999999999999999999999999999999998652
Q ss_pred -cchhccchhhcCCCCCCHHHHHHhhhcc------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCC
Q 006442 490 -PNYFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS 562 (645)
Q Consensus 490 -~~~~~q~~~~~l~~~~tv~e~v~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p 562 (645)
.+|++|+ ..+.+..|+.+|+...... ....++.++++.+++. +..++++.+|||||||||+|||||+.+|
T Consensus 81 ~i~~~~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p 157 (216)
T TIGR00960 81 HIGMVFQD--HRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLE-GKAHALPMQLSGGEQQRVAIARAIVHKP 157 (216)
T ss_pred hceEEecC--ccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 1344443 3455678999999764211 1234578899999994 6678999999999999999999999999
Q ss_pred CeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeE
Q 006442 563 TLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNL 618 (645)
Q Consensus 563 ~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i 618 (645)
++|||||||++||+.+++.+.+.|.++ +.|||+||||++++..+||++++|++|++
T Consensus 158 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 158 PLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999875 46999999999999999999999999874
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=347.10 Aligned_cols=205 Identities=32% Similarity=0.526 Sum_probs=173.0
Q ss_pred cEEEEeEEEEeCCe----eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC------------
Q 006442 97 GVKLENISKSYKGV----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (645)
Q Consensus 97 ~i~i~nls~~y~~~----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~------------ 160 (645)
+|+++|++++|+++ ++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 37899999999876 89999999999999999999999999999999999999999999987642
Q ss_pred -ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHH
Q 006442 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (645)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (645)
..++|++|++.+++..|+.||+...+.. . ..........+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~---------------~------------------------~~~~~~~~~~~ 121 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEI---------------A------------------------GVPKAEIEERV 121 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHH---------------c------------------------CCCHHHHHHHH
Confidence 2599999999887788999998532110 0 00111123345
Q ss_pred HhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 006442 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (645)
Q Consensus 240 ~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd 315 (645)
.++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++ .|+|||++||+
T Consensus 122 ~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~ 200 (233)
T cd03258 122 LELLELVGLE-DKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHE 200 (233)
T ss_pred HHHHHHCCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 6778888886 567888999999999999999999999999999999999999999999888743 38999999999
Q ss_pred HHHHHhhcCeEEEEcCceeEEeccChH
Q 006442 316 RAFLDQLCTKIVETEMGVSRTYEGNYS 342 (645)
Q Consensus 316 ~~~l~~~~d~i~~l~~G~~~~~~g~~~ 342 (645)
++++..+||+++++++|++. ..|+..
T Consensus 201 ~~~~~~~~d~i~~l~~G~i~-~~~~~~ 226 (233)
T cd03258 201 MEVVKRICDRVAVMEKGEVV-EEGTVE 226 (233)
T ss_pred HHHHHHhCCEEEEEECCEEE-EecCHH
Confidence 99999999999999999984 445543
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=342.96 Aligned_cols=195 Identities=32% Similarity=0.477 Sum_probs=164.1
Q ss_pred EEEeEEEEeCC--eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceEEEE
Q 006442 99 KLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (645)
Q Consensus 99 ~i~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i~~v 166 (645)
+++|++++|++ +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.. ..|+|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 36899999987 789999999999999999999999999999999999999999999998642 259999
Q ss_pred eccCcc-CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchh
Q 006442 167 SQEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (645)
Q Consensus 167 ~Q~~~~-~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (645)
+|++.. ++..|+.+|+...... . .........++.++++.
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~ 121 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLEN---------------L------------------------GLPEEEIEERVEEALEL 121 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHHHH
Confidence 999743 5678999998532100 0 00111123345677888
Q ss_pred cCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhh
Q 006442 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (645)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~ 322 (645)
+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++++.++|++ .|.|||++|||++++..+
T Consensus 122 ~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~ 200 (211)
T cd03225 122 VGLE-GLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLEL 200 (211)
T ss_pred cCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 8886 567888999999999999999999999999999999999999999999988743 478999999999999999
Q ss_pred cCeEEEEcCce
Q 006442 323 CTKIVETEMGV 333 (645)
Q Consensus 323 ~d~i~~l~~G~ 333 (645)
||+|+++++|+
T Consensus 201 ~d~i~~l~~G~ 211 (211)
T cd03225 201 ADRVIVLEDGK 211 (211)
T ss_pred CCEEEEEeCCC
Confidence 99999998874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-43 Score=331.82 Aligned_cols=205 Identities=27% Similarity=0.414 Sum_probs=171.6
Q ss_pred CcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCe-----eEEEECceecc-------
Q 006442 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG-----GEVLLGEHNVL------- 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~-----G~i~~~g~~~~------- 489 (645)
.+.++++|+++.|+++.+|++||+.|++++++||+||+|||||||||++.++.+... |+|.++|.++.
T Consensus 5 ~~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 5 IPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred cceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 356899999999999999999999999999999999999999999999999988765 99999999873
Q ss_pred -----cchhccchhhcCCCCCCHHHHHHhhhcccc------HHHHHHHHhhcCCC---hhhhccCcCcCCHhHHHHHHHH
Q 006442 490 -----PNYFEQNQAEALDLDKTVLETVAEAAEDWR------IDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAFC 555 (645)
Q Consensus 490 -----~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~------~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqkqrv~lA 555 (645)
.+.++|.+ +- +.+|++|||.++..... .+.+...|....+= .+.+++.+..||||||||+|||
T Consensus 85 ~lRr~vGMVFQkP--nP-Fp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIA 161 (253)
T COG1117 85 ELRRRVGMVFQKP--NP-FPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIA 161 (253)
T ss_pred HHHHHheeeccCC--CC-CCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHH
Confidence 23455543 33 45999999998754211 12244455544431 3456788889999999999999
Q ss_pred HHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcCc--eEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~~--tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|||+.+|+|||||||||+|||-+...+.++|.+++. |||+|||.+.-+.+++|+..++..|+++++ |+-+.++.
T Consensus 162 RalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~-g~T~~iF~ 237 (253)
T COG1117 162 RALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEF-GPTDKIFT 237 (253)
T ss_pred HHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEE-cCHHhhhc
Confidence 999999999999999999999999999999998854 999999999999999999999999999987 55555543
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-42 Score=355.87 Aligned_cols=209 Identities=22% Similarity=0.296 Sum_probs=174.4
Q ss_pred cEEEEeEEEEeCC-----eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----------
Q 006442 97 GVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (645)
Q Consensus 97 ~i~i~nls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------- 160 (645)
+|+++|++|+|+. ..+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|..
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 4899999999963 259999999999999999999999999999999999999999999998743
Q ss_pred ---ceEEEEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHH
Q 006442 161 ---MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (645)
Q Consensus 161 ---~~i~~v~Q~~~-~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (645)
..|+|++|+|. .++..||.+|+...... ..++..+.+
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~---------------------------------------~~~~~~~~~ 121 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQN---------------------------------------FGIPKEKAE 121 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHH---------------------------------------cCCCHHHHH
Confidence 14899999872 23456999998532100 001122334
Q ss_pred HHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEe
Q 006442 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIIS 313 (645)
Q Consensus 237 ~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivs 313 (645)
.++.++++.+|+.....++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|+ +.|.|||++|
T Consensus 122 ~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vt 201 (288)
T PRK13643 122 KIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVT 201 (288)
T ss_pred HHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 5667888888986456789999999999999999999999999999999999999999999988774 3589999999
Q ss_pred cCHHHHHhhcCeEEEEcCceeEEeccChHHHH
Q 006442 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
||++++..+||+|++|++|++ .+.|..++++
T Consensus 202 Hd~~~~~~~~dri~~l~~G~i-~~~g~~~~~~ 232 (288)
T PRK13643 202 HLMDDVADYADYVYLLEKGHI-ISCGTPSDVF 232 (288)
T ss_pred cCHHHHHHhCCEEEEEECCEE-EEECCHHHHH
Confidence 999999999999999999998 4667766553
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=354.96 Aligned_cols=208 Identities=24% Similarity=0.418 Sum_probs=173.9
Q ss_pred cEEEEeEEEEeCC-----eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----------
Q 006442 97 GVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (645)
Q Consensus 97 ~i~i~nls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------- 160 (645)
.|+++|++|+|++ +++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 3899999999974 369999999999999999999999999999999999999999999987632
Q ss_pred -ceEEEEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHH
Q 006442 161 -MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (645)
Q Consensus 161 -~~i~~v~Q~~~-~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (645)
..|||++|++. .++..||+||+...... ..++..+..++
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~~~ 122 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPIN---------------------------------------LGLSEEEIENR 122 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHH---------------------------------------CCCCHHHHHHH
Confidence 25999999974 23467999998521100 00122233456
Q ss_pred HHhhchhcCCCc-ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEe
Q 006442 239 VSKLMPELGFTA-DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIIS 313 (645)
Q Consensus 239 i~~ll~~lgl~~-~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivs 313 (645)
+.++++.+|+.. +..++++.+||||||||++|||||+.+|++|||||||+|||+.++.++.++|++ .|.|||++|
T Consensus 123 ~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vt 202 (287)
T PRK13637 123 VKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVS 202 (287)
T ss_pred HHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 778888999962 467899999999999999999999999999999999999999999999888742 489999999
Q ss_pred cCHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
||++++..+||+|+++++|++. ..|+..++
T Consensus 203 Hd~~~~~~~~drv~~l~~G~i~-~~g~~~~~ 232 (287)
T PRK13637 203 HSMEDVAKLADRIIVMNKGKCE-LQGTPREV 232 (287)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 9999999999999999999984 55665554
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=362.74 Aligned_cols=202 Identities=26% Similarity=0.376 Sum_probs=175.1
Q ss_pred EEEEEeeeeeeCC----eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------
Q 006442 424 VVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~----~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (645)
||+++|++++|++ +.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 4899999999952 47999999999999999999999999999999999999999999999998762
Q ss_pred ---cchhccchhhcCCCCCCHHHHHHhhhcc--cc----HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHcc
Q 006442 490 ---PNYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560 (645)
Q Consensus 490 ---~~~~~q~~~~~l~~~~tv~e~v~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~ 560 (645)
.+|++|+ ..+.+..|+.+|+.+.... +. .+++.++|+.+|+. +..++++.+|||||||||+|||||+.
T Consensus 81 r~~Ig~v~Q~--~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~-~~~~~~~~~LSgGqkQRV~IARAL~~ 157 (343)
T TIGR02314 81 RRQIGMIFQH--FNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLG-DKHDSYPSNLSGGQKQRVAIARALAS 157 (343)
T ss_pred hcCEEEEECC--ccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHh
Confidence 2344544 3566778999999875421 11 23577899999994 67899999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 561 ~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
+|++|||||||++||+.++..+.+.|++. +.|||+||||++.+.++||||++|++|++++ .|+.++++
T Consensus 158 ~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~-~g~~~~v~ 229 (343)
T TIGR02314 158 NPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE-QGTVSEIF 229 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 99999999999999999999999988764 5699999999999999999999999999985 46665554
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-42 Score=341.96 Aligned_cols=193 Identities=33% Similarity=0.489 Sum_probs=169.0
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cchhccc
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQN 496 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~q~ 496 (645)
|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|+
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 80 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQD 80 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCc
Confidence 47899999998888999999999999999999999999999999999999999999999998752 2355554
Q ss_pred hhhcCCCCCCHHHHHHhhhcc------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCC
Q 006442 497 QAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (645)
Q Consensus 497 ~~~~l~~~~tv~e~v~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP 570 (645)
. .+.+..|+.+|+...... ...+.+.++++.+++. +..++++.+|||||||||+|||||+.+|++||||||
T Consensus 81 ~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEP 157 (213)
T cd03259 81 Y--ALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLE-GLLNRYPHELSGGQQQRVALARALAREPSLLLLDEP 157 (213)
T ss_pred h--hhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3 455678999999764321 1123577889999995 667899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEe
Q 006442 571 TNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (645)
Q Consensus 571 t~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~ 620 (645)
|++||+.++..+.+.|.++ +.|||++|||++++.++||++++|++|++..
T Consensus 158 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 211 (213)
T cd03259 158 LSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQ 211 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 9999999999999999864 4699999999999999999999999999874
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-42 Score=347.40 Aligned_cols=205 Identities=28% Similarity=0.414 Sum_probs=173.0
Q ss_pred EEEEeEEEEeCC-eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceEEEE
Q 006442 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (645)
Q Consensus 98 i~i~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i~~v 166 (645)
|+++|++++|++ .++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 478999999987 789999999999999999999999999999999999999999999998642 259999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhc
Q 006442 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (645)
Q Consensus 167 ~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (645)
+|++.+++..|+.||+..... +. ..+.....+.+.++++.+
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~l 121 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPK---------------LL------------------------KWPKEKIRERADELLALV 121 (242)
T ss_pred ccCccccCCCcHHHHHHHHHH---------------Hc------------------------CCCHHHHHHHHHHHHHHc
Confidence 999988778999999852100 00 001112234566788888
Q ss_pred CCCc-ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHh
Q 006442 247 GFTA-DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 247 gl~~-~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~ 321 (645)
|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.+.|++ .|+|||++||+++++..
T Consensus 122 ~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~ 201 (242)
T cd03295 122 GLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFR 201 (242)
T ss_pred CCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHH
Confidence 9864 367888999999999999999999999999999999999999999999888753 38999999999999999
Q ss_pred hcCeEEEEcCceeEEeccChH
Q 006442 322 LCTKIVETEMGVSRTYEGNYS 342 (645)
Q Consensus 322 ~~d~i~~l~~G~~~~~~g~~~ 342 (645)
+||+|+++++|++. ..|...
T Consensus 202 ~~d~i~~l~~G~i~-~~~~~~ 221 (242)
T cd03295 202 LADRIAIMKNGEIV-QVGTPD 221 (242)
T ss_pred hCCEEEEEECCEEE-EecCHH
Confidence 99999999999984 445543
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=342.21 Aligned_cols=196 Identities=24% Similarity=0.442 Sum_probs=165.9
Q ss_pred EEEEeEEEEeCC----eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-------------
Q 006442 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------- 160 (645)
Q Consensus 98 i~i~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~------------- 160 (645)
|+++|++++|++ .++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 789999999964 469999999999999999999999999999999999999999999987632
Q ss_pred -ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHH
Q 006442 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (645)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (645)
..++|++|++.+++..|++||+..... .. ..+.....+++
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~---------------~~------------------------~~~~~~~~~~~ 122 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLL---------------IG------------------------KKSVKEAKERA 122 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHH---------------hc------------------------CCCHHHHHHHH
Confidence 359999999988778899999853210 00 00011123445
Q ss_pred HhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 006442 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (645)
Q Consensus 240 ~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd 315 (645)
.++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ .+.|||++|||
T Consensus 123 ~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~ 201 (221)
T TIGR02211 123 YEMLEKVGLE-HRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHD 201 (221)
T ss_pred HHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 6778888986 567888999999999999999999999999999999999999999999988752 48899999999
Q ss_pred HHHHHhhcCeEEEEcCcee
Q 006442 316 RAFLDQLCTKIVETEMGVS 334 (645)
Q Consensus 316 ~~~l~~~~d~i~~l~~G~~ 334 (645)
++++.. ||+++++++|++
T Consensus 202 ~~~~~~-~d~v~~l~~G~i 219 (221)
T TIGR02211 202 LELAKK-LDRVLEMKDGQL 219 (221)
T ss_pred HHHHhh-cCEEEEEeCCEe
Confidence 999965 799999999875
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-42 Score=368.04 Aligned_cols=211 Identities=30% Similarity=0.403 Sum_probs=178.0
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceEEEE
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i~~v 166 (645)
+|+++|++++|+++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.. .+|||+
T Consensus 3 ~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v 82 (402)
T PRK09536 3 MIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASV 82 (402)
T ss_pred eEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEE
Confidence 5999999999999999999999999999999999999999999999999999999999998742 259999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhc
Q 006442 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (645)
Q Consensus 167 ~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (645)
+|++.+++.+|++||+......... .+. .......+++.++++.+
T Consensus 83 ~q~~~l~~~~tv~e~v~~~~~~~~~----------~~~-------------------------~~~~~~~~~v~~~le~v 127 (402)
T PRK09536 83 PQDTSLSFEFDVRQVVEMGRTPHRS----------RFD-------------------------TWTETDRAAVERAMERT 127 (402)
T ss_pred ccCCCCCCCCCHHHHHHhccchhcc----------ccc-------------------------CCCHHHHHHHHHHHHHc
Confidence 9999888899999998632110000 000 00011234567888889
Q ss_pred CCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhc
Q 006442 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLC 323 (645)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~ 323 (645)
|+. +..++++.+|||||||||+|||||+++|++|||||||+|||+.++..+.++|+ +.++|||++|||++++.++|
T Consensus 128 gl~-~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~a 206 (402)
T PRK09536 128 GVA-QFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYC 206 (402)
T ss_pred CCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhC
Confidence 986 67899999999999999999999999999999999999999999998888764 35889999999999999999
Q ss_pred CeEEEEcCceeEEeccChHHH
Q 006442 324 TKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 324 d~i~~l~~G~~~~~~g~~~~~ 344 (645)
|+++++++|++. ..|+.+++
T Consensus 207 drii~l~~G~iv-~~G~~~ev 226 (402)
T PRK09536 207 DELVLLADGRVR-AAGPPADV 226 (402)
T ss_pred CEEEEEECCEEE-EecCHHHH
Confidence 999999999984 56765443
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=328.92 Aligned_cols=204 Identities=20% Similarity=0.325 Sum_probs=162.6
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCc-----cEEEEcCCCc--------
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS-----GNVIKAKSNM-------- 161 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~-----G~I~~~~~~~-------- 161 (645)
...++++|+++.|+.+.+|+|||+.|++++++||+||+|||||||||++..+.+... |+|.++|.+.
T Consensus 5 ~~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 5 IPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred cceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 346999999999999999999999999999999999999999999999999887654 9999987642
Q ss_pred ----eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHH
Q 006442 162 ----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (645)
Q Consensus 162 ----~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (645)
+||+|+|.|..++ +||+||+..+..-. .. .. ..+++
T Consensus 85 ~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~-g~-~~-------------------------------------~~lde 124 (253)
T COG1117 85 ELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLH-GI-KD-------------------------------------KELDE 124 (253)
T ss_pred HHHHHheeeccCCCCCC-chHHHHHHHhHHhh-cc-ch-------------------------------------HHHHH
Confidence 6999999998766 99999997543210 00 00 01111
Q ss_pred HHHhhchhcCCC---cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 006442 238 KVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (645)
Q Consensus 238 ~i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIiv 312 (645)
.++..|....+- .+.+++....||||||||++|||||+.+|+|||||||||+|||.+...+.+++.+ ..-|||+|
T Consensus 125 iVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviV 204 (253)
T COG1117 125 IVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIV 204 (253)
T ss_pred HHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEE
Confidence 111111111110 2345667889999999999999999999999999999999999998877776643 46899999
Q ss_pred ecCHHHHHhhcCeEEEEcCceeEEec
Q 006442 313 SHDRAFLDQLCTKIVETEMGVSRTYE 338 (645)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~G~~~~~~ 338 (645)
||.+.-+.+++|+.+++..|.+..|.
T Consensus 205 THnmqQAaRvSD~taFf~~G~LvE~g 230 (253)
T COG1117 205 THNMQQAARVSDYTAFFYLGELVEFG 230 (253)
T ss_pred eCCHHHHHHHhHhhhhhcccEEEEEc
Confidence 99999999999999999999987664
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=344.83 Aligned_cols=205 Identities=23% Similarity=0.376 Sum_probs=171.8
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC---------ceEEEEe
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLS 167 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~---------~~i~~v~ 167 (645)
+|+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~ 80 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVF 80 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeC
Confidence 3789999999998889999999999999999999999999999999999999999999988643 2599999
Q ss_pred ccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcC
Q 006442 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (645)
Q Consensus 168 Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg 247 (645)
|++.+++..|+.+|+...... . ..........+.++++.+|
T Consensus 81 q~~~~~~~~t~~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~g 121 (236)
T TIGR03864 81 QQPTLDLDLSVRQNLRYHAAL---------------H------------------------GLSRAEARERIAALLARLG 121 (236)
T ss_pred CCCCCcccCcHHHHHHHHHHh---------------c------------------------CCCHHHHHHHHHHHHHHcC
Confidence 998887889999998521100 0 0001112334567778888
Q ss_pred CCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhc
Q 006442 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLC 323 (645)
Q Consensus 248 l~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~ 323 (645)
+. ...++.+.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .|.|||++||+++++.. |
T Consensus 122 l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~ 199 (236)
T TIGR03864 122 LA-ERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-D 199 (236)
T ss_pred Ch-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-C
Confidence 86 567888999999999999999999999999999999999999999999887742 48999999999999975 9
Q ss_pred CeEEEEcCceeEEeccChHH
Q 006442 324 TKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 324 d~i~~l~~G~~~~~~g~~~~ 343 (645)
|+++++++|++. ..|+.+.
T Consensus 200 d~i~~l~~G~i~-~~~~~~~ 218 (236)
T TIGR03864 200 DRLVVLHRGRVL-ADGAAAE 218 (236)
T ss_pred CEEEEEeCCeEE-EeCCHHH
Confidence 999999999974 4565443
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=356.94 Aligned_cols=206 Identities=27% Similarity=0.419 Sum_probs=179.6
Q ss_pred CcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---------cch
Q 006442 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNY 492 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------~~~ 492 (645)
..+|+++|++++|+++.+|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 5 ~~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~ 84 (306)
T PRK13537 5 VAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84 (306)
T ss_pred CceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEE
Confidence 35799999999999888999999999999999999999999999999999999999999999998752 345
Q ss_pred hccchhhcCCCCCCHHHHHHhhhccc--c----HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEE
Q 006442 493 FEQNQAEALDLDKTVLETVAEAAEDW--R----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (645)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~v~~~~~~~--~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 566 (645)
++|. ..+++..|+.+|+.+....+ . ..++.++++.+++. +..++++..|||||||||+|||||+.+|++||
T Consensus 85 v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~aL~~~P~lll 161 (306)
T PRK13537 85 VPQF--DNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE-NKADAKVGELSGGMKRRLTLARALVNDPDVLV 161 (306)
T ss_pred Eecc--CcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hHhcCchhhCCHHHHHHHHHHHHHhCCCCEEE
Confidence 6654 35667889999997533211 1 23466889999995 66789999999999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHH
Q 006442 567 LDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSL 631 (645)
Q Consensus 567 LDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~ 631 (645)
|||||+|||+.++..+.++|+++ +.|||++||+++++.++||||++|++|+++. .|+.+++.+.
T Consensus 162 LDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~-~g~~~~l~~~ 228 (306)
T PRK13537 162 LDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIA-EGAPHALIES 228 (306)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHHhc
Confidence 99999999999999999999875 4699999999999999999999999999985 5777776543
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-42 Score=346.93 Aligned_cols=213 Identities=26% Similarity=0.428 Sum_probs=173.5
Q ss_pred EEEEeEEEEeCC-eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-------------ceE
Q 006442 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MKI 163 (645)
Q Consensus 98 i~i~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-------------~~i 163 (645)
|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 478999999987 789999999999999999999999999999999999999999999988642 249
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhc
Q 006442 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (645)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (645)
+|++|++.+++..||.+|+.......... .. .+. ........+++.+++
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~------~~-~~~------------------------~~~~~~~~~~~~~~l 129 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRST------WR-SLF------------------------GLFPKEEKQRALAAL 129 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchh------hh-hhc------------------------ccCcHHHHHHHHHHH
Confidence 99999998878889999985321100000 00 000 000011234566778
Q ss_pred hhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHH
Q 006442 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFL 319 (645)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l 319 (645)
+.+|+. +..++++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|++ .|+|||++|||++++
T Consensus 130 ~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~ 208 (241)
T cd03256 130 ERVGLL-DKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLA 208 (241)
T ss_pred HHcCCh-hhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 888885 567888999999999999999999999999999999999999999999887743 489999999999999
Q ss_pred HhhcCeEEEEcCceeEEeccChHH
Q 006442 320 DQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 320 ~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
..+||+++++++|++. +.|..++
T Consensus 209 ~~~~d~v~~l~~G~i~-~~~~~~~ 231 (241)
T cd03256 209 REYADRIVGLKDGRIV-FDGPPAE 231 (241)
T ss_pred HHhCCEEEEEECCEEE-eecCHHH
Confidence 9999999999999974 4566544
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-42 Score=347.76 Aligned_cols=214 Identities=27% Similarity=0.431 Sum_probs=174.5
Q ss_pred cEEEEeEEEEeC-CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-------------ce
Q 006442 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MK 162 (645)
Q Consensus 97 ~i~i~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-------------~~ 162 (645)
+|+++|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 378999999998 7789999999999999999999999999999999999999999999998642 24
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhh
Q 006442 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (645)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (645)
++|++|++.+++..||.+|+.......... .. .+ . ........+++.++
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~------~~-~~-------------~-----------~~~~~~~~~~~~~~ 129 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPT------WR-SL-------------L-----------GRFSEEDKERALSA 129 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccc------hh-hh-------------h-----------ccccHHHHHHHHHH
Confidence 999999998878889999985321100000 00 00 0 00001123456677
Q ss_pred chhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHH
Q 006442 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (645)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~ 318 (645)
++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .|+|||+|||++++
T Consensus 130 l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~ 208 (243)
T TIGR02315 130 LERVGLA-DKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDL 208 (243)
T ss_pred HHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 8888885 567888999999999999999999999999999999999999999999887743 37899999999999
Q ss_pred HHhhcCeEEEEcCceeEEeccChHH
Q 006442 319 LDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 319 l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
+.++||+++++++|++. ..|+.++
T Consensus 209 ~~~~~d~v~~l~~G~i~-~~~~~~~ 232 (243)
T TIGR02315 209 AKKYADRIVGLKAGEIV-FDGAPSE 232 (243)
T ss_pred HHHhcCeEEEEECCEEE-ecCCHHH
Confidence 99999999999999974 5566544
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=345.61 Aligned_cols=207 Identities=26% Similarity=0.402 Sum_probs=175.1
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------------
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------------- 160 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~---------------- 160 (645)
+|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|..
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 4899999999998889999999999999999999999999999999999999999999997642
Q ss_pred ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHH
Q 006442 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (645)
Q Consensus 161 ~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 240 (645)
..|+|++|++.+++..|+.||+....... . .........++.
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~~--------------~------------------------~~~~~~~~~~~~ 123 (242)
T PRK11124 82 RNVGMVFQQYNLWPHLTVQQNLIEAPCRV--------------L------------------------GLSKDQALARAE 123 (242)
T ss_pred hheEEEecCccccCCCcHHHHHHHHHHHH--------------c------------------------CCCHHHHHHHHH
Confidence 25999999998878889999985211000 0 000111234556
Q ss_pred hhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHH
Q 006442 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRA 317 (645)
Q Consensus 241 ~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~ 317 (645)
++++.+|+. ...++.+.+||||||||++|||||+.+|++|||||||++||+.++.++.++|+ +.++|||++|||.+
T Consensus 124 ~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 202 (242)
T PRK11124 124 KLLERLRLK-PYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE 202 (242)
T ss_pred HHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 778888986 56788899999999999999999999999999999999999999999998875 35899999999999
Q ss_pred HHHhhcCeEEEEcCceeEEeccChHH
Q 006442 318 FLDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 318 ~l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
++..+||+++++++|++. +.|++..
T Consensus 203 ~~~~~~d~i~~l~~g~i~-~~~~~~~ 227 (242)
T PRK11124 203 VARKTASRVVYMENGHIV-EQGDASC 227 (242)
T ss_pred HHHHhcCEEEEEECCEEE-EeCCHHH
Confidence 999999999999999984 5566554
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=354.12 Aligned_cols=208 Identities=22% Similarity=0.319 Sum_probs=173.1
Q ss_pred cEEEEeEEEEeCC-----eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----------
Q 006442 97 GVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (645)
Q Consensus 97 ~i~i~nls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------- 160 (645)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4899999999974 469999999999999999999999999999999999999999999998742
Q ss_pred ---ceEEEEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHH
Q 006442 161 ---MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (645)
Q Consensus 161 ---~~i~~v~Q~~~-~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (645)
..|+|++|++. .++..|+.||+...... .........
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~ 122 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKN---------------------------------------FGFSEDEAK 122 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHH---------------------------------------cCCCHHHHH
Confidence 25999999973 23457999998522100 001112233
Q ss_pred HHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEe
Q 006442 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIIS 313 (645)
Q Consensus 237 ~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivs 313 (645)
+++.++++.+|+.....++++.+||||||||++|||||+.+|++|||||||+|||+.++.++.++|+ +.|.|||++|
T Consensus 123 ~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivs 202 (287)
T PRK13641 123 EKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVT 202 (287)
T ss_pred HHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 4567788889986457789999999999999999999999999999999999999999999988775 3589999999
Q ss_pred cCHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
||++++..+||+++++++|++. ..|...++
T Consensus 203 H~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 232 (287)
T PRK13641 203 HNMDDVAEYADDVLVLEHGKLI-KHASPKEI 232 (287)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999973 55665443
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=343.92 Aligned_cols=199 Identities=24% Similarity=0.453 Sum_probs=168.2
Q ss_pred ccEEEEeEEEEeCC----eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----------
Q 006442 96 SGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (645)
Q Consensus 96 ~~i~i~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------- 160 (645)
++|+++|++|+|++ .++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 35999999999974 569999999999999999999999999999999999999999999998632
Q ss_pred ---ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHH
Q 006442 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (645)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (645)
..|+|++|++.+++..|++||+..... +. .......++
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~ 124 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLL---------------IG------------------------KKKPAEINS 124 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHH---------------hc------------------------CCCHHHHHH
Confidence 359999999988778899999853210 00 001112234
Q ss_pred HHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEe
Q 006442 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIIS 313 (645)
Q Consensus 238 ~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivs 313 (645)
++.++++.+|+. +..++.+.+||||||||++|||||+.+|++|||||||+|||+.+++++.++|++ .|+|||++|
T Consensus 125 ~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~s 203 (233)
T PRK11629 125 RALEMLAAVGLE-HRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVT 203 (233)
T ss_pred HHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 566778888986 566888999999999999999999999999999999999999999999888743 489999999
Q ss_pred cCHHHHHhhcCeEEEEcCceeE
Q 006442 314 HDRAFLDQLCTKIVETEMGVSR 335 (645)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~ 335 (645)
||++++..+ ++++++++|++.
T Consensus 204 H~~~~~~~~-~~~~~l~~G~i~ 224 (233)
T PRK11629 204 HDLQLAKRM-SRQLEMRDGRLT 224 (233)
T ss_pred CCHHHHHhh-CEEEEEECCEEE
Confidence 999999875 699999999873
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-42 Score=358.31 Aligned_cols=198 Identities=29% Similarity=0.457 Sum_probs=168.4
Q ss_pred EEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC---------ceEEEEeccCccCCC
Q 006442 105 KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQEFEVSMS 175 (645)
Q Consensus 105 ~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~---------~~i~~v~Q~~~~~~~ 175 (645)
|+|+++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+ ..+||++|++.+++.
T Consensus 1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80 (302)
T ss_pred CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence 46888889999999999999999999999999999999999999999999998743 259999999988888
Q ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccc
Q 006442 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (645)
Q Consensus 176 ~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~ 255 (645)
+||+||+..... +. ........+++.++++.+|+. +..++
T Consensus 81 ~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~~~l~-~~~~~ 120 (302)
T TIGR01188 81 LTGRENLEMMGR---------------LY------------------------GLPKDEAEERAEELLELFELG-EAADR 120 (302)
T ss_pred CcHHHHHHHHHH---------------Hc------------------------CCCHHHHHHHHHHHHHHcCCh-hHhCC
Confidence 999999852100 00 011112344567888999996 56789
Q ss_pred cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCeEEEEcCc
Q 006442 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETEMG 332 (645)
Q Consensus 256 ~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d~i~~l~~G 332 (645)
++.+|||||||||+|||||+.+|++|||||||+|||+.+++++.++|+ +.|+|||++||+++++.++||+|+++++|
T Consensus 121 ~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G 200 (302)
T TIGR01188 121 PVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHG 200 (302)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999998774 35899999999999999999999999999
Q ss_pred eeEEeccChHH
Q 006442 333 VSRTYEGNYSQ 343 (645)
Q Consensus 333 ~~~~~~g~~~~ 343 (645)
++. +.|+..+
T Consensus 201 ~i~-~~g~~~~ 210 (302)
T TIGR01188 201 RII-AEGTPEE 210 (302)
T ss_pred EEE-EECCHHH
Confidence 984 5566443
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=352.26 Aligned_cols=205 Identities=26% Similarity=0.385 Sum_probs=172.9
Q ss_pred cEEEEeEEEEeC-CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceEEE
Q 006442 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (645)
Q Consensus 97 ~i~i~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i~~ 165 (645)
.|+++|++|+|+ +.++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..|+|
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 699999999996 4679999999999999999999999999999999999999999999998742 25999
Q ss_pred EeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 166 LSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 166 v~Q~~~-~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
++|++. .++..||.+|+...... ..++....++++.++++
T Consensus 84 v~q~~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~ 124 (274)
T PRK13647 84 VFQDPDDQVFSSTVWDDVAFGPVN---------------------------------------MGLDKDEVERRVEEALK 124 (274)
T ss_pred EecChhhhhccCcHHHHHHhhHHH---------------------------------------cCCCHHHHHHHHHHHHH
Confidence 999973 34567999998521100 00111123345667888
Q ss_pred hcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHh
Q 006442 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~ 321 (645)
.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|+ +.|+|||++|||++++.+
T Consensus 125 ~~~L~-~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~ 203 (274)
T PRK13647 125 AVRMW-DFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAE 203 (274)
T ss_pred HCCCH-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 88986 67889999999999999999999999999999999999999999999988874 348999999999999999
Q ss_pred hcCeEEEEcCceeEEeccChH
Q 006442 322 LCTKIVETEMGVSRTYEGNYS 342 (645)
Q Consensus 322 ~~d~i~~l~~G~~~~~~g~~~ 342 (645)
+||+|+++++|++. +.|+.+
T Consensus 204 ~~d~i~~l~~G~i~-~~g~~~ 223 (274)
T PRK13647 204 WADQVIVLKEGRVL-AEGDKS 223 (274)
T ss_pred hCCEEEEEECCEEE-EECCHH
Confidence 99999999999984 456543
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=342.22 Aligned_cols=199 Identities=27% Similarity=0.406 Sum_probs=168.4
Q ss_pred ccEEEEeEEEEeCC----eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----------
Q 006442 96 SGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (645)
Q Consensus 96 ~~i~i~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------- 160 (645)
++|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|..
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 46999999999975 359999999999999999999999999999999999999999999987632
Q ss_pred ---ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHH
Q 006442 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (645)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (645)
..++|++|++.+++..|+.||+..... .. ..+.....+
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~---------------~~------------------------~~~~~~~~~ 125 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPAL---------------LR------------------------GESSRQSRN 125 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHH---------------hc------------------------CCCHHHHHH
Confidence 259999999988778899999853210 00 001112234
Q ss_pred HHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEe
Q 006442 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIIS 313 (645)
Q Consensus 238 ~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivs 313 (645)
++.++++.+|+. +..++.+.+||||||||++|||||+.+|++|||||||+|||+.+++++.++|+ +.|.|||++|
T Consensus 126 ~~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~s 204 (228)
T PRK10584 126 GAKALLEQLGLG-KRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVT 204 (228)
T ss_pred HHHHHHHHcCCH-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 566788888986 56788899999999999999999999999999999999999999999998874 3488999999
Q ss_pred cCHHHHHhhcCeEEEEcCceeE
Q 006442 314 HDRAFLDQLCTKIVETEMGVSR 335 (645)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~ 335 (645)
||++++.. ||+++++++|++.
T Consensus 205 H~~~~~~~-~d~i~~l~~g~i~ 225 (228)
T PRK10584 205 HDLQLAAR-CDRRLRLVNGQLQ 225 (228)
T ss_pred cCHHHHHh-CCEEEEEECCEEE
Confidence 99999865 9999999999863
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-42 Score=342.07 Aligned_cols=200 Identities=31% Similarity=0.481 Sum_probs=165.7
Q ss_pred EEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----ceEEEEeccCccC
Q 006442 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEFEVS 173 (645)
Q Consensus 99 ~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-----~~i~~v~Q~~~~~ 173 (645)
+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++|++.+.
T Consensus 1 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~ 80 (213)
T cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSID 80 (213)
T ss_pred CcccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccc
Confidence 36899999988889999999999999999999999999999999999999999999998753 3699999998653
Q ss_pred --CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcc
Q 006442 174 --MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (645)
Q Consensus 174 --~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~ 251 (645)
+..|+.||+......... .. ........+++.++++.+|+. +
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~----------~~-------------------------~~~~~~~~~~~~~~l~~~~l~-~ 124 (213)
T cd03235 81 RDFPISVRDVVLMGLYGHKG----------LF-------------------------RRLSKADKAKVDEALERVGLS-E 124 (213)
T ss_pred cCCCCcHHHHHHhccccccc----------cc-------------------------cCCCHHHHHHHHHHHHHcCCH-H
Confidence 347999998532110000 00 000011234566778888886 5
Q ss_pred cccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcCeEEE
Q 006442 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVE 328 (645)
Q Consensus 252 ~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~~d~i~~ 328 (645)
..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++ .+.|||++|||++++.++||++++
T Consensus 125 ~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~ 204 (213)
T cd03235 125 LADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLL 204 (213)
T ss_pred HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 67888999999999999999999999999999999999999999999887743 578999999999999999999999
Q ss_pred EcCcee
Q 006442 329 TEMGVS 334 (645)
Q Consensus 329 l~~G~~ 334 (645)
+++|.+
T Consensus 205 l~~~~~ 210 (213)
T cd03235 205 LNRTVV 210 (213)
T ss_pred EcCcEe
Confidence 988743
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=362.61 Aligned_cols=202 Identities=28% Similarity=0.429 Sum_probs=177.9
Q ss_pred EEEEEeeeeee-CCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cchhc
Q 006442 424 VVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFE 494 (645)
Q Consensus 424 ~i~~~~v~~~y-~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~ 494 (645)
+|+++|++++| +++.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++. .+|++
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 58999999999 7788999999999999999999999999999999999999999999999998762 34566
Q ss_pred cchhhcCCCCCCHHHHHHhhhcc--cc----HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEee
Q 006442 495 QNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568 (645)
Q Consensus 495 q~~~~~l~~~~tv~e~v~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 568 (645)
|+ ..+++.+||.+|+.+.... .. ..++.++++.+++. +..++++.+|||||||||+|||||+.+|++||||
T Consensus 83 Q~--~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLD 159 (356)
T PRK11650 83 QN--YALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELE-PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFD 159 (356)
T ss_pred CC--ccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 54 4677889999999876431 11 24577899999994 7889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 569 EPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 569 EPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
|||++||+.+++.+.+.|++. +.|+|+||||++++..+||++++|++|++.. .|..+++.
T Consensus 160 EP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~-~g~~~~~~ 223 (356)
T PRK11650 160 EPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQ-IGTPVEVY 223 (356)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE-ECCHHHHH
Confidence 999999999999999888753 5699999999999999999999999999985 46666654
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=358.07 Aligned_cols=212 Identities=21% Similarity=0.377 Sum_probs=176.6
Q ss_pred CccEEEEeEEEEeCC-------------eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-
Q 006442 95 SSGVKLENISKSYKG-------------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN- 160 (645)
Q Consensus 95 ~~~i~i~nls~~y~~-------------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~- 160 (645)
.++|+++|++++|+. .++++||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 457999999999962 469999999999999999999999999999999999999999999998642
Q ss_pred ------------ceEEEEeccC--ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHH
Q 006442 161 ------------MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRK 226 (645)
Q Consensus 161 ------------~~i~~v~Q~~--~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (645)
..|+|++|++ .+++.+||.+|+....... .
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~--------------~---------------------- 129 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTY--------------H---------------------- 129 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHh--------------c----------------------
Confidence 2599999998 4666789999985321100 0
Q ss_pred HHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--
Q 006442 227 AQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK-- 304 (645)
Q Consensus 227 ~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~-- 304 (645)
..++..+..+++.++++.+|+..+..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++
T Consensus 130 -~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~ 208 (331)
T PRK15079 130 -PKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQ 208 (331)
T ss_pred -cCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 00111233456678888999965678999999999999999999999999999999999999999999999887742
Q ss_pred --CCCeEEEEecCHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 305 --QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 305 --~g~tvIivsHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
.+.|||+||||++++.++||+|++|.+|++. ..|...+.
T Consensus 209 ~~~~~til~iTHdl~~~~~~~dri~vl~~G~iv-e~g~~~~i 249 (331)
T PRK15079 209 REMGLSLIFIAHDLAVVKHISDRVLVMYLGHAV-ELGTYDEV 249 (331)
T ss_pred HHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHH
Confidence 4899999999999999999999999999884 45654443
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=345.60 Aligned_cols=208 Identities=26% Similarity=0.428 Sum_probs=174.5
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----------ceEEE
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAF 165 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-----------~~i~~ 165 (645)
+|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEE
Confidence 5899999999998889999999999999999999999999999999999999999999998632 35999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchh
Q 006442 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (645)
Q Consensus 166 v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (645)
++|++.+++..|+.||+...... . . ..+....+.++.++++.
T Consensus 83 ~~q~~~~~~~~tv~enl~~~~~~-----------~---~------------------------~~~~~~~~~~~~~~l~~ 124 (241)
T PRK10895 83 LPQEASIFRRLSVYDNLMAVLQI-----------R---D------------------------DLSAEQREDRANELMEE 124 (241)
T ss_pred eccCCcccccCcHHHHHhhhhhc-----------c---c------------------------ccCHHHHHHHHHHHHHH
Confidence 99999887788999998532100 0 0 00011123445667788
Q ss_pred cCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhh
Q 006442 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQL 322 (645)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~ 322 (645)
+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|+ +.|.|||++||+++++..+
T Consensus 125 ~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~ 203 (241)
T PRK10895 125 FHIE-HLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAV 203 (241)
T ss_pred cCCH-HHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHh
Confidence 8885 46688899999999999999999999999999999999999999998887664 4689999999999999999
Q ss_pred cCeEEEEcCceeEEeccChHHH
Q 006442 323 CTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 323 ~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
||+++++++|++. +.|+++++
T Consensus 204 ~d~v~~l~~G~i~-~~~~~~~~ 224 (241)
T PRK10895 204 CERAYIVSQGHLI-AHGTPTEI 224 (241)
T ss_pred cCEEEEEeCCeEE-eeCCHHHH
Confidence 9999999999974 55665544
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=365.27 Aligned_cols=193 Identities=24% Similarity=0.342 Sum_probs=163.8
Q ss_pred eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------------ceEEEEeccCccCCCC
Q 006442 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIAFLSQEFEVSMSR 176 (645)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------------~~i~~v~Q~~~~~~~~ 176 (645)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++|++.+++..
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 38999999999999999999999999999999999999999999998642 2599999999988889
Q ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCccccccc
Q 006442 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (645)
Q Consensus 177 Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~ 256 (645)
||.||+...... ...+.....+++.++++.+|+. +..+++
T Consensus 122 Tv~enl~~~~~~---------------------------------------~~~~~~~~~~~~~e~L~~~gL~-~~~~~~ 161 (400)
T PRK10070 122 TVLDNTAFGMEL---------------------------------------AGINAEERREKALDALRQVGLE-NYAHSY 161 (400)
T ss_pred CHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHHcCCC-hhhhcC
Confidence 999998532110 0011112234567788899996 578899
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcCeEEEEcCc
Q 006442 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETEMG 332 (645)
Q Consensus 257 ~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d~i~~l~~G 332 (645)
+.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|+ +.++|||+||||++++..+||+|++|++|
T Consensus 162 ~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G 241 (400)
T PRK10070 162 PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNG 241 (400)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999988774 25899999999999999999999999999
Q ss_pred eeEEeccChHHH
Q 006442 333 VSRTYEGNYSQY 344 (645)
Q Consensus 333 ~~~~~~g~~~~~ 344 (645)
++. ..|...++
T Consensus 242 ~i~-~~g~~~~l 252 (400)
T PRK10070 242 EVV-QVGTPDEI 252 (400)
T ss_pred EEE-ecCCHHHH
Confidence 984 45655443
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-42 Score=339.20 Aligned_cols=192 Identities=29% Similarity=0.451 Sum_probs=167.1
Q ss_pred EEEeeeeeeCC-eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-------cchhccch
Q 006442 426 TIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------PNYFEQNQ 497 (645)
Q Consensus 426 ~~~~v~~~y~~-~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------~~~~~q~~ 497 (645)
+++|+++.|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|+.
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence 36899999987 78999999999999999999999999999999999999999999999998752 34556553
Q ss_pred hhcCCCCCCHHHHHHhhhcc--ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCC
Q 006442 498 AEALDLDKTVLETVAEAAED--WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575 (645)
Q Consensus 498 ~~~l~~~~tv~e~v~~~~~~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD 575 (645)
.. ..+..|+.+|+...... ....++.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 81 ~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 81 DY-QLFTDSVREELLLGLKELDAGNEQAETVLKDLDLY-ALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred hh-hhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCc-hhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 21 22467999999764322 2234678899999995 66789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEE
Q 006442 576 IPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQ 619 (645)
Q Consensus 576 ~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~ 619 (645)
+.+++.+.+.|+++ +.|||+||||++++.++||++++|++|+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999865 469999999999999999999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=356.36 Aligned_cols=210 Identities=17% Similarity=0.264 Sum_probs=173.7
Q ss_pred CccEEEEeEEEEeCC-----eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC---------
Q 006442 95 SSGVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------- 160 (645)
Q Consensus 95 ~~~i~i~nls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------- 160 (645)
.+.|+++|++|+|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|..
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 457999999999964 359999999999999999999999999999999999999999999987521
Q ss_pred -----------------ceEEEEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHH
Q 006442 161 -----------------MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDL 222 (645)
Q Consensus 161 -----------------~~i~~v~Q~~~-~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (645)
..|+||+|++. ..+..||.||+...... .
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~--------------~------------------- 145 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVA--------------L------------------- 145 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHh--------------c-------------------
Confidence 24999999983 23456999998532100 0
Q ss_pred HHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 006442 223 LQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL 302 (645)
Q Consensus 223 ~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L 302 (645)
..+.....+++.++++.+|+.....++.+.+|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|
T Consensus 146 ------~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L 219 (320)
T PRK13631 146 ------GVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLI 219 (320)
T ss_pred ------CCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHH
Confidence 01111233456677888898645678889999999999999999999999999999999999999999998877
Q ss_pred c---cCCCeEEEEecCHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 303 G---KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 303 ~---~~g~tvIivsHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
+ +.|.|||+||||++++..+||+|++|++|++. ..|+..++
T Consensus 220 ~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~-~~g~~~~~ 263 (320)
T PRK13631 220 LDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKIL-KTGTPYEI 263 (320)
T ss_pred HHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 4 35899999999999999999999999999984 55765544
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=362.86 Aligned_cols=200 Identities=24% Similarity=0.324 Sum_probs=171.1
Q ss_pred EEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------------ceEEEEeccC
Q 006442 105 KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIAFLSQEF 170 (645)
Q Consensus 105 ~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------------~~i~~v~Q~~ 170 (645)
|.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..|+||+|++
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 46788889999999999999999999999999999999999999999999998742 3699999999
Q ss_pred ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCc
Q 006442 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (645)
Q Consensus 171 ~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~ 250 (645)
++++.+||+||+...... ...+.....+++.++++.+|+.
T Consensus 81 ~l~~~~TV~eNi~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~vgL~- 120 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPEL---------------------------------------LGWPEQERKEKALELLKLVGLE- 120 (363)
T ss_pred cCCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHhcCCc-
Confidence 999999999998532100 0011123345677888999996
Q ss_pred ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcCeE
Q 006442 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKI 326 (645)
Q Consensus 251 ~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d~i 326 (645)
...++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.+.|. +.++|||+||||++++..+||+|
T Consensus 121 ~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI 200 (363)
T TIGR01186 121 EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRI 200 (363)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 67899999999999999999999999999999999999999999999988763 34899999999999999999999
Q ss_pred EEEcCceeEEeccChHHHH
Q 006442 327 VETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 327 ~~l~~G~~~~~~g~~~~~~ 345 (645)
++|++|++. ..|..++++
T Consensus 201 ~vl~~G~iv-~~g~~~ei~ 218 (363)
T TIGR01186 201 VIMKAGEIV-QVGTPDEIL 218 (363)
T ss_pred EEEeCCEEE-eeCCHHHHH
Confidence 999999974 556655543
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=360.94 Aligned_cols=204 Identities=27% Similarity=0.453 Sum_probs=179.5
Q ss_pred CcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cchh
Q 006442 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYF 493 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~ 493 (645)
..+|+++|+++.|+++.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++. .+|+
T Consensus 4 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 83 (351)
T PRK11432 4 KNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83 (351)
T ss_pred CcEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 45799999999999888999999999999999999999999999999999999999999999998762 2455
Q ss_pred ccchhhcCCCCCCHHHHHHhhhcc------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEe
Q 006442 494 EQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567 (645)
Q Consensus 494 ~q~~~~~l~~~~tv~e~v~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 567 (645)
+|+ ..+++.+|+.+|+.+.... ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||
T Consensus 84 fQ~--~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~-~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLL 160 (351)
T PRK11432 84 FQS--YALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLA-GFEDRYVDQISGGQQQRVALARALILKPKVLLF 160 (351)
T ss_pred eCC--cccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 554 4677889999999876431 1134678899999994 678999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 568 DEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 568 DEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
||||++||+.++..+.+.|++. +.|+|+||||.+++..+||||++|++|++.. .|+.+++.
T Consensus 161 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~-~g~~~~~~ 225 (351)
T PRK11432 161 DEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQ-IGSPQELY 225 (351)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 9999999999999999988753 5699999999999999999999999999986 46666553
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=352.98 Aligned_cols=207 Identities=24% Similarity=0.385 Sum_probs=172.4
Q ss_pred EEEEeEEEEeCC-----eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC------------
Q 006442 98 VKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (645)
Q Consensus 98 i~i~nls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~------------ 160 (645)
|+++|++|+|++ .++|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 899999999964 359999999999999999999999999999999999999999999998742
Q ss_pred --ceEEEEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHH
Q 006442 161 --MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (645)
Q Consensus 161 --~~i~~v~Q~~~-~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (645)
..||||+|++. ..+..||.||+...... ...+.....+
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~---------------------------------------~~~~~~~~~~ 123 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKN---------------------------------------FKMNLDEVKN 123 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHH---------------------------------------cCCCHHHHHH
Confidence 25899999973 22345999998522100 0011122344
Q ss_pred HHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEe
Q 006442 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIIS 313 (645)
Q Consensus 238 ~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivs 313 (645)
++.+++..+|+..+..++.+.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|++ .|.|||+||
T Consensus 124 ~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vt 203 (286)
T PRK13646 124 YAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVS 203 (286)
T ss_pred HHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 5677888899964567888999999999999999999999999999999999999999999888752 489999999
Q ss_pred cCHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
||++++..+||+|+++++|++. ..|...+.
T Consensus 204 H~~~~~~~~~dri~~l~~G~i~-~~g~~~~~ 233 (286)
T PRK13646 204 HDMNEVARYADEVIVMKEGSIV-SQTSPKEL 233 (286)
T ss_pred cCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 9999999999999999999984 55665544
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=343.17 Aligned_cols=202 Identities=26% Similarity=0.414 Sum_probs=165.6
Q ss_pred cEEEEeEEEEeCCe----eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC------------
Q 006442 97 GVKLENISKSYKGV----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (645)
Q Consensus 97 ~i~i~nls~~y~~~----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~------------ 160 (645)
+|+++|++++|++. ++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|..
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 37899999999765 79999999999999999999999999999999999999999999987632
Q ss_pred -ceEEEEeccC--ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHH
Q 006442 161 -MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (645)
Q Consensus 161 -~~i~~v~Q~~--~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (645)
..++|++|++ .+.+..||++|+....... .. .. .....+.
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~--------------~~--~~---------------------~~~~~~~ 123 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIH--------------GK--LS---------------------KKEARKE 123 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhc--------------cC--Cc---------------------HHHHHHH
Confidence 2599999998 3556789999985321100 00 00 0000011
Q ss_pred HHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEe
Q 006442 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIIS 313 (645)
Q Consensus 238 ~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivs 313 (645)
.+.++++.+++.....++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .|.|||++|
T Consensus 124 ~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~s 203 (228)
T cd03257 124 AVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFIT 203 (228)
T ss_pred HHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 1235677778754567888999999999999999999999999999999999999999999988753 389999999
Q ss_pred cCHHHHHhhcCeEEEEcCceeE
Q 006442 314 HDRAFLDQLCTKIVETEMGVSR 335 (645)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~ 335 (645)
||++++..+||+|+++++|++.
T Consensus 204 H~~~~~~~~~d~i~~l~~G~i~ 225 (228)
T cd03257 204 HDLGVVAKIADRVAVMYAGKIV 225 (228)
T ss_pred CCHHHHHHhcCeEEEEeCCEEE
Confidence 9999999999999999999873
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=346.87 Aligned_cols=197 Identities=28% Similarity=0.425 Sum_probs=172.8
Q ss_pred CCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceec-----ccchhcc
Q 006442 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----LPNYFEQ 495 (645)
Q Consensus 421 ~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~-----~~~~~~q 495 (645)
.+++|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ ..+|++|
T Consensus 9 ~~~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q 88 (257)
T PRK11247 9 QGTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQ 88 (257)
T ss_pred CCCcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEec
Confidence 35679999999999988899999999999999999999999999999999999999999999998764 2346665
Q ss_pred chhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCC
Q 006442 496 NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575 (645)
Q Consensus 496 ~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD 575 (645)
+. .+.+..|+.+|+..........++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 89 ~~--~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD 165 (257)
T PRK11247 89 DA--RLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLA-DRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALD 165 (257)
T ss_pred Cc--cCCCCCcHHHHHHhcccchHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 43 4556689999997653221235678899999995 66789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEe
Q 006442 576 IPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (645)
Q Consensus 576 ~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~ 620 (645)
+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++.
T Consensus 166 ~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 166 ALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999988754 5699999999999999999999999999975
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=360.85 Aligned_cols=204 Identities=26% Similarity=0.428 Sum_probs=179.6
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cchhc
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFE 494 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~ 494 (645)
.+|+++|++++|+++.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++. .+|++
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~ 82 (353)
T TIGR03265 3 PYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVF 82 (353)
T ss_pred cEEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 3699999999999888999999999999999999999999999999999999999999999998763 24555
Q ss_pred cchhhcCCCCCCHHHHHHhhhcc------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEee
Q 006442 495 QNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568 (645)
Q Consensus 495 q~~~~~l~~~~tv~e~v~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 568 (645)
|+ ..+++.+||.+|+.++... ....++.++++.+++. +..++++.+|||||||||+|||||+.+|++||||
T Consensus 83 Q~--~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~-~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLD 159 (353)
T TIGR03265 83 QS--YALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLP-GSERKYPGQLSGGQQQRVALARALATSPGLLLLD 159 (353)
T ss_pred CC--cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 54 4677889999999876432 1234678899999994 6889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 569 EPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 569 EPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|||++||+.++..+.+.|++. +.|+|+||||++++..+|||+++|++|++... |+.+++.+
T Consensus 160 EP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~-g~~~~~~~ 224 (353)
T TIGR03265 160 EPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQV-GTPQEIYR 224 (353)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE-cCHHHHHh
Confidence 999999999999999988753 56999999999999999999999999999864 66665543
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=340.41 Aligned_cols=201 Identities=25% Similarity=0.397 Sum_probs=165.8
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----------ceEEEE
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFL 166 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-----------~~i~~v 166 (645)
|+++|++++|++.++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV 80 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEe
Confidence 478999999998889999999999999999999999999999999999999999999987632 249999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhc
Q 006442 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (645)
Q Consensus 167 ~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (645)
+|++.+++..|+++|+....... . ......++.++++.+
T Consensus 81 ~q~~~~~~~~t~~~~l~~~~~~~-~----------------------------------------~~~~~~~~~~~l~~~ 119 (222)
T cd03224 81 PEGRRIFPELTVEENLLLGAYAR-R----------------------------------------RAKRKARLERVYELF 119 (222)
T ss_pred ccccccCCCCcHHHHHHHHhhhc-C----------------------------------------chhHHHHHHHHHHHH
Confidence 99998878889999985321100 0 000112223334444
Q ss_pred -CCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhh
Q 006442 247 -GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (645)
Q Consensus 247 -gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~ 322 (645)
++. ...++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++ .++|||++|||++++..+
T Consensus 120 ~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~ 198 (222)
T cd03224 120 PRLK-ERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEI 198 (222)
T ss_pred Hhhh-hhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 232 456788999999999999999999999999999999999999999999988753 578999999999999999
Q ss_pred cCeEEEEcCceeEEeccCh
Q 006442 323 CTKIVETEMGVSRTYEGNY 341 (645)
Q Consensus 323 ~d~i~~l~~G~~~~~~g~~ 341 (645)
||+++++++|++. ..|+.
T Consensus 199 ~d~i~~l~~G~i~-~~~~~ 216 (222)
T cd03224 199 ADRAYVLERGRVV-LEGTA 216 (222)
T ss_pred ccEEEEeeCCeEE-EeCCH
Confidence 9999999999874 44543
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=344.33 Aligned_cols=208 Identities=21% Similarity=0.297 Sum_probs=172.8
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCC-----ccEEEEcCCC-----------
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-----SGNVIKAKSN----------- 160 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~-----~G~I~~~~~~----------- 160 (645)
+|+++|++++|++.++++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 488999999999888999999999999999999999999999999999999998 9999987642
Q ss_pred -ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHH
Q 006442 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (645)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (645)
..++|++|++.+++ .|++||+...+.. .. ........+++
T Consensus 81 ~~~i~~v~q~~~~~~-~tv~e~l~~~~~~---------------~~-----------------------~~~~~~~~~~~ 121 (247)
T TIGR00972 81 RRRVGMVFQKPNPFP-MSIYDNIAYGPRL---------------HG-----------------------IKDKKELDEIV 121 (247)
T ss_pred HhheEEEecCcccCC-CCHHHHHHhHHHh---------------cC-----------------------CCCHHHHHHHH
Confidence 25999999998876 9999998532110 00 00111223456
Q ss_pred HhhchhcCCCc---ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 006442 240 SKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (645)
Q Consensus 240 ~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsH 314 (645)
.++++.+|+.. +..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++ .++|||++||
T Consensus 122 ~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH 201 (247)
T TIGR00972 122 EESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTH 201 (247)
T ss_pred HHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEec
Confidence 67788888852 456788999999999999999999999999999999999999999999988753 2589999999
Q ss_pred CHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 315 d~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
+++++..+||++++|++|++. ..|+.+++
T Consensus 202 ~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 230 (247)
T TIGR00972 202 NMQQAARISDRTAFFYDGELV-EYGPTEQI 230 (247)
T ss_pred CHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999974 44554443
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=319.44 Aligned_cols=207 Identities=23% Similarity=0.377 Sum_probs=175.9
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc--------eEEEEecc
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQE 169 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~--------~i~~v~Q~ 169 (645)
|.++++.|+|+..+. .++++|+.||+++|+||+||||||||++|+|+..|.+|+|.++|.+. -+++++|+
T Consensus 2 l~L~~V~~~y~~~~~--~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQE 79 (231)
T COG3840 2 LALDDVRFSYGHLPM--RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQE 79 (231)
T ss_pred ccccceEEeeCcceE--EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhc
Confidence 678999999987653 36789999999999999999999999999999999999999987642 49999999
Q ss_pred CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCC
Q 006442 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (645)
Q Consensus 170 ~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (645)
.+++..+||.+|+-.+........ ..-+++++..+..+|+.
T Consensus 80 nNLFaHLtV~qNigLGl~P~LkL~---------------------------------------a~~r~~v~~aa~~vGl~ 120 (231)
T COG3840 80 NNLFAHLTVAQNIGLGLSPGLKLN---------------------------------------AEQREKVEAAAAQVGLA 120 (231)
T ss_pred cccchhhhhhhhhcccCCcccccC---------------------------------------HHHHHHHHHHHHHhChh
Confidence 999999999999965443321110 01135666778888996
Q ss_pred cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhhcCe
Q 006442 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCTK 325 (645)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L----~~~g~tvIivsHd~~~l~~~~d~ 325 (645)
...+|.+.+|||||||||||||+|+++-+||||||||++|||.-+..+..++ .+.+.|++||||.++++.+++++
T Consensus 121 -~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~ 199 (231)
T COG3840 121 -GFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADR 199 (231)
T ss_pred -hHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhc
Confidence 6889999999999999999999999999999999999999999988877654 46789999999999999999999
Q ss_pred EEEEcCceeEEeccChHHHHHH
Q 006442 326 IVETEMGVSRTYEGNYSQYVLE 347 (645)
Q Consensus 326 i~~l~~G~~~~~~g~~~~~~~~ 347 (645)
++++++|++ .+.|...+++..
T Consensus 200 ~~fl~~Gri-~~~g~~~~~~~~ 220 (231)
T COG3840 200 VVFLDNGRI-AAQGSTQELLSG 220 (231)
T ss_pred eEEEeCCEE-EeeccHHHHhcc
Confidence 999999998 577776655443
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-42 Score=334.95 Aligned_cols=221 Identities=29% Similarity=0.410 Sum_probs=186.0
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc-----------eEE
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KIA 164 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~-----------~i~ 164 (645)
+.+++++++++||+-.+++||||+|++||+++||||||||||||+++|+|.++|++|+|.+.|.++ .|+
T Consensus 3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred ceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 458899999999999999999999999999999999999999999999999999999999988643 589
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
.-||.+.+++++||.||++.+...... +...+... ...-...++.++..++|+
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~-------~~~~l~~~--------------------~~~~~e~~~~e~A~~~Le 135 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLG-------LSGLLGRP--------------------RARKEEREARERARELLE 135 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhh-------hhhhhccc--------------------cchhhHHHHHHHHHHHHH
Confidence 999999999999999999754321100 00111000 000112345677888999
Q ss_pred hcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---c-CCCeEEEEecCHHHHH
Q 006442 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---K-QDVPMVIISHDRAFLD 320 (645)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~-~g~tvIivsHd~~~l~ 320 (645)
.+|+. +..+++..+||+|||+|+.|||||+.+|++||||||.+||.+.....+.++++ + .|.||++|.||++.+.
T Consensus 136 ~vgL~-~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm 214 (250)
T COG0411 136 FVGLG-ELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVM 214 (250)
T ss_pred HcCCc-hhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHh
Confidence 99997 78899999999999999999999999999999999999999999998888764 3 5699999999999999
Q ss_pred hhcCeEEEEcCceeEEeccChHHHH
Q 006442 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 321 ~~~d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
.+||||++|+.|++ ...|++.+..
T Consensus 215 ~l~dri~Vl~~G~~-IAeG~P~eV~ 238 (250)
T COG0411 215 GLADRIVVLNYGEV-IAEGTPEEVR 238 (250)
T ss_pred hhccEEEeccCCcC-cccCCHHHHh
Confidence 99999999999987 5778876643
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=338.68 Aligned_cols=198 Identities=28% Similarity=0.375 Sum_probs=171.2
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---------cchhcc
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNYFEQ 495 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------~~~~~q 495 (645)
|+++|++++|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .+|++|
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQ 80 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecC
Confidence 57899999999888999999999999999999999999999999999999999999999997652 234555
Q ss_pred chhhcCCCCCCHHHHHHhhhcc--c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeC
Q 006442 496 NQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (645)
Q Consensus 496 ~~~~~l~~~~tv~e~v~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 569 (645)
+ ..+.+..|+.+|+...... . ...++.++++.+++. +..++++.+|||||||||+||||++.+|++|||||
T Consensus 81 ~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDE 157 (220)
T cd03265 81 D--LSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLL-EAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDE 157 (220)
T ss_pred C--ccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 4 3455678999999764221 1 123578899999994 66789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChh
Q 006442 570 PTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626 (645)
Q Consensus 570 Pt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~ 626 (645)
||++||+.+++.+.+.|.+. +.|||+||||++++..+|||+++|++|++... ++.+
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~-~~~~ 217 (220)
T cd03265 158 PTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAE-GTPE 217 (220)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe-CChH
Confidence 99999999999999998753 56999999999999999999999999999853 4443
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=341.44 Aligned_cols=198 Identities=23% Similarity=0.396 Sum_probs=165.9
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCC-----CCCccEEEEcCCC------------
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE-----EPDSGNVIKAKSN------------ 160 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~-----~p~~G~I~~~~~~------------ 160 (645)
|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|++ +|++|+|.++|..
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR 80 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence 57899999998888999999999999999999999999999999999999 9999999998742
Q ss_pred ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHH
Q 006442 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (645)
Q Consensus 161 ~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 240 (645)
..++|++|++.++ ..||+||+...... .. .......++++.
T Consensus 81 ~~i~~~~q~~~~~-~~tv~e~l~~~~~~---------------~~-----------------------~~~~~~~~~~~~ 121 (227)
T cd03260 81 RRVGMVFQKPNPF-PGSIYDNVAYGLRL---------------HG-----------------------IKLKEELDERVE 121 (227)
T ss_pred hhEEEEecCchhc-cccHHHHHHhHHHh---------------cC-----------------------CCcHHHHHHHHH
Confidence 2599999998876 78999998532110 00 000011234566
Q ss_pred hhchhcCCCccccccc--CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccC--CCeEEEEecCH
Q 006442 241 KLMPELGFTADDGDRL--VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVIISHDR 316 (645)
Q Consensus 241 ~ll~~lgl~~~~~~~~--~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~--g~tvIivsHd~ 316 (645)
++++.+|+. +..++. +.+||||||||++|||||+.+|++|||||||++||+.++.++.++|++. ..|||++|||+
T Consensus 122 ~~l~~~~l~-~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~ 200 (227)
T cd03260 122 EALRKAALW-DEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNM 200 (227)
T ss_pred HHHHHcCCC-hHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccH
Confidence 778888886 344555 5999999999999999999999999999999999999999999887531 27999999999
Q ss_pred HHHHhhcCeEEEEcCceeE
Q 006442 317 AFLDQLCTKIVETEMGVSR 335 (645)
Q Consensus 317 ~~l~~~~d~i~~l~~G~~~ 335 (645)
+++..+||+++++++|++.
T Consensus 201 ~~~~~~~d~i~~l~~G~i~ 219 (227)
T cd03260 201 QQAARVADRTAFLLNGRLV 219 (227)
T ss_pred HHHHHhCCEEEEEeCCEEE
Confidence 9999999999999999874
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=343.27 Aligned_cols=202 Identities=23% Similarity=0.352 Sum_probs=170.3
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceEEEE
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i~~v 166 (645)
.|+++|++|+|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~ 82 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMV 82 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEE
Confidence 4899999999988889999999999999999999999999999999999999999999998742 259999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhc
Q 006442 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (645)
Q Consensus 167 ~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (645)
+|++.++. .|+.+|+...... . . ....++.++++.+
T Consensus 83 ~q~~~~~~-~tv~e~l~~~~~~---------------~--------------------------~--~~~~~~~~~l~~~ 118 (241)
T PRK14250 83 FQQPHLFE-GTVKDNIEYGPML---------------K--------------------------G--EKNVDVEYYLSIV 118 (241)
T ss_pred ecCchhch-hhHHHHHhcchhh---------------c--------------------------C--cHHHHHHHHHHHc
Confidence 99987754 6999997521100 0 0 0012345667778
Q ss_pred CCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhh
Q 006442 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQL 322 (645)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~ 322 (645)
|+..+..++.+.+||||||||++|||||+.+|++|||||||++||+.+++++.+.|++ .|.|||++|||++++..+
T Consensus 119 ~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~ 198 (241)
T PRK14250 119 GLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRI 198 (241)
T ss_pred CCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHh
Confidence 8854567888999999999999999999999999999999999999999999887753 489999999999999999
Q ss_pred cCeEEEEcCceeEEeccChHH
Q 006442 323 CTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 323 ~d~i~~l~~G~~~~~~g~~~~ 343 (645)
||+|+++++|++. ..|...+
T Consensus 199 ~d~i~~l~~G~i~-~~~~~~~ 218 (241)
T PRK14250 199 GDYTAFLNKGILV-EYAKTYD 218 (241)
T ss_pred CCEEEEEeCCEEE-EeCCHHH
Confidence 9999999999984 3344333
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=342.46 Aligned_cols=215 Identities=29% Similarity=0.429 Sum_probs=176.3
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----------ceEEE
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAF 165 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-----------~~i~~ 165 (645)
+|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGR 81 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeE
Confidence 5899999999988889999999999999999999999999999999999999999999998742 24999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchh
Q 006442 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (645)
Q Consensus 166 v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (645)
++|++.+++..|+.||+......... +...+ ........+.++.++++.
T Consensus 82 ~~q~~~~~~~~tv~~nl~~~~~~~~~-------~~~~~------------------------~~~~~~~~~~~~~~~l~~ 130 (242)
T TIGR03411 82 KFQKPTVFENLTVFENLELALPRDKS-------VFASL------------------------FFRLSAEEKDRIEEVLET 130 (242)
T ss_pred eccccccCCCCCHHHHHHHhhhcccc-------ccccc------------------------ccccHHHHHHHHHHHHHH
Confidence 99999888888999998532110000 00000 000001123456778888
Q ss_pred cCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhc
Q 006442 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLC 323 (645)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~ 323 (645)
+|+. +..++.+.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .++|||++||+++++..+|
T Consensus 131 ~~l~-~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~ 209 (242)
T TIGR03411 131 IGLA-DEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIA 209 (242)
T ss_pred cCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhC
Confidence 8986 567888999999999999999999999999999999999999999999988753 3689999999999999999
Q ss_pred CeEEEEcCceeEEeccChHHH
Q 006442 324 TKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 324 d~i~~l~~G~~~~~~g~~~~~ 344 (645)
|+|+++++|++. ..|+..++
T Consensus 210 d~i~~l~~g~~~-~~~~~~~~ 229 (242)
T TIGR03411 210 DKVTVLHQGSVL-AEGSLDQV 229 (242)
T ss_pred CEEEEEECCeEE-eeCCHHHH
Confidence 999999999974 55665544
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=345.82 Aligned_cols=206 Identities=29% Similarity=0.394 Sum_probs=173.1
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceEEEE
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i~~v 166 (645)
+|+++|++++|+++.+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..++|+
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL 81 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEE
Confidence 4899999999998889999999999999999999999999999999999999999999998742 259999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhc
Q 006442 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (645)
Q Consensus 167 ~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (645)
+|++.+++..||+||+....... .........++.++++.+
T Consensus 82 ~q~~~~~~~~tv~e~l~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~~~ 122 (258)
T PRK13548 82 PQHSSLSFPFTVEEVVAMGRAPH---------------------------------------GLSRAEDDALVAAALAQV 122 (258)
T ss_pred ccCCcCCCCCCHHHHHHhhhccc---------------------------------------CCCcHHHHHHHHHHHHHc
Confidence 99988878889999985321000 000011223456778888
Q ss_pred CCCcccccccCCCCChHHHHHHHHHHHHc------cCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCH
Q 006442 247 GFTADDGDRLVASFSSGWQMRMSLGKILL------QDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDR 316 (645)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRvaLAraL~------~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~ 316 (645)
|+. +..++.+.+|||||||||+|||||+ .+|++|||||||++||+.+++.+.++|+ +.|.|||++|||+
T Consensus 123 ~l~-~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 201 (258)
T PRK13548 123 DLA-HLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL 201 (258)
T ss_pred CCH-hHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 885 5678889999999999999999999 5999999999999999999998888764 4588999999999
Q ss_pred HHHHhhcCeEEEEcCceeEEeccChHH
Q 006442 317 AFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 317 ~~l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
+++..+||+|+++++|++. ..|...+
T Consensus 202 ~~~~~~~d~i~~l~~G~i~-~~~~~~~ 227 (258)
T PRK13548 202 NLAARYADRIVLLHQGRLV-ADGTPAE 227 (258)
T ss_pred HHHHHhcCEEEEEECCEEE-eeCCHHH
Confidence 9999999999999999874 4565443
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=353.01 Aligned_cols=205 Identities=26% Similarity=0.409 Sum_probs=176.9
Q ss_pred CcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---------cch
Q 006442 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNY 492 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------~~~ 492 (645)
..+|+++|++++|+++.+|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 2 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~ 81 (303)
T TIGR01288 2 NVAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGV 81 (303)
T ss_pred CcEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEE
Confidence 34799999999999888999999999999999999999999999999999999999999999997652 245
Q ss_pred hccchhhcCCCCCCHHHHHHhhhc--ccc----HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEE
Q 006442 493 FEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (645)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~v~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 566 (645)
++|+ ..+.+..|+.+|+..... ... ...+..+++.+++. +..++++.+|||||||||+|||||+.+|++||
T Consensus 82 v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 158 (303)
T TIGR01288 82 VPQF--DNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-SKADVRVALLSGGMKRRLTLARALINDPQLLI 158 (303)
T ss_pred Eecc--ccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 5554 345667899999974321 111 13456789999994 66789999999999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 567 LDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 567 LDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|||||+|||+.++..+.+.|+++ +.|||++|||++++.++|||+++|++|++.. .|+.+++.+
T Consensus 159 LDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~~ 224 (303)
T TIGR01288 159 LDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIA-EGRPHALID 224 (303)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHHh
Confidence 99999999999999999999875 5699999999999999999999999999975 577776654
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=344.59 Aligned_cols=207 Identities=25% Similarity=0.425 Sum_probs=174.1
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----------------
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------------- 160 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------------- 160 (645)
|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|..
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEK 80 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchh
Confidence 478999999988889999999999999999999999999999999999999999999987632
Q ss_pred ------ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhc
Q 006442 161 ------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (645)
Q Consensus 161 ------~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (645)
..++|++|++.+++..|+.+|+....... . .+....
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--------------~------------------------~~~~~~ 122 (252)
T TIGR03005 81 HLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--------------L------------------------GMARAE 122 (252)
T ss_pred HHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--------------c------------------------CCCHHH
Confidence 25999999998888899999985321000 0 001112
Q ss_pred HHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEE
Q 006442 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMV 310 (645)
Q Consensus 235 ~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvI 310 (645)
.+.++.++++.+|+. +..++.+.+||||||||++|||||+.+|++|||||||++||+.++.++.++|++ .|.|||
T Consensus 123 ~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii 201 (252)
T TIGR03005 123 AEKRAMELLDMVGLA-DKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTML 201 (252)
T ss_pred HHHHHHHHHHHcCCh-hHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEE
Confidence 234566778888886 567888999999999999999999999999999999999999999999887743 489999
Q ss_pred EEecCHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 311 ivsHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
++||+++++..+||+++++++|++. ..|+..++
T Consensus 202 ivsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 234 (252)
T TIGR03005 202 LVTHEMGFAREFADRVCFFDKGRIV-EQGKPDEI 234 (252)
T ss_pred EEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999999984 55665544
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=356.88 Aligned_cols=207 Identities=26% Similarity=0.389 Sum_probs=179.7
Q ss_pred CCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---------cc
Q 006442 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PN 491 (645)
Q Consensus 421 ~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------~~ 491 (645)
+..+|+++|++++|+++.+|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 38 ~~~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 117 (340)
T PRK13536 38 STVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIG 117 (340)
T ss_pred CceeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEE
Confidence 356799999999999889999999999999999999999999999999999999999999999998753 24
Q ss_pred hhccchhhcCCCCCCHHHHHHhhhcc--cc----HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeE
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 565 (645)
|++|+ ..+.+..|+.+|+...... .. ...+.++++.+++. +..++++.+|||||||||+||+||+.+|++|
T Consensus 118 ~v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~-~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lL 194 (340)
T PRK13536 118 VVPQF--DNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-SKADARVSDLSGGMKRRLTLARALINDPQLL 194 (340)
T ss_pred EEeCC--ccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhCCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 55554 3566788999999753221 11 23456789999995 6679999999999999999999999999999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHH
Q 006442 566 VLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSL 631 (645)
Q Consensus 566 lLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~ 631 (645)
||||||+|||+.++..+.++|+++ +.|||++||+++++.++||||++|++|+++. .|+.+++.+.
T Consensus 195 iLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~-~g~~~~l~~~ 262 (340)
T PRK13536 195 ILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIA-EGRPHALIDE 262 (340)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHHhh
Confidence 999999999999999999999875 4699999999999999999999999999984 5777776543
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=342.20 Aligned_cols=212 Identities=25% Similarity=0.317 Sum_probs=172.8
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCC--CCCccEEEEcCCC-----------ceEE
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKAKSN-----------MKIA 164 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~--~p~~G~I~~~~~~-----------~~i~ 164 (645)
|+++|++++|++..+|+|+||+|++|++++|+||||||||||+++|+|++ +|++|+|.++|.+ ..++
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLF 80 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceE
Confidence 47899999999888999999999999999999999999999999999995 7999999998742 2389
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
|++|++.+++..|+.+|+........ ..... ...+.....+++.++++
T Consensus 81 ~v~q~~~~~~~~t~~~~~~~~~~~~~-----------~~~~~---------------------~~~~~~~~~~~~~~~l~ 128 (243)
T TIGR01978 81 LAFQYPEEIPGVSNLEFLRSALNARR-----------SARGE---------------------EPLDLLDFLKLLKAKLA 128 (243)
T ss_pred eeeccccccCCcCHHHHHHHHHHHhh-----------ccccc---------------------ccccHHHHHHHHHHHHH
Confidence 99999988888899999853211000 00000 00011123346678888
Q ss_pred hcCCCcccccccCC-CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHH
Q 006442 245 ELGFTADDGDRLVA-SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLD 320 (645)
Q Consensus 245 ~lgl~~~~~~~~~~-~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~ 320 (645)
.+|+.....++++. +||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .|.|||++|||++++.
T Consensus 129 ~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~ 208 (243)
T TIGR01978 129 LLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLN 208 (243)
T ss_pred HcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHH
Confidence 89996456677776 5999999999999999999999999999999999999999988753 4789999999999999
Q ss_pred hh-cCeEEEEcCceeEEeccChH
Q 006442 321 QL-CTKIVETEMGVSRTYEGNYS 342 (645)
Q Consensus 321 ~~-~d~i~~l~~G~~~~~~g~~~ 342 (645)
.+ ||+++++++|++. +.|+.+
T Consensus 209 ~~~~d~i~~l~~G~i~-~~g~~~ 230 (243)
T TIGR01978 209 YIKPDYVHVLLDGRIV-KSGDVE 230 (243)
T ss_pred hhcCCeEEEEeCCEEE-EecCHH
Confidence 98 8999999999973 556654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=350.92 Aligned_cols=204 Identities=30% Similarity=0.461 Sum_probs=180.4
Q ss_pred EEEEEeeeeeeC-CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---------cchh
Q 006442 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNYF 493 (645)
Q Consensus 424 ~i~~~~v~~~y~-~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------~~~~ 493 (645)
.++++|+++.|+ ++.+|+||||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.+.. .+|+
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~ 83 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV 83 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEE
Confidence 478999999999 699999999999999999999999999999999999999999999999997753 3566
Q ss_pred ccchhhcCCCCCCHHHHHHhhhccc------cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEe
Q 006442 494 EQNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567 (645)
Q Consensus 494 ~q~~~~~l~~~~tv~e~v~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 567 (645)
+|.. .+.+.+|+.|++.+....+ ..+.+.++++.+++.. ..++++..||+||||||.||+||+.+|++|||
T Consensus 84 ~~~~--~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliL 160 (293)
T COG1131 84 PQEP--SLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED-KANKKVRTLSGGMKQRLSIALALLHDPELLIL 160 (293)
T ss_pred ccCC--CCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch-hhCcchhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 6653 4778999999998765432 2457889999999964 44888999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc---C-ceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHH
Q 006442 568 DEPTNHLDIPSKEMLEEAISEY---K-GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSL 631 (645)
Q Consensus 568 DEPt~~LD~~s~~~l~~~l~~~---~-~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~ 631 (645)
||||+|||+.++..+.+.|+++ + .|||++||.++.+..+||||++|++|+++.+ |..+++.+.
T Consensus 161 DEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~-g~~~~l~~~ 227 (293)
T COG1131 161 DEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAE-GTPEELKEK 227 (293)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEe-CCHHHHHHh
Confidence 9999999999999999999865 3 4999999999999999999999999999964 577765544
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=346.72 Aligned_cols=208 Identities=25% Similarity=0.466 Sum_probs=171.8
Q ss_pred cEEEEeEEEEeC---------CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-------
Q 006442 97 GVKLENISKSYK---------GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------- 160 (645)
Q Consensus 97 ~i~i~nls~~y~---------~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~------- 160 (645)
+|+++|++|+|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 589999999995 3579999999999999999999999999999999999999999999998632
Q ss_pred ------ceEEEEeccCc--cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCCh
Q 006442 161 ------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (645)
Q Consensus 161 ------~~i~~v~Q~~~--~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (645)
..|+|++|++. +.+..|+.||+...... . ..+..
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~--------------~------------------------~~~~~ 123 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRH--------------L------------------------TSLDE 123 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHH--------------h------------------------cCCCH
Confidence 25999999973 44568999997522100 0 00111
Q ss_pred hcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCe
Q 006442 233 DTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVP 308 (645)
Q Consensus 233 ~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~t 308 (645)
.....++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|+|
T Consensus 124 ~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~t 203 (265)
T TIGR02769 124 SEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTA 203 (265)
T ss_pred HHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcE
Confidence 122345667788889864567888999999999999999999999999999999999999999988887743 4899
Q ss_pred EEEEecCHHHHHhhcCeEEEEcCceeEEeccChHH
Q 006442 309 MVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 309 vIivsHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
||++|||++++..+||+++++++|++. ..|...+
T Consensus 204 iiivsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~ 237 (265)
T TIGR02769 204 YLFITHDLRLVQSFCQRVAVMDKGQIV-EECDVAQ 237 (265)
T ss_pred EEEEeCCHHHHHHHhcEEEEEeCCEEE-EECCHHH
Confidence 999999999999999999999999874 5565443
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-41 Score=340.87 Aligned_cols=202 Identities=29% Similarity=0.454 Sum_probs=174.3
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cchhcc
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~q 495 (645)
+|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 81 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQ 81 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEec
Confidence 489999999999888999999999999999999999999999999999999999999999997652 235555
Q ss_pred chhhcCCCCCCHHHHHHhhhcc--------c--cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeE
Q 006442 496 NQAEALDLDKTVLETVAEAAED--------W--RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (645)
Q Consensus 496 ~~~~~l~~~~tv~e~v~~~~~~--------~--~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 565 (645)
+ ..+.+..|+.+|+...... . ..+.+..+++.+++. +..++++.+|||||||||+|||||+.+|++|
T Consensus 82 ~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 158 (239)
T cd03296 82 H--YALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLD-WLADRYPAQLSGGQRQRVALARALAVEPKVL 158 (239)
T ss_pred C--CcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 4 3455678999999764321 1 123467889999994 6678999999999999999999999999999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 566 VLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 566 lLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
||||||++||+.+++.+.+.|.++ +.|||+||||++++..+||++++|++|++.. .++.+++.
T Consensus 159 llDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 225 (239)
T cd03296 159 LLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQ-VGTPDEVY 225 (239)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE-ecCHHHHh
Confidence 999999999999999999999864 4699999999999999999999999999975 46666654
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=321.62 Aligned_cols=206 Identities=27% Similarity=0.410 Sum_probs=177.8
Q ss_pred EEEEEeeeeeeCCee-ceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--cchhccc----
Q 006442 424 VVTIKNLEFGYEDRL-LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--PNYFEQN---- 496 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~-~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--~~~~~q~---- 496 (645)
||++.+++++|++.. ++++|||+++.||++||.|+||+||||+||+|++++.|++|.|+++|.+.. |..+.+.
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence 588999999999865 899999999999999999999999999999999999999999999998752 2222111
Q ss_pred -hhhcCCCCCCHHHHHHhhhccc------cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeC
Q 006442 497 -QAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (645)
Q Consensus 497 -~~~~l~~~~tv~e~v~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 569 (645)
....+...+|+.||+.+..... ...++.++.+++++ .+..++++..||-|+||||+|||||+++|+++||||
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l-~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDE 159 (245)
T COG4555 81 FGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQL-LEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDE 159 (245)
T ss_pred cCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhCh-HHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcC
Confidence 2345667899999998764321 23457788889999 578999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHH
Q 006442 570 PTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSL 631 (645)
Q Consensus 570 Pt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~ 631 (645)
||||||..++..+.+.+.+. +.+||+.||++++++.+||||++|++|+++. .|+.+...+.
T Consensus 160 P~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~-~gs~~~l~~r 223 (245)
T COG4555 160 PTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVL-EGSIEALDAR 223 (245)
T ss_pred CCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEE-cCCHHHHHHH
Confidence 99999999999999999876 4599999999999999999999999999984 6777766543
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=337.36 Aligned_cols=193 Identities=33% Similarity=0.469 Sum_probs=168.6
Q ss_pred EEEEeeeeeeCC----eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----cchhcc
Q 006442 425 VTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----PNYFEQ 495 (645)
Q Consensus 425 i~~~~v~~~y~~----~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----~~~~~q 495 (645)
|+++|+++.|++ +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 478999999987 78999999999999999999999999999999999999999999999998752 345565
Q ss_pred chhhcCCCCCCHHHHHHhhhcc------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeC
Q 006442 496 NQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (645)
Q Consensus 496 ~~~~~l~~~~tv~e~v~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 569 (645)
.. .+....|+.+|+...... ...+.+.++++.+++. +..++++.+||||||||++|||||+.+|++|||||
T Consensus 81 ~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDE 157 (220)
T cd03293 81 QD--ALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLS-GFENAYPHQLSGGMRQRVALARALAVDPDVLLLDE 157 (220)
T ss_pred cc--ccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence 43 455668999998764321 1134577899999994 66789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEe--CCeEEe
Q 006442 570 PTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVK--GSNLQD 620 (645)
Q Consensus 570 Pt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~--~g~i~~ 620 (645)
||++||+.++..+.+.|++. +.|||+||||++++..+||++++|+ +|++.+
T Consensus 158 Pt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~ 214 (220)
T cd03293 158 PFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA 214 (220)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEE
Confidence 99999999999999999754 4699999999999999999999999 799875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=348.17 Aligned_cols=207 Identities=20% Similarity=0.282 Sum_probs=170.8
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC------------ceEE
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------MKIA 164 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~------------~~i~ 164 (645)
+|+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|+
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 4889999999988889999999999999999999999999999999999999999999987743 2499
Q ss_pred EEeccCcc-CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhc
Q 006442 165 FLSQEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (645)
Q Consensus 165 ~v~Q~~~~-~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (645)
|++|++.. .+..|+.+|+...... . ........+++.+++
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l 121 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRN---------------L------------------------GVPEAEITRRVDEAL 121 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHH
Confidence 99999753 3455788887421100 0 001111233456677
Q ss_pred hhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHH
Q 006442 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLD 320 (645)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~ 320 (645)
+.+|+. +..++++.+||||||||++|||||+.+|++|||||||++||+.++.++.++|++ .|.|||++|||++++.
T Consensus 122 ~~~~l~-~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~ 200 (271)
T PRK13638 122 TLVDAQ-HFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIY 200 (271)
T ss_pred HHcCCH-hHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 788885 567888999999999999999999999999999999999999999999888753 4889999999999999
Q ss_pred hhcCeEEEEcCceeEEeccChHHH
Q 006442 321 QLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 321 ~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
.+||+++++++|++. ..|...++
T Consensus 201 ~~~d~i~~l~~G~i~-~~g~~~~~ 223 (271)
T PRK13638 201 EISDAVYVLRQGQIL-THGAPGEV 223 (271)
T ss_pred HhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999974 45665443
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=346.15 Aligned_cols=205 Identities=30% Similarity=0.395 Sum_probs=175.7
Q ss_pred CcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc------------
Q 006442 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------ 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------ 489 (645)
..+|+++|++++|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 5 ANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred cceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 35799999999999888999999999999999999999999999999999999999999999997652
Q ss_pred -cchhccchhhcCCCCCCHHHHHHhhhcc---cc----HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccC
Q 006442 490 -PNYFEQNQAEALDLDKTVLETVAEAAED---WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKP 561 (645)
Q Consensus 490 -~~~~~q~~~~~l~~~~tv~e~v~~~~~~---~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~ 561 (645)
.+|++|+ ..+.+..|+.+|+...... .. ...+..+|+.+++. +..++++.+|||||||||+|||||+.+
T Consensus 85 ~i~~v~q~--~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrv~laral~~~ 161 (269)
T PRK11831 85 RMSMLFQS--GALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLR-GAAKLMPSELSGGMARRAALARAIALE 161 (269)
T ss_pred cEEEEecc--cccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 1244443 3455678999999754211 11 23466789999995 677899999999999999999999999
Q ss_pred CCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 562 STLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 562 p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|++|||||||++||+.+++.+.++|+++ +.|||+||||++++.++||++++|++|++.. .|+.+++.+
T Consensus 162 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~~ 233 (269)
T PRK11831 162 PDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVA-HGSAQALQA 233 (269)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEE-eCCHHHHhc
Confidence 9999999999999999999999999864 4699999999999999999999999999985 466666543
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=348.88 Aligned_cols=209 Identities=23% Similarity=0.383 Sum_probs=174.9
Q ss_pred ccEEEEeEEEEeC-CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC------------ce
Q 006442 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------MK 162 (645)
Q Consensus 96 ~~i~i~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~------------~~ 162 (645)
++|+++|++++|+ +..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 3699999999996 5679999999999999999999999999999999999999999999998743 24
Q ss_pred EEEEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHh
Q 006442 163 IAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (645)
Q Consensus 163 i~~v~Q~~~-~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (645)
++|++|++. ..+..|++||+...... ..++......++.+
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~~~~~~ 124 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVN---------------------------------------LKLPEDEVRKRVDN 124 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHH---------------------------------------cCCCHHHHHHHHHH
Confidence 999999974 23567999998532100 00111122345667
Q ss_pred hchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHH
Q 006442 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRA 317 (645)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~ 317 (645)
+++.+|+. +..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++ .|.|||++|||++
T Consensus 125 ~l~~~gL~-~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~ 203 (283)
T PRK13636 125 ALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID 203 (283)
T ss_pred HHHHCCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 78888986 678899999999999999999999999999999999999999999988887742 3899999999999
Q ss_pred HHHhhcCeEEEEcCceeEEeccChHHHH
Q 006442 318 FLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 318 ~l~~~~d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
++..+||+++++++|++ .+.|..++..
T Consensus 204 ~~~~~~dri~~l~~G~i-~~~g~~~~~~ 230 (283)
T PRK13636 204 IVPLYCDNVFVMKEGRV-ILQGNPKEVF 230 (283)
T ss_pred HHHHhCCEEEEEECCEE-EEeCCHHHHh
Confidence 99999999999999998 4667765543
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-42 Score=333.77 Aligned_cols=209 Identities=28% Similarity=0.406 Sum_probs=183.7
Q ss_pred CcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc---------ch
Q 006442 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP---------NY 492 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~---------~~ 492 (645)
.+++++++++++||+-.+++||||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++.. +.
T Consensus 2 ~~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 2 TPLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred CceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 357899999999999999999999999999999999999999999999999999999999999998732 22
Q ss_pred hccchhhcCCCCCCHHHHHHhhhc------------------cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHH
Q 006442 493 FEQNQAEALDLDKTVLETVAEAAE------------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF 554 (645)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~v~~~~~------------------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~l 554 (645)
.+-.|...+++++||.||+..+.. ....+++..+|+.+|+ .+..+.+..+||+|||+|+-|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL-~~~a~~~A~~LsyG~qR~LEI 160 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGL-GELADRPAGNLSYGQQRRLEI 160 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCC-chhhcchhhcCChhHhHHHHH
Confidence 233344578899999999987632 1113468899999999 478899999999999999999
Q ss_pred HHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
||||+.+|++|+||||.+||.+.....+.+.|++. +.||++|-||++.++++||||+||+.|+++. .|++++..+
T Consensus 161 ArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA-eG~P~eV~~ 239 (250)
T COG0411 161 ARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA-EGTPEEVRN 239 (250)
T ss_pred HHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc-cCCHHHHhc
Confidence 99999999999999999999999999999998764 3699999999999999999999999999884 699998765
Q ss_pred HH
Q 006442 631 LW 632 (645)
Q Consensus 631 ~~ 632 (645)
..
T Consensus 240 dp 241 (250)
T COG0411 240 NP 241 (250)
T ss_pred CH
Confidence 43
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=342.38 Aligned_cols=210 Identities=22% Similarity=0.294 Sum_probs=173.3
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEEcCCC----------c
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN----------M 161 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p-----~~G~I~~~~~~----------~ 161 (645)
.|+++|++++|++.++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|.+ .
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRR 82 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhc
Confidence 58999999999988899999999999999999999999999999999999974 69999988742 2
Q ss_pred eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHh
Q 006442 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (645)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (645)
.|+|++|++.+++..|+.||+...+... . . ........+.+.+
T Consensus 83 ~i~~v~q~~~~~~~~tv~enl~~~~~~~-----------~-~-------------------------~~~~~~~~~~~~~ 125 (250)
T PRK14247 83 RVQMVFQIPNPIPNLSIFENVALGLKLN-----------R-L-------------------------VKSKKELQERVRW 125 (250)
T ss_pred cEEEEeccCccCCCCcHHHHHHHHHHhc-----------c-c-------------------------cCCHHHHHHHHHH
Confidence 5999999988778899999985321100 0 0 0000112344566
Q ss_pred hchhcCCCc---ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCH
Q 006442 242 LMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDR 316 (645)
Q Consensus 242 ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~ 316 (645)
+++.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||++||++
T Consensus 126 ~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~ 205 (250)
T PRK14247 126 ALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFP 205 (250)
T ss_pred HHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 777777742 346888999999999999999999999999999999999999999999988753 478999999999
Q ss_pred HHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 317 AFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 317 ~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
+++..+||+++++++|++ ...|+..++
T Consensus 206 ~~~~~~~d~i~~l~~G~i-~~~g~~~~~ 232 (250)
T PRK14247 206 QQAARISDYVAFLYKGQI-VEWGPTREV 232 (250)
T ss_pred HHHHHhcCEEEEEECCeE-EEECCHHHH
Confidence 999999999999999997 355665443
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-41 Score=359.26 Aligned_cols=205 Identities=26% Similarity=0.439 Sum_probs=179.7
Q ss_pred CCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cch
Q 006442 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNY 492 (645)
Q Consensus 421 ~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~ 492 (645)
..++|+++|+++.|+++.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++. .+|
T Consensus 11 ~~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 90 (375)
T PRK09452 11 LSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNT 90 (375)
T ss_pred CCceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 455799999999999888999999999999999999999999999999999999999999999998762 245
Q ss_pred hccchhhcCCCCCCHHHHHHhhhcc--cc----HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEE
Q 006442 493 FEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (645)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~v~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 566 (645)
++|+ ..+++.+||.+|+.++... .. ..++.++++.+++. +..++++.+|||||||||+|||||+.+|++||
T Consensus 91 vfQ~--~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~p~~LSgGq~QRVaLARaL~~~P~llL 167 (375)
T PRK09452 91 VFQS--YALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLE-EFAQRKPHQLSGGQQQRVAIARAVVNKPKVLL 167 (375)
T ss_pred EecC--cccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 5554 4678899999999876431 11 23577889999995 77899999999999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 567 LDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 567 LDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
|||||++||..++..|.+.|++. +.|+|+||||.+++..+||||++|++|++... |..+++.
T Consensus 168 LDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~-g~~~~i~ 233 (375)
T PRK09452 168 LDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQD-GTPREIY 233 (375)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-cCHHHHH
Confidence 99999999999999999988753 56999999999999999999999999999864 5655554
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=346.44 Aligned_cols=210 Identities=17% Similarity=0.377 Sum_probs=172.4
Q ss_pred ccEEEEeEEEEeCC---------eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC------
Q 006442 96 SGVKLENISKSYKG---------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------ 160 (645)
Q Consensus 96 ~~i~i~nls~~y~~---------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~------ 160 (645)
++|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 46999999999962 469999999999999999999999999999999999999999999997632
Q ss_pred ----ceEEEEeccCc--cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhc
Q 006442 161 ----MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (645)
Q Consensus 161 ----~~i~~v~Q~~~--~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (645)
..++|++|++. +.+..|+.+++....... .......
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--------------------------------------~~~~~~~ 124 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLN--------------------------------------TDLEPEQ 124 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhc--------------------------------------cCCCHHH
Confidence 25999999974 345668888874211000 0001112
Q ss_pred HHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEE
Q 006442 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMV 310 (645)
Q Consensus 235 ~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvI 310 (645)
..+.+.++++.+|+.....++.+.+|||||||||+|||||+.+|+||||||||++||+.+++++.++|++ .|.|||
T Consensus 125 ~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvi 204 (267)
T PRK15112 125 REKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYI 204 (267)
T ss_pred HHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEE
Confidence 2345667888889854567788899999999999999999999999999999999999999999888753 488999
Q ss_pred EEecCHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 311 ivsHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
++||+++++..+||+++++++|++. ..|...++
T Consensus 205 ivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 237 (267)
T PRK15112 205 YVTQHLGMMKHISDQVLVMHQGEVV-ERGSTADV 237 (267)
T ss_pred EEeCCHHHHHHhcCEEEEEECCEEE-ecCCHHHH
Confidence 9999999999999999999999984 55665544
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=334.22 Aligned_cols=193 Identities=28% Similarity=0.386 Sum_probs=169.8
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cchhccc
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQN 496 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~q~ 496 (645)
|+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEA 80 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCC
Confidence 47899999998889999999999999999999999999999999999999999999999997652 2344544
Q ss_pred hhhcCCCCCCHHHHHHhhhcc--ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCC
Q 006442 497 QAEALDLDKTVLETVAEAAED--WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574 (645)
Q Consensus 497 ~~~~l~~~~tv~e~v~~~~~~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~L 574 (645)
..+.+..|+.+|+...... ....++..+++.+++. +..++++.+|||||||||+||||++.+|++|||||||++|
T Consensus 81 --~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 157 (208)
T cd03268 81 --PGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLK-DSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGL 157 (208)
T ss_pred --CccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCH-HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccC
Confidence 3456678999999765321 2345678889999994 6678999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEe
Q 006442 575 DIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (645)
Q Consensus 575 D~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~ 620 (645)
|+.+++.+.+.|.++ +.|||+||||++++..+||++++|++|++..
T Consensus 158 D~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~ 206 (208)
T cd03268 158 DPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIE 206 (208)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence 999999999999864 4699999999999999999999999999874
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=342.72 Aligned_cols=209 Identities=25% Similarity=0.391 Sum_probs=172.6
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC---------------
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------- 160 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------------- 160 (645)
++|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 5 PLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred ceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 36999999999988889999999999999999999999999999999999999999999988754
Q ss_pred ----ceEEEEeccCc--cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhc
Q 006442 161 ----MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (645)
Q Consensus 161 ----~~i~~v~Q~~~--~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (645)
..++|++|++. +....|+.+|+...+.. .. ..+...
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~--------------~~------------------------~~~~~~ 126 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMA--------------VG------------------------ARHYGD 126 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHH--------------hc------------------------cCcHHH
Confidence 14999999974 44567888887421100 00 000011
Q ss_pred HHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEE
Q 006442 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMV 310 (645)
Q Consensus 235 ~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvI 310 (645)
...++.++++.+|+.....++.+.+||||||||++|||||+.+|+||||||||++||+.+++++.+.|+ +.|.|||
T Consensus 127 ~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii 206 (258)
T PRK11701 127 IRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVV 206 (258)
T ss_pred HHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEE
Confidence 234456778888886446788899999999999999999999999999999999999999999988764 2489999
Q ss_pred EEecCHHHHHhhcCeEEEEcCceeEEeccChHH
Q 006442 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 311 ivsHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
++||+++++..+||+|+++++|++. +.|..++
T Consensus 207 ~isH~~~~~~~~~d~i~~l~~g~i~-~~~~~~~ 238 (258)
T PRK11701 207 IVTHDLAVARLLAHRLLVMKQGRVV-ESGLTDQ 238 (258)
T ss_pred EEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHH
Confidence 9999999999999999999999984 5565444
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-41 Score=340.79 Aligned_cols=201 Identities=27% Similarity=0.398 Sum_probs=172.6
Q ss_pred EEEEeeeeeeCC-eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-------------c
Q 006442 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------P 490 (645)
Q Consensus 425 i~~~~v~~~y~~-~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------------~ 490 (645)
|+++|++++|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 478999999987 78999999999999999999999999999999999999999999999997652 1
Q ss_pred chhccchhhcCCCCCCHHHHHHhhhc--------------cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHH
Q 006442 491 NYFEQNQAEALDLDKTVLETVAEAAE--------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK 556 (645)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~v~~~~~--------------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAr 556 (645)
+|++|+ ..+++..|+.+|+..... ....+.+.++++.+++. +..++++.+|||||||||+|||
T Consensus 81 ~~~~q~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~ 157 (241)
T cd03256 81 GMIFQQ--FNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL-DKAYQRADQLSGGQQQRVAIAR 157 (241)
T ss_pred EEEccc--CcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh-hhhCCCcccCCHHHHHHHHHHH
Confidence 234443 345567899999975321 11234567889999994 6678999999999999999999
Q ss_pred HHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 557 al~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
||+.+|++|||||||++||+.++..+.+.|++. +.|||+||||++++.++||++++|++|+++. .++.+++.
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~~ 233 (241)
T cd03256 158 ALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVF-DGPPAELT 233 (241)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe-ecCHHHhh
Confidence 999999999999999999999999999999764 4699999999999999999999999999985 47777653
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=349.23 Aligned_cols=205 Identities=27% Similarity=0.342 Sum_probs=172.8
Q ss_pred EEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------------ceEE
Q 006442 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIA 164 (645)
Q Consensus 99 ~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------------~~i~ 164 (645)
.++|+++.|++.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~ 105 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKIS 105 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEE
Confidence 67799999999999999999999999999999999999999999999999999999987632 2599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
|++|++.+++..|+.||+...... . .........++.++++
T Consensus 106 ~v~q~~~~~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~ 146 (269)
T cd03294 106 MVFQSFALLPHRTVLENVAFGLEV---------------Q------------------------GVPRAEREERAAEALE 146 (269)
T ss_pred EEecCcccCCCCcHHHHHHHHHHh---------------c------------------------CCCHHHHHHHHHHHHH
Confidence 999999887789999998532100 0 0001112345667788
Q ss_pred hcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHH
Q 006442 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLD 320 (645)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~ 320 (645)
.+|+. +..++.+.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|++ .|+|||++||+++++.
T Consensus 147 ~~~l~-~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~ 225 (269)
T cd03294 147 LVGLE-GWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEAL 225 (269)
T ss_pred HcCCH-hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 88986 567889999999999999999999999999999999999999999999987642 4799999999999999
Q ss_pred hhcCeEEEEcCceeEEeccChHHH
Q 006442 321 QLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 321 ~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
.+||+++++++|++. ..|..+++
T Consensus 226 ~~~d~v~~l~~G~i~-~~g~~~~~ 248 (269)
T cd03294 226 RLGDRIAIMKDGRLV-QVGTPEEI 248 (269)
T ss_pred HhcCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999984 44554443
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=336.20 Aligned_cols=194 Identities=26% Similarity=0.401 Sum_probs=169.5
Q ss_pred EEEEEeeeeeeCCe----eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---------c
Q 006442 424 VVTIKNLEFGYEDR----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------P 490 (645)
Q Consensus 424 ~i~~~~v~~~y~~~----~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------~ 490 (645)
+|+++|++++|+++ ++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 80 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence 47899999999876 7999999999999999999999999999999999999999999999997753 2
Q ss_pred chhccchhhcCCCCCCHHHHHHhhhcc------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCe
Q 006442 491 NYFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (645)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~v~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 564 (645)
+|++|+ ..+++..|+.+|+...... .....+.++++.+++. +..++++.+||||||||++|||||+.+|++
T Consensus 81 ~~~~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~i 157 (218)
T cd03266 81 GFVSDS--TGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGME-ELLDRRVGGFSTGMRQKVAIARALVHDPPV 157 (218)
T ss_pred EEecCC--cccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHhhhhhhcCHHHHHHHHHHHHHhcCCCE
Confidence 344444 3455668999998754221 1134577899999994 678999999999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEe
Q 006442 565 LVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (645)
Q Consensus 565 LlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~ 620 (645)
|||||||++||+.+++.+.+.|.++ +.|||+||||++++..+||++++|++|++..
T Consensus 158 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~ 216 (218)
T cd03266 158 LLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216 (218)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEee
Confidence 9999999999999999999999865 4699999999999999999999999999874
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=334.77 Aligned_cols=194 Identities=27% Similarity=0.469 Sum_probs=169.2
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cchhccc
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQN 496 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~q~ 496 (645)
|+++|++++|+++++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .+|++|+
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~ 80 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQN 80 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecC
Confidence 47899999998888999999999999999999999999999999999999999999999998752 2355554
Q ss_pred hhhcCCCCCCHHHHHHhhhcc--c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCC
Q 006442 497 QAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (645)
Q Consensus 497 ~~~~l~~~~tv~e~v~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP 570 (645)
..+.+..|+.+|+...... . ..+++..+++.+++. +..++++.+||||||||++|||||+.+|++||||||
T Consensus 81 --~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP 157 (213)
T cd03301 81 --YALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE-HLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEP 157 (213)
T ss_pred --hhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3455678999999764211 1 123567889999994 677999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEee
Q 006442 571 TNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDY 621 (645)
Q Consensus 571 t~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~ 621 (645)
|++||+.++..+.+.|+++ +.|||+||||++++.++||++++|++|+++.+
T Consensus 158 t~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~ 212 (213)
T cd03301 158 LSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQI 212 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEec
Confidence 9999999999999999764 56999999999999999999999999999753
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=341.90 Aligned_cols=209 Identities=19% Similarity=0.298 Sum_probs=169.4
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEEcCCC---------
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN--------- 160 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~-----p~~G~I~~~~~~--------- 160 (645)
.+.|+++|++++|+++++|+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 4 PPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred CcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 346999999999988889999999999999999999999999999999999864 589999987632
Q ss_pred ---ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHH
Q 006442 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (645)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (645)
..++|++|++.+++ .|+.||+...+... .. .......+
T Consensus 84 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---------------~~-----------------------~~~~~~~~ 124 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFP-KSIFENVAYGLRVN---------------GV-----------------------KDKAYLAE 124 (253)
T ss_pred HHhhcEEEEecCCCCCc-CcHHHHHHHHHHHc---------------CC-----------------------CCHHHHHH
Confidence 25999999987765 69999985321100 00 00001123
Q ss_pred HHHhhchhcCCCc---ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 006442 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (645)
Q Consensus 238 ~i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIiv 312 (645)
++.++++.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .++|||++
T Consensus 125 ~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~ 204 (253)
T PRK14242 125 RVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIV 204 (253)
T ss_pred HHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 4455666666632 245778899999999999999999999999999999999999999999988753 36899999
Q ss_pred ecCHHHHHhhcCeEEEEcCceeEEeccChHH
Q 006442 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
|||++++..+||+++++++|++. ..|..++
T Consensus 205 tH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~ 234 (253)
T PRK14242 205 THNMQQAARVSDVTAFFYMGKLI-EVGPTEQ 234 (253)
T ss_pred EecHHHHHHhCCEEEEEECCEEE-EeCCHHH
Confidence 99999999999999999999984 4455443
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=347.54 Aligned_cols=206 Identities=24% Similarity=0.387 Sum_probs=172.3
Q ss_pred cEEEEeEEEEeCC---eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceE
Q 006442 97 GVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (645)
Q Consensus 97 ~i~i~nls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i 163 (645)
+|+++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 5999999999964 359999999999999999999999999999999999999999999998743 258
Q ss_pred EEEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhh
Q 006442 164 AFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (645)
Q Consensus 164 ~~v~Q~~~-~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (645)
+|++|++. .++..||.||+...... ...+.....+++.++
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~---------------------------------------~~~~~~~~~~~~~~~ 124 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLEN---------------------------------------KGIPHEEMKERVNEA 124 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHh---------------------------------------CCCCHHHHHHHHHHH
Confidence 99999984 55678999998522100 001122234456778
Q ss_pred chhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---c-CCCeEEEEecCHHH
Q 006442 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---K-QDVPMVIISHDRAF 318 (645)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~-~g~tvIivsHd~~~ 318 (645)
++.+|+. +..++.+.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|+ + .|+|||++|||+++
T Consensus 125 l~~~gL~-~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~ 203 (279)
T PRK13650 125 LELVGMQ-DFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE 203 (279)
T ss_pred HHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 8888986 57789999999999999999999999999999999999999999999988764 2 48999999999999
Q ss_pred HHhhcCeEEEEcCceeEEeccChHHH
Q 006442 319 LDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 319 l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
+. .||+|+++++|++. ..|+..++
T Consensus 204 ~~-~~dri~~l~~G~i~-~~g~~~~~ 227 (279)
T PRK13650 204 VA-LSDRVLVMKNGQVE-STSTPREL 227 (279)
T ss_pred HH-hCCEEEEEECCEEE-EECCHHHH
Confidence 94 79999999999974 45665543
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=353.09 Aligned_cols=209 Identities=22% Similarity=0.392 Sum_probs=174.9
Q ss_pred ccEEEEeEEEEeCC----------eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----
Q 006442 96 SGVKLENISKSYKG----------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----- 160 (645)
Q Consensus 96 ~~i~i~nls~~y~~----------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----- 160 (645)
+.|+++|+++.|+. ..+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 46999999999962 469999999999999999999999999999999999999999999998742
Q ss_pred --------ceEEEEeccC--ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhC
Q 006442 161 --------MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230 (645)
Q Consensus 161 --------~~i~~v~Q~~--~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (645)
.+|+|++|++ .+.+..||.+++...+.. . ...
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~---------------~-----------------------~~~ 125 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLI---------------N-----------------------TSL 125 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHH---------------c-----------------------cCC
Confidence 2599999998 466678998887422100 0 001
Q ss_pred ChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCC
Q 006442 231 NLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQD 306 (645)
Q Consensus 231 ~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g 306 (645)
...+..+++.++++.+|+.....++++.+|||||||||+|||||+.+|++||+||||++||+.++.++.++|+ +.|
T Consensus 126 ~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g 205 (327)
T PRK11308 126 SAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELG 205 (327)
T ss_pred CHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcC
Confidence 1122345677889999996557799999999999999999999999999999999999999999999988774 358
Q ss_pred CeEEEEecCHHHHHhhcCeEEEEcCceeEEeccChHH
Q 006442 307 VPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 307 ~tvIivsHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
.|||+||||+..+.++||+|++|.+|++. ..|...+
T Consensus 206 ~til~iTHdl~~~~~~adrv~vm~~G~iv-e~g~~~~ 241 (327)
T PRK11308 206 LSYVFISHDLSVVEHIADEVMVMYLGRCV-EKGTKEQ 241 (327)
T ss_pred CEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHH
Confidence 99999999999999999999999999984 4455433
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-41 Score=342.09 Aligned_cols=201 Identities=28% Similarity=0.397 Sum_probs=172.8
Q ss_pred EEEEEeeeeeeC-CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-------------
Q 006442 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~-~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------- 489 (645)
+|+++|+++.|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 478999999998 778999999999999999999999999999999999999999999999997652
Q ss_pred cchhccchhhcCCCCCCHHHHHHhhhc--------------cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHH
Q 006442 490 PNYFEQNQAEALDLDKTVLETVAEAAE--------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFC 555 (645)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~v~~~~~--------------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lA 555 (645)
.+|++|+ ..+.+..|+.+|+..... ....+++.++++.+++. ...++++.+|||||||||+||
T Consensus 81 i~~v~q~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la 157 (243)
T TIGR02315 81 IGMIFQH--YNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA-DKAYQRADQLSGGQQQRVAIA 157 (243)
T ss_pred eEEEcCC--CcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHH
Confidence 1244443 345567899999975321 11124577889999994 667899999999999999999
Q ss_pred HHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHH
Q 006442 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQV 628 (645)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~ 628 (645)
|||+.+|++|||||||++||+.++..+.+.|++. +.|||+||||++++.++||++++|++|+++. .++.+++
T Consensus 158 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 233 (243)
T TIGR02315 158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVF-DGAPSEL 233 (243)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe-cCCHHHh
Confidence 9999999999999999999999999999999764 4699999999999999999999999999984 5676654
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=340.20 Aligned_cols=201 Identities=30% Similarity=0.445 Sum_probs=172.9
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----------cchh
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PNYF 493 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~~~~ 493 (645)
|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 80 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEE
Confidence 46899999998888999999999999999999999999999999999999999999999997652 1244
Q ss_pred ccchhhcCCCCCCHHHHHHhhhccc----------------cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHH
Q 006442 494 EQNQAEALDLDKTVLETVAEAAEDW----------------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKF 557 (645)
Q Consensus 494 ~q~~~~~l~~~~tv~e~v~~~~~~~----------------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAra 557 (645)
+|+ ..+.+..|+.+|+....... ....+.++++.+++. +..++++.+|||||||||+||||
T Consensus 81 ~q~--~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~a 157 (236)
T cd03219 81 FQI--PRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA-DLADRPAGELSYGQQRRLEIARA 157 (236)
T ss_pred ecc--cccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc-chhhCChhhCCHHHHHHHHHHHH
Confidence 443 34666789999987643211 123467889999995 66789999999999999999999
Q ss_pred HccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 558 l~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
|+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++.. .++.+++.
T Consensus 158 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 231 (236)
T cd03219 158 LATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIA-EGTPDEVR 231 (236)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe-ecCHHHhc
Confidence 99999999999999999999999999999864 4699999999999999999999999999975 46766653
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=335.73 Aligned_cols=196 Identities=24% Similarity=0.366 Sum_probs=165.9
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------ceEEEEecc
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------~~i~~v~Q~ 169 (645)
|+++|++++|+++. .|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 i~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 78 (211)
T cd03298 1 VRLDKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQE 78 (211)
T ss_pred CEEEeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecc
Confidence 47899999998754 39999999999999999999999999999999999999999998742 259999999
Q ss_pred CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCC
Q 006442 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (645)
Q Consensus 170 ~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (645)
+.+++..|++||+...+..... . ....+.++.++++.+|+.
T Consensus 79 ~~~~~~~tv~enl~~~~~~~~~--------------------------------------~-~~~~~~~~~~~l~~~~l~ 119 (211)
T cd03298 79 NNLFAHLTVEQNVGLGLSPGLK--------------------------------------L-TAEDRQAIEVALARVGLA 119 (211)
T ss_pred cccCCCCcHHHHHhcccccccC--------------------------------------c-cHHHHHHHHHHHHHcCCH
Confidence 9887788999998532110000 0 001133456778888886
Q ss_pred cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCe
Q 006442 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (645)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d~ 325 (645)
+..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|++ .++|||++||+++++..+||+
T Consensus 120 -~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 198 (211)
T cd03298 120 -GLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQR 198 (211)
T ss_pred -HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCE
Confidence 567888999999999999999999999999999999999999999999988752 489999999999999999999
Q ss_pred EEEEcCceeE
Q 006442 326 IVETEMGVSR 335 (645)
Q Consensus 326 i~~l~~G~~~ 335 (645)
++++++|++.
T Consensus 199 i~~l~~G~i~ 208 (211)
T cd03298 199 VVFLDNGRIA 208 (211)
T ss_pred EEEEECCEEe
Confidence 9999999863
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=348.05 Aligned_cols=207 Identities=23% Similarity=0.324 Sum_probs=170.2
Q ss_pred cEEEEeEEEEeCC-----eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----------
Q 006442 97 GVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (645)
Q Consensus 97 ~i~i~nls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------- 160 (645)
.|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 3899999999974 369999999999999999999999999999999999999999999997642
Q ss_pred ---ceEEEEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHH
Q 006442 161 ---MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (645)
Q Consensus 161 ---~~i~~v~Q~~~-~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (645)
..|+|++|++. ..+..|+++|+...... . ........
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~ 122 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQN---------------F------------------------GVSQEEAE 122 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHH---------------c------------------------CCCHHHHH
Confidence 24899999973 23456999998521100 0 00111223
Q ss_pred HHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEe
Q 006442 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIIS 313 (645)
Q Consensus 237 ~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivs 313 (645)
+++.++++.+|+.....++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|++ .++|||++|
T Consensus 123 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 202 (280)
T PRK13649 123 ALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVT 202 (280)
T ss_pred HHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 44567778888864467888999999999999999999999999999999999999999999988753 489999999
Q ss_pred cCHHHHHhhcCeEEEEcCceeEEeccChHH
Q 006442 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
|+++++..+||+++++++|++. ..|...+
T Consensus 203 H~~~~~~~~~d~i~~l~~G~i~-~~g~~~~ 231 (280)
T PRK13649 203 HLMDDVANYADFVYVLEKGKLV-LSGKPKD 231 (280)
T ss_pred ccHHHHHHhCCEEEEEECCEEE-EeCCHHH
Confidence 9999999999999999999974 4465443
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=342.51 Aligned_cols=207 Identities=22% Similarity=0.293 Sum_probs=169.7
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEEcCCC----------
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN---------- 160 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p-----~~G~I~~~~~~---------- 160 (645)
++|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|..
T Consensus 11 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 90 (258)
T PRK14268 11 PQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVE 90 (258)
T ss_pred eeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHH
Confidence 469999999999888899999999999999999999999999999999999975 79999987632
Q ss_pred --ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHH
Q 006442 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (645)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (645)
..++|++|++.++. .|+.||+...... . .......+++
T Consensus 91 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~---------------~------------------------~~~~~~~~~~ 130 (258)
T PRK14268 91 LRKNVGMVFQKPNPFP-MSIYDNVAYGPRI---------------H------------------------GANKKDLDGV 130 (258)
T ss_pred HhhhEEEEecCCccCc-ccHHHHHHHHHHH---------------c------------------------CCCHHHHHHH
Confidence 24999999988766 8999998532100 0 0000112234
Q ss_pred HHhhchhcCCC---cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 006442 239 VSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (645)
Q Consensus 239 i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivs 313 (645)
+.++++.+|+. ....++++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|++ .++|||++|
T Consensus 131 ~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivs 210 (258)
T PRK14268 131 VENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVT 210 (258)
T ss_pred HHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEE
Confidence 55566666663 2346788999999999999999999999999999999999999999999988753 378999999
Q ss_pred cCHHHHHhhcCeEEEEcCceeEEeccChHH
Q 006442 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
||++++.++||+|+++++|++. +.|...+
T Consensus 211 H~~~~~~~~~d~i~~l~~G~i~-~~~~~~~ 239 (258)
T PRK14268 211 HNMQQAARISDYTGFFLMGELI-EFGQTRQ 239 (258)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EeCCHHH
Confidence 9999999999999999999974 4455443
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-41 Score=343.26 Aligned_cols=221 Identities=20% Similarity=0.372 Sum_probs=175.4
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----------ceEEE
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAF 165 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-----------~~i~~ 165 (645)
+|+++|++++|+++++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..++|
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 84 (255)
T PRK11300 5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVR 84 (255)
T ss_pred eEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEE
Confidence 5999999999998889999999999999999999999999999999999999999999998742 24899
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchh
Q 006442 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (645)
Q Consensus 166 v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (645)
++|++.+++..|+.||+......... ......+... ... .-........+.++++.
T Consensus 85 ~~q~~~~~~~~tv~enl~~~~~~~~~-----~~~~~~~~~~----~~~---------------~~~~~~~~~~~~~~l~~ 140 (255)
T PRK11300 85 TFQHVRLFREMTVIENLLVAQHQQLK-----TGLFSGLLKT----PAF---------------RRAESEALDRAATWLER 140 (255)
T ss_pred eccCcccCCCCcHHHHHHHhhhcccc-----chhhhhhccc----ccc---------------ccchhHHHHHHHHHHHh
Confidence 99999888889999998632110000 0000000000 000 00000122346677888
Q ss_pred cCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---c-CCCeEEEEecCHHHHHh
Q 006442 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---K-QDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~-~g~tvIivsHd~~~l~~ 321 (645)
+|+. +..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|. + .|+|||++||+++++..
T Consensus 141 ~gl~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~ 219 (255)
T PRK11300 141 VGLL-EHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMG 219 (255)
T ss_pred CChh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHH
Confidence 8885 56789999999999999999999999999999999999999999999988874 2 38999999999999999
Q ss_pred hcCeEEEEcCceeEEeccChHH
Q 006442 322 LCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 322 ~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
+||+++++++|++. +.|..++
T Consensus 220 ~~d~i~~l~~g~i~-~~~~~~~ 240 (255)
T PRK11300 220 ISDRIYVVNQGTPL-ANGTPEE 240 (255)
T ss_pred hCCEEEEEECCeEE-ecCCHHH
Confidence 99999999999984 5565443
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-41 Score=342.81 Aligned_cols=210 Identities=26% Similarity=0.345 Sum_probs=173.8
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceEEEE
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i~~v 166 (645)
+|+++|++++|+++++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..++|+
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL 81 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence 4899999999998889999999999999999999999999999999999999999999998742 249999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhc
Q 006442 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (645)
Q Consensus 167 ~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (645)
+|++.+++..|+.||+......... .+. ........++.++++.+
T Consensus 82 ~q~~~~~~~~tv~~~i~~~~~~~~~----------~~~-------------------------~~~~~~~~~~~~~l~~~ 126 (255)
T PRK11231 82 PQHHLTPEGITVRELVAYGRSPWLS----------LWG-------------------------RLSAEDNARVNQAMEQT 126 (255)
T ss_pred cccCCCCCCccHHHHHHhccchhhh----------hcc-------------------------CCCHHHHHHHHHHHHHc
Confidence 9998877778999998532110000 000 00011233456677888
Q ss_pred CCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhc
Q 006442 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLC 323 (645)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~ 323 (645)
|+. +..++.+.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|+ +.++|||++||+++++.++|
T Consensus 127 ~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~ 205 (255)
T PRK11231 127 RIN-HLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYC 205 (255)
T ss_pred CCH-HHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhc
Confidence 885 56788899999999999999999999999999999999999999999988874 35899999999999999999
Q ss_pred CeEEEEcCceeEEeccChHH
Q 006442 324 TKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 324 d~i~~l~~G~~~~~~g~~~~ 343 (645)
|+++++++|++. ..|..++
T Consensus 206 d~i~~l~~G~i~-~~~~~~~ 224 (255)
T PRK11231 206 DHLVVLANGHVM-AQGTPEE 224 (255)
T ss_pred CEEEEEECCeEE-EEcCHHH
Confidence 999999999874 4555444
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=341.37 Aligned_cols=210 Identities=21% Similarity=0.256 Sum_probs=170.9
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEEcCCC----------
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN---------- 160 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p-----~~G~I~~~~~~---------- 160 (645)
.+|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 3 FAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred ceEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 369999999999888899999999999999999999999999999999999987 49999987642
Q ss_pred --ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHH
Q 006442 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (645)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (645)
..++|++|++.+++..|+.||+...... .... ........+
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~---------------~~~~----------------------~~~~~~~~~ 125 (253)
T PRK14267 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKL---------------NGLV----------------------KSKKELDER 125 (253)
T ss_pred HhhceeEEecCCccCCCCcHHHHHHHHHHh---------------cCcc----------------------CCHHHHHHH
Confidence 2599999999887788999998532110 0000 000112233
Q ss_pred HHhhchhcCCCc---ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 006442 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (645)
Q Consensus 239 i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivs 313 (645)
+.++++.+|+.. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .++|||++|
T Consensus 126 ~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~s 205 (253)
T PRK14267 126 VEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVT 205 (253)
T ss_pred HHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEE
Confidence 455666666632 346778899999999999999999999999999999999999999999988753 368999999
Q ss_pred cCHHHHHhhcCeEEEEcCceeEEeccChHH
Q 006442 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
|+++++..+||+|+++++|++. ..|...+
T Consensus 206 H~~~~~~~~~d~i~~l~~G~i~-~~~~~~~ 234 (253)
T PRK14267 206 HSPAQAARVSDYVAFLYLGKLI-EVGPTRK 234 (253)
T ss_pred CCHHHHHhhCCEEEEEECCEEE-EeCCHHH
Confidence 9999999999999999999984 4565444
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=361.16 Aligned_cols=203 Identities=25% Similarity=0.438 Sum_probs=177.9
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------cch
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNY 492 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~ 492 (645)
++|+++|++++|+++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++. .+|
T Consensus 2 ~~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 3699999999999999999999999999999999999999999999999999999999999998753 234
Q ss_pred hccchhhcCCCCCCHHHHHHhhhc----------cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCC
Q 006442 493 FEQNQAEALDLDKTVLETVAEAAE----------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS 562 (645)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~v~~~~~----------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p 562 (645)
+.|+ ..+.+.+|+.+|+..... ....+.+.++++.+++. +..++++.+|||||||||+|||||+++|
T Consensus 82 v~q~--~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~-~~~~~~~~~LSgGerQRv~IArAL~~~P 158 (402)
T PRK09536 82 VPQD--TSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA-QFADRPVTSLSGGERQRVLLARALAQAT 158 (402)
T ss_pred EccC--CCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 5443 456678999999976431 11234578899999994 7789999999999999999999999999
Q ss_pred CeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 563 TLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 563 ~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
++|||||||+|||+.++..+.++|+++ +.|||++|||++++.++|||+++|++|+++. .|+.++++
T Consensus 159 ~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~-~G~~~ev~ 227 (402)
T PRK09536 159 PVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRA-AGPPADVL 227 (402)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-ecCHHHHh
Confidence 999999999999999999999998865 4599999999999999999999999999985 57777653
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-41 Score=339.40 Aligned_cols=203 Identities=25% Similarity=0.384 Sum_probs=175.3
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc------------c
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP------------N 491 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~------------~ 491 (645)
+|+++|++++|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. +
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 4789999999988889999999999999999999999999999999999999999999999987531 2
Q ss_pred hhccchhhcCCCCCCHHHHHHhhhc---c----ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCe
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAAE---D----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~~---~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 564 (645)
|++|+ ..+.+..|+.+|+..... . .....+.++++.+|+. +..++++..||||||||++|||||+.+|++
T Consensus 81 ~~~q~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~la~al~~~p~l 157 (240)
T PRK09493 81 MVFQQ--FYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLA-ERAHHYPSELSGGQQQRVAIARALAVKPKL 157 (240)
T ss_pred EEecc--cccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCh-HHHhcChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 44443 345567899999976421 1 1123567899999994 667899999999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 565 LVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 565 LlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|++|+++. .|+.+++.+
T Consensus 158 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~~ 225 (240)
T PRK09493 158 MLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAE-DGDPQVLIK 225 (240)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe-eCCHHHHhc
Confidence 9999999999999999999999765 4699999999999999999999999999985 577777654
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-41 Score=356.58 Aligned_cols=202 Identities=29% Similarity=0.433 Sum_probs=177.4
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cchhcc
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~q 495 (645)
+|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q 81 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQ 81 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEec
Confidence 489999999999888999999999999999999999999999999999999999999999998762 245555
Q ss_pred chhhcCCCCCCHHHHHHhhhcc------c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeE
Q 006442 496 NQAEALDLDKTVLETVAEAAED------W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (645)
Q Consensus 496 ~~~~~l~~~~tv~e~v~~~~~~------~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 565 (645)
+ ..+++.+|+.+|+.+.... . ...++.++|+.+++. +..++++.+|||||||||+|||||+.+|++|
T Consensus 82 ~--~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGq~QRvalArAL~~~P~ll 158 (353)
T PRK10851 82 H--YALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLA-HLADRYPAQLSGGQKQRVALARALAVEPQIL 158 (353)
T ss_pred C--cccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 4 4677889999999875321 1 124577899999994 6789999999999999999999999999999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 566 VLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 566 lLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
||||||++||+.++..+.+.|++. +.|+|+||||++++..+||||++|++|++.. .|+.+++.
T Consensus 159 LLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~-~g~~~~i~ 225 (353)
T PRK10851 159 LLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQ-AGTPDQVW 225 (353)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 999999999999999999988754 5699999999999999999999999999985 46666554
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=336.55 Aligned_cols=190 Identities=32% Similarity=0.497 Sum_probs=164.0
Q ss_pred EEEEeeeeeeCC----eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----------
Q 006442 425 VTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------- 489 (645)
Q Consensus 425 i~~~~v~~~y~~----~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------- 489 (645)
|+++|+++.|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 478999999986 78999999999999999999999999999999999999999999999997652
Q ss_pred ---cchhccchhhcCCCCCCHHHHHHhhhcc--c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHcc
Q 006442 490 ---PNYFEQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560 (645)
Q Consensus 490 ---~~~~~q~~~~~l~~~~tv~e~v~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~ 560 (645)
.+|++|+ ..+++..|+.+|+...... . ..+.+.++++.+|+. +..++++.+|||||||||+|||||+.
T Consensus 81 ~~~i~~~~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~ 157 (218)
T cd03255 81 RRHIGFVFQS--FNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLG-DRLNHYPSELSGGQQQRVAIARALAN 157 (218)
T ss_pred hhcEEEEeec--cccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-hhhhcChhhcCHHHHHHHHHHHHHcc
Confidence 1233333 3455678999998764321 1 124577899999995 56789999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeE
Q 006442 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNL 618 (645)
Q Consensus 561 ~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i 618 (645)
+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++. +||++++|++|++
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 158 DPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 99999999999999999999999999864 459999999999997 8999999999874
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=358.79 Aligned_cols=202 Identities=29% Similarity=0.450 Sum_probs=176.5
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cchhcc
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~q 495 (645)
.|+++|++++|+++.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++. .+|++|
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q 82 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQ 82 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeC
Confidence 489999999999888999999999999999999999999999999999999999999999998752 245555
Q ss_pred chhhcCCCCCCHHHHHHhhhcc--c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeC
Q 006442 496 NQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (645)
Q Consensus 496 ~~~~~l~~~~tv~e~v~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 569 (645)
+ ..+++.+|+.+|+.+.... . ...++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||
T Consensus 83 ~--~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDE 159 (369)
T PRK11000 83 S--YALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE 159 (369)
T ss_pred C--cccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 4 3567789999999875321 1 124578899999994 67899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 570 PTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 570 Pt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
||++||+.+++.+.+.|+++ +.|||+||||++++..+||++++|++|++... |+.+++.
T Consensus 160 Pts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~-g~~~~i~ 222 (369)
T PRK11000 160 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV-GKPLELY 222 (369)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-cCHHHHH
Confidence 99999999999999888754 56999999999999999999999999999854 6655543
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-41 Score=348.25 Aligned_cols=205 Identities=25% Similarity=0.360 Sum_probs=174.9
Q ss_pred EEEEEeeeeeeCC-----eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---------
Q 006442 424 VVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~-----~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------- 489 (645)
+|+++|+++.|+. +.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 4899999999973 25999999999999999999999999999999999999999999999998752
Q ss_pred -----cchhccchhhcCCCCCCHHHHHHhhhccc------cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHH
Q 006442 490 -----PNYFEQNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (645)
Q Consensus 490 -----~~~~~q~~~~~l~~~~tv~e~v~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral 558 (645)
.+|+.|+....+ +..|+.+|+.+..... ...++.++++.+++..+..++++..||||||||++|||||
T Consensus 81 ~~~~~ig~v~q~~~~~l-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL 159 (288)
T PRK13643 81 PVRKKVGVVFQFPESQL-FEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL 159 (288)
T ss_pred HHHhhEEEEecCcchhc-ccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence 245566543233 3469999998754321 1234678899999954567899999999999999999999
Q ss_pred ccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||||++|++|+++. .|+.++++.
T Consensus 160 ~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~-~g~~~~~~~ 233 (288)
T PRK13643 160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIIS-CGTPSDVFQ 233 (288)
T ss_pred HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ECCHHHHHc
Confidence 9999999999999999999999999998764 4699999999999999999999999999985 577777653
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=341.81 Aligned_cols=195 Identities=27% Similarity=0.397 Sum_probs=170.3
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----cchhccchh
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----PNYFEQNQA 498 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----~~~~~q~~~ 498 (645)
+|+++|+++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|.
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~-- 78 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQN-- 78 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCC--
Confidence 478999999998888999999999999999999999999999999999999999999999998753 3455554
Q ss_pred hcCCCCCCHHHHHHhhhcc--c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCC
Q 006442 499 EALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572 (645)
Q Consensus 499 ~~l~~~~tv~e~v~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~ 572 (645)
..+.+..|+.+|+...... . ...++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~ 157 (255)
T PRK11248 79 EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLE-GAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFG 157 (255)
T ss_pred CccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 3455678999999764211 1 124578899999995 66789999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEe--CCeEEee
Q 006442 573 HLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVK--GSNLQDY 621 (645)
Q Consensus 573 ~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~--~g~i~~~ 621 (645)
+||+.++..+.+.|+++ +.|||+||||++++..+||++++|+ +|+++..
T Consensus 158 ~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~ 212 (255)
T PRK11248 158 ALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVER 212 (255)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEE
Confidence 99999999999999864 4699999999999999999999998 5998753
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-41 Score=338.85 Aligned_cols=205 Identities=23% Similarity=0.329 Sum_probs=167.1
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----------ceEE
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-----------~~i~ 164 (645)
++|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.. ..++
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred cEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 36999999999988889999999999999999999999999999999999999999999988742 2499
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
|++|++.+++..||.+|+....... .. ......+.++++
T Consensus 84 ~~~q~~~~~~~~tv~~~l~~~~~~~-~~----------------------------------------~~~~~~~~~~l~ 122 (237)
T PRK11614 84 IVPEGRRVFSRMTVEENLAMGGFFA-ER----------------------------------------DQFQERIKWVYE 122 (237)
T ss_pred EeccCcccCCCCcHHHHHHHhhhcc-Ch----------------------------------------hHHHHHHHHHHH
Confidence 9999998877789999985321000 00 000111222233
Q ss_pred hc-CCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHH
Q 006442 245 EL-GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (645)
Q Consensus 245 ~l-gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~ 320 (645)
.+ ++. +..++++.+||||||||++|||||+.+|+||||||||++||+.+++.+.++|+ +.|.|||++|||++++.
T Consensus 123 ~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 201 (237)
T PRK11614 123 LFPRLH-ERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQAL 201 (237)
T ss_pred HHHHHH-HHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHH
Confidence 33 222 34466789999999999999999999999999999999999999999988764 35899999999999999
Q ss_pred hhcCeEEEEcCceeEEeccChHH
Q 006442 321 QLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 321 ~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
++||+++++++|++ .+.|+.++
T Consensus 202 ~~~d~i~~l~~G~i-~~~~~~~~ 223 (237)
T PRK11614 202 KLADRGYVLENGHV-VLEDTGDA 223 (237)
T ss_pred hhCCEEEEEeCCEE-EeeCCHHH
Confidence 99999999999997 45566544
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=336.42 Aligned_cols=192 Identities=29% Similarity=0.457 Sum_probs=164.8
Q ss_pred EEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceec-----ccchhccchhhc
Q 006442 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----LPNYFEQNQAEA 500 (645)
Q Consensus 426 ~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~-----~~~~~~q~~~~~ 500 (645)
+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ ..+|++|+....
T Consensus 1 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~ 80 (213)
T cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSID 80 (213)
T ss_pred CcccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccc
Confidence 368999999888899999999999999999999999999999999999999999999999764 235666653221
Q ss_pred CCCCCCHHHHHHhhhcc----------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCC
Q 006442 501 LDLDKTVLETVAEAAED----------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (645)
Q Consensus 501 l~~~~tv~e~v~~~~~~----------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP 570 (645)
..+..|+.+|+...... ...+.+..+++.+++. +..++++.+|||||||||+|||||+.+|++||||||
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 159 (213)
T cd03235 81 RDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLS-ELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEP 159 (213)
T ss_pred cCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCH-HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 12457999999764321 1124577899999994 677899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeE
Q 006442 571 TNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNL 618 (645)
Q Consensus 571 t~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i 618 (645)
|++||+.++..+.+.|.++ +.|||+||||++++.++||++++|++|.+
T Consensus 160 t~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~~~ 210 (213)
T cd03235 160 FAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCcEe
Confidence 9999999999999999865 36999999999999999999999988644
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=342.49 Aligned_cols=209 Identities=28% Similarity=0.390 Sum_probs=174.1
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceEEEEe
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFLS 167 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i~~v~ 167 (645)
|+++|++++|++..+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVE 81 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEec
Confidence 789999999998899999999999999999999999999999999999999999999998742 2499999
Q ss_pred ccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcC
Q 006442 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (645)
Q Consensus 168 Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg 247 (645)
|++.+++..||.||+......... .. ........+++.++++.+|
T Consensus 82 q~~~~~~~~tv~e~l~~~~~~~~~----------~~-------------------------~~~~~~~~~~~~~~l~~~~ 126 (256)
T TIGR03873 82 QDSDTAVPLTVRDVVALGRIPHRS----------LW-------------------------AGDSPHDAAVVDRALARTE 126 (256)
T ss_pred ccCccCCCCCHHHHHHhcchhhhh----------hc-------------------------cCCCHHHHHHHHHHHHHcC
Confidence 998777788999998532110000 00 0001112235667788888
Q ss_pred CCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcC
Q 006442 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCT 324 (645)
Q Consensus 248 l~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~~d 324 (645)
+. +..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++ .+.|||++||+++++..+||
T Consensus 127 l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d 205 (256)
T TIGR03873 127 LS-HLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCD 205 (256)
T ss_pred cH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 85 677889999999999999999999999999999999999999999999887753 48899999999999999999
Q ss_pred eEEEEcCceeEEeccChHH
Q 006442 325 KIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 325 ~i~~l~~G~~~~~~g~~~~ 343 (645)
+|+++++|++. ..|..++
T Consensus 206 ~i~~l~~G~i~-~~g~~~~ 223 (256)
T TIGR03873 206 HVVVLDGGRVV-AAGPPRE 223 (256)
T ss_pred EEEEEeCCCEE-EecCHHH
Confidence 99999999874 5565544
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=345.26 Aligned_cols=210 Identities=26% Similarity=0.365 Sum_probs=173.4
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceEEE
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i~~ 165 (645)
.+|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 10 ~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 89 (265)
T PRK10575 10 TTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAY 89 (265)
T ss_pred ceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEE
Confidence 46999999999988889999999999999999999999999999999999999999999998743 25999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchh
Q 006442 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (645)
Q Consensus 166 v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (645)
++|++.+++..|+.+|+........ .... ......+.++.++++.
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~----------~~~~-------------------------~~~~~~~~~~~~~l~~ 134 (265)
T PRK10575 90 LPQQLPAAEGMTVRELVAIGRYPWH----------GALG-------------------------RFGAADREKVEEAISL 134 (265)
T ss_pred eccCCCCCCCccHHHHHHhCccccc----------cccc-------------------------CCCHHHHHHHHHHHHH
Confidence 9999877778899999853210000 0000 0001123445677888
Q ss_pred cCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHh
Q 006442 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~ 321 (645)
+|+. +..++++.+|||||||||+|||||+.+|+||||||||++||+.+++.+.++|++ .|.|||++||+++++.+
T Consensus 135 ~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~ 213 (265)
T PRK10575 135 VGLK-PLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAAR 213 (265)
T ss_pred cCCH-HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 8885 567888999999999999999999999999999999999999999988887742 48999999999999999
Q ss_pred hcCeEEEEcCceeEEeccChH
Q 006442 322 LCTKIVETEMGVSRTYEGNYS 342 (645)
Q Consensus 322 ~~d~i~~l~~G~~~~~~g~~~ 342 (645)
+||+|+++++|++. ..|...
T Consensus 214 ~~d~i~~l~~G~i~-~~~~~~ 233 (265)
T PRK10575 214 YCDYLVALRGGEMI-AQGTPA 233 (265)
T ss_pred hCCEEEEEECCeEE-EecCHH
Confidence 99999999999973 445543
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=372.67 Aligned_cols=206 Identities=40% Similarity=0.658 Sum_probs=183.2
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCC
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~ 502 (645)
.+|+++|+++.|+++++|+++||+|.+|+++||||+||||||||||+|+|...|++|+|.+.+. +..+|+.|++ .+.
T Consensus 2 ~~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-~~v~~l~Q~~--~~~ 78 (530)
T COG0488 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-LRVGYLSQEP--PLD 78 (530)
T ss_pred ceEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-ceEEEeCCCC--CcC
Confidence 3699999999999999999999999999999999999999999999999999999999998753 5678888764 345
Q ss_pred CCCCHHHHHHhhhcc-----------------------------------cc-HHHHHHHHhhcCCChhhhccCcCcCCH
Q 006442 503 LDKTVLETVAEAAED-----------------------------------WR-IDDIKGLLGRCNFKADMLDRKVSLLSG 546 (645)
Q Consensus 503 ~~~tv~e~v~~~~~~-----------------------------------~~-~~~~~~~L~~~~l~~~~~~~~~~~LSg 546 (645)
...||.+.+..+... |. ..++..+|..+|+... ++++++|||
T Consensus 79 ~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~--~~~~~~LSG 156 (530)
T COG0488 79 PEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DRPVSSLSG 156 (530)
T ss_pred CCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc--cCchhhcCH
Confidence 567888887654210 11 1356778888999643 899999999
Q ss_pred hHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChh
Q 006442 547 GEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626 (645)
Q Consensus 547 Gqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~ 626 (645)
|||.||+||+||+.+|++|||||||||||.++..+|.+.|.++.+|||+||||.+|+.++|++|+.++.|++..|.|+|+
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~ 236 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYS 236 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCCHH
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 006442 627 QVQSLWF 633 (645)
Q Consensus 627 ~~~~~~~ 633 (645)
.|.+...
T Consensus 237 ~~~~~r~ 243 (530)
T COG0488 237 SYLEQKA 243 (530)
T ss_pred HHHHHHH
Confidence 9986554
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=356.20 Aligned_cols=203 Identities=27% Similarity=0.398 Sum_probs=177.7
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCe--eEEEECceecc--------cchh
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG--GEVLLGEHNVL--------PNYF 493 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~--G~i~~~g~~~~--------~~~~ 493 (645)
.|+++|++++|+++.+|+++||+|++||+++|+|||||||||||++|+|+++|++ |+|.++|.++. .+|+
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~v 84 (362)
T TIGR03258 5 GIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALL 84 (362)
T ss_pred EEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEE
Confidence 4899999999998889999999999999999999999999999999999999999 99999998752 2455
Q ss_pred ccchhhcCCCCCCHHHHHHhhhccc--c----HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEe
Q 006442 494 EQNQAEALDLDKTVLETVAEAAEDW--R----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567 (645)
Q Consensus 494 ~q~~~~~l~~~~tv~e~v~~~~~~~--~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 567 (645)
.|+ ..+++.+||.+|+.++.... . ..++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||
T Consensus 85 fQ~--~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLL 161 (362)
T TIGR03258 85 FQN--YALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLG-DAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLL 161 (362)
T ss_pred ECC--cccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 554 45778899999998764311 1 23577899999995 678999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc-----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 568 DEPTNHLDIPSKEMLEEAISEY-----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 568 DEPt~~LD~~s~~~l~~~l~~~-----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
||||++||+.++..|.+.|++. +.|+|+||||++++..+||||++|++|++.. .|+.+++..
T Consensus 162 DEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~-~g~~~~~~~ 228 (362)
T TIGR03258 162 DEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAA-HGEPQALYD 228 (362)
T ss_pred cCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHHh
Confidence 9999999999999999988643 4699999999999999999999999999985 466666543
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=332.45 Aligned_cols=193 Identities=25% Similarity=0.436 Sum_probs=168.8
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc------cchhccchh
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------PNYFEQNQA 498 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------~~~~~q~~~ 498 (645)
|+++|+++.|+++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~-- 78 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEE-- 78 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccC--
Confidence 47899999998888999999999999999999999999999999999999999999999997652 2455554
Q ss_pred hcCCCCCCHHHHHHhhhcc------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCC
Q 006442 499 EALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572 (645)
Q Consensus 499 ~~l~~~~tv~e~v~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~ 572 (645)
..+.+..|+.+|+...... ...+.+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~ 157 (210)
T cd03269 79 RGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELS-EYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFS 157 (210)
T ss_pred CcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCh-HHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 3455678999998764321 1134577889999995 66789999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEe
Q 006442 573 HLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (645)
Q Consensus 573 ~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~ 620 (645)
+||+.++..+.+.|+++ +.|||++|||++++.++||++++|++|++..
T Consensus 158 ~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 158 GLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence 99999999999999865 4699999999999999999999999999874
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=347.79 Aligned_cols=203 Identities=26% Similarity=0.368 Sum_probs=173.8
Q ss_pred EEEEeeeeeeCC-----eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------
Q 006442 425 VTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (645)
Q Consensus 425 i~~~~v~~~y~~-----~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (645)
|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 899999999974 46999999999999999999999999999999999999999999999998652
Q ss_pred ----cchhccchhhcCCCCCCHHHHHHhhhcc--cc----HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHc
Q 006442 490 ----PNYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV 559 (645)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~v~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~ 559 (645)
.+|++|+....+ +..|+.+|+.+.... .. ...+.++++.+++..+..++++.+|||||||||+|||||+
T Consensus 83 ~~~~ig~v~q~~~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~ 161 (290)
T PRK13634 83 LRKKVGIVFQFPEHQL-FEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA 161 (290)
T ss_pred HHhhEEEEeeCchhhh-hhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 245666533233 357999999865321 11 2356788999999646678999999999999999999999
Q ss_pred cCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 560 ~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||||++|++|+++. .|+.++++
T Consensus 162 ~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~-~g~~~~~~ 234 (290)
T PRK13634 162 MEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFL-QGTPREIF 234 (290)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHh
Confidence 999999999999999999999999998764 5699999999999999999999999999985 46666654
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=348.26 Aligned_cols=207 Identities=21% Similarity=0.284 Sum_probs=169.5
Q ss_pred cEEEEeEEEEeCCe-----eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----------
Q 006442 97 GVKLENISKSYKGV-----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (645)
Q Consensus 97 ~i~i~nls~~y~~~-----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------- 160 (645)
.|+++|++++|+++ ++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|..
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 85 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEV 85 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccH
Confidence 49999999999764 49999999999999999999999999999999999999999999987632
Q ss_pred ----ceEEEEeccCcc-CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcH
Q 006442 161 ----MKIAFLSQEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (645)
Q Consensus 161 ----~~i~~v~Q~~~~-~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (645)
..|+|++|++.. .+..|+.||+...... . .......
T Consensus 86 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~---------------~------------------------~~~~~~~ 126 (289)
T PRK13645 86 KRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVN---------------L------------------------GENKQEA 126 (289)
T ss_pred HHHhccEEEEEeCcchhhhhhHHHHHHHHHHHH---------------c------------------------CCCHHHH
Confidence 258999999742 2346999998521100 0 0001112
Q ss_pred HHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEE
Q 006442 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVI 311 (645)
Q Consensus 236 ~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIi 311 (645)
.+++.++++.++++....++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|++ .++|||+
T Consensus 127 ~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii 206 (289)
T PRK13645 127 YKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIM 206 (289)
T ss_pred HHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 234566778888854567889999999999999999999999999999999999999999999887642 4899999
Q ss_pred EecCHHHHHhhcCeEEEEcCceeEEeccChHH
Q 006442 312 ISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 312 vsHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
|||+++++.++||+|+++++|++. ..|...+
T Consensus 207 isH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~ 237 (289)
T PRK13645 207 VTHNMDQVLRIADEVIVMHEGKVI-SIGSPFE 237 (289)
T ss_pred EecCHHHHHHhCCEEEEEECCEEE-EeCCHHH
Confidence 999999999999999999999974 4455444
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=338.03 Aligned_cols=202 Identities=23% Similarity=0.333 Sum_probs=165.7
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----------ceEEEE
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFL 166 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-----------~~i~~v 166 (645)
|+++|+++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++.. ..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYV 80 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEe
Confidence 478999999998889999999999999999999999999999999999999999999987632 259999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhc
Q 006442 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (645)
Q Consensus 167 ~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (645)
+|++.+++..|+.+|+...+... .. ...+.+.++++.+
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~-~~-----------------------------------------~~~~~~~~~l~~~ 118 (230)
T TIGR03410 81 PQGREIFPRLTVEENLLTGLAAL-PR-----------------------------------------RSRKIPDEIYELF 118 (230)
T ss_pred ccCCcccCCCcHHHHHHHHHHhc-Cc-----------------------------------------chHHHHHHHHHHH
Confidence 99998877789999985322100 00 0001112333333
Q ss_pred CCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhh
Q 006442 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQL 322 (645)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~ 322 (645)
+......++++.+||||||||++|||||+.+|++|||||||++||+.++.++.++|.+ .++|||++||+++++..+
T Consensus 119 ~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~ 198 (230)
T TIGR03410 119 PVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFAREL 198 (230)
T ss_pred HhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHh
Confidence 3212456788999999999999999999999999999999999999999999988753 479999999999999999
Q ss_pred cCeEEEEcCceeEEeccChH
Q 006442 323 CTKIVETEMGVSRTYEGNYS 342 (645)
Q Consensus 323 ~d~i~~l~~G~~~~~~g~~~ 342 (645)
||+++++++|++. ..|+.+
T Consensus 199 ~d~v~~l~~g~i~-~~~~~~ 217 (230)
T TIGR03410 199 ADRYYVMERGRVV-ASGAGD 217 (230)
T ss_pred CCEEEEEECCEEE-EECCHH
Confidence 9999999999884 455543
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=345.33 Aligned_cols=208 Identities=22% Similarity=0.371 Sum_probs=173.9
Q ss_pred cEEEEeEEEEeC-CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceEEE
Q 006442 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (645)
Q Consensus 97 ~i~i~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i~~ 165 (645)
+|+++|++++|+ ...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.. ..++|
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 589999999996 4569999999999999999999999999999999999999999999998742 24999
Q ss_pred EeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 166 LSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 166 v~Q~~~-~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
++|++. .++..||.+|+...... ..++.....+++.++++
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~ 123 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPIN---------------------------------------LGLDEETVAHRVSSALH 123 (277)
T ss_pred EecCcccccccccHHHHHHhHHHH---------------------------------------cCCCHHHHHHHHHHHHH
Confidence 999974 33567999998521100 00111122345667888
Q ss_pred hcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHH
Q 006442 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLD 320 (645)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~ 320 (645)
.+|+. +..++.+.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++ .|.|||++||+++++.
T Consensus 124 ~~~l~-~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~ 202 (277)
T PRK13652 124 MLGLE-ELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVP 202 (277)
T ss_pred HCCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 88986 678889999999999999999999999999999999999999999999887742 4899999999999999
Q ss_pred hhcCeEEEEcCceeEEeccChHHHH
Q 006442 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 321 ~~~d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
++||+|+++++|++ .+.|+.+++.
T Consensus 203 ~~~drv~~l~~G~i-~~~g~~~~~~ 226 (277)
T PRK13652 203 EMADYIYVMDKGRI-VAYGTVEEIF 226 (277)
T ss_pred HhCCEEEEEECCeE-EEECCHHHHh
Confidence 99999999999997 4567766543
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=355.03 Aligned_cols=202 Identities=29% Similarity=0.408 Sum_probs=173.8
Q ss_pred EEEEEeeeeeeC----CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------
Q 006442 424 VVTIKNLEFGYE----DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~----~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (645)
+|+++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 489999999997 367999999999999999999999999999999999999999999999998753
Q ss_pred ---cchhccchhhcCCCCCCHHHHHHhhhcc--cc----HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHcc
Q 006442 490 ---PNYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560 (645)
Q Consensus 490 ---~~~~~q~~~~~l~~~~tv~e~v~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~ 560 (645)
.+|++|+ ..+++..|+.+|+...... .. .+++.++++.+|+. +..++++.+|||||||||+|||||+.
T Consensus 81 ~~~ig~v~q~--~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qRv~lAraL~~ 157 (343)
T PRK11153 81 RRQIGMIFQH--FNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLS-DKADRYPAQLSGGQKQRVAIARALAS 157 (343)
T ss_pred hcCEEEEeCC--CccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHc
Confidence 2344443 3466678999999865321 11 23567889999995 67789999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 561 ~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++.++|||+++|++|+++. .|..+++.
T Consensus 158 ~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~-~g~~~~~~ 229 (343)
T PRK11153 158 NPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVE-QGTVSEVF 229 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 99999999999999999999999999865 4699999999999999999999999999985 45555443
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=346.40 Aligned_cols=205 Identities=26% Similarity=0.400 Sum_probs=174.4
Q ss_pred EEEEEeeeeeeCC-----eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---------
Q 006442 424 VVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~-----~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------- 489 (645)
.|+++||++.|++ +++|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 3899999999974 46999999999999999999999999999999999999999999999998752
Q ss_pred ---cchhccchhhcCCCCCCHHHHHHhhhcc--cc----HHHHHHHHhhcCCC-hhhhccCcCcCCHhHHHHHHHHHHHc
Q 006442 490 ---PNYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFK-ADMLDRKVSLLSGGEKARLAFCKFMV 559 (645)
Q Consensus 490 ---~~~~~q~~~~~l~~~~tv~e~v~~~~~~--~~----~~~~~~~L~~~~l~-~~~~~~~~~~LSgGqkqrv~lAral~ 559 (645)
.+|++|+.... .+..|+.+|+.+.... .. .+.+..+++.+|+. .+..++++.+||||||||++|||||+
T Consensus 82 ~~~ig~v~q~~~~~-~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~ 160 (287)
T PRK13637 82 RKKVGLVFQYPEYQ-LFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVA 160 (287)
T ss_pred hhceEEEecCchhc-cccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHH
Confidence 24556653222 2467999999864321 11 23577899999995 25678999999999999999999999
Q ss_pred cCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 560 ~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||||++|++|++.. .|+.+++++
T Consensus 161 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~-~g~~~~~~~ 234 (287)
T PRK13637 161 MEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCEL-QGTPREVFK 234 (287)
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHHh
Confidence 999999999999999999999999999764 4699999999999999999999999999985 466666543
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=334.61 Aligned_cols=191 Identities=30% Similarity=0.421 Sum_probs=165.9
Q ss_pred EEEEEeeeeeeC-CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-------------
Q 006442 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~-~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------- 489 (645)
+|+++|+++.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 478999999994 678999999999999999999999999999999999999999999999998652
Q ss_pred cchhccchhhcCCCCCCHHHHHHhhhc------cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCC
Q 006442 490 PNYFEQNQAEALDLDKTVLETVAEAAE------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (645)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~v~~~~~------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 563 (645)
.+|++|. ..+++..|+.+|+..... ....+++.++++.+++. +..++++.+|||||||||+|||||+.+|+
T Consensus 81 i~~~~q~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (214)
T TIGR02673 81 IGVVFQD--FRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLE-HKADAFPEQLSGGEQQRVAIARAIVNSPP 157 (214)
T ss_pred eEEEecC--hhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhCCCC
Confidence 1233443 345567899999876421 11234578899999995 56789999999999999999999999999
Q ss_pred eEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCe
Q 006442 564 LLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSN 617 (645)
Q Consensus 564 lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~ 617 (645)
+|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+
T Consensus 158 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 158 LLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999864 5699999999999999999999999884
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=351.21 Aligned_cols=208 Identities=24% Similarity=0.421 Sum_probs=177.4
Q ss_pred CCcEEEEEeeeeeeCC-------------eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECcee
Q 006442 421 GRSVVTIKNLEFGYED-------------RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (645)
Q Consensus 421 ~~~~i~~~~v~~~y~~-------------~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~ 487 (645)
.+++|+++|+++.|+. ..+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~ 84 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKD 84 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEE
Confidence 3568999999999962 468999999999999999999999999999999999999999999999987
Q ss_pred cc-------------cchhccchhhcCCCCCCHHHHHHhhhc----ccc----HHHHHHHHhhcCCChhhhccCcCcCCH
Q 006442 488 VL-------------PNYFEQNQAEALDLDKTVLETVAEAAE----DWR----IDDIKGLLGRCNFKADMLDRKVSLLSG 546 (645)
Q Consensus 488 ~~-------------~~~~~q~~~~~l~~~~tv~e~v~~~~~----~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSg 546 (645)
+. .+|+.|+....+++..|+.+|+.+... ... .+.+.++|+.+++..+..++++++|||
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSg 164 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSG 164 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCH
Confidence 52 235566543357778999999875321 111 234678899999965678999999999
Q ss_pred hHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeC
Q 006442 547 GEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYA 622 (645)
Q Consensus 547 Gqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~ 622 (645)
||||||+|||||+.+|++|||||||++||+.++..+.++|++. +.|+|+||||++++.++||||++|++|++++.
T Consensus 165 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~- 243 (331)
T PRK15079 165 GQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVEL- 243 (331)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-
Confidence 9999999999999999999999999999999999999988754 56999999999999999999999999999864
Q ss_pred CChhHHH
Q 006442 623 GDYNQVQ 629 (645)
Q Consensus 623 ~~~~~~~ 629 (645)
|+.++++
T Consensus 244 g~~~~i~ 250 (331)
T PRK15079 244 GTYDEVY 250 (331)
T ss_pred cCHHHHH
Confidence 5555544
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=340.40 Aligned_cols=208 Identities=22% Similarity=0.298 Sum_probs=168.5
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEEcCCC----------
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN---------- 160 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p-----~~G~I~~~~~~---------- 160 (645)
.+|+++|++++|++.++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 6 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (254)
T PRK14273 6 AIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILE 85 (254)
T ss_pred ceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHH
Confidence 369999999999888899999999999999999999999999999999999987 48999987632
Q ss_pred --ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHH
Q 006442 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (645)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (645)
..|+|++|++.++ ..||+||+....... . .......+++
T Consensus 86 ~~~~i~~v~q~~~~~-~~tv~eni~~~~~~~---------------~-----------------------~~~~~~~~~~ 126 (254)
T PRK14273 86 LRRKIGMVFQTPNPF-LMSIYDNISYGPKIH---------------G-----------------------TKDKKKLDEI 126 (254)
T ss_pred HhhceEEEeeccccc-cCcHHHHHHHHHHhc---------------C-----------------------CCCHHHHHHH
Confidence 2499999998876 589999985321100 0 0000112233
Q ss_pred HHhhchhcCCC---cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 006442 239 VSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (645)
Q Consensus 239 i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivs 313 (645)
+.++++.+|+. .+..++.+.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|++ .+.|||++|
T Consensus 127 ~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~s 206 (254)
T PRK14273 127 VEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVT 206 (254)
T ss_pred HHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 44555555552 1346778999999999999999999999999999999999999999999887753 368999999
Q ss_pred cCHHHHHhhcCeEEEEcCceeEEeccChHH
Q 006442 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
|+++++..+||+|+++++|++. ..|...+
T Consensus 207 H~~~~~~~~~d~i~~l~~G~i~-~~g~~~~ 235 (254)
T PRK14273 207 HNMQQAGRISDRTAFFLNGCIE-EESSTDE 235 (254)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EeCCHHH
Confidence 9999999999999999999984 4455443
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=344.51 Aligned_cols=206 Identities=26% Similarity=0.388 Sum_probs=171.2
Q ss_pred cEEEEeEEEEeC-CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----------ceEE
Q 006442 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (645)
Q Consensus 97 ~i~i~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-----------~~i~ 164 (645)
+|+++|++++|+ +.++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..|+
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 378999999995 4679999999999999999999999999999999999999999999988642 2499
Q ss_pred EEeccCcc-CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhc
Q 006442 165 FLSQEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (645)
Q Consensus 165 ~v~Q~~~~-~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (645)
|++|++.. ++..|+.+|+...... ...+.....+++.+++
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~---------------------------------------~~~~~~~~~~~~~~~l 121 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPEN---------------------------------------LCLPPIEIRKRVDRAL 121 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHH---------------------------------------cCCCHHHHHHHHHHHH
Confidence 99999863 4568999998521100 0011122334566778
Q ss_pred hhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHH
Q 006442 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (645)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~ 320 (645)
+.+|+. +..++++.+||||||||++|||||+.+|+||||||||+|||+.++..+.+.|+ +.|.|||++|||++++.
T Consensus 122 ~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~ 200 (274)
T PRK13644 122 AEIGLE-KYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH 200 (274)
T ss_pred HHCCCH-HHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh
Confidence 888885 56788999999999999999999999999999999999999999999988774 35899999999999995
Q ss_pred hhcCeEEEEcCceeEEeccChHHH
Q 006442 321 QLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 321 ~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
.||+|+++++|++. +.|+..++
T Consensus 201 -~~d~v~~l~~G~i~-~~g~~~~~ 222 (274)
T PRK13644 201 -DADRIIVMDRGKIV-LEGEPENV 222 (274)
T ss_pred -hCCEEEEEECCEEE-EECCHHHH
Confidence 59999999999974 55665544
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=343.39 Aligned_cols=216 Identities=21% Similarity=0.371 Sum_probs=176.8
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCC---ccEEEEcCCC------------
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVIKAKSN------------ 160 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~---~G~I~~~~~~------------ 160 (645)
++|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|..
T Consensus 3 ~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (262)
T PRK09984 3 TIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82 (262)
T ss_pred cEEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHH
Confidence 4699999999999889999999999999999999999999999999999999986 4999988742
Q ss_pred ---ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHH
Q 006442 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (645)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (645)
..++|++|++.+++..|+.+|+........... ... . .......+.
T Consensus 83 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~-------~~~-----------------------~-~~~~~~~~~ 131 (262)
T PRK09984 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFW-------RTC-----------------------F-SWFTREQKQ 131 (262)
T ss_pred HHHhheEEEccccccccCCcHHHHHHhhhcccccch-------hhh-----------------------c-ccccHHHHH
Confidence 148999999988788899999853210000000 000 0 000012234
Q ss_pred HHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEe
Q 006442 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIIS 313 (645)
Q Consensus 238 ~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivs 313 (645)
++.++++.+|+. ...++.+.+|||||||||+|||||+.+|++|||||||+|||+.+++++.++|++ .|.|||++|
T Consensus 132 ~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~t 210 (262)
T PRK09984 132 RALQALTRVGMV-HFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTL 210 (262)
T ss_pred HHHHHHHHcCCH-HHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 567788888986 577889999999999999999999999999999999999999999999888753 479999999
Q ss_pred cCHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
||++++..+||+|+++++|++ .+.|+++++
T Consensus 211 H~~~~~~~~~d~i~~l~~g~i-~~~g~~~~~ 240 (262)
T PRK09984 211 HQVDYALRYCERIVALRQGHV-FYDGSSQQF 240 (262)
T ss_pred CCHHHHHHhCCEEEEEECCEE-EEeCCHHHh
Confidence 999999999999999999998 566776653
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=390.33 Aligned_cols=315 Identities=20% Similarity=0.246 Sum_probs=187.4
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHH---------HHHcCCCCCccEEEEcCCCceEEEEe
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLR---------IIAGQEEPDSGNVIKAKSNMKIAFLS 167 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~---------~l~G~~~p~~G~I~~~~~~~~i~~v~ 167 (645)
.|++++++. ..|+++||+|++|++++|+|+||||||||++ .|.|...+..+ +.. +.-.++-++.
T Consensus 600 ~L~l~~~~~-----~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~-i~g-~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-----HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLS-IQW-GAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-----CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCccccc-ccc-cccceeEEec
Confidence 588888863 3799999999999999999999999999999 56665433211 111 1112456666
Q ss_pred ccCccCC-C---CC---HHHHHHHhhHHHHHH-HHHHHHHHHHHh-------hc---c-------c-------------h
Q 006442 168 QEFEVSM-S---RT---VREEFMSAFKEEMEI-AGKLERVQKALE-------SA---V-------D-------------D 209 (645)
Q Consensus 168 Q~~~~~~-~---~T---v~eni~~~~~~~~~~-~~~~~~~~~~~~-------~~---~-------~-------------~ 209 (645)
|.|.--. . .| +++.|...|....+. ..........+. .| . + .
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 7653211 1 11 444444332210000 000000000000 00 0 0 0
Q ss_pred hHHHHhHHHHH---HHHH---HHH--HhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHc---cCC
Q 006442 210 MDLMGRLLDEF---DLLQ---RKA--QAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL---QDP 278 (645)
Q Consensus 210 ~~~~~~~~~~~---~~~~---~~~--~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~---~~p 278 (645)
.+.++..++.. +.+. ... ...+...+.+++ ++|..+|+.....++++.+|||||+||++||+||+ .+|
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P 831 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKP 831 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCC
Confidence 00110000000 0000 000 011223455566 47888999632368899999999999999999997 699
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCeEEEEc------CceeEEeccChHHHHHHHH
Q 006442 279 DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETE------MGVSRTYEGNYSQYVLEKA 349 (645)
Q Consensus 279 ~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d~i~~l~------~G~~~~~~g~~~~~~~~~~ 349 (645)
++|||||||+|||+.+++.|.++|+ +.|.|||+|||+++++ .+||++++|. +|++ ...|+.+++.....
T Consensus 832 ~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~i-v~~Gtpeel~~~~s 909 (1809)
T PRK00635 832 TLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADYVLELGPEGGNLGGYL-LASCSPEELIHLHT 909 (1809)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEE-EEeCCHHHHHhccC
Confidence 9999999999999999999988774 4689999999999999 7999999995 4555 45666554321100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhhcccccccceEEeccCCCCCCCcEEEEEe
Q 006442 350 AWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKN 429 (645)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~rl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~ 429 (645)
.. . . .+...+.. . . ..+ ... |+.. .. ++..+
T Consensus 910 ~t-----~------~---~l~~~l~~-------------------~---~--~~~------~~~-~~~~---~~-l~~~~ 940 (1809)
T PRK00635 910 PT-----A------K---ALRPYLSS-------------------P---Q--ELP------YLP-DPSP---KP-PVPAD 940 (1809)
T ss_pred ch-----H------H---HHHHHhhc-------------------c---c--ccc------ccc-cccc---cc-cccce
Confidence 00 0 0 00000000 0 0 000 000 1100 11 44556
Q ss_pred eeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHH
Q 006442 430 LEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470 (645)
Q Consensus 430 v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l 470 (645)
+++.+.....|+++||+|++|++++|+|+||||||||+..+
T Consensus 941 i~i~~~~~~~lk~isl~i~~gei~~itG~nGsGKStL~~~~ 981 (1809)
T PRK00635 941 ITIKNAYQHNLKHIDLSLPRNALTAVTGPSASGKHSLVFDI 981 (1809)
T ss_pred EEEeccccccccceeEEecCCcEEEEECCCCCChhHHHHHH
Confidence 66666545679999999999999999999999999977665
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=335.60 Aligned_cols=197 Identities=26% Similarity=0.449 Sum_probs=166.7
Q ss_pred EEEEEeeeeeeCCe----eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------
Q 006442 424 VVTIKNLEFGYEDR----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~~----~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (645)
+|+++||+++|+++ ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 47899999999765 7999999999999999999999999999999999999999999999997652
Q ss_pred ---cchhccchhhcCCCCCCHHHHHHhhhcc----ccH---HH-HHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHH
Q 006442 490 ---PNYFEQNQAEALDLDKTVLETVAEAAED----WRI---DD-IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (645)
Q Consensus 490 ---~~~~~q~~~~~l~~~~tv~e~v~~~~~~----~~~---~~-~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral 558 (645)
.+|++|+....+.+..|+.+|+...... ... .. +.++++.+++.....++++.+|||||||||+|||||
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 1244444322355678999998753211 111 11 247889999854567899999999999999999999
Q ss_pred ccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEe
Q 006442 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (645)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~ 620 (645)
+.+|++|||||||++||+.+++.+.+.|+++ +.|||+||||++++..+||++++|++|++..
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226 (228)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence 9999999999999999999999999999764 4699999999999999999999999999874
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=347.77 Aligned_cols=204 Identities=23% Similarity=0.383 Sum_probs=179.1
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---------cchhc
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNYFE 494 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------~~~~~ 494 (645)
.++++|++++|+++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+|++
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~ 81 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLP 81 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEec
Confidence 489999999999888999999999999999999999999999999999999999999999998752 24555
Q ss_pred cchhhcCCCCCCHHHHHHhhhcc--cc----HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEee
Q 006442 495 QNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568 (645)
Q Consensus 495 q~~~~~l~~~~tv~e~v~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 568 (645)
|. ..+++..|+.+|+...... .. ..++..+++.+|+. +..++++..|||||||||+|||||+.+|++||||
T Consensus 82 q~--~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLD 158 (301)
T TIGR03522 82 EH--NPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR-PEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILD 158 (301)
T ss_pred CC--CCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 54 3566778999998754321 11 34578899999995 5679999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHH
Q 006442 569 EPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSL 631 (645)
Q Consensus 569 EPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~ 631 (645)
|||+|||+.+++.+.+.|+++ +.|||++||+++++.++|||+++|++|++.. .|+.+++...
T Consensus 159 EPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~-~g~~~~~~~~ 222 (301)
T TIGR03522 159 EPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVA-DKKLDELSAA 222 (301)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHHHh
Confidence 999999999999999999876 4699999999999999999999999999984 6888887553
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=343.30 Aligned_cols=211 Identities=24% Similarity=0.315 Sum_probs=174.7
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceEEE
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i~~ 165 (645)
..|+++|++++|+++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 6 ~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 85 (265)
T PRK10253 6 ARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGL 85 (265)
T ss_pred cEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEE
Confidence 35999999999998889999999999999999999999999999999999999999999998742 25999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchh
Q 006442 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (645)
Q Consensus 166 v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (645)
++|++.+++..|+.+|+.......... +. ........++.++++.
T Consensus 86 v~q~~~~~~~~tv~~~~~~~~~~~~~~----------~~-------------------------~~~~~~~~~~~~~l~~ 130 (265)
T PRK10253 86 LAQNATTPGDITVQELVARGRYPHQPL----------FT-------------------------RWRKEDEEAVTKAMQA 130 (265)
T ss_pred eeccCcCCCCCcHHHHHHhCccccccc----------cc-------------------------CCCHHHHHHHHHHHHH
Confidence 999998877889999985321000000 00 0000112345677888
Q ss_pred cCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHh
Q 006442 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~ 321 (645)
+|+. +..++.+.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|++ .+.|||++|||++++.+
T Consensus 131 ~~l~-~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~ 209 (265)
T PRK10253 131 TGIT-HLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACR 209 (265)
T ss_pred cCCH-HHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 8885 567899999999999999999999999999999999999999999999887743 48899999999999999
Q ss_pred hcCeEEEEcCceeEEeccChHH
Q 006442 322 LCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 322 ~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
+||+++++++|++. ..|...+
T Consensus 210 ~~d~i~~l~~G~i~-~~g~~~~ 230 (265)
T PRK10253 210 YASHLIALREGKIV-AQGAPKE 230 (265)
T ss_pred hCCEEEEEECCEEE-EeCCHHH
Confidence 99999999999974 4555443
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=349.64 Aligned_cols=208 Identities=24% Similarity=0.326 Sum_probs=175.2
Q ss_pred CCCcEEEEEeeeeeeCC-----eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----
Q 006442 420 SGRSVVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----- 489 (645)
Q Consensus 420 ~~~~~i~~~~v~~~y~~-----~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----- 489 (645)
++.++|+++|+++.|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 17 ~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 17 SDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNN 96 (320)
T ss_pred CCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccc
Confidence 45678999999999974 36999999999999999999999999999999999999999999999986542
Q ss_pred ---------------------cchhccchhhcCCCCCCHHHHHHhhhcc--c----cHHHHHHHHhhcCCChhhhccCcC
Q 006442 490 ---------------------PNYFEQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVS 542 (645)
Q Consensus 490 ---------------------~~~~~q~~~~~l~~~~tv~e~v~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~ 542 (645)
.+|+.|+....+ +..|+.+|+.++... . ....+..+++.+++..+..++.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 175 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQL-FKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPF 175 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhcc-ccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcc
Confidence 123444432233 356999999765321 1 123467889999996456789999
Q ss_pred cCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEE
Q 006442 543 LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQ 619 (645)
Q Consensus 543 ~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~ 619 (645)
+|||||||||+|||||+++|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+|||+++|++|+++
T Consensus 176 ~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~ 255 (320)
T PRK13631 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKIL 255 (320)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999754 469999999999999999999999999998
Q ss_pred eeCCChhHHH
Q 006442 620 DYAGDYNQVQ 629 (645)
Q Consensus 620 ~~~~~~~~~~ 629 (645)
. .|+.++++
T Consensus 256 ~-~g~~~~~~ 264 (320)
T PRK13631 256 K-TGTPYEIF 264 (320)
T ss_pred E-eCCHHHHh
Confidence 5 46666554
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=340.62 Aligned_cols=206 Identities=23% Similarity=0.350 Sum_probs=175.8
Q ss_pred CcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc------------
Q 006442 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------ 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------ 489 (645)
+..|+++|+++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 3 ENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred CccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccc
Confidence 45699999999999889999999999999999999999999999999999999999999999997652
Q ss_pred -----------cchhccchhhcCCCCCCHHHHHHhhhc---c----ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHH
Q 006442 490 -----------PNYFEQNQAEALDLDKTVLETVAEAAE---D----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKAR 551 (645)
Q Consensus 490 -----------~~~~~q~~~~~l~~~~tv~e~v~~~~~---~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqr 551 (645)
.+|++|+ ..+.+..|+.+|+..... . ....++.++++.+|+.....++++.+||||||||
T Consensus 83 ~~~~~~~~~~~i~~v~q~--~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qr 160 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQH--FNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQR 160 (257)
T ss_pred cchHHHHHhhceEEEecC--cccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHH
Confidence 1334443 345566899999875321 1 1124577899999996433478899999999999
Q ss_pred HHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHH
Q 006442 552 LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQV 628 (645)
Q Consensus 552 v~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~ 628 (645)
++|||||+.+|++|||||||++||+.+++.+.+.|+++ +.|||+||||++++..+|||+++|++|+++. .++.+++
T Consensus 161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 239 (257)
T PRK10619 161 VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE-EGAPEQL 239 (257)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHh
Confidence 99999999999999999999999999999999998765 4699999999999999999999999999985 5777776
Q ss_pred HH
Q 006442 629 QS 630 (645)
Q Consensus 629 ~~ 630 (645)
.+
T Consensus 240 ~~ 241 (257)
T PRK10619 240 FG 241 (257)
T ss_pred hh
Confidence 53
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=336.64 Aligned_cols=201 Identities=28% Similarity=0.422 Sum_probs=172.8
Q ss_pred EEEEEeeeeeeCCe----eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc---------
Q 006442 424 VVTIKNLEFGYEDR----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP--------- 490 (645)
Q Consensus 424 ~i~~~~v~~~y~~~----~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~--------- 490 (645)
+|+++|++++|+++ ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 47899999999876 89999999999999999999999999999999999999999999999987521
Q ss_pred ----chhccchhhcCCCCCCHHHHHHhhhcc--c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHcc
Q 006442 491 ----NYFEQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560 (645)
Q Consensus 491 ----~~~~q~~~~~l~~~~tv~e~v~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~ 560 (645)
+|++|+ ..+++..|+.+|+...... . ....+.++++.+++. +..++++.+|||||||||+|||||+.
T Consensus 81 ~~~i~~~~q~--~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~ 157 (233)
T cd03258 81 RRRIGMIFQH--FNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLE-DKADAYPAQLSGGQKQRVGIARALAN 157 (233)
T ss_pred HhheEEEccC--cccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 233333 3455678999998764321 1 123577889999994 66789999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHH
Q 006442 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQV 628 (645)
Q Consensus 561 ~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~ 628 (645)
+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .++.+++
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 228 (233)
T cd03258 158 NPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVE-EGTVEEV 228 (233)
T ss_pred CCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecCHHHH
Confidence 99999999999999999999999999764 4599999999999999999999999999985 4665554
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=341.00 Aligned_cols=211 Identities=18% Similarity=0.285 Sum_probs=171.2
Q ss_pred CCccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEEcCCC--------
Q 006442 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN-------- 160 (645)
Q Consensus 94 ~~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p-----~~G~I~~~~~~-------- 160 (645)
.+..|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 16 ~~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~ 95 (267)
T PRK14235 16 TEIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95 (267)
T ss_pred CCceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccch
Confidence 34569999999999988899999999999999999999999999999999999975 89999987632
Q ss_pred ----ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHH
Q 006442 161 ----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (645)
Q Consensus 161 ----~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (645)
..++|++|++.+++ .|+.||+....... .+. .......
T Consensus 96 ~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~------------~~~-------------------------~~~~~~~ 137 (267)
T PRK14235 96 VELRARVGMVFQKPNPFP-KSIYENVAYGPRIH------------GLA-------------------------RSKAELD 137 (267)
T ss_pred HHHhhceEEEecCCCCCC-CcHHHHHHHHHHhc------------ccc-------------------------cchHHHH
Confidence 24899999988765 59999985321000 000 0001123
Q ss_pred HHHHhhchhcCCCc---ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEE
Q 006442 237 AKVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311 (645)
Q Consensus 237 ~~i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIi 311 (645)
.++.++++.+|+.. ...++++.+||||||||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+
T Consensus 138 ~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiii 217 (267)
T PRK14235 138 EIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVI 217 (267)
T ss_pred HHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 34556777777742 245778999999999999999999999999999999999999999999988753 3689999
Q ss_pred EecCHHHHHhhcCeEEEEcCceeEEeccChHH
Q 006442 312 ISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 312 vsHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
+||+++++..+||+++++++|++. ..|...+
T Consensus 218 vtH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~ 248 (267)
T PRK14235 218 VTHSMQQAARVSQRTAFFHLGNLV-EVGDTEK 248 (267)
T ss_pred EEcCHHHHHhhCCEEEEEECCEEE-EeCCHHH
Confidence 999999999999999999999984 4455443
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=338.72 Aligned_cols=209 Identities=25% Similarity=0.405 Sum_probs=171.0
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------------
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------------- 160 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~---------------- 160 (645)
+|+++|++++|++..+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (253)
T TIGR02323 3 LLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRR 82 (253)
T ss_pred eEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHH
Confidence 5999999999988889999999999999999999999999999999999999999999997643
Q ss_pred ---ceEEEEeccCc--cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcH
Q 006442 161 ---MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (645)
Q Consensus 161 ---~~i~~v~Q~~~--~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (645)
..++|++|++. +.+..|+.+|+...+.. ... ......
T Consensus 83 ~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~--------------~~~------------------------~~~~~~ 124 (253)
T TIGR02323 83 LMRTEWGFVHQNPRDGLRMRVSAGANIGERLMA--------------IGA------------------------RHYGNI 124 (253)
T ss_pred hhhcceEEEEeCcccccCccccHHHHHHHHHHH--------------hcc------------------------cchHHH
Confidence 14899999974 33456888887421100 000 000011
Q ss_pred HHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEE
Q 006442 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVI 311 (645)
Q Consensus 236 ~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIi 311 (645)
+..+.++++.+|+.....++.+.+|||||||||+|||||+.+|++|||||||+|||+.+++++.++|+ +.+.|||+
T Consensus 125 ~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~ 204 (253)
T TIGR02323 125 RAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVII 204 (253)
T ss_pred HHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 24556778888886456788899999999999999999999999999999999999999999988774 24899999
Q ss_pred EecCHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 312 ISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 312 vsHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
|||+++++..+||+++++++|++. ..|...++
T Consensus 205 vsH~~~~~~~~~d~~~~l~~G~i~-~~~~~~~~ 236 (253)
T TIGR02323 205 VTHDLGVARLLAQRLLVMQQGRVV-ESGLTDQV 236 (253)
T ss_pred EeCCHHHHHHhcCEEEEEECCEEE-EECCHHHH
Confidence 999999999999999999999984 44554443
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=382.43 Aligned_cols=211 Identities=30% Similarity=0.488 Sum_probs=183.9
Q ss_pred CCccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccC-cc
Q 006442 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF-EV 172 (645)
Q Consensus 94 ~~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~-~~ 172 (645)
...+|+++|++++|+++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+ +....|||++|++ .+
T Consensus 316 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~~i~y~~q~~~~l 394 (635)
T PRK11147 316 GKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLEVAYFDQHRAEL 394 (635)
T ss_pred CCceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCcEEEEEeCccccc
Confidence 345799999999999888999999999999999999999999999999999999999999998 5567899999986 46
Q ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCccc
Q 006442 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (645)
Q Consensus 173 ~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~ 252 (645)
++..||.+|+...... .........+.+++..+++..+.
T Consensus 395 ~~~~tv~e~l~~~~~~-----------------------------------------~~~~~~~~~~~~~l~~~~l~~~~ 433 (635)
T PRK11147 395 DPEKTVMDNLAEGKQE-----------------------------------------VMVNGRPRHVLGYLQDFLFHPKR 433 (635)
T ss_pred CCCCCHHHHHHhhccc-----------------------------------------ccccchHHHHHHHHHhcCCCHHH
Confidence 6788999998532100 00000123456778888886566
Q ss_pred ccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEc-C
Q 006442 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETE-M 331 (645)
Q Consensus 253 ~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~i~~l~-~ 331 (645)
.++++.+|||||||||+|||||+.+|++|||||||||||+.+++.|.++|++.+.|||+||||++++..+||+|++++ +
T Consensus 434 ~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~ 513 (635)
T PRK11147 434 AMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGN 513 (635)
T ss_pred HhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCC
Confidence 789999999999999999999999999999999999999999999999998888899999999999999999999997 8
Q ss_pred ceeEEeccChHHHHH
Q 006442 332 GVSRTYEGNYSQYVL 346 (645)
Q Consensus 332 G~~~~~~g~~~~~~~ 346 (645)
|++..|.|+|+.|..
T Consensus 514 g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 514 GKIGRYVGGYHDARQ 528 (635)
T ss_pred CeEEEccCCHHHHHH
Confidence 999999999999854
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=339.53 Aligned_cols=209 Identities=21% Similarity=0.318 Sum_probs=170.9
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEEcCCC-----------
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN----------- 160 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p-----~~G~I~~~~~~----------- 160 (645)
.|+++|++++|++.++|+++||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~ 83 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence 58999999999988899999999999999999999999999999999999974 79999997642
Q ss_pred -ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHH
Q 006442 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (645)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (645)
..++|++|++.+++..|+.+|+...+... . .......++++
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~---------------~-----------------------~~~~~~~~~~~ 125 (258)
T PRK14241 84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKLN---------------G-----------------------VRNKKDLDELV 125 (258)
T ss_pred hcceEEEccccccCCCCcHHHHHHHHHHhc---------------C-----------------------CCCHHHHHHHH
Confidence 24999999988877889999985321100 0 00011223345
Q ss_pred HhhchhcCCC---cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 006442 240 SKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (645)
Q Consensus 240 ~~ll~~lgl~---~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsH 314 (645)
.++++.+|+. .+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|++ .++|||++||
T Consensus 126 ~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH 205 (258)
T PRK14241 126 EKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTH 205 (258)
T ss_pred HHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 5667777763 2356788999999999999999999999999999999999999999999888753 3689999999
Q ss_pred CHHHHHhhcCeEEEEc------CceeEEeccChHHH
Q 006442 315 DRAFLDQLCTKIVETE------MGVSRTYEGNYSQY 344 (645)
Q Consensus 315 d~~~l~~~~d~i~~l~------~G~~~~~~g~~~~~ 344 (645)
+++++.++||+|++++ +|++. ..|+..+.
T Consensus 206 ~~~~~~~~~d~i~~l~~~~~~~~g~i~-~~~~~~~~ 240 (258)
T PRK14241 206 NMQQAARVSDQTAFFNLEATGKPGRLV-EIDDTEKI 240 (258)
T ss_pred CHHHHHHhCCEEEEEecccCCCCceEE-ecCCHHHH
Confidence 9999999999999996 68773 45665443
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=340.51 Aligned_cols=209 Identities=22% Similarity=0.293 Sum_probs=169.8
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEEcCCC----------
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN---------- 160 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~-----p~~G~I~~~~~~---------- 160 (645)
..|+++|++++|++.++|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 12 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~ 91 (260)
T PRK10744 12 SKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIAL 91 (260)
T ss_pred ceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHH
Confidence 45999999999998889999999999999999999999999999999999986 589999987632
Q ss_pred --ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHH
Q 006442 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (645)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (645)
.+|+|++|++.+++ .|+++|+....... . ..+.....++
T Consensus 92 ~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~--------------~------------------------~~~~~~~~~~ 132 (260)
T PRK10744 92 LRAKVGMVFQKPTPFP-MSIYDNIAFGVRLF--------------E------------------------KLSRAEMDER 132 (260)
T ss_pred HhcceEEEecCCccCc-CcHHHHHhhhHhhc--------------C------------------------CCCHHHHHHH
Confidence 25999999987755 89999985321100 0 0011122334
Q ss_pred HHhhchhcCCC---cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 006442 239 VSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (645)
Q Consensus 239 i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivs 313 (645)
+.++++.+|+. ....++.+.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|||++|
T Consensus 133 ~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~s 212 (260)
T PRK10744 133 VEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVT 212 (260)
T ss_pred HHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 55666777763 1345778899999999999999999999999999999999999999999888753 368999999
Q ss_pred cCHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
|+++++..+||+++++++|++. ..|..+++
T Consensus 213 H~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 242 (260)
T PRK10744 213 HNMQQAARCSDYTAFMYLGELI-EFGNTDTI 242 (260)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999984 44554443
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=348.01 Aligned_cols=204 Identities=23% Similarity=0.300 Sum_probs=173.6
Q ss_pred EEEEEeeeeeeCCe-----eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceec----------
Q 006442 424 VVTIKNLEFGYEDR-----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------- 488 (645)
Q Consensus 424 ~i~~~~v~~~y~~~-----~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~---------- 488 (645)
+|+++|+++.|++. ++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 48999999999743 599999999999999999999999999999999999999999999986542
Q ss_pred ------------------------ccchhccchhhcCCCCCCHHHHHHhhhcc------ccHHHHHHHHhhcCCChhhhc
Q 006442 489 ------------------------LPNYFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLD 538 (645)
Q Consensus 489 ------------------------~~~~~~q~~~~~l~~~~tv~e~v~~~~~~------~~~~~~~~~L~~~~l~~~~~~ 538 (645)
..+|++|+....+ +..|+.+|+.+.... ....++.++++.+|+..+..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l-~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQL-FEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCccccc-ccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 1246666543333 457999999865321 113457889999999646789
Q ss_pred cCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeC
Q 006442 539 RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKG 615 (645)
Q Consensus 539 ~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~ 615 (645)
+++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++. +.|||+||||++++.++||||++|++
T Consensus 161 ~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~ 240 (305)
T PRK13651 161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKD 240 (305)
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999998764 56999999999999999999999999
Q ss_pred CeEEeeCCChhHHH
Q 006442 616 SNLQDYAGDYNQVQ 629 (645)
Q Consensus 616 g~i~~~~~~~~~~~ 629 (645)
|+++. .|..++++
T Consensus 241 G~i~~-~g~~~~~~ 253 (305)
T PRK13651 241 GKIIK-DGDTYDIL 253 (305)
T ss_pred CEEEE-ECCHHHHh
Confidence 99985 46665554
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=344.03 Aligned_cols=207 Identities=24% Similarity=0.372 Sum_probs=173.6
Q ss_pred ccEEEEeEEEEeCC--eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceE
Q 006442 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (645)
Q Consensus 96 ~~i~i~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i 163 (645)
++|+++|++++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..|
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 36999999999974 469999999999999999999999999999999999999999999998743 259
Q ss_pred EEEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhh
Q 006442 164 AFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (645)
Q Consensus 164 ~~v~Q~~~-~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (645)
+|++|++. .++..||.||+...... ......+..+++.++
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~---------------------------------------~~~~~~~~~~~~~~~ 124 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLEN---------------------------------------IGVPREEMVERVDQA 124 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhh---------------------------------------CCCCHHHHHHHHHHH
Confidence 99999984 55678999998532100 001112223456778
Q ss_pred chhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHH
Q 006442 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (645)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~ 318 (645)
+..+|+. +..++.+.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|++ .|.|||++||++++
T Consensus 125 l~~~gL~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~ 203 (279)
T PRK13635 125 LRQVGME-DFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE 203 (279)
T ss_pred HHHcCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 8888986 678889999999999999999999999999999999999999999999988752 38999999999999
Q ss_pred HHhhcCeEEEEcCceeEEeccChHHH
Q 006442 319 LDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 319 l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
+.. ||+|+++++|++ .+.|+..+.
T Consensus 204 ~~~-~d~i~~l~~G~i-~~~g~~~~~ 227 (279)
T PRK13635 204 AAQ-ADRVIVMNKGEI-LEEGTPEEI 227 (279)
T ss_pred HHc-CCEEEEEECCEE-EEECCHHHH
Confidence 975 999999999987 456765544
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=338.41 Aligned_cols=208 Identities=20% Similarity=0.326 Sum_probs=169.5
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC--C---CccEEEEcCCC-----------
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--P---DSGNVIKAKSN----------- 160 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~--p---~~G~I~~~~~~----------- 160 (645)
.|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++ | ++|+|.++|..
T Consensus 4 ~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 83 (252)
T PRK14256 4 KVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSI 83 (252)
T ss_pred EEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHh
Confidence 5899999999988889999999999999999999999999999999999986 4 68999987632
Q ss_pred -ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHH
Q 006442 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (645)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (645)
..++|++|++.+++..|+.||+...+... . ..+....++++
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--------------~------------------------~~~~~~~~~~~ 125 (252)
T PRK14256 84 RRRVGMVFQKPNPFPAMSIYDNVIAGYKLN--------------G------------------------RVNRSEADEIV 125 (252)
T ss_pred hccEEEEecCCCCCCcCcHHHHHHhHHHhc--------------C------------------------CCCHHHHHHHH
Confidence 24999999998877889999985321100 0 00001122345
Q ss_pred HhhchhcCCCc---ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 006442 240 SKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (645)
Q Consensus 240 ~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsH 314 (645)
.++++.+|+.. +..++.+.+||||||||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|||++||
T Consensus 126 ~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH 205 (252)
T PRK14256 126 ESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTH 205 (252)
T ss_pred HHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEEC
Confidence 56666777642 245677899999999999999999999999999999999999999999887753 3689999999
Q ss_pred CHHHHHhhcCeEEEEcCceeEEeccChHH
Q 006442 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 315 d~~~l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
+++++..+||+++++++|++. ..|...+
T Consensus 206 ~~~~~~~~~d~i~~l~~G~i~-~~~~~~~ 233 (252)
T PRK14256 206 NMQQAARVSDYTAFFYMGDLV-ECGETKK 233 (252)
T ss_pred CHHHHHhhCCEEEEEECCEEE-EeCCHHH
Confidence 999999999999999999974 4455443
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=349.83 Aligned_cols=208 Identities=24% Similarity=0.347 Sum_probs=171.8
Q ss_pred cEEEEeEEEEeCC----eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC----CCccEEEEcCCCc-------
Q 006442 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE----PDSGNVIKAKSNM------- 161 (645)
Q Consensus 97 ~i~i~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~----p~~G~I~~~~~~~------- 161 (645)
.|+++|+++.|+. ..+|+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 5899999999976 469999999999999999999999999999999999997 4899999987531
Q ss_pred -------eEEEEeccCc--cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCCh
Q 006442 162 -------KIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (645)
Q Consensus 162 -------~i~~v~Q~~~--~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (645)
.|+|++|++. +.+.+|+.+++...+.. ......
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~--------------------------------------~~~~~~ 124 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKV--------------------------------------HQGGNK 124 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHH--------------------------------------hcCCCH
Confidence 4999999984 56678888876422110 000111
Q ss_pred hcHHHHHHhhchhcCCCc--ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCC
Q 006442 233 DTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQD 306 (645)
Q Consensus 233 ~~~~~~i~~ll~~lgl~~--~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g 306 (645)
.+..+++.++++.+|+.. ...++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+ +.|
T Consensus 125 ~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g 204 (326)
T PRK11022 125 KTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKEN 204 (326)
T ss_pred HHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 223456778889999963 35678899999999999999999999999999999999999999999988764 258
Q ss_pred CeEEEEecCHHHHHhhcCeEEEEcCceeEEeccChHH
Q 006442 307 VPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 307 ~tvIivsHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
.|+|+||||++.+.++||+|++|.+|++. ..|+..+
T Consensus 205 ~til~iTHdl~~~~~~adri~vm~~G~iv-e~g~~~~ 240 (326)
T PRK11022 205 MALVLITHDLALVAEAAHKIIVMYAGQVV-ETGKAHD 240 (326)
T ss_pred CEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHH
Confidence 99999999999999999999999999984 4455443
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=342.54 Aligned_cols=207 Identities=24% Similarity=0.366 Sum_probs=172.1
Q ss_pred cEEEEeEEEEeCC-eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC------------ceE
Q 006442 97 GVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------MKI 163 (645)
Q Consensus 97 ~i~i~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~------------~~i 163 (645)
+|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.. ..|
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 3789999999964 569999999999999999999999999999999999999999999998743 248
Q ss_pred EEEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhh
Q 006442 164 AFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (645)
Q Consensus 164 ~~v~Q~~~-~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (645)
+|++|++. .++..||.||+...... . .........++.++
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~--------------~-------------------------~~~~~~~~~~~~~~ 121 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLN--------------L-------------------------GLSKEEVEKRVKEA 121 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHH--------------c-------------------------CCCHHHHHHHHHHH
Confidence 99999973 33457999998521100 0 00111223456677
Q ss_pred chhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHH
Q 006442 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFL 319 (645)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l 319 (645)
++.+|+. +..++++.+|||||+||++|||||+.+|++|||||||+|||+.++.++.++|++ .|.|||++|||++++
T Consensus 122 l~~~~L~-~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~ 200 (275)
T PRK13639 122 LKAVGME-GFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLV 200 (275)
T ss_pred HHHCCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH
Confidence 8888986 577899999999999999999999999999999999999999999999888753 489999999999999
Q ss_pred HhhcCeEEEEcCceeEEeccChHHH
Q 006442 320 DQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 320 ~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
.++||+++++++|++. ..|+.+++
T Consensus 201 ~~~~d~i~~l~~G~i~-~~g~~~~~ 224 (275)
T PRK13639 201 PVYADKVYVMSDGKII-KEGTPKEV 224 (275)
T ss_pred HHhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999874 45665544
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=336.86 Aligned_cols=202 Identities=29% Similarity=0.449 Sum_probs=175.0
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----------cch
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PNY 492 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~~~ 492 (645)
+|+++|+++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGR 81 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeE
Confidence 689999999998888999999999999999999999999999999999999999999999997652 123
Q ss_pred hccchhhcCCCCCCHHHHHHhhhcc--------------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHH
Q 006442 493 FEQNQAEALDLDKTVLETVAEAAED--------------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (645)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~v~~~~~~--------------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral 558 (645)
.+|. ..+.+..|+.+|+...... .....+..+++.+++. +..++++..|||||||||+|||||
T Consensus 82 ~~q~--~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 82 KFQK--PTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLA-DEADRLAGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred eccc--cccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHH
Confidence 3433 3466678999999764210 0123577889999995 667899999999999999999999
Q ss_pred ccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++.++||++++|++|++.. .++.+++.
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~-~~~~~~~~ 230 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLA-EGSLDQVQ 230 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEe-eCCHHHHh
Confidence 9999999999999999999999999999876 3599999999999999999999999999985 56777664
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=348.99 Aligned_cols=207 Identities=24% Similarity=0.410 Sum_probs=177.3
Q ss_pred CcEEEEEeeeeeeCC----------eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--
Q 006442 422 RSVVTIKNLEFGYED----------RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-- 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~----------~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-- 489 (645)
+++|+++|+++.|+. ..+|++|||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 457999999999962 46899999999999999999999999999999999999999999999998752
Q ss_pred -----------cchhccchhhcCCCCCCHHHHHHhhhc---c----ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHH
Q 006442 490 -----------PNYFEQNQAEALDLDKTVLETVAEAAE---D----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKAR 551 (645)
Q Consensus 490 -----------~~~~~q~~~~~l~~~~tv~e~v~~~~~---~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqr 551 (645)
.+|++|+....+++.+++.+++..... . ...+.+.++|+.+|+.....++++++||||||||
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR 162 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH
Confidence 245666654467788899988864321 1 1124578899999996556799999999999999
Q ss_pred HHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhH
Q 006442 552 LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQ 627 (645)
Q Consensus 552 v~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~ 627 (645)
|+|||||+.+|++||+||||++||..++..+.++|.+. +.|||+||||+..+.++||||++|++|++++. |+.++
T Consensus 163 v~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~-g~~~~ 241 (327)
T PRK11308 163 IAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEK-GTKEQ 241 (327)
T ss_pred HHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-CCHHH
Confidence 99999999999999999999999999999999988754 56999999999999999999999999999864 55555
Q ss_pred HH
Q 006442 628 VQ 629 (645)
Q Consensus 628 ~~ 629 (645)
++
T Consensus 242 ~~ 243 (327)
T PRK11308 242 IF 243 (327)
T ss_pred Hh
Confidence 44
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=344.97 Aligned_cols=204 Identities=23% Similarity=0.382 Sum_probs=172.6
Q ss_pred EEEEEeeeeeeCC-----eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---------
Q 006442 424 VVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~-----~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------- 489 (645)
+|+++|+++.|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4889999999973 46999999999999999999999999999999999999999999999998652
Q ss_pred -----cchhccchhhcCCCCCCHHHHHHhhhcc--c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHH
Q 006442 490 -----PNYFEQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (645)
Q Consensus 490 -----~~~~~q~~~~~l~~~~tv~e~v~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral 558 (645)
.+|++|+....+ +..|+.+|+...... . ....+.++++.+++..+..++++.+|||||||||+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral 160 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQL-FENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM 160 (287)
T ss_pred HHHhceEEEEeChhhhh-ccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence 134455432123 357999999754321 1 1234678899999954577999999999999999999999
Q ss_pred ccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++. .|..+++.
T Consensus 161 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 233 (287)
T PRK13641 161 AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIK-HASPKEIF 233 (287)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 9999999999999999999999999999865 3599999999999999999999999999985 46655543
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=325.84 Aligned_cols=205 Identities=24% Similarity=0.476 Sum_probs=182.3
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc------eEEEEeccC
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------KIAFLSQEF 170 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~------~i~~v~Q~~ 170 (645)
++++++|+++|++..+++|+||+|++|++.|++|+|||||||.+|+|+|+++|++|+|.|+|... +|||+|.+-
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEER 81 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEER 81 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhh
Confidence 48999999999999999999999999999999999999999999999999999999999998543 699999999
Q ss_pred ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCc
Q 006442 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (645)
Q Consensus 171 ~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~ 250 (645)
.+++.+||.|.+.. |. ....++..++.+++..+|+.+++.
T Consensus 82 GLy~k~tv~dql~y-la--------------------------------------~LkGm~~~e~~~~~~~wLer~~i~- 121 (300)
T COG4152 82 GLYPKMTVEDQLKY-LA--------------------------------------ELKGMPKAEIQKKLQAWLERLEIV- 121 (300)
T ss_pred ccCccCcHHHHHHH-HH--------------------------------------HhcCCcHHHHHHHHHHHHHhcccc-
Confidence 99999999998742 10 112345556777888889999986
Q ss_pred ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHHHHHhhcCeEE
Q 006442 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQLCTKIV 327 (645)
Q Consensus 251 ~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L---~~~g~tvIivsHd~~~l~~~~d~i~ 327 (645)
....+++.+||-|++|++.+..+++++|+++|||||||||||.+.+.|.+.+ ++.|.|||++||.++.+.++||+++
T Consensus 122 ~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~ll 201 (300)
T COG4152 122 GKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLL 201 (300)
T ss_pred ccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhh
Confidence 5677789999999999999999999999999999999999999999998864 6789999999999999999999999
Q ss_pred EEcCceeEEeccChH
Q 006442 328 ETEMGVSRTYEGNYS 342 (645)
Q Consensus 328 ~l~~G~~~~~~g~~~ 342 (645)
.++.|+. +..|+..
T Consensus 202 mL~kG~~-V~~G~v~ 215 (300)
T COG4152 202 MLKKGQT-VLYGTVE 215 (300)
T ss_pred eecCCce-EEeccHH
Confidence 9999987 4567643
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=355.13 Aligned_cols=205 Identities=27% Similarity=0.457 Sum_probs=178.6
Q ss_pred CCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cch
Q 006442 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNY 492 (645)
Q Consensus 421 ~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~ 492 (645)
..++|+++|+++.|+++.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++. .+|
T Consensus 16 ~~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 95 (377)
T PRK11607 16 LTPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINM 95 (377)
T ss_pred CCceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 456799999999998888999999999999999999999999999999999999999999999998752 246
Q ss_pred hccchhhcCCCCCCHHHHHHhhhcc--c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEE
Q 006442 493 FEQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (645)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~v~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 566 (645)
++|+ ..+++.+|+.+|+.+.... . ..+++.++++.+++. +..++++.+|||||||||+|||||+.+|++||
T Consensus 96 vfQ~--~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLL 172 (377)
T PRK11607 96 MFQS--YALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQ-EFAKRKPHQLSGGQRQRVALARSLAKRPKLLL 172 (377)
T ss_pred EeCC--CccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 6655 4678899999999876431 1 124577899999994 67899999999999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHH----hcCceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 567 LDEPTNHLDIPSKEMLEEAIS----EYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 567 LDEPt~~LD~~s~~~l~~~l~----~~~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
|||||++||..++..|.+.|. +.+.|+|+||||++++..+|||+++|++|++... |..+++.
T Consensus 173 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~-g~~~~~~ 238 (377)
T PRK11607 173 LDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQI-GEPEEIY 238 (377)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEE-cCHHHHH
Confidence 999999999999988886654 3467999999999999999999999999999864 6655544
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=333.19 Aligned_cols=195 Identities=26% Similarity=0.413 Sum_probs=168.6
Q ss_pred EEEEEeeeeee-CCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-------------
Q 006442 424 VVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------- 489 (645)
Q Consensus 424 ~i~~~~v~~~y-~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------- 489 (645)
+|+++|+++.| +++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 47899999999 6678999999999999999999999999999999999999999999999997652
Q ss_pred cchhccchhhcCCCCCCHHHHHHhhhc--ccc----HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCC
Q 006442 490 PNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (645)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~v~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 563 (645)
.+|++|+ ..+.+..|+.+|+..... ... ...+..+++.+++. +..++++.+||||||||++|||||+.+|+
T Consensus 81 i~~~~q~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (222)
T PRK10908 81 IGMIFQD--HHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLL-DKAKNFPIQLSGGEQQRVGIARAVVNKPA 157 (222)
T ss_pred eEEEecC--ccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCCchhCCHHHHHHHHHHHHHHcCCC
Confidence 1244443 345567899999976421 111 23467889999995 56789999999999999999999999999
Q ss_pred eEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEee
Q 006442 564 LLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDY 621 (645)
Q Consensus 564 lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~ 621 (645)
+|||||||++||+.+++.+.+.|.++ +.|||+||||++++..+||++++|++|+++.-
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (222)
T PRK10908 158 VLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHGG 218 (222)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEccC
Confidence 99999999999999999999998865 46999999999999999999999999998753
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=335.60 Aligned_cols=206 Identities=24% Similarity=0.368 Sum_probs=172.2
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------ceEEEEec
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------~~i~~v~Q 168 (645)
+|+++|++++|++.. .++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 ~l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 78 (232)
T PRK10771 1 MLKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78 (232)
T ss_pred CeEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEec
Confidence 378999999998644 38999999999999999999999999999999999999999998753 35999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCC
Q 006442 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (645)
Q Consensus 169 ~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (645)
++.+++..|+.||+...+... .. .....+.++.++++.+|+
T Consensus 79 ~~~~~~~~tv~e~l~~~~~~~-------------~~--------------------------~~~~~~~~~~~~l~~~~l 119 (232)
T PRK10771 79 ENNLFSHLTVAQNIGLGLNPG-------------LK--------------------------LNAAQREKLHAIARQMGI 119 (232)
T ss_pred ccccccCCcHHHHHhcccccc-------------cC--------------------------CCHHHHHHHHHHHHHcCc
Confidence 998877889999985321100 00 000113456677888898
Q ss_pred CcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcC
Q 006442 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (645)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d 324 (645)
. +..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|++ .|+|||++|||++++..+||
T Consensus 120 ~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d 198 (232)
T PRK10771 120 E-DLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAP 198 (232)
T ss_pred H-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC
Confidence 6 578899999999999999999999999999999999999999999998887642 48899999999999999999
Q ss_pred eEEEEcCceeEEeccChHHHH
Q 006442 325 KIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 325 ~i~~l~~G~~~~~~g~~~~~~ 345 (645)
+++++++|++. +.|+.+++.
T Consensus 199 ~i~~l~~g~i~-~~g~~~~~~ 218 (232)
T PRK10771 199 RSLVVADGRIA-WDGPTDELL 218 (232)
T ss_pred EEEEEECCEEE-EeCCHHHHH
Confidence 99999999984 567765543
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=335.23 Aligned_cols=201 Identities=26% Similarity=0.420 Sum_probs=172.5
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----------cchh
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PNYF 493 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~~~~ 493 (645)
|+++|++++|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .+|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYL 80 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEe
Confidence 47899999999888999999999999999999999999999999999999999999999997642 1244
Q ss_pred ccchhhcCCCCCCHHHHHHhhhcc--c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEe
Q 006442 494 EQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567 (645)
Q Consensus 494 ~q~~~~~l~~~~tv~e~v~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 567 (645)
+|. ..+.+..|+.+|+...... . ....+.++++.+++. +..++.+.+|||||||||+|||||+.+|++|||
T Consensus 81 ~q~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 157 (232)
T cd03218 81 PQE--ASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT-HLRKSKASSLSGGERRRVEIARALATNPKFLLL 157 (232)
T ss_pred cCC--ccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 443 3455668999999764321 1 123467889999995 677899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 568 DEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 568 DEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
||||++||+.+++.+.+.|++. +.|||++|||++.+.++||++++|++|++.. .++.+++.
T Consensus 158 DEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 221 (232)
T cd03218 158 DEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLA-EGTPEEIA 221 (232)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE-EeCHHHhh
Confidence 9999999999999999998764 4599999999999999999999999999984 46666654
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-41 Score=310.51 Aligned_cols=201 Identities=29% Similarity=0.462 Sum_probs=174.6
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc--------chhcc
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP--------NYFEQ 495 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~--------~~~~q 495 (645)
+|.+++|.+.|+..+ =.++++|+.||++||+||+||||||||++|+|+..|.+|+|+++|.+... ..++
T Consensus 1 ~l~L~~V~~~y~~~~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlF- 77 (231)
T COG3840 1 MLALDDVRFSYGHLP--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLF- 77 (231)
T ss_pred CccccceEEeeCcce--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhh-
Confidence 367889999997544 35789999999999999999999999999999999999999999987621 1233
Q ss_pred chhhcCCCCCCHHHHHHhhhc------cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeC
Q 006442 496 NQAEALDLDKTVLETVAEAAE------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (645)
Q Consensus 496 ~~~~~l~~~~tv~e~v~~~~~------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 569 (645)
|+.+++..+||.+|+..+.. ....+.+..++.++|+ .+..++.|.+|||||||||+|||+|+++-+||+|||
T Consensus 78 -QEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl-~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDE 155 (231)
T COG3840 78 -QENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGL-AGFLKRLPGELSGGQRQRVALARCLVREQPILLLDE 155 (231)
T ss_pred -hccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhCh-hhHhhhCccccCchHHHHHHHHHHHhccCCeEEecC
Confidence 45688999999999987643 2234568889999999 578899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 570 PTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 570 Pt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|+++|||.-+..|..++.+. +.|++||||.++.+..++++++++++|+|. +.|+.+++++
T Consensus 156 PFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~-~~g~~~~~~~ 219 (231)
T COG3840 156 PFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIA-AQGSTQELLS 219 (231)
T ss_pred chhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEE-eeccHHHHhc
Confidence 99999999999999888754 459999999999999999999999999998 5688777653
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=345.19 Aligned_cols=205 Identities=25% Similarity=0.369 Sum_probs=174.4
Q ss_pred EEEEEeeeeeeCC-----eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---------
Q 006442 424 VVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~-----~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------- 489 (645)
.|+++|+++.|++ +++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 3899999999963 36999999999999999999999999999999999999999999999998752
Q ss_pred -----cchhccchhhcCCCCCCHHHHHHhhhcc--c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHH
Q 006442 490 -----PNYFEQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (645)
Q Consensus 490 -----~~~~~q~~~~~l~~~~tv~e~v~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral 558 (645)
.+|++|+....+ +..|+.+|+.+.... . ....+.++++.+|+..+..++++.+|||||||||+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~l-~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL 160 (286)
T PRK13646 82 PVRKRIGMVFQFPESQL-FEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSIL 160 (286)
T ss_pred HHHhheEEEecChHhcc-chhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 245566533233 346999999865321 1 1245678899999964667899999999999999999999
Q ss_pred ccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++.++|||+++|++|+++. .|+.+++++
T Consensus 161 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~-~g~~~~~~~ 235 (286)
T PRK13646 161 AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVS-QTSPKELFK 235 (286)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ECCHHHHHh
Confidence 9999999999999999999999999999864 4699999999999999999999999999985 466666543
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=340.94 Aligned_cols=205 Identities=29% Similarity=0.404 Sum_probs=176.1
Q ss_pred CCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------c
Q 006442 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------P 490 (645)
Q Consensus 421 ~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~ 490 (645)
++++|+++|+++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 8 ~~~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 8 SDTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred CCceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 456899999999998888999999999999999999999999999999999999999999999997652 2
Q ss_pred chhccchhhcCCCCCCHHHHHHhhhc----------cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHcc
Q 006442 491 NYFEQNQAEALDLDKTVLETVAEAAE----------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560 (645)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~v~~~~~----------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~ 560 (645)
+|++|. ..+.+..|+.+|+..... ......+..+++.+++. +..++++.+|||||||||+|||||+.
T Consensus 88 ~~v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~ 164 (265)
T PRK10575 88 AYLPQQ--LPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLK-PLAHRLVDSLSGGERQRAWIAMLVAQ 164 (265)
T ss_pred EEeccC--CCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH-HHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 344543 245567899999975421 01123577899999994 67799999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 561 ~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
+|+||||||||++||+.+++.+.+.|.++ +.|||+||||++++.++||++++|++|+++. .+..+++.
T Consensus 165 ~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~-~~~~~~~~ 236 (265)
T PRK10575 165 DSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIA-QGTPAELM 236 (265)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE-ecCHHHhc
Confidence 99999999999999999999999988754 4699999999999999999999999999975 46666554
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=332.51 Aligned_cols=198 Identities=26% Similarity=0.386 Sum_probs=170.8
Q ss_pred EEEEeeeeeeCC--eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---------cchh
Q 006442 425 VTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNYF 493 (645)
Q Consensus 425 i~~~~v~~~y~~--~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------~~~~ 493 (645)
|+++|+++.|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 578999999986 78999999999999999999999999999999999999999999999998752 2344
Q ss_pred ccchhhcCCCCCCHHHHHHhhhcc--c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEe
Q 006442 494 EQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567 (645)
Q Consensus 494 ~q~~~~~l~~~~tv~e~v~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 567 (645)
.|+ ..+.+..|+.+|+...... . ....+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||
T Consensus 81 ~q~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 157 (220)
T cd03263 81 PQF--DALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLT-DKANKRARTLSGGMKRKLSLAIALIGGPSVLLL 157 (220)
T ss_pred cCc--CCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 544 3455678999998764211 1 123567889999994 667899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChh
Q 006442 568 DEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626 (645)
Q Consensus 568 DEPt~~LD~~s~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~ 626 (645)
||||++||+.+++.+.+.|+++. .|||++|||++++.++||++++|++|++.. .++.+
T Consensus 158 DEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~-~~~~~ 217 (220)
T cd03263 158 DEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRC-IGSPQ 217 (220)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe-cCCHH
Confidence 99999999999999999998753 599999999999999999999999999985 35544
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=334.76 Aligned_cols=192 Identities=21% Similarity=0.339 Sum_probs=162.7
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceEEE
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i~~ 165 (645)
++|+++|+++.|+++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.. ..++|
T Consensus 6 ~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 85 (225)
T PRK10247 6 PLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSY 85 (225)
T ss_pred ceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEE
Confidence 46999999999988889999999999999999999999999999999999999999999998742 35999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchh
Q 006442 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (645)
Q Consensus 166 v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (645)
++|++.+++ .|++||+..... +. .....+.++.++++.
T Consensus 86 ~~q~~~l~~-~tv~enl~~~~~---------------~~--------------------------~~~~~~~~~~~~l~~ 123 (225)
T PRK10247 86 CAQTPTLFG-DTVYDNLIFPWQ---------------IR--------------------------NQQPDPAIFLDDLER 123 (225)
T ss_pred Eeccccccc-ccHHHHHHhHHh---------------hc--------------------------CCChHHHHHHHHHHH
Confidence 999988765 599999852100 00 000012345567888
Q ss_pred cCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHh
Q 006442 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~ 321 (645)
+|+.....++++.+|||||+|||+|||||+.+|++|||||||++||+.+++.+.++|++ .|.|||++||+++++.
T Consensus 124 ~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~- 202 (225)
T PRK10247 124 FALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN- 202 (225)
T ss_pred cCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-
Confidence 88854567889999999999999999999999999999999999999999999887743 4889999999999996
Q ss_pred hcCeEEEEc
Q 006442 322 LCTKIVETE 330 (645)
Q Consensus 322 ~~d~i~~l~ 330 (645)
.||++++++
T Consensus 203 ~~d~i~~l~ 211 (225)
T PRK10247 203 HADKVITLQ 211 (225)
T ss_pred hCCEEEEEe
Confidence 599999996
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=338.40 Aligned_cols=204 Identities=27% Similarity=0.429 Sum_probs=174.8
Q ss_pred CcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc-----------
Q 006442 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP----------- 490 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~----------- 490 (645)
+.+|+++|+++.|+++++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 3 QPLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred CceEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 347999999999998899999999999999999999999999999999999999999999999986521
Q ss_pred chhccchhhcCCCCCCHHHHHHhhhc------------------cc---cHHHHHHHHhhcCCChhhhccCcCcCCHhHH
Q 006442 491 NYFEQNQAEALDLDKTVLETVAEAAE------------------DW---RIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549 (645)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~v~~~~~------------------~~---~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqk 549 (645)
.|++|+ ..+.+..|+.+|+..... .. ....+..+++.+|+ .+..++++.+||||||
T Consensus 83 ~~~~q~--~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~LS~G~~ 159 (255)
T PRK11300 83 VRTFQH--VRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGL-LEHANRQAGNLAYGQQ 159 (255)
T ss_pred EEeccC--cccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCCh-hhhhhCChhhCCHHHH
Confidence 223443 456677899999886421 00 11346778899999 4678999999999999
Q ss_pred HHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCCh
Q 006442 550 ARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDY 625 (645)
Q Consensus 550 qrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~ 625 (645)
|||+|||||+.+|++|||||||++||+.++..+.+.|.++ +.|||++|||++++.++||++++|++|++.. .++.
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~-~~~~ 238 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLA-NGTP 238 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEe-cCCH
Confidence 9999999999999999999999999999999999998754 4699999999999999999999999999985 4666
Q ss_pred hHHH
Q 006442 626 NQVQ 629 (645)
Q Consensus 626 ~~~~ 629 (645)
+++.
T Consensus 239 ~~~~ 242 (255)
T PRK11300 239 EEIR 242 (255)
T ss_pred HHHh
Confidence 6654
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=369.01 Aligned_cols=210 Identities=25% Similarity=0.454 Sum_probs=177.2
Q ss_pred CCcEEEEEeeeeeeCCe---eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---cchhc
Q 006442 421 GRSVVTIKNLEFGYEDR---LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---PNYFE 494 (645)
Q Consensus 421 ~~~~i~~~~v~~~y~~~---~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---~~~~~ 494 (645)
-++.|+++||+|.|+.+ ++|+|+||+|+|||++|||||||+||||+.++|.++++|++|+|.+||++++ +.|++
T Consensus 462 ~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr 541 (716)
T KOG0058|consen 462 LQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLR 541 (716)
T ss_pred ccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHH
Confidence 45679999999999865 5999999999999999999999999999999999999999999999999873 23333
Q ss_pred cc----hhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCC------h----hhhccCcCcCCHhHHHHHHHHHHHcc
Q 006442 495 QN----QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK------A----DMLDRKVSLLSGGEKARLAFCKFMVK 560 (645)
Q Consensus 495 q~----~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~------~----~~~~~~~~~LSgGqkqrv~lAral~~ 560 (645)
++ .++...+..|+.|||.++......+++....++.+-. + .....+..+||||||||+||||||++
T Consensus 542 ~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr 621 (716)
T KOG0058|consen 542 RKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLR 621 (716)
T ss_pred HHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhc
Confidence 22 1223457899999999988766666666555554321 1 12334556999999999999999999
Q ss_pred CCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHHH
Q 006442 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSLW 632 (645)
Q Consensus 561 ~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~~ 632 (645)
+|.||||||+||+||.+++..++++|.+. +.|||+|+|++.+|+. +|+|+++++|++.+ .|.++++++..
T Consensus 622 ~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~E-~G~h~eLl~~~ 693 (716)
T KOG0058|consen 622 NPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRH-ADQIVVIDKGRVVE-MGTHDELLSKP 693 (716)
T ss_pred CCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhh-ccEEEEEcCCeEEe-cccHHHHhhCc
Confidence 99999999999999999999999999864 4699999999999987 99999999999986 68888888765
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=333.74 Aligned_cols=205 Identities=27% Similarity=0.432 Sum_probs=173.4
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------ceEEEEecc
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------~~i~~v~Q~ 169 (645)
|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQN 80 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecc
Confidence 478999999998889999999999999999999999999999999999999999999997642 369999999
Q ss_pred CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCC
Q 006442 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (645)
Q Consensus 170 ~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (645)
+.++...|+.+|+...+... .......++++.++++.+|+.
T Consensus 81 ~~~~~~~t~~~nl~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~~~~l~ 121 (232)
T cd03300 81 YALFPHLTVFENIAFGLRLK---------------------------------------KLPKAEIKERVAEALDLVQLE 121 (232)
T ss_pred cccCCCCcHHHHHHHHHHhc---------------------------------------CCCHHHHHHHHHHHHHHcCCc
Confidence 98877789999975321100 001112234556778888886
Q ss_pred cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCe
Q 006442 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (645)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d~ 325 (645)
+..++.+.+||||||||++|||||+.+|++|||||||+|||+.+++++.++|++ .|+|||++||+++++.++||+
T Consensus 122 -~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~ 200 (232)
T cd03300 122 -GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDR 200 (232)
T ss_pred -hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCE
Confidence 677888999999999999999999999999999999999999999999987743 389999999999999999999
Q ss_pred EEEEcCceeEEeccChHH
Q 006442 326 IVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 326 i~~l~~G~~~~~~g~~~~ 343 (645)
++++++|++. +.|...+
T Consensus 201 i~~l~~G~~~-~~~~~~~ 217 (232)
T cd03300 201 IAVMNKGKIQ-QIGTPEE 217 (232)
T ss_pred EEEEECCEEE-ecCCHHH
Confidence 9999999984 4455443
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=339.11 Aligned_cols=206 Identities=23% Similarity=0.342 Sum_probs=174.2
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECcee-----cc--------
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-----VL-------- 489 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~-----~~-------- 489 (645)
.+|+++|+++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ +.
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 5 PLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred ceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 47999999999988889999999999999999999999999999999999999999999999976 32
Q ss_pred ------cchhccchhhcCCCCCCHHHHHHhhh---cc----ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHH
Q 006442 490 ------PNYFEQNQAEALDLDKTVLETVAEAA---ED----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK 556 (645)
Q Consensus 490 ------~~~~~q~~~~~l~~~~tv~e~v~~~~---~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAr 556 (645)
.+|++|+....+.+..++.+|+.... .. .....+.++++.+++..+..++++.+|||||||||+|||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~lar 164 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIAR 164 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHH
Confidence 23555554334556678888876421 10 112356788999999544678999999999999999999
Q ss_pred HHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 557 al~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++.++||++++|++|+++. .|..+++.
T Consensus 165 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~-~~~~~~~~ 240 (258)
T PRK11701 165 NLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE-SGLTDQVL 240 (258)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHHh
Confidence 999999999999999999999999999988753 5699999999999999999999999999985 46666554
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=331.82 Aligned_cols=198 Identities=31% Similarity=0.461 Sum_probs=169.8
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC------ceEEEEeccCc
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------MKIAFLSQEFE 171 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~------~~i~~v~Q~~~ 171 (645)
|+++|++++|+++++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++.. ..++|++|++.
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~ 80 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPP 80 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCC
Confidence 478999999998889999999999999999999999999999999999999999999998642 36999999998
Q ss_pred cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcc
Q 006442 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (645)
Q Consensus 172 ~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~ 251 (645)
+++..|+++|+..... +. .. .+.++.++++.+|+. +
T Consensus 81 ~~~~~t~~~~~~~~~~---------------~~------------------------~~----~~~~~~~~l~~~~l~-~ 116 (223)
T TIGR03740 81 LYENLTARENLKVHTT---------------LL------------------------GL----PDSRIDEVLNIVDLT-N 116 (223)
T ss_pred ccccCCHHHHHHHHHH---------------Hc------------------------CC----CHHHHHHHHHHcCCc-H
Confidence 8778899999752110 00 00 013455677888886 5
Q ss_pred cccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCeEEE
Q 006442 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVE 328 (645)
Q Consensus 252 ~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d~i~~ 328 (645)
..++.+.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|+ +.|.|||++|||++++..+||++++
T Consensus 117 ~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~ 196 (223)
T TIGR03740 117 TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGI 196 (223)
T ss_pred HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEE
Confidence 6788899999999999999999999999999999999999999999988874 3578999999999999999999999
Q ss_pred EcCceeEEeccC
Q 006442 329 TEMGVSRTYEGN 340 (645)
Q Consensus 329 l~~G~~~~~~g~ 340 (645)
+++|++. ..|.
T Consensus 197 l~~g~i~-~~~~ 207 (223)
T TIGR03740 197 ISEGVLG-YQGK 207 (223)
T ss_pred EeCCEEE-EecC
Confidence 9999974 3444
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=340.36 Aligned_cols=209 Identities=21% Similarity=0.288 Sum_probs=167.6
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEEcCCC---------
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN--------- 160 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~-----p~~G~I~~~~~~--------- 160 (645)
.++|+++|++++|++..+|+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|..
T Consensus 19 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 19 EHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred CceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 346999999999998889999999999999999999999999999999999864 789999987632
Q ss_pred ---ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHH
Q 006442 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (645)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (645)
..++|++|++.+++ .|++||+...+... . . ......+.
T Consensus 99 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---------------~--~---------------------~~~~~~~~ 139 (268)
T PRK14248 99 NLRREIGMVFQKPNPFP-KSIYNNITHALKYA---------------G--E---------------------RRKSVLDE 139 (268)
T ss_pred HHhccEEEEecCCccCc-ccHHHHHHHHHHhc---------------C--C---------------------CcHHHHHH
Confidence 25999999988765 59999986321100 0 0 00001122
Q ss_pred HHHhhchhcCCCc---ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 006442 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (645)
Q Consensus 238 ~i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIiv 312 (645)
.+.+++..+++.. ...++++.+||||||||++|||||+.+|++|||||||+|||+.+++++.++|++ .+.|||++
T Consensus 140 ~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~ 219 (268)
T PRK14248 140 IVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIV 219 (268)
T ss_pred HHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 3344455555531 345778999999999999999999999999999999999999999999988753 36899999
Q ss_pred ecCHHHHHhhcCeEEEEcCceeEEeccChHH
Q 006442 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
|||++++..+||+++++++|++. +.|..++
T Consensus 220 tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~ 249 (268)
T PRK14248 220 THNMQQALRVSDRTAFFLNGDLV-EYDQTEQ 249 (268)
T ss_pred EeCHHHHHHhCCEEEEEECCEEE-EeCCHHH
Confidence 99999999999999999999984 4465443
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=341.32 Aligned_cols=202 Identities=28% Similarity=0.397 Sum_probs=173.5
Q ss_pred EEEEEeeeeeeC-CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------cch
Q 006442 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNY 492 (645)
Q Consensus 424 ~i~~~~v~~~y~-~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~ 492 (645)
+|+++|+++.|+ ++.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 699999999996 567999999999999999999999999999999999999999999999998752 245
Q ss_pred hccchhhcCCCCCCHHHHHHhhhcc--c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEE
Q 006442 493 FEQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (645)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~v~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 566 (645)
++|+.. ...+..|+.+|+.+.... . ...++..+++.+++. +..++++.+|||||||||+|||||+.+|++||
T Consensus 84 v~q~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~~qrv~laraL~~~p~lll 161 (274)
T PRK13647 84 VFQDPD-DQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMW-DFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIV 161 (274)
T ss_pred EecChh-hhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 566532 223467999999864321 1 124577889999994 67899999999999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHH
Q 006442 567 LDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQV 628 (645)
Q Consensus 567 LDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~ 628 (645)
|||||++||+.++..+.+.|+++ +.|||+||||++++.++|||+++|++|+++.. |+.+.+
T Consensus 162 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~-g~~~~~ 225 (274)
T PRK13647 162 LDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAE-GDKSLL 225 (274)
T ss_pred EECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-CCHHHh
Confidence 99999999999999999999865 46999999999999999999999999999854 555543
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=331.61 Aligned_cols=193 Identities=23% Similarity=0.316 Sum_probs=165.6
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc-------eEEEEec
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-------KIAFLSQ 168 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~-------~i~~v~Q 168 (645)
++|+++|++++|+++++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|... .++|++|
T Consensus 10 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q 89 (214)
T PRK13543 10 PLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGH 89 (214)
T ss_pred ceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeec
Confidence 469999999999888899999999999999999999999999999999999999999999987432 4999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCC
Q 006442 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (645)
Q Consensus 169 ~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (645)
++.+++..|+.||+..... +. ....++.+.+++..+|+
T Consensus 90 ~~~~~~~~t~~e~l~~~~~---------------~~---------------------------~~~~~~~~~~~l~~~~l 127 (214)
T PRK13543 90 LPGLKADLSTLENLHFLCG---------------LH---------------------------GRRAKQMPGSALAIVGL 127 (214)
T ss_pred CcccccCCcHHHHHHHHHH---------------hc---------------------------CCcHHHHHHHHHHHcCC
Confidence 9887777899999752110 00 00112334566777888
Q ss_pred CcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCe
Q 006442 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTK 325 (645)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d~ 325 (645)
. +..++++.+||||||||++||||++.+|++|||||||++||+.+++++.++|+ +.+.|||++|||++++.++||+
T Consensus 128 ~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~ 206 (214)
T PRK13543 128 A-GYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTR 206 (214)
T ss_pred h-hhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcce
Confidence 6 56788899999999999999999999999999999999999999999988874 3589999999999999999999
Q ss_pred EEEEcC
Q 006442 326 IVETEM 331 (645)
Q Consensus 326 i~~l~~ 331 (645)
+++++.
T Consensus 207 i~~l~~ 212 (214)
T PRK13543 207 MLTLEA 212 (214)
T ss_pred EEEEee
Confidence 998863
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=333.96 Aligned_cols=203 Identities=27% Similarity=0.412 Sum_probs=173.5
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---------cchhc
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNYFE 494 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------~~~~~ 494 (645)
+|+++|++++|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~ 80 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVF 80 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeC
Confidence 478999999999888999999999999999999999999999999999999999999999997652 23445
Q ss_pred cchhhcCCCCCCHHHHHHhhhcc--c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEee
Q 006442 495 QNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568 (645)
Q Consensus 495 q~~~~~l~~~~tv~e~v~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 568 (645)
|+ ..+.+..|+.+|+...... . ....+.++++.+|+. +..++++.+||||||||++|||||+.+|++||||
T Consensus 81 q~--~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 157 (236)
T TIGR03864 81 QQ--PTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLA-ERADDKVRELNGGHRRRVEIARALLHRPALLLLD 157 (236)
T ss_pred CC--CCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 44 3455678999998754321 1 123567889999995 6678999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHH
Q 006442 569 EPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSL 631 (645)
Q Consensus 569 EPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~ 631 (645)
|||++||+.+++.+.+.|.++ +.|||+||||++++.. ||++++|++|++.. .++.+++...
T Consensus 158 EP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~-~~~~~~~~~~ 222 (236)
T TIGR03864 158 EPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLA-DGAAAELRGA 222 (236)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEE-eCCHHHHHHH
Confidence 999999999999999998754 4699999999999975 99999999999985 4666665543
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=336.30 Aligned_cols=209 Identities=18% Similarity=0.267 Sum_probs=169.6
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcC---CCC--CccEEEEcCCC----------
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ---EEP--DSGNVIKAKSN---------- 160 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~---~~p--~~G~I~~~~~~---------- 160 (645)
++|+++|+++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|+ ++| ++|+|.++|..
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 469999999999988899999999999999999999999999999999997 455 58999988642
Q ss_pred --ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHH
Q 006442 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (645)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (645)
..++|++|++.++. .|+.+|+...+... .. ......++.
T Consensus 82 ~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~---------------~~-----------------------~~~~~~~~~ 122 (250)
T PRK14245 82 LRKNVGMVFQRPNPFP-KSIFENVAYGLRVN---------------GV-----------------------KDNAFIRQR 122 (250)
T ss_pred HhhheEEEecCCccCc-ccHHHHHHHHHHHc---------------CC-----------------------CcHHHHHHH
Confidence 24999999987765 69999985321100 00 000012234
Q ss_pred HHhhchhcCCCc---ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 006442 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (645)
Q Consensus 239 i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivs 313 (645)
+.++++.+|+.. ...++++.+||||||||++|||||+.+|++|||||||+|||+.+++++.++|++ .++|||++|
T Consensus 123 ~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivt 202 (250)
T PRK14245 123 VEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVT 202 (250)
T ss_pred HHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 556677777742 346778899999999999999999999999999999999999999999988753 478999999
Q ss_pred cCHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
||++++.++||+++++++|++. ..|...+.
T Consensus 203 H~~~~~~~~~d~v~~l~~G~~~-~~~~~~~~ 232 (250)
T PRK14245 203 HNMQQAARVSDKTAFFYMGEMV-EYDDTKKI 232 (250)
T ss_pred CCHHHHHhhCCEEEEEECCEEE-EECCHHHH
Confidence 9999999999999999999984 55655443
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=330.01 Aligned_cols=189 Identities=28% Similarity=0.441 Sum_probs=160.2
Q ss_pred EEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------------ceEEE
Q 006442 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIAF 165 (645)
Q Consensus 100 i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------------~~i~~ 165 (645)
++|+++.|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 80 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGY 80 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeE
Confidence 4799999998889999999999999999999999999999999999999999999988643 25999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchh
Q 006442 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (645)
Q Consensus 166 v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (645)
++|++.+++..|++||+...... . ........+++.++++.
T Consensus 81 ~~q~~~~~~~~t~~e~~~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~ 121 (206)
T TIGR03608 81 LFQNFALIENETVEENLDLGLKY---------------K------------------------KLSKKEKREKKKEALEK 121 (206)
T ss_pred EecchhhccCCcHHHHHHHHHHh---------------c------------------------CCCHHHHHHHHHHHHHH
Confidence 99999887788999998532100 0 00111223456677888
Q ss_pred cCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhh
Q 006442 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (645)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~ 322 (645)
+|+. +..++.+.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||++||+++++ .+
T Consensus 122 ~~l~-~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~ 199 (206)
T TIGR03608 122 VGLN-LKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA-KQ 199 (206)
T ss_pred cCch-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-hh
Confidence 8885 567888999999999999999999999999999999999999999999988753 489999999999976 57
Q ss_pred cCeEEEE
Q 006442 323 CTKIVET 329 (645)
Q Consensus 323 ~d~i~~l 329 (645)
||+++++
T Consensus 200 ~d~i~~l 206 (206)
T TIGR03608 200 ADRVIEL 206 (206)
T ss_pred cCEEEeC
Confidence 9999864
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=366.33 Aligned_cols=248 Identities=23% Similarity=0.380 Sum_probs=183.0
Q ss_pred HHHHhhhhhhHhhhccCchhhhcccccccCCCCCCCCCCccEEEEeEEEEeCCe---eeeeeeeEEEECCcEEEEECCCC
Q 006442 57 KSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGV---TVLKDVTWEVKKGEKVGLVGVNG 133 (645)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~nls~~y~~~---~vL~~vsl~i~~Ge~~~lvG~NG 133 (645)
..+.++..+.+++|+.-++.+..... ....+ . .....|+++||+|.|+.+ ++|+|+||+|++||+||||||||
T Consensus 429 s~lmkgvGAs~rvFel~dr~P~i~~~-G~~~p--~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSG 504 (716)
T KOG0058|consen 429 SELMKGVGASERVFELMDRKPRIPLT-GTLAP--D-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSG 504 (716)
T ss_pred HHHHHhcchHHHHHHHhccCCCCCCC-Ccccc--c-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCC
Confidence 44555556667777665443322221 11111 1 244569999999999876 49999999999999999999999
Q ss_pred ccHHHHHHHHHcCCCCCccEEEEcCCCc----------eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 006442 134 AGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL 203 (645)
Q Consensus 134 sGKSTLl~~l~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~ 203 (645)
+||||+.++|..+|+|++|+|.++|.+. +||+|.|||-+ ++.||+|||..+..+. . .+.+..+-
T Consensus 505 sGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvL-Fs~sI~eNI~YG~~~~-t----~e~i~~AA 578 (716)
T KOG0058|consen 505 SGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVL-FSGSIRENIAYGLDNA-T----DEEIEAAA 578 (716)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeecccee-ecccHHHHHhcCCCCC-C----HHHHHHHH
Confidence 9999999999999999999999998754 59999999987 7899999998655421 0 01111111
Q ss_pred hhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEE
Q 006442 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLL 283 (645)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLL 283 (645)
+.+ ...+++..+.+ |..+..++ ...+||||||||+||||||+++|.||||
T Consensus 579 k~A-Nah~FI~~~p~----------------------------gY~T~VGE-kG~qLSGGQKQRIAIARALlr~P~VLIL 628 (716)
T KOG0058|consen 579 KMA-NAHEFITNFPD----------------------------GYNTVVGE-KGSQLSGGQKQRIAIARALLRNPRVLIL 628 (716)
T ss_pred HHh-ChHHHHHhCcc----------------------------ccccccCC-ccccccchHHHHHHHHHHHhcCCCEEEE
Confidence 110 01112111111 22222332 2689999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcCeEEEEcCceeEEeccChHHHHH
Q 006442 284 DEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (645)
Q Consensus 284 DEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~~~ 346 (645)
||.||+||.++...+.+.|.+ .++|||+|.|++..+.. +|+|+++++|++. -.|++++.+.
T Consensus 629 DEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~-E~G~h~eLl~ 691 (716)
T KOG0058|consen 629 DEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRH-ADQIVVIDKGRVV-EMGTHDELLS 691 (716)
T ss_pred echhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhh-ccEEEEEcCCeEE-ecccHHHHhh
Confidence 999999999999999988853 57999999999999986 8999999999984 4566655443
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=348.07 Aligned_cols=211 Identities=20% Similarity=0.359 Sum_probs=173.2
Q ss_pred CccEEEEeEEEEeC----CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCC---ccEEEEcCCC-------
Q 006442 95 SSGVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVIKAKSN------- 160 (645)
Q Consensus 95 ~~~i~i~nls~~y~----~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~---~G~I~~~~~~------- 160 (645)
.+.|+++|+++.|+ ...+|+||||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+
T Consensus 10 ~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred CceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 45799999999995 256999999999999999999999999999999999999996 9999998753
Q ss_pred -------ceEEEEeccC--ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCC
Q 006442 161 -------MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (645)
Q Consensus 161 -------~~i~~v~Q~~--~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (645)
..|+|++|++ .+.+.+|+.+++...+.. . ....
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~---------------~-----------------------~~~~ 131 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLML---------------H-----------------------KGMS 131 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHH---------------h-----------------------cCCC
Confidence 2599999998 466778998887532100 0 0011
Q ss_pred hhcHHHHHHhhchhcCCCc--ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cC
Q 006442 232 LDTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQ 305 (645)
Q Consensus 232 ~~~~~~~i~~ll~~lgl~~--~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~ 305 (645)
..+..+++.++++.+|++. ...++++.+|||||+|||+|||||+.+|++||+||||++||+.++..+.++|+ +.
T Consensus 132 ~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~ 211 (330)
T PRK09473 132 KAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREF 211 (330)
T ss_pred HHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHc
Confidence 1223345667788888863 23467899999999999999999999999999999999999999999988764 34
Q ss_pred CCeEEEEecCHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 306 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 306 g~tvIivsHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
|.|+|+||||++.+.++||+|++|.+|++. ..|+..+.
T Consensus 212 g~til~iTHdl~~~~~~~Dri~vm~~G~iv-e~g~~~~i 249 (330)
T PRK09473 212 NTAIIMITHDLGVVAGICDKVLVMYAGRTM-EYGNARDV 249 (330)
T ss_pred CCEEEEEECCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 899999999999999999999999999984 45665443
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=340.55 Aligned_cols=208 Identities=22% Similarity=0.352 Sum_probs=173.8
Q ss_pred CcEEEEEeeeeeeCC---------eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---
Q 006442 422 RSVVTIKNLEFGYED---------RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--- 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~---------~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--- 489 (645)
+++|+++||+++|+. +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGD 81 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCc
Confidence 357999999999962 46999999999999999999999999999999999999999999999997653
Q ss_pred -------cchhccchhhcCCCCCCHHHHHHhhhcc---c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHH
Q 006442 490 -------PNYFEQNQAEALDLDKTVLETVAEAAED---W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFC 555 (645)
Q Consensus 490 -------~~~~~q~~~~~l~~~~tv~e~v~~~~~~---~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lA 555 (645)
.+|++|+....+.+..|+.+++...... . ..+.+.++++.+++.....++.+.+|||||||||+||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 161 (267)
T PRK15112 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLA 161 (267)
T ss_pred hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHH
Confidence 2344554322244567888887643211 1 1235778899999954567888999999999999999
Q ss_pred HHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|||+.+|+||||||||++||+.+++.+.+.|.++ +.|||+||||++++..+|||+++|++|++.. .+..+++..
T Consensus 162 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~~ 239 (267)
T PRK15112 162 RALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVE-RGSTADVLA 239 (267)
T ss_pred HHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEe-cCCHHHHhc
Confidence 9999999999999999999999999999998864 5699999999999999999999999999974 566666543
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=337.61 Aligned_cols=202 Identities=26% Similarity=0.430 Sum_probs=173.3
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------------
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------------- 489 (645)
+|+++|+++.|+++.+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 689999999998888999999999999999999999999999999999999999999999987652
Q ss_pred ----cchhccchhhcCCCCCCHHHHHHhhh---ccc----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHH
Q 006442 490 ----PNYFEQNQAEALDLDKTVLETVAEAA---EDW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (645)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~v~~~~---~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral 558 (645)
.+|++|+ ..+.+..|+.+|+.... ... ....+.++++.+++. ...++++.+|||||||||+|||||
T Consensus 83 ~~~~i~~v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~Gq~qrv~la~al 159 (250)
T PRK11264 83 LRQHVGFVFQN--FNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA-GKETSYPRRLSGGQQQRVAIARAL 159 (250)
T ss_pred hhhhEEEEecC--cccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-chhhCChhhCChHHHHHHHHHHHH
Confidence 1233343 34556789999997532 111 123467889999995 567899999999999999999999
Q ss_pred ccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++.++||++++|++|++.. .++.+++.
T Consensus 160 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 232 (250)
T PRK11264 160 AMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVE-QGPAKALF 232 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHHh
Confidence 9999999999999999999999999998764 4699999999999999999999999999985 46766654
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=331.82 Aligned_cols=200 Identities=28% Similarity=0.416 Sum_probs=170.0
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----------cchh
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PNYF 493 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~~~~ 493 (645)
|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV 80 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEe
Confidence 47899999998888999999999999999999999999999999999999999999999997652 2344
Q ss_pred ccchhhcCCCCCCHHHHHHhhhccc----cHHHHHHHHhhc-CCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEee
Q 006442 494 EQNQAEALDLDKTVLETVAEAAEDW----RIDDIKGLLGRC-NFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568 (645)
Q Consensus 494 ~q~~~~~l~~~~tv~e~v~~~~~~~----~~~~~~~~L~~~-~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 568 (645)
+|. ..+.+..|+.+|+....... ....+..+++.+ ++ .+..++++.+|||||||||+|||||+.+|++||||
T Consensus 81 ~q~--~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 157 (222)
T cd03224 81 PEG--RRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRL-KERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLD 157 (222)
T ss_pred ccc--cccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhh-hhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 443 34566789999997653221 123455677777 45 45678999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHH
Q 006442 569 EPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQV 628 (645)
Q Consensus 569 EPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~ 628 (645)
|||++||+.++..+.+.|+++ +.|||++|||++++.++||++++|++|++.. .++.+++
T Consensus 158 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 219 (222)
T cd03224 158 EPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVL-EGTAAEL 219 (222)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEE-eCCHHHH
Confidence 999999999999999999865 4699999999999999999999999999985 4665554
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=329.69 Aligned_cols=190 Identities=35% Similarity=0.515 Sum_probs=163.0
Q ss_pred EEEeeeeeeCC--eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------cchh
Q 006442 426 TIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYF 493 (645)
Q Consensus 426 ~~~~v~~~y~~--~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~~ 493 (645)
+++|+++.|++ +.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 46899999987 78999999999999999999999999999999999999999999999997652 1344
Q ss_pred ccchhhcCCCCCCHHHHHHhhhcc--c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEe
Q 006442 494 EQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567 (645)
Q Consensus 494 ~q~~~~~l~~~~tv~e~v~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 567 (645)
+|... ...+..|+.+|+...... . ....+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||
T Consensus 81 ~q~~~-~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~llll 158 (211)
T cd03225 81 FQNPD-DQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLE-GLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLL 158 (211)
T ss_pred ecChh-hhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 44421 123568999998764321 1 123567889999995 667899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCe
Q 006442 568 DEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSN 617 (645)
Q Consensus 568 DEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~ 617 (645)
||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+
T Consensus 159 DEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 159 DEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999865 3599999999999999999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=330.37 Aligned_cols=191 Identities=28% Similarity=0.434 Sum_probs=166.0
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc------------cch
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------PNY 492 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------~~~ 492 (645)
|+++|+++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGM 80 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceE
Confidence 47899999998888999999999999999999999999999999999999999999999998752 123
Q ss_pred hccchhhcCCCCCCHHHHHHhhhc---cc----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeE
Q 006442 493 FEQNQAEALDLDKTVLETVAEAAE---DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (645)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~v~~~~~---~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 565 (645)
++|+ ..+.+..|+.+|+..... .. ....+.++++.+++. +..++++.+|||||||||+|||||+.+|++|
T Consensus 81 ~~q~--~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 157 (213)
T cd03262 81 VFQQ--FNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLA-DKADAYPAQLSGGQQQRVAIARALAMNPKVM 157 (213)
T ss_pred Eecc--cccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhhCccccCHHHHHHHHHHHHHhcCCCEE
Confidence 4443 345567899999876421 11 123567889999994 5679999999999999999999999999999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeE
Q 006442 566 VLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNL 618 (645)
Q Consensus 566 lLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i 618 (645)
||||||+|||+.+++.+.+.|+++ +.|||++|||++++.++||++++|++|++
T Consensus 158 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 158 LFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999865 46999999999999999999999999874
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=332.45 Aligned_cols=193 Identities=30% Similarity=0.475 Sum_probs=166.1
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCC-----CCCeeEEEECceecc----------
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE-----KPRGGEVLLGEHNVL---------- 489 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~-----~p~~G~i~~~g~~~~---------- 489 (645)
|+++|+++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|++ +|++|+|.++|.++.
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR 80 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence 47899999998888999999999999999999999999999999999999 999999999998752
Q ss_pred --cchhccchhhcCCCCCCHHHHHHhhhcc---c----cHHHHHHHHhhcCCChhhhccC--cCcCCHhHHHHHHHHHHH
Q 006442 490 --PNYFEQNQAEALDLDKTVLETVAEAAED---W----RIDDIKGLLGRCNFKADMLDRK--VSLLSGGEKARLAFCKFM 558 (645)
Q Consensus 490 --~~~~~q~~~~~l~~~~tv~e~v~~~~~~---~----~~~~~~~~L~~~~l~~~~~~~~--~~~LSgGqkqrv~lAral 558 (645)
.+|++|+ ..+. ..|+.+|+...... . ...++..+++.+++. +..+++ +.+|||||||||+|||||
T Consensus 81 ~~i~~~~q~--~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~LSgG~~qrv~la~al 156 (227)
T cd03260 81 RRVGMVFQK--PNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALW-DEVKDRLHALGLSGGQQQRLCLARAL 156 (227)
T ss_pred hhEEEEecC--chhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCC-hHHhccCCcccCCHHHHHHHHHHHHH
Confidence 1244443 2344 78999999764321 1 124577889999995 445555 599999999999999999
Q ss_pred ccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhCCEEEEEeCCeEEee
Q 006442 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQDY 621 (645)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~ 621 (645)
+.+|++|||||||++||+.++..+.+.|+++. .|||++|||++++.++||++++|++|+++..
T Consensus 157 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 221 (227)
T cd03260 157 ANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEF 221 (227)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence 99999999999999999999999999998763 5999999999999999999999999999854
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=339.49 Aligned_cols=205 Identities=25% Similarity=0.446 Sum_probs=173.6
Q ss_pred EEEEEeeeeeeC---------CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----
Q 006442 424 VVTIKNLEFGYE---------DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~---------~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----- 489 (645)
+|+++||++.|+ ++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 589999999995 367999999999999999999999999999999999999999999999997652
Q ss_pred --------cchhccchhhcCCCCCCHHHHHHhhhc---c----ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHH
Q 006442 490 --------PNYFEQNQAEALDLDKTVLETVAEAAE---D----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF 554 (645)
Q Consensus 490 --------~~~~~q~~~~~l~~~~tv~e~v~~~~~---~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~l 554 (645)
.+|++|+....+.+..|+.+|+..... . ...+++.++++.+++.....++++.+|||||||||+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 234444432235567899999864321 1 1134577899999995456789999999999999999
Q ss_pred HHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 162 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 239 (265)
T TIGR02769 162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE-ECDVAQLL 239 (265)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE-ECCHHHHc
Confidence 99999999999999999999999999999998754 5699999999999999999999999999985 46666654
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=351.79 Aligned_cols=198 Identities=26% Similarity=0.412 Sum_probs=168.8
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------------ce
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MK 162 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------------~~ 162 (645)
+|++ |++++|++..+ |+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..
T Consensus 1 ~l~~-~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 1 MLEL-NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred CeEE-EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence 3777 99999987543 8999999999999999999999999999999999999999987632 25
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhh
Q 006442 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (645)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (645)
++|++|++.+++.+||+||+...+.. ...+++.++
T Consensus 78 i~~v~q~~~l~~~~tv~enl~~~~~~---------------------------------------------~~~~~~~~~ 112 (352)
T PRK11144 78 IGYVFQDARLFPHYKVRGNLRYGMAK---------------------------------------------SMVAQFDKI 112 (352)
T ss_pred EEEEcCCcccCCCCcHHHHHHhhhhh---------------------------------------------hhHHHHHHH
Confidence 99999999988899999998532110 012345567
Q ss_pred chhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHH
Q 006442 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (645)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~ 318 (645)
++.+|+. +..++.+.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .|.|||+||||+++
T Consensus 113 l~~~gl~-~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~ 191 (352)
T PRK11144 113 VALLGIE-PLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDE 191 (352)
T ss_pred HHHcCCc-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Confidence 7888886 578899999999999999999999999999999999999999999999887742 48999999999999
Q ss_pred HHhhcCeEEEEcCceeEEeccChHHH
Q 006442 319 LDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 319 l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
+..+||+|++|++|++. ..|+..+.
T Consensus 192 ~~~~~d~i~~l~~G~i~-~~g~~~~i 216 (352)
T PRK11144 192 ILRLADRVVVLEQGKVK-AFGPLEEV 216 (352)
T ss_pred HHHhCCEEEEEeCCEEE-EecCHHHH
Confidence 99999999999999984 44554443
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=336.07 Aligned_cols=207 Identities=20% Similarity=0.293 Sum_probs=167.4
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEEcCCC-----------
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN----------- 160 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~-----p~~G~I~~~~~~----------- 160 (645)
+|+++|++|+|+++++|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~ 83 (251)
T PRK14251 4 IISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVEL 83 (251)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHh
Confidence 5899999999998889999999999999999999999999999999999987 479999987642
Q ss_pred -ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHH
Q 006442 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (645)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (645)
..++|++|++.++. .|++||+...+... .. ......++++
T Consensus 84 ~~~i~~~~q~~~~~~-~tv~enl~~~~~~~---------------~~-----------------------~~~~~~~~~~ 124 (251)
T PRK14251 84 RKEVGMVFQQPTPFP-FSVYDNVAYGLKIA---------------GV-----------------------KDKELIDQRV 124 (251)
T ss_pred hccEEEEecCCccCC-CcHHHHHHHHHHHc---------------CC-----------------------CCHHHHHHHH
Confidence 24999999988764 79999985321100 00 0000112234
Q ss_pred HhhchhcCCC---cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 006442 240 SKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (645)
Q Consensus 240 ~~ll~~lgl~---~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsH 314 (645)
.++++.+++. ....++.+.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||++||
T Consensus 125 ~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH 204 (251)
T PRK14251 125 EESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTH 204 (251)
T ss_pred HHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 4555666662 1345778899999999999999999999999999999999999999999888754 3689999999
Q ss_pred CHHHHHhhcCeEEEEcCceeEEeccChHH
Q 006442 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 315 d~~~l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
+++++.++||+|+++++|++. ..|...+
T Consensus 205 ~~~~~~~~~d~i~~l~~G~i~-~~~~~~~ 232 (251)
T PRK14251 205 NLQQAGRISDQTAFLMNGDLI-EAGPTEE 232 (251)
T ss_pred CHHHHHhhcCEEEEEECCEEE-EeCCHHH
Confidence 999999999999999999984 3354433
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=328.69 Aligned_cols=192 Identities=27% Similarity=0.387 Sum_probs=167.3
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---------cchhcc
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNYFEQ 495 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------~~~~~q 495 (645)
|+++|++++|+++++|+++||+|++| +++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 79 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQ 79 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecC
Confidence 47899999998888999999999999 99999999999999999999999999999999997642 234444
Q ss_pred chhhcCCCCCCHHHHHHhhhcc------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeC
Q 006442 496 NQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (645)
Q Consensus 496 ~~~~~l~~~~tv~e~v~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 569 (645)
+ ..+++..|+.+|+...... ...+.+..+++.+++. +..++++.+|||||||||+|||||+.+|++|||||
T Consensus 80 ~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 156 (211)
T cd03264 80 E--FGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLG-DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDE 156 (211)
T ss_pred C--CcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCH-HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 4 3455678999998754211 1124577889999994 66789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEe
Q 006442 570 PTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (645)
Q Consensus 570 Pt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~ 620 (645)
||++||+.+++.+.+.|+++ +.|||+||||++++.++|||+++|++|++..
T Consensus 157 Pt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~ 209 (211)
T cd03264 157 PTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVF 209 (211)
T ss_pred CcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999876 4699999999999999999999999999874
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=329.63 Aligned_cols=191 Identities=29% Similarity=0.391 Sum_probs=165.2
Q ss_pred EEEEeeeeeeCC-eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-------------c
Q 006442 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------P 490 (645)
Q Consensus 425 i~~~~v~~~y~~-~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------------~ 490 (645)
|+++|+++.|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 478999999974 67999999999999999999999999999999999999999999999998652 1
Q ss_pred chhccchhhcCCCCCCHHHHHHhhhcc--c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCe
Q 006442 491 NYFEQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (645)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~v~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 564 (645)
+|++|+ ..+.+..|+.+|+...... . ..+.+..+++.+++. +..++++.+||||||||++|||||+.+|++
T Consensus 81 ~~v~q~--~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~l 157 (214)
T cd03292 81 GVVFQD--FRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLS-HKHRALPAELSGGEQQRVAIARAIVNSPTI 157 (214)
T ss_pred EEEecC--chhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCChhhcCHHHHHHHHHHHHHHcCCCE
Confidence 233443 3456678999999765321 1 123567889999994 567899999999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeE
Q 006442 565 LVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNL 618 (645)
Q Consensus 565 LlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i 618 (645)
|||||||++||+.++..+.+.|+++ +.|||+||||++++.++||++++|++|++
T Consensus 158 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 158 LIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999865 46999999999999999999999999874
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=347.88 Aligned_cols=214 Identities=21% Similarity=0.291 Sum_probs=172.0
Q ss_pred cEEEEeEEEEeC----CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC----CCccEEEEcCCC--------
Q 006442 97 GVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE----PDSGNVIKAKSN-------- 160 (645)
Q Consensus 97 ~i~i~nls~~y~----~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~----p~~G~I~~~~~~-------- 160 (645)
+|+++|++++|+ ...+|+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 589999999993 4579999999999999999999999999999999999987 589999998742
Q ss_pred ------ceEEEEeccCc--cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCCh
Q 006442 161 ------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (645)
Q Consensus 161 ------~~i~~v~Q~~~--~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (645)
..|+|++|++. +.+..||.+++...+... . .... + ....
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~-~-----------~~~~------------------~---~~~~ 129 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGW-T-----------YKGR------------------W---WQRF 129 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhh-h-----------cccc------------------c---cccH
Confidence 25999999985 445678988875211000 0 0000 0 0000
Q ss_pred hcHHHHHHhhchhcCCCc--ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CC
Q 006442 233 DTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QD 306 (645)
Q Consensus 233 ~~~~~~i~~ll~~lgl~~--~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g 306 (645)
....+++.++|+.+|+.. ...++++.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|++ .|
T Consensus 130 ~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g 209 (330)
T PRK15093 130 GWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNN 209 (330)
T ss_pred HHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 122356778899999963 246788999999999999999999999999999999999999999999888753 48
Q ss_pred CeEEEEecCHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 307 VPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 307 ~tvIivsHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
.|||+||||++++.++||+|++|.+|++ ...|+..++
T Consensus 210 ~tii~itHdl~~v~~~~dri~vm~~G~i-ve~g~~~~i 246 (330)
T PRK15093 210 TTILLISHDLQMLSQWADKINVLYCGQT-VETAPSKEL 246 (330)
T ss_pred CEEEEEECCHHHHHHhCCEEEEEECCEE-EEECCHHHH
Confidence 9999999999999999999999999998 445654443
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=335.29 Aligned_cols=208 Identities=22% Similarity=0.279 Sum_probs=167.6
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCC--CC---CccEEEEcCCC-----------
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EP---DSGNVIKAKSN----------- 160 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~--~p---~~G~I~~~~~~----------- 160 (645)
+|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+. +| ++|+|.++|..
T Consensus 5 ~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 84 (252)
T PRK14239 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDL 84 (252)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhh
Confidence 699999999999888999999999999999999999999999999999985 36 59999988632
Q ss_pred -ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHH
Q 006442 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (645)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (645)
..++|++|++.++. .|+.||+...... ... ......+..+
T Consensus 85 ~~~i~~v~q~~~~~~-~tv~enl~~~~~~---------------~~~-----------------------~~~~~~~~~~ 125 (252)
T PRK14239 85 RKEIGMVFQQPNPFP-MSIYENVVYGLRL---------------KGI-----------------------KDKQVLDEAV 125 (252)
T ss_pred hhcEEEEecCCccCc-CcHHHHHHHHHHH---------------cCC-----------------------CcHHHHHHHH
Confidence 25999999988765 8999998532110 000 0000112334
Q ss_pred HhhchhcCCCc---ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 006442 240 SKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (645)
Q Consensus 240 ~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsH 314 (645)
.++++.+++.. +..++.+.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|++ .++|||++||
T Consensus 126 ~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH 205 (252)
T PRK14239 126 EKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTR 205 (252)
T ss_pred HHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEEC
Confidence 45555666531 345778899999999999999999999999999999999999999999988753 3689999999
Q ss_pred CHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 315 d~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
+++++..+||+|+++++|++. +.|...+.
T Consensus 206 ~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 234 (252)
T PRK14239 206 SMQQASRISDRTGFFLDGDLI-EYNDTKQM 234 (252)
T ss_pred CHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999984 45654443
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=336.83 Aligned_cols=210 Identities=20% Similarity=0.279 Sum_probs=169.4
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC--C---CccEEEEcCCC---------
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--P---DSGNVIKAKSN--------- 160 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~--p---~~G~I~~~~~~--------- 160 (645)
.++|+++|+++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.+
T Consensus 10 ~~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 10 QEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred CceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 346999999999998889999999999999999999999999999999999987 3 59999987642
Q ss_pred ---ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHH
Q 006442 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (645)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (645)
..++|++|++.+++ .|++||+...... .. .........
T Consensus 90 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~---------------~~-----------------------~~~~~~~~~ 130 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFP-QSIFDNVAYGPRI---------------HG-----------------------TKNKKKLQE 130 (259)
T ss_pred HHhhceEEEecCCcccc-cCHHHHHHhHHHh---------------cC-----------------------CCCHHHHHH
Confidence 24999999988765 4999998521100 00 000011223
Q ss_pred HHHhhchhcCCCc---ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 006442 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (645)
Q Consensus 238 ~i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIiv 312 (645)
++.++++.+|+.. +..++.+.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++ .++|||+|
T Consensus 131 ~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiv 210 (259)
T PRK14274 131 IVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIV 210 (259)
T ss_pred HHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 3445666666632 345778899999999999999999999999999999999999999999888753 36899999
Q ss_pred ecCHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
||+++++.++||+++++++|++. ..|+.+++
T Consensus 211 tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 241 (259)
T PRK14274 211 THNMQQAARVSDQTAFFYMGELV-ECNDTNKM 241 (259)
T ss_pred EcCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 99999999999999999999984 45665543
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=337.19 Aligned_cols=202 Identities=25% Similarity=0.394 Sum_probs=174.6
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC---eeEEEECceecc----------
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR---GGEVLLGEHNVL---------- 489 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~---------- 489 (645)
++|+++||++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.
T Consensus 3 ~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (262)
T PRK09984 3 TIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82 (262)
T ss_pred cEEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHH
Confidence 4799999999999889999999999999999999999999999999999999886 499999997652
Q ss_pred -----cchhccchhhcCCCCCCHHHHHHhhhc--------------cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHH
Q 006442 490 -----PNYFEQNQAEALDLDKTVLETVAEAAE--------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKA 550 (645)
Q Consensus 490 -----~~~~~q~~~~~l~~~~tv~e~v~~~~~--------------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkq 550 (645)
.+|++|+ ..+++..|+.+|+..... .....++.++++.+++. +..++++.+|||||||
T Consensus 83 ~~~~~i~~~~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~q 159 (262)
T PRK09984 83 KSRANTGYIFQQ--FNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMV-HFAHQRVSTLSGGQQQ 159 (262)
T ss_pred HHHhheEEEccc--cccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCH-HHHhCCccccCHHHHH
Confidence 1344444 345667899999975421 01124578899999994 6789999999999999
Q ss_pred HHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChh
Q 006442 551 RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626 (645)
Q Consensus 551 rv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~ 626 (645)
||+|||||+.+|+||||||||++||+.+++.+.+.|+++ +.|||+||||++++..+||++++|++|++.. .|+++
T Consensus 160 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~-~g~~~ 238 (262)
T PRK09984 160 RVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFY-DGSSQ 238 (262)
T ss_pred HHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHH
Confidence 999999999999999999999999999999999999865 4699999999999999999999999999974 57777
Q ss_pred HH
Q 006442 627 QV 628 (645)
Q Consensus 627 ~~ 628 (645)
++
T Consensus 239 ~~ 240 (262)
T PRK09984 239 QF 240 (262)
T ss_pred Hh
Confidence 76
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=334.09 Aligned_cols=202 Identities=26% Similarity=0.360 Sum_probs=173.7
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------------
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------------- 489 (645)
+|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 488999999998888999999999999999999999999999999999999999999999998651
Q ss_pred --cchhccchhhcCCCCCCHHHHHHhhh-c---c---ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHcc
Q 006442 490 --PNYFEQNQAEALDLDKTVLETVAEAA-E---D---WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560 (645)
Q Consensus 490 --~~~~~q~~~~~l~~~~tv~e~v~~~~-~---~---~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~ 560 (645)
.+|++|+ ..+++..|+.+|+.... . . .....+.++++.+|+. ...++++.+||||||||++|||||+.
T Consensus 82 ~~i~~~~q~--~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~ 158 (242)
T PRK11124 82 RNVGMVFQQ--YNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLK-PYADRFPLHLSGGQQQRVAIARALMM 158 (242)
T ss_pred hheEEEecC--ccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 1244443 34566789999986421 1 1 1123577889999994 67799999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 561 ~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
+|++|||||||++||+.++..+.+.|++. +.|||+||||.+++.++||++++|++|++.. .++.+++.
T Consensus 159 ~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~-~~~~~~~~ 229 (242)
T PRK11124 159 EPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVE-QGDASCFT 229 (242)
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHhc
Confidence 99999999999999999999999999864 5699999999999999999999999999985 57776653
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-40 Score=334.10 Aligned_cols=208 Identities=23% Similarity=0.309 Sum_probs=169.9
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC---CCccEEEEcCCC----------ceE
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE---PDSGNVIKAKSN----------MKI 163 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~---p~~G~I~~~~~~----------~~i 163 (645)
+|+++|+++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+ ..|
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i 81 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNV 81 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhE
Confidence 4899999999998889999999999999999999999999999999999974 689999998743 259
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhc
Q 006442 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (645)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (645)
+|++|++.++. .|++||+...... .... -.....+.++.+++
T Consensus 82 ~~~~q~~~l~~-~tv~eni~~~~~~---------------~~~~----------------------~~~~~~~~~~~~~l 123 (246)
T PRK14269 82 GMVFQQPNVFV-KSIYENISYAPKL---------------HGMI----------------------KNKDEEEALVVDCL 123 (246)
T ss_pred EEEecCCcccc-ccHHHHhhhHHhh---------------cCcc----------------------cChHHHHHHHHHHH
Confidence 99999998765 7999998532100 0000 00011233455677
Q ss_pred hhcCCCc---ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHH
Q 006442 244 PELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAF 318 (645)
Q Consensus 244 ~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~ 318 (645)
+.+|+.+ ...++.+.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|++ .++|||++||++++
T Consensus 124 ~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~ 203 (246)
T PRK14269 124 QKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQ 203 (246)
T ss_pred HHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 7777742 245777899999999999999999999999999999999999999999988753 48899999999999
Q ss_pred HHhhcCeEEEEcCceeEEeccChHH
Q 006442 319 LDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 319 l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
+..+||+++++++|++. ..|...+
T Consensus 204 ~~~~~d~i~~l~~G~i~-~~g~~~~ 227 (246)
T PRK14269 204 GKRVADYTAFFHLGELI-EFGESKE 227 (246)
T ss_pred HHhhCcEEEEEECCEEE-EECCHHH
Confidence 99999999999999984 4455443
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=329.00 Aligned_cols=196 Identities=26% Similarity=0.371 Sum_probs=165.9
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------ceEEEEecc
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------~~i~~v~Q~ 169 (645)
++++|++++|+. .+.|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 ~~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (213)
T TIGR01277 1 LALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQE 78 (213)
T ss_pred CeEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEecc
Confidence 468999999974 5789999999999999999999999999999999999999999998743 259999999
Q ss_pred CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCC
Q 006442 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (645)
Q Consensus 170 ~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (645)
+.+++..|+.||+...+.... ......++++.++++.+|+.
T Consensus 79 ~~~~~~~t~~en~~~~~~~~~---------------------------------------~~~~~~~~~~~~~l~~~~l~ 119 (213)
T TIGR01277 79 NNLFAHLTVRQNIGLGLHPGL---------------------------------------KLNAEQQEKVVDAAQQVGIA 119 (213)
T ss_pred CccCCCCcHHHHHHhHhhccC---------------------------------------CccHHHHHHHHHHHHHcCcH
Confidence 988778899999853211000 00001133456678888885
Q ss_pred cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCe
Q 006442 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (645)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d~ 325 (645)
+..++.+.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++ .+.|||+|||+.+++.++||+
T Consensus 120 -~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~ 198 (213)
T TIGR01277 120 -DYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQ 198 (213)
T ss_pred -HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCe
Confidence 567888999999999999999999999999999999999999999999887743 478999999999999999999
Q ss_pred EEEEcCceeE
Q 006442 326 IVETEMGVSR 335 (645)
Q Consensus 326 i~~l~~G~~~ 335 (645)
++++++|++.
T Consensus 199 v~~l~~g~i~ 208 (213)
T TIGR01277 199 IAVVSQGKIK 208 (213)
T ss_pred EEEEECCeEE
Confidence 9999999874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=332.90 Aligned_cols=205 Identities=30% Similarity=0.428 Sum_probs=172.6
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------ceEEEEecc
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------~~i~~v~Q~ 169 (645)
|+++|++++|++. +|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 l~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~ 79 (235)
T cd03299 1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQN 79 (235)
T ss_pred CeeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeec
Confidence 4789999999865 8999999999999999999999999999999999999999999998642 269999999
Q ss_pred CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCC
Q 006442 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (645)
Q Consensus 170 ~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (645)
+.+++..|+.||+...+.. .........+.+.++++.+|+.
T Consensus 80 ~~~~~~~t~~e~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~~~l~ 120 (235)
T cd03299 80 YALFPHMTVYKNIAYGLKK---------------------------------------RKVDKKEIERKVLEIAEMLGID 120 (235)
T ss_pred CccCCCccHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHHcCCh
Confidence 8887788999998532110 0001112334556778888885
Q ss_pred cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCe
Q 006442 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (645)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d~ 325 (645)
+..++.+.+||||||||++|||||+.+|++|||||||+|||+.+++++.+.|++ .+.|||++||+++++.++||+
T Consensus 121 -~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~ 199 (235)
T cd03299 121 -HLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADK 199 (235)
T ss_pred -hHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 677888999999999999999999999999999999999999999999988753 389999999999999999999
Q ss_pred EEEEcCceeEEeccChHHH
Q 006442 326 IVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 326 i~~l~~G~~~~~~g~~~~~ 344 (645)
++++++|++. ..|+.++.
T Consensus 200 i~~l~~G~i~-~~~~~~~~ 217 (235)
T cd03299 200 VAIMLNGKLI-QVGKPEEV 217 (235)
T ss_pred EEEEECCEEE-EecCHHHH
Confidence 9999999874 45655443
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-40 Score=330.60 Aligned_cols=194 Identities=28% Similarity=0.406 Sum_probs=166.7
Q ss_pred cEEEEEeeeeeeCC----eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---------
Q 006442 423 SVVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (645)
Q Consensus 423 ~~i~~~~v~~~y~~----~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------- 489 (645)
++|+++|++++|++ .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 57999999999975 35999999999999999999999999999999999999999999999997652
Q ss_pred -----cchhccchhhcCCCCCCHHHHHHhhhc------cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHH
Q 006442 490 -----PNYFEQNQAEALDLDKTVLETVAEAAE------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (645)
Q Consensus 490 -----~~~~~q~~~~~l~~~~tv~e~v~~~~~------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral 558 (645)
.+|++|+ ..+.+..|+.+|+..... ....+++.++++.+++. +..++++..||||||||++|||||
T Consensus 85 ~~~~~i~~~~q~--~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrl~la~al 161 (228)
T PRK10584 85 LRAKHVGFVFQS--FMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLG-KRLDHLPAQLSGGEQQRVALARAF 161 (228)
T ss_pred HHhheEEEEEcc--cccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCChhhCCHHHHHHHHHHHHH
Confidence 1233433 345567899999875421 11234578899999995 667899999999999999999999
Q ss_pred ccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEe
Q 006442 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (645)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~ 620 (645)
+.+|++|||||||+|||+.+++.+.+.|+++ +.|||++|||++++.. ||++++|++|++.+
T Consensus 162 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~~g~i~~ 226 (228)
T PRK10584 162 NGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQLQE 226 (228)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEECCEEEe
Confidence 9999999999999999999999999999754 4699999999999865 99999999999864
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-40 Score=334.69 Aligned_cols=207 Identities=20% Similarity=0.304 Sum_probs=166.3
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEEcCCC-----------
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN----------- 160 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p-----~~G~I~~~~~~----------- 160 (645)
.|+++|+++.|+++++++|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|..
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL 82 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHH
Confidence 48999999999888899999999999999999999999999999999998763 69999988632
Q ss_pred -ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHH
Q 006442 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (645)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (645)
..++|++|++.++. .|+.+|+...... .. ..+....++.+
T Consensus 83 ~~~i~~~~q~~~~~~-~t~~~ni~~~~~~---------------~~-----------------------~~~~~~~~~~~ 123 (250)
T PRK14240 83 RKRVGMVFQQPNPFP-MSIYDNVAYGPRT---------------HG-----------------------IKDKKKLDEIV 123 (250)
T ss_pred hccEEEEecCCccCc-ccHHHHHHHHHHh---------------cC-----------------------CCCHHHHHHHH
Confidence 25999999987765 8999998532100 00 00000122334
Q ss_pred HhhchhcCCCc---ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 006442 240 SKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (645)
Q Consensus 240 ~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsH 314 (645)
.++++.+++.. ...++++.+||||||||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|||++||
T Consensus 124 ~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH 203 (250)
T PRK14240 124 EKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTH 203 (250)
T ss_pred HHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEe
Confidence 44555555421 345778899999999999999999999999999999999999999999888753 3789999999
Q ss_pred CHHHHHhhcCeEEEEcCceeEEeccChHH
Q 006442 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 315 d~~~l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
+++++.++||+++++++|++. ..|..++
T Consensus 204 ~~~~~~~~~d~v~~l~~G~i~-~~~~~~~ 231 (250)
T PRK14240 204 NMQQASRISDKTAFFLNGEIV-EFGDTVD 231 (250)
T ss_pred CHHHHHhhCCEEEEEECCEEE-EeCCHHH
Confidence 999999999999999999984 4455443
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=329.12 Aligned_cols=192 Identities=30% Similarity=0.452 Sum_probs=162.9
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------------ceE
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKI 163 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------------~~i 163 (645)
+++ |++|+|++..+ |+||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.. ..+
T Consensus 2 ~~~-~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 77 (214)
T cd03297 2 LCV-DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKI 77 (214)
T ss_pred cee-eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcE
Confidence 445 99999998766 99999999 9999999999999999999999999999999987632 259
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhc
Q 006442 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (645)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (645)
+|++|++.+++..|+.+|+...... ......++++.+++
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~-----------------------------------------~~~~~~~~~~~~~l 116 (214)
T cd03297 78 GLVFQQYALFPHLNVRENLAFGLKR-----------------------------------------KRNREDRISVDELL 116 (214)
T ss_pred EEEecCCccCCCCCHHHHHHHHHhh-----------------------------------------CCHHHHHHHHHHHH
Confidence 9999999887888999998522100 00001123456677
Q ss_pred hhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHH
Q 006442 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFL 319 (645)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l 319 (645)
+.+|+. ...++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|++ .|+|||++|||++++
T Consensus 117 ~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 195 (214)
T cd03297 117 DLLGLD-HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEA 195 (214)
T ss_pred HHcCCH-hHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHH
Confidence 888886 567888999999999999999999999999999999999999999999987743 388999999999999
Q ss_pred HhhcCeEEEEcCceeE
Q 006442 320 DQLCTKIVETEMGVSR 335 (645)
Q Consensus 320 ~~~~d~i~~l~~G~~~ 335 (645)
..+||+++++++|++.
T Consensus 196 ~~~~d~i~~l~~G~i~ 211 (214)
T cd03297 196 EYLADRIVVMEDGRLQ 211 (214)
T ss_pred HHhcCEEEEEECCEEE
Confidence 9999999999999863
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=340.50 Aligned_cols=203 Identities=25% Similarity=0.341 Sum_probs=171.1
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc------------cc
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------PN 491 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------~~ 491 (645)
||+++|++++|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 488999999998888999999999999999999999999999999999999999999999998752 12
Q ss_pred hhccchhhcCCCCCCHHHHHHhhhcc--cc----HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeE
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 565 (645)
|++|+.. ...+..++.+|+...... .. ...+..+++.+++ .+..++++.+||||||||++|||||+.+|++|
T Consensus 81 ~v~q~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSgG~~qrl~laraL~~~p~ll 158 (271)
T PRK13638 81 TVFQDPE-QQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDA-QHFRHQPIQCLSHGQKKRVAIAGALVLQARYL 158 (271)
T ss_pred EEeeChh-hccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HhHhcCCchhCCHHHHHHHHHHHHHHcCCCEE
Confidence 4444321 122345788888653211 11 2346678999998 46678999999999999999999999999999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 566 VLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 566 lLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
||||||++||+.++..+.++|.++ +.|||+||||++++..+||++++|++|++.. .|..+++.
T Consensus 159 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 224 (271)
T PRK13638 159 LLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILT-HGAPGEVF 224 (271)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 999999999999999999999865 4699999999999999999999999999985 46665553
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=338.22 Aligned_cols=210 Identities=23% Similarity=0.332 Sum_probs=170.5
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEEcCCC---------
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN--------- 160 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p-----~~G~I~~~~~~--------- 160 (645)
.+.|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 19 ~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 19 APAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred CcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 4579999999999988999999999999999999999999999999999999985 79999987632
Q ss_pred --ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHH
Q 006442 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (645)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (645)
..++|++|++.+++ .|+++|+...+... . ..........
T Consensus 99 ~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--------------~------------------------~~~~~~~~~~ 139 (276)
T PRK14271 99 FRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--------------K------------------------LVPRKEFRGV 139 (276)
T ss_pred HhhheEEeccCCccCC-ccHHHHHHHHHHhc--------------c------------------------CCCHHHHHHH
Confidence 25999999988765 89999985321100 0 0001112233
Q ss_pred HHhhchhcCCCc---ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 006442 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (645)
Q Consensus 239 i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivs 313 (645)
+.++++.+|+.. +..++.+.+||||||||++|||||+.+|+||||||||++||+.+++++.++|++ .+.|||++|
T Consensus 140 ~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivs 219 (276)
T PRK14271 140 AQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVT 219 (276)
T ss_pred HHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 445666667642 235677899999999999999999999999999999999999999999988753 258999999
Q ss_pred cCHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
|+++++.++||+++++++|++. ..|...++
T Consensus 220 H~~~~~~~~~dri~~l~~G~i~-~~g~~~~~ 249 (276)
T PRK14271 220 HNLAQAARISDRAALFFDGRLV-EEGPTEQL 249 (276)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999874 44554443
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=330.30 Aligned_cols=195 Identities=27% Similarity=0.397 Sum_probs=163.0
Q ss_pred cEEEEeEEEEeCC-------eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEc--CC--C-----
Q 006442 97 GVKLENISKSYKG-------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA--KS--N----- 160 (645)
Q Consensus 97 ~i~i~nls~~y~~-------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~--~~--~----- 160 (645)
+|+++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++ |. +
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 3789999999962 469999999999999999999999999999999999999999999986 31 1
Q ss_pred ---------ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCC
Q 006442 161 ---------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (645)
Q Consensus 161 ---------~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (645)
..++|++|++.+++..|+.||+...+.. . ...
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~---------------~------------------------~~~ 121 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLE---------------R------------------------GVP 121 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHH---------------c------------------------CCC
Confidence 2599999999888889999998532100 0 000
Q ss_pred hhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCe
Q 006442 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVP 308 (645)
Q Consensus 232 ~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~t 308 (645)
.....+++.++++.+|+.....++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|++ .|+|
T Consensus 122 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~t 201 (224)
T TIGR02324 122 REAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAA 201 (224)
T ss_pred HHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCE
Confidence 1112345567788888864455788999999999999999999999999999999999999999999988753 5899
Q ss_pred EEEEecCHHHHHhhcCeEEEEc
Q 006442 309 MVIISHDRAFLDQLCTKIVETE 330 (645)
Q Consensus 309 vIivsHd~~~l~~~~d~i~~l~ 330 (645)
||++||+.+++..+||+++.+.
T Consensus 202 ii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 202 LIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred EEEEeCCHHHHHHhcceeEecC
Confidence 9999999999999999998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=340.49 Aligned_cols=206 Identities=25% Similarity=0.393 Sum_probs=170.9
Q ss_pred ccEEEEeEEEEeC--CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceE
Q 006442 96 SGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (645)
Q Consensus 96 ~~i~i~nls~~y~--~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i 163 (645)
.+|+++|++++|+ ++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..+
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 4699999999995 4579999999999999999999999999999999999999999999987643 249
Q ss_pred EEEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhh
Q 006442 164 AFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (645)
Q Consensus 164 ~~v~Q~~~-~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (645)
+|++|++. .++..|++||+...... ..........++.++
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~---------------------------------------~~~~~~~~~~~~~~~ 126 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLEN---------------------------------------KKVPPKKMKDIIDDL 126 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHH---------------------------------------cCCCHHHHHHHHHHH
Confidence 99999984 45678999998532100 001111223456677
Q ss_pred chhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---C-CCeEEEEecCHHH
Q 006442 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---Q-DVPMVIISHDRAF 318 (645)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~-g~tvIivsHd~~~ 318 (645)
++.+|+. +..++.+.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|++ . +.|||++||++++
T Consensus 127 l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 205 (271)
T PRK13632 127 AKKVGME-DYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE 205 (271)
T ss_pred HHHcCCH-HHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH
Confidence 8888886 577888999999999999999999999999999999999999999999988753 3 5899999999999
Q ss_pred HHhhcCeEEEEcCceeEEeccChHH
Q 006442 319 LDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 319 l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
+. .||+++++++|++. ..|+..+
T Consensus 206 ~~-~~d~v~~l~~G~i~-~~g~~~~ 228 (271)
T PRK13632 206 AI-LADKVIVFSEGKLI-AQGKPKE 228 (271)
T ss_pred Hh-hCCEEEEEECCEEE-EecCHHH
Confidence 96 79999999999974 4455443
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=333.57 Aligned_cols=201 Identities=27% Similarity=0.389 Sum_probs=172.0
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------cchh
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYF 493 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~~ 493 (645)
.|+++|++++|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~ 82 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMV 82 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEE
Confidence 489999999998888999999999999999999999999999999999999999999999997652 2344
Q ss_pred ccchhhcCCCCCCHHHHHHhhhc--cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCC
Q 006442 494 EQNQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571 (645)
Q Consensus 494 ~q~~~~~l~~~~tv~e~v~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt 571 (645)
+|+. .+. ..|+.+|+..... .....++.++++.+++..+..++++.+||||||||++|||||+.+|++|||||||
T Consensus 83 ~q~~--~~~-~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 159 (241)
T PRK14250 83 FQQP--HLF-EGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPT 159 (241)
T ss_pred ecCc--hhc-hhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 5442 333 4699999875422 1223467788999999645678999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHH
Q 006442 572 NHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQV 628 (645)
Q Consensus 572 ~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~ 628 (645)
++||+.+++.+.+.|++. +.|||+||||++++.++||++++|++|++... +..+++
T Consensus 160 ~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~~ 219 (241)
T PRK14250 160 SALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEY-AKTYDF 219 (241)
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEe-CCHHHH
Confidence 999999999999988764 56999999999999999999999999999864 444443
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=340.77 Aligned_cols=205 Identities=27% Similarity=0.391 Sum_probs=175.1
Q ss_pred cEEEEEeeeeeeC-CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc------------
Q 006442 423 SVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------ 489 (645)
Q Consensus 423 ~~i~~~~v~~~y~-~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------ 489 (645)
++|+++|++++|+ ++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 4799999999996 577999999999999999999999999999999999999999999999998752
Q ss_pred cchhccchhhcCCCCCCHHHHHHhhhcc--cc----HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCC
Q 006442 490 PNYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (645)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~v~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 563 (645)
.+|++|+.... .+..|+.+|+...... .. ...+..+++.+|+. +..++++.+||||||||++|||||+.+|+
T Consensus 84 ig~v~q~~~~~-~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrl~laraL~~~p~ 161 (283)
T PRK13636 84 VGMVFQDPDNQ-LFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPK 161 (283)
T ss_pred EEEEecCcchh-hccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 23555543222 2467999999764321 11 23577889999994 67899999999999999999999999999
Q ss_pred eEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 564 LLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 564 lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
+|||||||++||+.++..+.++|++. +.|||++|||++++..+|||+++|++|+++. .|+.+++..
T Consensus 162 lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~-~g~~~~~~~ 231 (283)
T PRK13636 162 VLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVIL-QGNPKEVFA 231 (283)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHHhc
Confidence 99999999999999999999988754 4699999999999999999999999999975 577776543
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=336.59 Aligned_cols=203 Identities=30% Similarity=0.438 Sum_probs=174.5
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------cchh
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYF 493 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~~ 493 (645)
+|+++|+++.|+++.+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++. .+|+
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL 81 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEE
Confidence 589999999999888999999999999999999999999999999999999999999999997642 2344
Q ss_pred ccchhhcCCCCCCHHHHHHhhhcc------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHc------cC
Q 006442 494 EQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV------KP 561 (645)
Q Consensus 494 ~q~~~~~l~~~~tv~e~v~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~------~~ 561 (645)
+|+ ..+.+..|+.+|+...... .....+..+++.+++. +..++.+.+|||||||||+|||||+ .+
T Consensus 82 ~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~ 158 (258)
T PRK13548 82 PQH--SSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLA-HLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGP 158 (258)
T ss_pred ccC--CcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCH-hHhcCCcccCCHHHHHHHHHHHHHhcccccCCC
Confidence 544 3455678999998764321 1123567889999994 6779999999999999999999999 59
Q ss_pred CCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 562 STLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 562 p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|++|||||||++||+.++..+.+.|+++ +.|||+||||++++.++||++++|++|++.. .+..+++.+
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~~ 230 (258)
T PRK13548 159 PRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVA-DGTPAEVLT 230 (258)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEe-eCCHHHHhC
Confidence 9999999999999999999999988754 4599999999999999999999999999984 467766543
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=336.91 Aligned_cols=210 Identities=19% Similarity=0.274 Sum_probs=170.5
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEEcCCC---------
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN--------- 160 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~-----p~~G~I~~~~~~--------- 160 (645)
..+|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 18 ~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 97 (267)
T PRK14237 18 EIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY 97 (267)
T ss_pred CeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChH
Confidence 346999999999988889999999999999999999999999999999999986 589999987642
Q ss_pred ---ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHH
Q 006442 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (645)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (645)
..|+|++|++.+++ .|+.||+...+... . .......+.
T Consensus 98 ~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~---------------~-----------------------~~~~~~~~~ 138 (267)
T PRK14237 98 EMRKHIGMVFQRPNPFA-KSIYENITFALERA---------------G-----------------------VKDKKVLDE 138 (267)
T ss_pred HHhcceEEEecCCcccc-ccHHHHHHhHHHhc---------------C-----------------------CCCHHHHHH
Confidence 25999999987765 69999985321100 0 000111233
Q ss_pred HHHhhchhcCCCc---ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 006442 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (645)
Q Consensus 238 ~i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIiv 312 (645)
++.++++.+++.. ...++++.+||||||||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|||++
T Consensus 139 ~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~ 218 (267)
T PRK14237 139 IVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIV 218 (267)
T ss_pred HHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 4455666666631 346788999999999999999999999999999999999999999999887753 46899999
Q ss_pred ecCHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
||+++++..+||+++++++|++. ..|+..++
T Consensus 219 tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 249 (267)
T PRK14237 219 THNMQQAARASDYTAFFYLGDLI-EYDKTRNI 249 (267)
T ss_pred ecCHHHHHHhcCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999999984 44655443
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=334.03 Aligned_cols=209 Identities=19% Similarity=0.256 Sum_probs=169.0
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEEcCCC---------
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN--------- 160 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p-----~~G~I~~~~~~--------- 160 (645)
.++|+++|++++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.+
T Consensus 2 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 2 KIKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred ccEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 3579999999999888899999999999999999999999999999999999875 79999987643
Q ss_pred ---ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHH
Q 006442 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (645)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (645)
..++|++|++.++. .|+++|+...... ... ........
T Consensus 82 ~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~---------------~~~-----------------------~~~~~~~~ 122 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFP-MSIYDNVAYGPRI---------------HGI-----------------------KDKKELDK 122 (251)
T ss_pred HHHhheEEEecCCCcCC-CcHHHHHHhHHHh---------------cCC-----------------------CcHHHHHH
Confidence 24999999998765 8999998522100 000 00001122
Q ss_pred HHHhhchhcCCC---cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 006442 238 KVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (645)
Q Consensus 238 ~i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIiv 312 (645)
++.++++.+|+. ....++++.+||||||||++|||||+.+|+||||||||+|||+.++.++.++|++ .+.|||++
T Consensus 123 ~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiiv 202 (251)
T PRK14270 123 IVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIV 202 (251)
T ss_pred HHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 344556666653 1345778899999999999999999999999999999999999999999888753 26899999
Q ss_pred ecCHHHHHhhcCeEEEEcCceeEEeccChHH
Q 006442 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
||+++++..+||+++++++|++. ..|..++
T Consensus 203 sH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~ 232 (251)
T PRK14270 203 THNMQQASRVSDYTAFFLMGDLI-EFNKTEK 232 (251)
T ss_pred EcCHHHHHHhcCEEEEEECCeEE-EeCCHHH
Confidence 99999999999999999999984 4455443
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-40 Score=333.32 Aligned_cols=202 Identities=27% Similarity=0.442 Sum_probs=173.1
Q ss_pred EEEEeeeeeeCC-eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------cchh
Q 006442 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYF 493 (645)
Q Consensus 425 i~~~~v~~~y~~-~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~~ 493 (645)
++++|++++|++ +.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 468999999987 78999999999999999999999999999999999999999999999997652 1344
Q ss_pred ccchhhcCCCCCCHHHHHHhhhcc--c----cHHHHHHHHhhcCCCh-hhhccCcCcCCHhHHHHHHHHHHHccCCCeEE
Q 006442 494 EQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKA-DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (645)
Q Consensus 494 ~q~~~~~l~~~~tv~e~v~~~~~~--~----~~~~~~~~L~~~~l~~-~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 566 (645)
+|+ ..+.+..|+.+|+...... . ..+.+.++++.+++.. ...++++.+|||||||||+|||||+.+|++||
T Consensus 81 ~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 158 (242)
T cd03295 81 IQQ--IGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLL 158 (242)
T ss_pred ccC--ccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 443 3456678999999764211 1 1235778899999963 36789999999999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 567 LDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 567 LDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
|||||++||+.++..+.+.|.+. +.|||+||||++++.++||++++|++|+++. .++.+++.
T Consensus 159 lDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 224 (242)
T cd03295 159 MDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQ-VGTPDEIL 224 (242)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ecCHHHHH
Confidence 99999999999999999998864 4699999999999999999999999999985 46666553
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-40 Score=347.12 Aligned_cols=205 Identities=21% Similarity=0.342 Sum_probs=173.4
Q ss_pred EEEEEeeeeeeC----CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC----CCeeEEEECceecc------
Q 006442 424 VVTIKNLEFGYE----DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK----PRGGEVLLGEHNVL------ 489 (645)
Q Consensus 424 ~i~~~~v~~~y~----~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~----p~~G~i~~~g~~~~------ 489 (645)
+|+++|+++.|+ ...+++++||+|.+||++||+|+||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 689999999994 4579999999999999999999999999999999999996 58999999998752
Q ss_pred --------cchhccchhhcCCCCCCHHHHHHhhhc------c------ccHHHHHHHHhhcCCCh--hhhccCcCcCCHh
Q 006442 490 --------PNYFEQNQAEALDLDKTVLETVAEAAE------D------WRIDDIKGLLGRCNFKA--DMLDRKVSLLSGG 547 (645)
Q Consensus 490 --------~~~~~q~~~~~l~~~~tv~e~v~~~~~------~------~~~~~~~~~L~~~~l~~--~~~~~~~~~LSgG 547 (645)
.+|++|+....+.+..|+.+++..... . ....++.++|+.+|+.. +..++.+.+||||
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG 162 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEG 162 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHH
Confidence 235666654446677899998864211 0 11245788999999963 3468899999999
Q ss_pred HHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCC
Q 006442 548 EKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAG 623 (645)
Q Consensus 548 qkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~ 623 (645)
|||||+|||||+.+|+||||||||++||+.++..+.++|++. +.|||+||||++++.++||||++|++|+|++. |
T Consensus 163 ~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~-g 241 (330)
T PRK15093 163 ECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVET-A 241 (330)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE-C
Confidence 999999999999999999999999999999999999998863 56999999999999999999999999999864 5
Q ss_pred ChhHHH
Q 006442 624 DYNQVQ 629 (645)
Q Consensus 624 ~~~~~~ 629 (645)
+.++++
T Consensus 242 ~~~~i~ 247 (330)
T PRK15093 242 PSKELV 247 (330)
T ss_pred CHHHHH
Confidence 555543
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=334.37 Aligned_cols=209 Identities=20% Similarity=0.308 Sum_probs=166.5
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCC-----ccEEEEcCCC-----------
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-----SGNVIKAKSN----------- 160 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~-----~G~I~~~~~~----------- 160 (645)
+|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.++|.+
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAM 83 (252)
T ss_pred EEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHh
Confidence 589999999999888999999999999999999999999999999999999874 8999987632
Q ss_pred -ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHH
Q 006442 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (645)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (645)
..++|++|++.+++..|+.||+...+... . . . ......+.+
T Consensus 84 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~-~--------------~-~----------------------~~~~~~~~~ 125 (252)
T PRK14272 84 RRRVGMVFQKPNPFPTMSVFDNVVAGLKLA-G--------------I-R----------------------DRDHLMEVA 125 (252)
T ss_pred hceeEEEeccCccCcCCCHHHHHHHHHHhc-C--------------C-C----------------------CHHHHHHHH
Confidence 25999999998877789999985322100 0 0 0 000011122
Q ss_pred HhhchhcCCC---cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 006442 240 SKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (645)
Q Consensus 240 ~~ll~~lgl~---~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsH 314 (645)
.+++..+++. ....++++.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .++|||++||
T Consensus 126 ~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH 205 (252)
T PRK14272 126 ERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTH 205 (252)
T ss_pred HHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 2233333321 1345677899999999999999999999999999999999999999999988753 3689999999
Q ss_pred CHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 315 d~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
+++++..+||++++|++|++. ..|..++.
T Consensus 206 ~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 234 (252)
T PRK14272 206 NMHQAARVSDTTSFFLVGDLV-EHGPTDQL 234 (252)
T ss_pred CHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999974 55654443
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=344.98 Aligned_cols=195 Identities=23% Similarity=0.353 Sum_probs=168.9
Q ss_pred eeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---------cchhccchhhcCC
Q 006442 432 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNYFEQNQAEALD 502 (645)
Q Consensus 432 ~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------~~~~~q~~~~~l~ 502 (645)
++|+++.+|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+|++|+ ..+.
T Consensus 1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~--~~~~ 78 (302)
T TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQY--ASVD 78 (302)
T ss_pred CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCC--CCCC
Confidence 3677788999999999999999999999999999999999999999999999998752 2455554 3566
Q ss_pred CCCCHHHHHHhhhccc------cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCH
Q 006442 503 LDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576 (645)
Q Consensus 503 ~~~tv~e~v~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~ 576 (645)
+.+|+.+|+....... ....+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+|||+
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~ 157 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELG-EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP 157 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 7789999997643211 123577899999995 667999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 577 PSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 577 ~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
.++..+.+.|+++ +.|||++|||++++.++||+|++|++|+++. .|+.+++.+
T Consensus 158 ~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~l~~ 213 (302)
T TIGR01188 158 RTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIA-EGTPEELKR 213 (302)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHHH
Confidence 9999999999865 4699999999999999999999999999985 577777654
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=333.38 Aligned_cols=203 Identities=27% Similarity=0.394 Sum_probs=173.1
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC-----eeEEEECceecc---------
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-----GGEVLLGEHNVL--------- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~-----~G~i~~~g~~~~--------- 489 (645)
+|+++|++++|+++.+++++||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 478999999999888999999999999999999999999999999999999998 999999998753
Q ss_pred ---cchhccchhhcCCCCCCHHHHHHhhhccc-------cHHHHHHHHhhcCCCh---hhhccCcCcCCHhHHHHHHHHH
Q 006442 490 ---PNYFEQNQAEALDLDKTVLETVAEAAEDW-------RIDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFCK 556 (645)
Q Consensus 490 ---~~~~~q~~~~~l~~~~tv~e~v~~~~~~~-------~~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~lAr 556 (645)
.+|++|+ ..+.+ .|+.+|+....... ....+..+++.+++.. +..++++.+|||||||||+|||
T Consensus 81 ~~~i~~v~q~--~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lar 157 (247)
T TIGR00972 81 RRRVGMVFQK--PNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIAR 157 (247)
T ss_pred HhheEEEecC--cccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHH
Confidence 1234443 33445 89999997643211 1235678899999952 4578899999999999999999
Q ss_pred HHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 557 al~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
||+.+|++|||||||++||+.++..+.++|+++. .|||+||||++++.++||++++|++|++.. .++.+++..
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~~ 232 (247)
T TIGR00972 158 ALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVE-YGPTEQIFT 232 (247)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHHHh
Confidence 9999999999999999999999999999998653 699999999999999999999999999985 466666543
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=376.45 Aligned_cols=206 Identities=30% Similarity=0.502 Sum_probs=177.5
Q ss_pred CCccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccC--c
Q 006442 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF--E 171 (645)
Q Consensus 94 ~~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~--~ 171 (645)
...+|+++|++++|+++.+|+|+||+|++|+++||+|||||||||||++|+|+++|++|+|.+++ ..+|||++|++ .
T Consensus 309 ~~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~-~~~igy~~Q~~~~~ 387 (638)
T PRK10636 309 PNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK-GIKLGYFAQHQLEF 387 (638)
T ss_pred CCceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC-CEEEEEecCcchhh
Confidence 34579999999999988899999999999999999999999999999999999999999999863 45899999974 2
Q ss_pred cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcc
Q 006442 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (645)
Q Consensus 172 ~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~ 251 (645)
+....|+.+++... .....+.++.++|..+++...
T Consensus 388 l~~~~~~~~~~~~~---------------------------------------------~~~~~~~~~~~~L~~~~l~~~ 422 (638)
T PRK10636 388 LRADESPLQHLARL---------------------------------------------APQELEQKLRDYLGGFGFQGD 422 (638)
T ss_pred CCccchHHHHHHHh---------------------------------------------CchhhHHHHHHHHHHcCCChh
Confidence 33344555543200 000113456678888999655
Q ss_pred cccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcC
Q 006442 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM 331 (645)
Q Consensus 252 ~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~i~~l~~ 331 (645)
..++++.+|||||||||+|||+|+.+|+||||||||||||+.+++.|.++|++.+.|||+||||++++..+||+|+++++
T Consensus 423 ~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~ 502 (638)
T PRK10636 423 KVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHD 502 (638)
T ss_pred HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEEC
Confidence 67899999999999999999999999999999999999999999999999988778999999999999999999999999
Q ss_pred ceeEEeccChHHHH
Q 006442 332 GVSRTYEGNYSQYV 345 (645)
Q Consensus 332 G~~~~~~g~~~~~~ 345 (645)
|++..|.|+|++|.
T Consensus 503 G~i~~~~g~~~~~~ 516 (638)
T PRK10636 503 GKVEPFDGDLEDYQ 516 (638)
T ss_pred CEEEEcCCCHHHHH
Confidence 99877999999884
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=371.47 Aligned_cols=207 Identities=25% Similarity=0.421 Sum_probs=179.6
Q ss_pred CCCcEEEEEeeeeeeCCe--eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------
Q 006442 420 SGRSVVTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------- 489 (645)
Q Consensus 420 ~~~~~i~~~~v~~~y~~~--~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------- 489 (645)
.-.+-|+++||+|+|+.. ++|+|+||+|++||++||+|+||||||||+|+|.|+++|++|+|.+||.|+.
T Consensus 467 ~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR 546 (709)
T COG2274 467 KLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLR 546 (709)
T ss_pred ccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHH
Confidence 345569999999999754 6999999999999999999999999999999999999999999999999863
Q ss_pred --cchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhh----------hccCcCcCCHhHHHHHHHHHH
Q 006442 490 --PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM----------LDRKVSLLSGGEKARLAFCKF 557 (645)
Q Consensus 490 --~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~----------~~~~~~~LSgGqkqrv~lAra 557 (645)
.+|+.|+ ...++.|+.||+..+....+.+++.+++...|..... .......||||||||++||||
T Consensus 547 ~~ig~V~Q~---~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARa 623 (709)
T COG2274 547 RQVGYVLQD---PFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARA 623 (709)
T ss_pred hheeEEccc---chhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHH
Confidence 2455554 3457899999999988877777777777776664222 134456899999999999999
Q ss_pred HccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHH
Q 006442 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSL 631 (645)
Q Consensus 558 l~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~ 631 (645)
|+++|+|||||||||+||+++++.+.+.|.+.. .|+|+|||++.++.. ||||++|++|++++ .|+.+++++.
T Consensus 624 Ll~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~-adrIiVl~~Gkiv~-~gs~~ell~~ 697 (709)
T COG2274 624 LLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRS-ADRIIVLDQGKIVE-QGSHEELLAQ 697 (709)
T ss_pred hccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhh-ccEEEEccCCceec-cCCHHHHHHh
Confidence 999999999999999999999999999999875 799999999999976 99999999999996 6888888765
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-40 Score=335.19 Aligned_cols=206 Identities=22% Similarity=0.315 Sum_probs=171.9
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECcee-----cc--------
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-----VL-------- 489 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~-----~~-------- 489 (645)
++|+++|+++.|+++.+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ +.
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred ceEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 47999999999988889999999999999999999999999999999999999999999998865 31
Q ss_pred ------cchhccchhhcCCCCCCHHHHHHhhh---c--c--ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHH
Q 006442 490 ------PNYFEQNQAEALDLDKTVLETVAEAA---E--D--WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK 556 (645)
Q Consensus 490 ------~~~~~q~~~~~l~~~~tv~e~v~~~~---~--~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAr 556 (645)
.+|+.|.....+.+..++.+|+.... . . .....+.++++.+++.....++.+..|||||||||+|||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~lar 161 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIAR 161 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHH
Confidence 13444442222345568888875321 1 1 113457788999999545678999999999999999999
Q ss_pred HHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 557 al~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
||+.+|++|||||||++||+.+++.+.+.|.+. +.|||+||||++++..+||++++|++|+++. .++.+++.
T Consensus 162 al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~-~~~~~~~~ 237 (253)
T TIGR02323 162 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVE-SGLTDQVL 237 (253)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-ECCHHHHh
Confidence 999999999999999999999999999988753 5699999999999999999999999999985 45655554
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-40 Score=335.60 Aligned_cols=202 Identities=30% Similarity=0.459 Sum_probs=173.8
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------cchh
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYF 493 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~~ 493 (645)
+|+++|++++|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .+|+
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL 81 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence 589999999999889999999999999999999999999999999999999999999999997642 2344
Q ss_pred ccchhhcCCCCCCHHHHHHhhhc----------cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCC
Q 006442 494 EQNQAEALDLDKTVLETVAEAAE----------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (645)
Q Consensus 494 ~q~~~~~l~~~~tv~e~v~~~~~----------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 563 (645)
+|+ ..+.+..|+.+|+..... ......+..+++.+++. +..++++.+|||||||||+||||++.+|+
T Consensus 82 ~q~--~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~ 158 (255)
T PRK11231 82 PQH--HLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN-HLADRRLTDLSGGQRQRAFLAMVLAQDTP 158 (255)
T ss_pred ccc--CCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCH-HHHcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 444 234556799999876421 01123567889999994 66799999999999999999999999999
Q ss_pred eEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 564 LLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 564 lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
+|||||||++||+.++..+.+.|++. +.|||++|||++++.++||++++|++|++.. .++.+++.
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 226 (255)
T PRK11231 159 VVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMA-QGTPEEVM 226 (255)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEE-EcCHHHhc
Confidence 99999999999999999999999764 4699999999999999999999999999974 46666653
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=338.04 Aligned_cols=208 Identities=19% Similarity=0.302 Sum_probs=169.0
Q ss_pred CCccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEEcCCC--------
Q 006442 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN-------- 160 (645)
Q Consensus 94 ~~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~-----p~~G~I~~~~~~-------- 160 (645)
..++|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|..
T Consensus 36 ~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 36 GETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred CCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 4567999999999988889999999999999999999999999999999999987 689999987632
Q ss_pred ----ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHH
Q 006442 161 ----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (645)
Q Consensus 161 ----~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (645)
..++|++|++.+++ .|+.||+...... . ... ....
T Consensus 116 ~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~---------------~------------------------~~~-~~~~ 154 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFP-KSIYDNVAYGLKI---------------Q------------------------GYD-GDID 154 (285)
T ss_pred HhhhccEEEEecCCccCc-CCHHHHHHHHHHH---------------c------------------------CCc-HHHH
Confidence 25999999987765 4999998532110 0 000 0112
Q ss_pred HHHHhhchhcCCCc---ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEE
Q 006442 237 AKVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311 (645)
Q Consensus 237 ~~i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIi 311 (645)
.++.++++.+|+.. +..++++.+|||||||||+|||||+.+|+||||||||+|||+.+++++.++|++ .+.|||+
T Consensus 155 ~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii 234 (285)
T PRK14254 155 ERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVI 234 (285)
T ss_pred HHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 34556666777642 356788999999999999999999999999999999999999999999988754 2579999
Q ss_pred EecCHHHHHhhcCeEE-EEcCceeEEeccChHH
Q 006442 312 ISHDRAFLDQLCTKIV-ETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 312 vsHd~~~l~~~~d~i~-~l~~G~~~~~~g~~~~ 343 (645)
+||+++++..+||+++ ++++|++. ..|...+
T Consensus 235 ~tH~~~~i~~~~dri~v~l~~G~i~-~~g~~~~ 266 (285)
T PRK14254 235 VTHNMQQAARISDKTAVFLTGGELV-EFDDTDK 266 (285)
T ss_pred EeCCHHHHHhhcCEEEEEeeCCEEE-EeCCHHH
Confidence 9999999999999975 57999884 3455443
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-40 Score=330.59 Aligned_cols=194 Identities=28% Similarity=0.435 Sum_probs=167.1
Q ss_pred cEEEEEeeeeeeCC----eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---------
Q 006442 423 SVVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (645)
Q Consensus 423 ~~i~~~~v~~~y~~----~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------- 489 (645)
++|+++|+++.|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 47999999999974 57999999999999999999999999999999999999999999999997652
Q ss_pred -----cchhccchhhcCCCCCCHHHHHHhhhc--c----ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHH
Q 006442 490 -----PNYFEQNQAEALDLDKTVLETVAEAAE--D----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (645)
Q Consensus 490 -----~~~~~q~~~~~l~~~~tv~e~v~~~~~--~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral 558 (645)
.+|++|+ ..+++..|+.+|+..... . ...+++.++++.+|+. +..++++.+||||||||++||||+
T Consensus 84 ~~~~~i~~v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrl~la~al 160 (233)
T PRK11629 84 LRNQKLGFIYQF--HHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLE-HRANHRPSELSGGERQRVAIARAL 160 (233)
T ss_pred HHhccEEEEecC--cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHH
Confidence 1244443 345567899999976321 1 1124577899999995 667899999999999999999999
Q ss_pred ccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEe
Q 006442 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (645)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~ 620 (645)
+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++.. +|++++|++|+++.
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~-~~~~~~l~~G~i~~ 225 (233)
T PRK11629 161 VNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKR-MSRQLEMRDGRLTA 225 (233)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh-hCEEEEEECCEEEE
Confidence 9999999999999999999999999999864 4599999999999987 47999999999975
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=340.71 Aligned_cols=207 Identities=22% Similarity=0.324 Sum_probs=171.5
Q ss_pred ccEEEEeEEEEeCC------eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC---------
Q 006442 96 SGVKLENISKSYKG------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------- 160 (645)
Q Consensus 96 ~~i~i~nls~~y~~------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------- 160 (645)
.+|+++|++++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 46999999999963 469999999999999999999999999999999999999999999998632
Q ss_pred --ceEEEEeccCcc-CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHH
Q 006442 161 --MKIAFLSQEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (645)
Q Consensus 161 --~~i~~v~Q~~~~-~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (645)
..++|++|++.. ++..|+.+|+...... ........++
T Consensus 83 ~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~---------------------------------------~~~~~~~~~~ 123 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPEN---------------------------------------LGIPPEEIRE 123 (280)
T ss_pred HhhheEEEecChhhhhccccHHHHHHhhHhh---------------------------------------cCCCHHHHHH
Confidence 248999999742 2346898887522100 0011122344
Q ss_pred HHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEe
Q 006442 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIIS 313 (645)
Q Consensus 238 ~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivs 313 (645)
++.++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++ .|.|||++|
T Consensus 124 ~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvt 202 (280)
T PRK13633 124 RVDESLKKVGMY-EYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILIT 202 (280)
T ss_pred HHHHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 567788888986 678899999999999999999999999999999999999999999999888743 489999999
Q ss_pred cCHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
||++++.. ||+++++++|++. ..|+..++
T Consensus 203 H~~~~~~~-~d~v~~l~~G~i~-~~g~~~~~ 231 (280)
T PRK13633 203 HYMEEAVE-ADRIIVMDSGKVV-MEGTPKEI 231 (280)
T ss_pred cChHHHhc-CCEEEEEECCEEE-EecCHHHH
Confidence 99999986 9999999999873 55665544
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=326.09 Aligned_cols=190 Identities=23% Similarity=0.344 Sum_probs=163.4
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC---------ceEEEEe
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLS 167 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~---------~~i~~v~ 167 (645)
+|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..++|++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeC
Confidence 3789999999998889999999999999999999999999999999999999999999998643 2599999
Q ss_pred ccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcC
Q 006442 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (645)
Q Consensus 168 Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg 247 (645)
|++.+++..|+.||+...... . . ....+++.++++.+|
T Consensus 81 ~~~~~~~~~tv~e~l~~~~~~---------------~--------------------------~-~~~~~~~~~~l~~~g 118 (204)
T PRK13538 81 HQPGIKTELTALENLRFYQRL---------------H--------------------------G-PGDDEALWEALAQVG 118 (204)
T ss_pred CccccCcCCcHHHHHHHHHHh---------------c--------------------------C-ccHHHHHHHHHHHcC
Confidence 998887788999998532100 0 0 011234567788888
Q ss_pred CCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcC
Q 006442 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCT 324 (645)
Q Consensus 248 l~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~~d 324 (645)
+. +..++++.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||++|||++++..+.+
T Consensus 119 l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~ 197 (204)
T PRK13538 119 LA-GFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKV 197 (204)
T ss_pred CH-HHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCc
Confidence 85 467888999999999999999999999999999999999999999999988753 48899999999999999888
Q ss_pred eEEEE
Q 006442 325 KIVET 329 (645)
Q Consensus 325 ~i~~l 329 (645)
|++.+
T Consensus 198 ~~~~~ 202 (204)
T PRK13538 198 RKLRL 202 (204)
T ss_pred eEEec
Confidence 88776
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-40 Score=334.79 Aligned_cols=198 Identities=27% Similarity=0.388 Sum_probs=164.6
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCCC
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~ 175 (645)
++|+++|++++|+++++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++ ...++|++|++.++..
T Consensus 3 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-~~~i~~v~q~~~~~~~ 81 (251)
T PRK09544 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-KLRIGYVPQKLYLDTT 81 (251)
T ss_pred cEEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-ccCEEEeccccccccc
Confidence 369999999999988899999999999999999999999999999999999999999999986 3479999999866544
Q ss_pred --CCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccc
Q 006442 176 --RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (645)
Q Consensus 176 --~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~ 253 (645)
.|+.+++... . ...++++.++++.+|+. +..
T Consensus 82 l~~~~~~~~~~~--~--------------------------------------------~~~~~~~~~~l~~~gl~-~~~ 114 (251)
T PRK09544 82 LPLTVNRFLRLR--P--------------------------------------------GTKKEDILPALKRVQAG-HLI 114 (251)
T ss_pred cChhHHHHHhcc--c--------------------------------------------cccHHHHHHHHHHcCCh-HHH
Confidence 3555543210 0 00012345567777875 567
Q ss_pred cccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCeEEEE
Q 006442 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVET 329 (645)
Q Consensus 254 ~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d~i~~l 329 (645)
++++.+||||||||++|||||+.+|++|||||||+|||+.++.++.++|++ .+.|||++||+++++..+||+|+++
T Consensus 115 ~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l 194 (251)
T PRK09544 115 DAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCL 194 (251)
T ss_pred hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 888999999999999999999999999999999999999999999888742 3899999999999999999999999
Q ss_pred cCceeEEeccChHH
Q 006442 330 EMGVSRTYEGNYSQ 343 (645)
Q Consensus 330 ~~G~~~~~~g~~~~ 343 (645)
++ ++ ...|..++
T Consensus 195 ~~-~i-~~~g~~~~ 206 (251)
T PRK09544 195 NH-HI-CCSGTPEV 206 (251)
T ss_pred CC-ce-EeeCCHHH
Confidence 75 44 35565444
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-40 Score=331.66 Aligned_cols=205 Identities=32% Similarity=0.483 Sum_probs=172.0
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------ceEEEEecc
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------~~i~~v~Q~ 169 (645)
|+++|++++|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~ 80 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQH 80 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecC
Confidence 478999999998889999999999999999999999999999999999999999999987643 359999999
Q ss_pred CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCC
Q 006442 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (645)
Q Consensus 170 ~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (645)
+.+++..|+.||+...... . ........+.+.++++.+++.
T Consensus 81 ~~~~~~~t~~enl~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l~ 121 (237)
T TIGR00968 81 YALFKHLTVRDNIAFGLEI---------------R------------------------KHPKAKIKARVEELLELVQLE 121 (237)
T ss_pred hhhccCCcHHHHHHhHHHh---------------c------------------------CCCHHHHHHHHHHHHHHcCCH
Confidence 9887778999998532100 0 000011123455677788885
Q ss_pred cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCe
Q 006442 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (645)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d~ 325 (645)
+..++.+.+|||||+||++|||||+.+|+++||||||+|||+.+++++.++|++ .++|||++||+++++..+||+
T Consensus 122 -~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~ 200 (237)
T TIGR00968 122 -GLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADR 200 (237)
T ss_pred -hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCE
Confidence 567888999999999999999999999999999999999999999999988753 379999999999999999999
Q ss_pred EEEEcCceeEEeccChHH
Q 006442 326 IVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 326 i~~l~~G~~~~~~g~~~~ 343 (645)
++++++|++. ..|..+.
T Consensus 201 i~~l~~g~i~-~~~~~~~ 217 (237)
T TIGR00968 201 IVVMSNGKIE-QIGSPDE 217 (237)
T ss_pred EEEEECCEEE-EecCHHH
Confidence 9999999984 4455443
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=329.50 Aligned_cols=192 Identities=31% Similarity=0.497 Sum_probs=164.6
Q ss_pred EEEEEeeeeeeCC----eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------
Q 006442 424 VVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~----~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (645)
+|+++|+++.|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 3789999999974 57999999999999999999999999999999999999999999999997652
Q ss_pred ----cchhccchhhcCCCCCCHHHHHHhhhc--cc----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHc
Q 006442 490 ----PNYFEQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV 559 (645)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~v~~~~~--~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~ 559 (645)
.+|++|+ ..+++..|+.+|+..... .. ....+.++++.+++. +..++++.+|||||||||+|||||+
T Consensus 81 ~~~~i~~v~q~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~ 157 (221)
T TIGR02211 81 RNKKLGFIYQF--HHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE-HRINHRPSELSGGERQRVAIARALV 157 (221)
T ss_pred HHhcEEEEecc--cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHh
Confidence 1233443 345567899999976321 11 123567899999995 6678999999999999999999999
Q ss_pred cCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEE
Q 006442 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQ 619 (645)
Q Consensus 560 ~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~ 619 (645)
.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++.. ||++++|++|+++
T Consensus 158 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 158 NQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 999999999999999999999999999754 4699999999999965 7999999999875
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=352.74 Aligned_cols=203 Identities=24% Similarity=0.328 Sum_probs=172.6
Q ss_pred EeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCC----C--------------ce
Q 006442 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS----N--------------MK 162 (645)
Q Consensus 101 ~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~----~--------------~~ 162 (645)
.++.++|+...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. . .+
T Consensus 28 ~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 28 EEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred HHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence 45677888888999999999999999999999999999999999999999999999873 1 25
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhh
Q 006442 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (645)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (645)
|+|++|++.+++..||.||+...+.. ..++......++.++
T Consensus 108 i~~vfQ~~~l~p~~Tv~eNi~~~~~~---------------------------------------~g~~~~~~~~~a~e~ 148 (382)
T TIGR03415 108 VSMVFQKFALMPWLTVEENVAFGLEM---------------------------------------QGMPEAERRKRVDEQ 148 (382)
T ss_pred EEEEECCCcCCCCCcHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHH
Confidence 99999999998889999998632110 001111233466778
Q ss_pred chhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHH
Q 006442 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAF 318 (645)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~ 318 (645)
++.+|+. +..++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.|. +.++|||+||||+++
T Consensus 149 le~vgL~-~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e 227 (382)
T TIGR03415 149 LELVGLA-QWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDE 227 (382)
T ss_pred HHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 8899996 67889999999999999999999999999999999999999999999988764 248999999999999
Q ss_pred HHhhcCeEEEEcCceeEEeccChHHH
Q 006442 319 LDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 319 l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
+.++||+|++|++|++. ..|+.++.
T Consensus 228 ~~~l~DrI~vl~~G~iv-~~g~~~ei 252 (382)
T TIGR03415 228 ALKIGNRIAIMEGGRII-QHGTPEEI 252 (382)
T ss_pred HHHhCCEEEEEECCEEE-EecCHHHH
Confidence 99999999999999984 45665544
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=333.23 Aligned_cols=207 Identities=19% Similarity=0.279 Sum_probs=165.3
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCC-----ccEEEEcCCC----------
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-----SGNVIKAKSN---------- 160 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~-----~G~I~~~~~~---------- 160 (645)
+.|+++|++|+|+++.+|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.++|.+
T Consensus 3 ~~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 82 (251)
T PRK14249 3 PKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVN 82 (251)
T ss_pred ceEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHH
Confidence 4699999999998888999999999999999999999999999999999999997 6999987632
Q ss_pred --ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHH
Q 006442 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (645)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (645)
..++|++|++.+++ .|+.||+....... ... .....++.
T Consensus 83 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---------------~~~-----------------------~~~~~~~~ 123 (251)
T PRK14249 83 LRKRVGMVFQQPNPFP-KSIFDNVAFGPRML---------------GTT-----------------------AQSRLDEV 123 (251)
T ss_pred hhceEEEEecCCccCc-CcHHHHHhhHHHhc---------------CCC-----------------------hhhHHHHH
Confidence 25999999998765 59999985321000 000 00001122
Q ss_pred HHhhchhcCCC---cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 006442 239 VSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (645)
Q Consensus 239 i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivs 313 (645)
+.+++..+|+. ....++.+.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||++|
T Consensus 124 ~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivs 203 (251)
T PRK14249 124 VEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVT 203 (251)
T ss_pred HHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 23333444432 1345778999999999999999999999999999999999999999999888753 478999999
Q ss_pred cCHHHHHhhcCeEEEEcCceeEEeccChH
Q 006442 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYS 342 (645)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~~~~g~~~ 342 (645)
|+++++..+||+++++++|++. ..|...
T Consensus 204 h~~~~~~~~~d~i~~l~~G~i~-~~~~~~ 231 (251)
T PRK14249 204 HNMQQAARASDWTGFLLTGDLV-EYGRTG 231 (251)
T ss_pred CCHHHHHhhCCEEEEEeCCeEE-EeCCHH
Confidence 9999999999999999999984 445543
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=369.51 Aligned_cols=212 Identities=34% Similarity=0.530 Sum_probs=180.7
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccC-ccC
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF-EVS 173 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~-~~~ 173 (645)
.++|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++ ....|||++|++ .++
T Consensus 322 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~-~~~~i~~v~q~~~~~~ 400 (556)
T PRK11819 322 DKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIG-ETVKLAYVDQSRDALD 400 (556)
T ss_pred CeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-CceEEEEEeCchhhcC
Confidence 457999999999998889999999999999999999999999999999999999999999985 456899999997 566
Q ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccc
Q 006442 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (645)
Q Consensus 174 ~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~ 253 (645)
+..||.+|+....... ..... +..+..++..+|+.....
T Consensus 401 ~~~tv~e~l~~~~~~~---------------------------------------~~~~~--~~~~~~~l~~~~l~~~~~ 439 (556)
T PRK11819 401 PNKTVWEEISGGLDII---------------------------------------KVGNR--EIPSRAYVGRFNFKGGDQ 439 (556)
T ss_pred CCCCHHHHHHhhcccc---------------------------------------ccccc--HHHHHHHHHhCCCChhHh
Confidence 7789999985321000 00000 112335678889864457
Q ss_pred cccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcC-c
Q 006442 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM-G 332 (645)
Q Consensus 254 ~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~i~~l~~-G 332 (645)
++++.+|||||||||+|||||+.+|++|||||||+|||+.++.+|.++|++...|||+||||++++..+||+|+++++ |
T Consensus 440 ~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g 519 (556)
T PRK11819 440 QKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDS 519 (556)
T ss_pred cCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCC
Confidence 889999999999999999999999999999999999999999999999987766999999999999999999999985 7
Q ss_pred eeEEeccChHHHHHHH
Q 006442 333 VSRTYEGNYSQYVLEK 348 (645)
Q Consensus 333 ~~~~~~g~~~~~~~~~ 348 (645)
++..+.|+|++|....
T Consensus 520 ~~~~~~g~~~~~~~~~ 535 (556)
T PRK11819 520 QVEWFEGNFQEYEEDK 535 (556)
T ss_pred eEEEecCCHHHHHHHH
Confidence 8878899998876553
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=332.22 Aligned_cols=203 Identities=22% Similarity=0.371 Sum_probs=174.2
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----------cch
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PNY 492 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~~~ 492 (645)
+|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEE
Confidence 689999999999889999999999999999999999999999999999999999999999997652 124
Q ss_pred hccchhhcCCCCCCHHHHHHhhhcc-------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeE
Q 006442 493 FEQNQAEALDLDKTVLETVAEAAED-------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (645)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~v~~~~~~-------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 565 (645)
++|+ ..+....|+.+|+...... .....+.++++.+++. +..++++.+|||||||||+|||||+.+|++|
T Consensus 83 ~~q~--~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~ll 159 (241)
T PRK10895 83 LPQE--ASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE-HLRDSMGQSLSGGERRRVEIARALAANPKFI 159 (241)
T ss_pred eccC--CcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCH-HHhhcchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 4443 3455668999998764211 1123577889999994 5678999999999999999999999999999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 566 VLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 566 lLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
||||||++||+.++..+.+.+.++ +.|||++|||++++..+||++++|++|+++. .++++++..
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~~~ 226 (241)
T PRK10895 160 LLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIA-HGTPTEILQ 226 (241)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEe-eCCHHHHhc
Confidence 999999999999999998888753 5699999999999999999999999999985 577777643
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=336.43 Aligned_cols=205 Identities=28% Similarity=0.402 Sum_probs=176.1
Q ss_pred CCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------c
Q 006442 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------P 490 (645)
Q Consensus 421 ~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~ 490 (645)
+..+|+++|++++|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 4 ~~~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 4 SVARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred cccEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 345799999999999888999999999999999999999999999999999999999999999998652 2
Q ss_pred chhccchhhcCCCCCCHHHHHHhhh-c---------cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHcc
Q 006442 491 NYFEQNQAEALDLDKTVLETVAEAA-E---------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560 (645)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~v~~~~-~---------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~ 560 (645)
+|++|+ ..+.+..|+.+|+.... . ......+..+++.+++. +..++++.+||||||||++||||++.
T Consensus 84 ~~v~q~--~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrv~laral~~ 160 (265)
T PRK10253 84 GLLAQN--ATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGIT-HLADQSVDTLSGGQRQRAWIAMVLAQ 160 (265)
T ss_pred EEeecc--CcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH-HHhcCCcccCChHHHHHHHHHHHHhc
Confidence 344554 34556789999987531 1 01123567889999994 67799999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 561 ~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++.++||++++|++|+++. .|..+++.
T Consensus 161 ~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 232 (265)
T PRK10253 161 ETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVA-QGAPKEIV 232 (265)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 99999999999999999999999999764 4599999999999999999999999999985 46666654
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=326.12 Aligned_cols=191 Identities=32% Similarity=0.482 Sum_probs=165.8
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cchhccc
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQN 496 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~q~ 496 (645)
|+++|++++|+++.. ++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|+
T Consensus 1 i~~~~l~~~~~~~~~--~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 78 (211)
T cd03298 1 VRLDKIRFSYGEQPM--HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQE 78 (211)
T ss_pred CEEEeEEEEeCCEec--ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecc
Confidence 478999999986543 999999999999999999999999999999999999999999998752 2455554
Q ss_pred hhhcCCCCCCHHHHHHhhhcc------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCC
Q 006442 497 QAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (645)
Q Consensus 497 ~~~~l~~~~tv~e~v~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP 570 (645)
..+++..|+.+|+...... ....++.++++.+++. +..++++.+||||||||++|||||+.+|++||||||
T Consensus 79 --~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP 155 (211)
T cd03298 79 --NNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLA-GLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEP 155 (211)
T ss_pred --cccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCH-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3455678999999754321 1234578899999994 667899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEe
Q 006442 571 TNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (645)
Q Consensus 571 t~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~ 620 (645)
|++||+.++..+.+.|+++ +.|||+||||++++.++|||+++|++|++..
T Consensus 156 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 209 (211)
T cd03298 156 FAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAA 209 (211)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEee
Confidence 9999999999999999754 4699999999999999999999999999874
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-40 Score=337.93 Aligned_cols=207 Identities=24% Similarity=0.404 Sum_probs=171.2
Q ss_pred ccEEEEeEEEEeCC--eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceE
Q 006442 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (645)
Q Consensus 96 ~~i~i~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i 163 (645)
++|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..+
T Consensus 6 ~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred ceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 46999999999975 359999999999999999999999999999999999999999999998743 259
Q ss_pred EEEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhh
Q 006442 164 AFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (645)
Q Consensus 164 ~~v~Q~~~-~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (645)
+|++|++. .++..|+.+|+....... ........+++.++
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~ 126 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENH---------------------------------------AVPYDEMHRRVSEA 126 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhc---------------------------------------CCCHHHHHHHHHHH
Confidence 99999985 556778988874321000 00111123345677
Q ss_pred chhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHH
Q 006442 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (645)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~ 318 (645)
++.+|+. +..++.+.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++ .|.|||++||++++
T Consensus 127 l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~ 205 (269)
T PRK13648 127 LKQVDML-ERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE 205 (269)
T ss_pred HHHcCCc-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH
Confidence 8888886 577888999999999999999999999999999999999999999999887753 48899999999999
Q ss_pred HHhhcCeEEEEcCceeEEeccChHHH
Q 006442 319 LDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 319 l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
+.. ||+|+++++|++. ..|..+++
T Consensus 206 ~~~-~d~i~~l~~G~i~-~~g~~~~~ 229 (269)
T PRK13648 206 AME-ADHVIVMNKGTVY-KEGTPTEI 229 (269)
T ss_pred Hhc-CCEEEEEECCEEE-EecCHHHH
Confidence 986 9999999999984 45655443
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=340.51 Aligned_cols=207 Identities=23% Similarity=0.366 Sum_probs=172.5
Q ss_pred ccEEEEeEEEEeCC--eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCc---cEEEEcCCC----------
Q 006442 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS---GNVIKAKSN---------- 160 (645)
Q Consensus 96 ~~i~i~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~---G~I~~~~~~---------- 160 (645)
.+|+++|++|+|++ +++|+++||+|++|++++|+||||||||||+++|+|+++|++ |+|.++|..
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 36999999999965 469999999999999999999999999999999999999987 899987743
Q ss_pred ceEEEEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHH
Q 006442 161 MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (645)
Q Consensus 161 ~~i~~v~Q~~~-~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (645)
..|+|++|++. .++..||+||+...... .........+++
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~---------------------------------------~~~~~~~~~~~~ 124 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLEN---------------------------------------RAVPRPEMIKIV 124 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHh---------------------------------------CCCCHHHHHHHH
Confidence 25999999985 45678999998521100 001112234456
Q ss_pred HhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 006442 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (645)
Q Consensus 240 ~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd 315 (645)
.++++.+|+. +..++++.+|||||+||++|||||+.+|++|||||||+|||+.++..+.++|++ .|+|||++||+
T Consensus 125 ~~~l~~~~L~-~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~ 203 (282)
T PRK13640 125 RDVLADVGML-DYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHD 203 (282)
T ss_pred HHHHHHCCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 7788888986 577899999999999999999999999999999999999999999999888743 48999999999
Q ss_pred HHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 316 ~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
++++. .||+++++++|++. ..|...++
T Consensus 204 ~~~~~-~~d~i~~l~~G~i~-~~g~~~~~ 230 (282)
T PRK13640 204 IDEAN-MADQVLVLDDGKLL-AQGSPVEI 230 (282)
T ss_pred HHHHH-hCCEEEEEECCEEE-EeCCHHHH
Confidence 99995 79999999999984 45655443
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=336.62 Aligned_cols=205 Identities=27% Similarity=0.400 Sum_probs=169.8
Q ss_pred cEEEEeEEEEeC---------CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-------
Q 006442 97 GVKLENISKSYK---------GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------- 160 (645)
Q Consensus 97 ~i~i~nls~~y~---------~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~------- 160 (645)
+|+++|++|+|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 589999999997 3679999999999999999999999999999999999999999999998752
Q ss_pred ------ceEEEEeccCc--cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCCh
Q 006442 161 ------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (645)
Q Consensus 161 ------~~i~~v~Q~~~--~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (645)
..++|++|++. +.+..|+.+|+...... +. ..+.
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~--------------~~------------------------~~~~ 124 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRH--------------LL------------------------SLDK 124 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHh--------------hc------------------------cCCH
Confidence 25999999973 44567999887421100 00 0011
Q ss_pred hcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCe
Q 006442 233 DTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVP 308 (645)
Q Consensus 233 ~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~t 308 (645)
.....++.+++..+|+.+...++.+.+||||||||++|||||+.+|+||||||||+|||+.++..+.++|++ .+.|
T Consensus 125 ~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~t 204 (268)
T PRK10419 125 AERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTA 204 (268)
T ss_pred HHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcE
Confidence 112335667788889865567889999999999999999999999999999999999999999988887642 4889
Q ss_pred EEEEecCHHHHHhhcCeEEEEcCceeEEeccC
Q 006442 309 MVIISHDRAFLDQLCTKIVETEMGVSRTYEGN 340 (645)
Q Consensus 309 vIivsHd~~~l~~~~d~i~~l~~G~~~~~~g~ 340 (645)
||++||+++++..+||+++++++|++. ..|.
T Consensus 205 iiivsH~~~~i~~~~d~i~~l~~G~i~-~~g~ 235 (268)
T PRK10419 205 CLFITHDLRLVERFCQRVMVMDNGQIV-ETQP 235 (268)
T ss_pred EEEEECCHHHHHHhCCEEEEEECCEEe-eeCC
Confidence 999999999999999999999999874 4444
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=332.86 Aligned_cols=207 Identities=22% Similarity=0.289 Sum_probs=167.8
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEEcCCC-----------
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN----------- 160 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p-----~~G~I~~~~~~----------- 160 (645)
+|+++|+++.|+++++|+++||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|..
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~ 82 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEY 82 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHh
Confidence 58999999999888899999999999999999999999999999999999874 89999987632
Q ss_pred -ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHH
Q 006442 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (645)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (645)
..++|++|++.++. .|+++|+....... .. ......++.+
T Consensus 83 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---------------~~-----------------------~~~~~~~~~~ 123 (250)
T PRK14262 83 RKKVGMVFQKPTPFP-MSIYDNVAFGPRIH---------------GV-----------------------KSKHKLDRIV 123 (250)
T ss_pred hhhEEEEecCCccCc-ccHHHHHHHHHHHc---------------CC-----------------------CcHHHHHHHH
Confidence 25999999988765 89999985321100 00 0000112233
Q ss_pred HhhchhcCCCc---ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 006442 240 SKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (645)
Q Consensus 240 ~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsH 314 (645)
.++++.+|+.. ...++.+.+||||||||++|||||+.+|++|||||||++||+.++.++.++|++ .++|||++||
T Consensus 124 ~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH 203 (250)
T PRK14262 124 EESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTH 203 (250)
T ss_pred HHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 44555556532 246778999999999999999999999999999999999999999999988753 3689999999
Q ss_pred CHHHHHhhcCeEEEEcCceeEEeccChHH
Q 006442 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 315 d~~~l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
+++++..+||+++++++|++. ..|..++
T Consensus 204 ~~~~~~~~~d~i~~l~~G~i~-~~g~~~~ 231 (250)
T PRK14262 204 NIGQAIRIADYIAFMYRGELI-EYGPTRE 231 (250)
T ss_pred CHHHHHHhCCEEEEEECCEEE-EecCHHH
Confidence 999999999999999999984 4455443
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=334.46 Aligned_cols=201 Identities=25% Similarity=0.368 Sum_probs=172.9
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---------------
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------------- 489 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------------- 489 (645)
|+++||++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEK 80 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchh
Confidence 47899999998888999999999999999999999999999999999999999999999997652
Q ss_pred --------cchhccchhhcCCCCCCHHHHHHhhhc-------cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHH
Q 006442 490 --------PNYFEQNQAEALDLDKTVLETVAEAAE-------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF 554 (645)
Q Consensus 490 --------~~~~~q~~~~~l~~~~tv~e~v~~~~~-------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~l 554 (645)
.+|++| ...+.+..|+.+|+..... ......+.++++.+++. +..++.+.+||||||||++|
T Consensus 81 ~~~~~~~~i~~v~q--~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~l 157 (252)
T TIGR03005 81 HLRQMRNKIGMVFQ--SFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLA-DKADHMPAQLSGGQQQRVAI 157 (252)
T ss_pred HHHHHhhCeEEEec--CcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hHhhcChhhcCHHHHHHHHH
Confidence 123333 3345667899999976421 01123577889999994 67789999999999999999
Q ss_pred HHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++.++|||+++|++|+++. .|+.+++.
T Consensus 158 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 235 (252)
T TIGR03005 158 ARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE-QGKPDEIF 235 (252)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHHh
Confidence 99999999999999999999999999999998764 4699999999999999999999999999985 46777664
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=332.83 Aligned_cols=207 Identities=19% Similarity=0.298 Sum_probs=166.7
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEEcCCC-----------
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN----------- 160 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p-----~~G~I~~~~~~----------- 160 (645)
+|+++|+++.|+++++|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~ 82 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLR 82 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHH
Confidence 58999999999988899999999999999999999999999999999999986 59999987632
Q ss_pred ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHH
Q 006442 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (645)
Q Consensus 161 ~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 240 (645)
..++|++|++.++. .|+.||+....... .. ......++++.
T Consensus 83 ~~i~~~~q~~~~~~-~tv~~~l~~~~~~~---------------~~-----------------------~~~~~~~~~~~ 123 (249)
T PRK14253 83 IKVGMVFQKPNPFP-MSIYENVAYGLRAQ---------------GI-----------------------KDKKVLDEVVE 123 (249)
T ss_pred hheeEEecCCCcCc-ccHHHHHHhHHHhc---------------CC-----------------------CchHHHHHHHH
Confidence 24999999988765 89999985321100 00 00001122334
Q ss_pred hhchhcCCCc---ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecC
Q 006442 241 KLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHD 315 (645)
Q Consensus 241 ~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd 315 (645)
++++.+|+.. +..++++.+|||||||||+|||||+.+|+||||||||+|||+.++.++.++|++ .+.|||++||+
T Consensus 124 ~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~ 203 (249)
T PRK14253 124 RSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHS 203 (249)
T ss_pred HHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 4455555431 345677899999999999999999999999999999999999999999888753 36899999999
Q ss_pred HHHHHhhcCeEEEEcCceeEEeccChHH
Q 006442 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 316 ~~~l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
++++..+||+++++++|++. ..|..++
T Consensus 204 ~~~~~~~~d~i~~l~~G~i~-~~g~~~~ 230 (249)
T PRK14253 204 MQQARRISDRTAFFLMGELV-EHDDTQV 230 (249)
T ss_pred HHHHHHhCCEEEEEECCEEE-EeCCHHH
Confidence 99999999999999999984 4455433
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=344.81 Aligned_cols=205 Identities=22% Similarity=0.318 Sum_probs=173.7
Q ss_pred EEEEEeeeeeeCC----eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC----CCeeEEEECceecc------
Q 006442 424 VVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK----PRGGEVLLGEHNVL------ 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~----~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~----p~~G~i~~~g~~~~------ 489 (645)
+|+++|+++.|+. ..+|+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 5899999999975 469999999999999999999999999999999999997 48999999998752
Q ss_pred --------cchhccchhhcCCCCCCHHHHHHhhhc-------cccHHHHHHHHhhcCCCh--hhhccCcCcCCHhHHHHH
Q 006442 490 --------PNYFEQNQAEALDLDKTVLETVAEAAE-------DWRIDDIKGLLGRCNFKA--DMLDRKVSLLSGGEKARL 552 (645)
Q Consensus 490 --------~~~~~q~~~~~l~~~~tv~e~v~~~~~-------~~~~~~~~~~L~~~~l~~--~~~~~~~~~LSgGqkqrv 552 (645)
.+|++|+....+++.+++.+++..... ....+.+.++|+.+|+.. ...++++++|||||||||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv 162 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 245566544456778888877654321 112345788999999953 356889999999999999
Q ss_pred HHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHH
Q 006442 553 AFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQV 628 (645)
Q Consensus 553 ~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~ 628 (645)
+|||||+.+|+||||||||++||+.++..+.++|+++ +.|+|+||||++.+.++||||++|++|++++. |+.+++
T Consensus 163 ~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~-g~~~~~ 241 (326)
T PRK11022 163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET-GKAHDI 241 (326)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-CCHHHH
Confidence 9999999999999999999999999999999988754 46999999999999999999999999999864 555554
Q ss_pred H
Q 006442 629 Q 629 (645)
Q Consensus 629 ~ 629 (645)
+
T Consensus 242 ~ 242 (326)
T PRK11022 242 F 242 (326)
T ss_pred h
Confidence 4
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=349.00 Aligned_cols=196 Identities=26% Similarity=0.395 Sum_probs=166.6
Q ss_pred eEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------------ceEEEEe
Q 006442 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIAFLS 167 (645)
Q Consensus 102 nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------------~~i~~v~ 167 (645)
|++++|++..+ ++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|++
T Consensus 4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~ 81 (354)
T TIGR02142 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVF 81 (354)
T ss_pred EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEe
Confidence 89999987654 8999999999999999999999999999999999999999987632 2499999
Q ss_pred ccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcC
Q 006442 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (645)
Q Consensus 168 Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg 247 (645)
|++.+++.+||+||+...+.. ......++++.++++.+|
T Consensus 82 q~~~l~~~~tv~enl~~~~~~-----------------------------------------~~~~~~~~~~~~~l~~~g 120 (354)
T TIGR02142 82 QEARLFPHLSVRGNLRYGMKR-----------------------------------------ARPSERRISFERVIELLG 120 (354)
T ss_pred cCCccCCCCcHHHHHHHHhhc-----------------------------------------cChhHHHHHHHHHHHHcC
Confidence 999888889999998532110 000112345667888889
Q ss_pred CCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhc
Q 006442 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLC 323 (645)
Q Consensus 248 l~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~ 323 (645)
+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .|+|||++|||++++..+|
T Consensus 121 L~-~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~ 199 (354)
T TIGR02142 121 IG-HLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLA 199 (354)
T ss_pred Ch-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC
Confidence 96 578899999999999999999999999999999999999999999999887743 4899999999999999999
Q ss_pred CeEEEEcCceeEEeccChH
Q 006442 324 TKIVETEMGVSRTYEGNYS 342 (645)
Q Consensus 324 d~i~~l~~G~~~~~~g~~~ 342 (645)
|+|++|++|++. ..|...
T Consensus 200 d~i~~l~~G~i~-~~g~~~ 217 (354)
T TIGR02142 200 DRVVVLEDGRVA-AAGPIA 217 (354)
T ss_pred CEEEEEeCCEEE-EECCHH
Confidence 999999999984 445543
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=310.59 Aligned_cols=207 Identities=24% Similarity=0.345 Sum_probs=175.7
Q ss_pred ccEEEEeEEEEeCCee--eeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----ceEEEEec
Q 006442 96 SGVKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQ 168 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~--vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-----~~i~~v~Q 168 (645)
+++.+++++.+|++++ +|+|+|++|.+||.++++||+||||||||++++|+++|+.|+|.+++.+ ..-|.|+|
T Consensus 2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ 81 (259)
T COG4525 2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQ 81 (259)
T ss_pred ceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEec
Confidence 3578899999998877 9999999999999999999999999999999999999999999988653 35799999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCC
Q 006442 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (645)
Q Consensus 169 ~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (645)
++.+.+.+|+.||+..++.- ..++..+-...+.+.+..+|+
T Consensus 82 ~~~LlPWl~~~dNvafgL~l---------------------------------------~Gi~k~~R~~~a~q~l~~VgL 122 (259)
T COG4525 82 NEALLPWLNVIDNVAFGLQL---------------------------------------RGIEKAQRREIAHQMLALVGL 122 (259)
T ss_pred cCccchhhHHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHHhCc
Confidence 99999999999998644321 112222334556778888999
Q ss_pred CcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhhcC
Q 006442 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCT 324 (645)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L----~~~g~tvIivsHd~~~l~~~~d 324 (645)
. +..++.+.+|||||||||.|||||+.+|++|+||||+.+||+-+++.+.++| +..|+.+++||||++++.-+++
T Consensus 123 ~-~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflat 201 (259)
T COG4525 123 E-GAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLAT 201 (259)
T ss_pred c-cccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhh
Confidence 7 5668899999999999999999999999999999999999999999887764 6679999999999999999999
Q ss_pred eEEEEcCc--ee-EEeccChH
Q 006442 325 KIVETEMG--VS-RTYEGNYS 342 (645)
Q Consensus 325 ~i~~l~~G--~~-~~~~g~~~ 342 (645)
+++++..| ++ ..+.-++.
T Consensus 202 rLvvlsp~pgRvv~~~~~df~ 222 (259)
T COG4525 202 RLVVLSPGPGRVVERLPLDFA 222 (259)
T ss_pred eeEEecCCCceeeEecCCCHH
Confidence 99999865 33 33444444
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=327.34 Aligned_cols=198 Identities=29% Similarity=0.376 Sum_probs=171.7
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc------cchhccchh
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------PNYFEQNQA 498 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------~~~~~q~~~ 498 (645)
|+++|++++|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .+|++|.
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~-- 78 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIES-- 78 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCC--
Confidence 47899999998888999999999999999999999999999999999999999999999997652 2344443
Q ss_pred hcCCCCCCHHHHHHhhhc--cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCH
Q 006442 499 EALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576 (645)
Q Consensus 499 ~~l~~~~tv~e~v~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~ 576 (645)
..+.+..|+.+|+..... .....++..+++.+++. +..++++.+||||||||++||||++.+|++|||||||++||+
T Consensus 79 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~ 157 (223)
T TIGR03740 79 PPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLT-NTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDP 157 (223)
T ss_pred CCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCc-HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCH
Confidence 345566899999875432 22345678899999995 667899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChh
Q 006442 577 PSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626 (645)
Q Consensus 577 ~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~ 626 (645)
.+++.+.++|.++ +.|||++|||++++.++|||+++|++|++... ++.+
T Consensus 158 ~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~-~~~~ 209 (223)
T TIGR03740 158 IGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQ-GKIN 209 (223)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEe-cChh
Confidence 9999999999865 35999999999999999999999999999854 4443
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=338.69 Aligned_cols=203 Identities=27% Similarity=0.367 Sum_probs=170.8
Q ss_pred EEEEeeeeeeCC-----eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------
Q 006442 425 VTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (645)
Q Consensus 425 i~~~~v~~~y~~-----~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (645)
|+++|+++.|++ +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 889999999974 36999999999999999999999999999999999999999999999997652
Q ss_pred ----cchhccchhhcCCCCCCHHHHHHhhhcc--cc----HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHc
Q 006442 490 ----PNYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV 559 (645)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~v~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~ 559 (645)
.+|++|+....+ +..|+.+|+...... .. ...+..+++.+++.....++++.+|||||||||+|||||+
T Consensus 83 ~~~~i~~~~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~ 161 (280)
T PRK13649 83 IRKKVGLVFQFPESQL-FEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILA 161 (280)
T ss_pred HHhheEEEeeChhhhh-ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 134555421123 346999999754321 11 2245678899999645678999999999999999999999
Q ss_pred cCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 560 ~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
.+|++|||||||++||+.+++.+.+.|.++ +.|||+||||++++..+||++++|++|++.. .|..+++.
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 233 (280)
T PRK13649 162 MEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVL-SGKPKDIF 233 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 999999999999999999999999998865 4699999999999999999999999999985 46666554
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=335.89 Aligned_cols=195 Identities=20% Similarity=0.316 Sum_probs=159.8
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEEcCCC----------
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN---------- 160 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~-----p~~G~I~~~~~~---------- 160 (645)
.+|+++|++++|+++.+|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 12 ~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~ 91 (269)
T PRK14259 12 IIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVE 91 (269)
T ss_pred ceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHH
Confidence 46999999999998889999999999999999999999999999999999987 689999987642
Q ss_pred --ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHH
Q 006442 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (645)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (645)
..++|++|++.+++ .||+||+....... . .. ...+++
T Consensus 92 ~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~---------------~------------------------~~-~~~~~~ 130 (269)
T PRK14259 92 VRRRIGMVFQQPNPFP-KSIYENIAFGARIN---------------G------------------------YT-GDMDEL 130 (269)
T ss_pred HhhceEEEccCCccch-hhHHHHHhhhhhhc---------------C------------------------Cc-HHHHHH
Confidence 25999999998766 59999985321000 0 00 001122
Q ss_pred HHhhchhcCCC---cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 006442 239 VSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (645)
Q Consensus 239 i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivs 313 (645)
+.++++.+++. ....++++.+||||||||++|||||+.+|++|||||||+|||+.++.++.++|++ .+.|||++|
T Consensus 131 ~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivt 210 (269)
T PRK14259 131 VERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVT 210 (269)
T ss_pred HHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 23344444432 1346778899999999999999999999999999999999999999999988753 368999999
Q ss_pred cCHHHHHhhcCeEEEEcC
Q 006442 314 HDRAFLDQLCTKIVETEM 331 (645)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~ 331 (645)
|+++++..+||++++|++
T Consensus 211 H~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 211 HNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred CCHHHHHHhcCEEEEEec
Confidence 999999999999999997
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=343.12 Aligned_cols=209 Identities=22% Similarity=0.369 Sum_probs=176.3
Q ss_pred CCCcEEEEEeeeeeeC----CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC---eeEEEECceecc---
Q 006442 420 SGRSVVTIKNLEFGYE----DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR---GGEVLLGEHNVL--- 489 (645)
Q Consensus 420 ~~~~~i~~~~v~~~y~----~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~--- 489 (645)
..+++|+++|+++.|+ ...+++|+||+|++||++||+|+||||||||+++|+|+++|. +|+|.++|.++.
T Consensus 8 ~~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~ 87 (330)
T PRK09473 8 QADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLP 87 (330)
T ss_pred CCCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCC
Confidence 4566899999999995 257999999999999999999999999999999999999996 999999998752
Q ss_pred -----------cchhccchhhcCCCCCCHHHHHHhhhc---ccc----HHHHHHHHhhcCCCh--hhhccCcCcCCHhHH
Q 006442 490 -----------PNYFEQNQAEALDLDKTVLETVAEAAE---DWR----IDDIKGLLGRCNFKA--DMLDRKVSLLSGGEK 549 (645)
Q Consensus 490 -----------~~~~~q~~~~~l~~~~tv~e~v~~~~~---~~~----~~~~~~~L~~~~l~~--~~~~~~~~~LSgGqk 549 (645)
.+|++|+....+++.+++.+++..... ... ...+.++|+.+++.. ...++.+++||||||
T Consensus 88 ~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~ 167 (330)
T PRK09473 88 EKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMR 167 (330)
T ss_pred HHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHH
Confidence 245666654467788899888764321 111 245778899999853 235789999999999
Q ss_pred HHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCCh
Q 006442 550 ARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDY 625 (645)
Q Consensus 550 qrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~ 625 (645)
|||+|||||+.+|+|||+||||++||+.++..+.++|++. +.|+|+||||++.+.++||||++|++|++++. |+.
T Consensus 168 QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~-g~~ 246 (330)
T PRK09473 168 QRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY-GNA 246 (330)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE-CCH
Confidence 9999999999999999999999999999999999988754 56999999999999999999999999999864 666
Q ss_pred hHHH
Q 006442 626 NQVQ 629 (645)
Q Consensus 626 ~~~~ 629 (645)
++++
T Consensus 247 ~~i~ 250 (330)
T PRK09473 247 RDVF 250 (330)
T ss_pred HHHH
Confidence 5554
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=368.39 Aligned_cols=211 Identities=34% Similarity=0.537 Sum_probs=179.2
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCc-cC
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE-VS 173 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~-~~ 173 (645)
.++|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++ ....|||++|++. ++
T Consensus 320 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~-~~~~i~~v~q~~~~~~ 398 (552)
T TIGR03719 320 DKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIG-ETVKLAYVDQSRDALD 398 (552)
T ss_pred CeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEEC-CceEEEEEeCCccccC
Confidence 457999999999988889999999999999999999999999999999999999999999984 4558999999973 66
Q ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccc
Q 006442 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (645)
Q Consensus 174 ~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~ 253 (645)
+..|+.||+....... ... ..+..+.+++..+|+.....
T Consensus 399 ~~~tv~e~l~~~~~~~---------------------------------------~~~--~~~~~~~~~l~~~~l~~~~~ 437 (552)
T TIGR03719 399 PNKTVWEEISGGLDII---------------------------------------QLG--KREVPSRAYVGRFNFKGSDQ 437 (552)
T ss_pred CCCcHHHHHHhhcccc---------------------------------------ccC--cchHHHHHHHHhCCCChhHh
Confidence 7789999985321100 000 00112345678888864457
Q ss_pred cccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcC-c
Q 006442 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM-G 332 (645)
Q Consensus 254 ~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~i~~l~~-G 332 (645)
++++.+|||||||||+|||||+.+|++|||||||+|||+.+++++.++|++.+.|||+||||++++..+||+|+++++ |
T Consensus 438 ~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~ 517 (552)
T TIGR03719 438 QKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDS 517 (552)
T ss_pred cCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCC
Confidence 889999999999999999999999999999999999999999999999988767999999999999999999999986 5
Q ss_pred eeEEeccChHHHHHH
Q 006442 333 VSRTYEGNYSQYVLE 347 (645)
Q Consensus 333 ~~~~~~g~~~~~~~~ 347 (645)
++..+.|++++|...
T Consensus 518 ~~~~~~g~~~~~~~~ 532 (552)
T TIGR03719 518 HVEWFEGNYSEYEED 532 (552)
T ss_pred eEEEeCCCHHHHHHH
Confidence 777789998776443
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=316.18 Aligned_cols=207 Identities=27% Similarity=0.432 Sum_probs=170.1
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc-----------eEE
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KIA 164 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~-----------~i~ 164 (645)
++++++|++..|+...+|++|||++++||+++|+|+||+||||||++|+|+.++.+|+|.++|.+. .|+
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 469999999999999999999999999999999999999999999999999999999999988643 599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
||||.-.+|+.+||.||+..+...... ..... ..++. +-++..
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~------------~~~~~--~~~e~-----------------------v~~lFP 124 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRD------------KEAQE--RDLEE-----------------------VYELFP 124 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhcccc------------ccccc--ccHHH-----------------------HHHHCh
Confidence 999999999999999999643211000 00000 00111 111222
Q ss_pred hcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHH
Q 006442 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLD 320 (645)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~ 320 (645)
.| .+..++...+|||||||.+||||||+.+|++|||||||.||-|.-.+.+.+.++ +.|.||++|.++..++.
T Consensus 125 ~L---ker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al 201 (237)
T COG0410 125 RL---KERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFAL 201 (237)
T ss_pred hH---HHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHH
Confidence 22 145677789999999999999999999999999999999999999999987663 34779999999999999
Q ss_pred hhcCeEEEEcCceeEEeccChHH
Q 006442 321 QLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 321 ~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
+++||.++|+.|++ .+.|+-++
T Consensus 202 ~iaDr~yvle~Gri-v~~G~~~e 223 (237)
T COG0410 202 EIADRGYVLENGRI-VLSGTAAE 223 (237)
T ss_pred HhhCEEEEEeCCEE-EEecCHHH
Confidence 99999999999998 67777544
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=326.91 Aligned_cols=197 Identities=26% Similarity=0.410 Sum_probs=166.3
Q ss_pred EEEEeEEEEeCC----eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-------------
Q 006442 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------- 160 (645)
Q Consensus 98 i~i~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~------------- 160 (645)
|+++|+++.|++ ..+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|..
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 789999999975 679999999999999999999999999999999999999999999997643
Q ss_pred ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHH
Q 006442 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (645)
Q Consensus 161 ~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 240 (645)
..++|++|++.+++..|+.+|+...... . .....+..+..+.
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~---------------~-----------------------~~~~~~~~~~~~~ 123 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALEL---------------Q-----------------------PNLSYQEARERAR 123 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHh---------------c-----------------------cCCCHHHHHHHHH
Confidence 2599999999887778999998532100 0 0011122334567
Q ss_pred hhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCH
Q 006442 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR 316 (645)
Q Consensus 241 ~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~ 316 (645)
++++.+|+. +..++.+.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|++ .++|||++||++
T Consensus 124 ~~l~~~~l~-~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~ 202 (220)
T TIGR02982 124 AMLEAVGLG-DHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDN 202 (220)
T ss_pred HHHHHcCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 788888985 567888999999999999999999999999999999999999999988887742 489999999999
Q ss_pred HHHHhhcCeEEEEcCcee
Q 006442 317 AFLDQLCTKIVETEMGVS 334 (645)
Q Consensus 317 ~~l~~~~d~i~~l~~G~~ 334 (645)
+.. ++||+|+++++|++
T Consensus 203 ~~~-~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 203 RIL-DVADRIVHMEDGKL 219 (220)
T ss_pred HHH-hhCCEEEEEECCEE
Confidence 864 79999999998864
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=331.28 Aligned_cols=202 Identities=28% Similarity=0.399 Sum_probs=170.0
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCC--CCCeeEEEECceecc-----------cc
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE--KPRGGEVLLGEHNVL-----------PN 491 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~--~p~~G~i~~~g~~~~-----------~~ 491 (645)
|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++. .+
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLF 80 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceE
Confidence 47899999999888999999999999999999999999999999999995 799999999997642 12
Q ss_pred hhccchhhcCCCCCCHHHHHHhhhcc---------cc----HHHHHHHHhhcCCChhhhccCcC-cCCHhHHHHHHHHHH
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAAED---------WR----IDDIKGLLGRCNFKADMLDRKVS-LLSGGEKARLAFCKF 557 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~~~---------~~----~~~~~~~L~~~~l~~~~~~~~~~-~LSgGqkqrv~lAra 557 (645)
|++|+ ..+.+..|+.+++...... .. .+.+..+++.+++.....++++. .|||||||||+||||
T Consensus 81 ~v~q~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~a 158 (243)
T TIGR01978 81 LAFQY--PEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQM 158 (243)
T ss_pred eeecc--ccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHH
Confidence 33443 3456678999998653210 01 23467889999996455678887 599999999999999
Q ss_pred HccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhh-CCEEEEEeCCeEEeeCCChhHHH
Q 006442 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQI-VNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 558 l~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~-~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
|+.+|++|||||||++||+.+++.+.+.|+++ +.|||+||||++++..+ ||++++|++|++.. .|+.+++.
T Consensus 159 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 233 (243)
T TIGR01978 159 ALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVK-SGDVELAK 233 (243)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEE-ecCHHHhc
Confidence 99999999999999999999999999999876 46999999999999998 89999999999975 56766543
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=336.42 Aligned_cols=210 Identities=20% Similarity=0.285 Sum_probs=166.0
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEEcCCC---------
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN--------- 160 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~-----p~~G~I~~~~~~--------- 160 (645)
.++|+++|++++|++.++|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 22 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 101 (271)
T PRK14238 22 KVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVE 101 (271)
T ss_pred ceEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHH
Confidence 347999999999988889999999999999999999999999999999999987 699999988642
Q ss_pred ---ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHH
Q 006442 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (645)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (645)
..++|++|++.++. .|+.||+....... . . . +....+.
T Consensus 102 ~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~-~--------------~-~----------------------~~~~~~~ 142 (271)
T PRK14238 102 ELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIH-G--------------I-K----------------------DKKTLDE 142 (271)
T ss_pred HHhhhEEEEecCCcccc-ccHHHHHHHHHHhc-C--------------C-C----------------------cHHHHHH
Confidence 25999999988765 59999986321100 0 0 0 0000111
Q ss_pred HHHhhchhcCCC---cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 006442 238 KVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (645)
Q Consensus 238 ~i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIiv 312 (645)
.+.+++..+++. .+..++++.+||||||||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|||++
T Consensus 143 ~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiv 222 (271)
T PRK14238 143 IVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIV 222 (271)
T ss_pred HHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEE
Confidence 222333333211 1345677899999999999999999999999999999999999999999988753 36899999
Q ss_pred ecCHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
|||++++..+||+++++++|++. ..|...++
T Consensus 223 sH~~~~i~~~~d~i~~l~~G~i~-~~g~~~~~ 253 (271)
T PRK14238 223 THNMQQAARISDKTAFFLNGYVN-EYDDTDKI 253 (271)
T ss_pred EcCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999999984 44655443
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=337.55 Aligned_cols=203 Identities=28% Similarity=0.424 Sum_probs=172.9
Q ss_pred EEEEEeeeeeeCC---eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------c
Q 006442 424 VVTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------P 490 (645)
Q Consensus 424 ~i~~~~v~~~y~~---~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~ 490 (645)
+|+++|+++.|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 6999999999963 45999999999999999999999999999999999999999999999998763 2
Q ss_pred chhccchhhcCCCCCCHHHHHHhhhcc--c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCe
Q 006442 491 NYFEQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (645)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~v~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 564 (645)
+|++|+.. ...+..|+.+|+.+.... . ....+..+++.+++. +..++.+.+||||||||++|||||+.+|++
T Consensus 84 ~~v~q~~~-~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qrv~lAral~~~p~l 161 (279)
T PRK13650 84 GMVFQNPD-NQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQ-DFKEREPARLSGGQKQRVAIAGAVAMRPKI 161 (279)
T ss_pred eEEEcChH-HhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 35555432 234567999999865321 1 124578899999994 678999999999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 565 LVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 565 LlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|||||||++||+.++..+.+.|+++ +.|||+||||++++. +|||+++|++|++.. .|+.+++..
T Consensus 162 LlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G~i~~-~g~~~~~~~ 229 (279)
T PRK13650 162 IILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVES-TSTPRELFS 229 (279)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEE-ECCHHHHHc
Confidence 9999999999999999999988754 569999999999995 799999999999985 466666543
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=324.46 Aligned_cols=186 Identities=25% Similarity=0.402 Sum_probs=161.6
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC---------ceEEEEec
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~---------~~i~~v~Q 168 (645)
|+++|+++.|+++.+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++.. ..++|++|
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGH 80 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEecc
Confidence 478999999998889999999999999999999999999999999999999999999987643 25999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCC
Q 006442 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (645)
Q Consensus 169 ~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (645)
++.+++..|++||+...... ..++++.++++.+|+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~---------------------------------------------~~~~~~~~~l~~~~l 115 (201)
T cd03231 81 APGIKTTLSVLENLRFWHAD---------------------------------------------HSDEQVEEALARVGL 115 (201)
T ss_pred ccccCCCcCHHHHHHhhccc---------------------------------------------ccHHHHHHHHHHcCC
Confidence 98887789999998521000 012344566777788
Q ss_pred CcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCe
Q 006442 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTK 325 (645)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d~ 325 (645)
. +..++++.+||||||||++|||||+.+|++|||||||+|||+.+++++.++|+ +.|.|+|++||+...+..+|++
T Consensus 116 ~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~ 194 (201)
T cd03231 116 N-GFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGAR 194 (201)
T ss_pred h-hhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccce
Confidence 5 45678899999999999999999999999999999999999999999998875 3489999999999999999999
Q ss_pred EEEE
Q 006442 326 IVET 329 (645)
Q Consensus 326 i~~l 329 (645)
++.+
T Consensus 195 ~~~~ 198 (201)
T cd03231 195 ELDL 198 (201)
T ss_pred eEec
Confidence 9876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=337.52 Aligned_cols=207 Identities=24% Similarity=0.330 Sum_probs=171.4
Q ss_pred cEEEEeEEEEeCC---eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceE
Q 006442 97 GVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (645)
Q Consensus 97 ~i~i~nls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i 163 (645)
+|+++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 6999999999974 359999999999999999999999999999999999999999999998643 249
Q ss_pred EEEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhh
Q 006442 164 AFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (645)
Q Consensus 164 ~~v~Q~~~-~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (645)
+|++|++. .++..||.+|+....... ........+++.++
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~---------------------------------------~~~~~~~~~~~~~~ 124 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQ---------------------------------------GIPREEMIKRVDEA 124 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHc---------------------------------------CCCHHHHHHHHHHH
Confidence 99999984 456789999985321000 00111223455677
Q ss_pred chhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---c-CCCeEEEEecCHHH
Q 006442 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---K-QDVPMVIISHDRAF 318 (645)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~-~g~tvIivsHd~~~ 318 (645)
++.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|+ + .|.|||++||++++
T Consensus 125 l~~~~l~-~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~ 203 (277)
T PRK13642 125 LLAVNML-DFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE 203 (277)
T ss_pred HHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 7888885 56788899999999999999999999999999999999999999999988774 2 48999999999999
Q ss_pred HHhhcCeEEEEcCceeEEeccChHHHH
Q 006442 319 LDQLCTKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 319 l~~~~d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
+. .||+|+++++|++. ..|+.+++.
T Consensus 204 ~~-~~d~i~~l~~G~i~-~~g~~~~~~ 228 (277)
T PRK13642 204 AA-SSDRILVMKAGEII-KEAAPSELF 228 (277)
T ss_pred HH-hCCEEEEEECCEEE-EeCCHHHHh
Confidence 97 59999999999974 456655543
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=331.97 Aligned_cols=204 Identities=26% Similarity=0.390 Sum_probs=171.7
Q ss_pred CcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCeeEEEECceecc-------
Q 006442 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL------- 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~~~------- 489 (645)
.++|+++|++++|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 4 PPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred CcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 457999999999988889999999999999999999999999999999999974 58999999997752
Q ss_pred -----cchhccchhhcCCCCCCHHHHHHhhhcc-------ccHHHHHHHHhhcCCCh---hhhccCcCcCCHhHHHHHHH
Q 006442 490 -----PNYFEQNQAEALDLDKTVLETVAEAAED-------WRIDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAF 554 (645)
Q Consensus 490 -----~~~~~q~~~~~l~~~~tv~e~v~~~~~~-------~~~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~l 554 (645)
.+|++|+. .++. .|+.+|+...... ...+++..+++.+++.. ...++++.+|||||||||+|
T Consensus 84 ~~~~~i~~v~q~~--~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l 160 (253)
T PRK14242 84 ELRRRVGMVFQKP--NPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCI 160 (253)
T ss_pred HHhhcEEEEecCC--CCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHH
Confidence 13444442 3434 5999999764311 11245677888888842 34578899999999999999
Q ss_pred HHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++.++||++++|++|++.. .|..+++.
T Consensus 161 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 236 (253)
T PRK14242 161 ARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIE-VGPTEQIF 236 (253)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 99999999999999999999999999999999876 3599999999999999999999999999985 46666654
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=336.14 Aligned_cols=204 Identities=26% Similarity=0.403 Sum_probs=173.7
Q ss_pred EEEEEeeeeeeC-CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------cch
Q 006442 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNY 492 (645)
Q Consensus 424 ~i~~~~v~~~y~-~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~ 492 (645)
+++++|++++|+ .+.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 589999999996 456999999999999999999999999999999999999999999999998653 234
Q ss_pred hccchhhcCCCCCCHHHHHHhhhcc--cc----HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEE
Q 006442 493 FEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (645)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~v~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 566 (645)
++|+... ..+..|+.+|+...... .. ...+..+++.+++. +..++.+..||||||||++|||||+.+|++||
T Consensus 83 v~q~~~~-~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrl~laraL~~~p~lli 160 (277)
T PRK13652 83 VFQNPDD-QIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLE-ELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLV 160 (277)
T ss_pred EecCccc-ccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 4444221 23467999999754321 11 23467889999995 67899999999999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 567 LDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 567 LDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|||||++||+.++..+.+.|++. +.|||++|||++++.++|||+++|++|+++. .|+.+++.+
T Consensus 161 lDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~-~g~~~~~~~ 227 (277)
T PRK13652 161 LDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVA-YGTVEEIFL 227 (277)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEE-ECCHHHHhc
Confidence 99999999999999999988753 5699999999999999999999999999985 577777653
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-40 Score=331.53 Aligned_cols=191 Identities=28% Similarity=0.446 Sum_probs=158.8
Q ss_pred EEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC---------ceEEEEe-ccCccCC
Q 006442 105 KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLS-QEFEVSM 174 (645)
Q Consensus 105 ~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~---------~~i~~v~-Q~~~~~~ 174 (645)
++|+.+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++.. ..++|++ |.+.+++
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 55666789999999999999999999999999999999999999999999987642 2599997 5566767
Q ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCccccc
Q 006442 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (645)
Q Consensus 175 ~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~ 254 (645)
..|+.||+..... +. .........++.++++.+|+. +..+
T Consensus 109 ~~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~~gl~-~~~~ 148 (236)
T cd03267 109 DLPVIDSFYLLAA---------------IY------------------------DLPPARFKKRLDELSELLDLE-ELLD 148 (236)
T ss_pred CCcHHHHHHHHHH---------------Hc------------------------CCCHHHHHHHHHHHHHHcCCh-hHhc
Confidence 8899999742100 00 001112233455677778885 5678
Q ss_pred ccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCeEEEEc
Q 006442 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETE 330 (645)
Q Consensus 255 ~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d~i~~l~ 330 (645)
+++.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||++||+++++..+||++++++
T Consensus 149 ~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~ 228 (236)
T cd03267 149 TPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVID 228 (236)
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 88999999999999999999999999999999999999999999988753 37899999999999999999999999
Q ss_pred CceeE
Q 006442 331 MGVSR 335 (645)
Q Consensus 331 ~G~~~ 335 (645)
+|++.
T Consensus 229 ~G~i~ 233 (236)
T cd03267 229 KGRLL 233 (236)
T ss_pred CCEEE
Confidence 99873
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=329.15 Aligned_cols=201 Identities=24% Similarity=0.371 Sum_probs=170.1
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----------cchh
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PNYF 493 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~~~~ 493 (645)
|+++||++.|+++++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .+|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYV 80 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEe
Confidence 47899999999888999999999999999999999999999999999999999999999997652 1244
Q ss_pred ccchhhcCCCCCCHHHHHHhhhccc---cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCC
Q 006442 494 EQNQAEALDLDKTVLETVAEAAEDW---RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (645)
Q Consensus 494 ~q~~~~~l~~~~tv~e~v~~~~~~~---~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP 570 (645)
+|+ ..+++..|+.+|+....... .......+++.++...+..++++.+||||||||++|||||+.+|++||||||
T Consensus 81 ~q~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEP 158 (230)
T TIGR03410 81 PQG--REIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEP 158 (230)
T ss_pred ccC--CcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 443 34556789999997653221 1223466677776324567899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHH
Q 006442 571 TNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQV 628 (645)
Q Consensus 571 t~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~ 628 (645)
|++||+.++..+.+.|.+. +.|||+||||++++..+||+++++++|+++. .++.+++
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~-~~~~~~~ 219 (230)
T TIGR03410 159 TEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVA-SGAGDEL 219 (230)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHc
Confidence 9999999999999999864 4699999999999999999999999999985 4666654
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=350.60 Aligned_cols=201 Identities=23% Similarity=0.318 Sum_probs=167.7
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------------c
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------------P 490 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------------~ 490 (645)
+++.++...|+...+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 29 ~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~i 108 (400)
T PRK10070 29 LSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKI 108 (400)
T ss_pred ccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCE
Confidence 33344444444444899999999999999999999999999999999999999999999998752 2
Q ss_pred chhccchhhcCCCCCCHHHHHHhhhcc--c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCe
Q 006442 491 NYFEQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (645)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~v~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 564 (645)
+|++|+ ..+++..|+.+|+.+.... + ..+++.++|+.+++. +..++++.+|||||||||+|||||+.+|++
T Consensus 109 gyv~Q~--~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~-~~~~~~~~~LSgGq~QRv~LArAL~~~P~i 185 (400)
T PRK10070 109 AMVFQS--FALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLE-NYAHSYPDELSGGMRQRVGLARALAINPDI 185 (400)
T ss_pred EEEECC--CcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-hhhhcCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 344443 4566788999999865321 1 124577899999995 678999999999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 565 LVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 565 LlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
|||||||++||+.+++.+++.|.++ +.|||+||||++++.++||++++|++|++.. .|..+++.
T Consensus 186 LLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~-~g~~~~l~ 253 (400)
T PRK10070 186 LLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQ-VGTPDEIL 253 (400)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEe-cCCHHHHH
Confidence 9999999999999999999998754 4699999999999999999999999999985 46655554
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=338.92 Aligned_cols=205 Identities=25% Similarity=0.379 Sum_probs=170.9
Q ss_pred cEEEEEeeeeeeCCe-----eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------
Q 006442 423 SVVTIKNLEFGYEDR-----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------- 489 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~-----~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------- 489 (645)
..|+++|++++|+++ .+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 359999999999754 4999999999999999999999999999999999999999999999997642
Q ss_pred -------cchhccchhhcCCCCCCHHHHHHhhhcc--cc----HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHH
Q 006442 490 -------PNYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK 556 (645)
Q Consensus 490 -------~~~~~q~~~~~l~~~~tv~e~v~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAr 556 (645)
.+|++|+....+ +..|+.+|+.+.... .. ...+..+++.+++..+..++++.+|||||||||+|||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar 163 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQL-FQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG 163 (289)
T ss_pred HHHHhccEEEEEeCcchhh-hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence 134444422122 346999999764321 11 1345678899999545678999999999999999999
Q ss_pred HHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 557 al~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
||+.+|++|||||||++||+.+++.+.+.|+++ +.|||+||||++++.++||++++|++|+++.. ++.+++.
T Consensus 164 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~-g~~~~~~ 239 (289)
T PRK13645 164 IIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISI-GSPFEIF 239 (289)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe-CCHHHHh
Confidence 999999999999999999999999999988754 46999999999999999999999999999854 6655543
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=336.94 Aligned_cols=208 Identities=24% Similarity=0.295 Sum_probs=170.6
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCC--------ccEEEEcCCCc-------
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD--------SGNVIKAKSNM------- 161 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~--------~G~I~~~~~~~------- 161 (645)
+|+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|...
T Consensus 1 ml~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred CeEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 388999999999889999999999999999999999999999999999999998 99999987421
Q ss_pred ---eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHH
Q 006442 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (645)
Q Consensus 162 ---~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (645)
.++|++|++..++..|+.||+......... .. ..........
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~-------------~~----------------------~~~~~~~~~~ 125 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHAR-------------RA----------------------GALTHRDGEI 125 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHHhhccccccc-------------cc----------------------ccCCHHHHHH
Confidence 389999998766678999998532100000 00 0000111234
Q ss_pred HHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHcc----C
Q 006442 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL---------QDPDLLLLDEPTNHLDLDTIEWLEGYLGK----Q 305 (645)
Q Consensus 239 i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~---------~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~ 305 (645)
+.++++.+|+. ...++++.+|||||||||+|||||+ .+|++|||||||++||+.+++++.++|++ .
T Consensus 126 ~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~ 204 (272)
T PRK13547 126 AWQALALAGAT-ALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDW 204 (272)
T ss_pred HHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhc
Confidence 56778888886 4678889999999999999999999 59999999999999999999999988753 3
Q ss_pred CCeEEEEecCHHHHHhhcCeEEEEcCceeEEeccCh
Q 006442 306 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNY 341 (645)
Q Consensus 306 g~tvIivsHd~~~l~~~~d~i~~l~~G~~~~~~g~~ 341 (645)
+.|||+||||++++..+||+++++++|++. ..|+.
T Consensus 205 ~~tviiisH~~~~~~~~~d~i~~l~~G~i~-~~g~~ 239 (272)
T PRK13547 205 NLGVLAIVHDPNLAARHADRIAMLADGAIV-AHGAP 239 (272)
T ss_pred CCEEEEEECCHHHHHHhCCEEEEEECCeEE-EecCH
Confidence 899999999999999999999999999874 44553
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=337.07 Aligned_cols=210 Identities=21% Similarity=0.275 Sum_probs=167.9
Q ss_pred CCccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEEcCCC--------
Q 006442 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN-------- 160 (645)
Q Consensus 94 ~~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~-----p~~G~I~~~~~~-------- 160 (645)
..+.|+++|++++|++.++|+|+||+|++|++++|+|+||||||||+++|+|+.+ |++|+|.++|..
T Consensus 36 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred CceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 3457999999999988889999999999999999999999999999999999864 499999987632
Q ss_pred ----ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHH
Q 006442 161 ----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (645)
Q Consensus 161 ----~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (645)
..++|++|++.++. .||.||+...... ... .+....+
T Consensus 116 ~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~---------------~~~-----------------------~~~~~~~ 156 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFP-KSIFDNIAYGPRL---------------HGI-----------------------NDKKQLE 156 (286)
T ss_pred HHhhhcEEEECCCCCCCc-cCHHHHHHhHHHh---------------cCC-----------------------CcHHHHH
Confidence 25999999988765 5999998532100 000 0000112
Q ss_pred HHHHhhchhcCCC---cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEE
Q 006442 237 AKVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311 (645)
Q Consensus 237 ~~i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIi 311 (645)
+++.++++.+|+. .+..++.+.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|++ .+.|||+
T Consensus 157 ~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIi 236 (286)
T PRK14275 157 EIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMI 236 (286)
T ss_pred HHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 2344455555552 2345778899999999999999999999999999999999999999999988753 3579999
Q ss_pred EecCHHHHHhhcCeEEEEcCceeEEeccChHH
Q 006442 312 ISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 312 vsHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
+|||++++.++||++++|++|++. ..|...+
T Consensus 237 vsH~~~~~~~~~d~i~~L~~G~i~-~~g~~~~ 267 (286)
T PRK14275 237 VTHNMQQASRVSDYTMFFYEGVLV-EHAPTAQ 267 (286)
T ss_pred EeCCHHHHHHhCCEEEEEECCEEE-EeCCHHH
Confidence 999999999999999999999984 4455443
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-40 Score=348.61 Aligned_cols=201 Identities=24% Similarity=0.477 Sum_probs=178.6
Q ss_pred cEEEEEeeeeeeCCee-ceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------cc
Q 006442 423 SVVTIKNLEFGYEDRL-LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PN 491 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~-~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~ 491 (645)
..|+++||++.|++++ +|+++||+|++||++||+|+|||||||+||+|+++++ ++|+|.+||.+++ .+
T Consensus 350 ~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig 428 (591)
T KOG0057|consen 350 GSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIG 428 (591)
T ss_pred CcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhhee
Confidence 3499999999998765 9999999999999999999999999999999999999 9999999999873 35
Q ss_pred hhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhh-----------ccCcCcCCHhHHHHHHHHHHHcc
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML-----------DRKVSLLSGGEKARLAFCKFMVK 560 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~-----------~~~~~~LSgGqkqrv~lAral~~ 560 (645)
+++|+ ...++.|+..|+..+....+.+++.+..+++|+. +.. ......|||||||||+||||+++
T Consensus 429 ~VPQd---~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~h-d~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lK 504 (591)
T KOG0057|consen 429 VVPQD---SVLFNDTILYNIKYGNPSASDEEVVEACKRAGLH-DVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLK 504 (591)
T ss_pred EeCCc---ccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcH-HHHHhccccchhhHhhcccccccchHHHHHHHHHHhc
Confidence 66664 3457899999999998888889999999999885 322 23345799999999999999999
Q ss_pred CCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 561 ~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
+|+|+++|||||+||.+++..+.+.+... ++|+|+|.||++++.+ ||+|+++++|++.++ |+.++++.
T Consensus 505 da~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~e~-gth~ell~ 574 (591)
T KOG0057|consen 505 DAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKD-FDKIIVLDNGTVKEY-GTHSELLA 574 (591)
T ss_pred CCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhc-CCEEEEEECCeeEEe-ccHHHHhh
Confidence 99999999999999999999999999863 4699999999999987 999999999999975 78887776
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=331.05 Aligned_cols=213 Identities=21% Similarity=0.286 Sum_probs=168.2
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCC--CCCccEEEEcCCC-----------ceE
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKAKSN-----------MKI 163 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~--~p~~G~I~~~~~~-----------~~i 163 (645)
+|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|++ +|++|+|.++|.+ ..+
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 378999999999888999999999999999999999999999999999995 6999999998743 249
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhc
Q 006442 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (645)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (645)
+|++|++.+++..|..+++...+.. +.. .. .....+.......+.+++
T Consensus 81 ~~~~q~~~~~~~~~~~~~~~~~~~~----------~~~-~~---------------------~~~~~~~~~~~~~~~~~l 128 (248)
T PRK09580 81 FMAFQYPVEIPGVSNQFFLQTALNA----------VRS-YR---------------------GQEPLDRFDFQDLMEEKI 128 (248)
T ss_pred EEEecCchhccchhHHHHHHHhhhh----------hhc-cc---------------------ccccchHHHHHHHHHHHH
Confidence 9999998766655654443211100 000 00 000011122344566778
Q ss_pred hhcCCCcccccccCC-CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHH
Q 006442 244 PELGFTADDGDRLVA-SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (645)
Q Consensus 244 ~~lgl~~~~~~~~~~-~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l 319 (645)
+.++++....++.+. +|||||||||+|||||+.+|++|||||||++||+.+++++.++|+ +.++|||++|||++++
T Consensus 129 ~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~ 208 (248)
T PRK09580 129 ALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRIL 208 (248)
T ss_pred HHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 888886456667675 899999999999999999999999999999999999999988663 4589999999999999
Q ss_pred Hhh-cCeEEEEcCceeEEeccChH
Q 006442 320 DQL-CTKIVETEMGVSRTYEGNYS 342 (645)
Q Consensus 320 ~~~-~d~i~~l~~G~~~~~~g~~~ 342 (645)
..+ ||+|+++++|++ .+.|+++
T Consensus 209 ~~~~~d~i~~l~~g~i-~~~g~~~ 231 (248)
T PRK09580 209 DYIKPDYVHVLYQGRI-VKSGDFT 231 (248)
T ss_pred HhhhCCEEEEEECCeE-EEeCCHH
Confidence 987 899999999988 4567654
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=332.93 Aligned_cols=201 Identities=30% Similarity=0.469 Sum_probs=174.0
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------cchhc
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYFE 494 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~~~ 494 (645)
|+++|+++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .+|++
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVE 81 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEec
Confidence 68999999999889999999999999999999999999999999999999999999999997652 23555
Q ss_pred cchhhcCCCCCCHHHHHHhhhc--------c--ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCe
Q 006442 495 QNQAEALDLDKTVLETVAEAAE--------D--WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (645)
Q Consensus 495 q~~~~~l~~~~tv~e~v~~~~~--------~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 564 (645)
|+. .+.+..|+.+|+..... . .....+.++++.+++ .+..++++.+||||||||++|||||+.+|++
T Consensus 82 q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 158 (256)
T TIGR03873 82 QDS--DTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTEL-SHLADRDMSTLSGGERQRVHVARALAQEPKL 158 (256)
T ss_pred ccC--ccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCc-HhhhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 542 34567899999976321 0 112357788999999 4678999999999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 565 LVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 565 LlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
|||||||++||+.++..+.++|+++ +.|||++|||++++.++||++++|++|+++. .|..+++.
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 225 (256)
T TIGR03873 159 LLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVA-AGPPREVL 225 (256)
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEE-ecCHHHhh
Confidence 9999999999999999999999865 4699999999999999999999999999985 46766653
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=330.49 Aligned_cols=203 Identities=22% Similarity=0.320 Sum_probs=162.3
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC--C---CccEEEEcCCC----------
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--P---DSGNVIKAKSN---------- 160 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~--p---~~G~I~~~~~~---------- 160 (645)
.+|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++ | ++|+|.++|.+
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14255 4 KIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQ 83 (252)
T ss_pred ceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHH
Confidence 36999999999998889999999999999999999999999999999999875 4 58999987642
Q ss_pred --ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHH
Q 006442 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (645)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (645)
..++|++|++.+++ .|+.+|+...+... .. . .....+..
T Consensus 84 ~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~---------------~~-~----------------------~~~~~~~~ 124 (252)
T PRK14255 84 LRKQVGMVFQQPNPFP-FSIYENVIYGLRLA---------------GV-K----------------------DKAVLDEA 124 (252)
T ss_pred hcCeEEEEECCCccCC-CcHHHHHHHHHHHc---------------CC-C----------------------CHHHHHHH
Confidence 25999999988766 79999985321100 00 0 00001112
Q ss_pred HHhhchhcCCC---cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 006442 239 VSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (645)
Q Consensus 239 i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivs 313 (645)
+.+.++.+++. .+..++.+.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+||
T Consensus 125 ~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vs 204 (252)
T PRK14255 125 VETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVT 204 (252)
T ss_pred HHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEE
Confidence 22333334331 1345677899999999999999999999999999999999999999999988753 258999999
Q ss_pred cCHHHHHhhcCeEEEEcCceeEEe
Q 006442 314 HDRAFLDQLCTKIVETEMGVSRTY 337 (645)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~~~ 337 (645)
|+++++.++||+|+++++|++..+
T Consensus 205 H~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14255 205 HSMHQASRISDKTAFFLTGNLIEF 228 (252)
T ss_pred CCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999998543
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=335.91 Aligned_cols=203 Identities=27% Similarity=0.402 Sum_probs=173.6
Q ss_pred EEEEEeeeeeeC-CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc------------c
Q 006442 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------P 490 (645)
Q Consensus 424 ~i~~~~v~~~y~-~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------~ 490 (645)
+|+++|++++|+ .+++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 478999999996 457999999999999999999999999999999999999999999999998752 1
Q ss_pred chhccchhhcCCCCCCHHHHHHhhhcc--c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCe
Q 006442 491 NYFEQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (645)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~v~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 564 (645)
+|++|+.... .+..|+.+|+...... . ....+..+++.+++. +..++++.+||||||||++|||||+.+|++
T Consensus 81 ~~v~q~~~~~-~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LS~Gq~qrv~laral~~~p~l 158 (275)
T PRK13639 81 GIVFQNPDDQ-LFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGME-GFENKPPHHLSGGQKKRVAIAGILAMKPEI 158 (275)
T ss_pred EEEeeChhhh-hccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 3455543222 2457999999754321 1 124577899999994 678999999999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 565 LVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 565 LlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
|||||||++||+.++..+.+.|.++ +.|||+||||++++.++|||+++|++|+++. .|+.+++.
T Consensus 159 lllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 225 (275)
T PRK13639 159 IVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIK-EGTPKEVF 225 (275)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 9999999999999999999999865 4699999999999999999999999999985 47777654
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=330.51 Aligned_cols=204 Identities=24% Similarity=0.358 Sum_probs=172.1
Q ss_pred CcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CeeEEEECceecc-------
Q 006442 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL------- 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p-----~~G~i~~~g~~~~------- 489 (645)
.++|+++|+++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 5 EAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred CceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 4579999999999888899999999999999999999999999999999999987 4899999997652
Q ss_pred -----cchhccchhhcCCCCCCHHHHHHhhhcc---cc----HHHHHHHHhhcCCC---hhhhccCcCcCCHhHHHHHHH
Q 006442 490 -----PNYFEQNQAEALDLDKTVLETVAEAAED---WR----IDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAF 554 (645)
Q Consensus 490 -----~~~~~q~~~~~l~~~~tv~e~v~~~~~~---~~----~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqkqrv~l 554 (645)
.+|++|+ ..+. ..|+.+|+.+.... +. .+.+...++.+++. .+..++++.+|||||||||+|
T Consensus 85 ~~~~~i~~v~q~--~~~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~l 161 (254)
T PRK14273 85 ELRRKIGMVFQT--PNPF-LMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCI 161 (254)
T ss_pred HHhhceEEEeec--cccc-cCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHH
Confidence 1244444 2333 58999999764321 11 23467778888863 245688999999999999999
Q ss_pred HHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
||||+.+|++|||||||++||+.++..+.+.|+++. .|||+||||++++.++|||+++|++|+++. .|..+++.
T Consensus 162 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 237 (254)
T PRK14273 162 ARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEE-ESSTDELF 237 (254)
T ss_pred HHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 999999999999999999999999999999998763 599999999999999999999999999985 46666654
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=330.86 Aligned_cols=205 Identities=20% Similarity=0.284 Sum_probs=167.8
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCC----CccEEEEcCCC--------ceEE
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP----DSGNVIKAKSN--------MKIA 164 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p----~~G~I~~~~~~--------~~i~ 164 (645)
.|+++|++++| ++++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|.+ ..|+
T Consensus 4 ~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~ 82 (254)
T PRK10418 4 QIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIA 82 (254)
T ss_pred EEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEE
Confidence 58999999999 56799999999999999999999999999999999999999 99999998743 3599
Q ss_pred EEeccCc--cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhh
Q 006442 165 FLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (645)
Q Consensus 165 ~v~Q~~~--~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (645)
|++|++. +.+..|+.+++...... ......++++.++
T Consensus 83 ~v~q~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~ 121 (254)
T PRK10418 83 TIMQNPRSAFNPLHTMHTHARETCLA-----------------------------------------LGKPADDATLTAA 121 (254)
T ss_pred EEecCCccccCccccHHHHHHHHHHH-----------------------------------------cCCChHHHHHHHH
Confidence 9999974 33446787775321000 0000012345667
Q ss_pred chhcCCCcc--cccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCH
Q 006442 243 MPELGFTAD--DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR 316 (645)
Q Consensus 243 l~~lgl~~~--~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~ 316 (645)
++.+|+... ..++.+.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .|.|||++||++
T Consensus 122 l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~ 201 (254)
T PRK10418 122 LEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDM 201 (254)
T ss_pred HHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH
Confidence 788888532 46788999999999999999999999999999999999999999999887743 478999999999
Q ss_pred HHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 317 AFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 317 ~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
+++..+||+++++++|++. ..|..+++
T Consensus 202 ~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 228 (254)
T PRK10418 202 GVVARLADDVAVMSHGRIV-EQGDVETL 228 (254)
T ss_pred HHHHHhCCEEEEEECCEEE-EecCHHHH
Confidence 9999999999999999973 55665443
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=331.36 Aligned_cols=205 Identities=22% Similarity=0.335 Sum_probs=172.1
Q ss_pred CCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CeeEEEECceecc------
Q 006442 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL------ 489 (645)
Q Consensus 421 ~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p-----~~G~i~~~g~~~~------ 489 (645)
..++|+++|++++|+++.+|+++||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 9 ~~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 9 AQPQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred cceeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 34579999999999888899999999999999999999999999999999999975 7999999997652
Q ss_pred ------cchhccchhhcCCCCCCHHHHHHhhhcc--cc----HHHHHHHHhhcCCC---hhhhccCcCcCCHhHHHHHHH
Q 006442 490 ------PNYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAF 554 (645)
Q Consensus 490 ------~~~~~q~~~~~l~~~~tv~e~v~~~~~~--~~----~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqkqrv~l 554 (645)
.+|++|. ..+.. .|+.+|+...... .. ...+..+++.+++. .+..++++.+|||||||||+|
T Consensus 89 ~~~~~~i~~v~q~--~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~l 165 (258)
T PRK14268 89 VELRKNVGMVFQK--PNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCI 165 (258)
T ss_pred HHHhhhEEEEecC--CccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHH
Confidence 1234443 23434 8999999764321 11 22466788888873 244688999999999999999
Q ss_pred HHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++.++|||+++|++|++.. .+..+++.
T Consensus 166 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 241 (258)
T PRK14268 166 ARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIE-FGQTRQIF 241 (258)
T ss_pred HHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 99999999999999999999999999999999865 3699999999999999999999999999985 46666654
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=332.45 Aligned_cols=211 Identities=18% Similarity=0.291 Sum_probs=171.2
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcC------C---------
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK------S--------- 159 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~------~--------- 159 (645)
.++|.++|++++|+++.+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 8 ~~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 8 EDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred hhheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 4569999999999999999999999999999999999999999999999999999997766543 2
Q ss_pred -CceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHH
Q 006442 160 -NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (645)
Q Consensus 160 -~~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (645)
...++|++|++.+++..|+.+|+....... . ..+......+
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~---------------~-----------------------~~~~~~~~~~ 129 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSH---------------G-----------------------IKEKREIKKI 129 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhc---------------C-----------------------CCCHHHHHHH
Confidence 135999999998877889999985321000 0 0001112234
Q ss_pred HHhhchhcCCCc---ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 006442 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (645)
Q Consensus 239 i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivs 313 (645)
+.++++.+|+.. +..++.+..||||||||++|||||+.+|++|||||||++||+.++.++.++|.+ .+.|||++|
T Consensus 130 ~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvs 209 (257)
T PRK14246 130 VEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVS 209 (257)
T ss_pred HHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEE
Confidence 556666777642 345778899999999999999999999999999999999999999999988753 368999999
Q ss_pred cCHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
|+++++..+||+++++++|++.. .|..++.
T Consensus 210 h~~~~~~~~~d~v~~l~~g~i~~-~g~~~~~ 239 (257)
T PRK14246 210 HNPQQVARVADYVAFLYNGELVE-WGSSNEI 239 (257)
T ss_pred CCHHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 99999999999999999999853 4554443
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=346.48 Aligned_cols=194 Identities=24% Similarity=0.384 Sum_probs=168.5
Q ss_pred eeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------------cchhccch
Q 006442 432 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------------PNYFEQNQ 497 (645)
Q Consensus 432 ~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------------~~~~~q~~ 497 (645)
+.|+++.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|+
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~- 79 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ- 79 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC-
Confidence 3577888999999999999999999999999999999999999999999999998763 2344443
Q ss_pred hhcCCCCCCHHHHHHhhhcc--c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCC
Q 006442 498 AEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571 (645)
Q Consensus 498 ~~~l~~~~tv~e~v~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt 571 (645)
..+++.+|+.+|+.+.... + ..+++.++|+.+|+. ...++++.+|||||||||+|||||+.+|++|||||||
T Consensus 80 -~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~-~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~ 157 (363)
T TIGR01186 80 -FALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLE-EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAF 157 (363)
T ss_pred -CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 4677889999999875431 1 134578899999994 6789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 572 NHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 572 ~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
++||+.++..+++.+.+. +.|||+||||++++..+||||++|++|+++. .|..+++.
T Consensus 158 saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~-~g~~~ei~ 218 (363)
T TIGR01186 158 SALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQ-VGTPDEIL 218 (363)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEe-eCCHHHHH
Confidence 999999999999988753 5699999999999999999999999999985 46666654
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=331.34 Aligned_cols=208 Identities=18% Similarity=0.257 Sum_probs=167.3
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEEcCCC-----------
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN----------- 160 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p-----~~G~I~~~~~~----------- 160 (645)
.|+++|++++|++.++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 7 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 86 (259)
T PRK14260 7 AIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRL 86 (259)
T ss_pred eEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhh
Confidence 59999999999888899999999999999999999999999999999999985 48999987642
Q ss_pred -ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHH
Q 006442 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (645)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (645)
..|+|++|++.+++ .|+.||+...+... . ..+....++.+
T Consensus 87 ~~~i~~v~q~~~l~~-~tv~enl~~~~~~~---------------~-----------------------~~~~~~~~~~~ 127 (259)
T PRK14260 87 RRQIGMVFQRPNPFP-MSIYENVAYGVRIS---------------A-----------------------KLPQADLDEIV 127 (259)
T ss_pred hhheEEEecccccCC-ccHHHHHHHHHHHh---------------c-----------------------CCCHHHHHHHH
Confidence 25999999988765 89999985322100 0 00001112234
Q ss_pred HhhchhcCCC---cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 006442 240 SKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (645)
Q Consensus 240 ~~ll~~lgl~---~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsH 314 (645)
.+++..+|+. ....++.+.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .++|||++||
T Consensus 128 ~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH 207 (259)
T PRK14260 128 ESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTH 207 (259)
T ss_pred HHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4455555552 1356778899999999999999999999999999999999999999999988753 3689999999
Q ss_pred CHHHHHhhcCeEEEEc-----CceeEEeccChHHH
Q 006442 315 DRAFLDQLCTKIVETE-----MGVSRTYEGNYSQY 344 (645)
Q Consensus 315 d~~~l~~~~d~i~~l~-----~G~~~~~~g~~~~~ 344 (645)
+++++.++||++++++ +|++. ..|+..++
T Consensus 208 ~~~~i~~~~d~i~~l~~~~~~~G~i~-~~~~~~~~ 241 (259)
T PRK14260 208 NMQQATRVSDFTAFFSTDESRIGQMV-EFGVTTQI 241 (259)
T ss_pred CHHHHHHhcCeEEEEeccCCCCceEE-EeCCHHHH
Confidence 9999999999999997 48874 45655443
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=328.86 Aligned_cols=203 Identities=19% Similarity=0.257 Sum_probs=171.0
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----------cc
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PN 491 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~~ 491 (645)
++|+++|++++|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred cEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 4799999999998888999999999999999999999999999999999999999999999998652 12
Q ss_pred hhccchhhcCCCCCCHHHHHHhhhccc----cHHHHHHHHhhc-CCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEE
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAAEDW----RIDDIKGLLGRC-NFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~~~~----~~~~~~~~L~~~-~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 566 (645)
|+.|+ ..+++..|+.+|+....... ....+..+++.+ ++ .+..++++.+|||||||||+|||||+.+|++||
T Consensus 84 ~~~q~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~~~~LS~G~~qrl~la~al~~~p~ill 160 (237)
T PRK11614 84 IVPEG--RRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRL-HERRIQRAGTMSGGEQQMLAIGRALMSQPRLLL 160 (237)
T ss_pred EeccC--cccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHH-HHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 33443 34556689999997642111 122355666766 35 355678899999999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 567 LDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 567 LDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
|||||++||+.+++.+.+.|+++ +.|||++|||++++.++|||+++|++|++.. .|+.++..
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 225 (237)
T PRK11614 161 LDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVL-EDTGDALL 225 (237)
T ss_pred EcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEe-eCCHHHHh
Confidence 99999999999999999998764 4699999999999999999999999999985 57776654
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=329.68 Aligned_cols=204 Identities=25% Similarity=0.353 Sum_probs=173.6
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CeeEEEECceecc---------
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL--------- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p-----~~G~i~~~g~~~~--------- 489 (645)
+|+++|++++|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRR 82 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhc
Confidence 58999999999888899999999999999999999999999999999999974 6999999998752
Q ss_pred -cchhccchhhcCCCCCCHHHHHHhhhc--cc--c----HHHHHHHHhhcCCCh---hhhccCcCcCCHhHHHHHHHHHH
Q 006442 490 -PNYFEQNQAEALDLDKTVLETVAEAAE--DW--R----IDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFCKF 557 (645)
Q Consensus 490 -~~~~~q~~~~~l~~~~tv~e~v~~~~~--~~--~----~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~lAra 557 (645)
.+|++|+ ..+.+..|+.+|+..... .. . .+.+.++++.+++.. +..++++.+|||||||||+||||
T Consensus 83 ~i~~v~q~--~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 160 (250)
T PRK14247 83 RVQMVFQI--PNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARA 160 (250)
T ss_pred cEEEEecc--CccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHH
Confidence 2344544 345567899999975421 10 1 234678899999842 34688999999999999999999
Q ss_pred HccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 558 l~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|+.+|++|||||||++||+.++..+.+.|++. +.|||+||||++++.++||++++|++|++.. .|+.+++..
T Consensus 161 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~~ 234 (250)
T PRK14247 161 LAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVE-WGPTREVFT 234 (250)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEE-ECCHHHHHc
Confidence 99999999999999999999999999999875 3699999999999999999999999999975 477776643
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=330.38 Aligned_cols=204 Identities=25% Similarity=0.329 Sum_probs=172.2
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CeeEEEECceecc--------
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL-------- 489 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p-----~~G~i~~~g~~~~-------- 489 (645)
.+|+++|+++.|+++++|+++||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 3 FAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred ceEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 369999999999888899999999999999999999999999999999999987 4999999998753
Q ss_pred ----cchhccchhhcCCCCCCHHHHHHhhhc--cc--c----HHHHHHHHhhcCCCh---hhhccCcCcCCHhHHHHHHH
Q 006442 490 ----PNYFEQNQAEALDLDKTVLETVAEAAE--DW--R----IDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAF 554 (645)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~v~~~~~--~~--~----~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~l 554 (645)
.+|++|+ ..+.+..|+.+|+..... .. . ...+..+++.+++.. ...++++.+||||||||++|
T Consensus 83 ~~~~i~~~~q~--~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 160 (253)
T PRK14267 83 VRREVGMVFQY--PNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVI 160 (253)
T ss_pred HhhceeEEecC--CccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHH
Confidence 1234443 345567899999976431 10 1 134667888888742 34688999999999999999
Q ss_pred HHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++.. .|+.+++.
T Consensus 161 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 236 (253)
T PRK14267 161 ARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIE-VGPTRKVF 236 (253)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEE-eCCHHHHH
Confidence 99999999999999999999999999999999875 3699999999999999999999999999985 46666654
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=333.15 Aligned_cols=210 Identities=20% Similarity=0.286 Sum_probs=168.3
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEEcCCC---------
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN--------- 160 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~-----p~~G~I~~~~~~--------- 160 (645)
.++|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 23 ~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~ 102 (272)
T PRK14236 23 QTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVA 102 (272)
T ss_pred CcEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHH
Confidence 346999999999988889999999999999999999999999999999999987 489999987632
Q ss_pred ---ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHH
Q 006442 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (645)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (645)
..++|++|++.++.. |+.||+...+... .. ......++
T Consensus 103 ~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---------------~~-----------------------~~~~~~~~ 143 (272)
T PRK14236 103 ELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQ---------------GI-----------------------NNRRVLDE 143 (272)
T ss_pred HHhccEEEEecCCccCcc-cHHHHHHHHHHhc---------------CC-----------------------CcHHHHHH
Confidence 259999999887664 9999985321100 00 00001122
Q ss_pred HHHhhchhcCCCc---ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 006442 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (645)
Q Consensus 238 ~i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIiv 312 (645)
++.++++.+++.. ...++.+.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|++ .+.|||++
T Consensus 144 ~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiiv 223 (272)
T PRK14236 144 AVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIV 223 (272)
T ss_pred HHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 3344455555532 245677899999999999999999999999999999999999999999988753 36899999
Q ss_pred ecCHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
||+++++.++||+|+++++|++. ..|..+++
T Consensus 224 tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 254 (272)
T PRK14236 224 THNMQQAARVSDYTAFMYMGKLV-EYGDTDTL 254 (272)
T ss_pred eCCHHHHHhhCCEEEEEECCEEE-ecCCHHHH
Confidence 99999999999999999999974 44655443
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-40 Score=300.55 Aligned_cols=197 Identities=27% Similarity=0.444 Sum_probs=169.7
Q ss_pred cEEEEeEEEEeCC----eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC------------
Q 006442 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (645)
Q Consensus 97 ~i~i~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~------------ 160 (645)
.|+++++++..+. ..+|++|+|.|++||.++||||+||||||||-+++|+..|++|+|++.|..
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 5899999999864 359999999999999999999999999999999999999999999997753
Q ss_pred --ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHH
Q 006442 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (645)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (645)
.+||||+|.+.+.+++|..||++.... +.. -........
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPle---------------L~g------------------------e~~~~~~~~ 126 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLE---------------LRG------------------------ESSADSRAG 126 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhh---------------hcC------------------------CccccHHHH
Confidence 369999999999999999999863211 000 001123345
Q ss_pred HHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH----ccCCCeEEEEec
Q 006442 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISH 314 (645)
Q Consensus 239 i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L----~~~g~tvIivsH 314 (645)
..++|..+|+. .-++.++.+|||||+|||+||||++..|+||+.||||-+||.++-+.+.++| ++.|.|.|+|||
T Consensus 127 A~~lL~~vGLg-~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTH 205 (228)
T COG4181 127 AKALLEAVGLG-KRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTH 205 (228)
T ss_pred HHHHHHHhCcc-cccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeC
Confidence 66788999997 5667789999999999999999999999999999999999999998888876 567999999999
Q ss_pred CHHHHHhhcCeEEEEcCcee
Q 006442 315 DRAFLDQLCTKIVETEMGVS 334 (645)
Q Consensus 315 d~~~l~~~~d~i~~l~~G~~ 334 (645)
|...+.+ |+|++-|.+|++
T Consensus 206 D~~LA~R-c~R~~r~~~G~l 224 (228)
T COG4181 206 DPQLAAR-CDRQLRLRSGRL 224 (228)
T ss_pred CHHHHHh-hhheeeeeccee
Confidence 9999987 999999999986
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=326.52 Aligned_cols=201 Identities=28% Similarity=0.441 Sum_probs=172.6
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cchhcc
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~q 495 (645)
+|+++|++++|+++. .++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|
T Consensus 1 ~l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 78 (232)
T PRK10771 1 MLKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78 (232)
T ss_pred CeEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEec
Confidence 478999999997643 4999999999999999999999999999999999999999999998652 234454
Q ss_pred chhhcCCCCCCHHHHHHhhhc-c-----ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeC
Q 006442 496 NQAEALDLDKTVLETVAEAAE-D-----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (645)
Q Consensus 496 ~~~~~l~~~~tv~e~v~~~~~-~-----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 569 (645)
+ ..+.+..|+.+|+..... . ....++.++++.+++. +..++++..||||||||++||||++.+|++|||||
T Consensus 79 ~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 155 (232)
T PRK10771 79 E--NNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIE-DLLARLPGQLSGGQRQRVALARCLVREQPILLLDE 155 (232)
T ss_pred c--cccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcH-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 4 345667899999975421 1 1234578899999994 67899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 570 PTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 570 Pt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
||++||+.+++.+.+.|.+. +.|||+||||++++.++||++++|++|++.. .|+.+++..
T Consensus 156 P~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~-~g~~~~~~~ 219 (232)
T PRK10771 156 PFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAW-DGPTDELLS 219 (232)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-eCCHHHHHh
Confidence 99999999999999988754 4599999999999999999999999999984 578777764
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-40 Score=328.23 Aligned_cols=210 Identities=25% Similarity=0.376 Sum_probs=181.2
Q ss_pred cEEEEeEEEEeCCe------------------------eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCcc
Q 006442 97 GVKLENISKSYKGV------------------------TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (645)
Q Consensus 97 ~i~i~nls~~y~~~------------------------~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G 152 (645)
.|+++|+++-|+.+ .-++|+||+|++||+..|.|-+|||||||+|+|.++++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 48999999999641 257899999999999999999999999999999999999999
Q ss_pred EEEEcCCC--------------ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHH
Q 006442 153 NVIKAKSN--------------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218 (645)
Q Consensus 153 ~I~~~~~~--------------~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (645)
+|.++|.+ .++++|||.+.++|..||.||+..++.
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLe------------------------------- 132 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLE------------------------------- 132 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhccee-------------------------------
Confidence 99998764 269999999999999999999864321
Q ss_pred HHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q 006442 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWL 298 (645)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l 298 (645)
...++..+-+++..+.|+.+|+. .+.++++.+|||||||||.|||||+.+|+|||+|||||+|||--+..+
T Consensus 133 --------v~Gv~~~er~~~a~~~l~~VgL~-~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~m 203 (386)
T COG4175 133 --------VQGVPKAEREERALEALELVGLE-GYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEM 203 (386)
T ss_pred --------ecCCCHHHHHHHHHHHHHHcCch-hhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHH
Confidence 01234445567778889999997 688999999999999999999999999999999999999999988888
Q ss_pred HHHH----ccCCCeEEEEecCHHHHHhhcCeEEEEcCceeEEeccChHHHHHH
Q 006442 299 EGYL----GKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (645)
Q Consensus 299 ~~~L----~~~g~tvIivsHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~~~~ 347 (645)
.+.| ++.++|||+||||++++.++.|||..|++|++ ...|...+.+.+
T Consensus 204 QdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~i-vQ~Gtp~eIl~~ 255 (386)
T COG4175 204 QDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEI-VQVGTPEEILLN 255 (386)
T ss_pred HHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeE-EEeCCHHHHHcC
Confidence 7654 45689999999999999999999999999998 566877665544
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=332.51 Aligned_cols=207 Identities=26% Similarity=0.394 Sum_probs=172.2
Q ss_pred CCCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCeeEEEECceecc-----
Q 006442 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL----- 489 (645)
Q Consensus 420 ~~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~~~----- 489 (645)
+++++|+++|++++|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 17 ~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 17 AKEHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred CCCceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 34568999999999998889999999999999999999999999999999999864 68999999997652
Q ss_pred -------cchhccchhhcCCCCCCHHHHHHhhhcc----c---cHHHHHHHHhhcCCCh---hhhccCcCcCCHhHHHHH
Q 006442 490 -------PNYFEQNQAEALDLDKTVLETVAEAAED----W---RIDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARL 552 (645)
Q Consensus 490 -------~~~~~q~~~~~l~~~~tv~e~v~~~~~~----~---~~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv 552 (645)
.+|++|+ ..+.. .|+.+|+...... . ..+.+...++.+++.. +..++++.+||||||||+
T Consensus 97 ~~~~~~~i~~v~q~--~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl 173 (268)
T PRK14248 97 VVNLRREIGMVFQK--PNPFP-KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRL 173 (268)
T ss_pred HHHHhccEEEEecC--CccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHH
Confidence 1344443 23333 5999998754211 1 1234567788887742 346789999999999999
Q ss_pred HHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 553 AFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 553 ~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
+|||||+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||++++.++|||+++|++|+++. .++.+++..
T Consensus 174 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~~~ 252 (268)
T PRK14248 174 CIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVE-YDQTEQIFT 252 (268)
T ss_pred HHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEE-eCCHHHHHh
Confidence 9999999999999999999999999999999999876 3599999999999999999999999999985 466666543
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=336.08 Aligned_cols=201 Identities=24% Similarity=0.319 Sum_probs=172.5
Q ss_pred EEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------------cc
Q 006442 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------------PN 491 (645)
Q Consensus 426 ~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------------~~ 491 (645)
.++|+++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~ 105 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKIS 105 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEE
Confidence 5679999999999999999999999999999999999999999999999999999999997652 12
Q ss_pred hhccchhhcCCCCCCHHHHHHhhhcc------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeE
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 565 (645)
|++|. ..+++..|+.+|+...... ...+++.++++.+++. +..++++.+|||||||||+|||||+.+|++|
T Consensus 106 ~v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrv~lAral~~~p~il 182 (269)
T cd03294 106 MVFQS--FALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLE-GWEHKYPDELSGGMQQRVGLARALAVDPDIL 182 (269)
T ss_pred EEecC--cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 34443 3455678999999764311 1124567889999994 6779999999999999999999999999999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 566 VLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 566 lLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
||||||++||+.+++.+.+.|.++ +.|||++|||++++.++||++++|++|++.. .|..+++.+
T Consensus 183 lLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~~ 250 (269)
T cd03294 183 LMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQ-VGTPEEILT 250 (269)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHHHh
Confidence 999999999999999999998765 4699999999999999999999999999985 466666543
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=352.34 Aligned_cols=208 Identities=27% Similarity=0.430 Sum_probs=177.5
Q ss_pred CCccEEEEeEEEEeCC-----------eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--
Q 006442 94 ISSGVKLENISKSYKG-----------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-- 160 (645)
Q Consensus 94 ~~~~i~i~nls~~y~~-----------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-- 160 (645)
..+.++++|+++.|.. ..+++||||+|.+||++||||++|||||||.|+|+|+.+|++|+|.++|..
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence 4667999999999962 258999999999999999999999999999999999999999999998753
Q ss_pred ----------ceEEEEeccC--ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHH
Q 006442 161 ----------MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQ 228 (645)
Q Consensus 161 ----------~~i~~v~Q~~--~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (645)
.++-+++|+| .+.+..||.+++...+.-. .
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~--------------------------------------~ 398 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIH--------------------------------------G 398 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhh--------------------------------------c
Confidence 3588888988 4567789999875332100 0
Q ss_pred hCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----c
Q 006442 229 AVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----K 304 (645)
Q Consensus 229 ~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~ 304 (645)
.....+.++++.++++.+|++....++++++|||||||||+|||||+.+|++|++|||||+||+.....+.++|+ +
T Consensus 399 ~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e 478 (539)
T COG1123 399 GGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEE 478 (539)
T ss_pred ccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHH
Confidence 001123345788999999999889999999999999999999999999999999999999999999999988874 4
Q ss_pred CCCeEEEEecCHHHHHhhcCeEEEEcCceeEEeccC
Q 006442 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGN 340 (645)
Q Consensus 305 ~g~tvIivsHd~~~l~~~~d~i~~l~~G~~~~~~g~ 340 (645)
.|.|.|+||||+.++.++||||++|.+|++. -.|+
T Consensus 479 ~g~t~lfISHDl~vV~~i~drv~vm~~G~iV-E~G~ 513 (539)
T COG1123 479 LGLTYLFISHDLAVVRYIADRVAVMYDGRIV-EEGP 513 (539)
T ss_pred hCCEEEEEeCCHHHHHhhCceEEEEECCeEE-EeCC
Confidence 6999999999999999999999999999984 3454
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=345.36 Aligned_cols=200 Identities=27% Similarity=0.408 Sum_probs=172.7
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------------
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------------- 489 (645)
||++ |++++|+++.+ ++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 ~l~~-~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 1 MLEL-NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred CeEE-EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence 4777 99999987543 899999999999999999999999999999999999999999997652
Q ss_pred cchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeC
Q 006442 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (645)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 569 (645)
.+|++|+ ..+++.+|+.+|+.+........++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||
T Consensus 78 i~~v~q~--~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDE 154 (352)
T PRK11144 78 IGYVFQD--ARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIE-PLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDE 154 (352)
T ss_pred EEEEcCC--cccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCc-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 1244443 45667899999998764433445688899999995 67899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 570 PTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 570 Pt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++.. .|+.+++..
T Consensus 155 Pts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~-~g~~~~i~~ 218 (352)
T PRK11144 155 PLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKA-FGPLEEVWA 218 (352)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEE-ecCHHHHHh
Confidence 99999999999999988754 4699999999999999999999999999985 466666543
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=322.64 Aligned_cols=193 Identities=23% Similarity=0.411 Sum_probs=167.4
Q ss_pred CCCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-------cch
Q 006442 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------PNY 492 (645)
Q Consensus 420 ~~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------~~~ 492 (645)
.++++|+++|++++|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 7 ~~~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~ 86 (214)
T PRK13543 7 TAPPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAY 86 (214)
T ss_pred CCcceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEE
Confidence 3456899999999998888999999999999999999999999999999999999999999999997653 234
Q ss_pred hccchhhcCCCCCCHHHHHHhhhc---cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeC
Q 006442 493 FEQNQAEALDLDKTVLETVAEAAE---DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (645)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~v~~~~~---~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 569 (645)
+.|+ +.+....|+.+|+..... ....+.+.++++.+++. +..++++..|||||||||+||||++.+|++|||||
T Consensus 87 ~~q~--~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 163 (214)
T PRK13543 87 LGHL--PGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLA-GYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDE 163 (214)
T ss_pred eecC--cccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCCh-hhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 4443 345566799999875432 11234567889999995 56789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeC
Q 006442 570 PTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKG 615 (645)
Q Consensus 570 Pt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~ 615 (645)
||++||+.+++.+.+.|.++ +.|||++|||++++.++||++++++.
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 164 PYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 99999999999999999765 57999999999999999999999864
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=329.00 Aligned_cols=207 Identities=19% Similarity=0.292 Sum_probs=166.8
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEEcCCC------------
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN------------ 160 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~-----p~~G~I~~~~~~------------ 160 (645)
-+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+.+ |++|+|.++|..
T Consensus 6 ~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 85 (251)
T PRK14244 6 ASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLR 85 (251)
T ss_pred EEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHh
Confidence 478999999998889999999999999999999999999999999999986 479999987632
Q ss_pred ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHH
Q 006442 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (645)
Q Consensus 161 ~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 240 (645)
..++|++|++.+++ .|+.+|+...... .... ......+..+.
T Consensus 86 ~~i~~v~q~~~~~~-~tv~~ni~~~~~~---------------~~~~----------------------~~~~~~~~~~~ 127 (251)
T PRK14244 86 AKVGMVFQKPNPFP-KSIYDNVAYGPKL---------------HGLA----------------------KNKKKLDEIVE 127 (251)
T ss_pred hhEEEEecCccccc-CCHHHHHHHHHHh---------------cCCC----------------------CCHHHHHHHHH
Confidence 25999999987765 4999998522100 0000 00011223455
Q ss_pred hhchhcCCCc---ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecC
Q 006442 241 KLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHD 315 (645)
Q Consensus 241 ~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd 315 (645)
++++.+|+.. ...++.+.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++ .++|||++||+
T Consensus 128 ~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~ 207 (251)
T PRK14244 128 KSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHS 207 (251)
T ss_pred HHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 6677777743 235677899999999999999999999999999999999999999999888753 47899999999
Q ss_pred HHHHHhhcCeEEEEcCceeEEeccChHH
Q 006442 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 316 ~~~l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
++++.++||+++++++|++. ..|...+
T Consensus 208 ~~~~~~~~d~i~~l~~G~i~-~~~~~~~ 234 (251)
T PRK14244 208 MKQAKKVSDRVAFFQSGRIV-EYNTTQE 234 (251)
T ss_pred HHHHHhhcCEEEEEECCEEE-EeCCHHH
Confidence 99999999999999999984 4455443
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=325.79 Aligned_cols=201 Identities=29% Similarity=0.485 Sum_probs=154.3
Q ss_pred EEEEeEEEEeCC--eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceEEE
Q 006442 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (645)
Q Consensus 98 i~i~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i~~ 165 (645)
|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|.. ..++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY 82 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 899999999975 569999999999999999999999999999999999999999999998742 25999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchh
Q 006442 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (645)
Q Consensus 166 v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (645)
++|++.+++ .|+.||+....... . ...+...+ +.+ .+...+.....
T Consensus 83 ~~q~~~~~~-~tv~e~l~~~~~~~-~----~~~~~~~l--------------~~~-------------~l~~~~~~~~~- 128 (220)
T cd03245 83 VPQDVTLFY-GTLRDNITLGAPLA-D----DERILRAA--------------ELA-------------GVTDFVNKHPN- 128 (220)
T ss_pred eCCCCcccc-chHHHHhhcCCCCC-C----HHHHHHHH--------------HHc-------------CcHHHHHhccc-
Confidence 999998765 69999985321100 0 00000000 000 01111111100
Q ss_pred cCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhc
Q 006442 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLC 323 (645)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~ 323 (645)
|+... ....+.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++ .+.|||++||+++++ ++|
T Consensus 129 -~~~~~-~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~ 205 (220)
T cd03245 129 -GLDLQ-IGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLV 205 (220)
T ss_pred -cccce-ecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhC
Confidence 22111 2334689999999999999999999999999999999999999999998854 247999999999987 699
Q ss_pred CeEEEEcCceeE
Q 006442 324 TKIVETEMGVSR 335 (645)
Q Consensus 324 d~i~~l~~G~~~ 335 (645)
|+++++++|++.
T Consensus 206 d~v~~l~~g~i~ 217 (220)
T cd03245 206 DRIIVMDSGRIV 217 (220)
T ss_pred CEEEEEeCCeEe
Confidence 999999999873
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-39 Score=329.91 Aligned_cols=205 Identities=27% Similarity=0.385 Sum_probs=172.1
Q ss_pred CCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCeeEEEECceecc------
Q 006442 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL------ 489 (645)
Q Consensus 421 ~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~~~------ 489 (645)
...+|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 10 ~~~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 10 APSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred CCceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 3456999999999998889999999999999999999999999999999999986 58999999997752
Q ss_pred ------cchhccchhhcCCCCCCHHHHHHhhhcc---cc----HHHHHHHHhhcCCC---hhhhccCcCcCCHhHHHHHH
Q 006442 490 ------PNYFEQNQAEALDLDKTVLETVAEAAED---WR----IDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLA 553 (645)
Q Consensus 490 ------~~~~~q~~~~~l~~~~tv~e~v~~~~~~---~~----~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqkqrv~ 553 (645)
.+|++|+. .+. ..|+.+|+...... .. .+++.++++.+++. .+..++.+.+||||||||++
T Consensus 90 ~~~~~~i~~~~q~~--~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 166 (260)
T PRK10744 90 ALLRAKVGMVFQKP--TPF-PMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLC 166 (260)
T ss_pred HHHhcceEEEecCC--ccC-cCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHH
Confidence 12444442 343 37999999764321 11 23567888988873 24568889999999999999
Q ss_pred HHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 554 FCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 554 lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
|||||+.+|++|||||||++||+.+++.+.+.|+++ +.|||+||||++++..+||++++|++|++... ++.+++.
T Consensus 167 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~-g~~~~~~ 243 (260)
T PRK10744 167 IARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEF-GNTDTIF 243 (260)
T ss_pred HHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHHHHH
Confidence 999999999999999999999999999999999876 35999999999999999999999999999864 6666554
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=364.35 Aligned_cols=207 Identities=31% Similarity=0.544 Sum_probs=179.0
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCc--c
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE--V 172 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~--~ 172 (645)
..+|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..+||++|++. +
T Consensus 317 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-~~i~~~~q~~~~~~ 395 (530)
T PRK15064 317 RNALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-ANIGYYAQDHAYDF 395 (530)
T ss_pred CceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-eEEEEEcccccccC
Confidence 34799999999998888999999999999999999999999999999999999999999999863 57999999974 3
Q ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCccc
Q 006442 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (645)
Q Consensus 173 ~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~ 252 (645)
....|+.+|+... .. ....++++.++++.+|+..+.
T Consensus 396 ~~~~t~~~~~~~~-~~-------------------------------------------~~~~~~~~~~~l~~~~l~~~~ 431 (530)
T PRK15064 396 ENDLTLFDWMSQW-RQ-------------------------------------------EGDDEQAVRGTLGRLLFSQDD 431 (530)
T ss_pred CCCCcHHHHHHHh-cc-------------------------------------------CCccHHHHHHHHHHcCCChhH
Confidence 4467998886310 00 001123456778888885457
Q ss_pred ccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcCc
Q 006442 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMG 332 (645)
Q Consensus 253 ~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~i~~l~~G 332 (645)
.++++.+|||||||||+|||||+.+|+||||||||+|||+.+++++.++|++.+.|||+||||++++..+||+++++++|
T Consensus 432 ~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g 511 (530)
T PRK15064 432 IKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPD 511 (530)
T ss_pred hcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 78999999999999999999999999999999999999999999999999887789999999999999999999999999
Q ss_pred eeEEeccChHHHHH
Q 006442 333 VSRTYEGNYSQYVL 346 (645)
Q Consensus 333 ~~~~~~g~~~~~~~ 346 (645)
++..+.|++.++..
T Consensus 512 ~i~~~~g~~~~~~~ 525 (530)
T PRK15064 512 GVVDFSGTYEEYLR 525 (530)
T ss_pred eEEEcCCCHHHHHH
Confidence 98668888876643
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=330.29 Aligned_cols=213 Identities=20% Similarity=0.278 Sum_probs=171.0
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcC--CCCCccEEEEcCCC-----------ce
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ--EEPDSGNVIKAKSN-----------MK 162 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~--~~p~~G~I~~~~~~-----------~~ 162 (645)
++|+++|++++|+++.+|+|+||+|++|++++|+|+||||||||+++|+|+ ++|++|+|.++|.. ..
T Consensus 6 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 85 (252)
T CHL00131 6 PILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLG 85 (252)
T ss_pred ceEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheee
Confidence 369999999999888899999999999999999999999999999999998 58999999987632 14
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhh
Q 006442 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (645)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (645)
++|++|++.+++..|+.+|+...+.... ..... . .........++.++
T Consensus 86 ~~~~~q~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~-~--------------------~~~~~~~~~~~~~~ 133 (252)
T CHL00131 86 IFLAFQYPIEIPGVSNADFLRLAYNSKR-----------KFQGL-P--------------------ELDPLEFLEIINEK 133 (252)
T ss_pred EEEEeccccccccccHHHHHHHhhhhhh-----------ccccc-c--------------------cccHHHHHHHHHHH
Confidence 8899999888777899888743211000 00000 0 00111223456677
Q ss_pred chhcCCCcccccccCC-CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHH
Q 006442 243 MPELGFTADDGDRLVA-SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAF 318 (645)
Q Consensus 243 l~~lgl~~~~~~~~~~-~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~ 318 (645)
+..+|+.....++++. .|||||||||+|||||+.+|+||||||||+|||+.++.++.++|+ +.|.|||++|||+++
T Consensus 134 l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~ 213 (252)
T CHL00131 134 LKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL 213 (252)
T ss_pred HHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 8888886445677776 599999999999999999999999999999999999999998775 358999999999999
Q ss_pred HHhh-cCeEEEEcCceeEEeccCh
Q 006442 319 LDQL-CTKIVETEMGVSRTYEGNY 341 (645)
Q Consensus 319 l~~~-~d~i~~l~~G~~~~~~g~~ 341 (645)
+..+ ||+++++++|++. +.|+.
T Consensus 214 ~~~~~~d~i~~l~~G~i~-~~~~~ 236 (252)
T CHL00131 214 LDYIKPDYVHVMQNGKII-KTGDA 236 (252)
T ss_pred HHhhhCCEEEEEeCCEEE-EecCh
Confidence 9887 8999999999883 55554
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=333.76 Aligned_cols=202 Identities=25% Similarity=0.355 Sum_probs=170.2
Q ss_pred EEEEEeeeeeeC-CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----------cc
Q 006442 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PN 491 (645)
Q Consensus 424 ~i~~~~v~~~y~-~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~~ 491 (645)
+|+++|++++|+ ++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 478999999995 467999999999999999999999999999999999999999999999998752 13
Q ss_pred hhccchhhcCCCCCCHHHHHHhhhccc------cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeE
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 565 (645)
|++|+... ..+..|+.+|+......+ ..+.+..+++.+++. +..++++..|||||||||+|||||+.+|+||
T Consensus 81 ~v~q~~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~ll 158 (274)
T PRK13644 81 IVFQNPET-QFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLE-KYRHRSPKTLSGGQGQCVALAGILTMEPECL 158 (274)
T ss_pred EEEEChhh-hcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-HHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 44444221 234679999997643211 123567889999994 6778999999999999999999999999999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 566 VLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 566 lLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
||||||++||+.++..+.+.|+++ +.|||++|||++.+. .|||+++|++|++.. .|+.+++.
T Consensus 159 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i~~-~g~~~~~~ 223 (274)
T PRK13644 159 IFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRGKIVL-EGEPENVL 223 (274)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEEECCEEEE-ECCHHHHh
Confidence 999999999999999999999754 469999999999995 599999999999985 46666553
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=305.66 Aligned_cols=209 Identities=24% Similarity=0.423 Sum_probs=179.8
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC---------------
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------- 160 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------------- 160 (645)
+.|+++|+.|+||...+|++|||+-++|+++.|||.+||||||+||||.=+..|+.|.|.++|..
T Consensus 5 ~~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad 84 (256)
T COG4598 5 NALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPAD 84 (256)
T ss_pred cceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCC
Confidence 45999999999999999999999999999999999999999999999999999999999987631
Q ss_pred --------ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCCh
Q 006442 161 --------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (645)
Q Consensus 161 --------~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (645)
.+.++|+|+++++..+||.||++.+--.- -.+..
T Consensus 85 ~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhV--------------------------------------Lg~~k 126 (256)
T COG4598 85 KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHV--------------------------------------LGVSK 126 (256)
T ss_pred HHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHh--------------------------------------hcCCH
Confidence 24899999999999999999986431110 01233
Q ss_pred hcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH---ccCCCeE
Q 006442 233 DTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPM 309 (645)
Q Consensus 233 ~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L---~~~g~tv 309 (645)
.+..++...+|.++|+. +..+.++..|||||+||++|||||+.+|+++|+|||||+|||+-...+.+.+ .+.|+|+
T Consensus 127 ~ea~e~Ae~~L~kVGi~-ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTM 205 (256)
T COG4598 127 AEAIERAEKYLAKVGIA-EKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTM 205 (256)
T ss_pred HHHHHHHHHHHHHhCch-hhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeE
Confidence 34456677889999997 6778999999999999999999999999999999999999999888777654 5679999
Q ss_pred EEEecCHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 310 VIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 310 IivsHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
++|||.+.|+.+++++++++.+|.+ .-.|...+.
T Consensus 206 v~VTHEM~FAR~Vss~v~fLh~G~i-EE~G~P~qv 239 (256)
T COG4598 206 VVVTHEMGFARDVSSHVIFLHQGKI-EEEGPPEQV 239 (256)
T ss_pred EEEeeehhHHHhhhhheEEeeccee-cccCChHHH
Confidence 9999999999999999999999987 445665443
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=369.17 Aligned_cols=211 Identities=21% Similarity=0.348 Sum_probs=176.2
Q ss_pred CccEEEEeEEEEeCC-----------eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC---
Q 006442 95 SSGVKLENISKSYKG-----------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--- 160 (645)
Q Consensus 95 ~~~i~i~nls~~y~~-----------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--- 160 (645)
.++|+++|+++.|+. ..+|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|..
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence 357999999999961 469999999999999999999999999999999999999999999997642
Q ss_pred ----------ceEEEEeccC--ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHH
Q 006442 161 ----------MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQ 228 (645)
Q Consensus 161 ----------~~i~~v~Q~~--~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (645)
..|+|++|++ .+++..||.+|+...+.. ..
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~---------------~~----------------------- 432 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRV---------------HG----------------------- 432 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHH---------------cC-----------------------
Confidence 2599999997 466788999998532100 00
Q ss_pred hCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----c
Q 006442 229 AVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----K 304 (645)
Q Consensus 229 ~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~ 304 (645)
........+++.++|+.+|+.....++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+ +
T Consensus 433 ~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~ 512 (623)
T PRK10261 433 LLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRD 512 (623)
T ss_pred CCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 000112235677889999996557889999999999999999999999999999999999999999999998873 3
Q ss_pred CCCeEEEEecCHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 305 ~g~tvIivsHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
.|.|||+||||++++..+||+|++|++|++. ..|...+.
T Consensus 513 ~g~tvi~isHdl~~v~~~~dri~vl~~G~iv-~~g~~~~i 551 (623)
T PRK10261 513 FGIAYLFISHDMAVVERISHRVAVMYLGQIV-EIGPRRAV 551 (623)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecCHHHH
Confidence 5899999999999999999999999999984 45654443
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=330.64 Aligned_cols=208 Identities=18% Similarity=0.270 Sum_probs=163.5
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEEcCCC---------
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN--------- 160 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~-----p~~G~I~~~~~~--------- 160 (645)
.++|+++|++++|++.++|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|..
T Consensus 8 ~~~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 8 ETVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred ceEEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 447999999999998889999999999999999999999999999999999976 489999987642
Q ss_pred ---ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHH
Q 006442 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (645)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (645)
..|+|++|++.+++ .|+.+|+....... .. . ....+
T Consensus 88 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~~-----------~----------------------------~~~~~ 126 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFP-KSIYDNIAYGARIN-GY-----------K----------------------------GDMDE 126 (264)
T ss_pred HHhhhEEEEccCCcccc-ccHHHHHHhhhhhc-Cc-----------c----------------------------hHHHH
Confidence 24999999987765 59999985321100 00 0 00011
Q ss_pred HHHhhchhcCCC---cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 006442 238 KVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (645)
Q Consensus 238 ~i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIiv 312 (645)
++.+++..+++. ....++.+.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||++
T Consensus 127 ~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~v 206 (264)
T PRK14243 127 LVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIV 206 (264)
T ss_pred HHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 122223333331 1234677899999999999999999999999999999999999999999988753 35899999
Q ss_pred ecCHHHHHhhcCeEEEEc---------CceeEEeccChHHH
Q 006442 313 SHDRAFLDQLCTKIVETE---------MGVSRTYEGNYSQY 344 (645)
Q Consensus 313 sHd~~~l~~~~d~i~~l~---------~G~~~~~~g~~~~~ 344 (645)
||+++++.++||++++++ +|++. ..|...+.
T Consensus 207 tH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~-~~~~~~~~ 246 (264)
T PRK14243 207 THNMQQAARVSDMTAFFNVELTEGGGRYGYLV-EFDRTEKI 246 (264)
T ss_pred ecCHHHHHHhCCEEEEEecccccccccCceEE-EeCCHHHH
Confidence 999999999999999998 68773 44554443
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=328.23 Aligned_cols=208 Identities=22% Similarity=0.287 Sum_probs=166.2
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC--C---CccEEEEcCCC----------
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--P---DSGNVIKAKSN---------- 160 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~--p---~~G~I~~~~~~---------- 160 (645)
++|+++|++|+|+++.+|+|+||+|++|++++|+|+||||||||+++|+|+.+ | ++|+|.++|.+
T Consensus 5 ~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 84 (253)
T PRK14261 5 IILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVA 84 (253)
T ss_pred ceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhh
Confidence 46999999999998889999999999999999999999999999999999875 3 48999987632
Q ss_pred --ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHH
Q 006442 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (645)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (645)
..|+|++|++.++. .||+||+...... ... .+....+..
T Consensus 85 ~~~~i~~~~q~~~~~~-~tv~eni~~~~~~---------------~~~-----------------------~~~~~~~~~ 125 (253)
T PRK14261 85 LRRKIGMVFQRPNPFP-KSIYENVAYGPRI---------------HGE-----------------------KNKKTLDTI 125 (253)
T ss_pred hhceEEEEecCCccCc-ccHHHHHHhhHHh---------------cCC-----------------------CCHHHHHHH
Confidence 24999999988765 5999998532100 000 000111223
Q ss_pred HHhhchhcCCCc---ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 006442 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (645)
Q Consensus 239 i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivs 313 (645)
+.++++.+++.. ...++.+.+||||||||++|||||+.+|++|||||||+|||+.+++++.++|++ .++|||++|
T Consensus 126 ~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~s 205 (253)
T PRK14261 126 VEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVT 205 (253)
T ss_pred HHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEE
Confidence 444455555421 235678899999999999999999999999999999999999999999888753 368999999
Q ss_pred cCHHHHHhhcCeEEEEcCceeEEeccChHH
Q 006442 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
|+++++..+||+++++++|++. ..|...+
T Consensus 206 h~~~~~~~~~d~v~~l~~G~i~-~~g~~~~ 234 (253)
T PRK14261 206 HNMQQAARVSDYTGFMYLGKLI-EFDKTTQ 234 (253)
T ss_pred cCHHHHHhhCCEEEEEECCEEE-EcCCHHH
Confidence 9999999999999999999984 4455443
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-39 Score=326.24 Aligned_cols=207 Identities=22% Similarity=0.386 Sum_probs=172.3
Q ss_pred EEEEeEEEEeCC----eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC-C----CccEEEEcCCC--------
Q 006442 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-P----DSGNVIKAKSN-------- 160 (645)
Q Consensus 98 i~i~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~-p----~~G~I~~~~~~-------- 160 (645)
++++|++.+|.. .++++||||+|++||++||||.+||||||+.++|.|+++ | .+|+|.++|.+
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 789999999953 469999999999999999999999999999999999998 4 47899998752
Q ss_pred ------ceEEEEeccCc--cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhC-C
Q 006442 161 ------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV-N 231 (645)
Q Consensus 161 ------~~i~~v~Q~~~--~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 231 (645)
..|+|+||+|. +.+..||.+.+...+... ... .
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h--------------------------------------~~~~~ 123 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLH--------------------------------------GKGLS 123 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHh--------------------------------------hcchh
Confidence 36999999983 445667777664322100 000 1
Q ss_pred hhcHHHHHHhhchhcCCCcc--cccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cC
Q 006442 232 LDTLDAKVSKLMPELGFTAD--DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQ 305 (645)
Q Consensus 232 ~~~~~~~i~~ll~~lgl~~~--~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~ 305 (645)
..+..+++.++|+.+|++.. ..+.++++|||||||||.||.||+.+|++||.||||++||+....++.++|+ +.
T Consensus 124 ~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~ 203 (316)
T COG0444 124 KKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREK 203 (316)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhc
Confidence 22345678889999999865 7899999999999999999999999999999999999999999999988774 47
Q ss_pred CCeEEEEecCHHHHHhhcCeEEEEcCceeEEeccChHH
Q 006442 306 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 306 g~tvIivsHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
|.++|+||||+..+.++||||++|..|++.. .|+..+
T Consensus 204 ~~aiilITHDl~vva~~aDri~VMYaG~iVE-~g~~~~ 240 (316)
T COG0444 204 GTALILITHDLGVVAEIADRVAVMYAGRIVE-EGPVEE 240 (316)
T ss_pred CCEEEEEeCCHHHHHHhcceEEEEECcEEEE-eCCHHH
Confidence 9999999999999999999999999999853 455433
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=328.99 Aligned_cols=208 Identities=21% Similarity=0.262 Sum_probs=168.3
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCC-----ccEEEEcCCC-----------
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-----SGNVIKAKSN----------- 160 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~-----~G~I~~~~~~----------- 160 (645)
.|+++|++++|++..+|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.++|.+
T Consensus 7 ~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~ 86 (261)
T PRK14258 7 AIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRL 86 (261)
T ss_pred eEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHh
Confidence 599999999998888999999999999999999999999999999999999985 8999887632
Q ss_pred -ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHH
Q 006442 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (645)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (645)
..++|++|++.+++ .|+.||+...... ... .+.....+++
T Consensus 87 ~~~i~~~~q~~~l~~-~tv~enl~~~~~~---------------~~~-----------------------~~~~~~~~~~ 127 (261)
T PRK14258 87 RRQVSMVHPKPNLFP-MSVYDNVAYGVKI---------------VGW-----------------------RPKLEIDDIV 127 (261)
T ss_pred hccEEEEecCCccCc-ccHHHHHHHHHHh---------------cCC-----------------------CcHHHHHHHH
Confidence 24999999988765 8999998532100 000 0000112334
Q ss_pred HhhchhcCCC---cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEE
Q 006442 240 SKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVII 312 (645)
Q Consensus 240 ~~ll~~lgl~---~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIiv 312 (645)
.++++.+++. .+..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++ .+.|||+|
T Consensus 128 ~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiiv 207 (261)
T PRK14258 128 ESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIV 207 (261)
T ss_pred HHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 4556666653 1346788899999999999999999999999999999999999999999887753 48999999
Q ss_pred ecCHHHHHhhcCeEEEEcC-----ceeEEeccChHHH
Q 006442 313 SHDRAFLDQLCTKIVETEM-----GVSRTYEGNYSQY 344 (645)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~-----G~~~~~~g~~~~~ 344 (645)
|||++++.++||+|+++++ |++ .+.|...+.
T Consensus 208 sH~~~~i~~~~d~i~~l~~~~~~~G~i-~~~~~~~~~ 243 (261)
T PRK14258 208 SHNLHQVSRLSDFTAFFKGNENRIGQL-VEFGLTKKI 243 (261)
T ss_pred ECCHHHHHHhcCEEEEEccCCCcCceE-EEeCCHHHH
Confidence 9999999999999999999 887 355655443
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=331.66 Aligned_cols=203 Identities=25% Similarity=0.450 Sum_probs=171.6
Q ss_pred EEEEEeeeeeeC---------CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----
Q 006442 424 VVTIKNLEFGYE---------DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~---------~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----- 489 (645)
+|+++||++.|+ ++.+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 689999999997 478999999999999999999999999999999999999999999999998652
Q ss_pred --------cchhccchhhcCCCCCCHHHHHHhhhc---c----ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHH
Q 006442 490 --------PNYFEQNQAEALDLDKTVLETVAEAAE---D----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF 554 (645)
Q Consensus 490 --------~~~~~q~~~~~l~~~~tv~e~v~~~~~---~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~l 554 (645)
.+|++|+....+.+..++.+++..... . .....+.++++.+++.....++++..||||||||++|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~l 162 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCL 162 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHH
Confidence 234455432235566899998754221 1 1123578899999996457789999999999999999
Q ss_pred HHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhH
Q 006442 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQ 627 (645)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~ 627 (645)
||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++.++||++++|++|++... |+.++
T Consensus 163 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~-g~~~~ 238 (268)
T PRK10419 163 ARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVET-QPVGD 238 (268)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeee-CChhh
Confidence 99999999999999999999999999999988754 46999999999999999999999999999753 54444
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=332.69 Aligned_cols=203 Identities=27% Similarity=0.443 Sum_probs=173.2
Q ss_pred cEEEEEeeeeeeCC--eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------c
Q 006442 423 SVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------P 490 (645)
Q Consensus 423 ~~i~~~~v~~~y~~--~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~ 490 (645)
++|+++||++.|++ +++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 47999999999974 56999999999999999999999999999999999999999999999998763 2
Q ss_pred chhccchhhcCCCCCCHHHHHHhhhccc--c----HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCe
Q 006442 491 NYFEQNQAEALDLDKTVLETVAEAAEDW--R----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (645)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~v~~~~~~~--~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 564 (645)
+|++|+.. .+.+..|+.+|+....... . ...+..+++.+|+. +..++++..|||||||||+|||||+.+|+|
T Consensus 84 ~~~~q~~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrv~laral~~~p~l 161 (279)
T PRK13635 84 GMVFQNPD-NQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGME-DFLNREPHRLSGGQKQRVAIAGVLALQPDI 161 (279)
T ss_pred EEEEeCHH-HhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 35555432 2445679999997643211 1 23578889999995 678999999999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 565 LVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 565 LlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
|||||||++||+.++..+.+.|+++ +.|||+||||++++.. |||+++|++|++.. .|+.+++.
T Consensus 162 llLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~-~d~i~~l~~G~i~~-~g~~~~~~ 228 (279)
T PRK13635 162 IILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILE-EGTPEEIF 228 (279)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHh
Confidence 9999999999999999999999854 4599999999999975 99999999999975 46666554
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-39 Score=329.91 Aligned_cols=205 Identities=23% Similarity=0.347 Sum_probs=172.3
Q ss_pred CCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CeeEEEECceecc------
Q 006442 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL------ 489 (645)
Q Consensus 421 ~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p-----~~G~i~~~g~~~~------ 489 (645)
..+.|+++|+++.|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 16 ~~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~ 95 (267)
T PRK14235 16 TEIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95 (267)
T ss_pred CCceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccch
Confidence 45579999999999988899999999999999999999999999999999999975 8999999997752
Q ss_pred ------cchhccchhhcCCCCCCHHHHHHhhhc--c-----cc-HHHHHHHHhhcCCCh---hhhccCcCcCCHhHHHHH
Q 006442 490 ------PNYFEQNQAEALDLDKTVLETVAEAAE--D-----WR-IDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARL 552 (645)
Q Consensus 490 ------~~~~~q~~~~~l~~~~tv~e~v~~~~~--~-----~~-~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv 552 (645)
.+|++|. ..+.. .|+.+|+..... . .. ..++..+++.+++.. +..++++.+|||||||||
T Consensus 96 ~~~~~~i~~v~q~--~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv 172 (267)
T PRK14235 96 VELRARVGMVFQK--PNPFP-KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRL 172 (267)
T ss_pred HHHhhceEEEecC--CCCCC-CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHH
Confidence 1234443 23333 599999976431 1 11 234677899999852 245788999999999999
Q ss_pred HHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 553 AFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 553 ~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
+|||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++.. .+..++++
T Consensus 173 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 250 (267)
T PRK14235 173 CIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVE-VGDTEKMF 250 (267)
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999999999999999999999876 3599999999999999999999999999985 46666654
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=323.98 Aligned_cols=201 Identities=29% Similarity=0.451 Sum_probs=173.0
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cchhccc
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQN 496 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~q~ 496 (645)
|+++|++++|+++.+|+++||+|++|++++|+|+||||||||+++|+|+++|.+|+|.++|.++. .+|.+|+
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQN 80 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecc
Confidence 46899999999889999999999999999999999999999999999999999999999998653 2344444
Q ss_pred hhhcCCCCCCHHHHHHhhhcc------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCC
Q 006442 497 QAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (645)
Q Consensus 497 ~~~~l~~~~tv~e~v~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP 570 (645)
..+....|+.+|+...... ....++..+++.+++. +..++.+..||+|||||++|||||+.+|++||||||
T Consensus 81 --~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP 157 (232)
T cd03300 81 --YALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLE-GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEP 157 (232)
T ss_pred --cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3455568999998754321 1133567889999995 678899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 571 TNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 571 t~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
|++||+.++..+.++|+++ +.|||++|||++++.++|||+++|++|++... ++.+++.
T Consensus 158 ~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~-~~~~~~~ 219 (232)
T cd03300 158 LGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQI-GTPEEIY 219 (232)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEec-CCHHHHH
Confidence 9999999999999999764 46999999999999999999999999999854 5655544
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=328.06 Aligned_cols=204 Identities=26% Similarity=0.358 Sum_probs=171.5
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CeeEEEECceecc---------
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL--------- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p-----~~G~i~~~g~~~~--------- 489 (645)
+|+++|++++|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~ 83 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence 58999999999888899999999999999999999999999999999999974 6999999997652
Q ss_pred ---cchhccchhhcCCCCCCHHHHHHhhhcc---cc----HHHHHHHHhhcCCC---hhhhccCcCcCCHhHHHHHHHHH
Q 006442 490 ---PNYFEQNQAEALDLDKTVLETVAEAAED---WR----IDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAFCK 556 (645)
Q Consensus 490 ---~~~~~q~~~~~l~~~~tv~e~v~~~~~~---~~----~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqkqrv~lAr 556 (645)
.+|+.|+ ..+.+..|+.+|+...... .. .+.+..+++.+++. .+..++++.+|||||||||+|||
T Consensus 84 ~~~i~~~~q~--~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 161 (258)
T PRK14241 84 RRTIGMVFQR--PNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIAR 161 (258)
T ss_pred hcceEEEccc--cccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHH
Confidence 1234443 3455678999999764321 11 23456778888873 24568899999999999999999
Q ss_pred HHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEe------CCeEEeeCCChhHH
Q 006442 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVK------GSNLQDYAGDYNQV 628 (645)
Q Consensus 557 al~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~------~g~i~~~~~~~~~~ 628 (645)
||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++.++|||+++|+ +|+++. .++.+++
T Consensus 162 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~-~~~~~~~ 240 (258)
T PRK14241 162 AIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE-IDDTEKI 240 (258)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe-cCCHHHH
Confidence 999999999999999999999999999999875 3599999999999999999999997 799985 4676665
Q ss_pred HH
Q 006442 629 QS 630 (645)
Q Consensus 629 ~~ 630 (645)
..
T Consensus 241 ~~ 242 (258)
T PRK14241 241 FS 242 (258)
T ss_pred Hh
Confidence 43
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=333.25 Aligned_cols=209 Identities=23% Similarity=0.360 Sum_probs=166.9
Q ss_pred cEEEEeEEEEeC-CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-------ceEEEEec
Q 006442 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIAFLSQ 168 (645)
Q Consensus 97 ~i~i~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-------~~i~~v~Q 168 (645)
.|+++|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|++|
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q 85 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ 85 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecc
Confidence 489999999995 5779999999999999999999999999999999999999999999998743 25999999
Q ss_pred cCccC--CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhc
Q 006442 169 EFEVS--MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (645)
Q Consensus 169 ~~~~~--~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (645)
++.+. ...++.+++.......... . .......+.++.++++.+
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~~~~~~~----------~-------------------------~~~~~~~~~~~~~~l~~~ 130 (272)
T PRK15056 86 SEEVDWSFPVLVEDVVMMGRYGHMGW----------L-------------------------RRAKKRDRQIVTAALARV 130 (272)
T ss_pred ccccccCCCcchhhheeccccccccc----------c-------------------------cCCCHHHHHHHHHHHHHc
Confidence 97642 2346777764211000000 0 000011233456677888
Q ss_pred CCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhc
Q 006442 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLC 323 (645)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~ 323 (645)
|+. +..++++.+||||||||++|||||+.+|++|||||||+|||+.+++++.++|+ +.|+|||++|||++++..+|
T Consensus 131 gl~-~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~ 209 (272)
T PRK15056 131 DMV-EFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFC 209 (272)
T ss_pred CCh-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 886 56788999999999999999999999999999999999999999999998874 35899999999999999999
Q ss_pred CeEEEEcCceeEEeccChHH
Q 006442 324 TKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 324 d~i~~l~~G~~~~~~g~~~~ 343 (645)
|+++++ +|++. ..|..++
T Consensus 210 d~v~~~-~G~i~-~~g~~~~ 227 (272)
T PRK15056 210 DYTVMV-KGTVL-ASGPTET 227 (272)
T ss_pred CEEEEE-CCEEE-eecCHHh
Confidence 999887 78873 4455443
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=311.06 Aligned_cols=160 Identities=36% Similarity=0.580 Sum_probs=145.7
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC---------ceEEEEec
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~---------~~i~~v~Q 168 (645)
++++|++++|++.++|+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..++|++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (173)
T cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPE 80 (173)
T ss_pred CEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEec
Confidence 468999999988889999999999999999999999999999999999999999999987642 35999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCC
Q 006442 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (645)
Q Consensus 169 ~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (645)
++.+++..|+.||+
T Consensus 81 ~~~~~~~~tv~~~~------------------------------------------------------------------ 94 (173)
T cd03230 81 EPSLYENLTVRENL------------------------------------------------------------------ 94 (173)
T ss_pred CCccccCCcHHHHh------------------------------------------------------------------
Confidence 98876767877663
Q ss_pred CcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcCe
Q 006442 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTK 325 (645)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~~d~ 325 (645)
. |||||+||++|||||+.+|++|||||||++||+.+++++.++|++ .|.|+|++|||.+++..+||+
T Consensus 95 --~--------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~ 164 (173)
T cd03230 95 --K--------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDR 164 (173)
T ss_pred --h--------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCE
Confidence 0 899999999999999999999999999999999999999988743 478999999999999999999
Q ss_pred EEEEcCce
Q 006442 326 IVETEMGV 333 (645)
Q Consensus 326 i~~l~~G~ 333 (645)
++++++|+
T Consensus 165 i~~l~~g~ 172 (173)
T cd03230 165 VAILNNGR 172 (173)
T ss_pred EEEEeCCC
Confidence 99999885
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=327.83 Aligned_cols=200 Identities=28% Similarity=0.446 Sum_probs=168.9
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCC
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~ 502 (645)
++|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ...+|++|+.. +.
T Consensus 3 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~-~~i~~v~q~~~--~~ 79 (251)
T PRK09544 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK-LRIGYVPQKLY--LD 79 (251)
T ss_pred cEEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc-cCEEEeccccc--cc
Confidence 3799999999999888999999999999999999999999999999999999999999999874 24567776532 22
Q ss_pred C--CCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHH
Q 006442 503 L--DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 580 (645)
Q Consensus 503 ~--~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~ 580 (645)
. ..++.+++.... .....++..+++.+++. +..++++..|||||||||+|||||+.+|++|||||||++||+.++.
T Consensus 80 ~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 157 (251)
T PRK09544 80 TTLPLTVNRFLRLRP-GTKKEDILPALKRVQAG-HLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQV 157 (251)
T ss_pred cccChhHHHHHhccc-cccHHHHHHHHHHcCCh-HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHH
Confidence 2 246777764321 22345678899999994 6778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 581 MLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 581 ~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
.+.+.|.++ +.|||+||||++++.++||++++|++ +++. .|+.+++.
T Consensus 158 ~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~-~g~~~~~~ 208 (251)
T PRK09544 158 ALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICC-SGTPEVVS 208 (251)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEe-eCCHHHHh
Confidence 999998754 56999999999999999999999965 6654 46665553
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=331.16 Aligned_cols=206 Identities=27% Similarity=0.413 Sum_probs=172.9
Q ss_pred CCCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCeeEEEECceecc-----
Q 006442 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL----- 489 (645)
Q Consensus 420 ~~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~~~----- 489 (645)
.++++|+++|++++|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 35 ~~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 35 SGETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred CCCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 46778999999999988889999999999999999999999999999999999997 68999999997652
Q ss_pred -------cchhccchhhcCCCCCCHHHHHHhhhcc-----ccHHHHHHHHhhcCCC---hhhhccCcCcCCHhHHHHHHH
Q 006442 490 -------PNYFEQNQAEALDLDKTVLETVAEAAED-----WRIDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAF 554 (645)
Q Consensus 490 -------~~~~~q~~~~~l~~~~tv~e~v~~~~~~-----~~~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqkqrv~l 554 (645)
.+|++|+. .++. .|+.+|+...... ....++..+++.+++. .+..++++.+|||||||||+|
T Consensus 115 ~~~~~~~i~~v~q~~--~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~L 191 (285)
T PRK14254 115 PVALRRRIGMVFQKP--NPFP-KSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCI 191 (285)
T ss_pred hHhhhccEEEEecCC--ccCc-CCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHH
Confidence 13445442 3434 4999999764321 1134577888898874 245688999999999999999
Q ss_pred HHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEE-EEeCCeEEeeCCChhHHH
Q 006442 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVV-EVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~-~l~~g~i~~~~~~~~~~~ 629 (645)
||||+.+|+||||||||++||+.+++.+.++|+++ +.|||+||||++++..+|||++ +|++|+++.. ++.+++.
T Consensus 192 AraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~-g~~~~~~ 268 (285)
T PRK14254 192 ARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEF-DDTDKIF 268 (285)
T ss_pred HHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEe-CCHHHHH
Confidence 99999999999999999999999999999999876 3599999999999999999975 5799999864 6655543
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=328.35 Aligned_cols=207 Identities=25% Similarity=0.427 Sum_probs=161.9
Q ss_pred EEEEeEEEEeCC--eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceEEE
Q 006442 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (645)
Q Consensus 98 i~i~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i~~ 165 (645)
|+++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 478999999964 569999999999999999999999999999999999999999999998743 25999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchh
Q 006442 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (645)
Q Consensus 166 v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (645)
++|++.++ ..||.||+...... .. ...+....+ . ..+.+++..
T Consensus 81 ~~q~~~~~-~~tv~~nl~~~~~~-~~----~~~~~~~~~------------------------~-------~~~~~~l~~ 123 (237)
T cd03252 81 VLQENVLF-NRSIRDNIALADPG-MS----MERVIEAAK------------------------L-------AGAHDFISE 123 (237)
T ss_pred EcCCchhc-cchHHHHhhccCCC-CC----HHHHHHHHH------------------------H-------cCcHHHHHh
Confidence 99998774 57999998532110 00 000000000 0 011122333
Q ss_pred c--CCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 006442 246 L--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 246 l--gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~ 321 (645)
+ ++. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++ .|+|||++|||++++.
T Consensus 124 l~~~~~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~- 201 (237)
T cd03252 124 LPEGYD-TIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK- 201 (237)
T ss_pred Cccccc-chhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-
Confidence 3 343 345677899999999999999999999999999999999999999999888753 4889999999999996
Q ss_pred hcCeEEEEcCceeEEeccChHHH
Q 006442 322 LCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 322 ~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
.||+++++++|++. +.|+..++
T Consensus 202 ~~d~v~~l~~G~i~-~~~~~~~~ 223 (237)
T cd03252 202 NADRIIVMEKGRIV-EQGSHDEL 223 (237)
T ss_pred hCCEEEEEECCEEE-EEcCHHHH
Confidence 59999999999984 55665443
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=326.07 Aligned_cols=206 Identities=27% Similarity=0.435 Sum_probs=162.5
Q ss_pred EEEEeEEEEeCCe--eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceEEE
Q 006442 98 VKLENISKSYKGV--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (645)
Q Consensus 98 i~i~nls~~y~~~--~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i~~ 165 (645)
|+++|++++|++. ++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999765 79999999999999999999999999999999999999999999998642 24999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchh
Q 006442 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (645)
Q Consensus 166 v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (645)
++|++.++. .|++||+....... .. ..+....+ ...+.+++..
T Consensus 81 ~~q~~~~~~-~tv~enl~~~~~~~-~~----~~~~~~~~-------------------------------~~~~~~~~~~ 123 (234)
T cd03251 81 VSQDVFLFN-DTVAENIAYGRPGA-TR----EEVEEAAR-------------------------------AANAHEFIME 123 (234)
T ss_pred eCCCCeecc-ccHHHHhhccCCCC-CH----HHHHHHHH-------------------------------HcCcHHHHHh
Confidence 999988754 69999985321100 00 00000000 0011223333
Q ss_pred c--CCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 006442 246 L--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 246 l--gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~ 321 (645)
+ |+. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|||++||+++++..
T Consensus 124 l~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 202 (234)
T cd03251 124 LPEGYD-TVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN 202 (234)
T ss_pred cccCcc-eeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence 3 443 345677899999999999999999999999999999999999999999988753 48899999999999976
Q ss_pred hcCeEEEEcCceeEEeccChHH
Q 006442 322 LCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 322 ~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
||+++++++|++. ..|+..+
T Consensus 203 -~d~v~~l~~G~i~-~~~~~~~ 222 (234)
T cd03251 203 -ADRIVVLEDGKIV-ERGTHEE 222 (234)
T ss_pred -CCEEEEecCCeEe-eeCCHHH
Confidence 9999999999874 4565444
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=367.83 Aligned_cols=214 Identities=27% Similarity=0.439 Sum_probs=168.0
Q ss_pred CccEEEEeEEEEeCCe--eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ce
Q 006442 95 SSGVKLENISKSYKGV--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MK 162 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~--~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~ 162 (645)
...|+++|++|+|+.. ++|+|+||+|++||++||||+||||||||+|+|+|+++|++|+|.++|.+ ..
T Consensus 469 ~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ 548 (709)
T COG2274 469 QGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQ 548 (709)
T ss_pred CceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhh
Confidence 3459999999999765 59999999999999999999999999999999999999999999999864 36
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhh
Q 006442 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (645)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (645)
||||+|++.+ ++.||+|||.....+. . .+.+.+++..+. +.+.+.++
T Consensus 549 ig~V~Q~~~L-f~gSI~eNi~l~~p~~-~----~e~i~~A~~~ag---------------------------~~~fI~~l 595 (709)
T COG2274 549 VGYVLQDPFL-FSGSIRENIALGNPEA-T----DEEIIEAAQLAG---------------------------AHEFIENL 595 (709)
T ss_pred eeEEcccchh-hcCcHHHHHhcCCCCC-C----HHHHHHHHHHhC---------------------------cHHHHHhc
Confidence 9999999876 7889999996432210 0 011111111110 01111111
Q ss_pred chhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHH
Q 006442 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320 (645)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~ 320 (645)
-.|..+..++. ...||||||||++|||||+++|+|||||||||+||+++.+.+.+.|.+ .|+|+|+|||++..+.
T Consensus 596 --P~gy~t~v~E~-G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~ 672 (709)
T COG2274 596 --PMGYDTPVGEG-GANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR 672 (709)
T ss_pred --ccccccccccC-CCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh
Confidence 12444333333 689999999999999999999999999999999999999999998865 4699999999999997
Q ss_pred hhcCeEEEEcCceeEEeccChHHHHH
Q 006442 321 QLCTKIVETEMGVSRTYEGNYSQYVL 346 (645)
Q Consensus 321 ~~~d~i~~l~~G~~~~~~g~~~~~~~ 346 (645)
. ||+|++|++|++ ...|+.++...
T Consensus 673 ~-adrIiVl~~Gki-v~~gs~~ell~ 696 (709)
T COG2274 673 S-ADRIIVLDQGKI-VEQGSHEELLA 696 (709)
T ss_pred h-ccEEEEccCCce-eccCCHHHHHH
Confidence 5 999999999998 45677555443
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=327.44 Aligned_cols=206 Identities=27% Similarity=0.376 Sum_probs=172.2
Q ss_pred CCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC--C---CeeEEEECceecc------
Q 006442 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK--P---RGGEVLLGEHNVL------ 489 (645)
Q Consensus 421 ~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~--p---~~G~i~~~g~~~~------ 489 (645)
..++|+++|+++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++.
T Consensus 9 ~~~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 9 KQEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred CCceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 3457999999999998889999999999999999999999999999999999987 3 5899999998752
Q ss_pred ------cchhccchhhcCCCCCCHHHHHHhhhcc---cc----HHHHHHHHhhcCCCh---hhhccCcCcCCHhHHHHHH
Q 006442 490 ------PNYFEQNQAEALDLDKTVLETVAEAAED---WR----IDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLA 553 (645)
Q Consensus 490 ------~~~~~q~~~~~l~~~~tv~e~v~~~~~~---~~----~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~ 553 (645)
.+|++|+ ..+.. .|+.+|+...... .. ..++..+++.+++.. +..++++.+||||||||++
T Consensus 89 ~~~~~~i~~v~q~--~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~ 165 (259)
T PRK14274 89 VELRKNIGMVFQK--GNPFP-QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLC 165 (259)
T ss_pred HHHhhceEEEecC--Ccccc-cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHH
Confidence 1244443 23433 5999999754321 11 123566788888742 3467899999999999999
Q ss_pred HHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 554 FCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 554 lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|||||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++.++|||+++|++|++.. .|+.++++.
T Consensus 166 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~~ 243 (259)
T PRK14274 166 IARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVE-CNDTNKMFS 243 (259)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE-ECCHHHHhh
Confidence 999999999999999999999999999999999876 3699999999999999999999999999985 477776653
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=325.86 Aligned_cols=202 Identities=26% Similarity=0.366 Sum_probs=170.8
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC---CCeeEEEECceecc----------c
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK---PRGGEVLLGEHNVL----------P 490 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~---p~~G~i~~~g~~~~----------~ 490 (645)
+++++|+++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++. .
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i 81 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNV 81 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhE
Confidence 4889999999998889999999999999999999999999999999999984 68999999998763 2
Q ss_pred chhccchhhcCCCCCCHHHHHHhhhc--c------ccHHHHHHHHhhcCCCh---hhhccCcCcCCHhHHHHHHHHHHHc
Q 006442 491 NYFEQNQAEALDLDKTVLETVAEAAE--D------WRIDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFCKFMV 559 (645)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~v~~~~~--~------~~~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~lAral~ 559 (645)
+|++|. ..++ ..|+.+|+..... . ....++..+++.+++.. +..++.+.+|||||||||+|||||+
T Consensus 82 ~~~~q~--~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 158 (246)
T PRK14269 82 GMVFQQ--PNVF-VKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALA 158 (246)
T ss_pred EEEecC--Cccc-cccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 345554 2343 4699999975421 1 11234678899999852 3467889999999999999999999
Q ss_pred cCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 560 ~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++.++||++++|++|+++.. |..+++.
T Consensus 159 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~-g~~~~~~ 229 (246)
T PRK14269 159 IKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEF-GESKEFF 229 (246)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEE-CCHHHHH
Confidence 999999999999999999999999999865 56999999999999999999999999999864 5555544
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-39 Score=319.06 Aligned_cols=192 Identities=27% Similarity=0.445 Sum_probs=165.9
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cchhccc
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQN 496 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~q~ 496 (645)
++++|++++|+. .+.++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|+
T Consensus 1 ~~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (213)
T TIGR01277 1 LALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQE 78 (213)
T ss_pred CeEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEecc
Confidence 468999999974 578999999999999999999999999999999999999999999998752 2345554
Q ss_pred hhhcCCCCCCHHHHHHhhhcc------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCC
Q 006442 497 QAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (645)
Q Consensus 497 ~~~~l~~~~tv~e~v~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP 570 (645)
..+++..|+.+|+...... ....++.++++.+++. +..++.+.+||||||||++|||||+.+|++||||||
T Consensus 79 --~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 155 (213)
T TIGR01277 79 --NNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIA-DYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEP 155 (213)
T ss_pred --CccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcH-HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3466678999999754211 1234577899999994 677999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEee
Q 006442 571 TNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDY 621 (645)
Q Consensus 571 t~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~ 621 (645)
|++||+.++..+.++|.++ +.|||+||||++++.++||++++|++|++...
T Consensus 156 t~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~ 210 (213)
T TIGR01277 156 FSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVV 210 (213)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEe
Confidence 9999999999999998764 45999999999999999999999999999753
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=329.25 Aligned_cols=208 Identities=19% Similarity=0.262 Sum_probs=164.2
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEEcCCC---------
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN--------- 160 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p-----~~G~I~~~~~~--------- 160 (645)
.++|+++|++++|+++++|+++||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 18 ~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~ 97 (274)
T PRK14265 18 HSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97 (274)
T ss_pred CceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhH
Confidence 4479999999999988899999999999999999999999999999999999863 68999987632
Q ss_pred ---ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHH
Q 006442 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (645)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (645)
..|+|++|++.++. .|+.+|+....... . .. ...++
T Consensus 98 ~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~-~-----------~~----------------------------~~~~~ 136 (274)
T PRK14265 98 KLRRQVGMVFQRPNPFP-KSIYENIAFAPRAN-G-----------YK----------------------------GNLDE 136 (274)
T ss_pred HHhhcEEEEccCCcccc-ccHHHHHHhHHHhc-C-----------ch----------------------------HHHHH
Confidence 25999999987765 59999985321000 0 00 00011
Q ss_pred HHHhhchhcCCC---cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 006442 238 KVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (645)
Q Consensus 238 ~i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIiv 312 (645)
.+.++++.+++. .+..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|++ .+.|||++
T Consensus 137 ~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~ 216 (274)
T PRK14265 137 LVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMV 216 (274)
T ss_pred HHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 122233333331 1345677899999999999999999999999999999999999999999988753 36899999
Q ss_pred ecCHHHHHhhcCeEEEEc---------CceeEEeccChHHH
Q 006442 313 SHDRAFLDQLCTKIVETE---------MGVSRTYEGNYSQY 344 (645)
Q Consensus 313 sHd~~~l~~~~d~i~~l~---------~G~~~~~~g~~~~~ 344 (645)
|||++++..+||++++|+ +|++. ..|...+.
T Consensus 217 sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~-~~g~~~~~ 256 (274)
T PRK14265 217 THNMQQASRVADWTAFFNTEIDEYGKRRGKLV-EFSPTEQM 256 (274)
T ss_pred eCCHHHHHHhCCEEEEEecccccccccCceEE-EeCCHHHH
Confidence 999999999999999997 68773 45655443
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=320.28 Aligned_cols=189 Identities=31% Similarity=0.419 Sum_probs=162.9
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------------c
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------------P 490 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------------~ 490 (645)
+.+ ||+++|+++.+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 2 ~~~-~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 77 (214)
T cd03297 2 LCV-DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKI 77 (214)
T ss_pred cee-eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcE
Confidence 345 89999998766 99999999 999999999999999999999999999999999997642 1
Q ss_pred chhccchhhcCCCCCCHHHHHHhhhcc----ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEE
Q 006442 491 NYFEQNQAEALDLDKTVLETVAEAAED----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (645)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~v~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 566 (645)
+|++|+ ..+++..|+.+|+...... ....++.++++.+++. +..++++.+||||||||++|||||+.+|++||
T Consensus 78 ~~~~q~--~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 154 (214)
T cd03297 78 GLVFQQ--YALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLD-HLLNRYPAQLSGGEKQRVALARALAAQPELLL 154 (214)
T ss_pred EEEecC--CccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCH-hHhhcCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 244443 3455678999998764321 1234577899999995 66789999999999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEe
Q 006442 567 LDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (645)
Q Consensus 567 LDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~ 620 (645)
|||||++||+.+++.+.+.|.++ +.|||++|||++++..+||++++|++|++..
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (214)
T cd03297 155 LDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQY 212 (214)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999999999999998754 4699999999999999999999999999874
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=329.06 Aligned_cols=206 Identities=23% Similarity=0.331 Sum_probs=170.7
Q ss_pred CCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCeeEEEECceecc------
Q 006442 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL------ 489 (645)
Q Consensus 421 ~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~~~------ 489 (645)
+..+|+++|++++|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 10 ~~~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 10 KNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred CCceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 4567999999999998889999999999999999999999999999999999987 68999999997652
Q ss_pred ------cchhccchhhcCCCCCCHHHHHHhhhccc-----cHHHHHHHHhhcCCC---hhhhccCcCcCCHhHHHHHHHH
Q 006442 490 ------PNYFEQNQAEALDLDKTVLETVAEAAEDW-----RIDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAFC 555 (645)
Q Consensus 490 ------~~~~~q~~~~~l~~~~tv~e~v~~~~~~~-----~~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqkqrv~lA 555 (645)
.+|++|+. .+.. .|+.+|+....... ..+.+..+++.+++. .+..++++.+|||||||||+||
T Consensus 90 ~~~~~~i~~v~q~~--~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~la 166 (269)
T PRK14259 90 VEVRRRIGMVFQQP--NPFP-KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIA 166 (269)
T ss_pred HHHhhceEEEccCC--ccch-hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHH
Confidence 23445442 3433 59999997643211 123456678887763 2456888999999999999999
Q ss_pred HHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeC-----------CeEEeeC
Q 006442 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKG-----------SNLQDYA 622 (645)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~-----------g~i~~~~ 622 (645)
|||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++.++|||+++|++ |++++ .
T Consensus 167 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~-~ 245 (269)
T PRK14259 167 RTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVE-F 245 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEE-e
Confidence 9999999999999999999999999999999876 35999999999999999999999996 55665 4
Q ss_pred CChhHHHH
Q 006442 623 GDYNQVQS 630 (645)
Q Consensus 623 ~~~~~~~~ 630 (645)
|+.+++++
T Consensus 246 ~~~~~~~~ 253 (269)
T PRK14259 246 NETKKIFN 253 (269)
T ss_pred CCHHHHHh
Confidence 66666543
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=332.95 Aligned_cols=204 Identities=25% Similarity=0.389 Sum_probs=172.4
Q ss_pred cEEEEEeeeeeeCC------eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-------
Q 006442 423 SVVTIKNLEFGYED------RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------- 489 (645)
Q Consensus 423 ~~i~~~~v~~~y~~------~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------- 489 (645)
++|+++|++++|++ +++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 47999999999963 46999999999999999999999999999999999999999999999998752
Q ss_pred ----cchhccchhhcCCCCCCHHHHHHhhhcc--c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHc
Q 006442 490 ----PNYFEQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV 559 (645)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~v~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~ 559 (645)
.+|++|+....+ +..++.+|+.+.... . ....+..+++.+|+. +..++++.+|||||||||+|||||+
T Consensus 83 ~~~~i~~v~q~~~~~~-~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrv~laral~ 160 (280)
T PRK13633 83 IRNKAGMVFQNPDNQI-VATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMY-EYRRHAPHLLSGGQKQRVAIAGILA 160 (280)
T ss_pred HhhheEEEecChhhhh-ccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHH
Confidence 134455432223 346899998765321 1 124577889999994 6789999999999999999999999
Q ss_pred cCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 560 ~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++.. |||+++|++|++.. .|+.+++..
T Consensus 161 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~-~g~~~~~~~ 233 (280)
T PRK13633 161 MRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVM-EGTPKEIFK 233 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEE-ecCHHHHhc
Confidence 999999999999999999999999999864 4599999999999986 99999999999985 467666543
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=325.47 Aligned_cols=204 Identities=24% Similarity=0.365 Sum_probs=171.5
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC--C---CeeEEEECceecc--------
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK--P---RGGEVLLGEHNVL-------- 489 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~--p---~~G~i~~~g~~~~-------- 489 (645)
..|+++|++++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++.
T Consensus 3 ~~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 82 (252)
T PRK14256 3 NKVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82 (252)
T ss_pred cEEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHH
Confidence 45899999999988889999999999999999999999999999999999986 4 6899999998752
Q ss_pred ----cchhccchhhcCCCCCCHHHHHHhhhcc---cc----HHHHHHHHhhcCCCh---hhhccCcCcCCHhHHHHHHHH
Q 006442 490 ----PNYFEQNQAEALDLDKTVLETVAEAAED---WR----IDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFC 555 (645)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~v~~~~~~---~~----~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~lA 555 (645)
.+|++|+ ..+.+..|+.+|+...... .. ...+.++++.+++.. +..++.+.+||||||||++||
T Consensus 83 ~~~~i~~~~q~--~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~la 160 (252)
T PRK14256 83 IRRRVGMVFQK--PNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIA 160 (252)
T ss_pred hhccEEEEecC--CCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHH
Confidence 1234443 3455668999999754211 11 234677888888742 345788999999999999999
Q ss_pred HHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
|||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++.++|||+++|++|++... +..+++.
T Consensus 161 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~~~ 235 (252)
T PRK14256 161 RTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVEC-GETKKIF 235 (252)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEe-CCHHHHH
Confidence 9999999999999999999999999999999876 45999999999999999999999999999864 6666554
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=327.13 Aligned_cols=204 Identities=21% Similarity=0.308 Sum_probs=171.3
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC----CeeEEEECceecc--------cc
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP----RGGEVLLGEHNVL--------PN 491 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p----~~G~i~~~g~~~~--------~~ 491 (645)
+|+++|++++| ++++|+++||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++. .+
T Consensus 4 ~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~ 82 (254)
T PRK10418 4 QIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIA 82 (254)
T ss_pred EEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEE
Confidence 58999999999 67899999999999999999999999999999999999999 9999999997752 23
Q ss_pred hhccchhhcCCCCCCHHHHHHhhh----ccccHHHHHHHHhhcCCChh--hhccCcCcCCHhHHHHHHHHHHHccCCCeE
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAA----EDWRIDDIKGLLGRCNFKAD--MLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~----~~~~~~~~~~~L~~~~l~~~--~~~~~~~~LSgGqkqrv~lAral~~~p~lL 565 (645)
|++|.....+.+..++.+++.... .....+.+.++++.+++... ..++.+.+|||||||||+|||||+.+|++|
T Consensus 83 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lL 162 (254)
T PRK10418 83 TIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFI 162 (254)
T ss_pred EEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEE
Confidence 555543222344568888765421 11223567889999999531 468899999999999999999999999999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 566 VLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 566 lLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
||||||++||+.++..+.+.|+++ +.|||+||||++.+.++|||+++|++|++.. .++.+++.
T Consensus 163 lLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~~ 229 (254)
T PRK10418 163 IADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVE-QGDVETLF 229 (254)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEE-ecCHHHHh
Confidence 999999999999999999988754 4699999999999999999999999999985 46666654
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=325.83 Aligned_cols=203 Identities=25% Similarity=0.337 Sum_probs=169.6
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC--C---CeeEEEECceecc--------
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK--P---RGGEVLLGEHNVL-------- 489 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~--p---~~G~i~~~g~~~~-------- 489 (645)
++|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+.+ | ++|+|.++|.++.
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14239 4 PILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD 83 (252)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence 47999999999998889999999999999999999999999999999999853 6 4899999998652
Q ss_pred ----cchhccchhhcCCCCCCHHHHHHhhhcc---c----cHHHHHHHHhhcCCCh---hhhccCcCcCCHhHHHHHHHH
Q 006442 490 ----PNYFEQNQAEALDLDKTVLETVAEAAED---W----RIDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFC 555 (645)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~v~~~~~~---~----~~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~lA 555 (645)
.+|++|+. .+. ..|+.+|+...... . ....+..+++.+++.. +..++.+.+|||||||||+||
T Consensus 84 ~~~~i~~v~q~~--~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 160 (252)
T PRK14239 84 LRKEIGMVFQQP--NPF-PMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIA 160 (252)
T ss_pred hhhcEEEEecCC--ccC-cCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHH
Confidence 23444442 343 47999999754211 1 1234566788888632 346889999999999999999
Q ss_pred HHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
|||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++.++|||+++|++|++.. .|..+++.
T Consensus 161 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 235 (252)
T PRK14239 161 RVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIE-YNDTKQMF 235 (252)
T ss_pred HHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999999999999999999875 3699999999999999999999999999985 46666554
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=323.22 Aligned_cols=194 Identities=27% Similarity=0.442 Sum_probs=165.1
Q ss_pred CcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------cc
Q 006442 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PN 491 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~ 491 (645)
+++|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 5 ~~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 5 SPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred CceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 45799999999998888999999999999999999999999999999999999999999999997652 23
Q ss_pred hhccchhhcCCCCCCHHHHHHhhhc----cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEe
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAAE----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~~----~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 567 (645)
|++|. ..+. ..|+.+|+..... ......+.++++.+++.....++++.+|||||||||+|||||+.+|++|||
T Consensus 85 ~~~q~--~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 161 (225)
T PRK10247 85 YCAQT--PTLF-GDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLL 161 (225)
T ss_pred EEecc--cccc-cccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 44444 2343 4699999875321 112345678999999954567899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEe--CCeEE
Q 006442 568 DEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVK--GSNLQ 619 (645)
Q Consensus 568 DEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~--~g~i~ 619 (645)
||||++||+.+++.+.++|.++ +.|||+||||++++. .||++++|+ .|++.
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~ 218 (225)
T PRK10247 162 DEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEMQ 218 (225)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchHh
Confidence 9999999999999999988864 469999999999996 699999996 45554
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=337.28 Aligned_cols=210 Identities=21% Similarity=0.315 Sum_probs=164.5
Q ss_pred CccEEEEeEEEEeC--CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEEcCCC-------
Q 006442 95 SSGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN------- 160 (645)
Q Consensus 95 ~~~i~i~nls~~y~--~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~-----p~~G~I~~~~~~------- 160 (645)
...|+++|++++|. ..++|+|+||+|++|+++||+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 78 ~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~ 157 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS 157 (329)
T ss_pred CceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 34699999999995 3469999999999999999999999999999999999986 579999987653
Q ss_pred -----ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcH
Q 006442 161 -----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (645)
Q Consensus 161 -----~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (645)
..++|+||+|+++ +.|+++|+.... ... .. .+.+ ..
T Consensus 158 ~~~lr~~i~~v~q~~~~~-~~ti~eNi~~~~--~~~-------------~~-~~~~----------------------~~ 198 (329)
T PRK14257 158 SLELRTRIGMVFQKPTPF-EMSIFDNVAYGP--RNN-------------GI-NDRK----------------------IL 198 (329)
T ss_pred hHhhhccEEEEecCCccC-CCcHHHHHHhHH--Hhc-------------CC-ChHH----------------------HH
Confidence 2599999999875 689999986321 000 00 0000 00
Q ss_pred HHHHHhhchhcCCC---cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEE
Q 006442 236 DAKVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMV 310 (645)
Q Consensus 236 ~~~i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvI 310 (645)
++.+.+.++.+++. ....++.+.+|||||||||+|||||+.+|+||||||||++||+.+..++.+.|++ .++|||
T Consensus 199 ~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii 278 (329)
T PRK14257 199 EKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSII 278 (329)
T ss_pred HHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEE
Confidence 11122233333331 1234567899999999999999999999999999999999999999999887753 368999
Q ss_pred EEecCHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 311 ivsHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
+|||+++++.++||+|++|++|++. ..|+..+.
T Consensus 279 ~iTH~l~~i~~~~Driivl~~G~i~-e~g~~~~l 311 (329)
T PRK14257 279 IVTHSMAQAQRISDETVFFYQGWIE-EAGETKTI 311 (329)
T ss_pred EEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999999984 44665543
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=325.69 Aligned_cols=203 Identities=25% Similarity=0.367 Sum_probs=170.2
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcC---CCC--CeeEEEECceecc--------
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL---EKP--RGGEVLLGEHNVL-------- 489 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~---~~p--~~G~i~~~g~~~~-------- 489 (645)
++|+++|+++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+ ++| ++|+|.++|.++.
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 579999999999988899999999999999999999999999999999997 454 5899999998752
Q ss_pred ----cchhccchhhcCCCCCCHHHHHHhhhcc-------ccHHHHHHHHhhcCCCh---hhhccCcCcCCHhHHHHHHHH
Q 006442 490 ----PNYFEQNQAEALDLDKTVLETVAEAAED-------WRIDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFC 555 (645)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~v~~~~~~-------~~~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~lA 555 (645)
.+|++|+ ..+. ..|+.+|+...... .....+..+++.+++.. +..++++.+||||||||++||
T Consensus 82 ~~~~i~~v~q~--~~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 158 (250)
T PRK14245 82 LRKNVGMVFQR--PNPF-PKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIA 158 (250)
T ss_pred HhhheEEEecC--CccC-cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHH
Confidence 1344443 2343 36999999764321 11234678888898842 346788999999999999999
Q ss_pred HHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
|||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++.++|||+++|++|+++. .|+.+++.
T Consensus 159 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~-~~~~~~~~ 233 (250)
T PRK14245 159 RAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE-YDDTKKIF 233 (250)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEE-ECCHHHHh
Confidence 9999999999999999999999999999999875 3599999999999999999999999999985 46766654
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=323.40 Aligned_cols=207 Identities=27% Similarity=0.405 Sum_probs=161.5
Q ss_pred EEEEeEEEEeCC-eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceEEEE
Q 006442 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (645)
Q Consensus 98 i~i~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i~~v 166 (645)
|+++|++++|++ +++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.. ..++|+
T Consensus 3 l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 82 (229)
T cd03254 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVV 82 (229)
T ss_pred EEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEe
Confidence 899999999975 469999999999999999999999999999999999999999999998632 259999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhc
Q 006442 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (645)
Q Consensus 167 ~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (645)
+|++.++. .|+.||+....... . ...+...++ . ..+.+.++.+
T Consensus 83 ~q~~~~~~-~tv~~~~~~~~~~~-~----~~~~~~~~~--------------~-----------------~~l~~~~~~~ 125 (229)
T cd03254 83 LQDTFLFS-GTIMENIRLGRPNA-T----DEEVIEAAK--------------E-----------------AGAHDFIMKL 125 (229)
T ss_pred cCCchhhh-hHHHHHHhccCCCC-C----HHHHHHHHH--------------H-----------------hChHHHHHhC
Confidence 99987755 49999985321100 0 000000000 0 0011222222
Q ss_pred --CCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhh
Q 006442 247 --GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQL 322 (645)
Q Consensus 247 --gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~ 322 (645)
|+. ...++.+.+|||||||||+|||||+.+|++|||||||+|||+.+++++.+.|++ .+.|||++||+++++..
T Consensus 126 ~~~~~-~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~- 203 (229)
T cd03254 126 PNGYD-TVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN- 203 (229)
T ss_pred ccccc-CHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-
Confidence 333 235667899999999999999999999999999999999999999999887743 47899999999999975
Q ss_pred cCeEEEEcCceeEEeccChHHH
Q 006442 323 CTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 323 ~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
||+++++++|++. +.|+++++
T Consensus 204 ~d~i~~l~~g~~~-~~~~~~~~ 224 (229)
T cd03254 204 ADKILVLDDGKII-EEGTHDEL 224 (229)
T ss_pred CCEEEEEeCCeEE-EeCCHHHH
Confidence 9999999999984 45665443
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=329.77 Aligned_cols=202 Identities=26% Similarity=0.371 Sum_probs=171.8
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC--------eeEEEECceecc------
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR--------GGEVLLGEHNVL------ 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~--------~G~i~~~g~~~~------ 489 (645)
+|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.
T Consensus 1 ml~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred CeEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 488999999999889999999999999999999999999999999999999998 999999997652
Q ss_pred ----cchhccchhhcCCCCCCHHHHHHhhhcc-------c---cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHH
Q 006442 490 ----PNYFEQNQAEALDLDKTVLETVAEAAED-------W---RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFC 555 (645)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~v~~~~~~-------~---~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lA 555 (645)
.+|++|+. ...+..|+.+|+...... . ..+.+..+++.+++. +..++++.+|||||||||+||
T Consensus 81 ~~~~~~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la 157 (272)
T PRK13547 81 LARLRAVLPQAA--QPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGAT-ALVGRDVTTLSGGELARVQFA 157 (272)
T ss_pred HHhhcEEecccC--CCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHH
Confidence 13444432 334568999999764210 1 123467889999994 567899999999999999999
Q ss_pred HHHc---------cCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeC
Q 006442 556 KFMV---------KPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYA 622 (645)
Q Consensus 556 ral~---------~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~ 622 (645)
|||+ .+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++.++||++++|++|+++. .
T Consensus 158 ral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~-~ 236 (272)
T PRK13547 158 RVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVA-H 236 (272)
T ss_pred HHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEE-e
Confidence 9999 599999999999999999999999999754 4699999999999999999999999999985 4
Q ss_pred CChhHHH
Q 006442 623 GDYNQVQ 629 (645)
Q Consensus 623 ~~~~~~~ 629 (645)
++.++..
T Consensus 237 g~~~~~~ 243 (272)
T PRK13547 237 GAPADVL 243 (272)
T ss_pred cCHHHHc
Confidence 6666553
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=323.32 Aligned_cols=191 Identities=25% Similarity=0.328 Sum_probs=165.4
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCCCC
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLD 504 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~ 504 (645)
+.+++++++|+++++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. . + ....+.+.
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~--~-~-~~~~~~~~ 98 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL--L-G-LGGGFNPE 98 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh--h-c-ccccCCCC
Confidence 789999999999999999999999999999999999999999999999999999999999976421 1 1 11234567
Q ss_pred CCHHHHHHhhhccc--c----HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHH
Q 006442 505 KTVLETVAEAAEDW--R----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 578 (645)
Q Consensus 505 ~tv~e~v~~~~~~~--~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s 578 (645)
.|+.+|+....... . .+.+..+++.+++. +..++++.+||||||||++|||||+.+|++|||||||++||+.+
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~ 177 (224)
T cd03220 99 LTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELG-DFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAF 177 (224)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 89999987643211 1 23466788888984 66789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEe
Q 006442 579 KEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (645)
Q Consensus 579 ~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~ 620 (645)
+..+.++|.++ +.|||+||||++++..+||++++|++|++..
T Consensus 178 ~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 222 (224)
T cd03220 178 QEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRF 222 (224)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999998764 4699999999999999999999999999874
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=323.51 Aligned_cols=196 Identities=30% Similarity=0.390 Sum_probs=161.9
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCCCCC
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~T 177 (645)
+.++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. +.+..+...+.+..|
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~--~~~~~~~~~~~~~~t 100 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRV--SSLLGLGGGFNPELT 100 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE--chhhcccccCCCCCc
Confidence 789999999999999999999999999999999999999999999999999999999998653 222233345556789
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccC
Q 006442 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (645)
Q Consensus 178 v~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~ 257 (645)
|.||+...... . .......++++.++++.+|+. +..++++
T Consensus 101 v~enl~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l~-~~~~~~~ 140 (224)
T cd03220 101 GRENIYLNGRL---------------L------------------------GLSRKEIDEKIDEIIEFSELG-DFIDLPV 140 (224)
T ss_pred HHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHHHHcCCh-hhhhCCh
Confidence 99998522100 0 000111223455677778885 5678889
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCeEEEEcCcee
Q 006442 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (645)
Q Consensus 258 ~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d~i~~l~~G~~ 334 (645)
.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|+ +.+.|||++||+++++..+||+++++++|++
T Consensus 141 ~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 220 (224)
T cd03220 141 KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKI 220 (224)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999888764 3478999999999999999999999999987
Q ss_pred E
Q 006442 335 R 335 (645)
Q Consensus 335 ~ 335 (645)
.
T Consensus 221 ~ 221 (224)
T cd03220 221 R 221 (224)
T ss_pred E
Confidence 3
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=317.91 Aligned_cols=187 Identities=27% Similarity=0.428 Sum_probs=163.1
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc---------chhc
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP---------NYFE 494 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~---------~~~~ 494 (645)
+|+++|+++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. +|+.
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeC
Confidence 4789999999998889999999999999999999999999999999999999999999999987531 2333
Q ss_pred cchhhcCCCCCCHHHHHHhhhcc---ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCC
Q 006442 495 QNQAEALDLDKTVLETVAEAAED---WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571 (645)
Q Consensus 495 q~~~~~l~~~~tv~e~v~~~~~~---~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt 571 (645)
+ ...+.+..|+.+|+...... .....+.++++.+|+. +..++++.+||||||||++||||++++|++|||||||
T Consensus 81 ~--~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 157 (204)
T PRK13538 81 H--QPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLA-GFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPF 157 (204)
T ss_pred C--ccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCH-HHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 3 23455678999999765422 2345678899999994 5678999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEE
Q 006442 572 NHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEV 613 (645)
Q Consensus 572 ~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l 613 (645)
++||+.+++.+.++|+++ +.|||+||||++++..+.+|++++
T Consensus 158 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 158 TAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999865 569999999999999988888877
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=311.61 Aligned_cols=162 Identities=39% Similarity=0.572 Sum_probs=146.0
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC------------ceEEE
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------MKIAF 165 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~------------~~i~~ 165 (645)
|+++|++++|+++++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.+ ..++|
T Consensus 1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (178)
T cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGM 80 (178)
T ss_pred CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEE
Confidence 478999999988889999999999999999999999999999999999999999999987632 25999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchh
Q 006442 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (645)
Q Consensus 166 v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (645)
++|++.+++..|+.||+.
T Consensus 81 ~~q~~~~~~~~t~~~~l~-------------------------------------------------------------- 98 (178)
T cd03229 81 VFQDFALFPHLTVLENIA-------------------------------------------------------------- 98 (178)
T ss_pred EecCCccCCCCCHHHhee--------------------------------------------------------------
Confidence 999988777778877742
Q ss_pred cCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---C-CCeEEEEecCHHHHHh
Q 006442 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---Q-DVPMVIISHDRAFLDQ 321 (645)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~-g~tvIivsHd~~~l~~ 321 (645)
. .||||||||++|||||+.+|++|||||||+|||+.++.++.++|++ . +.|+|++||+++++..
T Consensus 99 ------~------~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 166 (178)
T cd03229 99 ------L------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAAR 166 (178)
T ss_pred ------e------cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 0 0999999999999999999999999999999999999999987743 3 7899999999999999
Q ss_pred hcCeEEEEcCce
Q 006442 322 LCTKIVETEMGV 333 (645)
Q Consensus 322 ~~d~i~~l~~G~ 333 (645)
+||+++++++|+
T Consensus 167 ~~d~i~~l~~g~ 178 (178)
T cd03229 167 LADRVVVLRDGK 178 (178)
T ss_pred hcCEEEEEeCCC
Confidence 999999998873
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=306.98 Aligned_cols=162 Identities=25% Similarity=0.441 Sum_probs=146.3
Q ss_pred EEEEeEEEEeCC-eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCCCC
Q 006442 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR 176 (645)
Q Consensus 98 i~i~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~ 176 (645)
|+++|++++|++ +++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++. ..++|++|++.+ +..
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-~~i~~~~q~~~~-~~~ 78 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-EDLLFLPQRPYL-PLG 78 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-ceEEEECCCCcc-ccc
Confidence 478999999964 57999999999999999999999999999999999999999999999853 579999999875 467
Q ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCccccccc
Q 006442 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (645)
Q Consensus 177 Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~ 256 (645)
|+.||+.. . .
T Consensus 79 tv~~nl~~------------------------------------------------------------------~----~ 88 (166)
T cd03223 79 TLREQLIY------------------------------------------------------------------P----W 88 (166)
T ss_pred cHHHHhhc------------------------------------------------------------------c----C
Confidence 99888630 0 2
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcCc
Q 006442 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMG 332 (645)
Q Consensus 257 ~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~i~~l~~G 332 (645)
+.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++.+.|+|++|||.++. .+||++++++++
T Consensus 89 ~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~-~~~d~i~~l~~~ 163 (166)
T cd03223 89 DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLW-KFHDRVLDLDGE 163 (166)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHH-hhCCEEEEEcCC
Confidence 578999999999999999999999999999999999999999999988789999999999876 589999999876
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=326.64 Aligned_cols=209 Identities=22% Similarity=0.334 Sum_probs=165.3
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEEcCCC---------
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN--------- 160 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p-----~~G~I~~~~~~--------- 160 (645)
...|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 14 ~~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~ 93 (265)
T PRK14252 14 QQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVD 93 (265)
T ss_pred CceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccC
Confidence 4469999999999988899999999999999999999999999999999999875 79999986532
Q ss_pred -----ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcH
Q 006442 161 -----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (645)
Q Consensus 161 -----~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (645)
..++|++|++.++.. |+.||+...+... .. .. ....
T Consensus 94 ~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~-~~---------------~~----------------------~~~~ 134 (265)
T PRK14252 94 PIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR-GV---------------KR----------------------RSIL 134 (265)
T ss_pred HHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc-CC---------------Ch----------------------HHHH
Confidence 249999999887664 9999985322100 00 00 0001
Q ss_pred HHHHHhhchhcCCC---cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEE
Q 006442 236 DAKVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMV 310 (645)
Q Consensus 236 ~~~i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvI 310 (645)
++++.+++..+++. .+..++.+.+||||||||++|||||+.+|++|||||||+|||+.+++++.++|++ .+.|||
T Consensus 135 ~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tii 214 (265)
T PRK14252 135 EERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTIL 214 (265)
T ss_pred HHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEE
Confidence 12223333334432 1345677899999999999999999999999999999999999999999888753 368999
Q ss_pred EEecCHHHHHhhcCeEEEEcCceeEEeccChHH
Q 006442 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 311 ivsHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
+|||+++++..+||+++++++|++.. .|...+
T Consensus 215 ivth~~~~~~~~~d~i~~l~~G~i~~-~g~~~~ 246 (265)
T PRK14252 215 IVTHNMQQAARVSDYTAYMYMGELIE-FGATDT 246 (265)
T ss_pred EEecCHHHHHHhCCEEEEEECCEEEE-eCCHHH
Confidence 99999999999999999999999853 455443
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=326.07 Aligned_cols=200 Identities=24% Similarity=0.440 Sum_probs=160.3
Q ss_pred CccEEEEeEEEEeCC---eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------c
Q 006442 95 SSGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------M 161 (645)
Q Consensus 95 ~~~i~i~nls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~ 161 (645)
.++|+++|++++|++ .++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. .
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 446999999999975 369999999999999999999999999999999999999999999998753 2
Q ss_pred eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHh
Q 006442 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (645)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (645)
.++|++|++.++ ..|+.+|+...+... .. ..+... .....+.+
T Consensus 89 ~i~~~~q~~~l~-~~tv~~nl~~~~~~~-~~----~~~~~~-------------------------------~~~~~~~~ 131 (226)
T cd03248 89 KVSLVGQEPVLF-ARSLQDNIAYGLQSC-SF----ECVKEA-------------------------------AQKAHAHS 131 (226)
T ss_pred hEEEEecccHHH-hhhHHHHhccccCCC-CH----HHHHHH-------------------------------HHHcCcHH
Confidence 599999998765 469999985322100 00 000000 00011234
Q ss_pred hchhc--CCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHH
Q 006442 242 LMPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRA 317 (645)
Q Consensus 242 ll~~l--gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~ 317 (645)
+++.+ |+. ...++.+.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .+.|||++||+++
T Consensus 132 ~l~~l~~gl~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~ 210 (226)
T cd03248 132 FISELASGYD-TEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLS 210 (226)
T ss_pred HHHhcccccc-chhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence 45555 564 346777999999999999999999999999999999999999999999988753 3689999999999
Q ss_pred HHHhhcCeEEEEcCce
Q 006442 318 FLDQLCTKIVETEMGV 333 (645)
Q Consensus 318 ~l~~~~d~i~~l~~G~ 333 (645)
++.. ||+|+++++|+
T Consensus 211 ~~~~-~d~i~~l~~g~ 225 (226)
T cd03248 211 TVER-ADQILVLDGGR 225 (226)
T ss_pred HHHh-CCEEEEecCCc
Confidence 9965 99999999885
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-39 Score=320.48 Aligned_cols=191 Identities=30% Similarity=0.494 Sum_probs=162.1
Q ss_pred EEEEeeeeeeCC--eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------cch
Q 006442 425 VTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNY 492 (645)
Q Consensus 425 i~~~~v~~~y~~--~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~ 492 (645)
|+++|+++.|++ +.+|+++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|.++. .+|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY 82 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 789999999975 57999999999999999999999999999999999999999999999997652 234
Q ss_pred hccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccC-----------cCcCCHhHHHHHHHHHHHccC
Q 006442 493 FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRK-----------VSLLSGGEKARLAFCKFMVKP 561 (645)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~-----------~~~LSgGqkqrv~lAral~~~ 561 (645)
++|+. .+. ..|+.+|+...........+..+++.+++. +..++. +.+||||||||++|||||+.+
T Consensus 83 ~~q~~--~~~-~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~ 158 (220)
T cd03245 83 VPQDV--TLF-YGTLRDNITLGAPLADDERILRAAELAGVT-DFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLND 158 (220)
T ss_pred eCCCC--ccc-cchHHHHhhcCCCCCCHHHHHHHHHHcCcH-HHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 45543 333 369999987643333344566778888884 445554 469999999999999999999
Q ss_pred CCeEEeeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhCCEEEEEeCCeEEe
Q 006442 562 STLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (645)
Q Consensus 562 p~lLlLDEPt~~LD~~s~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~ 620 (645)
|++|||||||++||+.++..+.+.|+++. .|||+||||++++ ++||++++|++|++..
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~ 218 (220)
T cd03245 159 PPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRIVA 218 (220)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCeEee
Confidence 99999999999999999999999998763 5999999999987 6899999999999874
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=324.80 Aligned_cols=208 Identities=19% Similarity=0.323 Sum_probs=167.2
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEEcCCC-----------
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN----------- 160 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~-----p~~G~I~~~~~~----------- 160 (645)
.|+++|+++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|+.+ |++|+|.++|.+
T Consensus 3 ~l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14266 3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL 82 (250)
T ss_pred EEEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHH
Confidence 4899999999998889999999999999999999999999999999999864 489999988743
Q ss_pred -ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHH
Q 006442 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (645)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (645)
..++|++|++.++. .|+.+|+...+... . ..+....++++
T Consensus 83 ~~~i~~~~q~~~~~~-~t~~~nl~~~~~~~--------------~------------------------~~~~~~~~~~~ 123 (250)
T PRK14266 83 RKKVGMVFQKPNPFP-KSIFDNVAYGLRIH--------------G------------------------EDDEDFIEERV 123 (250)
T ss_pred hhheEEEecCCccCc-chHHHHHHhHHhhc--------------C------------------------CCCHHHHHHHH
Confidence 24999999998765 59999985322100 0 00000112334
Q ss_pred HhhchhcCCCc---ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 006442 240 SKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (645)
Q Consensus 240 ~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsH 314 (645)
.++++.+|+.. ...++++.+||||||||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|||++||
T Consensus 124 ~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh 203 (250)
T PRK14266 124 EESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTH 203 (250)
T ss_pred HHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 44555555421 235777899999999999999999999999999999999999999999988753 4789999999
Q ss_pred CHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 315 d~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
+++++..+||+++++++|++. ..|+.+++
T Consensus 204 ~~~~~~~~~~~i~~l~~G~i~-~~g~~~~~ 232 (250)
T PRK14266 204 NMQQATRVSKYTSFFLNGEII-ESGLTDQI 232 (250)
T ss_pred CHHHHHhhcCEEEEEECCeEE-EeCCHHHH
Confidence 999999999999999999884 55665543
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=358.43 Aligned_cols=204 Identities=23% Similarity=0.344 Sum_probs=178.4
Q ss_pred CcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----------c
Q 006442 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------P 490 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~ 490 (645)
.++|+++|++++|+++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 9 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 9 PPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred CceEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 45799999999999888999999999999999999999999999999999999999999999997652 2
Q ss_pred chhccchhhcCCCCCCHHHHHHhhhccc--cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEee
Q 006442 491 NYFEQNQAEALDLDKTVLETVAEAAEDW--RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568 (645)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~v~~~~~~~--~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 568 (645)
+|++|+ ..+.+..|+.+|+....... ..+.+.++++.+++. +..++++.+|||||||||+|||||+.+|++||||
T Consensus 89 ~~v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLD 165 (510)
T PRK15439 89 YLVPQE--PLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQ-LDLDSSAGSLEVADRQIVEILRGLMRDSRILILD 165 (510)
T ss_pred EEEecc--CccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCC-ccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 355554 34667789999998653221 234577899999995 5678999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 569 EPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 569 EPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
|||++||+.++..+.+.|+++ +.|||+||||++++.++||++++|++|++.. .|+++++.
T Consensus 166 EPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 228 (510)
T PRK15439 166 EPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIAL-SGKTADLS 228 (510)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecChHHcC
Confidence 999999999999999998765 4699999999999999999999999999985 57777764
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=324.98 Aligned_cols=203 Identities=25% Similarity=0.375 Sum_probs=170.2
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCeeEEEECceecc--------
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL-------- 489 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~~~-------- 489 (645)
++|+++|++++|+++++|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 3 NIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 36999999999998889999999999999999999999999999999999997 47999999998652
Q ss_pred ----cchhccchhhcCCCCCCHHHHHHhhhcc---c----cHHHHHHHHhhcCCC---hhhhccCcCcCCHhHHHHHHHH
Q 006442 490 ----PNYFEQNQAEALDLDKTVLETVAEAAED---W----RIDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAFC 555 (645)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~v~~~~~~---~----~~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqkqrv~lA 555 (645)
.+|+.|+ ..+. ..|+.+|+...... . ....+..+++.+++. .+..++++.+||||||||++||
T Consensus 83 ~~~~i~~~~q~--~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la 159 (251)
T PRK14251 83 LRKEVGMVFQQ--PTPF-PFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIA 159 (251)
T ss_pred hhccEEEEecC--CccC-CCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHH
Confidence 1234443 2333 47999999754321 1 123466788888873 2345788999999999999999
Q ss_pred HHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
|||+.+|++|||||||++||+.+++.+.+.|+++ +.|||+||||++++.++|||+++|++|++... +..+++.
T Consensus 160 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~~~ 234 (251)
T PRK14251 160 RALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEA-GPTEEMF 234 (251)
T ss_pred HHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEe-CCHHHHH
Confidence 9999999999999999999999999999999876 46999999999999999999999999999864 5655543
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=335.91 Aligned_cols=209 Identities=27% Similarity=0.406 Sum_probs=174.7
Q ss_pred CCCCCcEEEEEeeeeeeC--CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCeeEEEECceecc-
Q 006442 418 GRSGRSVVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL- 489 (645)
Q Consensus 418 ~~~~~~~i~~~~v~~~y~--~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~~~- 489 (645)
.|+...+|+++|++++|. .+++|+|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.++|.++.
T Consensus 74 ~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 74 DFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 366778899999999995 3579999999999999999999999999999999999986 57999999998863
Q ss_pred -----------cchhccchhhcCCCCCCHHHHHHhhhcc--cc-H----HHHHHHHhhcCCCh---hhhccCcCcCCHhH
Q 006442 490 -----------PNYFEQNQAEALDLDKTVLETVAEAAED--WR-I----DDIKGLLGRCNFKA---DMLDRKVSLLSGGE 548 (645)
Q Consensus 490 -----------~~~~~q~~~~~l~~~~tv~e~v~~~~~~--~~-~----~~~~~~L~~~~l~~---~~~~~~~~~LSgGq 548 (645)
.+|++|.+ .+ +..|+++|+.+.... .. . ..+..+++.+++.. ...++++.+|||||
T Consensus 154 ~~~~~~~lr~~i~~v~q~~--~~-~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGq 230 (329)
T PRK14257 154 KKISSLELRTRIGMVFQKP--TP-FEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQ 230 (329)
T ss_pred cccchHhhhccEEEEecCC--cc-CCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHH
Confidence 13444442 23 468999999864321 11 1 12566788887632 34578899999999
Q ss_pred HHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChh
Q 006442 549 KARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626 (645)
Q Consensus 549 kqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~ 626 (645)
||||+|||||+.+|+||||||||++||+.+...+.+.|+++ +.|||+|||+++++.++||||++|++|++++ .|..+
T Consensus 231 kqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e-~g~~~ 309 (329)
T PRK14257 231 QQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEE-AGETK 309 (329)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHH
Confidence 99999999999999999999999999999999999999865 3699999999999999999999999999986 47777
Q ss_pred HHHH
Q 006442 627 QVQS 630 (645)
Q Consensus 627 ~~~~ 630 (645)
+++.
T Consensus 310 ~l~~ 313 (329)
T PRK14257 310 TIFI 313 (329)
T ss_pred HHhc
Confidence 7653
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=325.07 Aligned_cols=185 Identities=29% Similarity=0.408 Sum_probs=155.6
Q ss_pred eeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc-----eEEEEeccCccCCCCCHHHHHHHhhH
Q 006442 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----KIAFLSQEFEVSMSRTVREEFMSAFK 187 (645)
Q Consensus 113 L~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~-----~i~~v~Q~~~~~~~~Tv~eni~~~~~ 187 (645)
|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+. ..+|++|++.+++..|+.||+...+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999986432 36899999988778899999853211
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHH
Q 006442 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267 (645)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqR 267 (645)
.. .. ..+.....+++.++++.+|+. +..++++.+||||||||
T Consensus 81 ~~-------------~~------------------------~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qr 122 (230)
T TIGR01184 81 RV-------------LP------------------------DLSKSERRAIVEEHIALVGLT-EAADKRPGQLSGGMKQR 122 (230)
T ss_pred hc-------------cc------------------------CCCHHHHHHHHHHHHHHcCCH-HHHcCChhhCCHHHHHH
Confidence 00 00 001112234466778888986 56788899999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCeEEEEcCceeE
Q 006442 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335 (645)
Q Consensus 268 vaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d~i~~l~~G~~~ 335 (645)
++|||||+.+|++|||||||+|||+.+++++.+.|++ .|+|||++|||++++.++||+|+++++|++.
T Consensus 123 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~ 194 (230)
T TIGR01184 123 VAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAA 194 (230)
T ss_pred HHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEe
Confidence 9999999999999999999999999999999887743 4889999999999999999999999999874
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=329.14 Aligned_cols=204 Identities=27% Similarity=0.441 Sum_probs=172.0
Q ss_pred CcEEEEEeeeeeeC--CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------
Q 006442 422 RSVVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~--~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (645)
+++|+++|+++.|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 5 ~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred ceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 35799999999995 467999999999999999999999999999999999999999999999998753
Q ss_pred cchhccchhhcCCCCCCHHHHHHhhhcc--cc----HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCC
Q 006442 490 PNYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (645)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~v~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 563 (645)
.+|++|+.. ...+..|+.+|+...... .. ...+.++++.+++. +..++.+.+||||||||++|||||+.+|+
T Consensus 85 i~~v~q~~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~ 162 (271)
T PRK13632 85 IGIIFQNPD-NQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGME-DYLDKEPQNLSGGQKQRVAIASVLALNPE 162 (271)
T ss_pred eEEEEeCHH-HhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 134454422 234568999999764321 11 12467789999994 67899999999999999999999999999
Q ss_pred eEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 564 LLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 564 lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
+|||||||++||+.+++.+.++|+++ +.|||++|||++.+. .||++++|++|++.. .|+.+++.
T Consensus 163 lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~-~g~~~~~~ 230 (271)
T PRK13632 163 IIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIA-QGKPKEIL 230 (271)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEE-ecCHHHHh
Confidence 99999999999999999999999865 259999999999996 799999999999975 45655543
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=323.80 Aligned_cols=204 Identities=25% Similarity=0.362 Sum_probs=171.8
Q ss_pred CcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CeeEEEECceecc-------
Q 006442 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL------- 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p-----~~G~i~~~g~~~~------- 489 (645)
+++|+++|++++|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 2 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 2 KIKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred ccEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 4679999999999888899999999999999999999999999999999999875 7999999998752
Q ss_pred -----cchhccchhhcCCCCCCHHHHHHhhhccc---c----HHHHHHHHhhcCCC---hhhhccCcCcCCHhHHHHHHH
Q 006442 490 -----PNYFEQNQAEALDLDKTVLETVAEAAEDW---R----IDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAF 554 (645)
Q Consensus 490 -----~~~~~q~~~~~l~~~~tv~e~v~~~~~~~---~----~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqkqrv~l 554 (645)
.+|++|+. .+. ..|+.+|+.+..... . ..++..+++.+++. .+..++++.+||||||||++|
T Consensus 82 ~~~~~i~~~~q~~--~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 158 (251)
T PRK14270 82 ELRKRVGMVFQKP--NPF-PMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCI 158 (251)
T ss_pred HHHhheEEEecCC--CcC-CCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHH
Confidence 13444442 343 489999997543211 1 23456788888873 234678899999999999999
Q ss_pred HHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
|||++.+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++.++|||+++|++|++... ++.++..
T Consensus 159 aral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~-~~~~~~~ 234 (251)
T PRK14270 159 ARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEF-NKTEKIF 234 (251)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEe-CCHHHHh
Confidence 99999999999999999999999999999999876 46999999999999999999999999999864 6666554
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=307.81 Aligned_cols=205 Identities=29% Similarity=0.455 Sum_probs=177.1
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----------cc
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PN 491 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~~ 491 (645)
++++++|++..|+...+|++|||++++||+++|+|+||+||||||++|+|+.++.+|+|.++|.++. ..
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 4799999999999999999999999999999999999999999999999999999999999999873 13
Q ss_pred hhccchhhcCCCCCCHHHHHHhhhcccc-----HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEE
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAAEDWR-----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~~~~~-----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 566 (645)
|++|. ..+++.+||.||+..+..... ......+.+.|---.+..+++..+|||||||-++|||||+.+|++|+
T Consensus 82 ~VPeg--R~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLL 159 (237)
T COG0410 82 YVPEG--RRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLL 159 (237)
T ss_pred eCccc--ccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEE
Confidence 55654 457899999999987643211 11145566666433567789999999999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHhcC---c-eEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 567 LDEPTNHLDIPSKEMLEEAISEYK---G-TVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 567 LDEPt~~LD~~s~~~l~~~l~~~~---~-tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|||||.||-|.-.+.+.++|++.. + ||++|-++..++.+++||.++|++|+++ +.|+-+++.+
T Consensus 160 LDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv-~~G~~~eL~~ 226 (237)
T COG0410 160 LDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIV-LSGTAAELLA 226 (237)
T ss_pred ecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEE-EecCHHHHhc
Confidence 999999999999999999998653 3 9999999999999999999999999998 4688777654
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=358.65 Aligned_cols=207 Identities=31% Similarity=0.461 Sum_probs=172.4
Q ss_pred CccEEEEeEEEEeCC-----eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEc-CC---------
Q 006442 95 SSGVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA-KS--------- 159 (645)
Q Consensus 95 ~~~i~i~nls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~-~~--------- 159 (645)
.++|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++ +.
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~ 356 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG 356 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccc
Confidence 457999999999952 469999999999999999999999999999999999999999999984 31
Q ss_pred -------CceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCCh
Q 006442 160 -------NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (645)
Q Consensus 160 -------~~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (645)
..+|+|++|++.+++..||.+|+...+. +. .+.
T Consensus 357 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~---------------~~-------------------------~~~ 396 (520)
T TIGR03269 357 PDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIG---------------LE-------------------------LPD 396 (520)
T ss_pred hhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHH---------------cC-------------------------CCH
Confidence 1249999999888788899999853210 00 000
Q ss_pred hcHHHHHHhhchhcCCCc----ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----c
Q 006442 233 DTLDAKVSKLMPELGFTA----DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----K 304 (645)
Q Consensus 233 ~~~~~~i~~ll~~lgl~~----~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~ 304 (645)
...+.++.++++.+|+.. +..++++.+|||||||||+|||||+.+|+||||||||+|||+.+++.+.++|+ +
T Consensus 397 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~ 476 (520)
T TIGR03269 397 ELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREE 476 (520)
T ss_pred HHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH
Confidence 012245567788889863 25789999999999999999999999999999999999999999999998873 3
Q ss_pred CCCeEEEEecCHHHHHhhcCeEEEEcCceeEEeccChH
Q 006442 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYS 342 (645)
Q Consensus 305 ~g~tvIivsHd~~~l~~~~d~i~~l~~G~~~~~~g~~~ 342 (645)
.|.|||+||||++++.++||+++++++|++. ..|...
T Consensus 477 ~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~-~~g~~~ 513 (520)
T TIGR03269 477 MEQTFIIVSHDMDFVLDVCDRAALMRDGKIV-KIGDPE 513 (520)
T ss_pred cCcEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHH
Confidence 5899999999999999999999999999874 445543
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=323.45 Aligned_cols=202 Identities=27% Similarity=0.406 Sum_probs=169.2
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CeeEEEECceecc---------
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL--------- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p-----~~G~i~~~g~~~~--------- 489 (645)
.|+++|+++.|+++++++|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL 82 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHH
Confidence 58999999999888899999999999999999999999999999999999863 6899999997753
Q ss_pred ---cchhccchhhcCCCCCCHHHHHHhhhccc-------cHHHHHHHHhhcCCCh---hhhccCcCcCCHhHHHHHHHHH
Q 006442 490 ---PNYFEQNQAEALDLDKTVLETVAEAAEDW-------RIDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFCK 556 (645)
Q Consensus 490 ---~~~~~q~~~~~l~~~~tv~e~v~~~~~~~-------~~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~lAr 556 (645)
.+|++|+ ..+.. .|+.+|+......+ ..+.+.++++.+++.. +..++++.+||||||||++|||
T Consensus 83 ~~~i~~~~q~--~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 159 (250)
T PRK14240 83 RKRVGMVFQQ--PNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIAR 159 (250)
T ss_pred hccEEEEecC--CccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHH
Confidence 1344443 23434 89999997643211 1234667788887632 3467889999999999999999
Q ss_pred HHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 557 al~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++.+.++|||+++|++|+++.. +..+++.
T Consensus 160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~-~~~~~~~ 233 (250)
T PRK14240 160 ALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEF-GDTVDLF 233 (250)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEe-CCHHHHH
Confidence 999999999999999999999999999999876 35999999999999999999999999999864 6656554
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=329.69 Aligned_cols=202 Identities=20% Similarity=0.348 Sum_probs=166.8
Q ss_pred EEEEEeeeeeeC-CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-------cchhcc
Q 006442 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------PNYFEQ 495 (645)
Q Consensus 424 ~i~~~~v~~~y~-~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------~~~~~q 495 (645)
+|+++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q 85 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ 85 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecc
Confidence 599999999996 578999999999999999999999999999999999999999999999997652 345555
Q ss_pred chhhcCCCCCCHHHHHHhhhc----------cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeE
Q 006442 496 NQAEALDLDKTVLETVAEAAE----------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (645)
Q Consensus 496 ~~~~~l~~~~tv~e~v~~~~~----------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 565 (645)
+.........++.+++..... ......+..+++.+++. +..++++.+||||||||++|||||+.+|++|
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrv~laraL~~~p~ll 164 (272)
T PRK15056 86 SEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMV-EFRHRQIGELSGGQKKRVFLARAIAQQGQVI 164 (272)
T ss_pred ccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 432111223456777643210 01123467789999994 5678999999999999999999999999999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHH
Q 006442 566 VLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQV 628 (645)
Q Consensus 566 lLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~ 628 (645)
||||||++||+.+++.+.++|.++ +.|||+||||++++.++||+++++ +|++.. .|..+++
T Consensus 165 llDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~-~g~~~~~ 228 (272)
T PRK15056 165 LLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLA-SGPTETT 228 (272)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEe-ecCHHhc
Confidence 999999999999999999999865 459999999999999999999877 899875 4665554
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=321.48 Aligned_cols=202 Identities=28% Similarity=0.350 Sum_probs=165.5
Q ss_pred cEEEEeEEEEeCC----eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC---CCccEEEEcCCC-------ce
Q 006442 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE---PDSGNVIKAKSN-------MK 162 (645)
Q Consensus 97 ~i~i~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~---p~~G~I~~~~~~-------~~ 162 (645)
.+.++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+ ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 3679999999965 469999999999999999999999999999999999999 999999998743 35
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHh-
Q 006442 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK- 241 (645)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~- 241 (645)
++|++|++.+++..|+.||+....... .. .. ........++.+
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~-------------~~---~~--------------------~~~~~~~~~~~~~ 126 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILR-------------LP---RK--------------------SSDAIRKKRVEDV 126 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhh-------------cc---cc--------------------cchHHHHHHHHHH
Confidence 999999998878889999985321100 00 00 000001112333
Q ss_pred hchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCH-H
Q 006442 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDR-A 317 (645)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~-~ 317 (645)
+++.+++. +..++.+.+|||||+||++|||||+.+|++|||||||+|||+.++..+.++|+ +.+.|+|++||+. +
T Consensus 127 ~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~ 205 (226)
T cd03234 127 LLRDLALT-RIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRS 205 (226)
T ss_pred HHHhhcch-hhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCH
Confidence 67777775 56678899999999999999999999999999999999999999999988774 3588999999998 6
Q ss_pred HHHhhcCeEEEEcCceeE
Q 006442 318 FLDQLCTKIVETEMGVSR 335 (645)
Q Consensus 318 ~l~~~~d~i~~l~~G~~~ 335 (645)
.+.++||+++++++|++.
T Consensus 206 ~~~~~~d~i~~l~~G~i~ 223 (226)
T cd03234 206 DLFRLFDRILLLSSGEIV 223 (226)
T ss_pred HHHHhCCEEEEEeCCEEE
Confidence 899999999999999874
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=328.89 Aligned_cols=206 Identities=25% Similarity=0.355 Sum_probs=171.9
Q ss_pred CCCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCeeEEEECceecc-----
Q 006442 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL----- 489 (645)
Q Consensus 420 ~~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~~~----- 489 (645)
.++++|+++|++++|+++.+|+|+||+|.+||+++|+|+||||||||+++|+|+.+ |++|+|.++|.++.
T Consensus 35 ~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 35 GGKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred CCceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 36678999999999988889999999999999999999999999999999999864 49999999997642
Q ss_pred -------cchhccchhhcCCCCCCHHHHHHhhhcc---cc----HHHHHHHHhhcCCC---hhhhccCcCcCCHhHHHHH
Q 006442 490 -------PNYFEQNQAEALDLDKTVLETVAEAAED---WR----IDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARL 552 (645)
Q Consensus 490 -------~~~~~q~~~~~l~~~~tv~e~v~~~~~~---~~----~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqkqrv 552 (645)
.+|++|+. .+.. .|+.+|+...... .. .+.+..+++.+++. .+..++++..|||||||||
T Consensus 115 ~~~~~~~i~~v~q~~--~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv 191 (286)
T PRK14275 115 EVLLRKKIGMVFQKP--NPFP-KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRL 191 (286)
T ss_pred hHHhhhcEEEECCCC--CCCc-cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHH
Confidence 12444442 3433 5999999864321 11 23456778888763 2456888999999999999
Q ss_pred HHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 553 AFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 553 ~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
+|||||+.+|++|||||||++||+.++..+.+.|+++. .|||+||||++++.++|||+++|++|++.. .|..+++.
T Consensus 192 ~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~-~g~~~~~~ 269 (286)
T PRK14275 192 CVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVE-HAPTAQLF 269 (286)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 99999999999999999999999999999999998763 499999999999999999999999999985 46666554
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=328.98 Aligned_cols=205 Identities=30% Similarity=0.421 Sum_probs=173.3
Q ss_pred CcEEEEEeeeeeeCC--eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCe---eEEEECceecc-------
Q 006442 422 RSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG---GEVLLGEHNVL------- 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~--~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~---G~i~~~g~~~~------- 489 (645)
..+|+++|+++.|++ +++|+++||+|++||+++|+|+||||||||+++|+|+++|++ |+|.++|.++.
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 347999999999964 469999999999999999999999999999999999999987 89999998763
Q ss_pred ---cchhccchhhcCCCCCCHHHHHHhhhcc--cc----HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHcc
Q 006442 490 ---PNYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560 (645)
Q Consensus 490 ---~~~~~q~~~~~l~~~~tv~e~v~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~ 560 (645)
.+|++|+.. ...+..|+.+|+.+.... .. .+.+..+++.+++. +..++++.+||||||||++|||||+.
T Consensus 83 ~~~ig~v~q~~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LS~G~~qrv~laral~~ 160 (282)
T PRK13640 83 REKVGIVFQNPD-NQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGML-DYIDSEPANLSGGQKQRVAIAGILAV 160 (282)
T ss_pred HhheEEEEECHH-HhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCh-hHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 235555432 234578999999754321 11 23477889999995 67899999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 561 ~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++. +|||+++|++|++.. .|+.+++..
T Consensus 161 ~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~~~~ 232 (282)
T PRK13640 161 EPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLA-QGSPVEIFS 232 (282)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEE-eCCHHHHhc
Confidence 99999999999999999999999999764 469999999999995 799999999999985 466666543
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=320.11 Aligned_cols=201 Identities=30% Similarity=0.462 Sum_probs=172.4
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cchhccc
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQN 496 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~q~ 496 (645)
|+++|++++|++. +|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .+|++|+
T Consensus 1 l~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~ 79 (235)
T cd03299 1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQN 79 (235)
T ss_pred CeeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeec
Confidence 4689999999765 899999999999999999999999999999999999999999999998753 2344443
Q ss_pred hhhcCCCCCCHHHHHHhhhccc------cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCC
Q 006442 497 QAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (645)
Q Consensus 497 ~~~~l~~~~tv~e~v~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP 570 (645)
..+++..|+.+|+....... ..+.+.++++.+++. ...++.+.+|||||||||+||||++.+|++||||||
T Consensus 80 --~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 156 (235)
T cd03299 80 --YALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGID-HLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEP 156 (235)
T ss_pred --CccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCC
Confidence 34556789999997643211 123467889999994 678999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 571 TNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 571 t~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|++||+.++..+.+.|+++ +.|||++|||++++.++||++++|++|+++. .++++...+
T Consensus 157 t~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~~ 219 (235)
T cd03299 157 FSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQ-VGKPEEVFK 219 (235)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ecCHHHHHh
Confidence 9999999999999998764 5699999999999999999999999999985 466666544
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=325.62 Aligned_cols=206 Identities=23% Similarity=0.298 Sum_probs=172.8
Q ss_pred CCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCeeEEEECceecc------
Q 006442 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL------ 489 (645)
Q Consensus 421 ~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~~~------ 489 (645)
.+.+|+++|++++|+++++|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 17 ~~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 17 EEIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred CCeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 3457999999999998899999999999999999999999999999999999996 58999999998752
Q ss_pred ------cchhccchhhcCCCCCCHHHHHHhhhcc---c----cHHHHHHHHhhcCCCh---hhhccCcCcCCHhHHHHHH
Q 006442 490 ------PNYFEQNQAEALDLDKTVLETVAEAAED---W----RIDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLA 553 (645)
Q Consensus 490 ------~~~~~q~~~~~l~~~~tv~e~v~~~~~~---~----~~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~ 553 (645)
.+|++|. ..+.+ .|+.+|+...... . ....+.++++.+++.. +..++++.+||||||||++
T Consensus 97 ~~~~~~i~~v~q~--~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~ 173 (267)
T PRK14237 97 YEMRKHIGMVFQR--PNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLC 173 (267)
T ss_pred HHHhcceEEEecC--Ccccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHH
Confidence 1334443 23433 6999999764321 1 1234667788888742 3568899999999999999
Q ss_pred HHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 554 FCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 554 lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|||||+.+|++|||||||++||+.++..+.++|.+. +.|||+||||++++.++||++++|++|+++. .|+.+++..
T Consensus 174 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~~ 251 (267)
T PRK14237 174 IARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIE-YDKTRNIFT 251 (267)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEE-eCCHHHHhc
Confidence 999999999999999999999999999999999875 3599999999999999999999999999986 466666543
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=323.08 Aligned_cols=203 Identities=24% Similarity=0.394 Sum_probs=168.9
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC-----eeEEEECceecc---------
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-----GGEVLLGEHNVL--------- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~-----~G~i~~~g~~~~--------- 489 (645)
+|+++|+++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|.++.
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAM 83 (252)
T ss_pred EEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHh
Confidence 689999999999889999999999999999999999999999999999999874 899999997752
Q ss_pred ---cchhccchhhcCCCCCCHHHHHHhhhcc--c-cH----HHHHHHHhhcCCC---hhhhccCcCcCCHhHHHHHHHHH
Q 006442 490 ---PNYFEQNQAEALDLDKTVLETVAEAAED--W-RI----DDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAFCK 556 (645)
Q Consensus 490 ---~~~~~q~~~~~l~~~~tv~e~v~~~~~~--~-~~----~~~~~~L~~~~l~---~~~~~~~~~~LSgGqkqrv~lAr 556 (645)
.+|++|+ ..+.+..|+.+|+...... . .. +.+...+..+++. .+..++++.+||||||||++|||
T Consensus 84 ~~~i~~~~q~--~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 161 (252)
T PRK14272 84 RRRVGMVFQK--PNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIAR 161 (252)
T ss_pred hceeEEEecc--CccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHH
Confidence 1244443 3455668999999754321 1 11 2244455666542 23457889999999999999999
Q ss_pred HHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 557 al~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
||+.+|++|||||||++||+.++..+.+.|+++. .|||++|||++++.++|||+++|++|++.. .|..+++.
T Consensus 162 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 235 (252)
T PRK14272 162 ALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVE-HGPTDQLF 235 (252)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999999999999999998763 699999999999999999999999999985 46666654
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=316.82 Aligned_cols=189 Identities=21% Similarity=0.308 Sum_probs=160.9
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-------ceEEEEecc
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIAFLSQE 169 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-------~~i~~v~Q~ 169 (645)
+|+++|++++|++..+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..++|++|.
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHR 81 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCC
Confidence 4899999999988889999999999999999999999999999999999999999999998743 248999998
Q ss_pred CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCC
Q 006442 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (645)
Q Consensus 170 ~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (645)
+.+++..|+.+|+..... . .. .-++++.++++.+|+.
T Consensus 82 ~~~~~~~tv~~~l~~~~~---------------~--------------------------~~--~~~~~~~~~l~~~~l~ 118 (207)
T PRK13539 82 NAMKPALTVAENLEFWAA---------------F--------------------------LG--GEELDIAAALEAVGLA 118 (207)
T ss_pred CcCCCCCcHHHHHHHHHH---------------h--------------------------cC--CcHHHHHHHHHHcCCH
Confidence 877778899999742100 0 00 0012355677888886
Q ss_pred cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcCeE
Q 006442 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKI 326 (645)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~~d~i 326 (645)
+..++++.+||||||||++|||||+.+|++|||||||+|||+.+++++.++|++ .|+|||++||+.+++.. |++
T Consensus 119 -~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~ 195 (207)
T PRK13539 119 -PLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--ARE 195 (207)
T ss_pred -HHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcE
Confidence 466888999999999999999999999999999999999999999999888753 58999999999999987 888
Q ss_pred EEEcC
Q 006442 327 VETEM 331 (645)
Q Consensus 327 ~~l~~ 331 (645)
+.++.
T Consensus 196 ~~~~~ 200 (207)
T PRK13539 196 LDLGP 200 (207)
T ss_pred EeecC
Confidence 87743
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=315.65 Aligned_cols=185 Identities=21% Similarity=0.317 Sum_probs=157.4
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC---------ceEEEEe
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLS 167 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~---------~~i~~v~ 167 (645)
+|+++|++++|++.++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++
T Consensus 1 ml~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~ 80 (200)
T PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVG 80 (200)
T ss_pred CEEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEec
Confidence 3789999999998889999999999999999999999999999999999999999999998753 2599999
Q ss_pred ccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcC
Q 006442 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (645)
Q Consensus 168 Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg 247 (645)
|++.+++..||.+|+...... . ..+..+.++++.++
T Consensus 81 q~~~~~~~~tv~~~~~~~~~~------------------------------------------~--~~~~~~~~~l~~~~ 116 (200)
T PRK13540 81 HRSGINPYLTLRENCLYDIHF------------------------------------------S--PGAVGITELCRLFS 116 (200)
T ss_pred cccccCcCCCHHHHHHHHHhc------------------------------------------C--cchHHHHHHHHHcC
Confidence 998877789999997521100 0 00123456677777
Q ss_pred CCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcC
Q 006442 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCT 324 (645)
Q Consensus 248 l~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~~d 324 (645)
+. +..++++.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||++||+.+++.. ||
T Consensus 117 l~-~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~-~d 194 (200)
T PRK13540 117 LE-HLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK-AD 194 (200)
T ss_pred Cc-hhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc-cc
Confidence 75 456788899999999999999999999999999999999999999999988753 58999999999999976 66
Q ss_pred eEE
Q 006442 325 KIV 327 (645)
Q Consensus 325 ~i~ 327 (645)
.-+
T Consensus 195 ~~~ 197 (200)
T PRK13540 195 YEE 197 (200)
T ss_pred hhh
Confidence 543
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=320.84 Aligned_cols=202 Identities=27% Similarity=0.425 Sum_probs=173.9
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cchhccc
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQN 496 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~q~ 496 (645)
|+++|++++|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .+|.+|.
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~ 80 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQH 80 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecC
Confidence 47899999999889999999999999999999999999999999999999999999999998752 1344443
Q ss_pred hhhcCCCCCCHHHHHHhhhcc------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCC
Q 006442 497 QAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (645)
Q Consensus 497 ~~~~l~~~~tv~e~v~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP 570 (645)
..+++..|+.+|+...... .....+.++++.+++. +..++.+.+||+||+||++|||||+++|+++|||||
T Consensus 81 --~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP 157 (237)
T TIGR00968 81 --YALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLE-GLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEP 157 (237)
T ss_pred --hhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3455668999999764321 1124567889999994 678899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 571 TNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 571 t~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|++||+.+++.+.+.|.+. +.|||++||+++++.++||++++|++|++.. .++.+++.+
T Consensus 158 ~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~-~~~~~~~~~ 220 (237)
T TIGR00968 158 FGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQ-IGSPDEVYD 220 (237)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEE-ecCHHHHHc
Confidence 9999999999999999864 4699999999999999999999999999985 466666543
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=315.21 Aligned_cols=185 Identities=25% Similarity=0.364 Sum_probs=155.4
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC---------ceEEEEec
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~---------~~i~~v~Q 168 (645)
|+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGH 80 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEecc
Confidence 478999999999899999999999999999999999999999999999999999999998753 35899999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCC
Q 006442 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (645)
Q Consensus 169 ~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (645)
++.+++..|+.+|+..... . .. .. +.++.++++.+|+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~---------------~--------------------------~~-~~-~~~~~~~l~~~~l 117 (198)
T TIGR01189 81 LPGLKPELSALENLHFWAA---------------I--------------------------HG-GA-QRTIEDALAAVGL 117 (198)
T ss_pred CcccccCCcHHHHHHHHHH---------------H--------------------------cC-Cc-HHHHHHHHHHcCC
Confidence 9887777899999752100 0 00 00 2245566777888
Q ss_pred CcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCe
Q 006442 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTK 325 (645)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d~ 325 (645)
. +..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|+ +.|.|||++||+...+ .|++
T Consensus 118 ~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~--~~~~ 194 (198)
T TIGR01189 118 T-GFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL--VEAR 194 (198)
T ss_pred H-HHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc--cceE
Confidence 6 56688899999999999999999999999999999999999999999988875 3588999999998655 3566
Q ss_pred EEE
Q 006442 326 IVE 328 (645)
Q Consensus 326 i~~ 328 (645)
++.
T Consensus 195 ~~~ 197 (198)
T TIGR01189 195 ELR 197 (198)
T ss_pred Eee
Confidence 653
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=315.63 Aligned_cols=195 Identities=27% Similarity=0.380 Sum_probs=152.3
Q ss_pred EEEEeEEEEeCCe-----eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCcc
Q 006442 98 VKLENISKSYKGV-----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172 (645)
Q Consensus 98 i~i~nls~~y~~~-----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~ 172 (645)
|+++|++++|++. ++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++| +|+|++|++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g---~i~~~~q~~~l 77 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG---SIAYVSQEPWI 77 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC---EEEEEecCchh
Confidence 4789999999764 699999999999999999999999999999999999999999999986 79999999987
Q ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCccc
Q 006442 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (645)
Q Consensus 173 ~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~ 252 (645)
+ ..|++||+....... . +......+. ..+...+... ..|+. ..
T Consensus 78 ~-~~t~~enl~~~~~~~--~----~~~~~~~~~---------------------------~~l~~~~~~~--~~~~~-~~ 120 (204)
T cd03250 78 Q-NGTIRENILFGKPFD--E----ERYEKVIKA---------------------------CALEPDLEIL--PDGDL-TE 120 (204)
T ss_pred c-cCcHHHHhccCCCcC--H----HHHHHHHHH---------------------------cCcHHHHHhc--cCccc-ce
Confidence 5 679999986321100 0 000000000 0001111110 11222 23
Q ss_pred ccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH-HHc---cCCCeEEEEecCHHHHHhhcCeEEE
Q 006442 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG-YLG---KQDVPMVIISHDRAFLDQLCTKIVE 328 (645)
Q Consensus 253 ~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~-~L~---~~g~tvIivsHd~~~l~~~~d~i~~ 328 (645)
.++.+.+||||||||++|||||+.+|+++||||||++||+.+.+++.+ +++ +.+.|||++||+++.+.. ||++++
T Consensus 121 ~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~~ 199 (204)
T cd03250 121 IGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVV 199 (204)
T ss_pred ecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEEEE
Confidence 456689999999999999999999999999999999999999988876 443 347899999999999998 999999
Q ss_pred EcCce
Q 006442 329 TEMGV 333 (645)
Q Consensus 329 l~~G~ 333 (645)
+++|+
T Consensus 200 l~~G~ 204 (204)
T cd03250 200 LDNGR 204 (204)
T ss_pred EeCCC
Confidence 98874
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=342.35 Aligned_cols=201 Identities=26% Similarity=0.441 Sum_probs=176.4
Q ss_pred EEEEEeeeeeeCCe--eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---c-------c
Q 006442 424 VVTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---P-------N 491 (645)
Q Consensus 424 ~i~~~~v~~~y~~~--~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---~-------~ 491 (645)
.++++||+|+|++. ++|+|+||++.+||++||+|++|||||||+.+|+|.++|++|+|.++|.++. . .
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~ 415 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETIS 415 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHh
Confidence 79999999999865 5999999999999999999999999999999999999999999999997652 1 1
Q ss_pred hhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhh-----------ccCcCcCCHhHHHHHHHHHHHcc
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML-----------DRKVSLLSGGEKARLAFCKFMVK 560 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~-----------~~~~~~LSgGqkqrv~lAral~~ 560 (645)
...|. ..+ ++.|+++|+..+.++.+++++.++|+++|+. +.. +.....||||||||++|||+|++
T Consensus 416 vl~Qr--~hl-F~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~-~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~ 491 (573)
T COG4987 416 VLTQR--VHL-FSGTLRDNLRLANPDASDEELWAALQQVGLE-KLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLH 491 (573)
T ss_pred hhccc--hHH-HHHHHHHHHhhcCCCCCHHHHHHHHHHcCHH-HHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHc
Confidence 22332 233 6789999999999888999999999999985 332 23345899999999999999999
Q ss_pred CCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 561 ~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
+.+++||||||.|||+.+.+.+.+.|.+. ++|+|+|||++..++. ||||++|++|++++ .|.+.+.+.
T Consensus 492 dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~-~drIivl~~Gkiie-~G~~~~Ll~ 561 (573)
T COG4987 492 DAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER-MDRIIVLDNGKIIE-EGTHAELLA 561 (573)
T ss_pred CCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhh-cCEEEEEECCeeee-cCCHHhhhc
Confidence 99999999999999999999999998754 5699999999999976 99999999999996 689888876
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=339.15 Aligned_cols=196 Identities=28% Similarity=0.381 Sum_probs=168.2
Q ss_pred eeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------------cchhc
Q 006442 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------------PNYFE 494 (645)
Q Consensus 429 ~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------------~~~~~ 494 (645)
|++++|+++.+ ++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++
T Consensus 4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~ 81 (354)
T TIGR02142 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVF 81 (354)
T ss_pred EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEe
Confidence 88999987664 999999999999999999999999999999999999999999997652 12444
Q ss_pred cchhhcCCCCCCHHHHHHhhhccc----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCC
Q 006442 495 QNQAEALDLDKTVLETVAEAAEDW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (645)
Q Consensus 495 q~~~~~l~~~~tv~e~v~~~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP 570 (645)
|+ ..+++.+|+.+|+.+..... ....+.++++.+++. +..++++.+|||||||||+|||||+.+|++||||||
T Consensus 82 q~--~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEP 158 (354)
T TIGR02142 82 QE--ARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIG-HLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEP 158 (354)
T ss_pred cC--CccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 43 45667789999998653221 123478899999995 678999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 571 TNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 571 t~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|++||+.+++.+.+.|+++ +.|||+||||++++..+||++++|++|++.. .|..+++..
T Consensus 159 ts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~~ 221 (354)
T TIGR02142 159 LAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAA-AGPIAEVWA 221 (354)
T ss_pred CcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEE-ECCHHHHhc
Confidence 9999999999999988764 4699999999999999999999999999985 466666543
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=326.26 Aligned_cols=206 Identities=25% Similarity=0.388 Sum_probs=170.4
Q ss_pred CCCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCeeEEEECceecc-----
Q 006442 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL----- 489 (645)
Q Consensus 420 ~~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~~~----- 489 (645)
++.++|+++|++++|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 20 ~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 20 PKKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred CCceEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 45668999999999988889999999999999999999999999999999999997 69999999997652
Q ss_pred -------cchhccchhhcCCCCCCHHHHHHhhhc--cc-c----HHHHHHHHhhcCCC---hhhhccCcCcCCHhHHHHH
Q 006442 490 -------PNYFEQNQAEALDLDKTVLETVAEAAE--DW-R----IDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARL 552 (645)
Q Consensus 490 -------~~~~~q~~~~~l~~~~tv~e~v~~~~~--~~-~----~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqkqrv 552 (645)
.+|++|+ ..++. .|+.+|+..... .. . ...+.+.++.+++. .+..++++.+||||||||+
T Consensus 100 ~~~~~~~i~~v~q~--~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv 176 (271)
T PRK14238 100 VEELRTNVGMVFQK--PNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRL 176 (271)
T ss_pred HHHHhhhEEEEecC--Ccccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHH
Confidence 1344444 23433 599999975431 11 1 12345566666431 2456789999999999999
Q ss_pred HHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 553 AFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 553 ~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
+|||||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++.++|||+++|++|++... |+.+++.
T Consensus 177 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~-g~~~~~~ 254 (271)
T PRK14238 177 CIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEY-DDTDKIF 254 (271)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEe-CCHHHHH
Confidence 9999999999999999999999999999999999876 46999999999999999999999999999864 6666654
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=314.66 Aligned_cols=186 Identities=28% Similarity=0.462 Sum_probs=163.1
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---------cchhcc
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNYFEQ 495 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------~~~~~q 495 (645)
|+++|+++.|+++.+|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++. .+|++|
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGH 80 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEecc
Confidence 47899999999888999999999999999999999999999999999999999999999997752 123343
Q ss_pred chhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCC
Q 006442 496 NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575 (645)
Q Consensus 496 ~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD 575 (645)
+ ..+.+..|+.+|+...........+..+++.+++. +..++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 81 ~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD 157 (201)
T cd03231 81 A--PGIKTTLSVLENLRFWHADHSDEQVEEALARVGLN-GFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALD 157 (201)
T ss_pred c--cccCCCcCHHHHHHhhcccccHHHHHHHHHHcCCh-hhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 3 34556789999997654333456678899999995 56788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEE
Q 006442 576 IPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEV 613 (645)
Q Consensus 576 ~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l 613 (645)
+.+++.+.+.|.++ +.|+|+||||...+..+|++++++
T Consensus 158 ~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 158 KAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999865 569999999999999999999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=326.65 Aligned_cols=203 Identities=28% Similarity=0.381 Sum_probs=172.1
Q ss_pred EEEEEeeeeeeCC---eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------c
Q 006442 424 VVTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------P 490 (645)
Q Consensus 424 ~i~~~~v~~~y~~---~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~ 490 (645)
+|+++|++++|++ .++|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 6999999999974 35899999999999999999999999999999999999999999999998753 2
Q ss_pred chhccchhhcCCCCCCHHHHHHhhhcc--cc----HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCe
Q 006442 491 NYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (645)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~v~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 564 (645)
+|++|+.. ...+..|+.+|+...... .. .+.+..+++.+++ .+..++++..||||||||++|||||+.+|++
T Consensus 84 ~~v~q~~~-~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LS~G~~qrv~lAraL~~~p~l 161 (277)
T PRK13642 84 GMVFQNPD-NQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNM-LDFKTREPARLSGGQKQRVAVAGIIALRPEI 161 (277)
T ss_pred EEEEECHH-HhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCC-HhHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 45555432 234567999999754321 11 1346788999999 4678899999999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 565 LVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 565 LlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|||||||++||+.++..+.+.|.++ +.|||+||||++++. .||++++|++|+++. .|+.+++..
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~~~~ 229 (277)
T PRK13642 162 IILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIK-EAAPSELFA 229 (277)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEE-eCCHHHHhc
Confidence 9999999999999999999998754 569999999999997 599999999999985 467766653
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=322.04 Aligned_cols=200 Identities=25% Similarity=0.361 Sum_probs=166.8
Q ss_pred CcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC--C---CeeEEEECceecc-------
Q 006442 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK--P---RGGEVLLGEHNVL------- 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~--p---~~G~i~~~g~~~~------- 489 (645)
+++|+++|++++|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++.
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 3 KKIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred cceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 457999999999998889999999999999999999999999999999999975 4 5899999998652
Q ss_pred -----cchhccchhhcCCCCCCHHHHHHhhhcc---cc----HHHHHHHHhhcCCC---hhhhccCcCcCCHhHHHHHHH
Q 006442 490 -----PNYFEQNQAEALDLDKTVLETVAEAAED---WR----IDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAF 554 (645)
Q Consensus 490 -----~~~~~q~~~~~l~~~~tv~e~v~~~~~~---~~----~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqkqrv~l 554 (645)
.+|+.|+ ..+.+ .|+.+|+...... .. .+.+...++.+++. .+..++.+.+|||||||||+|
T Consensus 83 ~~~~~i~~~~q~--~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~l 159 (252)
T PRK14255 83 QLRKQVGMVFQQ--PNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCI 159 (252)
T ss_pred HhcCeEEEEECC--CccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHH
Confidence 2244443 23434 6999999764211 11 23355667777653 245678899999999999999
Q ss_pred HHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCC
Q 006442 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGD 624 (645)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~ 624 (645)
||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++.++|||+++|++|+++.+..+
T Consensus 160 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 231 (252)
T PRK14255 160 ARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADT 231 (252)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999876 36999999999999999999999999999875333
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=329.98 Aligned_cols=222 Identities=20% Similarity=0.315 Sum_probs=170.6
Q ss_pred CCccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEEcCCC--------
Q 006442 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN-------- 160 (645)
Q Consensus 94 ~~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~-----p~~G~I~~~~~~-------- 160 (645)
...+|+++|++++|+++++|+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 42 ~~~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~ 121 (305)
T PRK14264 42 GDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121 (305)
T ss_pred CCceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccH
Confidence 3457999999999998889999999999999999999999999999999999986 689999987632
Q ss_pred ----ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCC-hhcH
Q 006442 161 ----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN-LDTL 235 (645)
Q Consensus 161 ----~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 235 (645)
..++|++|++.++. .||+||+...+..... ... ......+ ... ....
T Consensus 122 ~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~-----------~~~-----~~~~~~~-----------~~~~~~~~ 173 (305)
T PRK14264 122 VELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGD-----------INT-----GLLARLL-----------GRDDKDAE 173 (305)
T ss_pred HHHhhceEEEccCCcccc-ccHHHHHHhHHhhccc-----------ccc-----ccccccc-----------ccCchHHH
Confidence 25999999987755 5999998643211000 000 0000000 000 0112
Q ss_pred HHHHHhhchhcCCC---cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEE
Q 006442 236 DAKVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMV 310 (645)
Q Consensus 236 ~~~i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvI 310 (645)
++.+.+++..+++. ....++.+.+|||||||||+|||||+++|+||||||||+|||+.++..+.++|++ .+.|||
T Consensus 174 ~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tii 253 (305)
T PRK14264 174 DELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVV 253 (305)
T ss_pred HHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEE
Confidence 34455666777663 1345778899999999999999999999999999999999999999999988753 258999
Q ss_pred EEecCHHHHHhhcCeE-EEEcCceeEEeccChHHH
Q 006442 311 IISHDRAFLDQLCTKI-VETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 311 ivsHd~~~l~~~~d~i-~~l~~G~~~~~~g~~~~~ 344 (645)
++||+++++..+||++ +++++|++. ..|...++
T Consensus 254 ivtH~~~~i~~~~d~i~~~l~~G~i~-~~g~~~~~ 287 (305)
T PRK14264 254 VVTHNMQQAARISDQTAVFLTGGELV-EYDDTDKI 287 (305)
T ss_pred EEEcCHHHHHHhcCEEEEEecCCEEE-EeCCHHHH
Confidence 9999999999999997 567999884 44655443
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=357.77 Aligned_cols=202 Identities=24% Similarity=0.315 Sum_probs=174.7
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----------cc
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PN 491 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~~ 491 (645)
++|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 4 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 83 (510)
T PRK09700 4 PYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIG 83 (510)
T ss_pred ceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeE
Confidence 5799999999999888999999999999999999999999999999999999999999999997752 23
Q ss_pred hhccchhhcCCCCCCHHHHHHhhhc------c-------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHH
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAAE------D-------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~~------~-------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral 558 (645)
|++|+ ..+.+..|+.+|+..... . ....++.++++.+|+. +..++++.+|||||||||+|||||
T Consensus 84 ~v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrv~ia~al 160 (510)
T PRK09700 84 IIYQE--LSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK-VDLDEKVANLSISHKQMLEIAKTL 160 (510)
T ss_pred EEeec--ccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC-CCcccchhhCCHHHHHHHHHHHHH
Confidence 44443 345667899999975321 0 0123567889999995 667999999999999999999999
Q ss_pred ccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHH
Q 006442 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQV 628 (645)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~ 628 (645)
+.+|++|||||||++||+.++..+.+.|++. +.|||+||||++++..+||++++|++|++. +.|+++++
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 232 (510)
T PRK09700 161 MLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV-CSGMVSDV 232 (510)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEe-eecchhhC
Confidence 9999999999999999999999999998764 469999999999999999999999999997 45666654
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=308.29 Aligned_cols=174 Identities=34% Similarity=0.559 Sum_probs=148.7
Q ss_pred EEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCCCCC
Q 006442 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDK 505 (645)
Q Consensus 426 ~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~~ 505 (645)
+++|++++|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++......
T Consensus 1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~----------- 69 (180)
T cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPK----------- 69 (180)
T ss_pred CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHH-----------
Confidence 478999999888899999999999999999999999999999999999999999999999765310000
Q ss_pred CHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHH
Q 006442 506 TVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585 (645)
Q Consensus 506 tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~ 585 (645)
.....+.. +..+++.+++. +..++.+.+||||||||++||||++.+|++|||||||++||+.+++.+.+.
T Consensus 70 ~~~~~i~~---------~~q~l~~~gl~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~ 139 (180)
T cd03214 70 ELARKIAY---------VPQALELLGLA-HLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL 139 (180)
T ss_pred HHHHHHhH---------HHHHHHHcCCH-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 00001111 11178888885 567889999999999999999999999999999999999999999999999
Q ss_pred HHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEe
Q 006442 586 ISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (645)
Q Consensus 586 l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~ 620 (645)
|.++ +.|+|++|||++++.++||++++|++|++..
T Consensus 140 l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 178 (180)
T cd03214 140 LRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVA 178 (180)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9865 4599999999999999999999999999864
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=326.07 Aligned_cols=204 Identities=25% Similarity=0.409 Sum_probs=171.9
Q ss_pred CcEEEEEeeeeeeCC--eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------
Q 006442 422 RSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~--~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (645)
.++|+++|+++.|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 5 ~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 347999999999975 45999999999999999999999999999999999999999999999998752
Q ss_pred cchhccchhhcCCCCCCHHHHHHhhhcc--c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCC
Q 006442 490 PNYFEQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (645)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~v~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 563 (645)
.+|++|+.. .+.+..++.+|+...... . ....+..+++.+++. +..++++.+||||||||++||||++.+|+
T Consensus 85 i~~v~q~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~ 162 (269)
T PRK13648 85 IGIVFQNPD-NQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDML-ERADYEPNALSGGQKQRVAIAGVLALNPS 162 (269)
T ss_pred eeEEEeChH-HhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCc-hhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 234555432 234567889988664321 1 123567889999995 67789999999999999999999999999
Q ss_pred eEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 564 LLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 564 lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
+|||||||++||+.++..+.+.|+++ +.|||+||||++++.. |||+++|++|++.. .|+.+++.
T Consensus 163 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~-~g~~~~~~ 230 (269)
T PRK13648 163 VIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYK-EGTPTEIF 230 (269)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEE-ecCHHHHh
Confidence 99999999999999999999999764 4599999999999986 99999999999985 46666654
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=370.60 Aligned_cols=206 Identities=26% Similarity=0.472 Sum_probs=173.6
Q ss_pred CCcEEEEEeeeeeeCCe---eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc-------
Q 006442 421 GRSVVTIKNLEFGYEDR---LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP------- 490 (645)
Q Consensus 421 ~~~~i~~~~v~~~y~~~---~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~------- 490 (645)
.++.|+++||+|+||.+ ++|+|+||.|++|+.+||||+|||||||++++|.|+++|++|+|.+||.++..
T Consensus 347 ~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr 426 (1228)
T KOG0055|consen 347 IKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLR 426 (1228)
T ss_pred cccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHH
Confidence 34569999999999976 48999999999999999999999999999999999999999999999988742
Q ss_pred ---chhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCC------hh----hhccCcCcCCHhHHHHHHHHHH
Q 006442 491 ---NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK------AD----MLDRKVSLLSGGEKARLAFCKF 557 (645)
Q Consensus 491 ---~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~------~~----~~~~~~~~LSgGqkqrv~lAra 557 (645)
+.+.|. + ..+..|+.||+.++.++...+++.++++..+.. ++ .......+||||||||+|||||
T Consensus 427 ~~iglV~Qe--P-vlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARa 503 (1228)
T KOG0055|consen 427 SQIGLVSQE--P-VLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARA 503 (1228)
T ss_pred hhcCeeeec--h-hhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHH
Confidence 233443 2 557899999999998777766666666554431 01 1123334699999999999999
Q ss_pred HccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHH
Q 006442 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSL 631 (645)
Q Consensus 558 l~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~ 631 (645)
|+++|+|||||||||+||+++++.++++|.+. +.|.|+|+|++.++.+ +|+|++|++|+|++ .|+-+++++.
T Consensus 504 lv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~v~~~G~IvE-~G~h~ELi~~ 577 (1228)
T KOG0055|consen 504 LVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVE-QGTHDELIAL 577 (1228)
T ss_pred HHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEEEEECCEEEE-ecCHHHHHhc
Confidence 99999999999999999999999999999976 4699999999999998 99999999999996 5776666543
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=321.24 Aligned_cols=203 Identities=25% Similarity=0.373 Sum_probs=169.4
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC-----eeEEEECceecc--------
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-----GGEVLLGEHNVL-------- 489 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~-----~G~i~~~g~~~~-------- 489 (645)
++|+++|++++|+++.+|+++||+|.+|++++|+|+||||||||+++|+|+++|+ +|+|.++|.++.
T Consensus 3 ~~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 82 (251)
T PRK14249 3 PKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVN 82 (251)
T ss_pred ceEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHH
Confidence 4699999999998888999999999999999999999999999999999999987 699999997652
Q ss_pred ----cchhccchhhcCCCCCCHHHHHHhhhcc---c----cHHHHHHHHhhcCCC---hhhhccCcCcCCHhHHHHHHHH
Q 006442 490 ----PNYFEQNQAEALDLDKTVLETVAEAAED---W----RIDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAFC 555 (645)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~v~~~~~~---~----~~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqkqrv~lA 555 (645)
.+|++|+. .+.+ .|+.+|+...... . ..+.+...++.+++. .+..++++.+|||||||||+||
T Consensus 83 ~~~~i~~v~q~~--~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~la 159 (251)
T PRK14249 83 LRKRVGMVFQQP--NPFP-KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIA 159 (251)
T ss_pred hhceEEEEecCC--ccCc-CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence 22444442 3433 5999999764321 1 113355567777763 2356889999999999999999
Q ss_pred HHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
|||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++.++||++++|++|++..+ ++.++..
T Consensus 160 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~-~~~~~~~ 234 (251)
T PRK14249 160 RVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEY-GRTGEIF 234 (251)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEe-CCHHHHH
Confidence 9999999999999999999999999999999876 36999999999999999999999999999854 6666554
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=322.27 Aligned_cols=206 Identities=26% Similarity=0.387 Sum_probs=178.3
Q ss_pred EEEEEeeeeeeCC----eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-C----CeeEEEECceecc-----
Q 006442 424 VVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-P----RGGEVLLGEHNVL----- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~----~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~-p----~~G~i~~~g~~~~----- 489 (645)
+++++|+++.|.. ..+++||||+|++||++||+|.|||||||+.++|+|+++ | .+|+|.++|.++.
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 3789999999963 368999999999999999999999999999999999997 4 5789999998652
Q ss_pred ---------cchhccchhhcCCCCCCHHHHHHhhhcc---c-----cHHHHHHHHhhcCCChh--hhccCcCcCCHhHHH
Q 006442 490 ---------PNYFEQNQAEALDLDKTVLETVAEAAED---W-----RIDDIKGLLGRCNFKAD--MLDRKVSLLSGGEKA 550 (645)
Q Consensus 490 ---------~~~~~q~~~~~l~~~~tv~e~v~~~~~~---~-----~~~~~~~~L~~~~l~~~--~~~~~~~~LSgGqkq 550 (645)
.++++|++...+++-.++.+.+...... . ..+++.++|+.+|+... ..+.+|++|||||||
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 3467888888899999998877654321 1 13468899999999754 679999999999999
Q ss_pred HHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChh
Q 006442 551 RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626 (645)
Q Consensus 551 rv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~ 626 (645)
||.||.||+.+|+|||.||||.+||...+..+.++|++. +.|+|+||||+..+.++||||+||..|+|++. |+.+
T Consensus 161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~-g~~~ 239 (316)
T COG0444 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEE-GPVE 239 (316)
T ss_pred HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEe-CCHH
Confidence 999999999999999999999999999999999988753 56999999999999999999999999999974 6666
Q ss_pred HHHH
Q 006442 627 QVQS 630 (645)
Q Consensus 627 ~~~~ 630 (645)
++++
T Consensus 240 ~i~~ 243 (316)
T COG0444 240 EIFK 243 (316)
T ss_pred HHhc
Confidence 6554
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-38 Score=324.47 Aligned_cols=206 Identities=26% Similarity=0.351 Sum_probs=171.0
Q ss_pred CCCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CeeEEEECceecc-----
Q 006442 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL----- 489 (645)
Q Consensus 420 ~~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p-----~~G~i~~~g~~~~----- 489 (645)
++.++|+++|++++|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 16 ~~~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 16 PDHSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred CCCceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 345689999999999988899999999999999999999999999999999999863 5899999997652
Q ss_pred -------cchhccchhhcCCCCCCHHHHHHhhhcc--c---cHHHHHHHHhhcCCC---hhhhccCcCcCCHhHHHHHHH
Q 006442 490 -------PNYFEQNQAEALDLDKTVLETVAEAAED--W---RIDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAF 554 (645)
Q Consensus 490 -------~~~~~q~~~~~l~~~~tv~e~v~~~~~~--~---~~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqkqrv~l 554 (645)
.+|++|+. .+. ..|+.+|+...... . ..+.+...++.+++. .+..++++.+|||||||||+|
T Consensus 96 ~~~~~~~i~~v~q~~--~l~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~L 172 (274)
T PRK14265 96 SVKLRRQVGMVFQRP--NPF-PKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCI 172 (274)
T ss_pred hHHHhhcEEEEccCC--ccc-cccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHH
Confidence 12445442 333 35999999764321 1 123355677777763 245678899999999999999
Q ss_pred HHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEe---------CCeEEeeCC
Q 006442 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVK---------GSNLQDYAG 623 (645)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~---------~g~i~~~~~ 623 (645)
||||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++.++|||+++|+ +|++++ .|
T Consensus 173 AraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~-~g 251 (274)
T PRK14265 173 ARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE-FS 251 (274)
T ss_pred HHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE-eC
Confidence 99999999999999999999999999999999876 3599999999999999999999997 799985 47
Q ss_pred ChhHHH
Q 006442 624 DYNQVQ 629 (645)
Q Consensus 624 ~~~~~~ 629 (645)
+.+++.
T Consensus 252 ~~~~~~ 257 (274)
T PRK14265 252 PTEQMF 257 (274)
T ss_pred CHHHHH
Confidence 777664
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-38 Score=324.77 Aligned_cols=205 Identities=24% Similarity=0.367 Sum_probs=171.9
Q ss_pred CcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CeeEEEECceecc-------
Q 006442 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL------- 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p-----~~G~i~~~g~~~~------- 489 (645)
.++|+++|++++|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 19 ~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 19 APAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred CcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 5689999999999988999999999999999999999999999999999999985 6999999997652
Q ss_pred ----cchhccchhhcCCCCCCHHHHHHhhhcc---ccH----HHHHHHHhhcCCCh---hhhccCcCcCCHhHHHHHHHH
Q 006442 490 ----PNYFEQNQAEALDLDKTVLETVAEAAED---WRI----DDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFC 555 (645)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~v~~~~~~---~~~----~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~lA 555 (645)
.+|++|. ..+++ .|+.+|+...... ... ..+...++.+++.. +..++.+.+||||||||++||
T Consensus 99 ~~~~i~~v~q~--~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LA 175 (276)
T PRK14271 99 FRRRVGMLFQR--PNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLA 175 (276)
T ss_pred HhhheEEeccC--CccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHH
Confidence 1344443 23444 7999999764311 121 23456788888853 245788999999999999999
Q ss_pred HHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|||+.+|+||||||||++||+.+++.+.+.|+++ ..|||+||||++++.++|||+++|++|++.. .++.+++.+
T Consensus 176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~-~g~~~~~~~ 251 (276)
T PRK14271 176 RTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVE-EGPTEQLFS 251 (276)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHHh
Confidence 9999999999999999999999999999999876 4699999999999999999999999999985 466666643
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=320.95 Aligned_cols=202 Identities=22% Similarity=0.346 Sum_probs=169.7
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CeeEEEECceecc---------
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL--------- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p-----~~G~i~~~g~~~~--------- 489 (645)
+|+++|+++.|+++++|+++||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~ 82 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEY 82 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHh
Confidence 69999999999888899999999999999999999999999999999999974 8999999997652
Q ss_pred ---cchhccchhhcCCCCCCHHHHHHhhhcc---c----cHHHHHHHHhhcCCCh---hhhccCcCcCCHhHHHHHHHHH
Q 006442 490 ---PNYFEQNQAEALDLDKTVLETVAEAAED---W----RIDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFCK 556 (645)
Q Consensus 490 ---~~~~~q~~~~~l~~~~tv~e~v~~~~~~---~----~~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~lAr 556 (645)
.+|++|+ ..+. ..|+.+|+...... . ....+..+++.+++.. ...++++.+||||||||++|||
T Consensus 83 ~~~i~~~~q~--~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~ 159 (250)
T PRK14262 83 RKKVGMVFQK--PTPF-PMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIAR 159 (250)
T ss_pred hhhEEEEecC--CccC-cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHH
Confidence 1233443 2343 48999999764321 1 1223566788888742 2468899999999999999999
Q ss_pred HHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 557 al~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++.+..+||++++|++|++.. .|..+++.
T Consensus 160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 233 (250)
T PRK14262 160 ALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIE-YGPTREIV 233 (250)
T ss_pred HHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecCHHHHH
Confidence 999999999999999999999999999999876 3599999999999999999999999999985 46666654
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=318.51 Aligned_cols=201 Identities=23% Similarity=0.460 Sum_probs=164.2
Q ss_pred EEEEeeeeeeCC-eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------cchh
Q 006442 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYF 493 (645)
Q Consensus 425 i~~~~v~~~y~~-~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~~ 493 (645)
|+++|++++|++ +.+++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+
T Consensus 3 l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 82 (229)
T cd03254 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVV 82 (229)
T ss_pred EEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEe
Confidence 789999999974 57999999999999999999999999999999999999999999999997652 2344
Q ss_pred ccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCC----------hhhhccCcCcCCHhHHHHHHHHHHHccCCC
Q 006442 494 EQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK----------ADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (645)
Q Consensus 494 ~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~----------~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 563 (645)
+|+. .+. ..|+.+|+..........++...++.+++. ....++.+.+|||||||||+|||||+.+|+
T Consensus 83 ~q~~--~~~-~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 83 LQDT--FLF-SGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred cCCc--hhh-hhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 5442 333 359999987653322333344444444331 123456678999999999999999999999
Q ss_pred eEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 564 LLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 564 lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
+|||||||++||+.+++.+.+.|.++ +.|||+||||++++.. ||++++|++|++.. .++++++.+
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~-~~~~~~~~~ 226 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN-ADKILVLDDGKIIE-EGTHDELLA 226 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEEeCCeEEE-eCCHHHHHh
Confidence 99999999999999999999999876 3599999999999975 99999999999985 577777654
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=323.58 Aligned_cols=206 Identities=24% Similarity=0.403 Sum_probs=159.8
Q ss_pred EEEEeEEEEeCC---eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceEE
Q 006442 98 VKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIA 164 (645)
Q Consensus 98 i~i~nls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i~ 164 (645)
|+++|++++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 478999999964 469999999999999999999999999999999999999999999998732 2599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
|++|++.++. .|++||+....... . . +.+....+ ... +.+++.
T Consensus 81 ~~~q~~~~~~-~tv~e~l~~~~~~~-~-~---~~~~~~~~---------------------------~~~----~~~~~~ 123 (238)
T cd03249 81 LVSQEPVLFD-GTIAENIRYGKPDA-T-D---EEVEEAAK---------------------------KAN----IHDFIM 123 (238)
T ss_pred EECCchhhhh-hhHHHHhhccCCCC-C-H---HHHHHHHH---------------------------HcC----hHHHHH
Confidence 9999987754 69999985321100 0 0 00000000 000 111122
Q ss_pred hc--CCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHH
Q 006442 245 EL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320 (645)
Q Consensus 245 ~l--gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~ 320 (645)
.+ ++. ...++.+.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++ .|+|||++||+++++.
T Consensus 124 ~l~~~~~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~ 202 (238)
T cd03249 124 SLPDGYD-TLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR 202 (238)
T ss_pred hhccccc-eeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 22 332 345677899999999999999999999999999999999999999999988743 5789999999999997
Q ss_pred hhcCeEEEEcCceeEEeccChHH
Q 006442 321 QLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 321 ~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
.||+++++++|++ .+.|+..+
T Consensus 203 -~~d~v~~l~~G~i-~~~~~~~~ 223 (238)
T cd03249 203 -NADLIAVLQNGQV-VEQGTHDE 223 (238)
T ss_pred -hCCEEEEEECCEE-EEeCCHHH
Confidence 8999999999997 34555433
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=360.98 Aligned_cols=211 Identities=26% Similarity=0.393 Sum_probs=165.6
Q ss_pred cEEEEeEEEEe-CCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc----------eEEE
Q 006442 97 GVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAF 165 (645)
Q Consensus 97 ~i~i~nls~~y-~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~----------~i~~ 165 (645)
.|+++|++|.| +++++|+|+||+|++|+++||||+||||||||+++|+|++ |++|+|.++|.+. .|+|
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~ 427 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSW 427 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEE
Confidence 49999999766 5567999999999999999999999999999999999999 9999999997542 5999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchh
Q 006442 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (645)
Q Consensus 166 v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (645)
|+|+|++ ++.||+|||..+-.+ .. .+++.++++.+ .+.+.+.++ .
T Consensus 428 v~Q~~~L-F~~TI~eNI~~g~~~-~~----~eei~~al~~a---------------------------~l~~~i~~l--p 472 (588)
T PRK11174 428 VGQNPQL-PHGTLRDNVLLGNPD-AS----DEQLQQALENA---------------------------WVSEFLPLL--P 472 (588)
T ss_pred ecCCCcC-CCcCHHHHhhcCCCC-CC----HHHHHHHHHHh---------------------------CHHHHHHhc--c
Confidence 9999987 678999999743111 00 01222222211 111122221 1
Q ss_pred cCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhc
Q 006442 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLC 323 (645)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~ 323 (645)
-|+.+..+++ ..+||||||||++|||||+++|+|||||||||+||+++.+.+.+.|.+ .++|+|+|||+++.+.. |
T Consensus 473 ~G~dT~vge~-G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~-a 550 (588)
T PRK11174 473 QGLDTPIGDQ-AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ-W 550 (588)
T ss_pred cccccccccC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHh-C
Confidence 1444444433 678999999999999999999999999999999999999999887754 57999999999998875 9
Q ss_pred CeEEEEcCceeEEeccChHHHHH
Q 006442 324 TKIVETEMGVSRTYEGNYSQYVL 346 (645)
Q Consensus 324 d~i~~l~~G~~~~~~g~~~~~~~ 346 (645)
|+|+++++|++ ...|++++.+.
T Consensus 551 D~Iivl~~G~i-~e~G~~~eL~~ 572 (588)
T PRK11174 551 DQIWVMQDGQI-VQQGDYAELSQ 572 (588)
T ss_pred CEEEEEeCCeE-eecCCHHHHHh
Confidence 99999999998 45677665543
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=315.47 Aligned_cols=190 Identities=30% Similarity=0.429 Sum_probs=163.7
Q ss_pred EEEEeeeeeeCC----eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----------
Q 006442 425 VTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------- 489 (645)
Q Consensus 425 i~~~~v~~~y~~----~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------- 489 (645)
++++|+++.|++ +.+|+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 789999999974 67999999999999999999999999999999999999999999999998652
Q ss_pred --cchhccchhhcCCCCCCHHHHHHhhhcc---cc----HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHcc
Q 006442 490 --PNYFEQNQAEALDLDKTVLETVAEAAED---WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560 (645)
Q Consensus 490 --~~~~~q~~~~~l~~~~tv~e~v~~~~~~---~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~ 560 (645)
.+|++|+ ..+.+..|+.+|+...... .. ...+.++++++++. +..++++.+||+|||||++|||||+.
T Consensus 82 ~~i~~~~q~--~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrv~laral~~ 158 (220)
T TIGR02982 82 RNIGYIFQA--HNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLG-DHLDYYPHNLSGGQKQRVAIARALVH 158 (220)
T ss_pred hheEEEcCC--hhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 1344444 3455668999998764321 11 23578899999994 67789999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeE
Q 006442 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNL 618 (645)
Q Consensus 561 ~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i 618 (645)
+|++|||||||++||+.++..+.+.|+++ +.|||+||||++.. ++||+|++|++|++
T Consensus 159 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 159 RPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-DVADRIVHMEDGKL 219 (220)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEEECCEE
Confidence 99999999999999999999999988754 46999999999864 78999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=355.44 Aligned_cols=196 Identities=24% Similarity=0.354 Sum_probs=171.1
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----------cc
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PN 491 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~~ 491 (645)
++|+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 82 (501)
T PRK10762 3 ALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG 82 (501)
T ss_pred ceEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 4799999999998888999999999999999999999999999999999999999999999997652 23
Q ss_pred hhccchhhcCCCCCCHHHHHHhhhcc--------cc--HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccC
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAAED--------WR--IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKP 561 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~~~--------~~--~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~ 561 (645)
|++|+ ..+.+..|+.+|+...... +. ...+.++++.+++. +..++++.+|||||||||+|||||+.+
T Consensus 83 ~v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~ 159 (501)
T PRK10762 83 IIHQE--LNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLR-FSSDKLVGELSIGEQQMVEIAKVLSFE 159 (501)
T ss_pred EEEcc--hhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCC-CCccCchhhCCHHHHHHHHHHHHHhcC
Confidence 45554 3456778999999764210 11 23467889999995 567899999999999999999999999
Q ss_pred CCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEee
Q 006442 562 STLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDY 621 (645)
Q Consensus 562 p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~ 621 (645)
|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++..
T Consensus 160 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~ 222 (501)
T PRK10762 160 SKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAE 222 (501)
T ss_pred CCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 9999999999999999999999888764 46999999999999999999999999999753
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=320.05 Aligned_cols=187 Identities=28% Similarity=0.373 Sum_probs=158.9
Q ss_pred eeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---------cchhccchhhcCC
Q 006442 432 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNYFEQNQAEALD 502 (645)
Q Consensus 432 ~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------~~~~~q~~~~~l~ 502 (645)
.+|+.+++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .+|+.+. ...+.
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 107 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQ-KTQLW 107 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCC-ccccC
Confidence 5567778999999999999999999999999999999999999999999999987641 1233322 23455
Q ss_pred CCCCHHHHHHhhhcc--c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCH
Q 006442 503 LDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576 (645)
Q Consensus 503 ~~~tv~e~v~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~ 576 (645)
+..|+.+++...... . ....+..+++.+++. +..++++..||||||||++|||||+.+|++|||||||++||+
T Consensus 108 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~ 186 (236)
T cd03267 108 WDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLE-ELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDV 186 (236)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 678999998653221 1 123466788999994 567899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEe
Q 006442 577 PSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (645)
Q Consensus 577 ~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~ 620 (645)
.+++.+.++|.++ +.|||+||||++++.++||++++|++|++..
T Consensus 187 ~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 234 (236)
T cd03267 187 VAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLY 234 (236)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 9999999999875 4599999999999999999999999999864
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=321.16 Aligned_cols=202 Identities=28% Similarity=0.400 Sum_probs=168.0
Q ss_pred CcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcC--CCCCeeEEEECceeccc---------
Q 006442 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--EKPRGGEVLLGEHNVLP--------- 490 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~--~~p~~G~i~~~g~~~~~--------- 490 (645)
+++|+++|+++.|+++.+|+++||+|++||++||+|+||||||||+++|+|+ ++|++|+|.++|.++..
T Consensus 5 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 5 KPILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred CceEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 3479999999999888899999999999999999999999999999999998 58999999999976521
Q ss_pred --chhccchhhcCCCCCCHHHHHHhhhc---------ccc----HHHHHHHHhhcCCChhhhccCcC-cCCHhHHHHHHH
Q 006442 491 --NYFEQNQAEALDLDKTVLETVAEAAE---------DWR----IDDIKGLLGRCNFKADMLDRKVS-LLSGGEKARLAF 554 (645)
Q Consensus 491 --~~~~q~~~~~l~~~~tv~e~v~~~~~---------~~~----~~~~~~~L~~~~l~~~~~~~~~~-~LSgGqkqrv~l 554 (645)
.++.| ...+.+..++.+++..... ... ...+.++|+.+++.....++++. .|||||||||+|
T Consensus 85 ~~~~~~q--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~l 162 (252)
T CHL00131 85 GIFLAFQ--YPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEI 162 (252)
T ss_pred eEEEEec--cccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHH
Confidence 12223 2344556788888764321 011 13467789999996445678887 599999999999
Q ss_pred HHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhh-CCEEEEEeCCeEEeeCCChh
Q 006442 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQI-VNRVVEVKGSNLQDYAGDYN 626 (645)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~-~d~v~~l~~g~i~~~~~~~~ 626 (645)
||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+ ||++++|++|+++. .++.+
T Consensus 163 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~-~~~~~ 237 (252)
T CHL00131 163 LQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIK-TGDAE 237 (252)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEE-ecChh
Confidence 99999999999999999999999999999999865 46999999999999887 89999999999985 45555
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=322.91 Aligned_cols=205 Identities=27% Similarity=0.361 Sum_probs=171.4
Q ss_pred CCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCeeEEEECceecc------
Q 006442 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL------ 489 (645)
Q Consensus 421 ~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~~~------ 489 (645)
..++|+++|++++|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 22 ~~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 22 EQTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred CCcEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 4558999999999988889999999999999999999999999999999999987 48999999998753
Q ss_pred ------cchhccchhhcCCCCCCHHHHHHhhhcc----c---cHHHHHHHHhhcCCCh---hhhccCcCcCCHhHHHHHH
Q 006442 490 ------PNYFEQNQAEALDLDKTVLETVAEAAED----W---RIDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLA 553 (645)
Q Consensus 490 ------~~~~~q~~~~~l~~~~tv~e~v~~~~~~----~---~~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~ 553 (645)
.+|++|. ..++. .|+.+|+...... . ....+.++++.+++.. +..++.+.+|||||||||+
T Consensus 102 ~~~~~~i~~v~q~--~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 178 (272)
T PRK14236 102 AELRRRVGMVFQR--PNPFP-KSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLV 178 (272)
T ss_pred HHHhccEEEEecC--CccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHH
Confidence 1234443 23444 4999999754221 1 1234667788888742 3467889999999999999
Q ss_pred HHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 554 FCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 554 lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
|||||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++.++|||+++|++|++.. .|+.+++.
T Consensus 179 laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 255 (272)
T PRK14236 179 IARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVE-YGDTDTLF 255 (272)
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEe-cCCHHHHh
Confidence 999999999999999999999999999999999866 4699999999999999999999999999985 46666654
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=317.27 Aligned_cols=201 Identities=27% Similarity=0.377 Sum_probs=173.1
Q ss_pred EEEEEeeeeeeCCe------------------------eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCee
Q 006442 424 VVTIKNLEFGYEDR------------------------LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (645)
Q Consensus 424 ~i~~~~v~~~y~~~------------------------~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G 479 (645)
.|+++||++-||.+ .-++++||+|+.||+..|.|-+|||||||+++|.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 47888888877631 137899999999999999999999999999999999999999
Q ss_pred EEEECceeccc--------------chhccchhhcCCCCCCHHHHHHhhhcc------ccHHHHHHHHhhcCCChhhhcc
Q 006442 480 EVLLGEHNVLP--------------NYFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDR 539 (645)
Q Consensus 480 ~i~~~g~~~~~--------------~~~~q~~~~~l~~~~tv~e~v~~~~~~------~~~~~~~~~L~~~~l~~~~~~~ 539 (645)
+|.++|.++.. ..++| ...+.|..||.+|+.++... ...+.+.++|+.+|+. ...++
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ--~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~-~~~~~ 160 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQ--SFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLE-GYADK 160 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhh--hhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCch-hhhhc
Confidence 99999988631 23343 45788999999999987542 2345688999999994 78899
Q ss_pred CcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecCHHHHHhhCCEEEEEeC
Q 006442 540 KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE----YKGTVITVSHDRYFVKQIVNRVVEVKG 615 (645)
Q Consensus 540 ~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~d~v~~l~~ 615 (645)
+|.+|||||||||.|||||+.+|+|||||||+|+|||--+..|++.|.+ .++|||+||||++++.++.|||..|++
T Consensus 161 yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkd 240 (386)
T COG4175 161 YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKD 240 (386)
T ss_pred CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecC
Confidence 9999999999999999999999999999999999999999999987754 467999999999999999999999999
Q ss_pred CeEEeeCCChhHH
Q 006442 616 SNLQDYAGDYNQV 628 (645)
Q Consensus 616 g~i~~~~~~~~~~ 628 (645)
|+|+. .|.++++
T Consensus 241 G~ivQ-~Gtp~eI 252 (386)
T COG4175 241 GEIVQ-VGTPEEI 252 (386)
T ss_pred CeEEE-eCCHHHH
Confidence 99985 4544443
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=319.16 Aligned_cols=200 Identities=24% Similarity=0.476 Sum_probs=162.7
Q ss_pred EEEEeeeeeeCC--eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------cch
Q 006442 425 VTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNY 492 (645)
Q Consensus 425 i~~~~v~~~y~~--~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~ 492 (645)
|+++|++++|+. +++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 478999999963 57999999999999999999999999999999999999999999999997652 245
Q ss_pred hccchhhcCCCCCCHHHHHHhhhccccHHHHH---------HHHhhc--CCChhhhccCcCcCCHhHHHHHHHHHHHccC
Q 006442 493 FEQNQAEALDLDKTVLETVAEAAEDWRIDDIK---------GLLGRC--NFKADMLDRKVSLLSGGEKARLAFCKFMVKP 561 (645)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~---------~~L~~~--~l~~~~~~~~~~~LSgGqkqrv~lAral~~~ 561 (645)
++|+. .+ +..|+.+|+...........+. +.+..+ ++. ...++++.+|||||||||+|||||+.+
T Consensus 81 ~~q~~--~~-~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~LSgG~~qrv~laral~~~ 156 (237)
T cd03252 81 VLQEN--VL-FNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYD-TIVGEQGAGLSGGQRQRIAIARALIHN 156 (237)
T ss_pred EcCCc--hh-ccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCccccc-chhhcCCCcCCHHHHHHHHHHHHHhhC
Confidence 55543 33 3579999997643212222222 233333 332 335678899999999999999999999
Q ss_pred CCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 562 STLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 562 p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|++|||||||++||+.++..+.+.|.++ +.|||++|||++++. .||++++|++|++.. .++.+++.+
T Consensus 157 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~-~~~~~~~~~ 225 (237)
T cd03252 157 PRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK-NADRIIVMEKGRIVE-QGSHDELLA 225 (237)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEE-EcCHHHHHh
Confidence 9999999999999999999999999875 359999999999996 599999999999985 467766654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=357.03 Aligned_cols=210 Identities=23% Similarity=0.404 Sum_probs=172.7
Q ss_pred CccEEEEeEEEEeC-----------CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC---
Q 006442 95 SSGVKLENISKSYK-----------GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--- 160 (645)
Q Consensus 95 ~~~i~i~nls~~y~-----------~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--- 160 (645)
.++|+++|++++|+ ++++|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|.+
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~ 351 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHN 351 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccc
Confidence 45799999999995 3569999999999999999999999999999999999985 89999998631
Q ss_pred ----------ceEEEEeccC--ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHH
Q 006442 161 ----------MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQ 228 (645)
Q Consensus 161 ----------~~i~~v~Q~~--~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (645)
..++|++|++ .+++..||.||+...+.. .. .
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~---------------~~----------------------~ 394 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRV---------------HQ----------------------P 394 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHh---------------cc----------------------c
Confidence 2599999997 366678999998532100 00 0
Q ss_pred hCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----c
Q 006442 229 AVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----K 304 (645)
Q Consensus 229 ~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~ 304 (645)
..+....++++.++++.+|+..+..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|+ +
T Consensus 395 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 474 (529)
T PRK15134 395 TLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQK 474 (529)
T ss_pred cCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHh
Confidence 001112234567788889996446789999999999999999999999999999999999999999999998875 2
Q ss_pred CCCeEEEEecCHHHHHhhcCeEEEEcCceeEEeccChHH
Q 006442 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 305 ~g~tvIivsHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
.|+|||+||||++++..+||+|+++++|++. ..|...+
T Consensus 475 ~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~-~~~~~~~ 512 (529)
T PRK15134 475 HQLAYLFISHDLHVVRALCHQVIVLRQGEVV-EQGDCER 512 (529)
T ss_pred hCCEEEEEeCCHHHHHHhcCeEEEEECCEEE-EEcCHHH
Confidence 4899999999999999999999999999974 4555444
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=304.58 Aligned_cols=204 Identities=25% Similarity=0.422 Sum_probs=181.0
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----------cc
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PN 491 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~~ 491 (645)
..+.++|+.++|+.+.+++++||+|++||++|+.||||+||||.+.++.|+.+|++|.|.+++.++. .+
T Consensus 3 ~~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGig 82 (243)
T COG1137 3 STLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIG 82 (243)
T ss_pred cEEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcc
Confidence 3588999999999999999999999999999999999999999999999999999999999999873 35
Q ss_pred hhccchhhcCCCCCCHHHHHHhhhcc--------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCC
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAAED--------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~~~--------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 563 (645)
|++|. ...+-.+||.+|+...... ....++..+|+.|++ .+..+++..+||||||+|+-|||||+.+|+
T Consensus 83 YLpQE--~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i-~hlr~~~a~sLSGGERRR~EIARaLa~~P~ 159 (243)
T COG1137 83 YLPQE--ASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHI-THLRDSKAYSLSGGERRRVEIARALAANPK 159 (243)
T ss_pred ccccc--chHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhch-HHHhcCcccccccchHHHHHHHHHHhcCCC
Confidence 77765 4567889999999865431 112346689999999 588899999999999999999999999999
Q ss_pred eEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 564 LLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 564 lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
.++||||++|+||-+...+++++... +..|++.-|+..+...+|||.++|..|++.. .|+.++..+
T Consensus 160 fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla-~G~p~ei~~ 228 (243)
T COG1137 160 FILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLA-EGSPEEIVN 228 (243)
T ss_pred EEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEe-cCCHHHHhc
Confidence 99999999999999999999988765 4599999999999999999999999999985 688888764
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=366.93 Aligned_cols=202 Identities=26% Similarity=0.504 Sum_probs=175.4
Q ss_pred cEEEEEeeeeeeC--CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------c
Q 006442 423 SVVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------P 490 (645)
Q Consensus 423 ~~i~~~~v~~~y~--~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~ 490 (645)
..|+++||+|+|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. .
T Consensus 450 ~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 529 (686)
T TIGR03797 450 GAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQL 529 (686)
T ss_pred ceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhcc
Confidence 4599999999995 357999999999999999999999999999999999999999999999998863 2
Q ss_pred chhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhh----------hccCcCcCCHhHHHHHHHHHHHcc
Q 006442 491 NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM----------LDRKVSLLSGGEKARLAFCKFMVK 560 (645)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~----------~~~~~~~LSgGqkqrv~lAral~~ 560 (645)
+|++|+. ..++.|++||+..+.+ ...+++.++++.+++.... ......+||||||||++||||+++
T Consensus 530 ~~v~Q~~---~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~ 605 (686)
T TIGR03797 530 GVVLQNG---RLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVR 605 (686)
T ss_pred EEEccCC---ccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhc
Confidence 4555542 3467899999998765 6677888888888874221 112345799999999999999999
Q ss_pred CCCeEEeeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 561 ~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
+|++||||||||+||+++++.+.+.|++.+.|+|+|||+++.+.. ||+|++|++|++++ .|+.+++.+
T Consensus 606 ~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~-~D~Iivl~~G~iv~-~G~~~~Ll~ 673 (686)
T TIGR03797 606 KPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRN-ADRIYVLDAGRVVQ-QGTYDELMA 673 (686)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHc-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 999999999999999999999999999888899999999999976 99999999999986 588887764
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=306.86 Aligned_cols=162 Identities=33% Similarity=0.478 Sum_probs=144.5
Q ss_pred EEEEeEEEEeCCe--eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC---------ceEEEE
Q 006442 98 VKLENISKSYKGV--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFL 166 (645)
Q Consensus 98 i~i~nls~~y~~~--~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~---------~~i~~v 166 (645)
|+++|++++|++. ++++|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..++|+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 4789999999765 69999999999999999999999999999999999999999999998742 359999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhc
Q 006442 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (645)
Q Consensus 167 ~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (645)
+|++.++ ..|++||+
T Consensus 81 ~q~~~~~-~~tv~~~i---------------------------------------------------------------- 95 (178)
T cd03247 81 NQRPYLF-DTTLRNNL---------------------------------------------------------------- 95 (178)
T ss_pred ccCCeee-cccHHHhh----------------------------------------------------------------
Confidence 9998764 35665552
Q ss_pred CCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcC
Q 006442 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCT 324 (645)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~d 324 (645)
+.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|||++||+++++. .||
T Consensus 96 ----------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d 164 (178)
T cd03247 96 ----------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE-HMD 164 (178)
T ss_pred ----------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCC
Confidence 467999999999999999999999999999999999999999888753 4789999999999997 699
Q ss_pred eEEEEcCceeE
Q 006442 325 KIVETEMGVSR 335 (645)
Q Consensus 325 ~i~~l~~G~~~ 335 (645)
+++++++|++.
T Consensus 165 ~~~~l~~g~i~ 175 (178)
T cd03247 165 KILFLENGKII 175 (178)
T ss_pred EEEEEECCEEE
Confidence 99999999873
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=321.10 Aligned_cols=202 Identities=26% Similarity=0.376 Sum_probs=168.8
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCeeEEEECceecc----------
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL---------- 489 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~~~---------- 489 (645)
-+++|++++|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+.+ |++|+|.++|.++.
T Consensus 6 ~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 85 (251)
T PRK14244 6 ASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLR 85 (251)
T ss_pred EEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHh
Confidence 578999999988889999999999999999999999999999999999986 47999999997652
Q ss_pred --cchhccchhhcCCCCCCHHHHHHhhhc--c------ccHHHHHHHHhhcCCCh---hhhccCcCcCCHhHHHHHHHHH
Q 006442 490 --PNYFEQNQAEALDLDKTVLETVAEAAE--D------WRIDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFCK 556 (645)
Q Consensus 490 --~~~~~q~~~~~l~~~~tv~e~v~~~~~--~------~~~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~lAr 556 (645)
.+|++|+. .+.+ .|+.+|+..... . .....+..+++.+++.. ...++.+.+|||||||||+|||
T Consensus 86 ~~i~~v~q~~--~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar 162 (251)
T PRK14244 86 AKVGMVFQKP--NPFP-KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIAR 162 (251)
T ss_pred hhEEEEecCc--cccc-CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHH
Confidence 13445542 3434 499999875421 1 11234667889999853 2457889999999999999999
Q ss_pred HHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 557 al~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++.++|||+++|++|++.. .+..+++..
T Consensus 163 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~~ 237 (251)
T PRK14244 163 AIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVE-YNTTQEIFK 237 (251)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEE-eCCHHHHhc
Confidence 999999999999999999999999999999865 4699999999999999999999999999985 466666543
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-39 Score=295.94 Aligned_cols=205 Identities=25% Similarity=0.377 Sum_probs=178.4
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc------------
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP------------ 490 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~------------ 490 (645)
+.|+++|+.++||...+|++|||+-..|+.|.|+|.+||||||+|+||.=+.+|+.|.|.++|..+..
T Consensus 5 ~~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad 84 (256)
T COG4598 5 NALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPAD 84 (256)
T ss_pred cceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCC
Confidence 35899999999999999999999999999999999999999999999999999999999999876521
Q ss_pred -----------chhccchhhcCCCCCCHHHHHHhhhc-------cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHH
Q 006442 491 -----------NYFEQNQAEALDLDKTVLETVAEAAE-------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARL 552 (645)
Q Consensus 491 -----------~~~~q~~~~~l~~~~tv~e~v~~~~~-------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv 552 (645)
+++.| ..++...+|+.+|+..+.- ....+.+..+|.++|+. +..+.+|..||||||||+
T Consensus 85 ~~q~~r~Rs~L~mVFQ--~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~-ek~~~YP~~LSGGQQQR~ 161 (256)
T COG4598 85 KRQLQRLRTRLGMVFQ--HFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIA-EKADAYPAHLSGGQQQRV 161 (256)
T ss_pred HHHHHHHHHHhhHhhh--hcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCch-hhhhcCccccCchHHHHH
Confidence 12233 3456678999999987632 22345688999999994 677899999999999999
Q ss_pred HHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 553 AFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 553 ~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
+|||||+.+|++++.|||||+|||+-...+.+.+++. +.|.++|||.+.|+.+++++|+++++|.|.+ .|++++.+
T Consensus 162 aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE-~G~P~qvf 240 (256)
T COG4598 162 AIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE-EGPPEQVF 240 (256)
T ss_pred HHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecc-cCChHHHh
Confidence 9999999999999999999999999998888887754 6799999999999999999999999999975 68888776
Q ss_pred HH
Q 006442 630 SL 631 (645)
Q Consensus 630 ~~ 631 (645)
..
T Consensus 241 ~n 242 (256)
T COG4598 241 GN 242 (256)
T ss_pred cC
Confidence 43
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=339.94 Aligned_cols=207 Identities=22% Similarity=0.284 Sum_probs=167.9
Q ss_pred ccEEEEeEEEEeCC---eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCcc
Q 006442 96 SGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172 (645)
Q Consensus 96 ~~i~i~nls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~ 172 (645)
++++++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|... ++.+.+.+
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~---~i~~~~~l 96 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA---LIAISSGL 96 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee---eEEecccc
Confidence 46999999999976 4699999999999999999999999999999999999999999999987542 33344455
Q ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCccc
Q 006442 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (645)
Q Consensus 173 ~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~ 252 (645)
.+..|++||+..... .. ..+.....+++.++++.+|+. +.
T Consensus 97 ~~~lTV~EnL~l~~~---------------~~------------------------~~~~~e~~e~i~elLe~lgL~-~~ 136 (549)
T PRK13545 97 NGQLTGIENIELKGL---------------MM------------------------GLTKEKIKEIIPEIIEFADIG-KF 136 (549)
T ss_pred CCCCcHHHHHHhhhh---------------hc------------------------CCCHHHHHHHHHHHHHHcCCh-hH
Confidence 566799999852100 00 001112233455677778885 56
Q ss_pred ccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCeEEEE
Q 006442 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVET 329 (645)
Q Consensus 253 ~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d~i~~l 329 (645)
.++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|+ +.|+|||++|||++++..+||+++++
T Consensus 137 ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL 216 (549)
T PRK13545 137 IYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWL 216 (549)
T ss_pred hhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEE
Confidence 788899999999999999999999999999999999999999999988774 45899999999999999999999999
Q ss_pred cCceeEEeccChHHHHH
Q 006442 330 EMGVSRTYEGNYSQYVL 346 (645)
Q Consensus 330 ~~G~~~~~~g~~~~~~~ 346 (645)
++|++. ..|..++...
T Consensus 217 ~~GkIv-~~G~~~el~~ 232 (549)
T PRK13545 217 HYGQVK-EYGDIKEVVD 232 (549)
T ss_pred ECCEEE-EECCHHHHHh
Confidence 999984 4566555443
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=322.77 Aligned_cols=204 Identities=25% Similarity=0.321 Sum_probs=168.8
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCeeEEEECceecc--------
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL-------- 489 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~~~-------- 489 (645)
++|+++||++.|+++++|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 9 ~~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 88 (264)
T PRK14243 9 TVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVE 88 (264)
T ss_pred eEEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHH
Confidence 47999999999988889999999999999999999999999999999999986 47999999997652
Q ss_pred ----cchhccchhhcCCCCCCHHHHHHhhhccc-----cHHHHHHHHhhcCCCh---hhhccCcCcCCHhHHHHHHHHHH
Q 006442 490 ----PNYFEQNQAEALDLDKTVLETVAEAAEDW-----RIDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFCKF 557 (645)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~v~~~~~~~-----~~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~lAra 557 (645)
.+|+.|+. .+.. .|+.+|+....... ..+.+..+++.+++.. ...++++.+||||||||++||||
T Consensus 89 ~~~~i~~v~q~~--~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~lara 165 (264)
T PRK14243 89 VRRRIGMVFQKP--NPFP-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARA 165 (264)
T ss_pred HhhhEEEEccCC--cccc-ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHH
Confidence 13444432 3333 59999997643211 1233556677777631 24578899999999999999999
Q ss_pred HccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhCCEEEEEe---------CCeEEeeCCChh
Q 006442 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVK---------GSNLQDYAGDYN 626 (645)
Q Consensus 558 l~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~d~v~~l~---------~g~i~~~~~~~~ 626 (645)
|+.+|++|||||||++||+.++..+.+.|.++. .|||+||||++++.++|||+++|+ +|++++ .+..+
T Consensus 166 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~-~~~~~ 244 (264)
T PRK14243 166 IAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE-FDRTE 244 (264)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE-eCCHH
Confidence 999999999999999999999999999998763 599999999999999999999998 799985 46666
Q ss_pred HHHH
Q 006442 627 QVQS 630 (645)
Q Consensus 627 ~~~~ 630 (645)
++.+
T Consensus 245 ~~~~ 248 (264)
T PRK14243 245 KIFN 248 (264)
T ss_pred HHHh
Confidence 6643
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=319.98 Aligned_cols=207 Identities=19% Similarity=0.238 Sum_probs=166.4
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEEcCCC----------
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN---------- 160 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p-----~~G~I~~~~~~---------- 160 (645)
..+.+++++++|++.++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 7 ~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~ 86 (261)
T PRK14263 7 IVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVV 86 (261)
T ss_pred ceEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHh
Confidence 458999999999988899999999999999999999999999999999999986 79999998642
Q ss_pred --ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHH
Q 006442 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (645)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (645)
..++|++|++.++ ..|+.||+....... ... .....+
T Consensus 87 ~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~---------------------------------------~~~-~~~~~~ 125 (261)
T PRK14263 87 VRRYIGMVFQQPNPF-SMSIFDNVAFGLRLN---------------------------------------RYK-GDLGDR 125 (261)
T ss_pred hhhceEEEecCCccc-cccHHHHHHHHHhhc---------------------------------------Cch-HHHHHH
Confidence 2499999998875 689999985321000 000 001123
Q ss_pred HHhhchhcCCCcc---cccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 006442 239 VSKLMPELGFTAD---DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (645)
Q Consensus 239 i~~ll~~lgl~~~---~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivs 313 (645)
+.++++.+|+... ..++++.+|||||+||++|||||+.+|++|||||||+|||+.++.++.++|++ .+.|||++|
T Consensus 126 ~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~is 205 (261)
T PRK14263 126 VKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVT 205 (261)
T ss_pred HHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 4445555555321 23466889999999999999999999999999999999999999999988753 468999999
Q ss_pred cCHHHHHhhcCeEEEEc--------CceeEEeccChHHH
Q 006442 314 HDRAFLDQLCTKIVETE--------MGVSRTYEGNYSQY 344 (645)
Q Consensus 314 Hd~~~l~~~~d~i~~l~--------~G~~~~~~g~~~~~ 344 (645)
|+++++.++||+|++++ +|++. ..|..+++
T Consensus 206 H~~~~i~~~~d~v~~l~~~~~~~~~~G~i~-~~g~~~~~ 243 (261)
T PRK14263 206 HNMQQAIRVADTTAFFSVDISQGTRTGYLV-EMGPTAQI 243 (261)
T ss_pred CCHHHHHHhCCEEEEEecccccccCCceEE-EeCCHHHH
Confidence 99999999999999995 78774 44554443
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-38 Score=319.19 Aligned_cols=202 Identities=25% Similarity=0.350 Sum_probs=169.0
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CeeEEEECceecc---------
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL--------- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p-----~~G~i~~~g~~~~--------- 489 (645)
+++++|+++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~ 82 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLR 82 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHH
Confidence 58999999999988899999999999999999999999999999999999986 5999999997652
Q ss_pred --cchhccchhhcCCCCCCHHHHHHhhhccc---c----HHHHHHHHhhcCCCh---hhhccCcCcCCHhHHHHHHHHHH
Q 006442 490 --PNYFEQNQAEALDLDKTVLETVAEAAEDW---R----IDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFCKF 557 (645)
Q Consensus 490 --~~~~~q~~~~~l~~~~tv~e~v~~~~~~~---~----~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~lAra 557 (645)
.+|++|+ ..+.. .|+.+|+....... . ...+...++.+++.. +..++++.+|||||||||+||||
T Consensus 83 ~~i~~~~q~--~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 159 (249)
T PRK14253 83 IKVGMVFQK--PNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIART 159 (249)
T ss_pred hheeEEecC--CCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHH
Confidence 1244443 23443 79999997643211 1 123556777777642 34678899999999999999999
Q ss_pred HccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 558 l~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
|+.+|+||||||||++||+.++..+.++|++. +.|||+||||++++..+|||+++|++|++.. .++.+++.
T Consensus 160 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 232 (249)
T PRK14253 160 IAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVE-HDDTQVIF 232 (249)
T ss_pred HHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 99999999999999999999999999999876 3599999999999999999999999999985 46666554
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=317.15 Aligned_cols=200 Identities=27% Similarity=0.406 Sum_probs=157.1
Q ss_pred EEEEeEEEEeCC--eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceEEE
Q 006442 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (645)
Q Consensus 98 i~i~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i~~ 165 (645)
|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.. ..++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI 82 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence 899999999974 469999999999999999999999999999999999999999999988642 25999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchh
Q 006442 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (645)
Q Consensus 166 v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (645)
++|++.++ ..|++||+.. +.. .. .+++...++ . . .+...+..+ .
T Consensus 83 ~~q~~~l~-~~tv~enl~~-~~~-~~----~~~~~~~~~--------------~----------~---~l~~~~~~l--~ 126 (221)
T cd03244 83 IPQDPVLF-SGTIRSNLDP-FGE-YS----DEELWQALE--------------R----------V---GLKEFVESL--P 126 (221)
T ss_pred ECCCCccc-cchHHHHhCc-CCC-CC----HHHHHHHHH--------------H----------h---CcHHHHHhc--c
Confidence 99999864 4699999842 100 00 000000000 0 0 111112222 1
Q ss_pred cCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhc
Q 006442 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLC 323 (645)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~ 323 (645)
.|+.. ..++.+.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||++||+++++.. |
T Consensus 127 ~~l~~-~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~ 204 (221)
T cd03244 127 GGLDT-VVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-S 204 (221)
T ss_pred ccccc-ccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-C
Confidence 23332 34567899999999999999999999999999999999999999999998854 46899999999999976 9
Q ss_pred CeEEEEcCceeE
Q 006442 324 TKIVETEMGVSR 335 (645)
Q Consensus 324 d~i~~l~~G~~~ 335 (645)
|+++++++|++.
T Consensus 205 d~i~~l~~g~~~ 216 (221)
T cd03244 205 DRILVLDKGRVV 216 (221)
T ss_pred CEEEEEECCeEE
Confidence 999999999874
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=325.60 Aligned_cols=209 Identities=22% Similarity=0.367 Sum_probs=158.2
Q ss_pred EEEEeEEEEeC--CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceEEE
Q 006442 98 VKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (645)
Q Consensus 98 i~i~nls~~y~--~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i~~ 165 (645)
|+++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|+|.++|.+ ..|+|
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGV 81 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEE
Confidence 89999999994 4679999999999999999999999999999999999998 78999998743 25999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchh
Q 006442 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (645)
Q Consensus 166 v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (645)
++|++.+++ .|+++|+.. +.. .. .+++.+.++. + .+...+......
T Consensus 82 v~q~~~lf~-~tv~~nl~~-~~~-~~----~~~~~~~l~~------------------------~---gL~~~~~~~p~~ 127 (275)
T cd03289 82 IPQKVFIFS-GTFRKNLDP-YGK-WS----DEEIWKVAEE------------------------V---GLKSVIEQFPGQ 127 (275)
T ss_pred ECCCcccch-hhHHHHhhh-ccC-CC----HHHHHHHHHH------------------------c---CCHHHHHhCccc
Confidence 999998864 699999841 110 00 0011111110 0 011111111111
Q ss_pred cCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhc
Q 006442 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLC 323 (645)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~ 323 (645)
++. ...+ ....||||||||++|||||+.+|+||||||||++||+.+...+.+.|++ .++|||+|||+++++.. |
T Consensus 128 l~~--~~~~-~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~-~ 203 (275)
T cd03289 128 LDF--VLVD-GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-C 203 (275)
T ss_pred ccc--eecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh-C
Confidence 111 1111 2456999999999999999999999999999999999999999988863 47999999999999976 9
Q ss_pred CeEEEEcCceeEEeccChHHHHH
Q 006442 324 TKIVETEMGVSRTYEGNYSQYVL 346 (645)
Q Consensus 324 d~i~~l~~G~~~~~~g~~~~~~~ 346 (645)
|+|++|++|++. +.|...+.+.
T Consensus 204 dri~vl~~G~i~-~~g~~~~l~~ 225 (275)
T cd03289 204 QRFLVIEENKVR-QYDSIQKLLN 225 (275)
T ss_pred CEEEEecCCeEe-ecCCHHHHhh
Confidence 999999999984 5566555443
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-38 Score=321.56 Aligned_cols=203 Identities=25% Similarity=0.373 Sum_probs=169.5
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC-----eeEEEECceecc---------
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-----GGEVLLGEHNVL--------- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~-----~G~i~~~g~~~~--------- 489 (645)
+|+++|+++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.
T Consensus 7 ~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~ 86 (261)
T PRK14258 7 AIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRL 86 (261)
T ss_pred eEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHh
Confidence 699999999998878999999999999999999999999999999999999985 899999997652
Q ss_pred ---cchhccchhhcCCCCCCHHHHHHhhhcc------cc-HHHHHHHHhhcCCCh---hhhccCcCcCCHhHHHHHHHHH
Q 006442 490 ---PNYFEQNQAEALDLDKTVLETVAEAAED------WR-IDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFCK 556 (645)
Q Consensus 490 ---~~~~~q~~~~~l~~~~tv~e~v~~~~~~------~~-~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~lAr 556 (645)
.+|++|+ ..+.. .|+.+|+...... .. ...+..+++.+++.. +..++++.+||||||||++|||
T Consensus 87 ~~~i~~~~q~--~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar 163 (261)
T PRK14258 87 RRQVSMVHPK--PNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIAR 163 (261)
T ss_pred hccEEEEecC--CccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHH
Confidence 1123333 23444 8999999754211 11 234667888888732 3568889999999999999999
Q ss_pred HHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeC-----CeEEeeCCChhH
Q 006442 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKG-----SNLQDYAGDYNQ 627 (645)
Q Consensus 557 al~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~-----g~i~~~~~~~~~ 627 (645)
||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++.++||||++|++ |+++. .++.++
T Consensus 164 al~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~-~~~~~~ 242 (261)
T PRK14258 164 ALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE-FGLTKK 242 (261)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE-eCCHHH
Confidence 999999999999999999999999999998763 56999999999999999999999999 99985 467666
Q ss_pred HHH
Q 006442 628 VQS 630 (645)
Q Consensus 628 ~~~ 630 (645)
+.+
T Consensus 243 ~~~ 245 (261)
T PRK14258 243 IFN 245 (261)
T ss_pred HHh
Confidence 543
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=341.60 Aligned_cols=201 Identities=30% Similarity=0.511 Sum_probs=173.1
Q ss_pred cEEEEEeeeeeeCCe-eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------cc
Q 006442 423 SVVTIKNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PN 491 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~-~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~ 491 (645)
..++++|+++.|++. ++++++||++++|+++||+|+||||||||+++|+|+++|++|+|.++|.+.. ..
T Consensus 319 ~ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~ 398 (559)
T COG4988 319 IEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS 398 (559)
T ss_pred ceeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHee
Confidence 345566999999854 8999999999999999999999999999999999999999999999997652 23
Q ss_pred hhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhcc----------CcCcCCHhHHHHHHHHHHHccC
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDR----------KVSLLSGGEKARLAFCKFMVKP 561 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqrv~lAral~~~ 561 (645)
|++|+ ...+..|++||+..+....+++++.+++++.++. +..+. ....|||||+|||+||||++++
T Consensus 399 ~v~Q~---p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~-~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~ 474 (559)
T COG4988 399 WVSQN---PYLFAGTIRENILLARPDASDEEIIAALDQAGLL-EFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSP 474 (559)
T ss_pred eeCCC---CccccccHHHHhhccCCcCCHHHHHHHHHHhcHH-HhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCC
Confidence 44544 2446889999999998877888888888888874 33322 2345999999999999999999
Q ss_pred CCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 562 STLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 562 p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
++++|+||||+|||.++++.+.+.|.+. .+|||+||||+..+.+ +|+|++|++|++++ .|.+++..
T Consensus 475 ~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~-~D~I~vld~G~l~~-~g~~~~L~ 542 (559)
T COG4988 475 ASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAAD-ADRIVVLDNGRLVE-QGTHEELS 542 (559)
T ss_pred CCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhc-CCEEEEecCCceec-cCCHHHHh
Confidence 9999999999999999999999999876 4699999999999987 99999999999985 67777764
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=368.64 Aligned_cols=212 Identities=24% Similarity=0.404 Sum_probs=168.2
Q ss_pred ccEEEEeEEEEeCC--eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceE
Q 006442 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (645)
Q Consensus 96 ~~i~i~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i 163 (645)
..|+++|++|+|++ +++|+|+||+|++|+.++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|
T Consensus 476 ~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 555 (710)
T TIGR03796 476 GYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSV 555 (710)
T ss_pred CeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhe
Confidence 35999999999974 569999999999999999999999999999999999999999999998754 369
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhc
Q 006442 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (645)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (645)
+||+|++++ ++.|++||+...-.+ .. .+++.++++.+ .+.+.+.++
T Consensus 556 ~~v~Q~~~l-f~gTi~eNi~l~~~~-~~----~~~i~~al~~~---------------------------~l~~~i~~l- 601 (710)
T TIGR03796 556 AMVDQDIFL-FEGTVRDNLTLWDPT-IP----DADLVRACKDA---------------------------AIHDVITSR- 601 (710)
T ss_pred eEEecCChh-hhccHHHHhhCCCCC-CC----HHHHHHHHHHh---------------------------CCHHHHHhC-
Confidence 999999987 578999999632110 00 01122222211 111112221
Q ss_pred hhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhc
Q 006442 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323 (645)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~ 323 (645)
..|+.+...+ ...+||||||||++|||||+++|+|||||||||+||+.+.+.+.+.|++.++|+|+|||+++.+.. |
T Consensus 602 -p~gl~t~i~e-~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~-~ 678 (710)
T TIGR03796 602 -PGGYDAELAE-GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRD-C 678 (710)
T ss_pred -cCcccceecc-CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-C
Confidence 1144443333 368899999999999999999999999999999999999999999998889999999999999876 9
Q ss_pred CeEEEEcCceeEEeccChHHHH
Q 006442 324 TKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 324 d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
|+|+++++|++. ..|++++.+
T Consensus 679 D~Iivl~~G~i~-~~G~~~~Ll 699 (710)
T TIGR03796 679 DEIIVLERGKVV-QRGTHEELW 699 (710)
T ss_pred CEEEEEeCCEEE-EecCHHHHH
Confidence 999999999984 567766543
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=319.23 Aligned_cols=206 Identities=25% Similarity=0.385 Sum_probs=159.5
Q ss_pred EEEEeEEEEeC-CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceEEEE
Q 006442 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (645)
Q Consensus 98 i~i~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i~~v 166 (645)
|+++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 47899999996 4679999999999999999999999999999999999999999999998743 249999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhc
Q 006442 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (645)
Q Consensus 167 ~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (645)
+|++.++ ..|+.+|+....... .. ..+...+. . . .+.+.+..+
T Consensus 81 ~q~~~~~-~~tv~~nl~~~~~~~-~~----~~~~~~~~------------------------~---~----~l~~~~~~l 123 (236)
T cd03253 81 PQDTVLF-NDTIGYNIRYGRPDA-TD----EEVIEAAK------------------------A---A----QIHDKIMRF 123 (236)
T ss_pred CCCChhh-cchHHHHHhhcCCCC-CH----HHHHHHHH------------------------H---c----CcHHHHHhc
Confidence 9999875 579999985321100 00 00000000 0 0 011122222
Q ss_pred --CCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhh
Q 006442 247 --GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQL 322 (645)
Q Consensus 247 --gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~ 322 (645)
|+. ...++.+.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++ .|.|||++||+.+++..
T Consensus 124 ~~~~~-~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~- 201 (236)
T cd03253 124 PDGYD-TIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN- 201 (236)
T ss_pred ccccc-chhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh-
Confidence 332 234666899999999999999999999999999999999999999999887743 28899999999999975
Q ss_pred cCeEEEEcCceeEEeccChHH
Q 006442 323 CTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 323 ~d~i~~l~~G~~~~~~g~~~~ 343 (645)
||+++++++|++. ..|...+
T Consensus 202 ~d~~~~l~~g~i~-~~~~~~~ 221 (236)
T cd03253 202 ADKIIVLKDGRIV-ERGTHEE 221 (236)
T ss_pred CCEEEEEECCEEE-eeCCHHH
Confidence 9999999999874 4555443
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=304.75 Aligned_cols=157 Identities=30% Similarity=0.542 Sum_probs=139.8
Q ss_pred EEEEeEEEEeCC--eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceEEE
Q 006442 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (645)
Q Consensus 98 i~i~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i~~ 165 (645)
|+++|++++|++ .++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 478999999975 469999999999999999999999999999999999999999999998642 35899
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchh
Q 006442 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (645)
Q Consensus 166 v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (645)
++|++.+++ .|++||
T Consensus 81 ~~q~~~~~~-~tv~~~---------------------------------------------------------------- 95 (173)
T cd03246 81 LPQDDELFS-GSIAEN---------------------------------------------------------------- 95 (173)
T ss_pred ECCCCcccc-CcHHHH----------------------------------------------------------------
Confidence 999987644 366543
Q ss_pred cCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhh
Q 006442 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQL 322 (645)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~ 322 (645)
+ ||||||||++|||||+.+|++|||||||++||+.++.++.++|+ +.|.|||++|||++++. .
T Consensus 96 -----------l--LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~ 161 (173)
T cd03246 96 -----------I--LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-S 161 (173)
T ss_pred -----------C--cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-h
Confidence 0 89999999999999999999999999999999999999988874 35889999999999985 7
Q ss_pred cCeEEEEcCce
Q 006442 323 CTKIVETEMGV 333 (645)
Q Consensus 323 ~d~i~~l~~G~ 333 (645)
||+++++++|+
T Consensus 162 ~d~v~~l~~G~ 172 (173)
T cd03246 162 ADRILVLEDGR 172 (173)
T ss_pred CCEEEEEECCC
Confidence 99999999885
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=317.41 Aligned_cols=200 Identities=26% Similarity=0.457 Sum_probs=164.1
Q ss_pred EEEEeeeeeeCCe--eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------cch
Q 006442 425 VTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNY 492 (645)
Q Consensus 425 i~~~~v~~~y~~~--~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~ 492 (645)
|+++|+++.|+++ .+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999765 7999999999999999999999999999999999999999999999997652 234
Q ss_pred hccchhhcCCCCCCHHHHHHhhhccccHHH---------HHHHHhhc--CCChhhhccCcCcCCHhHHHHHHHHHHHccC
Q 006442 493 FEQNQAEALDLDKTVLETVAEAAEDWRIDD---------IKGLLGRC--NFKADMLDRKVSLLSGGEKARLAFCKFMVKP 561 (645)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~---------~~~~L~~~--~l~~~~~~~~~~~LSgGqkqrv~lAral~~~ 561 (645)
++|+. .+. ..|+.+|+........... +.+.++.+ ++. ...++++.+||||||||++|||||+.+
T Consensus 81 ~~q~~--~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~ 156 (234)
T cd03251 81 VSQDV--FLF-NDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYD-TVIGERGVKLSGGQRQRIAIARALLKD 156 (234)
T ss_pred eCCCC--eec-cccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcc-eeeccCCCcCCHHHHHHHHHHHHHhcC
Confidence 44442 333 4799999976532222222 23334444 443 345678899999999999999999999
Q ss_pred CCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 562 STLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 562 p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|++|||||||++||+.+++.+.+.|.+. +.|||+||||++++.. ||++++|++|++.. .++.+++..
T Consensus 157 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~-~~~~~~~~~ 225 (234)
T cd03251 157 PPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGKIVE-RGTHEELLA 225 (234)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEecCCeEee-eCCHHHHHH
Confidence 9999999999999999999999999875 4599999999999976 99999999999985 577776643
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=307.48 Aligned_cols=161 Identities=26% Similarity=0.430 Sum_probs=144.7
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----------ceEEE
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAF 165 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-----------~~i~~ 165 (645)
+|+++|++++| +|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 4 ~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (182)
T cd03215 4 VLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAY 79 (182)
T ss_pred EEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEE
Confidence 59999999999 8999999999999999999999999999999999999999999998632 25999
Q ss_pred EeccC---ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhh
Q 006442 166 LSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (645)
Q Consensus 166 v~Q~~---~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (645)
++|++ .+++..|++||+...
T Consensus 80 ~~q~~~~~~~~~~~t~~e~l~~~--------------------------------------------------------- 102 (182)
T cd03215 80 VPEDRKREGLVLDLSVAENIALS--------------------------------------------------------- 102 (182)
T ss_pred ecCCcccCcccCCCcHHHHHHHH---------------------------------------------------------
Confidence 99985 456678999886310
Q ss_pred chhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHH
Q 006442 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFL 319 (645)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l 319 (645)
. .||||||||++|||||+.+|++|||||||++||+.+++.+.++|++ .+.|+|++||+++++
T Consensus 103 --------~-------~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 167 (182)
T cd03215 103 --------S-------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDEL 167 (182)
T ss_pred --------h-------hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 0 0999999999999999999999999999999999999999887753 479999999999999
Q ss_pred HhhcCeEEEEcCce
Q 006442 320 DQLCTKIVETEMGV 333 (645)
Q Consensus 320 ~~~~d~i~~l~~G~ 333 (645)
.++||+++++++|+
T Consensus 168 ~~~~d~v~~l~~G~ 181 (182)
T cd03215 168 LGLCDRILVMYEGR 181 (182)
T ss_pred HHhCCEEEEecCCc
Confidence 99999999999885
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=308.27 Aligned_cols=205 Identities=25% Similarity=0.406 Sum_probs=181.9
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceec------ccchhccch
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------LPNYFEQNQ 497 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~------~~~~~~q~~ 497 (645)
.+++++|+++|+++.+++|+||++++|++.|++|+||+||||.+++|+|+++|++|+|.|+|.++ +++|.+..
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEE- 80 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEE- 80 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhh-
Confidence 48999999999999999999999999999999999999999999999999999999999999876 35677643
Q ss_pred hhcCCCCCCHHHHHHhhhcc--c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCC
Q 006442 498 AEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571 (645)
Q Consensus 498 ~~~l~~~~tv~e~v~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt 571 (645)
..+.+.+||.|.+.+.+.. . ...++..+|+++++. ....+++.+||-|++|++.+..+++++|+++|||||+
T Consensus 81 -RGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~-~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPF 158 (300)
T COG4152 81 -RGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIV-GKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPF 158 (300)
T ss_pred -hccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcccc-ccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCc
Confidence 4688999999998875432 1 234577899999995 5678999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHHH
Q 006442 572 NHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSLW 632 (645)
Q Consensus 572 ~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~~ 632 (645)
|||||.+.+.|.+++.++ +.|||++||.|+-++++||+++.|++|+.+. .|+.+...+.+
T Consensus 159 SGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~-~G~v~~ir~~~ 221 (300)
T COG4152 159 SGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVL-YGTVEDIRRSF 221 (300)
T ss_pred cCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEE-eccHHHHHHhc
Confidence 999999999999999765 5699999999999999999999999999885 58877765533
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=317.66 Aligned_cols=204 Identities=24% Similarity=0.333 Sum_probs=165.1
Q ss_pred EEEEeEEEEeCC--------------------eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEc
Q 006442 98 VKLENISKSYKG--------------------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (645)
Q Consensus 98 i~i~nls~~y~~--------------------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~ 157 (645)
|+++|+++.|.. +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~ 84 (264)
T PRK13546 5 VNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRN 84 (264)
T ss_pred EEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEC
Confidence 778888877732 248999999999999999999999999999999999999999999987
Q ss_pred CCCceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHH
Q 006442 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (645)
Q Consensus 158 ~~~~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (645)
+ .+++++|.+.+....|+.+|+...... . ..+......
T Consensus 85 g---~~~~~~~~~~~~~~~tv~enl~~~~~~---------------~------------------------~~~~~~~~~ 122 (264)
T PRK13546 85 G---EVSVIAISAGLSGQLTGIENIEFKMLC---------------M------------------------GFKRKEIKA 122 (264)
T ss_pred C---EEeEEecccCCCCCCcHHHHHHHHHHH---------------c------------------------CCCHHHHHH
Confidence 5 367888988777778999997521100 0 000111122
Q ss_pred HHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEec
Q 006442 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISH 314 (645)
Q Consensus 238 ~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsH 314 (645)
.+..++..+++. +..++++.+|||||+||++|||||+.+|++|||||||+|||+.+++.+.+.|. +.|+|||++||
T Consensus 123 ~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH 201 (264)
T PRK13546 123 MTPKIIEFSELG-EFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSH 201 (264)
T ss_pred HHHHHHHHcCCc-hhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 334555666765 56778899999999999999999999999999999999999999998888764 45899999999
Q ss_pred CHHHHHhhcCeEEEEcCceeEEeccChHHHH
Q 006442 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 315 d~~~l~~~~d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
+++++..+||+|+++++|++. ..|+.+++.
T Consensus 202 ~~~~i~~~~d~i~~l~~G~i~-~~g~~~~~~ 231 (264)
T PRK13546 202 NLGQVRQFCTKIAWIEGGKLK-DYGELDDVL 231 (264)
T ss_pred CHHHHHHHcCEEEEEECCEEE-EeCCHHHHH
Confidence 999999999999999999984 456655543
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=308.60 Aligned_cols=170 Identities=29% Similarity=0.387 Sum_probs=151.2
Q ss_pred cEEEEeEEEEeCC------eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCC--CCCccEEEEcCCC-------c
Q 006442 97 GVKLENISKSYKG------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKAKSN-------M 161 (645)
Q Consensus 97 ~i~i~nls~~y~~------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~--~p~~G~I~~~~~~-------~ 161 (645)
.|+++|++|+|++ .++|+++||+|++|++++|+||||||||||+++|+|++ +|++|+|.++|.. .
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 3899999999975 67999999999999999999999999999999999999 9999999998653 3
Q ss_pred eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHh
Q 006442 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (645)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (645)
.++|++|++.+++..|+.||+.... .
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~------------------------------------------------------~ 108 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAA------------------------------------------------------K 108 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHH------------------------------------------------------H
Confidence 5999999998877889999874100 0
Q ss_pred hchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHH-
Q 006442 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA- 317 (645)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~- 317 (645)
..+||||||||++|||||+.+|++|||||||++||+.+++.+.++|++ .++|||++||+++
T Consensus 109 ---------------~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 173 (194)
T cd03213 109 ---------------LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSS 173 (194)
T ss_pred ---------------hccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchH
Confidence 017999999999999999999999999999999999999999887743 4899999999996
Q ss_pred HHHhhcCeEEEEcCceeE
Q 006442 318 FLDQLCTKIVETEMGVSR 335 (645)
Q Consensus 318 ~l~~~~d~i~~l~~G~~~ 335 (645)
.+.++||+++++++|++.
T Consensus 174 ~~~~~~d~v~~l~~G~i~ 191 (194)
T cd03213 174 EIFELFDKLLLLSQGRVI 191 (194)
T ss_pred HHHHhcCEEEEEeCCEEE
Confidence 788999999999999874
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=326.97 Aligned_cols=213 Identities=23% Similarity=0.385 Sum_probs=175.6
Q ss_pred ccCCCCCCCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCeeEEEECceec
Q 006442 414 FPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNV 488 (645)
Q Consensus 414 ~p~~~~~~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~~ 488 (645)
|..+....+.+|+++|++++|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.++|.++
T Consensus 35 ~~~~~~~~~~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i 114 (305)
T PRK14264 35 WTDYEFDGDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDI 114 (305)
T ss_pred ccccccCCCceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence 33444456778999999999998899999999999999999999999999999999999986 6899999999765
Q ss_pred c------------cchhccchhhcCCCCCCHHHHHHhhhcc-------------------ccHHHHHHHHhhcCCC---h
Q 006442 489 L------------PNYFEQNQAEALDLDKTVLETVAEAAED-------------------WRIDDIKGLLGRCNFK---A 534 (645)
Q Consensus 489 ~------------~~~~~q~~~~~l~~~~tv~e~v~~~~~~-------------------~~~~~~~~~L~~~~l~---~ 534 (645)
. .+|++|+. .+. ..|+.+|+...... .....+..+++.+++. .
T Consensus 115 ~~~~~~~~~~~~~i~~v~q~~--~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 191 (305)
T PRK14264 115 YQDGVNLVELRKRVGMVFQSP--NPF-PKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVN 191 (305)
T ss_pred ccccccHHHHhhceEEEccCC--ccc-cccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhh
Confidence 2 13444442 333 35999999864210 0123467788888874 2
Q ss_pred hhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEE-E
Q 006442 535 DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRV-V 611 (645)
Q Consensus 535 ~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v-~ 611 (645)
+..++++.+|||||||||+|||||+++|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||++ +
T Consensus 192 ~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~ 271 (305)
T PRK14264 192 DRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAV 271 (305)
T ss_pred HHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEE
Confidence 3457889999999999999999999999999999999999999999999999876 459999999999999999997 5
Q ss_pred EEeCCeEEeeCCChhHHHH
Q 006442 612 EVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 612 ~l~~g~i~~~~~~~~~~~~ 630 (645)
+|++|+++. .++.+++.+
T Consensus 272 ~l~~G~i~~-~g~~~~~~~ 289 (305)
T PRK14264 272 FLTGGELVE-YDDTDKIFE 289 (305)
T ss_pred EecCCEEEE-eCCHHHHHh
Confidence 679999986 477766643
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=312.93 Aligned_cols=183 Identities=34% Similarity=0.483 Sum_probs=157.1
Q ss_pred EEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------------cch
Q 006442 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------------PNY 492 (645)
Q Consensus 427 ~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------------~~~ 492 (645)
++|+++.|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 80 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGY 80 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeE
Confidence 478999998888999999999999999999999999999999999999999999999998742 123
Q ss_pred hccchhhcCCCCCCHHHHHHhhhcc------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEE
Q 006442 493 FEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (645)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~v~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 566 (645)
+.|. ..+++..|+.+|+...... ...+++.++++.+++ .+..++++.+||||||||++|||||+.+|++||
T Consensus 81 ~~q~--~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~lS~G~~qr~~laral~~~p~lll 157 (206)
T TIGR03608 81 LFQN--FALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGL-NLKLKQKIYELSGGEQQRVALARAILKDPPLIL 157 (206)
T ss_pred Eecc--hhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCc-hhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 3333 3455678999998764321 123457789999999 467789999999999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEE
Q 006442 567 LDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEV 613 (645)
Q Consensus 567 LDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l 613 (645)
|||||++||+.+++.+.+.|+++ +.|||+||||++++ .+||++++|
T Consensus 158 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~i~~l 206 (206)
T TIGR03608 158 ADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA-KQADRVIEL 206 (206)
T ss_pred EeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-hhcCEEEeC
Confidence 99999999999999999999865 46999999999977 579999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=366.30 Aligned_cols=210 Identities=24% Similarity=0.437 Sum_probs=167.7
Q ss_pred cEEEEeEEEEeCC--eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc----------eEE
Q 006442 97 GVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIA 164 (645)
Q Consensus 97 ~i~i~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~----------~i~ 164 (645)
.|+++|++|+|++ +++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.+. .||
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 530 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLG 530 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccE
Confidence 5999999999953 5699999999999999999999999999999999999999999999998542 599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
||+|++.+ ++.|++||+..+-. .. .+++.++++.+ .+.+.+..+
T Consensus 531 ~v~Q~~~l-f~gTI~eNi~~~~~--~~----~e~i~~al~~a---------------------------~l~~~i~~l-- 574 (686)
T TIGR03797 531 VVLQNGRL-MSGSIFENIAGGAP--LT----LDEAWEAARMA---------------------------GLAEDIRAM-- 574 (686)
T ss_pred EEccCCcc-CcccHHHHHhcCCC--CC----HHHHHHHHHHc---------------------------CcHHHHHhc--
Confidence 99999987 67899999964311 00 01122222211 112222222
Q ss_pred hcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcC
Q 006442 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCT 324 (645)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d 324 (645)
..|+.+..++ ...+||||||||++|||||+++|+|||||||||+||+.+.+.+.+.|++.++|+|+|||+++.+.. ||
T Consensus 575 p~G~dt~ige-~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~-~D 652 (686)
T TIGR03797 575 PMGMHTVISE-GGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRN-AD 652 (686)
T ss_pred cccccccccC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHc-CC
Confidence 1244433333 357899999999999999999999999999999999999999999998778999999999999976 99
Q ss_pred eEEEEcCceeEEeccChHHHH
Q 006442 325 KIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 325 ~i~~l~~G~~~~~~g~~~~~~ 345 (645)
+|+++++|++. ..|++++..
T Consensus 653 ~Iivl~~G~iv-~~G~~~~Ll 672 (686)
T TIGR03797 653 RIYVLDAGRVV-QQGTYDELM 672 (686)
T ss_pred EEEEEECCEEE-EECCHHHHH
Confidence 99999999984 567766543
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=337.46 Aligned_cols=197 Identities=28% Similarity=0.332 Sum_probs=168.3
Q ss_pred eeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECce----ecc--------------c
Q 006442 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH----NVL--------------P 490 (645)
Q Consensus 429 ~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~----~~~--------------~ 490 (645)
++.++|+...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++. .
T Consensus 29 ~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i 108 (382)
T TIGR03415 29 EILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRV 108 (382)
T ss_pred HHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCE
Confidence 4456777788999999999999999999999999999999999999999999999985 221 2
Q ss_pred chhccchhhcCCCCCCHHHHHHhhhcc------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCe
Q 006442 491 NYFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (645)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~v~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 564 (645)
+|++|+ ..+++..|+.+|+.+.... .....+.++++.+|+. +..++++.+|||||||||+|||||+.+|+|
T Consensus 109 ~~vfQ~--~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~-~~~~~~~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 109 SMVFQK--FALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLA-QWADKKPGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred EEEECC--CcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 344443 4567789999999875321 1124577899999995 678999999999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 565 LVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 565 LlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
|||||||++||+.++..+++.|.+. +.|||+||||++++.++||||++|++|+++. .|..+++.
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~-~g~~~ei~ 253 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQ-HGTPEEIV 253 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecCHHHHh
Confidence 9999999999999999999988754 5699999999999999999999999999986 46666554
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=307.30 Aligned_cols=170 Identities=24% Similarity=0.332 Sum_probs=149.8
Q ss_pred cEEEEeEEEEeCC----eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCC--CCCccEEEEcCCC------ceEE
Q 006442 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKAKSN------MKIA 164 (645)
Q Consensus 97 ~i~i~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~--~p~~G~I~~~~~~------~~i~ 164 (645)
.|+++|+++.|++ +++|+++||+|++|++++|+||||||||||+++|+|++ +|++|+|.+++.+ ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 5899999999975 67999999999999999999999999999999999986 4899999998754 3699
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
|++|++.+++..|++||+.... .+
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~-------------------------------------------------------~~- 106 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSA-------------------------------------------------------LL- 106 (192)
T ss_pred EecccCccccCCcHHHHHHHHH-------------------------------------------------------HH-
Confidence 9999988877889999974110 00
Q ss_pred hcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHH-HHH
Q 006442 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA-FLD 320 (645)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~-~l~ 320 (645)
.+||||||||++|||||+.+|++|||||||++||+.++.++.+.|++ .++|||++||+++ .+.
T Consensus 107 -------------~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~ 173 (192)
T cd03232 107 -------------RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIF 173 (192)
T ss_pred -------------hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHH
Confidence 08999999999999999999999999999999999999999988753 4899999999998 478
Q ss_pred hhcCeEEEEcC-ceeE
Q 006442 321 QLCTKIVETEM-GVSR 335 (645)
Q Consensus 321 ~~~d~i~~l~~-G~~~ 335 (645)
.+||+++++++ |++.
T Consensus 174 ~~~d~i~~l~~~g~i~ 189 (192)
T cd03232 174 EKFDRLLLLKRGGKTV 189 (192)
T ss_pred hhCCEEEEEcCCCeEE
Confidence 89999999998 8863
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=319.94 Aligned_cols=202 Identities=24% Similarity=0.311 Sum_probs=169.2
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CeeEEEECceecc---------
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL--------- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p-----~~G~i~~~g~~~~--------- 489 (645)
+|+++|+++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 7 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 86 (259)
T PRK14260 7 AIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRL 86 (259)
T ss_pred eEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhh
Confidence 69999999999888899999999999999999999999999999999999985 4899999997652
Q ss_pred ---cchhccchhhcCCCCCCHHHHHHhhhcc------cc-HHHHHHHHhhcCCC---hhhhccCcCcCCHhHHHHHHHHH
Q 006442 490 ---PNYFEQNQAEALDLDKTVLETVAEAAED------WR-IDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAFCK 556 (645)
Q Consensus 490 ---~~~~~q~~~~~l~~~~tv~e~v~~~~~~------~~-~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqkqrv~lAr 556 (645)
.+|++|+ ..++. .|+.+|+...... .. ...+.++++.+++. .+..++.+.+|||||||||+|||
T Consensus 87 ~~~i~~v~q~--~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 163 (259)
T PRK14260 87 RRQIGMVFQR--PNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIAR 163 (259)
T ss_pred hhheEEEecc--cccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHH
Confidence 1234443 23444 8999999764321 11 23456778888873 24567889999999999999999
Q ss_pred HHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEe-----CCeEEeeCCChhHHH
Q 006442 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVK-----GSNLQDYAGDYNQVQ 629 (645)
Q Consensus 557 al~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~-----~g~i~~~~~~~~~~~ 629 (645)
||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++.++|||+++|+ +|+++. .|+.+++.
T Consensus 164 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~-~~~~~~~~ 242 (259)
T PRK14260 164 ALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVE-FGVTTQIF 242 (259)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEE-eCCHHHHh
Confidence 999999999999999999999999999999875 3699999999999999999999997 499985 46766654
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=311.20 Aligned_cols=183 Identities=25% Similarity=0.388 Sum_probs=153.9
Q ss_pred cEEEEeEEEEeCC--eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceEE
Q 006442 97 GVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIA 164 (645)
Q Consensus 97 ~i~i~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i~ 164 (645)
.|+++|++++|++ .++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..|+
T Consensus 6 ~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 85 (207)
T cd03369 6 EIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLT 85 (207)
T ss_pred eEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 4999999999975 469999999999999999999999999999999999999999999998742 3599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
|++|++.++. .|+++|+... .. .. ...+.+.++
T Consensus 86 ~v~q~~~~~~-~tv~~~l~~~-~~-----------------------------------------~~----~~~~~~~l~ 118 (207)
T cd03369 86 IIPQDPTLFS-GTIRSNLDPF-DE-----------------------------------------YS----DEEIYGALR 118 (207)
T ss_pred EEecCCcccC-ccHHHHhccc-CC-----------------------------------------CC----HHHHHHHhh
Confidence 9999997754 6999997411 00 00 000111121
Q ss_pred hcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhh
Q 006442 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQL 322 (645)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~ 322 (645)
.++.+.+|||||+||++|||||+.+|++|||||||++||+.+++.+.++|++ .+.|+|++||+.+++..
T Consensus 119 --------~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~- 189 (207)
T cd03369 119 --------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID- 189 (207)
T ss_pred --------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-
Confidence 2456899999999999999999999999999999999999999999988854 37899999999999976
Q ss_pred cCeEEEEcCceeE
Q 006442 323 CTKIVETEMGVSR 335 (645)
Q Consensus 323 ~d~i~~l~~G~~~ 335 (645)
||+++++++|++.
T Consensus 190 ~d~v~~l~~g~i~ 202 (207)
T cd03369 190 YDKILVMDAGEVK 202 (207)
T ss_pred CCEEEEEECCEEE
Confidence 9999999999874
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-38 Score=339.01 Aligned_cols=209 Identities=29% Similarity=0.427 Sum_probs=163.8
Q ss_pred EEEEeEEEEeCCe-eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceEEEE
Q 006442 98 VKLENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (645)
Q Consensus 98 i~i~nls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i~~v 166 (645)
++.+|+++.|++. ++++|+||++++|+.++|||+||||||||+++|+|+.+|++|+|.++|.+ .+++||
T Consensus 321 i~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v 400 (559)
T COG4988 321 ISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWV 400 (559)
T ss_pred eeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeee
Confidence 5556999999765 89999999999999999999999999999999999999999999999764 259999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchh-
Q 006442 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE- 245 (645)
Q Consensus 167 ~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~- 245 (645)
+|+|.+ +..|++||+..+-... . .+.+.++++ +. -+.+.++.
T Consensus 401 ~Q~p~l-f~gTireNi~l~~~~~-s----~e~i~~al~--------------~a-----------------~l~~~v~~p 443 (559)
T COG4988 401 SQNPYL-FAGTIRENILLARPDA-S----DEEIIAALD--------------QA-----------------GLLEFVPKP 443 (559)
T ss_pred CCCCcc-ccccHHHHhhccCCcC-C----HHHHHHHHH--------------Hh-----------------cHHHhhcCC
Confidence 999987 6789999996432110 0 011111111 11 01111221
Q ss_pred cCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhc
Q 006442 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLC 323 (645)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~ 323 (645)
-|+++..++. ...|||||+|||+|||||+.+++++||||||+|||.++.+.+.+.|.+ +++|||+|||+++.+.+ +
T Consensus 444 ~GLdt~ige~-G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~-~ 521 (559)
T COG4988 444 DGLDTVIGEG-GAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAAD-A 521 (559)
T ss_pred CcccchhccC-CCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhc-C
Confidence 2444333333 678999999999999999999999999999999999999999887743 57999999999999987 8
Q ss_pred CeEEEEcCceeEEeccChHHHHH
Q 006442 324 TKIVETEMGVSRTYEGNYSQYVL 346 (645)
Q Consensus 324 d~i~~l~~G~~~~~~g~~~~~~~ 346 (645)
|+|+++++|++ ...|++++.+.
T Consensus 522 D~I~vld~G~l-~~~g~~~~L~~ 543 (559)
T COG4988 522 DRIVVLDNGRL-VEQGTHEELSE 543 (559)
T ss_pred CEEEEecCCce-eccCCHHHHhh
Confidence 99999999998 45677665443
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=300.11 Aligned_cols=201 Identities=30% Similarity=0.460 Sum_probs=173.6
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc----------chh
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP----------NYF 493 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~----------~~~ 493 (645)
+|+.+|++++..++.+++++||++++||.+||+||||+|||||||.|+|.+.|++|++.++|.++.. ..+
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVl 80 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVL 80 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhc
Confidence 5889999999999999999999999999999999999999999999999999999999999987531 234
Q ss_pred ccchhhcCCCCCCHHHHHHhhhccc------cHHH--HHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHcc-----
Q 006442 494 EQNQAEALDLDKTVLETVAEAAEDW------RIDD--IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK----- 560 (645)
Q Consensus 494 ~q~~~~~l~~~~tv~e~v~~~~~~~------~~~~--~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~----- 560 (645)
+|+ ..+.|..||.|-+.++...+ ..+. +..+|.+.++ ..+..+.+..|||||||||.|||+|++
T Consensus 81 pQ~--s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~-~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v 157 (259)
T COG4559 81 PQN--SSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDL-SGLAGRDYRTLSGGEQQRVQLARVLAQLWPPV 157 (259)
T ss_pred ccC--cccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcCh-hhhhccchhhcCchHHHHHHHHHHHHHccCCC
Confidence 444 45667889999998875322 1222 6788999998 477889999999999999999999986
Q ss_pred -CCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHH
Q 006442 561 -PSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQV 628 (645)
Q Consensus 561 -~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~ 628 (645)
++++|+||||||+||+..+....+..+++ +..|+.|-||++.+..|||||++|.+|+++. .|..++.
T Consensus 158 ~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a-~g~p~~v 228 (259)
T COG4559 158 PSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIA-SGSPQDV 228 (259)
T ss_pred CCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEee-cCCHHHh
Confidence 34699999999999999999999999887 4699999999999999999999999999986 5665554
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=367.30 Aligned_cols=204 Identities=24% Similarity=0.414 Sum_probs=175.9
Q ss_pred CcEEEEEeeeeeeCC--eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------
Q 006442 422 RSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~--~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (645)
...|+++||+|+|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.
T Consensus 475 ~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 554 (710)
T TIGR03796 475 SGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANS 554 (710)
T ss_pred CCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhh
Confidence 346999999999974 57999999999999999999999999999999999999999999999998863
Q ss_pred cchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhh----------hccCcCcCCHhHHHHHHHHHHHc
Q 006442 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM----------LDRKVSLLSGGEKARLAFCKFMV 559 (645)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~----------~~~~~~~LSgGqkqrv~lAral~ 559 (645)
.+|++|+. ..++.|++||+..+......+++.++++..++.... ......+||||||||++||||++
T Consensus 555 i~~v~Q~~---~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall 631 (710)
T TIGR03796 555 VAMVDQDI---FLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALV 631 (710)
T ss_pred eeEEecCC---hhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHh
Confidence 24555542 346789999998765556677788888887764211 12334579999999999999999
Q ss_pred cCCCeEEeeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 560 ~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
++|++||||||||+||.++++.+.+.|.+.+.|+|+|||+++.+.. ||||++|++|++++ .|+++++.+
T Consensus 632 ~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~~-~G~~~~Ll~ 700 (710)
T TIGR03796 632 RNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRD-CDEIIVLERGKVVQ-RGTHEELWA 700 (710)
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEeCCEEEE-ecCHHHHHH
Confidence 9999999999999999999999999999877899999999999976 99999999999985 588888765
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-38 Score=316.50 Aligned_cols=193 Identities=21% Similarity=0.324 Sum_probs=157.4
Q ss_pred eeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCC----CccEEEEcCCC--------ceEEEEeccCc--cCCCCC
Q 006442 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP----DSGNVIKAKSN--------MKIAFLSQEFE--VSMSRT 177 (645)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p----~~G~I~~~~~~--------~~i~~v~Q~~~--~~~~~T 177 (645)
+++|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.+ ..++|++|++. +.+..|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 57899999999999999999999999999999999999 89999998743 36999999985 334579
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCc--ccccc
Q 006442 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA--DDGDR 255 (645)
Q Consensus 178 v~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~--~~~~~ 255 (645)
+.+|+...... . ........+++.++++.+|+.. ...++
T Consensus 81 ~~~~~~~~~~~--------------~-------------------------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 121 (230)
T TIGR02770 81 MGNHAIETLRS--------------L-------------------------GKLSKQARALILEALEAVGLPDPEEVLKK 121 (230)
T ss_pred HHHHHHHHHHH--------------c-------------------------CccHHHHHHHHHHHHHHcCCCchHHHHhC
Confidence 98887421100 0 0000112345667788888862 45788
Q ss_pred cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCeEEEEcC
Q 006442 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETEM 331 (645)
Q Consensus 256 ~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d~i~~l~~ 331 (645)
++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|++ .++|||++||+++++..+||+++++++
T Consensus 122 ~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 201 (230)
T TIGR02770 122 YPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDD 201 (230)
T ss_pred ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 8999999999999999999999999999999999999999999887743 478999999999999999999999999
Q ss_pred ceeEEeccChHHH
Q 006442 332 GVSRTYEGNYSQY 344 (645)
Q Consensus 332 G~~~~~~g~~~~~ 344 (645)
|++. ..|..+++
T Consensus 202 G~i~-~~~~~~~~ 213 (230)
T TIGR02770 202 GRIV-ERGTVKEI 213 (230)
T ss_pred CEEE-EeCCHHHH
Confidence 9974 44554443
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=306.00 Aligned_cols=166 Identities=25% Similarity=0.444 Sum_probs=144.9
Q ss_pred CcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----------c
Q 006442 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------P 490 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~ 490 (645)
+++|+++|++++| +|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 2 ~~~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 2 EPVLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred CcEEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 3579999999999 899999999999999999999999999999999999999999999997652 1
Q ss_pred chhccchh-hcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeC
Q 006442 491 NYFEQNQA-EALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (645)
Q Consensus 491 ~~~~q~~~-~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 569 (645)
+|++|+.. ..+.+..|+.+|+..... ||||||||++||||++.+|++|||||
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~---------------------------LS~G~~qrl~la~al~~~p~llllDE 130 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL---------------------------LSGGNQQKVVLARWLARDPRVLILDE 130 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh---------------------------cCHHHHHHHHHHHHHccCCCEEEECC
Confidence 23344321 235566788888754310 99999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeE
Q 006442 570 PTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNL 618 (645)
Q Consensus 570 Pt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i 618 (645)
||++||+.+++.+.+.|+++ +.|+|++|||++++.++||++++|++|++
T Consensus 131 P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 131 PTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999865 46999999999999999999999999874
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=318.47 Aligned_cols=204 Identities=24% Similarity=0.337 Sum_probs=169.6
Q ss_pred CcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CeeEEEECceecc-------
Q 006442 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL------- 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p-----~~G~i~~~g~~~~------- 489 (645)
.++|+++|++++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 4 ~~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 4 EIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred cceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 3479999999999988999999999999999999999999999999999999763 4899999997752
Q ss_pred -----cchhccchhhcCCCCCCHHHHHHhhhcc---cc----HHHHHHHHhhcCCCh---hhhccCcCcCCHhHHHHHHH
Q 006442 490 -----PNYFEQNQAEALDLDKTVLETVAEAAED---WR----IDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAF 554 (645)
Q Consensus 490 -----~~~~~q~~~~~l~~~~tv~e~v~~~~~~---~~----~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~l 554 (645)
.+|++|+ ..+.. .|+.+|+...... .. ...+.++++.+++.. +..++.+.+||||||||++|
T Consensus 84 ~~~~~i~~~~q~--~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 160 (253)
T PRK14261 84 ALRRKIGMVFQR--PNPFP-KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCI 160 (253)
T ss_pred hhhceEEEEecC--CccCc-ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHH
Confidence 1234443 23433 5999999764321 11 224567778877632 34678999999999999999
Q ss_pred HHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
||||+.+|++|||||||++||+.+++.+.+.|+++ +.|||++|||++++.++||++++|++|++.. .|+.+++.
T Consensus 161 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 236 (253)
T PRK14261 161 ARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIE-FDKTTQIF 236 (253)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEE-cCCHHHHH
Confidence 99999999999999999999999999999999876 3699999999999999999999999999985 46666654
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-38 Score=351.57 Aligned_cols=201 Identities=23% Similarity=0.294 Sum_probs=173.4
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC--CeeEEEECceecc-----------
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP--RGGEVLLGEHNVL----------- 489 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p--~~G~i~~~g~~~~----------- 489 (645)
++|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 4 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (506)
T PRK13549 4 YLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAG 83 (506)
T ss_pred ceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCC
Confidence 479999999999988899999999999999999999999999999999999986 8999999997652
Q ss_pred cchhccchhhcCCCCCCHHHHHHhhhcc-----cc----HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHcc
Q 006442 490 PNYFEQNQAEALDLDKTVLETVAEAAED-----WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560 (645)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~v~~~~~~-----~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~ 560 (645)
.+|++|+ ..+.+..|+.+|+...... .. ...+.++++.+++. +..++++.+|||||||||+|||||+.
T Consensus 84 i~~v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~ 160 (506)
T PRK13549 84 IAIIHQE--LALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLD-INPATPVGNLGLGQQQLVEIAKALNK 160 (506)
T ss_pred eEEEEec--cccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCC-CCcccchhhCCHHHHHHHHHHHHHhc
Confidence 2355554 3456678999999764311 11 23577899999994 56789999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhH
Q 006442 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQ 627 (645)
Q Consensus 561 ~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~ 627 (645)
+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++.. ++.++
T Consensus 161 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~-~~~~~ 229 (506)
T PRK13549 161 QARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGT-RPAAG 229 (506)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeee-ccccc
Confidence 99999999999999999999999999765 46999999999999999999999999999753 44443
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=359.25 Aligned_cols=202 Identities=24% Similarity=0.395 Sum_probs=172.8
Q ss_pred EEEEEeeeeee-CCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------cch
Q 006442 424 VVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNY 492 (645)
Q Consensus 424 ~i~~~~v~~~y-~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~ 492 (645)
-|+++||++.| +++++|+|+||+|++|+++||+|+||||||||+++|+|++ |++|+|.++|.++. .+|
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~ 427 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSW 427 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEE
Confidence 49999999765 5678999999999999999999999999999999999999 99999999998763 245
Q ss_pred hccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChh----------hhccCcCcCCHhHHHHHHHHHHHccCC
Q 006442 493 FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD----------MLDRKVSLLSGGEKARLAFCKFMVKPS 562 (645)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSgGqkqrv~lAral~~~p 562 (645)
++|+. ..++.|++||+..+.+..+.+++.++++.+++... .......+||||||||++||||++++|
T Consensus 428 v~Q~~---~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~ 504 (588)
T PRK11174 428 VGQNP---QLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPC 504 (588)
T ss_pred ecCCC---cCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCC
Confidence 56542 34688999999988666677788888887776321 122334579999999999999999999
Q ss_pred CeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHH
Q 006442 563 TLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSL 631 (645)
Q Consensus 563 ~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~ 631 (645)
+|||||||||+||.++.+.+.+.|.+. +.|+|+|||+++.+.. ||+|++|++|++++ .|+++++.+.
T Consensus 505 ~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~-aD~Iivl~~G~i~e-~G~~~eL~~~ 573 (588)
T PRK11174 505 QLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ-WDQIWVMQDGQIVQ-QGDYAELSQA 573 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHh-CCEEEEEeCCeEee-cCCHHHHHhc
Confidence 999999999999999999999999876 4699999999999876 99999999999985 6888887643
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=322.02 Aligned_cols=198 Identities=20% Similarity=0.363 Sum_probs=168.2
Q ss_pred EEEEeeeeeeC--CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------cch
Q 006442 425 VTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNY 492 (645)
Q Consensus 425 i~~~~v~~~y~--~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~ 492 (645)
|+++|++++|+ .+.+|+++||+|++||+++|+|+||||||||+++|+|+++ .+|+|.++|.++. .+|
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGV 81 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEE
Confidence 88999999994 4679999999999999999999999999999999999998 7899999998752 234
Q ss_pred hccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCc-----------CCHhHHHHHHHHHHHccC
Q 006442 493 FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSL-----------LSGGEKARLAFCKFMVKP 561 (645)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~-----------LSgGqkqrv~lAral~~~ 561 (645)
++|+ +.++ ..|+.+|+.... .+..+++.+.++.+|+. +..++.+.. ||||||||++|||||+.+
T Consensus 82 v~q~--~~lf-~~tv~~nl~~~~-~~~~~~~~~~l~~~gL~-~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~ 156 (275)
T cd03289 82 IPQK--VFIF-SGTFRKNLDPYG-KWSDEEIWKVAEEVGLK-SVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK 156 (275)
T ss_pred ECCC--cccc-hhhHHHHhhhcc-CCCHHHHHHHHHHcCCH-HHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 5554 3343 469999995322 24556788899999994 556777765 999999999999999999
Q ss_pred CCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 562 STLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 562 p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|+||||||||++||+.++..+++.|++. +.|||+||||++++.. ||||++|++|+++++ |..+++.+
T Consensus 157 p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~-g~~~~l~~ 225 (275)
T cd03289 157 AKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKVRQY-DSIQKLLN 225 (275)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh-CCEEEEecCCeEeec-CCHHHHhh
Confidence 9999999999999999999999999864 4599999999999976 999999999999865 66655543
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 645 | ||||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 1e-21 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 2e-21 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 1e-07 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 1e-20 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 2e-20 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 1e-07 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 1e-20 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 3e-20 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 1e-07 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 8e-15 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-14 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 2e-14 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 2e-14 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 2e-14 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 2e-14 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 3e-14 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 3e-14 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 4e-14 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 4e-14 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 5e-14 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 5e-14 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 5e-14 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 5e-14 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 5e-14 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 7e-14 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 1e-13 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-13 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 3e-13 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 4e-13 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 4e-13 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-12 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-12 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 2e-12 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 3e-12 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 4e-12 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 5e-12 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 6e-12 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 8e-12 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 1e-11 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-11 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-11 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 8e-11 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 9e-11 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-10 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-10 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 1e-10 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 3e-10 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-10 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 4e-10 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 5e-10 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 5e-10 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 6e-10 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 8e-10 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 1e-09 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-09 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 2e-09 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 2e-09 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-09 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 2e-09 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 2e-09 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-09 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-09 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 3e-09 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 3e-09 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 4e-09 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 6e-09 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 7e-09 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 7e-09 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 8e-09 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 8e-09 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 2e-08 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-08 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 2e-08 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 2e-08 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 2e-08 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 3e-08 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-08 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 5e-08 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 6e-08 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 7e-08 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 7e-08 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 8e-08 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 9e-08 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 1e-07 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-07 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-07 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 5e-07 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 1e-06 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-06 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 3e-06 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 6e-06 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 3e-05 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 2e-04 |
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 645 | |||
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-86 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-84 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 6e-48 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-47 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-36 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 3e-69 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-28 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-59 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 4e-57 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-27 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 7e-34 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 3e-28 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-32 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-25 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-30 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-19 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-28 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-20 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 9e-28 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 9e-23 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 1e-27 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 2e-20 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 2e-27 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 1e-15 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 3e-26 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 5e-16 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 2e-18 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 8e-16 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 4e-09 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-08 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 2e-17 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 2e-13 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 4e-17 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 2e-14 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 6e-17 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 1e-08 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-16 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-12 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 2e-16 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 7e-14 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 4e-16 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 2e-09 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 1e-15 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 3e-12 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 1e-15 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 9e-15 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 1e-15 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 4e-12 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 3e-15 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 7e-07 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 3e-15 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 7e-15 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 3e-15 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 7e-12 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 6e-15 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 8e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-15 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-12 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 8e-15 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 9e-09 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 9e-15 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 7e-08 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 1e-14 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 6e-12 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 1e-14 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 1e-12 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 1e-14 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 5e-13 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 1e-14 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 8e-12 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 4e-14 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 6e-08 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-13 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-08 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 2e-13 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 3e-07 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 2e-13 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 8e-13 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 2e-13 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 5e-07 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 3e-13 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 4e-13 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 1e-07 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 5e-13 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 5e-12 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 2e-12 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 8e-12 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 4e-04 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 1e-11 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 8e-07 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 2e-11 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 8e-10 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 5e-10 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-08 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 1e-08 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 3e-07 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 1e-08 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-08 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-06 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 3e-08 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 7e-08 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 3e-06 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 1e-05 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 2e-05 |
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 281 bits (721), Expect = 2e-86
Identities = 116/534 (21%), Positives = 210/534 (39%), Gaps = 100/534 (18%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
E+ Y + VK G VG+VG NG GKTT ++I+AGQ P+ + N
Sbjct: 95 EDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDN 154
Query: 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEM------EIAGKLERVQKALESAVDDMDLMG 214
+ AF E + R E K + + GK+ + K +D +G
Sbjct: 155 VIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK-------VDEVG 207
Query: 215 RLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM-RMSLGKI 273
+ + L+ + + LD ++ +L SG ++ R+++
Sbjct: 208 KFEEVVKELELE------NVLDRELHQL-------------------SGGELQRVAIAAA 242
Query: 274 LLQDPDLLLLDEPTNHLDLDT---IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETE 330
LL+ DEP+++LD+ + + L + ++++ HD A LD L I
Sbjct: 243 LLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIH--- 299
Query: 331 MGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEK 390
V G Y + K T++ IN G
Sbjct: 300 --VVYGEPGVYGIFSKPKG-------------------TRNGINEFLQG----------- 327
Query: 391 KLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERG 450
L++E +P++ + K+ ++V L Y L I +G
Sbjct: 328 ---YLKDENVRFRPYEIRFTKLS-ERVDVERETLVEYPRLVKDYGSFKL-EVEPGEIRKG 382
Query: 451 EKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLET 510
E I+GPNG GK+T +K++ G+E+P G+V + Q + + TV E
Sbjct: 383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAY-----KPQYIKAEYEGTVYEL 437
Query: 511 VAEAAED-----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565
+++ + ++ LG D+ DR V LSGGE R+A +++ + +
Sbjct: 438 LSKIDSSKLNSNFYKTELLKPLGI----IDLYDRNVEDLSGGELQRVAIAATLLRDADIY 493
Query: 566 VLDEPTNHLDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKG 615
+LDEP+ +LD+ + + + + + T + V HD + + +R++ +G
Sbjct: 494 LLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEG 547
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 285 bits (729), Expect = 1e-84
Identities = 100/518 (19%), Positives = 181/518 (34%), Gaps = 98/518 (18%)
Query: 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+ S +Y +L +K+ + G+ G NG GK+T +R IA +
Sbjct: 433 GEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDG---- 488
Query: 155 IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMG 214
+ + ++ + + + + L+ V ++
Sbjct: 489 FPTQEECRTVYVEHDID-------------GTHSDTSV---LDFVFESGVGT-------- 524
Query: 215 RLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL 274
+ + E GFT + +++ S GW+M+++L + +
Sbjct: 525 ---------------------KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAV 563
Query: 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVS 334
L++ D+LLLDEPTNHLD + WL YL + + ISHD FLD +C I+ E
Sbjct: 564 LRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKL 623
Query: 335 RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLER 394
R Y+GN++++V + + E +L
Sbjct: 624 RKYKGNFTEFVKKCP------------AAKAYE-----------------------ELSN 648
Query: 395 LQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGY--EDRLLFNRANLTIERGEK 452
E + +P + +K + +++V + N+EF Y + N +
Sbjct: 649 TDLEFKFPEPGYLEGVKTK-------QKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSR 701
Query: 453 TAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD--LDKTVLET 510
A+IGPNG GKSTL+ ++ G P GEV N Y +Q+ ++ LDKT E
Sbjct: 702 IAVIGPNGAGKSTLINVLTGELLPTSGEVYTH-ENCRIAYIKQHAFAHIESHLDKTPSEY 760
Query: 511 VAEAAEDWR-IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569
+ + + + + N K+ + G + +T
Sbjct: 761 IQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECS 820
Query: 570 PTNHLDIPSKEMLEEAISEYKGTVITVSHD-RYFVKQI 606
+I K + I K +
Sbjct: 821 FLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMV 858
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 180 bits (457), Expect = 6e-48
Identities = 65/244 (26%), Positives = 113/244 (46%), Gaps = 7/244 (2%)
Query: 384 RASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRA 443
+K + +E ++ + F + G + Y ++L N+
Sbjct: 396 MTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDL-CNCEFSLAYGAKILLNKT 454
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503
L ++R + I GPNGCGKSTL++ I + G E + Y E +
Sbjct: 455 QLRLKRARRYGICGPNGCGKSTLMRAIANGQV--DGFPTQEECRTV--YVEH-DIDGTHS 509
Query: 504 DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563
D +VL+ V E+ + + IK L F +M+ +S LSGG K +LA + +++ +
Sbjct: 510 DTSVLDFVFESGVGTK-EAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNAD 568
Query: 564 LLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAG 623
+L+LDEPTNHLD + L ++ T IT+SHD F+ + ++ +G L+ Y G
Sbjct: 569 ILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKG 628
Query: 624 DYNQ 627
++ +
Sbjct: 629 NFTE 632
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 179 bits (456), Expect = 1e-47
Identities = 67/359 (18%), Positives = 130/359 (36%), Gaps = 76/359 (21%)
Query: 54 VEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVT-- 111
V+K AKA S + E K + + VK+ N+ Y G +
Sbjct: 634 VKKCPAAKAY------EELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKP 687
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQE-- 169
+ D+ ++ ++ ++G NGAGK+T + ++ G+ P SG V N +IA++ Q
Sbjct: 688 QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTH-ENCRIAYIKQHAF 746
Query: 170 --FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL----------- 216
E + +T E F+ + ++ E+ + M+ + ++
Sbjct: 747 AHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIH 806
Query: 217 --------------------------------------LDEFDLLQRKAQAVN-LDTLDA 237
+ +L++ ++ V +D +A
Sbjct: 807 SRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEA 866
Query: 238 KVSKLMPE------------LGFTADDG-DRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
S LG + + S G ++++ L Q P L++LD
Sbjct: 867 LASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLD 926
Query: 285 EPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343
EPTN+LD D++ L L + + ++II+H F L ++ + G N+
Sbjct: 927 EPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGHNWVS 985
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 1e-36
Identities = 41/238 (17%), Positives = 83/238 (34%), Gaps = 12/238 (5%)
Query: 392 LERLQEEEQIEKPFQ-RKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERG 450
E +Q Q + + + + E + + + R
Sbjct: 758 SEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEY 817
Query: 451 EKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLET 510
E + ++G N KS +M ++ + ++ ++ +
Sbjct: 818 ECSFLLGENIGMKSERWVPMMSVDNAW----------IPRGELVESHSKMVAEVDMKEAL 867
Query: 511 VAEAAEDWRIDDIKGLLGRCNFKAD-MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569
+ +I+ + + ++ LSGG+K +L + L+VLDE
Sbjct: 868 ASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDE 927
Query: 570 PTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQ 627
PTN+LD S L +A+ E++G VI ++H F K + V VK + ++
Sbjct: 928 PTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGHNWVS 985
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 233 bits (597), Expect = 3e-69
Identities = 101/528 (19%), Positives = 196/528 (37%), Gaps = 82/528 (15%)
Query: 101 ENISKSYKGVTVLKDVTWEV-KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
+ Y V K K +G++G NG GKTT L+I+AG+ P+ G+
Sbjct: 3 GEVIHRY-KVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVG 61
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
++ + E+ +E S + + +E K L+ V +L +
Sbjct: 62 KDEVLKRFRGKEIYN---YFKELYSNELKIVHKIQYVEYASKFLKGTV------NEILTK 112
Query: 220 FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD 279
D +K + L + L ++ S G R+ + LL++ D
Sbjct: 113 IDERGKKDEVKELLNMT----NLW----------NKDANILSGGGLQRLLVAASLLREAD 158
Query: 280 LLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTY 337
+ + D+P+++LD+ + + ++ ++++ HD LD L I S
Sbjct: 159 VYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESS--V 216
Query: 338 EGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQE 397
G S+ + + + K + R + L+ + +
Sbjct: 217 YGRVSKSYAARVG--INNF------------LKGYLPAENMKI---RPDEIKFMLKEVSD 259
Query: 398 EEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIG 457
+ + + + + D L N + GE I+G
Sbjct: 260 LDLSKDLKTKMK-----------------WTKIIKKLGDFQLVVD-NGEAKEGEIIGILG 301
Query: 458 PNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAED 517
PNG GK+T ++++G G V + + +Y Q + D TV + + A++D
Sbjct: 302 PNGIGKTTFARILVGEITADEGSVTPEKQIL--SYKPQR--IFPNYDGTVQQYLENASKD 357
Query: 518 ------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571
W +++ L +L+ V+ LSGGE +L + K + L VLD+P+
Sbjct: 358 ALSTSSWFFEEVTKRLNL----HRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPS 413
Query: 572 NHLDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKG 615
++LD+ + + ++ E K + HD I +R++ KG
Sbjct: 414 SYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKG 461
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 2e-28
Identities = 47/233 (20%), Positives = 89/233 (38%), Gaps = 50/233 (21%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
K I K L E K+GE +G++G NG GKTT RI+ G+ D G+V K
Sbjct: 271 KWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK 329
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
+++ Q + TV++ +A K+ + +
Sbjct: 330 --QILSYKPQRIFPNYDGTVQQYLENASKDALS----------------TSSWFFEEVTK 371
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
+L +L+ + V S G ++ + L ++
Sbjct: 372 RLNL-----------------HRLL----------ESNVNDLSGGELQKLYIAATLAKEA 404
Query: 279 DLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
DL +LD+P+++LD++ + ++ ++ II HD + D + +I+
Sbjct: 405 DLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRII 457
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 207 bits (530), Expect = 1e-59
Identities = 107/545 (19%), Positives = 203/545 (37%), Gaps = 99/545 (18%)
Query: 90 GASSISSGVKLE-NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148
G S +LE + Y + VK+G VG+VG NG GK+T ++I+AGQ
Sbjct: 13 GLVPRSHMEQLEEDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLI 72
Query: 149 PDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSA-FKEEM-----EIAGKLERVQKA 202
P+ + + AF E + + ++ + K + + +
Sbjct: 73 PNLCGDNDSWDGVIRAFRGNELQ-NYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVI--EL 129
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262
L+ D+ + ++ +L +R + S
Sbjct: 130 LK-KADETGKLEEVVKALELENVL---------------------------EREIQHLSG 161
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIE---WLEGYLGKQDVPMVIISHDRAFL 319
G R+++ LL++ DEP+++LD+ L ++ ++++ HD A L
Sbjct: 162 GELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVL 221
Query: 320 DQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAG 379
D L I G Y + K T++ IN
Sbjct: 222 DYLSDIIHVVYGE-----PGVYGIFSQPKG-------------------TRNGINEF--- 254
Query: 380 ANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLL 439
L ++E + + ++VT L Y L
Sbjct: 255 ------------LRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRL 302
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAE 499
I++GE I+GPNG GK+T +K++ G+E+P G++ + Q
Sbjct: 303 -EVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAY-----KPQYI 356
Query: 500 ALDLDKTVLETVAEAAED-----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF 554
D + TV E +++ + ++ LG D+ DR+V+ LSGGE R+A
Sbjct: 357 KADYEGTVYELLSKIDASKLNSNFYKTELLKPLGI----IDLYDREVNELSGGELQRVAI 412
Query: 555 CKFMVKPSTLLVLDEPTNHLDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRV 610
+++ + + +LDEP+ +LD+ + + + + + T + V HD + + +R+
Sbjct: 413 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL 472
Query: 611 VEVKG 615
+ +G
Sbjct: 473 MVFEG 477
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 202 bits (516), Expect = 4e-57
Identities = 96/540 (17%), Positives = 190/540 (35%), Gaps = 102/540 (18%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
+++ Y + + G+ +GLVG NG GK+T L+I+AG+++P+ G
Sbjct: 81 AHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEW 140
Query: 161 MKIA--FLSQEFEVSMSRTVREEFMSAFKEEM----------EIAGKLERVQKALESAVD 208
+I F E + ++ + ++ + K + + E ++ +E + +
Sbjct: 141 QEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPE 200
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
D+ R + L ++ R + S G R
Sbjct: 201 DVK---RYIKILQL-----------------ENVL----------KRDIEKLSGGELQRF 230
Query: 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCTK 325
++G +Q+ D+ + DEP+++LD+ L ++ + HD + LD L
Sbjct: 231 AIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDF 290
Query: 326 IVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQ-TKDLINRLGAGANSGR 384
+ ++ + + I I R
Sbjct: 291 VC-----------------IIYGVPSVYGVVTLPASVREGINIFLDGHIPAENLRF---R 330
Query: 385 ASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRAN 444
+ + ++ E+ Q + + +G +V
Sbjct: 331 TEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVE------------------E 372
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLD 504
E ++G NG GK+TL+KL+ G KP G+ + N + Q A
Sbjct: 373 GEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKL-----NVSMKPQKIAPKFP 427
Query: 505 KTVLETVAEAAED-----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV 559
TV + + D+ L D++D++V LSGGE R+A +
Sbjct: 428 GTVRQLFFKKIRGQFLNPQFQTDVVKPLRI----DDIIDQEVQHLSGGELQRVAIVLALG 483
Query: 560 KPSTLLVLDEPTNHLDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKG 615
P+ + ++DEP+ +LD + +++ I K T V HD + ++V+ +G
Sbjct: 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEG 543
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 2e-27
Identities = 46/223 (20%), Positives = 78/223 (34%), Gaps = 32/223 (14%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ Y T G+ ++G NG GKST LK++ G +KP G
Sbjct: 76 PTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFD 135
Query: 483 LGEHNVL---------------------------PNYFEQNQAEALDLDKTVLETVAEAA 515
P Y + + V E +
Sbjct: 136 DPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM 195
Query: 516 EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575
E +D+K + + ++L R + LSGGE R A V+ + + + DEP+++LD
Sbjct: 196 EK-SPEDVKRYIKILQLE-NVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLD 253
Query: 576 IPSKEMLEEAISEYK---GTVITVSHDRYFVKQIVNRVVEVKG 615
+ + + I VI V HD + + + V + G
Sbjct: 254 VKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYG 296
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 7e-34
Identities = 41/215 (19%), Positives = 84/215 (39%), Gaps = 28/215 (13%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-L 482
++ + + + + + + + I +G+K + G NG GK+TLL ++ E G V L
Sbjct: 21 LIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNL 80
Query: 483 LGE--HNVLPNYFE---------QNQAEALDLDKTVLETVAEAAED----WRI---DDI- 523
G+ V + + E + V++ V A ++ +
Sbjct: 81 FGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRN 140
Query: 524 --KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM 581
LL + + + LS GEK R+ + ++ +L+LDEP LD ++E
Sbjct: 141 EAHQLLKLVGM-SAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARES 199
Query: 582 LEEAISEYKG-----TVITVSHDRYFVKQIVNRVV 611
L + +I V+H + ++++
Sbjct: 200 LLSILDSLSDSYPTLAMIYVTHFIEEITANFSKIL 234
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 3e-28
Identities = 53/249 (21%), Positives = 94/249 (37%), Gaps = 55/249 (22%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
++L+ I + +G T+LK ++W++ KG+K L G+NGAGKTT L I+ E SG V
Sbjct: 22 IQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLF 81
Query: 156 -----KAKSNM-----KIAFLSQEFEVSMSR--TVREEFMSAFKEEMEIAGKLERVQKAL 203
K + I F+S V + +S + G + +
Sbjct: 82 GKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGA---FKSIGVYQDIDDE- 137
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
+ +LL + + + + S+G
Sbjct: 138 -----IRNEAHQLLKLVGMSAKA---------------------------QQYIGYLSTG 165
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK-----QDVPMVIISHDRAF 318
+ R+ + + L+ P +L+LDEP LD E L L + M+ ++H
Sbjct: 166 EKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEE 225
Query: 319 LDQLCTKIV 327
+ +KI+
Sbjct: 226 ITANFSKIL 234
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 1e-32
Identities = 50/212 (23%), Positives = 98/212 (46%), Gaps = 29/212 (13%)
Query: 423 SVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
++++NL F Y+ + LF + N + +G+ A++G NGCGKSTLL L++G+ +P G++
Sbjct: 3 KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 482 -LLGEHNVLPNYFEQNQAEALDLDKTVLETVA------------EAAEDWRI-DDIKGLL 527
+ +P Q + +VL+ V + D+++ L
Sbjct: 63 EVYQSIGFVP------QFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYL 116
Query: 528 GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK----EMLE 583
+ R+ + LSGG++ + + + L++LDEPT+ LD+ ++ +L
Sbjct: 117 NLTHLA----KREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLI 172
Query: 584 EAISEYKGTVITVSHDRYFVKQIVNRVVEVKG 615
+ TV+ +H V I N+ + +
Sbjct: 173 DLAQSQNMTVVFTTHQPNQVVAIANKTLLLNK 204
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 1e-25
Identities = 46/228 (20%), Positives = 88/228 (38%), Gaps = 48/228 (21%)
Query: 95 SSGVKLENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+ + +EN+ Y+ + + + +++ KG+ + ++G NG GK+T L ++ G P G
Sbjct: 2 NKALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGK 61
Query: 154 VIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
+ + I F+ Q F + +V D+ LM
Sbjct: 62 IEVYQ---SIGFVPQFFSSPFAYSVL-----------------------------DIVLM 89
Query: 214 GRL--LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271
GR ++ F + D + + L R S S G + + +
Sbjct: 90 GRSTHINTFAKPKSH------D--YQVAMQALDYLN-LTHLAKREFTSLSGGQRQLILIA 140
Query: 272 KILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHD 315
+ + + L+LLDEPT+ LDL + L Q++ +V +H
Sbjct: 141 RAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ 188
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 2e-30
Identities = 41/191 (21%), Positives = 64/191 (33%), Gaps = 37/191 (19%)
Query: 436 DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-------- 487
+ + + GE ++GPNG GKSTLL + G+ G +
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEAWSATK 70
Query: 488 ------VLPNYFEQNQAEALDLDKTVLETVA---EAAEDWRIDDIKGLLGRCNFKADMLD 538
L Q + V + + + + G D L
Sbjct: 71 LALHRAYLS------QQQTPPFATPVWHYLTLHQHDKTRTEL--LNDVAGALAL-DDKLG 121
Query: 539 RKVSLLSGGEKARLAF-------CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK- 590
R + LSGGE R+ LL+LDEP N LD+ + L++ +S
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ 181
Query: 591 --GTVITVSHD 599
++ SHD
Sbjct: 182 QGLAIVMSSHD 192
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 2e-19
Identities = 54/230 (23%), Positives = 80/230 (34%), Gaps = 72/230 (31%)
Query: 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI---KAKSNM---- 161
T L ++ EV+ GE + LVG NGAGK+T L +AG G++ +
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATK 70
Query: 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL-- 216
A+LSQ+ + V + + +
Sbjct: 71 LALHRAYLSQQQTPPFATPVWH-------------------------YL----TLHQHDK 101
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
+LL A A+ LD R S G R+ L ++LQ
Sbjct: 102 TRT-ELLNDVAGALALDDK-----------------LGRSTNQLSGGEWQRVRLAAVVLQ 143
Query: 277 D-------PDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPMVIISHD 315
LLLLDEP N LD+ + L L +Q + +V+ SHD
Sbjct: 144 ITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA-LSQQGLAIVMSSHD 192
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 2e-28
Identities = 52/212 (24%), Positives = 87/212 (41%), Gaps = 17/212 (8%)
Query: 424 VVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
++ +KN+ + + NL + GEK I+GPNG GK+TLL+ I GL P G
Sbjct: 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSG 58
Query: 480 EVLLGEHNV--LPNY----FEQNQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCN 531
+ + V + NY +A + + TV + V E D +L
Sbjct: 59 NIFINGMEVRKIRNYIRYSTNLPEAYEIGV--TVNDIVYLYEELKGLDRDLFLEMLKALK 116
Query: 532 FKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG 591
++L RK+ LS G+ + + ++ LDEP ++D + ++ I EY
Sbjct: 117 LGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK 176
Query: 592 TVITVSHDRYFVKQIVNRVVEV-KGSNLQDYA 622
I V+H+ + G+ LQ
Sbjct: 177 EGILVTHELDMLNLYKEYKAYFLVGNRLQGPI 208
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 2e-20
Identities = 47/242 (19%), Positives = 93/242 (38%), Gaps = 59/242 (24%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++L+N+ + G L+++ EV GEKV ++G NG+GKTT LR I+G P SGN
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGL-LPYSGN 59
Query: 154 VIKAKSNMK--------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
+ ++ L + +E+ + TV + EE++ + + + L+
Sbjct: 60 IFINGMEVRKIRNYIRYSTNLPEAYEIGV--TVNDIV--YLYEELKGLDR-DLFLEMLK- 113
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
+L +E R + S+G
Sbjct: 114 -------ALKLGEEI--------------------------------LRRKLYKLSAGQS 134
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTK 325
+ + L P+++ LDEP ++D + Y+ + ++++H+ L+
Sbjct: 135 VLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEY 194
Query: 326 IV 327
Sbjct: 195 KA 196
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 9e-28
Identities = 50/230 (21%), Positives = 90/230 (39%), Gaps = 56/230 (24%)
Query: 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG-- 152
S +++ ++S Y VL+ +T ++KG V G NG GKTT L+ I+ +P G
Sbjct: 8 GSKLEIRDLSVGY-DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 153 -----NVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ K K KI FL +E V +S ++ ++ L V K ++ +
Sbjct: 67 IYNGVPITKVKG--KIFFLPEEIIV-------PRKISV-EDYLKAVASLYGV-KVNKNEI 115
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
D L+ ++L K + + S G R
Sbjct: 116 MD------ALESVEVLDLK----------------------------KKLGELSQGTIRR 141
Query: 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISH 314
+ L LL + ++ +LD+P +D D+ + + K+ ++I S
Sbjct: 142 VQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR 191
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 96.0 bits (240), Expect = 9e-23
Identities = 52/205 (25%), Positives = 84/205 (40%), Gaps = 28/205 (13%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
S + I++L GY+ +L R +TIE+G GPNG GK+TLLK I KP GE++
Sbjct: 9 SKLEIRDLSVGYDKPVL-ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 67
Query: 483 LGEHNV---------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD----IKGLLGR 529
+ LP + + +V + + A + + I L
Sbjct: 68 YNGVPITKVKGKIFFLP------EEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 121
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY 589
L +K+ LS G R+ ++ + + VLD+P +D SK + ++I E
Sbjct: 122 VEVLD--LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEI 179
Query: 590 ---KGTVITVSHDRYFVKQIVNRVV 611
KG VI S + +
Sbjct: 180 LKEKGIVIISSRE---ELSYCDVNE 201
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 1e-27
Identities = 50/249 (20%), Positives = 100/249 (40%), Gaps = 66/249 (26%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
V ++++ K +LK +++E+++GE GL+G NGAGKTT LRII+ +P SG V
Sbjct: 16 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF 75
Query: 155 --------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKA-LES 205
+ + I++L +E + E + + +E
Sbjct: 76 GKNVVEEPHEVRK--LISYLPEEAGAYRNMQGI--------EYLRFVAGFYASSSSEIEE 125
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
V+ + L ++ V+++S G
Sbjct: 126 MVER------ATEIAGLGEKI---------------------------KDRVSTYSKGMV 152
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAF 318
++ + + L+ +P L +LDEPT+ LD ++ ++ + +++ SH+
Sbjct: 153 RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILK----QASQEGLTILVSSHNMLE 208
Query: 319 LDQLCTKIV 327
++ LC +I
Sbjct: 209 VEFLCDRIA 217
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 2e-20
Identities = 48/206 (23%), Positives = 86/206 (41%), Gaps = 19/206 (9%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
V +K+L + + + IE GE +IGPNG GK+T L++I L KP G V
Sbjct: 14 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT 73
Query: 483 LGEHNVLPNYFE--QN-----QAEALDLDKTVLETVAEAAEDWRIDD------IKGLLGR 529
+ NV+ E + + + +E + A + ++
Sbjct: 74 VFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEI 133
Query: 530 CNFKADMLDRKVSLLSGGEKARLAF-CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE 588
+ + +VS S G +L MV P L +LDEPT+ LD+ + + + + +
Sbjct: 134 AGLG-EKIKDRVSTYSKGMVRKLLIARALMVNPR-LAILDEPTSGLDVLNAREVRKILKQ 191
Query: 589 YKG---TVITVSHDRYFVKQIVNRVV 611
T++ SH+ V+ + +R+
Sbjct: 192 ASQEGLTILVSSHNMLEVEFLCDRIA 217
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 2e-27
Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 45/221 (20%)
Query: 424 VVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
++ ++ L + Y D L N+ I+RGE TAI+G NG GKSTL + G+ KP G +
Sbjct: 7 ILKVEELNYNYSDGTHALKG-INMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 482 LLGEHNVLPNYFEQNQAEALDLDK----------------TVLETVA-----------EA 514
L + + ++ + L + +V + V+ E
Sbjct: 66 LFDNKPI-----DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEI 120
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
+ R+D+ G + D+ LS G+K R+A +V +L+LDEPT L
Sbjct: 121 RK--RVDNALKRTGI----EHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174
Query: 575 DIPSKEMLEEAI----SEYKGTVITVSHDRYFVKQIVNRVV 611
D + + + E T+I +HD V + V
Sbjct: 175 DPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVF 215
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 76.4 bits (189), Expect = 1e-15
Identities = 51/261 (19%), Positives = 100/261 (38%), Gaps = 84/261 (32%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI- 155
+K+E ++ +Y G LK + +K+GE ++G NG GK+T + G +P SG ++
Sbjct: 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILF 67
Query: 156 ------KAKSNMK-------IAFL---SQEFEVSMSRTVREEFMSAF--------KEEME 191
++ + I F +Q F +V ++ +F ++E+
Sbjct: 68 DNKPIDYSRKGIMKLRESIGIVFQDPDNQLFS----ASVYQDV--SFGAVNMKLPEDEIR 121
Query: 192 IAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251
+RV AL+ ++ L
Sbjct: 122 -----KRVDNALK------------------------RTGIEHL---------------- 136
Query: 252 DGDRLVASFSSGWQM-RMSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQD 306
D+ S G Q R+++ +L+ +P +L+LDEPT LD + ++ L +
Sbjct: 137 -KDKPTHCLSFG-QKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELG 194
Query: 307 VPMVIISHDRAFLDQLCTKIV 327
+ ++I +HD + C +
Sbjct: 195 ITIIIATHDIDIVPLYCDNVF 215
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 3e-26
Identities = 60/221 (27%), Positives = 88/221 (39%), Gaps = 48/221 (21%)
Query: 425 VTIKNLEFGYEDRLLFNRA-----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
+ + N+ + + +L I GE + G G GKSTLL+++ GL +P G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 480 EVLLGEHNVLPNYFE---------QN---Q-------------AEALDLDKTVLETVAEA 514
+VL +E Q Q + D+ + V +A
Sbjct: 63 DVLYDGERK--KGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKA 120
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNH 573
E +D DR LSGGEK R+A +V +P +L+LDEP
Sbjct: 121 MEFVGLDF-----------DSFKDRVPFFLSGGEKRRVAIASVIVHEPD-ILILDEPLVG 168
Query: 574 LDIPSKEMLEEAISEYKG---TVITVSHDRYFVKQIVNRVV 611
LD K L + ++K TVI +SHD V V+RVV
Sbjct: 169 LDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVV 209
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 5e-16
Identities = 55/260 (21%), Positives = 100/260 (38%), Gaps = 83/260 (31%)
Query: 98 VKLENISKSYKGVT-----VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
+++ N+S + T L++V+ + +GE + + G G+GK+T L+I+AG EP SG
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 153 NVIKAKSNMKIAFLSQEFEVSM----------SRTVREEFMSAF-------KEEMEIAGK 195
+V+ K + + + + + V +E AF +
Sbjct: 63 DVLYDGERKKGYEIRR--NIGIAFQYPEDQFFAERVFDEV--AFAVKNFYPDRDPV---- 114
Query: 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255
V+KA+E V LD K DR
Sbjct: 115 -PLVKKAME------------------------FVGLDFDSFK---------------DR 134
Query: 256 LVASFSSGWQM-RMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDV 307
+ S G + R+++ +++ +PD+L+LDEP LD L +E
Sbjct: 135 VPFFLSGG-EKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVE----KWKTLGK 189
Query: 308 PMVIISHDRAFLDQLCTKIV 327
+++ISHD + ++V
Sbjct: 190 TVILISHDIETVINHVDRVV 209
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 2e-18
Identities = 51/203 (25%), Positives = 93/203 (45%), Gaps = 36/203 (17%)
Query: 425 VTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
+ KN+ F Y ++ + NL ++ G+ A++G +GCGKST ++L+ L P G V
Sbjct: 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447
Query: 482 LLGEHNVL-----------------PNYFEQNQAE--ALDLDKTVLETVAEAAEDWRIDD 522
+ ++ P F AE + ++ + +A ++ D
Sbjct: 448 SIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYD 507
Query: 523 -IKGLLGRCNFKADMLDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
I L D V + LSGG+K R+A + +V+ +L+LDE T+ LD
Sbjct: 508 FIMKL-------PHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTE 560
Query: 578 SKEMLEEAISEY-KG-TVITVSH 598
S+ +++ A+ + +G T I ++H
Sbjct: 561 SEAVVQAALDKAREGRTTIVIAH 583
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 8e-16
Identities = 51/205 (24%), Positives = 92/205 (44%), Gaps = 38/205 (18%)
Query: 425 VTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
V + F Y + +L +++G+ A++G +GCGKST+++L+ P G V
Sbjct: 1031 VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV 1090
Query: 482 LLGEHNV----LPNYFEQ-----------------NQAEALDLDKTVLETVAEAAEDWRI 520
L + + Q N A + E + AA++ I
Sbjct: 1091 FLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANI 1150
Query: 521 DD-IKGLLGRCNFKADMLDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575
I L D + +V + LSGG+K R+A + +V+ +L+LDE T+ LD
Sbjct: 1151 HQFIDSL-------PDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALD 1203
Query: 576 IPSKEMLEEAISEY-KG-TVITVSH 598
S+++++EA+ + +G T I ++H
Sbjct: 1204 TESEKVVQEALDKAREGRTCIVIAH 1228
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 4e-09
Identities = 54/265 (20%), Positives = 98/265 (36%), Gaps = 85/265 (32%)
Query: 58 SIAKAQSDVESLFS-----SSADEFENKKYSNKQSNTGASSISSGVKLENISKSY---KG 109
AKA + D + + + + V+ + +Y
Sbjct: 993 DYAKATVSASHIIRIIEKTPEIDSYSTQGLKP-------NMLEGNVQFSGVVFNYPTRPS 1045
Query: 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE---EPDSGNV------IKAKSN 160
+ VL+ ++ EVKKG+ + LVG +G GK+T ++ E +P +G+V IK + N
Sbjct: 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKST---VVQLLERFYDPMAGSVFLDGKEIK-QLN 1101
Query: 161 MK-----IAFLSQE---FEVSMSRTVRE------EFMSAFKEEMEIAGKLERVQKALESA 206
++ + +SQE F ++ E EE+ A
Sbjct: 1102 VQWLRAQLGIVSQEPILF----DCSIAENIAYGDNSRVVSYEEIVRA------------- 1144
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
A+ N+ + L P+ + GD+ S G +
Sbjct: 1145 --------------------AKEANIHQF---IDSL-PD-KYNTRVGDKGT-QLSGGQKQ 1178
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD 291
R+++ + L++ P +LLLDE T+ LD
Sbjct: 1179 RIAIARALVRQPHILLLDEATSALD 1203
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 65/259 (25%), Positives = 112/259 (43%), Gaps = 75/259 (28%)
Query: 58 SIAKAQSDVESLFSSSADEFENKKYSNKQSNTGA--SSISSGVKLENISKSY---KGVTV 112
+ A A+ +F +NK + S +G +I ++ +NI SY K V +
Sbjct: 350 AFANARGAAYEVFKI----IDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQI 405
Query: 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV------IKAKSNMK---- 162
LK + +VK G+ V LVG +G GK+T ++++ +P G V I+ N++
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIR-TINVRYLRE 464
Query: 163 -IAFLSQE---FEVSMSRTVREEFMSAFKEEMEIA-GK----LERVQKALESAVDDMDLM 213
I +SQE F + T+ E I G+ ++ ++KA++ A
Sbjct: 465 IIGVVSQEPVLF----ATTIAE----------NIRYGREDVTMDEIEKAVKEA------- 503
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM-RMSLGK 272
+F + KL P F G+R + SG Q R+++ +
Sbjct: 504 --NAYDF------------------IMKL-PH-QFDTLVGER--GAQLSGGQKQRIAIAR 539
Query: 273 ILLQDPDLLLLDEPTNHLD 291
L+++P +LLLDE T+ LD
Sbjct: 540 ALVRNPKILLLDEATSALD 558
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 2e-17
Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 45/204 (22%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ I++L +++ L + +L +E GE I+GP G GK+ L+LI G P G +LL
Sbjct: 1 MIEIESLSRKWKNFSL-DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILL 59
Query: 484 GEHNV--LP-----------NY--F-----EQNQAEALDLDKT-VLETVAEAAEDWRIDD 522
+V L NY F ++N + + K + V + A D +I+
Sbjct: 60 DGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIE- 118
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNHLDIPSK-- 579
+LDR LSGGE+ R+A + +V P LL LDEP + LD +
Sbjct: 119 ------------HLLDRNPLTLSGGEQQRVALARALVTNPKILL-LDEPLSALD--PRTQ 163
Query: 580 -EMLEE--AISEYKG-TVITVSHD 599
E + + TV+ ++HD
Sbjct: 164 ENAREMLSVLHKKNKLTVLHITHD 187
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 2e-13
Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+++E++S+ + L +++ +V+ GE ++G GAGKT L +IAG PDSG ++
Sbjct: 2 IEIESLSRKW-KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 4e-17
Identities = 52/213 (24%), Positives = 90/213 (42%), Gaps = 54/213 (25%)
Query: 425 VTIKNLE--FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ +KN+ F + + N+ IE GE+ I+GP+G GK+T +++I GL+ P GE+
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 483 LGEHNV-------LP-----------NY-------FEQNQAEALDLDKT----VLETVAE 513
+ V +P + +N A L K + + V E
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE 123
Query: 514 AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNH 573
A+ I +L+ LSG ++ R+A + +VK +LL+LDEP ++
Sbjct: 124 VAKILDIH-------------HVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 574 LDIPSK---EMLEEAIS----EYKGTVITVSHD 599
LD ++ + T++ VSHD
Sbjct: 171 LD--ARMRDSARAL-VKEVQSRLGVTLLVVSHD 200
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 53/219 (24%), Positives = 95/219 (43%), Gaps = 71/219 (32%)
Query: 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+ ++N+SK +K V L +V ++ GE+ G++G +GAGKTT +RIIAG + P +G
Sbjct: 2 VRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 154 VI---KAKSNMKIAFLS-QEFEVSM---------SRTVREEFMSAF--------KEEMEI 192
+ + ++ + ++ ++ M + T E + AF KEE+
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFEN-I-AFPLTNMKMSKEEIR- 118
Query: 193 AGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252
+RV++ + +LD +L + +
Sbjct: 119 ----KRVEEVAK-----------ILDIHHVLNHFPREL---------------------- 141
Query: 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
S Q R++L + L++DP LLLLDEP ++LD
Sbjct: 142 --------SGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 6e-17
Identities = 58/180 (32%), Positives = 87/180 (48%), Gaps = 28/180 (15%)
Query: 441 NRANLTIERG-EKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LPNY----- 492
R N+ E G + ++GP G GKS L+LI G+ KP GEV L ++ LP
Sbjct: 14 FRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIG 73
Query: 493 --FEQNQAEALDLDKTVLETVA------EAAE-DWRIDDIKGLLGRCNFKADMLDRKVSL 543
Q AL +V +A E E D R+ ++ LG A +LDRK +
Sbjct: 74 FVP---QDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGI----AHLLDRKPAR 126
Query: 544 LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP-SKEMLEE--AISEYKG-TVITVSHD 599
LSGGE+ R+A + +V LL+LDEP + +D+ ++EE + ++ V+HD
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD 186
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 1e-08
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
K + D + L+G GAGK+ L +IAG +PD G V
Sbjct: 6 RAEKRLGNFRLNVDFE---MGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVR 56
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 2e-16
Identities = 62/207 (29%), Positives = 97/207 (46%), Gaps = 49/207 (23%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++N+ + + N NL I+ GE A++GP+G GKSTLL I G+ KP G++
Sbjct: 4 IKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFD 63
Query: 485 EHNV--LP-----------NY-------FEQNQAEALDLDKT----VLETVAEAAEDWRI 520
E +V LP N+ +N A L+L K + + V E A+ I
Sbjct: 64 EKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHI 123
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNHLDIPSK 579
D +L+R LSGG++ R+A + +V +P LL LDEP ++LD +
Sbjct: 124 D-------------KLLNRYPWQLSGGQQQRVAIARALVKEPEVLL-LDEPLSNLD--AL 167
Query: 580 ---EMLEEAIS----EYKGTVITVSHD 599
E+ E + E T + V+HD
Sbjct: 168 LRLEVRAE-LKRLQKELGITTVYVTHD 193
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 55/207 (26%), Positives = 92/207 (44%), Gaps = 54/207 (26%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG--- 152
+KLENI K + T L ++ ++K GE + L+G +G+GK+T L IAG +P SG
Sbjct: 2 VEIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIY 61
Query: 153 ------NVIKAKSNMKIAFLSQEFEV--SMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204
+ K + + + Q + + M TV + + AF E+ A + E +K E
Sbjct: 62 FDEKDVTELPPK-DRNVGLVFQNWALYPHM--TVYKN-I-AFPLELRKAPREEIDKKVRE 116
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
A ++L LL R + S G
Sbjct: 117 VA--------KMLHIDKLLNRYPWQL------------------------------SGGQ 138
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLD 291
Q R+++ + L+++P++LLLDEP ++LD
Sbjct: 139 QQRVAIARALVKEPEVLLLDEPLSNLD 165
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 78.3 bits (194), Expect = 2e-16
Identities = 45/253 (17%), Positives = 86/253 (33%), Gaps = 61/253 (24%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
+ ENI K + L V+ V KG+ ++G NG+GK+T + +I G + D G V
Sbjct: 9 RTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFEN 68
Query: 155 --IKAKSNMKIAFL--------SQEFEVSMSRTVREEFMSAFKEEME--IAGKLERVQKA 202
I K ++ Q + M TV E + E + +
Sbjct: 69 KDITNKEPAELYHYGIVRTFQTPQPLK-EM--TVLENLLIGEICPGESPLNSLFYKKWIP 125
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262
E + + ++L+ L DR S
Sbjct: 126 KEEEMVEKAF--KILEFLKLSHLY---------------------------DRKAGELSG 156
Query: 263 GWQMRMSLGKILLQDPDLLLLDEP--------TNHLDLDTIEWLEGYLGKQDVPMVIISH 314
G + +G+ L+ +P ++++DEP + + + + L+ + + +II H
Sbjct: 157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDI-FNHVLELK----AKGITFLIIEH 211
Query: 315 DRAFLDQLCTKIV 327
+ +
Sbjct: 212 RLDIVLNYIDHLY 224
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 7e-14
Identities = 43/205 (20%), Positives = 75/205 (36%), Gaps = 38/205 (18%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LPNY------ 492
+ ++++ +G+ T IIGPNG GKSTL+ +I G K G V ++
Sbjct: 24 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83
Query: 493 ----FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK--------------- 533
F Q ++ TVLE + + L +
Sbjct: 84 IVRTF-QTPQPLKEM--TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140
Query: 534 ---ADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY 589
+ + DRK LSGG+ + + M P ++V+DEP + + + E
Sbjct: 141 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPK-MIVMDEPIAGVAPGLAHDIFNHVLEL 199
Query: 590 KG---TVITVSHDRYFVKQIVNRVV 611
K T + + H V ++ +
Sbjct: 200 KAKGITFLIIEHRLDIVLNYIDHLY 224
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 77.5 bits (192), Expect = 4e-16
Identities = 46/204 (22%), Positives = 90/204 (44%), Gaps = 37/204 (18%)
Query: 424 VVTIKNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+++ ++++F Y+D + + + A GP+G GKST+ L+ +P GE+
Sbjct: 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 483 LGEHNV----LPNYFEQ-----------------NQAEALDLDKTVLETVAEAAEDWRID 521
+ + L N+ Q N L+ D T E + + +
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYT-DEDLWQVLDLAFAR 119
Query: 522 D-IKGLLGRCNFKADMLDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576
++ + D L+ +V +SGG++ RLA + ++ +L+LDE T LD
Sbjct: 120 SFVENM-------PDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDS 172
Query: 577 PSKEMLEEAISEY-KG-TVITVSH 598
S+ M+++A+ KG T + ++H
Sbjct: 173 ESESMVQKALDSLMKGRTTLVIAH 196
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 2e-09
Identities = 40/213 (18%), Positives = 82/213 (38%), Gaps = 56/213 (26%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-- 154
+ ++ +Y +L+D+++E + + G +G GK+T ++ +P +G +
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
Query: 155 -------IKAKS-NMKIAFLSQEFEVSMSRTVRE-----EFMSAFKEEMEIAGKLERVQK 201
I ++ +I F+SQ+ M+ T+RE E++ L
Sbjct: 62 DGQPIDNISLENWRSQIGFVSQD-SAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAF--- 117
Query: 202 ALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFS 261
F V + P+ + G+R V S
Sbjct: 118 ---------------ARSF------------------VENM-PD-QLNTEVGERGV-KIS 141
Query: 262 SGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
G + R+++ + L++P +L+LDE T LD ++
Sbjct: 142 GGQRQRLAIARAFLRNPKILMLDEATASLDSES 174
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 1e-15
Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 49/207 (23%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ + NL+ + + + ++ GE A++GP+GCGK+T L ++ G+ KP GE+
Sbjct: 4 IRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD 63
Query: 485 EHNV--LP-----------NY-------FEQNQAEALDLDKT----VLETVAEAAEDWRI 520
+ V +P NY +N A L + V + V E A
Sbjct: 64 DVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIAR---- 119
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNHLDIPSK 579
+ ++LDRK + LSGG++ R+A + +V +P LL DEP ++LD +
Sbjct: 120 --KLLI-------DNLLDRKPTQLSGGQQQRVALARALVKQPKVLL-FDEPLSNLD--AN 167
Query: 580 ---EMLEEAIS----EYKGTVITVSHD 599
M E I E T + V+HD
Sbjct: 168 LRMIMRAE-IKHLQQELGITSVYVTHD 193
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 3e-12
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+++ N+ K + V + V++EVK GE V L+G +G GKTT L ++AG +P SG +
Sbjct: 2 PSIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEI 60
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 1e-15
Identities = 59/213 (27%), Positives = 93/213 (43%), Gaps = 53/213 (24%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ + I +L +++ + N +L+++ GE IIG +GCGK+TLL+ + G E+P GE+
Sbjct: 3 AALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEIS 62
Query: 483 LGEHNV------LP-----------NY--F-----EQNQAEALDLDKTVLETVAEAAEDW 518
L + LP F +N A L K A E
Sbjct: 63 LSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGK-----GRTAQERQ 117
Query: 519 RIDDIKGLLGRCNFKADMLDRKVSLLSGGEK-----AR-LAFCKFMVKPSTLLVLDEPTN 572
RI+ + L G +++ R LSGG++ AR LA P +L LDEP +
Sbjct: 118 RIEAMLELTGI----SELAGRYPHELSGGQQQRAALARALA-----PDPELIL-LDEPFS 167
Query: 573 HLDIPSK---EMLEE--AISEYKG-TVITVSHD 599
LD + ++ E+ A G + + VSHD
Sbjct: 168 ALD--EQLRRQIREDMIAALRANGKSAVFVSHD 198
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 9e-15
Identities = 23/60 (38%), Positives = 41/60 (68%)
Query: 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++ + + ++SKS++ VL D++ + GE + ++G +G GKTT LR +AG E+PDSG +
Sbjct: 2 TAALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 1e-15
Identities = 64/207 (30%), Positives = 103/207 (49%), Gaps = 49/207 (23%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V ++NL + + N+ NLTI+ GE ++GP+GCGK+T L++I GLE+P G + G
Sbjct: 12 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFG 71
Query: 485 EHNV--LP-----------NY-------FEQNQAEALDLDKT----VLETVAEAAEDWRI 520
+ +V LP +Y +N A L + K + + V AAE
Sbjct: 72 DRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAE---- 127
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNHLDIPSK 579
+ + ++L+R + LSGG++ R+A + +V +P LL +DEP ++LD +K
Sbjct: 128 --LLQI-------EELLNRYPAQLSGGQRQRVAVARAIVVEPDVLL-MDEPLSNLD--AK 175
Query: 580 ---EMLEEAIS----EYKGTVITVSHD 599
M E I + K T I V+HD
Sbjct: 176 LRVAMRAE-IKKLQQKLKVTTIYVTHD 201
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 4e-12
Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
VKLEN++K + T + + +K GE + L+G +G GKTT LR+IAG EEP G +
Sbjct: 10 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 68
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 3e-15
Identities = 54/270 (20%), Positives = 101/270 (37%), Gaps = 74/270 (27%)
Query: 373 INRLGAGANSGRAS--SAEKKLERLQEEEQIE-----KPFQRKQMKIRFPERGRSGRSVV 425
+ G E + L+EE +++ P + ++ +I F
Sbjct: 8 HHHSSGLVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEF----------- 56
Query: 426 TIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+N+ F Y R + T+ G+ A++GP+G GKST+L+L+ G + +
Sbjct: 57 --ENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRID 114
Query: 485 EHNVLPNYFEQNQAEALDLD-----------KTVL------------------ETVAEAA 515
++ + TVL + V AA
Sbjct: 115 GQDI----------SQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAA 164
Query: 516 EDWRIDD-IKGLLGRCNFKADMLDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEP 570
+ I D I + +V LSGGEK R+A + ++K +++LDE
Sbjct: 165 QAAGIHDAIMAF-------PEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEA 217
Query: 571 TNHLDIPSKEMLEEAISEY-KG-TVITVSH 598
T+ LD ++ ++ ++++ T I V+H
Sbjct: 218 TSALDTSNERAIQASLAKVCANRTTIVVAH 247
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 7e-07
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++ EN+ SY G L+DV++ V G+ + LVG +GAGK+T LR++ + SG +
Sbjct: 54 IEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCI 111
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 3e-15
Identities = 54/214 (25%), Positives = 89/214 (41%), Gaps = 33/214 (15%)
Query: 410 MKIRFPERGRSGRSVVTIKNLEFGYEDRLL-FNRANLTIERGEKTAIIGPNGCGKSTLLK 468
M+ ++ +E Y + I GE ++GP+G GK+T+L+
Sbjct: 1 MRGHHHHHHHGSMTI-EFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILR 59
Query: 469 LIMGLEKPRGGEVLLGEHNV--LPNY-------FEQNQAEALDLDKTVLETVA------- 512
LI GLE+P G+V +G V LP F Q AL TV + V+
Sbjct: 60 LIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVF---QNYALFQHMTVYDNVSFGLREKR 116
Query: 513 --EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDE 569
+ D R+ ++ + +R LSGG++ R+A + + +P LL DE
Sbjct: 117 VPKDEMDARVRELLRFMRL----ESYANRFPHELSGGQQQRVALARALAPRPQVLL-FDE 171
Query: 570 PTNHLDIP-SKEMLEE--AISEYKG-TVITVSHD 599
P +D +E+ + + G T + V+HD
Sbjct: 172 PFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHD 205
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 7e-15
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 85 KQSNTGASSISSGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRII 143
+ + S ++ + K Y G ++ V++++++GE VGL+G +G+GKTT LR+I
Sbjct: 2 RGHHHHHHHGSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLI 61
Query: 144 AGQEEPDSGNVI 155
AG E P G+V
Sbjct: 62 AGLERPTKGDVW 73
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 3e-15
Identities = 50/216 (23%), Positives = 84/216 (38%), Gaps = 61/216 (28%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+KL NI+K + + L +V+ V G+ G++G +GAGK+T +R + E P G+
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 154 VIKAKSNM-------------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG--KLER 198
V+ + +I + Q F + SRTV +E+ K E
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP----LELDNTPKDEV 140
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
++ E LL L + D+ S L
Sbjct: 141 KRRVTE-----------LLSLVGLGDKH---------DSYPSNL---------------- 164
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
S G + R+++ + L +P +LL D+ T+ LD T
Sbjct: 165 --SGGQKQRVAIARALASNPKVLLCDQATSALDPAT 198
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 7e-12
Identities = 54/236 (22%), Positives = 91/236 (38%), Gaps = 60/236 (25%)
Query: 418 GRSGRSVVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473
+ ++ + N+ + +A +L + G+ +IG +G GKSTL++ + L
Sbjct: 18 DDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL 77
Query: 474 EKPRGGEVLLGEHNVLPNYFEQNQAEALDL---------------DKTVLETVAEAAEDW 518
E+P G VL+ + +++E +TV VA E
Sbjct: 78 ERPTEGSVLVDGQELT----TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD 133
Query: 519 RID------------DIKGLLGRCNFKADMLDRKVSLLSGGEK-----AR-LAFCKFMVK 560
+ GL D D S LSGG+K AR LA
Sbjct: 134 NTPKDEVKRRVTELLSLVGL-------GDKHDSYPSNLSGGQKQRVAIARALA-----SN 181
Query: 561 PSTLLVLDEPTNHLDIPSK-----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVV 611
P LL D+ T+ LD P+ E+L++ T++ ++H+ VK+I + V
Sbjct: 182 PKVLLC-DQATSALD-PATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVA 235
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 6e-15
Identities = 53/195 (27%), Positives = 104/195 (53%), Gaps = 21/195 (10%)
Query: 425 VTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+T +N+ F Y+ ++ + NL+I++GE I+G +G GKSTL KLI P G+VL
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 483 LGEHN---VLPNYFEQN----QAEALDLDKTVLETVAEAAEDWRIDDIKG---LLGRCNF 532
+ H+ PN+ + + + L++++++ ++ A ++ + L G +F
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 533 KADM---LDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585
+++ + V + LSGG++ R+A + +V +L+ DE T+ LD S+ ++
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 187
Query: 586 ISEY-KG-TVITVSH 598
+ + KG TVI ++H
Sbjct: 188 MHKICKGRTVIIIAH 202
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 55.9 bits (136), Expect = 8e-09
Identities = 43/214 (20%), Positives = 86/214 (40%), Gaps = 64/214 (29%)
Query: 98 VKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
+ NI YK +L ++ +K+GE +G+VG +G+GK+T ++I P++G V
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 155 --------IKAKS-NMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIA-GK----LE 197
++ + Q+ +R++ + I+ +E
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLL----NRSIID----------NISLANPGMSVE 113
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
+V A + A +F +S+L E G+ G++
Sbjct: 114 KVIYAAKLAG---------AHDF------------------ISEL-RE-GYNTIVGEQGA 144
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
S G + R+++ + L+ +P +L+ DE T+ LD
Sbjct: 145 -GLSGGQRQRIAIARALVNNPKILIFDEATSALD 177
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 77.6 bits (190), Expect = 7e-15
Identities = 90/693 (12%), Positives = 187/693 (26%), Gaps = 224/693 (32%)
Query: 1 MDVTTTTTNLR-SSFFSTLQPRFTPFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKSI 59
MD T + S + F K + + ++ E I
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMP------KSILS------KEEIDHI 54
Query: 60 AKAQSDVES---LF-------SSSADEF----ENKKYS----------NKQSNTGASSIS 95
++ V LF +F Y + S I
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 96 SGVKLENISKSY--------KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147
+L N ++ + + L+ E++ + V + GV G+GKT + +
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-VALDVCLS 173
Query: 148 EP------------DSGNVIKAKSNMKI--AFLSQEFEVSMSRTVREEFMSAFKEEME-I 192
+ N ++ +++ L Q + + T R + S K + I
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ---IDPNWTSRSDHSSNIKLRIHSI 230
Query: 193 AGKLER--VQKALESA---VDDM-DLMGRLLDEFD------LLQRKAQAVNLDTLDAKVS 240
+L R K E+ + ++ + + + F+ L R Q D L A +
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQN--AKAWNAFNLSCKILLTTRFKQVT--DFLSAATT 286
Query: 241 KLMP----ELGFTADDGDRLVASFSSGWQMRMSLGK----ILLQDPDLL-----LLDEPT 287
+ + T D+ L+ + + +L +P L + +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKY-----LDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 288 NHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY-VL 346
D W ++ + +I + L+ L E R + + V
Sbjct: 342 ATWD----NWK--HVNCDKLTTII----ESSLNVL----EPAEY---RKM---FDRLSVF 381
Query: 347 EKAAWIESQYAA--WEKQQREIEQTKDLINRLGAGANSGRASSAEKKLER-------LQE 397
+A I + + W + ++N+L + S EK+ + +
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVM--VVVNKL------HKYSLVEKQPKESTISIPSIYL 433
Query: 398 EEQIEKPFQRKQMKIRFPERGRSGRSVVT---IKNLEFGY---------------EDRLL 439
E +++ + + ++ + I Y E L
Sbjct: 434 ELKVKLE-NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 440 FNRANLT---IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN 496
F L +E+ K ++L + L+ + Y N
Sbjct: 493 FRMVFLDFRFLEQ--KIRHDSTAWNASGSILNTLQQLKFYK-------------PYICDN 537
Query: 497 QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK 556
+ + ++ I
Sbjct: 538 ----------------DPKYERLVNAIL-------------------------------D 550
Query: 557 FMVKPSTLLVLDEPTNHLDI----PSKEMLEEA 585
F+ K L+ + T+ L I + + EEA
Sbjct: 551 FLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.9 bits (170), Expect = 2e-12
Identities = 64/416 (15%), Positives = 116/416 (27%), Gaps = 133/416 (31%)
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLDLD---TIEWLEGYLGKQDVPMVIISHD-----R 316
M G+ Q D+L + E + D + + L K+++ +I+S D
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 317 AFLDQLCTKIVET-EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINR 375
L +K E + V NY ++ + E Q
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYK--------FL------MSPIKTEQRQP------ 105
Query: 376 LGAGANSGRASSAEKKLERLQEEEQIEKPFQ--RKQM--KIRFPERGRSGRSVVTIKNLE 431
S ++ +RL + Q+ + R Q K+R + L
Sbjct: 106 ------SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR--------------QAL- 144
Query: 432 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM---GLEKPRGGEVL---LGE 485
E R N+ I+ G G GK+ + + ++ ++ L
Sbjct: 145 --LELR---PAKNVLID--------GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 486 HNVLPNYFEQNQAEALDLDKTVLETV-AEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLL 544
N E Q +D + RI I+ LL
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-------------AELRRLL 238
Query: 545 SGGEKARLAFCKFMVKPSTLLVLD-----EPTNHLDIPSKEMLEEAISEYKGTVITVSHD 599
K + LLVL + N ++ K +L + T
Sbjct: 239 -----------KSKPYENCLLVLLNVQNAKAWNAFNLSCK-IL----------LTT---- 272
Query: 600 RYFVKQIVNRVVEVKGSN--LQDYAGDYNQVQSL-----WF------LTIEVSKIN 642
R+ KQ+ + + ++ L ++ + + L EV N
Sbjct: 273 RF--KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 8e-15
Identities = 56/201 (27%), Positives = 90/201 (44%), Gaps = 36/201 (17%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503
NL I+ GE +I+GP+G GKST+L +I L+KP GEV + N + ++ +
Sbjct: 25 NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKT--NDLDDDELTKIRR 82
Query: 504 DK--------------TVLETV---------AEAAEDWRIDDIKGLLGRCNFKADMLDRK 540
DK T LE V + + R L + + K
Sbjct: 83 DKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK 142
Query: 541 VSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNHLDIPSK------EMLEEAISEYKGTV 593
+ LSGG++ R+A + + P +L D+PT LD SK ++L++ E TV
Sbjct: 143 PNQLSGGQQQRVAIARALANNPPIILA-DQPTWALD--SKTGEKIMQLLKKLNEEDGKTV 199
Query: 594 ITVSHDRYFVKQIVNRVVEVK 614
+ V+HD V + R++ +K
Sbjct: 200 VVVTHDIN-VARFGERIIYLK 219
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 9e-09
Identities = 63/247 (25%), Positives = 105/247 (42%), Gaps = 70/247 (28%)
Query: 98 VKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG- 152
VKL+N++K+YK + LK+V +K+GE V ++G +G+GK+T L II ++P G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 153 ------NVIKAKS-------NMKIAFLSQEFEVSMSRTVRE--EFMSAFKEEMEIAGKLE 197
KI F+ Q+F + T E E FK ++G+ E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE-E 120
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP-ELGFTADDGDRL 256
R ++ALE L +L +R + P +L
Sbjct: 121 RRKRALE-----------CLKMAELEER-------------FANHKPNQL---------- 146
Query: 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPM 309
S G Q R+++ + L +P ++L D+PT LD + ++ L GK +
Sbjct: 147 ----SGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKT---V 199
Query: 310 VIISHDR 316
V+++HD
Sbjct: 200 VVVTHDI 206
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 9e-15
Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 41/207 (19%)
Query: 425 VTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
V +++ F Y + + T+ G+ TA++GPNG GKST+ L+ L +P GG+V
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 482 LLGEHNVL-----------------PNYF----EQNQAEALDLDKTVLETVAEAAEDWRI 520
LL ++ P F +N A L T +E + A +
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPT-MEEITAVAMESGA 135
Query: 521 DD-IKGLLGRCNFKADMLDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575
D I G D +V + LSGG++ +A + +++ LL+LD T+ LD
Sbjct: 136 HDFISGF-------PQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALD 188
Query: 576 IPSKEMLEEAI---SEYKG-TVITVSH 598
++ ++ + E+ TV+ ++
Sbjct: 189 AGNQLRVQRLLYESPEWASRTVLLITQ 215
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 7e-08
Identities = 47/219 (21%), Positives = 84/219 (38%), Gaps = 72/219 (32%)
Query: 98 VKLENISKSY---KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE---EPDS 151
VK +++S +Y V VL+ +T+ + G+ LVG NG+GK+T + A + +P
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKST---VAALLQNLYQPTG 73
Query: 152 GNV------IKAKSNMK-----IAFLSQE---FEVSMSRTVRE-----EFMSAFKEEMEI 192
G V + + + +A + QE F R+ RE + EE+
Sbjct: 74 GKVLLDGEPLV-QYDHHYLHTQVAAVGQEPLLF----GRSFRENIAYGLTRTPTMEEITA 128
Query: 193 AGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252
+ A + +S P+ G+ +
Sbjct: 129 VAME------------------------------SGAHDF------ISGF-PQ-GYDTEV 150
Query: 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
G+ S G + ++L + L++ P LL+LD T+ LD
Sbjct: 151 GETGN-QLSGGQRQAVALARALIRKPRLLILDNATSALD 188
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 1e-14
Identities = 59/213 (27%), Positives = 98/213 (46%), Gaps = 55/213 (25%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V + ++ + + +L ++ GE ++GP+GCGK+T L++I GLE+P G++ +G
Sbjct: 4 VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIG 63
Query: 485 EHNV--------LP-----------NY-------FEQNQAEALDLDKT----VLETVAEA 514
+ V +P +Y N A L L K + + V E
Sbjct: 64 DKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREV 123
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNH 573
AE + GL ++L+RK LSGG++ R+A + +V KP L +DEP ++
Sbjct: 124 AE------LLGL-------TELLNRKPRELSGGQRQRVALGRAIVRKPQVFL-MDEPLSN 169
Query: 574 LDIPSK---EMLEEAIS----EYKGTVITVSHD 599
LD +K M E + + T I V+HD
Sbjct: 170 LD--AKLRVRMRAE-LKKLQRQLGVTTIYVTHD 199
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 6e-12
Identities = 27/59 (45%), Positives = 42/59 (71%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+GV+L ++ K + VT +++++ EVK GE + L+G +G GKTT LR+IAG EEP G +
Sbjct: 2 AGVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 72.5 bits (179), Expect = 1e-14
Identities = 54/233 (23%), Positives = 103/233 (44%), Gaps = 63/233 (27%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ +N++ + +L++++GE +IIG +G GKSTLL ++ L+ P G+V
Sbjct: 3 EILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVF 62
Query: 483 L-GE------------------------HNVLPN------------YFEQNQAEALDLDK 505
L G+ H ++P + + EA + +
Sbjct: 63 LEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGE 122
Query: 506 TVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTL 564
+L + GL + L RK LSGGE+ R+A + + +P L
Sbjct: 123 YLLSEL-------------GLGDK-------LSRKPYELSGGEQQRVAIARALANEPILL 162
Query: 565 LVLDEPTNHLD-IPSKEMLE--EAISEYKGTVITVSHDRYFVKQIVNRVVEVK 614
DEPT +LD +K +++ I+E +++ V+H+R + ++ +R +E+K
Sbjct: 163 FA-DEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LAELTHRTLEMK 213
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 1e-12
Identities = 57/238 (23%), Positives = 93/238 (39%), Gaps = 61/238 (25%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG----- 152
++ ENI K +G +LK ++ VKKGE V ++G +G+GK+T L I+ + P G
Sbjct: 5 LRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLE 64
Query: 153 --NVIKAKS-------NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG--KLERVQK 201
V N K+ F+ Q + T E + M G K E ++
Sbjct: 65 GKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVP----MLKMGKPKKEAKER 120
Query: 202 ALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFS 261
LL E L + L K +L S
Sbjct: 121 GEY-----------LLSELGLGDK---------LSRKPYEL------------------S 142
Query: 262 SGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT---IEWLEGYLGKQDVPMVIISHDR 316
G Q R+++ + L +P LL DEPT +LD + + + + +V+++H+R
Sbjct: 143 GGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER 200
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 1e-14
Identities = 59/237 (24%), Positives = 95/237 (40%), Gaps = 43/237 (18%)
Query: 406 QRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKST 465
RG ++ + L+ + + N+ I GE +IGP+G GKST
Sbjct: 6 HHHHHSSGLVPRGSHMLQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKST 65
Query: 466 LLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEA----------LDLDKTVLETVAEA- 514
L+ + LE GE+++ N+ N+ L TVL + A
Sbjct: 66 FLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAP 125
Query: 515 ----------AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLA----FCKFMVK 560
AE ++ LL + D LSGG+ R+A M +
Sbjct: 126 MKVRKWPREKAEAKAME----LLDKVGL-KDKAHAYPDSLSGGQAQRVAIARALA--M-E 177
Query: 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEYKG------TVITVSHDRYFVKQIVNRVV 611
P +L DEPT+ LD P EM+ E +S K T++ V+H+ F +++ +RV+
Sbjct: 178 PKIML-FDEPTSALD-P--EMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVL 230
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 5e-13
Identities = 60/273 (21%), Positives = 105/273 (38%), Gaps = 82/273 (30%)
Query: 89 TGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148
S + + + + KS+ + VLK + +++GE V ++G +G+GK+T LR + E+
Sbjct: 16 PRGSHMLQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED 75
Query: 149 PDSGNVI--------------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194
D G +I K + + + F Q F + TV A M++
Sbjct: 76 FDEGEIIIDGINLKAKDTNLNKVREEVGMVF--QRFNLFPHMTVLNNITLA---PMKVRK 130
Query: 195 --KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252
+ + KA+E LL + V L D
Sbjct: 131 WPREKAEAKAME-----------------LLDK----VGL-----------------KDK 152
Query: 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQ 305
S S G R+++ + L +P ++L DEPT+ LD L ++ L +
Sbjct: 153 AHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMK----QLANE 208
Query: 306 DVPMVIISH---------DR-AFLDQLCTKIVE 328
+ MV+++H DR F+D I+E
Sbjct: 209 GMTMVVVTHEMGFAREVGDRVLFMDG--GYIIE 239
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 1e-14
Identities = 55/211 (26%), Positives = 92/211 (43%), Gaps = 55/211 (26%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503
+L G+ +IIG +G GKST L+ I LEKP G +++ N+ + Q + D
Sbjct: 26 SLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 85
Query: 504 D---------------------KTVLETVAEAAEDWRIDDIKGLLGR----CNFKADMLD 538
+ TVLE V EA I+ +LG +A
Sbjct: 86 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAP-------IQ-VLGLSKHDARERALKYL 137
Query: 539 RKVSL-----------LSGGEKARLAFCKFM-VKPSTLLVLDEPTNHLDIPSKEMLEEAI 586
KV + LSGG++ R++ + + ++P LL DEPT+ LD P E++ E +
Sbjct: 138 AKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLL-FDEPTSALD-P--ELVGEVL 193
Query: 587 SEYKG------TVITVSHDRYFVKQIVNRVV 611
+ T++ V+H+ F + + + V+
Sbjct: 194 RIMQQLAEEGKTMVVVTHEMGFARHVSSHVI 224
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 8e-12
Identities = 57/246 (23%), Positives = 104/246 (42%), Gaps = 62/246 (25%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG----- 152
+ + ++ K Y G VLK V+ + + G+ + ++G +G+GK+T LR I E+P G
Sbjct: 7 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVN 66
Query: 153 --NVIKAKSNMKIAFLSQEFEVSMSRT----VREEF-----MSAFKEEMEIAGKLERVQK 201
N+ + ++ + ++ + RT V + F M+ + ME ++ + K
Sbjct: 67 GQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSK 126
Query: 202 --ALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259
A E A+ L + V +D + P
Sbjct: 127 HDARERALK-------------YLAK----VGID---ERAQGKYP-------------VH 153
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVII 312
S G Q R+S+ + L +PD+LL DEPT+ LD L ++ L ++ MV++
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQ----QLAEEGKTMVVV 209
Query: 313 SHDRAF 318
+H+ F
Sbjct: 210 THEMGF 215
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 4e-14
Identities = 51/246 (20%), Positives = 103/246 (41%), Gaps = 54/246 (21%)
Query: 386 SSAEKKLERLQEEEQIE---KPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE--DRLLF 440
++ + + E + + +R ++ K++ F Y+ ++
Sbjct: 313 AACQTLFGLMDLETERDNGKYEAERVNGEVDV-------------KDVTFTYQGKEKPAL 359
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----LPNYFEQ- 495
+ + +I +G+ A++G +G GKST+ L G + L H+V L N
Sbjct: 360 SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419
Query: 496 ----------------NQAEALDLDKTVLETVAEAAEDWRIDD-IKGLLGRCNFKADMLD 538
N A A + + T E + +AA + I+ + LD
Sbjct: 420 ALVSQNVHLFNDTIANNIAYAAEGEYT-REQIEQAARQAHAMEFIENM-------PQGLD 471
Query: 539 RKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY-KG-T 592
+ + LSGG++ R+A + +++ + +L+LDE T+ LD S+ ++ A+ E K T
Sbjct: 472 TVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKT 531
Query: 593 VITVSH 598
V+ ++H
Sbjct: 532 VLVIAH 537
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 6e-08
Identities = 55/257 (21%), Positives = 109/257 (42%), Gaps = 59/257 (22%)
Query: 57 KSIAKAQSDVESLFSSSADEFE--NKKYSNKQSNTGASSISSGVKLENISKSYKG--VTV 112
K++ S+ + ++ F + + A ++ V +++++ +Y+G
Sbjct: 299 KALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKEKPA 358
Query: 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------IKAKS-NMK 162
L V++ + +G+ V LVG +G+GK+T + + DSG++ K +
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418
Query: 163 IAFLSQE---FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
A +SQ F + T+ A+ E E E++++A A E
Sbjct: 419 FALVSQNVHLF----NDTIANNI--AYAAEGEYT--REQIEQAARQA---------HAME 461
Query: 220 F--DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
F ++ Q LDT +G ++G L S G + R+++ + LL+D
Sbjct: 462 FIENMPQ------GLDT----------VIG---ENGTSL----SGGQRQRVAIARALLRD 498
Query: 278 PDLLLLDEPTNHLDLDT 294
+L+LDE T+ LD ++
Sbjct: 499 APVLILDEATSALDTES 515
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 1e-13
Identities = 56/246 (22%), Positives = 101/246 (41%), Gaps = 52/246 (21%)
Query: 385 ASSAEKKLERLQEEEQI---EKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE--DRLL 439
++ + L E++ ++ R + F +N+ F Y +
Sbjct: 312 MAACQTLFAILDSEQEKDEGKRVIDRATGDLEF-------------RNVTFTYPGREVPA 358
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----LPNYFEQ 495
NL I G+ A++G +G GKST+ LI G +L+ H++ L + Q
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 418
Query: 496 ----NQAEAL------------DLDKTVLETVAEAAEDWRIDD-IKGLLGRCNFKADMLD 538
+Q L ++ E + EAA D I + + LD
Sbjct: 419 VALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKM-------DNGLD 471
Query: 539 RKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY-KG-T 592
+ LLSGG++ R+A + +++ S +L+LDE T+ LD S+ ++ A+ E K T
Sbjct: 472 TIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRT 531
Query: 593 VITVSH 598
+ ++H
Sbjct: 532 SLVIAH 537
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 47/218 (21%), Positives = 90/218 (41%), Gaps = 65/218 (29%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
++ N++ +Y G V L+++ ++ G+ V LVG +G+GK+T +I + D G++
Sbjct: 342 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 401
Query: 155 --------IKAKS-NMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIA-GKL----- 196
S ++A +SQ F + TV IA +
Sbjct: 402 MDGHDLREYTLASLRNQVALVSQNVHLF----NDTVAN----------NIAYARTEEYSR 447
Query: 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256
E++++A A +F ++K+ G G+
Sbjct: 448 EQIEEAARMA---------YAMDF------------------INKM-DN-GLDTIIGENG 478
Query: 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
V S G + R+++ + LL+D +L+LDE T+ LD ++
Sbjct: 479 V-LLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 69.4 bits (171), Expect = 2e-13
Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 28/167 (16%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
+++L Y +L + RG+ +IG NG GK+T L I GL + + G+++
Sbjct: 8 EVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNG 67
Query: 486 HNVLPNYFEQNQAEALDLDKTVLE--------TVAE------------AAEDWRIDDIKG 525
++ + L V E TV E ++ I
Sbjct: 68 QDITNKPAHVINRMGIAL---VPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFS 124
Query: 526 LLGRCNFKADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPT 571
L R + L + LSGGE+ LA + M +P LL++DEP+
Sbjct: 125 LFPRL---KERLKQLGGTLSGGEQQMLAIGRALMSRPK-LLMMDEPS 167
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 67.5 bits (166), Expect = 8e-13
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+++++ Y + +K + +V +G+ V L+G NGAGKTT L IAG G +
Sbjct: 8 EVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 2e-13
Identities = 48/214 (22%), Positives = 86/214 (40%), Gaps = 59/214 (27%)
Query: 425 VTIKNLEFGYE---DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR---- 477
+ ++ F Y + N I G A++G G GKST+ KL+ R
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLL-----YRFYDA 72
Query: 478 GGEVLLGEHNVLPNYFEQNQAEALDLDK--------TVL------------------ETV 511
G++ +G NV N+ + T+L E V
Sbjct: 73 EGDIKIGGKNV-------NKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEV 125
Query: 512 AEAAEDWRIDD-IKGLLGRCNFKADMLDRKV----SLLSGGEKARLAFCKFMVKPSTLLV 566
+A + ++ D I+ L D V LSGGE+ R+A + ++K +++
Sbjct: 126 IKATKSAQLYDFIEAL-------PKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVI 178
Query: 567 LDEPTNHLDIPSKEMLEEAISEY-KG-TVITVSH 598
DE T+ LD ++ + ++A+ + K T+I ++H
Sbjct: 179 FDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAH 212
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 5e-07
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 87 SNTGASSISSG-VKLENISKSY---KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRI 142
S T ++ +++ SY LK + + + G LVG G+GK+T ++
Sbjct: 6 SLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKL 65
Query: 143 I 143
+
Sbjct: 66 L 66
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 3e-13
Identities = 52/206 (25%), Positives = 87/206 (42%), Gaps = 40/206 (19%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR----G 478
S + I++L + + NL + +GE A++GPNG GKSTL K++ G P
Sbjct: 2 SQLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG--DPEYTVER 59
Query: 479 GEVLLGEHNVLPNYFEQNQAEALDLD----------------KTVLETVAEAAEDWR--I 520
GE+LL N+L ++ + L L + L+
Sbjct: 60 GEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFW 119
Query: 521 DDIKGLLGRCNFKADMLDRKVSL-LSGGEKAR-----LAFCKFMVKPSTLLVLDEPTNHL 574
+K L ++ L R ++ SGGEK R L +++P+ VLDE + L
Sbjct: 120 TKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLL----VLEPT-YAVLDETDSGL 174
Query: 575 DIPSKEMLEEAISEYKGT-----VIT 595
DI + +++ ++ +G VIT
Sbjct: 175 DIDALKVVARGVNAMRGPNFGALVIT 200
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 4e-13
Identities = 65/262 (24%), Positives = 110/262 (41%), Gaps = 50/262 (19%)
Query: 366 IEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVV 425
+ + L +S ++ + + E+ I+ + ++ ++GR +
Sbjct: 294 LRRLVASFTTLTQSF-----ASMDRVFQLIDEDYDIKNGVGAQPIE---IKQGR-----I 340
Query: 426 TIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
I ++ F Y D + NL+IE+GE A +G +G GKSTL+ LI G++L+
Sbjct: 341 DIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILI 400
Query: 484 GEHNV----LPNYFEQ----NQAEAL------------DLDKTVLETVAEAAEDWRIDD- 522
HN+ + Q Q L T E V EAA+ D
Sbjct: 401 DGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTAT-DEEVVEAAKMANAHDF 459
Query: 523 IKGLLGRCNFKADMLDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 578
I L D +V LSGG+K RL+ + + +L+LDE T+ LD+ S
Sbjct: 460 IMNL-------PQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 512
Query: 579 KEMLEEAISEY-KG-TVITVSH 598
+ +++EA+ K T + V+H
Sbjct: 513 ESIIQEALDVLSKDRTTLIVAH 534
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 1e-07
Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 64/217 (29%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
+ ++++S Y +LKD+ ++KGE V VG++G GK+T + +I + SG +
Sbjct: 340 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 399
Query: 155 --------IKAKS-NMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIA-GKL----E 197
S +I + Q+ F S TV+E I G+ E
Sbjct: 400 IDGHNIKDFLTGSLRNQIGLVQQDNILF----SDTVKE----------NILLGRPTATDE 445
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
V +A A+ N + L P+ G+ + G+R V
Sbjct: 446 EVVEA------------------------AKMANAHDF---IMNL-PQ-GYDTEVGERGV 476
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
S G + R+S+ +I L +P +L+LDE T+ LDL++
Sbjct: 477 -KLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 512
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 5e-13
Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 39/176 (22%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V ++N+ + + ++ NL I GE +GP+GCGKSTLL++I GLE G++ +G
Sbjct: 4 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 63
Query: 485 EHNV--LP-----------NY-------FEQNQAEALDLDKT----VLETVAEAAEDWRI 520
E + P +Y +N + L L + + V + AE
Sbjct: 64 EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE---- 119
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNHLD 575
+ L A +LDRK LSGG++ R+A + +V +PS L LDEP ++LD
Sbjct: 120 --VLQL-------AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL-LDEPLSNLD 165
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 5e-12
Identities = 25/59 (42%), Positives = 41/59 (69%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+ V+L+N++K++ V V KD+ ++ +GE V VG +G GK+T LR+IAG E SG++
Sbjct: 2 ASVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 60
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 2e-12
Identities = 51/226 (22%), Positives = 90/226 (39%), Gaps = 44/226 (19%)
Query: 407 RKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTL 466
G +++IK+L ED+ + +L + GE AI+GPNG GKSTL
Sbjct: 3 SSHHHHHSSGLVPRGSHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTL 62
Query: 467 LKLIMGLEKPR----GGEVLLGEHNVLPNYFEQNQAEALDLD----------------KT 506
+ G + GG V ++L E E + + +T
Sbjct: 63 SATLAG--REDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQT 120
Query: 507 VLETVAEAAEDWRID------DIKGLLGRCNFKADMLDRKVSL-LSGGEKAR-----LAF 554
L V +D ++ + D+L R V++ SGGEK R +A
Sbjct: 121 ALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA- 179
Query: 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGT-----VIT 595
+++P L +LDE + LDI + +++ + ++ + ++T
Sbjct: 180 ---VLEPE-LCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVT 221
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 8e-12
Identities = 60/247 (24%), Positives = 104/247 (42%), Gaps = 52/247 (21%)
Query: 384 RAS-SAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE--DRLLF 440
RAS SA++ LE L E+ IE+ + V+ +N+EF Y +
Sbjct: 308 RASASAKRVLEVLNEKPAIEEADN--------ALALPNVEGSVSFENVEFRYFENTDPVL 359
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAE- 499
+ N +++ G A++G G GKSTL+ LI L P G V + E +V +
Sbjct: 360 SGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVR----TVKLKDL 415
Query: 500 ----ALDLDKTVL------------------ETVAEAAEDWRIDD-IKGLLGRCNFKADM 536
+ +TVL + + EAA+ +I D I +
Sbjct: 416 RGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIIS-------LPEG 468
Query: 537 LDRKVSL----LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG- 591
D +V SGG+K RL+ + +VK +L+LD+ T+ +D +++ + + + Y
Sbjct: 469 YDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKG 528
Query: 592 -TVITVS 597
T ++
Sbjct: 529 CTTFIIT 535
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 4e-04
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 98 VKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
V EN+ Y T VL V + VK G V ++G G+GK+T + +I +P+ G V
Sbjct: 342 VSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRV 400
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 1e-11
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 14/120 (11%)
Query: 373 INRLGAGAN---SGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKN 429
+N L N AS AE+ E L EE+ + P + ++R G + KN
Sbjct: 310 LNELSNQFNMIQMALAS-AERIFEILDLEEEKDDPDAVELREVR-------GE--IEFKN 359
Query: 430 LEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
+ F Y + + + I+ G+K A++GP G GK+T++ L+M G++L+ ++
Sbjct: 360 VWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDI 419
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 8e-07
Identities = 21/42 (50%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTT 138
++ +N+ SY K VLKD+T+ +K G+KV LVG G+GKTT
Sbjct: 355 IEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTT 396
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 40/209 (19%), Positives = 75/209 (35%), Gaps = 50/209 (23%)
Query: 98 VKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ +++++ Y G +L+++++ + G++VGL+G G+GK+T L G +
Sbjct: 20 MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT-EGEIQ 78
Query: 156 KAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
+ + Q+ S T R+ + + + + K +
Sbjct: 79 IDGVSWDSITLEQWRKAFGVIPQK-VFIFSGTFRKN-LDPNAAHSD-----QEIWKVADE 131
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
L + K LD + D G S G +
Sbjct: 132 V--------GLRSVIEQFPGK--------LDFVLV----------DGGC----VLSHGHK 161
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
M L + +L +LLLDEP+ HLD T
Sbjct: 162 QLMCLARSVLSKAKILLLDEPSAHLDPVT 190
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 8e-10
Identities = 45/212 (21%), Positives = 81/212 (38%), Gaps = 42/212 (19%)
Query: 415 PERGRSGRSVVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472
P G+ +T+K+L Y + + +I G++ ++G G GKSTLL +
Sbjct: 15 PSGGQ-----MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR 69
Query: 473 LEKPRGGEVL-------LGEHN------VLPNYFEQNQAEAL-------DLDKTVLETVA 512
L G + + V+P Q + +LD +
Sbjct: 70 LLNTEGEIQIDGVSWDSITLEQWRKAFGVIP------QKVFIFSGTFRKNLDPNAAHSDQ 123
Query: 513 EAAEDWRIDDIKGLLGRCNFKADMLDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLD 568
E W++ D GL LD + +LS G K + + ++ + +L+LD
Sbjct: 124 EI---WKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLD 180
Query: 569 EPTNHLDIPSKEMLEEAI-SEYKG-TVITVSH 598
EP+ HLD + +++ + + TVI
Sbjct: 181 EPSAHLDPVTYQIIRRTLKQAFADCTVILCEA 212
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 5e-10
Identities = 50/239 (20%), Positives = 100/239 (41%), Gaps = 60/239 (25%)
Query: 425 VTIKNLEFGYEDRLLF--NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
V ++N+ +E+ N IERG+ A+ G G GK++LL +IMG +P G++
Sbjct: 7 VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 66
Query: 483 LG-----------------EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKG 525
+ N++ F D+ +V +A
Sbjct: 67 HSGRISFCSQFSWIMPGTIKENII---FGV------SYDEYRYRSVIKA----------- 106
Query: 526 LLGRCNFKAD--ML---------DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
C + D + ++ LSGG++AR++ + + K + L +LD P +L
Sbjct: 107 ----CQLEEDISKFAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYL 161
Query: 575 DI-PSKEMLEEAISEY-KG-TVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630
D+ KE+ E + + T I V+ +K+ ++++ + + Y G ++++Q+
Sbjct: 162 DVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK-ADKILILHEGSSYFY-GTFSELQN 218
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 1e-08
Identities = 30/91 (32%), Positives = 56/91 (61%), Gaps = 7/91 (7%)
Query: 93 SISSG-VKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP 149
S+++ V +EN++ + G VLKD+ +++++G+ + + G GAGKT+ L +I G+ EP
Sbjct: 1 SLTTTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP 60
Query: 150 DSGNVIKAKSNMKIAFLSQEFEVSMSRTVRE 180
G + K + +I+F SQ + M T++E
Sbjct: 61 SEGKI---KHSGRISFCSQFSWI-MPGTIKE 87
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 1e-08
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 537 LDRKVSLLSGGEKA------RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK 590
+R ++ LSGGE+ RLA ++ +LL+LDEPT +LD + L + Y
Sbjct: 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL 301
Query: 591 ---GTVITVSHDRYFVKQIVNRVVEVK 614
VI VSHD + V+ +
Sbjct: 302 KKIPQVILVSHDEELKD-AADHVIRIS 327
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 3e-07
Identities = 32/180 (17%), Positives = 67/180 (37%), Gaps = 12/180 (6%)
Query: 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQR 225
+ + + T ++ +E+V+K A + + + +
Sbjct: 157 VREVLNLDKFETAYKKLSELKGGSGGTEELIEKVKKYKALAREAALSK--IGELASEIFA 214
Query: 226 KAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM------RMSLGKILLQDPD 279
+ + + + L + +R + S G ++ R+++ L +
Sbjct: 215 EFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEIS 274
Query: 280 LLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI-ISHDRAFLDQLCTKI-VETEMGVSR 335
LL+LDEPT +LD + L + + + +P VI +SHD D I + E G S+
Sbjct: 275 LLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLENGSSK 334
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 1e-08
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 537 LDRKVSLLSGGEKAR------LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK 590
+R ++ LSGGE+ LA ++ +LL+LDEPT +LD + L + Y
Sbjct: 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL 110
Query: 591 G---TVITVSHDRYFVK 604
VI VSHD
Sbjct: 111 KKIPQVILVSHDEELKD 127
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 2e-08
Identities = 50/242 (20%), Positives = 94/242 (38%), Gaps = 64/242 (26%)
Query: 425 VTIKNLEFGYEDRLLF--NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+T++N F + N +I G A++G GCGKS+LL ++ G V
Sbjct: 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA 63
Query: 483 LG-----------------EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKG 525
+ N+L F L++ +V +A
Sbjct: 64 IKGSVAYVPQQAWIQNDSLRENIL---FGC------QLEEPYYRSVIQA----------- 103
Query: 526 LLGRCNFKAD--ML---------DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
C D +L ++ V+ LSGG+K R++ + + + + + D+P + +
Sbjct: 104 ----CALLPDLEILPSGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAV 158
Query: 575 DI-PSKEMLEEAISEYKG-----TVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQV 628
D K + E I KG T I V+H ++ Q V+ ++ + G + + G Y ++
Sbjct: 159 DAHVGKHIFENVIGP-KGMLKNKTRILVTHSMSYLPQ-VDVIIVMSGGKISE-MGSYQEL 215
Query: 629 QS 630
+
Sbjct: 216 LA 217
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 2e-06
Identities = 21/109 (19%), Positives = 47/109 (43%), Gaps = 13/109 (11%)
Query: 98 VKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ + N + ++ L +T+ + +G V +VG G GK++ L + + + G+V
Sbjct: 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV- 62
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREE--FMSAFKEEMEIAGKLERVQKA 202
+A++ Q+ + + ++RE F +E V +A
Sbjct: 63 --AIKGSVAYVPQQAWI-QNDSLRENILFGCQLEEP-----YYRSVIQA 103
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 3e-08
Identities = 54/277 (19%), Positives = 109/277 (39%), Gaps = 62/277 (22%)
Query: 386 SSAEKKLERLQEE-EQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRAN 444
S+ E +E + E+ K + + +G ++ N L N
Sbjct: 1 STTEVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVL--KDIN 58
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG-----------------EHN 487
IERG+ A+ G G GK++LL +IMG +P G++ + N
Sbjct: 59 FKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKEN 118
Query: 488 VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD--ML-------- 537
++ + D+ +V +A C + D
Sbjct: 119 II----------GVSYDEYRYRSVIKA---------------CQLEEDISKFAEKDNIVL 153
Query: 538 -DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI-PSKEMLEEAISEY-KG-TV 593
+ ++ LSGG++AR++ + + K + L +LD P +LD+ KE+ E + + T
Sbjct: 154 GEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 212
Query: 594 ITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630
I V+ +K+ ++++ + + Y G ++++Q+
Sbjct: 213 ILVTSKMEHLKK-ADKILILHEGSSYFY-GTFSELQN 247
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 7e-08
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 10/123 (8%)
Query: 62 AQSDVE----SLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVT 117
+ ++V + F +K +N S+ + N S VLKD+
Sbjct: 1 STTEVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGT--PVLKDIN 58
Query: 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177
+++++G+ + + G GAGKT+ L +I G+ EP G + K + +I+F SQ + M T
Sbjct: 59 FKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI---KHSGRISFCSQNSWI-MPGT 114
Query: 178 VRE 180
++E
Sbjct: 115 IKE 117
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 3e-06
Identities = 38/171 (22%), Positives = 68/171 (39%), Gaps = 14/171 (8%)
Query: 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238
R + MS ++E E K + L +++ L +K D
Sbjct: 196 RLKEMSNLEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLP 255
Query: 239 VSKL----MPELGFTADDGDRLVASFSSGWQMRMSLG-------KILLQDPDLLLLDEPT 287
S + E+ A +G + + S G Q+ ++L ++ + ++LDEPT
Sbjct: 256 YSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPT 315
Query: 288 NHLDLDTIEWLEGYLGK-QDVP-MVIISHDRAFLDQLCTKI-VETEMGVSR 335
+LD + L K + +P M+II+H R D I V+ + VS+
Sbjct: 316 VYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINVKKDGNVSK 366
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 538 DRKVSLLSGGEKARLAFC-------KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK 590
+ LSGGE+ +A + ++LDEPT +LD + L E + K
Sbjct: 275 VLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK 334
Query: 591 --GTVITVSHDRYFVKQIVNRVVEVK 614
+I ++H R + + + ++ VK
Sbjct: 335 SIPQMIIITHHREL-EDVADVIINVK 359
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 Length = 178 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 2e-05
Identities = 29/180 (16%), Positives = 55/180 (30%), Gaps = 31/180 (17%)
Query: 452 KTAIIGPNGCGKSTLL-KLIMGLEKPRGG----EVLLGEHNVLPNYFEQNQAEALDLDKT 506
K I G G GK+TL+ K++ L K G EV E +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGF-----------RII 50
Query: 507 VLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566
E + K L+G + A+ + +++
Sbjct: 51 TTEGKKKIFSSKFFTSKK-LVGSYGVNVQYFEE-----LAIPILERAYREAKKDRRKVII 104
Query: 567 LDE--PTNHLDIPSKEMLEEAISEYKGTVITVSHDRY---FVKQIVNR----VVEVKGSN 617
+DE ++++ + + + V+ R VK+I ++E+ N
Sbjct: 105 IDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPEN 164
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 645 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.97 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.96 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.96 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.96 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.95 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.95 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.95 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.95 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.95 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.93 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.92 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.91 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.91 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.91 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.91 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.9 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.9 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.9 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.89 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.88 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.87 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.87 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.86 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.86 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.86 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.85 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.84 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.84 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.84 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.83 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.83 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.83 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.82 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.81 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.81 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.81 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.81 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.8 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.8 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.8 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.8 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.8 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.8 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.8 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.79 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.78 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.78 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.77 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.77 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.77 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.76 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.76 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.76 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.75 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.75 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.75 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.75 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.75 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.73 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.73 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.73 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.73 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.73 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.72 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.72 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.72 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.72 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.71 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.71 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.71 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.69 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.69 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.69 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.69 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.69 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.67 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.65 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.64 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.63 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.62 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.62 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.61 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.61 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.61 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.61 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.61 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.6 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.6 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.59 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.57 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.57 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.56 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.54 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.53 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.52 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.52 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.52 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.52 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.5 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.5 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.47 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.46 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.46 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.45 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.45 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.43 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.43 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.43 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.42 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.39 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.38 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.38 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.37 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.37 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.36 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.35 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.34 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.34 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.34 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.34 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.33 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.3 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.3 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.29 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.29 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.28 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.26 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.25 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.25 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.25 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.22 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.22 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.21 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.21 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.21 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.21 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.21 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.2 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.2 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.19 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.18 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.18 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.16 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.15 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.15 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.14 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.14 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.13 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.12 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.1 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.1 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.1 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.09 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.09 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.06 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.03 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.03 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.01 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 99.0 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.0 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.98 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.96 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.95 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.94 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.94 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.93 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.92 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.92 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.91 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.91 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.89 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.86 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.85 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.82 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 98.76 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.71 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.7 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.69 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.69 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.68 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.66 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.66 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.65 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.65 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.62 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.61 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.61 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.61 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.56 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.56 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.55 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.53 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 98.51 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.51 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.48 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.48 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.47 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.45 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.43 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.42 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.41 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.4 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.38 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.38 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.38 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.32 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.31 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.3 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.3 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.28 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.26 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.24 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.23 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.23 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.22 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.21 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.2 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.2 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.2 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 98.17 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.15 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.15 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.14 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.07 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.06 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.05 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.05 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.05 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.05 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.01 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.01 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.96 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.94 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.94 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.94 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.92 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.92 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.91 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.9 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.9 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.89 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.88 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.87 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.84 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.83 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.82 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.8 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.79 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.78 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.77 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.77 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.76 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.76 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.75 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.74 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.73 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.73 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.73 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.72 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.72 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.69 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.67 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.67 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.67 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.65 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.64 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.64 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.62 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.61 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.58 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.57 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.55 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.53 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.52 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 97.52 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.51 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.5 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.5 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.49 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.48 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.46 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.45 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.45 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.43 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.4 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.4 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.37 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.33 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.3 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.3 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.3 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.28 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.27 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.26 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.22 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.21 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.21 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.2 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.17 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.17 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.14 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.13 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.11 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.1 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.09 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 97.08 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.08 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.07 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.05 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.04 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.04 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.04 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.02 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.01 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.96 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.92 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 96.9 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.9 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.89 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.89 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 96.87 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.84 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.83 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.82 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.81 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.8 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.77 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.76 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.76 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.76 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.76 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.76 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.75 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.74 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.73 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.73 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.73 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.69 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.68 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.66 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.66 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.66 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.64 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 96.63 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.61 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.59 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.54 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.5 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.5 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.49 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.48 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.48 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 96.43 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.43 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.4 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.39 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.37 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.36 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.33 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.32 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.3 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.29 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.26 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.25 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.24 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.24 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.23 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.22 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.16 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.14 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.14 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.13 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.04 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 96.03 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.0 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.96 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 95.95 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 95.94 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.93 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 95.9 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.86 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 95.85 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 95.81 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.8 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.8 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 95.78 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 95.78 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 95.76 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 95.73 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 95.71 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.69 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 95.68 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.67 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 95.67 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-77 Score=731.44 Aligned_cols=207 Identities=24% Similarity=0.433 Sum_probs=177.3
Q ss_pred CCCCcEEEEEeeeeeeCC---eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc-----
Q 006442 419 RSGRSVVTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP----- 490 (645)
Q Consensus 419 ~~~~~~i~~~~v~~~y~~---~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~----- 490 (645)
|+..+-|+++||+|+|++ .++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.+||.++..
T Consensus 1071 ~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~ 1150 (1321)
T 4f4c_A 1071 KKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEH 1150 (1321)
T ss_dssp CCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHH
T ss_pred CCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHH
Confidence 444556999999999974 369999999999999999999999999999999999999999999999998742
Q ss_pred -----chhccchhhcCCCCCCHHHHHHhhh--ccccHHHHHHHHhhcCCChhh-------hcc----CcCcCCHhHHHHH
Q 006442 491 -----NYFEQNQAEALDLDKTVLETVAEAA--EDWRIDDIKGLLGRCNFKADM-------LDR----KVSLLSGGEKARL 552 (645)
Q Consensus 491 -----~~~~q~~~~~l~~~~tv~e~v~~~~--~~~~~~~~~~~L~~~~l~~~~-------~~~----~~~~LSgGqkqrv 552 (645)
++++|+ ...++.|+++|+.++. ....++++.++++..++. +. .+. ...+||||||||+
T Consensus 1151 lR~~i~~V~Qd---p~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~-~~I~~Lp~GldT~vge~G~~LSgGQrQri 1226 (1321)
T 4f4c_A 1151 TRSQIAIVSQE---PTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIH-NFIAELPEGFETRVGDRGTQLSGGQKQRI 1226 (1321)
T ss_dssp HHTTEEEECSS---CCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCH-HHHHTSTTTTCSEETTTSCSSCHHHHHHH
T ss_pred HHhheEEECCC---CEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCCh-HHHHcCcCCCCCEecCCCcccCHHHHHHH
Confidence 345554 3446889999998763 345678888999888873 22 222 3357999999999
Q ss_pred HHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 553 AFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 553 ~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
||||||+++|+|||||||||+||+++.+.+++.|++. +.|+|+|+|+++++.+ ||||+||++|+|+++ |+++++++
T Consensus 1227 aiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~-aD~I~Vld~G~IvE~-Gth~eLl~ 1304 (1321)
T 4f4c_A 1227 AIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMN-ADCIAVVSNGTIIEK-GTHTQLMS 1304 (1321)
T ss_dssp HHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTT-CSEEEEESSSSEEEE-ECHHHHHH
T ss_pred HHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHh-CCEEEEEECCEEEEE-CCHHHHHh
Confidence 9999999999999999999999999999999999875 4599999999999987 999999999999974 88888875
Q ss_pred H
Q 006442 631 L 631 (645)
Q Consensus 631 ~ 631 (645)
.
T Consensus 1305 ~ 1305 (1321)
T 4f4c_A 1305 E 1305 (1321)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-76 Score=690.74 Aligned_cols=428 Identities=29% Similarity=0.492 Sum_probs=333.0
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHc-CCCCCccEEEEcCCCceEEEEeccC-ccCC
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG-QEEPDSGNVIKAKSNMKIAFLSQEF-EVSM 174 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G-~~~p~~G~I~~~~~~~~i~~v~Q~~-~~~~ 174 (645)
.|...|++++|+++.+|+|+||+|++|++++|+||||||||||+|+|+| .+ .|. .. ....+++|++|++ .+++
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i---~g~-~~-~~~~~~~~v~q~~~~~~~ 509 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV---DGF-PT-QEECRTVYVEHDIDGTHS 509 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS---TTC-CC-TTTSCEEETTCCCCCCCT
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCC-cc-ccceeEEEEccccccccc
Confidence 4777899999999999999999999999999999999999999999995 32 110 00 0123578999985 4557
Q ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCccccc
Q 006442 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (645)
Q Consensus 175 ~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~ 254 (645)
..||.+|+...+ .. . ++++.++++.+|+.....+
T Consensus 510 ~ltv~e~l~~~~-------------------------------------------~~--~-~~~v~~~L~~lgL~~~~~~ 543 (986)
T 2iw3_A 510 DTSVLDFVFESG-------------------------------------------VG--T-KEAIKDKLIEFGFTDEMIA 543 (986)
T ss_dssp TSBHHHHHHTTC-------------------------------------------SS--C-HHHHHHHHHHTTCCHHHHH
T ss_pred CCcHHHHHHHhh-------------------------------------------cC--H-HHHHHHHHHHcCCChhhhc
Confidence 789999874200 00 0 3456678888999656788
Q ss_pred ccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcCcee
Q 006442 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (645)
Q Consensus 255 ~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~i~~l~~G~~ 334 (645)
+++.+|||||||||+|||||+.+|+||||||||||||+.++++|.++|++.|+|||+||||++++..+||+|+++++|++
T Consensus 544 ~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~i 623 (986)
T 2iw3_A 544 MPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKL 623 (986)
T ss_dssp SBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCee
Confidence 99999999999999999999999999999999999999999999999977889999999999999999999999999998
Q ss_pred EEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhhcccccccceEEec
Q 006442 335 RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRF 414 (645)
Q Consensus 335 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~rl~~~~~~~~~~~~~~~~~~~ 414 (645)
..+.|+++++...... . ..... ... ....+.+
T Consensus 624 v~~~G~~~e~~~~~~~---------------~-------~~~~~----------------------l~~----~~~~~~~ 655 (986)
T 2iw3_A 624 RKYKGNFTEFVKKCPA---------------A-------KAYEE----------------------LSN----TDLEFKF 655 (986)
T ss_dssp EEEESCHHHHHHHCGG---------------G-------GGSSS----------------------TTT----CCCCCCC
T ss_pred ecCCCCHHHHHhhhHH---------------H-------HHHHh----------------------hhh----hhhhccc
Confidence 6678987765421100 0 00000 000 0000111
Q ss_pred cCC------CCCCCcEEEEEeeeeeeCC--eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECce
Q 006442 415 PER------GRSGRSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (645)
Q Consensus 415 p~~------~~~~~~~i~~~~v~~~y~~--~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~ 486 (645)
|.+ ...++++|+++|++++|++ +++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+++.
T Consensus 656 p~~~~~~~~~~~~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~ 735 (986)
T 2iw3_A 656 PEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN 735 (986)
T ss_dssp CCCCCCTTCCSTTSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT
T ss_pred cccccccccccCCCceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc
Confidence 111 1234678999999999975 67999999999999999999999999999999999999999999999863
Q ss_pred ecccchhccchhhc--CCCCCCHHHHHHhh--------------------------------------------------
Q 006442 487 NVLPNYFEQNQAEA--LDLDKTVLETVAEA-------------------------------------------------- 514 (645)
Q Consensus 487 ~~~~~~~~q~~~~~--l~~~~tv~e~v~~~-------------------------------------------------- 514 (645)
...+|+.|+.... ...+.|+.+++...
T Consensus 736 -~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~ 814 (986)
T 2iw3_A 736 -CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNT 814 (986)
T ss_dssp -CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTE
T ss_pred -cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhccc
Confidence 2344554442110 01112333222110
Q ss_pred ---------------------------------------------------------hccccHHHHHHHHhhcCCChhh-
Q 006442 515 ---------------------------------------------------------AEDWRIDDIKGLLGRCNFKADM- 536 (645)
Q Consensus 515 ---------------------------------------------------------~~~~~~~~~~~~L~~~~l~~~~- 536 (645)
.......++.+.|+.+|+..+.
T Consensus 815 ~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~ 894 (986)
T 2iw3_A 815 YEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIV 894 (986)
T ss_dssp EEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHH
T ss_pred chhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhh
Confidence 0001234578899999996544
Q ss_pred hccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhCCEEEEEeCC
Q 006442 537 LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGS 616 (645)
Q Consensus 537 ~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~~tvi~vsHd~~~i~~~~d~v~~l~~g 616 (645)
.++++.+|||||||||+|||||+.+|+||||||||+|||+.+...+.+.|+++++|||+||||++++..+|||+++|++|
T Consensus 895 ~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G 974 (986)
T 2iw3_A 895 SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDG 974 (986)
T ss_dssp HHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTT
T ss_pred cCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 58899999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred eEEeeCCC
Q 006442 617 NLQDYAGD 624 (645)
Q Consensus 617 ~i~~~~~~ 624 (645)
+++....+
T Consensus 975 ~Iv~~G~~ 982 (986)
T 2iw3_A 975 RMTPSGHN 982 (986)
T ss_dssp BCCC----
T ss_pred EEEEeCCc
Confidence 99754333
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-76 Score=660.83 Aligned_cols=432 Identities=24% Similarity=0.330 Sum_probs=327.8
Q ss_pred EEE-EeEEEEeCCe-eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEE---------EEcCC-------
Q 006442 98 VKL-ENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------IKAKS------- 159 (645)
Q Consensus 98 i~i-~nls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I---------~~~~~------- 159 (645)
.++ +|++|+|++. .+|+++| +|++||+++|+||||||||||+|+|+|+++|++|++ .+.|.
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 355 5999999876 4999999 999999999999999999999999999999999985 22322
Q ss_pred -----CceEEEEeccCccCC---CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCC
Q 006442 160 -----NMKIAFLSQEFEVSM---SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (645)
Q Consensus 160 -----~~~i~~v~Q~~~~~~---~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (645)
...+++++|.....+ ..|+.+++...
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~---------------------------------------------- 133 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA---------------------------------------------- 133 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH----------------------------------------------
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh----------------------------------------------
Confidence 135788888754322 13666654200
Q ss_pred hhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCe
Q 006442 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVP 308 (645)
Q Consensus 232 ~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~t 308 (645)
...+++.++++.+|+. ...++++.+|||||||||+|||||+.+|+|||||||||+||+.++.++.++|+ +.|+|
T Consensus 134 --~~~~~~~~~l~~lgl~-~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~t 210 (538)
T 1yqt_A 134 --DETGKLEEVVKALELE-NVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKS 210 (538)
T ss_dssp --CSSSCHHHHHHHTTCT-TTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred --hHHHHHHHHHHHcCCC-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCE
Confidence 0012355678888996 57899999999999999999999999999999999999999999999888774 35899
Q ss_pred EEEEecCHHHHHhhcCeEEEEcCcee--EEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHH
Q 006442 309 MVIISHDRAFLDQLCTKIVETEMGVS--RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRAS 386 (645)
Q Consensus 309 vIivsHd~~~l~~~~d~i~~l~~G~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 386 (645)
||+||||++++..+||+|++++++.. ..+...+.... .+. ....... ..
T Consensus 211 vi~vsHd~~~~~~~~dri~vl~~~~~~~~~~~~~~~~~~-------------------~~~---~~~~~~~----~~--- 261 (538)
T 1yqt_A 211 VLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRN-------------------GIN---EFLRGYL----KD--- 261 (538)
T ss_dssp EEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH-------------------HHH---HHHHTEE----TT---
T ss_pred EEEEeCCHHHHHHhCCEEEEEcCcccccccccchhhHHH-------------------HHH---HHhhhcc----ch---
Confidence 99999999999999999999976431 12223322100 000 0000000 00
Q ss_pred HHHHHHHHHHHhhhhcccccccceEEeccCCC--CCCCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHH
Q 006442 387 SAEKKLERLQEEEQIEKPFQRKQMKIRFPERG--RSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKS 464 (645)
Q Consensus 387 ~~~~~l~rl~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKS 464 (645)
...... .....+.++... ..++.+++++|+++.|++. .|+++||+|++||++||+||||||||
T Consensus 262 ------------~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKS 326 (538)
T 1yqt_A 262 ------------ENVRFR--PYEIKFTKTGERVEIERETLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKT 326 (538)
T ss_dssp ------------TTEECS--SSCCCCCCSSGGGSSCCCEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHH
T ss_pred ------------hhhccc--ccccccccCCcccccCCCeEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHH
Confidence 000000 000001111111 1356789999999999764 68999999999999999999999999
Q ss_pred HHHHHHHcCCCCCeeEEEECceecccchhccchhhcCCCCCCHHHHHHhh-hcc-ccHHHHHHHHhhcCCChhhhccCcC
Q 006442 465 TLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA-AED-WRIDDIKGLLGRCNFKADMLDRKVS 542 (645)
Q Consensus 465 TLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~-~~~-~~~~~~~~~L~~~~l~~~~~~~~~~ 542 (645)
||+++|+|+++|++|+|.+. ...+|++|+.. ..+..||.+++... ... ...+.+.++++.+++. +..++++.
T Consensus 327 TLlk~l~Gl~~p~~G~i~~~---~~i~~v~Q~~~--~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~ 400 (538)
T 1yqt_A 327 TFVKMLAGVEEPTEGKIEWD---LTVAYKPQYIK--ADYEGTVYELLSKIDASKLNSNFYKTELLKPLGII-DLYDREVN 400 (538)
T ss_dssp HHHHHHHTSSCCSBCCCCCC---CCEEEECSSCC--CCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCG-GGTTSBGG
T ss_pred HHHHHHhCCCCCCCeEEEEC---ceEEEEecCCc--CCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCh-hhhcCChh
Confidence 99999999999999999863 34678887643 34678998887653 111 2245578899999994 77899999
Q ss_pred cCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeC--C
Q 006442 543 LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKG--S 616 (645)
Q Consensus 543 ~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~--g 616 (645)
+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||||++|++ |
T Consensus 401 ~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~ 480 (538)
T 1yqt_A 401 ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPG 480 (538)
T ss_dssp GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETT
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 99999999999999999999999999999999999999999998764 67999999999999999999999985 6
Q ss_pred eEEeeCCChhHHHH
Q 006442 617 NLQDYAGDYNQVQS 630 (645)
Q Consensus 617 ~i~~~~~~~~~~~~ 630 (645)
++.. .|+.++...
T Consensus 481 ~~~~-~g~~~~~~~ 493 (538)
T 1yqt_A 481 KYGR-ALPPMGMRE 493 (538)
T ss_dssp TEEE-ECCCEEHHH
T ss_pred eEee-cCCHHHHHh
Confidence 6654 366665544
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-74 Score=703.43 Aligned_cols=203 Identities=25% Similarity=0.460 Sum_probs=170.3
Q ss_pred CcEEEEEeeeeeeCCe---eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---------
Q 006442 422 RSVVTIKNLEFGYEDR---LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~---~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------- 489 (645)
.+.|+++||+++|+++ ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1028 ~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 1107 (1284)
T 3g5u_A 1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107 (1284)
T ss_dssp SCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTT
T ss_pred CCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHh
Confidence 4569999999999753 6999999999999999999999999999999999999999999999998763
Q ss_pred -cchhccchhhcCCCCCCHHHHHHhhhc--cccHHHHHHHHhhcCCChhhh-----------ccCcCcCCHhHHHHHHHH
Q 006442 490 -PNYFEQNQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADML-----------DRKVSLLSGGEKARLAFC 555 (645)
Q Consensus 490 -~~~~~q~~~~~l~~~~tv~e~v~~~~~--~~~~~~~~~~L~~~~l~~~~~-----------~~~~~~LSgGqkqrv~lA 555 (645)
.+|++|+. ..++.|+.||+..+.. ....+++.+.++..++. +.. .....+|||||||||+||
T Consensus 1108 ~i~~v~Q~~---~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~-~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iA 1183 (1284)
T 3g5u_A 1108 QLGIVSQEP---ILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIH-QFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIA 1183 (1284)
T ss_dssp SCEEEESSC---CCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCH-HHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHH
T ss_pred ceEEECCCC---ccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcH-HHHHhCccccccccCCCCCccCHHHHHHHHHH
Confidence 24566653 3457899999987543 23455566666665552 222 233468999999999999
Q ss_pred HHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|||+++|+||||||||++||+.+++.+++.|++. +.|||+||||++++.. ||||++|++|++++ .|+++++++
T Consensus 1184 Ral~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~-~dri~vl~~G~i~~-~g~~~~l~~ 1258 (1284)
T 3g5u_A 1184 RALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQN-ADLIVVIQNGKVKE-HGTHQQLLA 1258 (1284)
T ss_dssp HHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGS-CSEEEEEETBEEEE-EECHHHHHH
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 9999999999999999999999999999999865 4599999999999966 99999999999986 478777764
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-75 Score=659.68 Aligned_cols=433 Identities=24% Similarity=0.331 Sum_probs=331.0
Q ss_pred cEEE--------EeEEEEeCCe-eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEE---------EEcC
Q 006442 97 GVKL--------ENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------IKAK 158 (645)
Q Consensus 97 ~i~i--------~nls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I---------~~~~ 158 (645)
+|++ +|++++|++. .+|+++| +|++||+++|+||||||||||+++|+|+++|++|++ .+.|
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G 161 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG 161 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTT
T ss_pred eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCC
Confidence 5888 8999999876 4999999 999999999999999999999999999999999985 2222
Q ss_pred C------------CceEEEEeccCccCC---CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHH
Q 006442 159 S------------NMKIAFLSQEFEVSM---SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLL 223 (645)
Q Consensus 159 ~------------~~~i~~v~Q~~~~~~---~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (645)
. ...+++++|.....+ ..||.||+...
T Consensus 162 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~-------------------------------------- 203 (607)
T 3bk7_A 162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV-------------------------------------- 203 (607)
T ss_dssp STHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT--------------------------------------
T ss_pred EehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh--------------------------------------
Confidence 2 124778888653322 23777765210
Q ss_pred HHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc
Q 006442 224 QRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (645)
Q Consensus 224 ~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~ 303 (645)
...+++.++++.+|+. +..++++.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+
T Consensus 204 ----------~~~~~~~~~L~~lgL~-~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~ 272 (607)
T 3bk7_A 204 ----------DEVGKFEEVVKELELE-NVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIR 272 (607)
T ss_dssp ----------CCSSCHHHHHHHTTCT-TGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHcCCC-chhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 0012345678888996 67899999999999999999999999999999999999999999999888775
Q ss_pred c---CCCeEEEEecCHHHHHhhcCeEEEEcCcee--EEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 006442 304 K---QDVPMVIISHDRAFLDQLCTKIVETEMGVS--RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGA 378 (645)
Q Consensus 304 ~---~g~tvIivsHd~~~l~~~~d~i~~l~~G~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (645)
+ .|+|||+||||++++..+||+|++++++.. ..+...+... . .+ ...+....
T Consensus 273 ~l~~~g~tvIivsHdl~~~~~~adri~vl~~~~~~~g~~~~~~~~~----~---------------~i---~~~~~~~~- 329 (607)
T 3bk7_A 273 RLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTR----N---------------GI---NEFLQGYL- 329 (607)
T ss_dssp HHHHTTCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECCCEEHH----H---------------HH---HHHHHTEE-
T ss_pred HHHhcCCEEEEEecChHHHHhhCCEEEEECCCccccceeccchhHH----H---------------HH---HHHHhhcc-
Confidence 3 589999999999999999999999986532 1122222110 0 00 00000000
Q ss_pred CCchhhHHHHHHHHHHHHHhhhhcccccccceEEeccCCC--CCCCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEE
Q 006442 379 GANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERG--RSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAII 456 (645)
Q Consensus 379 ~~~~~~~~~~~~~l~rl~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~ 456 (645)
.. ...... .....+.++.+. ..++.+++++|+++.|++. .|+++||+|++||++||+
T Consensus 330 ---~~---------------~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~ 388 (607)
T 3bk7_A 330 ---KD---------------ENVRFR--PYEIRFTKLSERVDVERETLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIV 388 (607)
T ss_dssp ---TT---------------TTEECC--SSCCCCCCSTTSCCCCCCEEEEECCEEEECSSC-EEEECCEEEETTCEEEEE
T ss_pred ---hh---------------hhhhcc--ccccccccCCCcccccCceEEEEeceEEEecce-EEEecccccCCCCEEEEE
Confidence 00 000000 000011111111 1346789999999999764 689999999999999999
Q ss_pred cCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCCCCCCHHHHHHhh-hcc-ccHHHHHHHHhhcCCCh
Q 006442 457 GPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA-AED-WRIDDIKGLLGRCNFKA 534 (645)
Q Consensus 457 G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~-~~~-~~~~~~~~~L~~~~l~~ 534 (645)
||||||||||+++|+|+++|++|+|.+. ...+|++|+. ...+..||.+++... ... ...+.+.++|+.+++.
T Consensus 389 G~NGsGKSTLlk~l~Gl~~p~~G~I~~~---~~i~~v~Q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~- 462 (607)
T 3bk7_A 389 GPNGIGKTTFVKMLAGVEEPTEGKVEWD---LTVAYKPQYI--KAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII- 462 (607)
T ss_dssp CCTTSSHHHHHHHHHTSSCCSBSCCCCC---CCEEEECSSC--CCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT-
T ss_pred CCCCCCHHHHHHHHhcCCCCCceEEEEe---eEEEEEecCc--cCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc-
Confidence 9999999999999999999999999873 3467888764 334678998887653 111 1234577889999995
Q ss_pred hhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEE
Q 006442 535 DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRV 610 (645)
Q Consensus 535 ~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v 610 (645)
+..++++.+|||||||||+|||||+++|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||||
T Consensus 463 ~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv 542 (607)
T 3bk7_A 463 DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL 542 (607)
T ss_dssp TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEE
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 6789999999999999999999999999999999999999999999999998864 569999999999999999999
Q ss_pred EEEeC--CeEEeeCCChhHHHH
Q 006442 611 VEVKG--SNLQDYAGDYNQVQS 630 (645)
Q Consensus 611 ~~l~~--g~i~~~~~~~~~~~~ 630 (645)
++|++ |++.. .|+.++...
T Consensus 543 ~vl~~~~g~~~~-~g~p~~~~~ 563 (607)
T 3bk7_A 543 IVFEGEPGRHGR-ALPPMGMRE 563 (607)
T ss_dssp EEEEEETTTEEE-ECCCEEHHH
T ss_pred EEEcCCcceEEe-cCCHHHHHh
Confidence 99985 66654 466665554
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-71 Score=617.56 Aligned_cols=420 Identities=24% Similarity=0.313 Sum_probs=304.0
Q ss_pred eEEEEeCCeeeeeeeeEE-EECCcEEEEECCCCccHHHHHHHHHcCCCCCccEE-----------EEcCCC---------
Q 006442 102 NISKSYKGVTVLKDVTWE-VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-----------IKAKSN--------- 160 (645)
Q Consensus 102 nls~~y~~~~vL~~vsl~-i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I-----------~~~~~~--------- 160 (645)
+.+.+|+.+. |+-..|. +++||++||+||||||||||+|+|+|+++|++|+| .+.+..
T Consensus 4 ~~~~~~~~~~-f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~ 82 (538)
T 3ozx_A 4 EVIHRYKVNG-FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELY 82 (538)
T ss_dssp CEEEESSTTS-CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHH
T ss_pred CCceecCCCc-eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHh
Confidence 5678886542 3334454 45899999999999999999999999999999988 233221
Q ss_pred ---ceEEEEeccCccC---CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhc
Q 006442 161 ---MKIAFLSQEFEVS---MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (645)
Q Consensus 161 ---~~i~~v~Q~~~~~---~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (645)
..+....|..... ...++.+++.. ..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~------------------------------------------------~~ 114 (538)
T 3ozx_A 83 SNELKIVHKIQYVEYASKFLKGTVNEILTK------------------------------------------------ID 114 (538)
T ss_dssp TTCCCEEEECSCTTGGGTTCCSBHHHHHHH------------------------------------------------HC
T ss_pred hcccchhhccchhhhhhhhccCcHHHHhhc------------------------------------------------ch
Confidence 1234444432211 12344443210 00
Q ss_pred HHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 006442 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (645)
Q Consensus 235 ~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIiv 312 (645)
..+++.++++.+|+. ...++++.+|||||||||+|||||+.+|+|||||||||+||+.++.++.++|++ .|+|||+|
T Consensus 115 ~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~v 193 (538)
T 3ozx_A 115 ERGKKDEVKELLNMT-NLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVV 193 (538)
T ss_dssp CSSCHHHHHHHTTCG-GGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred hHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 012345667788885 678999999999999999999999999999999999999999999999887643 38999999
Q ss_pred ecCHHHHHhhcCeEEEEcCcee--EEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHH
Q 006442 313 SHDRAFLDQLCTKIVETEMGVS--RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEK 390 (645)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~G~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 390 (645)
|||++++..+||+|+++++|.. ..+...+.. . . .+ ...+......... +
T Consensus 194 sHdl~~~~~~~d~i~vl~~~~~~~g~~~~~~~~---~-~---------------~~---~~~~~g~~~~~~~-~------ 244 (538)
T 3ozx_A 194 DHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAA---R-V---------------GI---NNFLKGYLPAENM-K------ 244 (538)
T ss_dssp CSCHHHHHHHCSEEEEEEEETTTEEEECCCEEH---H-H---------------HH---HHHHHTEETTTTE-E------
T ss_pred EeChHHHHhhCCEEEEecCCcccccccchhhhH---H-H---------------HH---HHHHhhhchhhhh-h------
Confidence 9999999999999999986532 112222210 0 0 00 0000000000000 0
Q ss_pred HHHHHHHhhhhcccccccceEEeccCCCCCCCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHH
Q 006442 391 KLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470 (645)
Q Consensus 391 ~l~rl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l 470 (645)
. .......... ..........++.+++++|+++.|++. .|..+||+|++||++||+||||||||||+++|
T Consensus 245 ----~---r~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l 314 (538)
T 3ozx_A 245 ----I---RPDEIKFMLK--EVSDLDLSKDLKTKMKWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFARIL 314 (538)
T ss_dssp ----C---SSSCCCCSCC------------CCEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHH
T ss_pred ----c---cchhhhcccc--ccccccccccccceEEEcceEEEECCE-EEEeccceECCCCEEEEECCCCCCHHHHHHHH
Confidence 0 0000000000 000000012346789999999999864 57888999999999999999999999999999
Q ss_pred HcCCCCCeeEEEECceecccchhccchhhcCCCCCCHHHHHHhhhcc---ccHHHHHHHHhhcCCChhhhccCcCcCCHh
Q 006442 471 MGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAED---WRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547 (645)
Q Consensus 471 ~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~---~~~~~~~~~L~~~~l~~~~~~~~~~~LSgG 547 (645)
+|+++|++|+|.+++.. .+|++|.. ...+..|+.+|+...... .....+.++++.+++. +..++++.+||||
T Consensus 315 ~Gl~~p~~G~i~~~~~~--i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGG 389 (538)
T 3ozx_A 315 VGEITADEGSVTPEKQI--LSYKPQRI--FPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLH-RLLESNVNDLSGG 389 (538)
T ss_dssp TTSSCCSBCCEESSCCC--EEEECSSC--CCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGG-GCTTSBGGGCCHH
T ss_pred hCCCCCCCcEEEECCee--eEeechhc--ccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCH-HHhcCChhhCCHH
Confidence 99999999999987754 35666643 234578999998764221 1224567889999994 6789999999999
Q ss_pred HHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeC
Q 006442 548 EKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKG 615 (645)
Q Consensus 548 qkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~ 615 (645)
|||||+|||||+++|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||||++|++
T Consensus 390 q~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~ 461 (538)
T 3ozx_A 390 ELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKG 461 (538)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999998754 56999999999999999999999985
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-69 Score=610.70 Aligned_cols=452 Identities=21% Similarity=0.315 Sum_probs=305.3
Q ss_pred eEEEEeCCe-eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc-eEEEEeccCccCCCCCHH
Q 006442 102 NISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-KIAFLSQEFEVSMSRTVR 179 (645)
Q Consensus 102 nls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~-~i~~v~Q~~~~~~~~Tv~ 179 (645)
|++++|+.. ..|++++ .+++|+++||+||||||||||||+|+|+++|++|+|....... .+++ +....+
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~-------~~g~~~- 152 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKY-------FRGSEL- 152 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHH-------TTTSTH-
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhhe-------ecChhh-
Confidence 457888754 3677766 6899999999999999999999999999999999873110000 0000 000001
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhc--cchhHHHHhH----HHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccc
Q 006442 180 EEFMSAFKEEMEIAGKLERVQKALESA--VDDMDLMGRL----LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (645)
Q Consensus 180 eni~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~ 253 (645)
.++.. . .....+... ....+.+... .......... ......+++.++++.+|+. ...
T Consensus 153 ~~~~~---~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~----~~~~~~~~~~~~l~~~gl~-~~~ 215 (608)
T 3j16_B 153 QNYFT---K---------MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL----RMEKSPEDVKRYIKILQLE-NVL 215 (608)
T ss_dssp HHHHH---H---------HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHH----HCCSCHHHHHHHHHHHTCT-GGG
T ss_pred hhhhh---H---------HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhh----hhhhHHHHHHHHHHHcCCc-chh
Confidence 11000 0 000000000 0000000000 0000000000 0112235678889999996 688
Q ss_pred cccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCeEEEEc
Q 006442 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETE 330 (645)
Q Consensus 254 ~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d~i~~l~ 330 (645)
++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++++ +.|+|||+||||++++..+||+|+++.
T Consensus 216 ~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~ 295 (608)
T 3j16_B 216 KRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIY 295 (608)
T ss_dssp GSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999999888764 458999999999999999999999998
Q ss_pred CceeE--EeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhhccccccc
Q 006442 331 MGVSR--TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRK 408 (645)
Q Consensus 331 ~G~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~rl~~~~~~~~~~~~~ 408 (645)
+|... .+....+. . . . . ...+..... . .. .. ....
T Consensus 296 ~~~~~~~~~~~~~~~---~-~-~--------------~---~~~~~~~~~---~---------------~~-~~--~~~~ 332 (608)
T 3j16_B 296 GVPSVYGVVTLPASV---R-E-G--------------I---NIFLDGHIP---A---------------EN-LR--FRTE 332 (608)
T ss_dssp SCTTTEEEECCCEEH---H-H-H--------------H---HHHHHTEET---T---------------TT-EE--CSSS
T ss_pred CCccccceecCchhH---H-H-H--------------H---HHhhccccc---h---------------hh-hc--cccc
Confidence 76421 11111110 0 0 0 0 000000000 0 00 00 0000
Q ss_pred ceEEeccCCCCCCCcEEEEEeeeeeeCC-eeceeeeeEEEecC-----cEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEE
Q 006442 409 QMKIRFPERGRSGRSVVTIKNLEFGYED-RLLFNRANLTIERG-----EKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482 (645)
Q Consensus 409 ~~~~~~p~~~~~~~~~i~~~~v~~~y~~-~~~l~~vsl~i~~G-----e~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~ 482 (645)
...+.... ......++..++++.|++ ..+++++||++.+| |++||+||||||||||+++|+|+++|++|+..
T Consensus 333 ~~~~~~~~--~~~~~~~~~~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~ 410 (608)
T 3j16_B 333 ALQFRIAD--ATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI 410 (608)
T ss_dssp CCCCCCSS--SSCCCCCCSSSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC
T ss_pred cccccccc--cccceeeeccceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc
Confidence 00000000 001111223677888975 46799999999999 88999999999999999999999999999731
Q ss_pred ECceecccchhccchhhcCCCCCCHHHHHHhhhc--cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHcc
Q 006442 483 LGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560 (645)
Q Consensus 483 ~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~ 560 (645)
. ....+|++|.. ...+..|+.+++..... ......+.++++.+++. +..++++.+|||||||||+|||||+.
T Consensus 411 -~--~~~i~~~~q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGqkQRv~iAraL~~ 484 (608)
T 3j16_B 411 -P--KLNVSMKPQKI--APKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID-DIIDQEVQHLSGGELQRVAIVLALGI 484 (608)
T ss_dssp -C--SCCEEEECSSC--CCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST-TTSSSBSSSCCHHHHHHHHHHHHTTS
T ss_pred -c--CCcEEEecccc--cccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 1 12345666653 23456799998764322 12344567889999995 67899999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeC--CeEEeeCCChhHHHHH
Q 006442 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKG--SNLQDYAGDYNQVQSL 631 (645)
Q Consensus 561 ~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~--g~i~~~~~~~~~~~~~ 631 (645)
+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||||++|++ |++.. .|..++.+..
T Consensus 485 ~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~-~g~p~~~~~~ 560 (608)
T 3j16_B 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAH-ARAPESLLTG 560 (608)
T ss_dssp CCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEE-CCCCEEHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEe-cCChHHHhhh
Confidence 99999999999999999999999988764 57999999999999999999999986 78774 5666666543
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-67 Score=603.75 Aligned_cols=429 Identities=20% Similarity=0.294 Sum_probs=281.6
Q ss_pred CeeeeeeeeEEEECCcEEEEECCCCccHHHHH---------------------HHHHcCCCCCccEE-------EEcCCC
Q 006442 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQL---------------------RIIAGQEEPDSGNV-------IKAKSN 160 (645)
Q Consensus 109 ~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl---------------------~~l~G~~~p~~G~I-------~~~~~~ 160 (645)
...+|+||||+|++||+++|+||||||||||+ +++.|+..|+.|.| .+++..
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45689999999999999999999999999998 89999999985544 443321
Q ss_pred ------ceEEEEeccCcc-------------------CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHh
Q 006442 161 ------MKIAFLSQEFEV-------------------SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215 (645)
Q Consensus 161 ------~~i~~v~Q~~~~-------------------~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (645)
..++|++|.+.. +..+||.||+....... ... .....
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~--~~~-------------~~~~~--- 171 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLE--LTE-------------KEAQI--- 171 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC-------------------------------------
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccc--cch-------------hhhHH---
Confidence 234555554322 13456666653210000 000 00000
Q ss_pred HHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHH
Q 006442 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLD 293 (645)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~--iLLLDEPts~LD~~ 293 (645)
......++.++ .++++.+|+.....++++.+|||||||||+|||||+.+|+ +|||||||+|||+.
T Consensus 172 ------------~~~~~~~~~~~-~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~ 238 (670)
T 3ux8_A 172 ------------ARLILREIRDR-LGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQR 238 (670)
T ss_dssp -------------------CHHH-HHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGG
T ss_pred ------------HHHHHHHHHHH-HHHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHH
Confidence 00000011112 2457888987555789999999999999999999999998 99999999999999
Q ss_pred HHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCeEEEE------cCceeEEeccChHHHHHHHHHHHHHHHHHHHHHHH
Q 006442 294 TIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQR 364 (645)
Q Consensus 294 ~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d~i~~l------~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (645)
++.++.++|+ +.|.|||+||||++++. .||+|++| ++|++ .+.|+..+........ .
T Consensus 239 ~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~ii~l~~g~~~~~G~i-~~~g~~~~~~~~~~~~----~-------- 304 (670)
T 3ux8_A 239 DNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEV-VAAGTPEEVMNDPNSL----T-------- 304 (670)
T ss_dssp GHHHHHHHHHHHHHTTCEEEEECCCHHHHH-HCSEEEEECSSSGGGCCSE-EEEECHHHHHTCTTCH----H--------
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-hCCEEEEecccccccCCEE-EEecCHHHHhcCchhH----H--------
Confidence 9999988774 46899999999999876 59999999 77776 4567654432110000 0
Q ss_pred HHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhhcccccccceEEeccC-CCCCCCcEEEEEeeeeeeCCeeceeee
Q 006442 365 EIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPE-RGRSGRSVVTIKNLEFGYEDRLLFNRA 443 (645)
Q Consensus 365 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~rl~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~i~~~~v~~~y~~~~~l~~v 443 (645)
.. .+.. ....+ .+. ........+++.+.. ..+|+|+
T Consensus 305 -----~~---~~~~---------------------~~~~~---------~~~~~~~~~~~~~~~~~~~-----~~~L~~v 341 (670)
T 3ux8_A 305 -----GQ---YLSG---------------------KKFIP---------IPAERRRPDGRWLEVVGAR-----EHNLKNV 341 (670)
T ss_dssp -----HH---HHTT---------------------SSCCC---------CCSSCCCCCSCEEEEEEEC-----STTCCSE
T ss_pred -----HH---Hhcc---------------------ccccc---------cccccccccccceeecCcc-----ccccccc
Confidence 00 0000 00000 011 011223345555533 4589999
Q ss_pred eEEEecCcEEEEEcCCCCcHHHHHHHHH----------------------cCCCCCeeEEEECceeccc----------c
Q 006442 444 NLTIERGEKTAIIGPNGCGKSTLLKLIM----------------------GLEKPRGGEVLLGEHNVLP----------N 491 (645)
Q Consensus 444 sl~i~~Ge~v~i~G~NGsGKSTLl~~l~----------------------g~~~p~~G~i~~~g~~~~~----------~ 491 (645)
||+|++||++||+||||||||||+++|+ |+..+ .|.+.+++.++.. +
T Consensus 342 sl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~~~~~~~~ 420 (670)
T 3ux8_A 342 SVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRSNPATYTG 420 (670)
T ss_dssp EEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTCCHHHHHT
T ss_pred eeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCcchhhhhh
Confidence 9999999999999999999999998764 33322 3567777654310 0
Q ss_pred hhcc-----------------------ch------------------------------------------------hhc
Q 006442 492 YFEQ-----------------------NQ------------------------------------------------AEA 500 (645)
Q Consensus 492 ~~~q-----------------------~~------------------------------------------------~~~ 500 (645)
++.+ +. ...
T Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (670)
T 3ux8_A 421 VFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIA 500 (670)
T ss_dssp HHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCBTTBCHH
T ss_pred hhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheeecCCCHH
Confidence 0000 00 000
Q ss_pred CCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCC---CeEEeeCCCCCCCHH
Q 006442 501 LDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS---TLLVLDEPTNHLDIP 577 (645)
Q Consensus 501 l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p---~lLlLDEPt~~LD~~ 577 (645)
....+|+.+|+.+........+..+.|..+++.....++++.+|||||||||+|||||+++| +||||||||+|||+.
T Consensus 501 ~~~~ltv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~ 580 (670)
T 3ux8_A 501 EVLDMTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVD 580 (670)
T ss_dssp HHHTSBHHHHHHHTTTCHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHH
T ss_pred HHhhCCHHHHHHHHHHhhhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHH
Confidence 00146788887765433233456778888998644568999999999999999999999887 499999999999999
Q ss_pred HHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEE------eCCeEEeeCCChhHH
Q 006442 578 SKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEV------KGSNLQDYAGDYNQV 628 (645)
Q Consensus 578 s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l------~~g~i~~~~~~~~~~ 628 (645)
++..+.++|+++ +.|||+||||++++. .||||++| ++|+++. .|+.+++
T Consensus 581 ~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~~-~g~~~~~ 638 (670)
T 3ux8_A 581 DIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYIIDLGPEGGDRGGQIVA-VGTPEEV 638 (670)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEEESSSGGGCCEEEE-EECHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCHHHHH-hCCEEEEecCCcCCCCCEEEE-ecCHHHH
Confidence 999999998764 569999999999885 69999999 8999985 4666654
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-51 Score=472.39 Aligned_cols=337 Identities=22% Similarity=0.264 Sum_probs=248.9
Q ss_pred hcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHH---ccCCC
Q 006442 233 DTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYL---GKQDV 307 (645)
Q Consensus 233 ~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~--iLLLDEPts~LD~~~~~~l~~~L---~~~g~ 307 (645)
+++..+++ .|..+|+.....++++.+|||||||||+||++|+.+|+ +|||||||++||+..+++|.++| ++.|.
T Consensus 354 ~ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~ 432 (842)
T 2vf7_A 354 ADLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGN 432 (842)
T ss_dssp HHHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCC
Confidence 35666776 57899997444799999999999999999999999994 99999999999999999998865 56799
Q ss_pred eEEEEecCHHHHHhhcCeEEEE------cCceeEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Q 006442 308 PMVIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGAN 381 (645)
Q Consensus 308 tvIivsHd~~~l~~~~d~i~~l------~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (645)
|||+|+||++++. .||+|++| ++|++ .+.|+++++........ ... +..
T Consensus 433 TVIvVeHdl~~l~-~aD~ii~lgpgaG~~~G~i-v~~g~~~~~~~~~~~~~-----------------~~~---l~~--- 487 (842)
T 2vf7_A 433 SLFVVEHDLDVIR-RADWLVDVGPEAGEKGGEI-LYSGPPEGLKHVPESQT-----------------GQY---LFA--- 487 (842)
T ss_dssp EEEEECCCHHHHT-TCSEEEEECSSSGGGCCSE-EEEECGGGGGGCTTCHH-----------------HHH---HHT---
T ss_pred EEEEEcCCHHHHH-hCCEEEEeCCCcccCCCEE-EEecCHHHHHhchHHHH-----------------HHH---hhh---
Confidence 9999999999875 69999999 56665 67888876543210000 000 000
Q ss_pred hhhHHHHHHHHHHHHHhhhhcccccccceEEeccCCCCCCCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCC
Q 006442 382 SGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGC 461 (645)
Q Consensus 382 ~~~~~~~~~~l~rl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGs 461 (645)
. ...+ +.....+...|+++|+++ ..|+|+||+|++||++||+|+|||
T Consensus 488 ----------------~--~~~~----------~~~~~~~~~~L~v~~l~~-----~~L~~vsl~i~~Geiv~I~G~nGS 534 (842)
T 2vf7_A 488 ----------------D--RHTE----------PHTPREPAGWLELNGVTR-----NNLDNLDVRFPLGVMTSVTGVSGS 534 (842)
T ss_dssp ----------------C--CCCC----------CCCCCCCSCEEEEEEEEE-----TTEEEEEEEEESSSEEEEECCTTS
T ss_pred ----------------c--cccc----------ccccCCCCceEEEEeeee-----cccccceEEEcCCCEEEEEcCCCc
Confidence 0 0000 001113456799999985 269999999999999999999999
Q ss_pred cHHHHHHH-HHcCC-------CC------------------Cee-------EEEECceeccc------------------
Q 006442 462 GKSTLLKL-IMGLE-------KP------------------RGG-------EVLLGEHNVLP------------------ 490 (645)
Q Consensus 462 GKSTLl~~-l~g~~-------~p------------------~~G-------~i~~~g~~~~~------------------ 490 (645)
|||||+++ |+|++ +| .+| .|.+++.++..
T Consensus 535 GKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~ 614 (842)
T 2vf7_A 535 GKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRK 614 (842)
T ss_dssp SHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHH
Confidence 99999997 76543 23 466 67888765410
Q ss_pred ---------------chhccchh----------------hcCC------------------------CCCCHHHHH----
Q 006442 491 ---------------NYFEQNQA----------------EALD------------------------LDKTVLETV---- 511 (645)
Q Consensus 491 ---------------~~~~q~~~----------------~~l~------------------------~~~tv~e~v---- 511 (645)
++|.+|.. ..+. ...++.+++
T Consensus 615 ~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv 694 (842)
T 2vf7_A 615 LFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTV 694 (842)
T ss_dssp HHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBH
T ss_pred HHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccH
Confidence 01111100 0000 123444443
Q ss_pred ----HhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccC---CCeEEeeCCCCCCCHHHHHHHHH
Q 006442 512 ----AEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKP---STLLVLDEPTNHLDIPSKEMLEE 584 (645)
Q Consensus 512 ----~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~---p~lLlLDEPt~~LD~~s~~~l~~ 584 (645)
.+........++.++|+.+++.....++++.+|||||||||+||++|+++ |+||||||||+|||+.++..|.+
T Consensus 695 ~e~l~~~~~~~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~ 774 (842)
T 2vf7_A 695 DEAHDFFADESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQR 774 (842)
T ss_dssp HHHHHHTTTSHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHH
T ss_pred HHHHHHhhcchHHHHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHH
Confidence 22211112345778999999964356899999999999999999999996 79999999999999999999999
Q ss_pred HHHhc---CceEEEEecCHHHHHhhCCEEEEE------eCCeEEeeCCChhHHHH
Q 006442 585 AISEY---KGTVITVSHDRYFVKQIVNRVVEV------KGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 585 ~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l------~~g~i~~~~~~~~~~~~ 630 (645)
+|+++ +.|||+||||++++ .+||||++| ++|+++. .|+++++.+
T Consensus 775 lL~~L~~~G~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~-~g~~~el~~ 827 (842)
T 2vf7_A 775 QLVKLVDAGNTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVA-QGTPAEVAQ 827 (842)
T ss_dssp HHHHHHHTTCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEE-EECHHHHTT
T ss_pred HHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEE-EcCHHHHHh
Confidence 88754 67999999999999 689999999 6899985 577777653
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-49 Score=465.68 Aligned_cols=334 Identities=21% Similarity=0.317 Sum_probs=241.7
Q ss_pred HHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEe
Q 006442 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIIS 313 (645)
Q Consensus 239 i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~--iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivs 313 (645)
..+.|..+|+.....++++.+|||||||||+|||||+++|+ +|||||||+|||+...++|.++|+ +.|.|||+||
T Consensus 444 ~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVt 523 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVE 523 (916)
T ss_dssp HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEEC
T ss_pred HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34567889996445789999999999999999999999887 999999999999999999988874 4689999999
Q ss_pred cCHHHHHhhcCeEEEE------cCceeEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHH
Q 006442 314 HDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASS 387 (645)
Q Consensus 314 Hd~~~l~~~~d~i~~l------~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 387 (645)
||++++.. ||+|++| ++|++ .+.|++.++........ ....+ ..
T Consensus 524 Hd~~~~~~-aD~ii~lgpgag~~~G~i-v~~G~~~e~~~~~~~~~----------------~~~~l---~~--------- 573 (916)
T 3pih_A 524 HDEEVIRN-ADHIIDIGPGGGTNGGRV-VFQGTVDELLKNPDSSL----------------TGEYL---SG--------- 573 (916)
T ss_dssp CCHHHHHT-CSEEEEEESSSGGGCSEE-EEEECHHHHHHSCTTCH----------------HHHHH---HS---------
T ss_pred CCHHHHHh-CCEEEEEcCCcccCCCEE-EEeechhhhhcCchhcc----------------hhhhh---hc---------
Confidence 99999875 9999999 77776 67888766532110000 00000 00
Q ss_pred HHHHHHHHHHhhhhcccccccceEEeccCCCCCCCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHH
Q 006442 388 AEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLL 467 (645)
Q Consensus 388 ~~~~l~rl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl 467 (645)
... ...+.........+++++++ ...|+++||+|+.|++++|+|+||||||||+
T Consensus 574 --------------~~~-------~~~~~~~~~~~~~l~v~~~~-----~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 574 --------------KRK-------ITVNKTRRLPYASLKIKGVR-----HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp --------------SSC-------CCCCSSCCCCSSEEEEEEEC-----STTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred --------------ccc-------cccccccccccceEEEeeec-----cccccccceEEcCCcEEEEEccCCCChhhhH
Confidence 000 00011111223457777765 3469999999999999999999999999997
Q ss_pred ---------HHHHcCCCCC------ee------EEEECceeccc------c-h--------------------------h
Q 006442 468 ---------KLIMGLEKPR------GG------EVLLGEHNVLP------N-Y--------------------------F 493 (645)
Q Consensus 468 ---------~~l~g~~~p~------~G------~i~~~g~~~~~------~-~--------------------------~ 493 (645)
+++.+...+. +| .+.++..++.. . | |
T Consensus 628 ~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~f 707 (916)
T 3pih_A 628 METLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRF 707 (916)
T ss_dssp HHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGG
T ss_pred HHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccccchhhhHHHHHHHhccchHHHhcccccccc
Confidence 3444443332 22 23443322100 0 0 0
Q ss_pred ccch----------------hhcC--------------------------------CCCCCHHHHHHhhhccccHHHHHH
Q 006442 494 EQNQ----------------AEAL--------------------------------DLDKTVLETVAEAAEDWRIDDIKG 525 (645)
Q Consensus 494 ~q~~----------------~~~l--------------------------------~~~~tv~e~v~~~~~~~~~~~~~~ 525 (645)
..+. +..+ ...+|+.+++.+........+..+
T Consensus 708 s~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~~~~~~~~~~ 787 (916)
T 3pih_A 708 SFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKGKNISDILDMTVDEALEFFKNIPSIKRTLQ 787 (916)
T ss_dssp CTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTTCHHHHHHHH
T ss_pred cccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhcchhHHHHHH
Confidence 0000 0000 013566676665443333456778
Q ss_pred HHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCC---CeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecC
Q 006442 526 LLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS---TLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHD 599 (645)
Q Consensus 526 ~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p---~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd 599 (645)
.|..+|+.....++++.+|||||||||+|||||+++| +||||||||+|||+.+++.|.++|+++ +.|||+||||
T Consensus 788 ~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~Hd 867 (916)
T 3pih_A 788 VLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHN 867 (916)
T ss_dssp HHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 8999999654568899999999999999999999875 799999999999999999999998754 5699999999
Q ss_pred HHHHHhhCCEEEEE------eCCeEEeeCCChhHHHH
Q 006442 600 RYFVKQIVNRVVEV------KGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 600 ~~~i~~~~d~v~~l------~~g~i~~~~~~~~~~~~ 630 (645)
++++.. ||+|++| ++|+|+. .|+.+++++
T Consensus 868 L~~i~~-ADrIivLgp~gg~~~G~Iv~-~Gtpeel~~ 902 (916)
T 3pih_A 868 LDVIKN-ADHIIDLGPEGGKEGGYIVA-TGTPEEIAK 902 (916)
T ss_dssp HHHHTT-CSEEEEEESSSGGGCCEEEE-EESHHHHHS
T ss_pred HHHHHh-CCEEEEecCCCCCCCCEEEE-EcCHHHHHh
Confidence 999875 9999999 8999985 578877654
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-49 Score=461.41 Aligned_cols=336 Identities=21% Similarity=0.287 Sum_probs=243.4
Q ss_pred cHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHH---ccCCCe
Q 006442 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYL---GKQDVP 308 (645)
Q Consensus 234 ~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p--~iLLLDEPts~LD~~~~~~l~~~L---~~~g~t 308 (645)
++.+++ +.|..+|+..-.+++++.+|||||||||+||++|..+| ++|||||||+|||+...++|.+.| ++.|.|
T Consensus 480 ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~T 558 (972)
T 2r6f_A 480 EIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNT 558 (972)
T ss_dssp HHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCE
T ss_pred HHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCE
Confidence 345555 45899999644579999999999999999999999985 999999999999999999998875 457999
Q ss_pred EEEEecCHHHHHhhcCeEEEE------cCceeEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCch
Q 006442 309 MVIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANS 382 (645)
Q Consensus 309 vIivsHd~~~l~~~~d~i~~l------~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (645)
||+|+||++++. .||+|++| ++|++ .+.|+++++...... ..
T Consensus 559 VIvVeHdl~~i~-~ADrIi~LgpgaG~~gG~i-v~~G~~~e~~~~~~s------------------------------lt 606 (972)
T 2r6f_A 559 LIVVEHDEDTML-AADYLIDIGPGAGIHGGEV-VAAGTPEEVMNDPNS------------------------------LT 606 (972)
T ss_dssp EEEECCCHHHHH-SCSEEEEECSSSGGGCCSE-EEEECTTTTTTCTTC------------------------------TT
T ss_pred EEEEecCHHHHH-hCCEEEEeCCCccCCCCEE-EEecCHHHHHhhhHH------------------------------HH
Confidence 999999999986 69999999 56766 677887654321000 00
Q ss_pred hhHHHHHHHHHHHHHhhhhcccccccceEEeccCC-CCCCCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCC
Q 006442 383 GRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPER-GRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGC 461 (645)
Q Consensus 383 ~~~~~~~~~l~rl~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGs 461 (645)
+. .+ ....... .|.. .....+.|++++++. ..|+|+||+|+.||++||+|+|||
T Consensus 607 ~~------~l---~g~~~~~-----------~~~~~~~~~~~~L~v~~l~~-----~~Lk~Vsl~I~~Geiv~I~G~nGS 661 (972)
T 2r6f_A 607 GQ------YL---SGKKFIP-----------IPAERRRPDGRWLEVVGARE-----HNLKNVSVKIPLGTFVAVTGVSGS 661 (972)
T ss_dssp HH------HH---HTSSCCC-----------CCSSCCCCCSCEEEEEEECS-----SSCCSEEEEEESSSEEECCBCTTS
T ss_pred HH------Hh---cCCcccc-----------CccccccccceEEEEecCcc-----cccccceEEEcCCCEEEEEcCCCC
Confidence 00 00 0000000 0111 112346799999873 369999999999999999999999
Q ss_pred cHHHHHHHHH-cCC-------CCCee-------------EEEECceecc--c---------------------------c
Q 006442 462 GKSTLLKLIM-GLE-------KPRGG-------------EVLLGEHNVL--P---------------------------N 491 (645)
Q Consensus 462 GKSTLl~~l~-g~~-------~p~~G-------------~i~~~g~~~~--~---------------------------~ 491 (645)
|||||+++|+ |.+ .+..| .|.+++.++. + +
T Consensus 662 GKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~G 741 (972)
T 2r6f_A 662 GKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRG 741 (972)
T ss_dssp SHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhc
Confidence 9999999854 221 11222 3677765541 0 0
Q ss_pred hhcc----chh----------------hcCC--------------------------------CCCCHHHHHHhhhcccc
Q 006442 492 YFEQ----NQA----------------EALD--------------------------------LDKTVLETVAEAAEDWR 519 (645)
Q Consensus 492 ~~~q----~~~----------------~~l~--------------------------------~~~tv~e~v~~~~~~~~ 519 (645)
|..+ |.. ..+. ..+|+.+++.+......
T Consensus 742 y~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~~ 821 (972)
T 2r6f_A 742 YKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIPK 821 (972)
T ss_dssp CCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCHH
T ss_pred ccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcchh
Confidence 1111 000 0000 02455666544322112
Q ss_pred HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCC---CeEEeeCCCCCCCHHHHHHHHHHHHhc---CceE
Q 006442 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS---TLLVLDEPTNHLDIPSKEMLEEAISEY---KGTV 593 (645)
Q Consensus 520 ~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p---~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tv 593 (645)
..+..++|+.+|+.....++++.+|||||||||+||++|+.+| +||||||||+|||+.++..|.++|+++ +.||
T Consensus 822 ~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TV 901 (972)
T 2r6f_A 822 IKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTV 901 (972)
T ss_dssp HHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 2345688999999643678999999999999999999999865 999999999999999999999998754 5699
Q ss_pred EEEecCHHHHHhhCCEEEEE------eCCeEEeeCCChhHHH
Q 006442 594 ITVSHDRYFVKQIVNRVVEV------KGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 594 i~vsHd~~~i~~~~d~v~~l------~~g~i~~~~~~~~~~~ 629 (645)
|+||||++++. +||||++| ++|+++. .|..+++.
T Consensus 902 IvisHdl~~i~-~aDrIivL~p~gG~~~G~Iv~-~g~~~el~ 941 (972)
T 2r6f_A 902 LVIEHNLDVIK-TADYIIDLGPEGGDRGGQIVA-VGTPEEVA 941 (972)
T ss_dssp EEECCCHHHHT-TCSEEEEECSSSTTSCCSEEE-EESHHHHH
T ss_pred EEEcCCHHHHH-hCCEEEEEcCCCCCCCCEEEE-ecCHHHHH
Confidence 99999999984 79999999 6899975 46666554
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-47 Score=404.00 Aligned_cols=208 Identities=26% Similarity=0.378 Sum_probs=181.0
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC------------ceEE
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------MKIA 164 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~------------~~i~ 164 (645)
+|+++|++|+|++.++|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.. ..||
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig 83 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLG 83 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCE
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEE
Confidence 5999999999999999999999999999999999999999999999999999999999998742 2599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
||+|++.+++.+||+||+..+... ......+.++++.++++
T Consensus 84 ~vfQ~~~l~p~ltV~eni~~~l~~---------------------------------------~~~~~~~~~~~v~~~l~ 124 (359)
T 3fvq_A 84 YLVQEGVLFPHLTVYRNIAYGLGN---------------------------------------GKGRTAQERQRIEAMLE 124 (359)
T ss_dssp EECTTCCCCTTSCHHHHHHTTSTT---------------------------------------SSCCSHHHHHHHHHHHH
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHH---------------------------------------cCCChHHHHHHHHHHHH
Confidence 999999999999999999643210 00122234567788899
Q ss_pred hcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHH
Q 006442 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLD 320 (645)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L----~~~g~tvIivsHd~~~l~ 320 (645)
.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.| ++.|+|||+||||++++.
T Consensus 125 ~~gL~-~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~ 203 (359)
T 3fvq_A 125 LTGIS-ELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEAL 203 (359)
T ss_dssp HHTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH
T ss_pred HcCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 99996 6889999999999999999999999999999999999999999988887643 457999999999999999
Q ss_pred hhcCeEEEEcCceeEEeccChHHHH
Q 006442 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 321 ~~~d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
.+||||++|++|++ ...|+..+.+
T Consensus 204 ~~aDri~vl~~G~i-~~~g~~~el~ 227 (359)
T 3fvq_A 204 QYADRIAVMKQGRI-LQTASPHELY 227 (359)
T ss_dssp HHCSEEEEEETTEE-EEEECHHHHH
T ss_pred HHCCEEEEEECCEE-EEEeCHHHHH
Confidence 99999999999998 4567765543
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-47 Score=401.32 Aligned_cols=210 Identities=25% Similarity=0.423 Sum_probs=180.9
Q ss_pred CCccEEEEeEEEEeCC----eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC---------
Q 006442 94 ISSGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------- 160 (645)
Q Consensus 94 ~~~~i~i~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------- 160 (645)
.+++|+++|++|+|++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 4457999999999963 469999999999999999999999999999999999999999999998753
Q ss_pred ----ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHH
Q 006442 161 ----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (645)
Q Consensus 161 ----~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (645)
.+|||++|++.+++..||+||+...... ...+..+..
T Consensus 101 ~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~---------------------------------------~~~~~~~~~ 141 (366)
T 3tui_C 101 TKARRQIGMIFQHFNLLSSRTVFGNVALPLEL---------------------------------------DNTPKDEVK 141 (366)
T ss_dssp HHHHTTEEEECSSCCCCTTSCHHHHHHHHHHH---------------------------------------SCCCHHHHH
T ss_pred HHHhCcEEEEeCCCccCCCCCHHHHHHHHHHh---------------------------------------cCCCHHHHH
Confidence 2599999999998899999998632110 011223445
Q ss_pred HHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEE
Q 006442 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVII 312 (645)
Q Consensus 237 ~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIiv 312 (645)
+++.++|+.+|+. +..++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+ +.|.|||+|
T Consensus 142 ~~v~~lL~~vgL~-~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~v 220 (366)
T 3tui_C 142 RRVTELLSLVGLG-DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLI 220 (366)
T ss_dssp HHHHHHHHHHTCG-GGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEE
T ss_pred HHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 6788899999996 67899999999999999999999999999999999999999999999988774 359999999
Q ss_pred ecCHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
|||++++..+||+|++|++|++ ...|+..+.
T Consensus 221 THdl~~~~~~aDrv~vl~~G~i-v~~g~~~ev 251 (366)
T 3tui_C 221 THEMDVVKRICDCVAVISNGEL-IEQDTVSEV 251 (366)
T ss_dssp ESCHHHHHHHCSEEEEEETTEE-EECCBHHHH
T ss_pred ecCHHHHHHhCCEEEEEECCEE-EEEcCHHHH
Confidence 9999999999999999999998 456765543
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-46 Score=377.89 Aligned_cols=199 Identities=27% Similarity=0.400 Sum_probs=172.0
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------------c
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------M 161 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------------~ 161 (645)
++|+++|++|+|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 3 ~~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 82 (224)
T 2pcj_A 3 EILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82 (224)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred cEEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhC
Confidence 36999999999998889999999999999999999999999999999999999999999998742 2
Q ss_pred eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHh
Q 006442 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (645)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (645)
.|+|++|++.+++..||+||+...... . ..+.....+++.+
T Consensus 83 ~i~~v~q~~~l~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~~~~~~ 123 (224)
T 2pcj_A 83 KLGFVFQFHYLIPELTALENVIVPMLK---------------M------------------------GKPKKEAKERGEY 123 (224)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHH---------------T------------------------TCCHHHHHHHHHH
T ss_pred cEEEEecCcccCCCCCHHHHHHhHHHH---------------c------------------------CCCHHHHHHHHHH
Confidence 499999999888889999998532100 0 0111122345677
Q ss_pred hchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHH
Q 006442 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAF 318 (645)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~ 318 (645)
+++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|+ +.|+|||+||||+++
T Consensus 124 ~l~~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~ 202 (224)
T 2pcj_A 124 LLSELGLG-DKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL 202 (224)
T ss_dssp HHHHTTCT-TCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred HHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 88899996 57889999999999999999999999999999999999999999999988774 348999999999999
Q ss_pred HHhhcCeEEEEcCceeE
Q 006442 319 LDQLCTKIVETEMGVSR 335 (645)
Q Consensus 319 l~~~~d~i~~l~~G~~~ 335 (645)
+ .+||+++++++|++.
T Consensus 203 ~-~~~d~v~~l~~G~i~ 218 (224)
T 2pcj_A 203 A-ELTHRTLEMKDGKVV 218 (224)
T ss_dssp H-TTSSEEEEEETTEEE
T ss_pred H-HhCCEEEEEECCEEE
Confidence 8 799999999999873
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-46 Score=383.70 Aligned_cols=210 Identities=24% Similarity=0.407 Sum_probs=178.5
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc------------e
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------K 162 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~------------~ 162 (645)
.++|+++|++|+|+++++|+||||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 22 ~~~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 22 LQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp CCSEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred hheEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 3469999999999988999999999999999999999999999999999999999999999987432 4
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhh
Q 006442 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (645)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (645)
|+|++|++.+++..||+||+...... .. .......++++.++
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~--------------~~------------------------~~~~~~~~~~~~~~ 143 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMK--------------VR------------------------KWPREKAEAKAMEL 143 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHH--------------TS------------------------CCCHHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHH--------------Hc------------------------CCCHHHHHHHHHHH
Confidence 99999999888888999998532100 00 00111223456778
Q ss_pred chhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHH
Q 006442 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (645)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l 319 (645)
++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|+ +.|+|||+||||++++
T Consensus 144 l~~~~L~-~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~ 222 (263)
T 2olj_A 144 LDKVGLK-DKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFA 222 (263)
T ss_dssp HHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred HHHCCCc-hHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH
Confidence 8899985 67889999999999999999999999999999999999999999999988774 3489999999999999
Q ss_pred HhhcCeEEEEcCceeEEeccChHHH
Q 006442 320 DQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 320 ~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
..+||+|+++++|++. +.|+..+.
T Consensus 223 ~~~~d~v~~l~~G~i~-~~g~~~~~ 246 (263)
T 2olj_A 223 REVGDRVLFMDGGYII-EEGKPEDL 246 (263)
T ss_dssp HHHCSEEEEEETTEEE-EEECHHHH
T ss_pred HHhCCEEEEEECCEEE-EECCHHHH
Confidence 9999999999999984 45665543
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=401.66 Aligned_cols=208 Identities=26% Similarity=0.413 Sum_probs=181.9
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------ceEEEEec
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------~~i~~v~Q 168 (645)
.|+++|++|+|++..+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.. ..||||+|
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ 82 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 82 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECT
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEec
Confidence 4999999999999999999999999999999999999999999999999999999999998743 35999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCC
Q 006442 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (645)
Q Consensus 169 ~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (645)
++.+++.+||+||+...... ...+..+.++++.++++.+|+
T Consensus 83 ~~~l~p~ltV~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~~l~~~~L 123 (381)
T 3rlf_A 83 SYALYPHLSVAENMSFGLKL---------------------------------------AGAKKEVINQRVNQVAEVLQL 123 (381)
T ss_dssp TCCCCTTSCHHHHHTHHHHH---------------------------------------TTCCHHHHHHHHHHHHHHTTC
T ss_pred CCcCCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHHcCC
Confidence 99999999999998632110 012233455678889999999
Q ss_pred CcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcC
Q 006442 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCT 324 (645)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d 324 (645)
. +..++++.+|||||||||+|||||+.+|+||||||||++||+..+..+.+.|+ +.|.|+|+||||++++..+||
T Consensus 124 ~-~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aD 202 (381)
T 3rlf_A 124 A-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLAD 202 (381)
T ss_dssp G-GGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCS
T ss_pred c-hhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCC
Confidence 6 68899999999999999999999999999999999999999999998887764 349999999999999999999
Q ss_pred eEEEEcCceeEEeccChHHHH
Q 006442 325 KIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 325 ~i~~l~~G~~~~~~g~~~~~~ 345 (645)
+|++|++|++. ..|+..+.+
T Consensus 203 ri~vl~~G~i~-~~g~~~~l~ 222 (381)
T 3rlf_A 203 KIVVLDAGRVA-QVGKPLELY 222 (381)
T ss_dssp EEEEEETTEEE-EEECHHHHH
T ss_pred EEEEEECCEEE-EEeCHHHHH
Confidence 99999999984 556655443
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-47 Score=388.73 Aligned_cols=209 Identities=22% Similarity=0.384 Sum_probs=178.4
Q ss_pred ccEEEEeEEEEeCC-eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc------------e
Q 006442 96 SGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------K 162 (645)
Q Consensus 96 ~~i~i~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~------------~ 162 (645)
++|+++|++|+|++ .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred cEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 46999999999975 4599999999999999999999999999999999999999999999987532 5
Q ss_pred EEEEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHh
Q 006442 163 IAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (645)
Q Consensus 163 i~~v~Q~~~-~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (645)
|||++|+|. .++..||+||+...... ...+..+..+++.+
T Consensus 86 ig~v~Q~~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~~~~~~ 126 (275)
T 3gfo_A 86 IGIVFQDPDNQLFSASVYQDVSFGAVN---------------------------------------MKLPEDEIRKRVDN 126 (275)
T ss_dssp EEEECSSGGGTCCSSBHHHHHHHHHHT---------------------------------------SCCCHHHHHHHHHH
T ss_pred EEEEEcCcccccccCcHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHH
Confidence 999999984 34578999998632100 01122234566788
Q ss_pred hchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHH
Q 006442 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (645)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~ 317 (645)
+++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+ +.|+|||+||||++
T Consensus 127 ~l~~~~L~-~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~ 205 (275)
T 3gfo_A 127 ALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID 205 (275)
T ss_dssp HHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS
T ss_pred HHHHcCCc-hhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH
Confidence 89999995 67899999999999999999999999999999999999999999999988764 34899999999999
Q ss_pred HHHhhcCeEEEEcCceeEEeccChHHHH
Q 006442 318 FLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 318 ~l~~~~d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
++..+||+|++|++|++ .+.|+..+..
T Consensus 206 ~~~~~~drv~~l~~G~i-~~~g~~~~~~ 232 (275)
T 3gfo_A 206 IVPLYCDNVFVMKEGRV-ILQGNPKEVF 232 (275)
T ss_dssp SGGGGCSEEEEEETTEE-EEEECHHHHT
T ss_pred HHHHhCCEEEEEECCEE-EEECCHHHHh
Confidence 99999999999999998 4667766543
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-46 Score=383.21 Aligned_cols=208 Identities=26% Similarity=0.452 Sum_probs=177.6
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc---------------
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------------- 161 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~--------------- 161 (645)
+|+++|++++|++.++|+||||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 85 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 85 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCH
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccCh
Confidence 59999999999988999999999999999999999999999999999999999999999987421
Q ss_pred --------eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChh
Q 006442 162 --------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD 233 (645)
Q Consensus 162 --------~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (645)
.|||++|++.+++.+||+||+...... .. ..+..
T Consensus 86 ~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~--------------~~------------------------~~~~~ 127 (262)
T 1b0u_A 86 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ--------------VL------------------------GLSKH 127 (262)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHH--------------TT------------------------CCCHH
T ss_pred hhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHH--------------hc------------------------CCCHH
Confidence 399999999888889999998532100 00 01111
Q ss_pred cHHHHHHhhchhcCCCccc-ccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeE
Q 006442 234 TLDAKVSKLMPELGFTADD-GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPM 309 (645)
Q Consensus 234 ~~~~~i~~ll~~lgl~~~~-~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tv 309 (645)
..++++.++++.+|+. +. .++++.+|||||||||+|||||+.+|+||||||||+|||+.+++.+.++|+ +.|+||
T Consensus 128 ~~~~~~~~~l~~~~L~-~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tv 206 (262)
T 1b0u_A 128 DARERALKYLAKVGID-ERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTM 206 (262)
T ss_dssp HHHHHHHHHHHHTTCC-HHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHcCCC-chhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEE
Confidence 2245677888999996 56 789999999999999999999999999999999999999999999988774 348999
Q ss_pred EEEecCHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 310 VIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 310 IivsHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
|+||||++++..+||+|+++++|++. ..|+..+.
T Consensus 207 i~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 240 (262)
T 1b0u_A 207 VVVTHEMGFARHVSSHVIFLHQGKIE-EEGDPEQV 240 (262)
T ss_dssp EEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHH
T ss_pred EEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999999999984 45665544
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-46 Score=378.47 Aligned_cols=202 Identities=27% Similarity=0.369 Sum_probs=170.1
Q ss_pred cEEEEeEEEEeCC----eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC------------
Q 006442 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (645)
Q Consensus 97 ~i~i~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~------------ 160 (645)
+|+++|++|+|++ .++|+||||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 3899999999963 469999999999999999999999999999999999999999999998742
Q ss_pred --ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHH
Q 006442 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (645)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (645)
..|||++|++.+++..||+||+...... ... .........++
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~---------------~~~---------------------~~~~~~~~~~~ 124 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLIF---------------KYR---------------------GAMSGEERRKR 124 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHT---------------CSS---------------------SCCCHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHHh---------------hhc---------------------cCCCHHHHHHH
Confidence 1499999999988889999998632100 000 00111223456
Q ss_pred HHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEec
Q 006442 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISH 314 (645)
Q Consensus 239 i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsH 314 (645)
+.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|+|||+|||
T Consensus 125 ~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtH 204 (235)
T 3tif_A 125 ALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204 (235)
T ss_dssp HHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECS
T ss_pred HHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 677888999974445899999999999999999999999999999999999999999999888743 3899999999
Q ss_pred CHHHHHhhcCeEEEEcCceeE
Q 006442 315 DRAFLDQLCTKIVETEMGVSR 335 (645)
Q Consensus 315 d~~~l~~~~d~i~~l~~G~~~ 335 (645)
|++.+ .+||+|++|++|++.
T Consensus 205 d~~~~-~~~d~i~~l~~G~i~ 224 (235)
T 3tif_A 205 DINVA-RFGERIIYLKDGEVE 224 (235)
T ss_dssp CHHHH-TTSSEEEEEETTEEE
T ss_pred CHHHH-HhCCEEEEEECCEEE
Confidence 99965 799999999999974
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-46 Score=379.22 Aligned_cols=209 Identities=26% Similarity=0.382 Sum_probs=177.9
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC---------ceEEE
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAF 165 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~---------~~i~~ 165 (645)
.++|+++|++|+|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|||
T Consensus 13 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~ 92 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 92 (256)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEE
T ss_pred CCeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEE
Confidence 456999999999998899999999999999999999999999999999999999999999998743 25999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchh
Q 006442 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (645)
Q Consensus 166 v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (645)
++|++.+++..||+||+..... +. ........+++.++++.
T Consensus 93 v~q~~~l~~~ltv~enl~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~ 133 (256)
T 1vpl_A 93 LPEEAGAYRNMQGIEYLRFVAG---------------FY------------------------ASSSSEIEEMVERATEI 133 (256)
T ss_dssp ECTTCCCCTTSBHHHHHHHHHH---------------HH------------------------CCCHHHHHHHHHHHHHH
T ss_pred EcCCCCCCCCCcHHHHHHHHHH---------------Hc------------------------CCChHHHHHHHHHHHHH
Confidence 9999988888899999853210 00 01111223456678888
Q ss_pred cCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhh
Q 006442 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQL 322 (645)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~ 322 (645)
+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+ +.|+|||++|||++++..+
T Consensus 134 ~gL~-~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 212 (256)
T 1vpl_A 134 AGLG-EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFL 212 (256)
T ss_dssp HCCG-GGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTT
T ss_pred CCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHH
Confidence 8986 57889999999999999999999999999999999999999999999988774 3589999999999999999
Q ss_pred cCeEEEEcCceeEEeccChHHH
Q 006442 323 CTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 323 ~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
||+++++++|++. +.|+..+.
T Consensus 213 ~d~v~~l~~G~i~-~~g~~~~~ 233 (256)
T 1vpl_A 213 CDRIALIHNGTIV-ETGTVEEL 233 (256)
T ss_dssp CSEEEEEETTEEE-EEEEHHHH
T ss_pred CCEEEEEECCEEE-EecCHHHH
Confidence 9999999999984 45665443
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=379.19 Aligned_cols=205 Identities=23% Similarity=0.309 Sum_probs=178.0
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc----------eEEE
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAF 165 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~----------~i~~ 165 (645)
++|+++|++++|+++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. .++|
T Consensus 10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~ 89 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAV 89 (266)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEE
T ss_pred ceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEE
Confidence 469999999999999999999999999999999999999999999999999999999999987532 4999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchh
Q 006442 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (645)
Q Consensus 166 v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (645)
++|++.+++..||+||+...... .......+++.++++.
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~-----------------------------------------~~~~~~~~~~~~~l~~ 128 (266)
T 4g1u_C 90 MRQYSELAFPFSVSEVIQMGRAP-----------------------------------------YGGSQDRQALQQVMAQ 128 (266)
T ss_dssp ECSCCCCCSCCBHHHHHHGGGTT-----------------------------------------SCSTTHHHHHHHHHHH
T ss_pred EecCCccCCCCCHHHHHHhhhhh-----------------------------------------cCcHHHHHHHHHHHHH
Confidence 99999888889999998632110 0112234566778888
Q ss_pred cCCCcccccccCCCCChHHHHHHHHHHHHcc------CCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 006442 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQ------DPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (645)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~------~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd 315 (645)
+|+. +..++++.+|||||||||+|||||+. +|++|||||||+|||+.++..+.++|++ .++|||+||||
T Consensus 129 ~~l~-~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHd 207 (266)
T 4g1u_C 129 TDCL-ALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHD 207 (266)
T ss_dssp TTCS-TTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSC
T ss_pred cCCh-hHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcC
Confidence 9986 57889999999999999999999999 9999999999999999999999887743 35799999999
Q ss_pred HHHHHhhcCeEEEEcCceeEEeccChHH
Q 006442 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 316 ~~~l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
++++..+||+|++|++|++. +.|+..+
T Consensus 208 l~~~~~~~d~v~vl~~G~i~-~~g~~~~ 234 (266)
T 4g1u_C 208 LNLAALYADRIMLLAQGKLV-ACGTPEE 234 (266)
T ss_dssp HHHHHHHCSEEEEEETTEEE-EEECHHH
T ss_pred HHHHHHhCCEEEEEECCEEE-EEcCHHH
Confidence 99999999999999999984 5566544
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-46 Score=375.29 Aligned_cols=206 Identities=21% Similarity=0.323 Sum_probs=173.5
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc-----------eEE
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KIA 164 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~-----------~i~ 164 (645)
++|+++|++|+|+++++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.+. .|+
T Consensus 5 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 84 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIA 84 (240)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEE
T ss_pred ceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEE
Confidence 369999999999988899999999999999999999999999999999999999999999987421 399
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
|++|++.+++..||+||+...... ........+.+.++++
T Consensus 85 ~v~q~~~l~~~ltv~enl~~~~~~----------------------------------------~~~~~~~~~~~~~~l~ 124 (240)
T 1ji0_A 85 LVPEGRRIFPELTVYENLMMGAYN----------------------------------------RKDKEGIKRDLEWIFS 124 (240)
T ss_dssp EECSSCCCCTTSBHHHHHHGGGTT----------------------------------------CCCSSHHHHHHHHHHH
T ss_pred EEecCCccCCCCcHHHHHHHhhhc----------------------------------------CCCHHHHHHHHHHHHH
Confidence 999999888888999998632100 0001122334455666
Q ss_pred hcC-CCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHH
Q 006442 245 ELG-FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (645)
Q Consensus 245 ~lg-l~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~ 320 (645)
.++ +. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|+ +.|+|||+||||++++.
T Consensus 125 ~~~~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~ 203 (240)
T 1ji0_A 125 LFPRLK-ERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGAL 203 (240)
T ss_dssp HCHHHH-TTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHH
T ss_pred HcccHh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 663 64 46788899999999999999999999999999999999999999999988774 35899999999999999
Q ss_pred hhcCeEEEEcCceeEEeccChHH
Q 006442 321 QLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 321 ~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
.+||+|+++++|++. +.|+..+
T Consensus 204 ~~~d~v~~l~~G~i~-~~g~~~~ 225 (240)
T 1ji0_A 204 KVAHYGYVLETGQIV-LEGKASE 225 (240)
T ss_dssp HHCSEEEEEETTEEE-EEEEHHH
T ss_pred HhCCEEEEEECCEEE-EEcCHHH
Confidence 999999999999984 4565544
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-46 Score=393.52 Aligned_cols=210 Identities=27% Similarity=0.450 Sum_probs=181.1
Q ss_pred CccEEEEeEEEEe-CCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------ceEEE
Q 006442 95 SSGVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAF 165 (645)
Q Consensus 95 ~~~i~i~nls~~y-~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------~~i~~ 165 (645)
..+|+++|++|+| ++.++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.. ..|||
T Consensus 12 ~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 91 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGL 91 (355)
T ss_dssp CEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEE
T ss_pred CceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEE
Confidence 4569999999999 87789999999999999999999999999999999999999999999998743 35999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchh
Q 006442 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (645)
Q Consensus 166 v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (645)
|+|++.+++.+||+||+...... ...+..+.++++.++++.
T Consensus 92 v~Q~~~l~~~ltv~eni~~~l~~---------------------------------------~~~~~~~~~~~v~~~l~~ 132 (355)
T 1z47_A 92 VFQNYALFQHMTVYDNVSFGLRE---------------------------------------KRVPKDEMDARVRELLRF 132 (355)
T ss_dssp ECGGGCCCTTSCHHHHHHHHHHH---------------------------------------TTCCHHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHH
Confidence 99999998999999998632110 001122335667788999
Q ss_pred cCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHh
Q 006442 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~ 321 (645)
+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+..++.+.++|++ .|.|||+||||++++..
T Consensus 133 ~gL~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~ 211 (355)
T 1z47_A 133 MRLE-SYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALE 211 (355)
T ss_dssp TTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHH
T ss_pred cCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHH
Confidence 9996 678999999999999999999999999999999999999999999999887643 48999999999999999
Q ss_pred hcCeEEEEcCceeEEeccChHHHH
Q 006442 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 322 ~~d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
+||+|++|++|++. ..|+..+.+
T Consensus 212 ~adri~vl~~G~i~-~~g~~~~l~ 234 (355)
T 1z47_A 212 VADRVLVLHEGNVE-QFGTPEEVY 234 (355)
T ss_dssp HCSEEEEEETTEEE-EEECHHHHH
T ss_pred hCCEEEEEECCEEE-EEcCHHHHH
Confidence 99999999999984 557655443
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-46 Score=381.92 Aligned_cols=218 Identities=21% Similarity=0.232 Sum_probs=178.1
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----------ceEE
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-----------~~i~ 164 (645)
++|+++|++|+|+++++|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.+ ..|+
T Consensus 6 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 85 (257)
T 1g6h_A 6 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 85 (257)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred cEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 46999999999998899999999999999999999999999999999999999999999998742 1499
Q ss_pred EEeccCccCCCCCHHHHHHHhhHH-HHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHH-HhCChhcHHHHHHhh
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKE-EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKA-QAVNLDTLDAKVSKL 242 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~l 242 (645)
|++|++.+++..||.||+...... ..... ..+ +.. .........+++.++
T Consensus 86 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~-------~~~---------------------~~~~~~~~~~~~~~~~~~~ 137 (257)
T 1g6h_A 86 RTFQTPQPLKEMTVLENLLIGEICPGESPL-------NSL---------------------FYKKWIPKEEEMVEKAFKI 137 (257)
T ss_dssp ECCCCCGGGGGSBHHHHHHGGGTSTTSCHH-------HHH---------------------HHCSSCCCCHHHHHHHHHH
T ss_pred EEccCCccCCCCcHHHHHHHHHhhhccCcc-------ccc---------------------ccccccCCHHHHHHHHHHH
Confidence 999999887889999998632110 00000 000 000 000111234567788
Q ss_pred chhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHH
Q 006442 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (645)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l 319 (645)
++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|+ +.|+|||+||||++++
T Consensus 138 l~~~~l~-~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~ 216 (257)
T 1g6h_A 138 LEFLKLS-HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIV 216 (257)
T ss_dssp HHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTT
T ss_pred HHHcCCc-hhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH
Confidence 8999996 67889999999999999999999999999999999999999999999988774 3489999999999999
Q ss_pred HhhcCeEEEEcCceeEEeccChHH
Q 006442 320 DQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 320 ~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
..+||+|+++++|++. +.|+..+
T Consensus 217 ~~~~d~v~~l~~G~i~-~~g~~~~ 239 (257)
T 1g6h_A 217 LNYIDHLYVMFNGQII-AEGRGEE 239 (257)
T ss_dssp GGGCSEEEEEETTEEE-EEEESHH
T ss_pred HHhCCEEEEEECCEEE-EEeCHHH
Confidence 9999999999999974 4455444
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-45 Score=378.92 Aligned_cols=206 Identities=28% Similarity=0.403 Sum_probs=178.9
Q ss_pred CcEEEEEeeeeeeCC-eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----------
Q 006442 422 RSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------- 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~-~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------- 489 (645)
.++|+++||+++|++ ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 5 ~~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred CcEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 357999999999975 46999999999999999999999999999999999999999999999998762
Q ss_pred -cchhccchhhcCCCCCCHHHHHHhhhccc------cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCC
Q 006442 490 -PNYFEQNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS 562 (645)
Q Consensus 490 -~~~~~q~~~~~l~~~~tv~e~v~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p 562 (645)
.+|++|++...+ +..||.+|+.+..... ..+.+.++|+.+++ .+..++++.+|||||||||+|||||+.+|
T Consensus 85 ~ig~v~Q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L-~~~~~~~~~~LSgGqkQRv~iAraL~~~P 162 (275)
T 3gfo_A 85 SIGIVFQDPDNQL-FSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGI-EHLKDKPTHCLSFGQKKRVAIAGVLVMEP 162 (275)
T ss_dssp SEEEECSSGGGTC-CSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTC-GGGTTSBGGGSCHHHHHHHHHHHHHTTCC
T ss_pred cEEEEEcCccccc-ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-chhhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 346677654333 4789999998764211 13457889999999 57789999999999999999999999999
Q ss_pred CeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 563 TLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 563 ~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||||++|++|+++. .|+.+++++
T Consensus 163 ~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~-~g~~~~~~~ 233 (275)
T 3gfo_A 163 KVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVIL-QGNPKEVFA 233 (275)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEE-EECHHHHTH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ECCHHHHhc
Confidence 999999999999999999999988754 4699999999999999999999999999985 577766543
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-45 Score=392.68 Aligned_cols=208 Identities=26% Similarity=0.377 Sum_probs=180.2
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------ceEEEEec
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------~~i~~v~Q 168 (645)
+|+++|++|+|++.++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++|.. ..||||+|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQ 82 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECT
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEec
Confidence 4999999999988889999999999999999999999999999999999999999999998743 35999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCC
Q 006442 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (645)
Q Consensus 169 ~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (645)
++.+++.+||+||+...... ...+..+.++++.++++.+|+
T Consensus 83 ~~~l~~~ltv~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~~l~~~~L 123 (362)
T 2it1_A 83 NWALYPHMTVYKNIAFPLEL---------------------------------------RKAPREEIDKKVREVAKMLHI 123 (362)
T ss_dssp TCCCCTTSCHHHHHHHHHHH---------------------------------------TTCCHHHHHHHHHHHHHHTTC
T ss_pred CcccCCCCCHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHHcCC
Confidence 99998999999998632110 001122334567888999999
Q ss_pred CcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcC
Q 006442 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (645)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d 324 (645)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .|.|+|+||||++++..+||
T Consensus 124 ~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ad 202 (362)
T 2it1_A 124 D-KLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMAD 202 (362)
T ss_dssp T-TCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCS
T ss_pred c-hHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC
Confidence 6 678999999999999999999999999999999999999999999999887743 48999999999999999999
Q ss_pred eEEEEcCceeEEeccChHHHH
Q 006442 325 KIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 325 ~i~~l~~G~~~~~~g~~~~~~ 345 (645)
+|++|++|++. ..|+..+.+
T Consensus 203 ri~vl~~G~i~-~~g~~~~~~ 222 (362)
T 2it1_A 203 RIAVIREGEIL-QVGTPDEVY 222 (362)
T ss_dssp EEEEEETTEEE-EEECHHHHH
T ss_pred EEEEEECCEEE-EEcCHHHHH
Confidence 99999999984 556655543
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=392.72 Aligned_cols=207 Identities=26% Similarity=0.398 Sum_probs=178.5
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------ceEEEEec
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------~~i~~v~Q 168 (645)
+|+++|++|+|++.++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++|.. ..||||+|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQ 82 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECS
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEec
Confidence 4899999999998889999999999999999999999999999999999999999999998743 35999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCC
Q 006442 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (645)
Q Consensus 169 ~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (645)
++.+++.+||+||+....... ..+..+.++++.++++.+|+
T Consensus 83 ~~~l~~~ltv~eni~~~~~~~---------------------------------------~~~~~~~~~~v~~~l~~~~L 123 (359)
T 2yyz_A 83 NYALYPHMTVFENIAFPLRAR---------------------------------------RISKDEVEKRVVEIARKLLI 123 (359)
T ss_dssp SCCCCTTSCHHHHHHGGGSSS---------------------------------------CSHHHHTTHHHHHHHHHTTC
T ss_pred CcccCCCCCHHHHHHHHHHhc---------------------------------------CCCHHHHHHHHHHHHHHcCC
Confidence 999989999999986432100 00001123457788899999
Q ss_pred CcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcC
Q 006442 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (645)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d 324 (645)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+..++.+.++|++ .|.|+|+||||++++..+||
T Consensus 124 ~-~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~ad 202 (359)
T 2yyz_A 124 D-NLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMAS 202 (359)
T ss_dssp G-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCS
T ss_pred c-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC
Confidence 6 678999999999999999999999999999999999999999999999887643 48999999999999999999
Q ss_pred eEEEEcCceeEEeccChHHH
Q 006442 325 KIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 325 ~i~~l~~G~~~~~~g~~~~~ 344 (645)
+|++|++|++. ..|+..+.
T Consensus 203 ri~vl~~G~i~-~~g~~~~l 221 (359)
T 2yyz_A 203 RIAVFNQGKLV-QYGTPDEV 221 (359)
T ss_dssp EEEEEETTEEE-EEECHHHH
T ss_pred EEEEEECCEEE-EeCCHHHH
Confidence 99999999984 55765544
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-45 Score=387.69 Aligned_cols=207 Identities=25% Similarity=0.350 Sum_probs=178.8
Q ss_pred CCCCcEEEEEeeeeeeCC----eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----
Q 006442 419 RSGRSVVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----- 489 (645)
Q Consensus 419 ~~~~~~i~~~~v~~~y~~----~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----- 489 (645)
....++|+++||++.|+. ..+|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 19 ~~~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~ 98 (366)
T 3tui_C 19 DDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSES 98 (366)
T ss_dssp ----CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHH
T ss_pred CCCCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHH
Confidence 345668999999999963 46899999999999999999999999999999999999999999999998763
Q ss_pred --------cchhccchhhcCCCCCCHHHHHHhhhcc------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHH
Q 006442 490 --------PNYFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFC 555 (645)
Q Consensus 490 --------~~~~~q~~~~~l~~~~tv~e~v~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lA 555 (645)
.+|++|+ ..+++.+||.+|+.+.... ...+++.++|+.+|+ .+..++++.+|||||||||+||
T Consensus 99 ~~~~~r~~Ig~v~Q~--~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL-~~~~~~~~~~LSGGqkQRVaIA 175 (366)
T 3tui_C 99 ELTKARRQIGMIFQH--FNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGL-GDKHDSYPSNLSGGQKQRVAIA 175 (366)
T ss_dssp HHHHHHTTEEEECSS--CCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC-GGGTTCCTTTSCHHHHHHHHHH
T ss_pred HHHHHhCcEEEEeCC--CccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-chHhcCChhhCCHHHHHHHHHH
Confidence 2455665 4677889999999876421 113457889999999 4778999999999999999999
Q ss_pred HHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
|||+.+|+||||||||++||+.++..+.++|++. +.|||+||||++++.++||||++|++|+++. .|+.++++
T Consensus 176 rAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~-~g~~~ev~ 252 (366)
T 3tui_C 176 RALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE-QDTVSEVF 252 (366)
T ss_dssp HHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-CCBHHHHH
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 9999999999999999999999999999998754 5699999999999999999999999999985 57766654
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-45 Score=392.02 Aligned_cols=208 Identities=29% Similarity=0.449 Sum_probs=179.8
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------------ce
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MK 162 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------------~~ 162 (645)
+|+++|++|+|++.++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++|.. ..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ 82 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCC
Confidence 4899999999998889999999999999999999999999999999999999999999987632 25
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhh
Q 006442 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (645)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (645)
||||+|++.+++.+||+||+...... ...+....++++.++
T Consensus 83 ig~v~Q~~~l~~~ltv~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~~ 123 (372)
T 1g29_1 83 IAMVFQSYALYPHMTVYDNIAFPLKL---------------------------------------RKVPRQEIDQRVREV 123 (372)
T ss_dssp EEEECSCCCCCTTSCHHHHHHHHHHH---------------------------------------TTCCHHHHHHHHHHH
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHH
Confidence 99999999998999999998632110 001122334567788
Q ss_pred chhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHH
Q 006442 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (645)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~ 318 (645)
++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.++|++ .|.|+|+||||+++
T Consensus 124 l~~~~L~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 202 (372)
T 1g29_1 124 AELLGLT-ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVE 202 (372)
T ss_dssp HHHHTCG-GGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred HHHCCCc-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHH
Confidence 9999996 678999999999999999999999999999999999999999999999887643 48999999999999
Q ss_pred HHhhcCeEEEEcCceeEEeccChHHHH
Q 006442 319 LDQLCTKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 319 l~~~~d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
+..+||+|++|++|++. ..|+..+.+
T Consensus 203 a~~~adri~vl~~G~i~-~~g~~~~l~ 228 (372)
T 1g29_1 203 AMTMGDRIAVMNRGVLQ-QVGSPDEVY 228 (372)
T ss_dssp HHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred HHHhCCEEEEEeCCEEE-EeCCHHHHH
Confidence 99999999999999984 557765544
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-45 Score=392.14 Aligned_cols=208 Identities=28% Similarity=0.402 Sum_probs=174.7
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------ceEEEEec
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------~~i~~v~Q 168 (645)
+|+++|++|+|++.++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++|.. ..||||+|
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 90 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQ 90 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEec
Confidence 5999999999998889999999999999999999999999999999999999999999998743 35999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCC
Q 006442 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (645)
Q Consensus 169 ~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (645)
++.+++.+||+||+....... ..+..+.++++.++++.+|+
T Consensus 91 ~~~l~~~ltv~eni~~~~~~~---------------------------------------~~~~~~~~~~v~~~l~~~~L 131 (372)
T 1v43_A 91 SYAVWPHMTVYENIAFPLKIK---------------------------------------KFPKDEIDKRVRWAAELLQI 131 (372)
T ss_dssp ------CCCHHHHHHTTCC-----------------------------------------CCCHHHHHHHHHHHHHHTTC
T ss_pred CcccCCCCCHHHHHHHHHHhc---------------------------------------CCCHHHHHHHHHHHHHHcCC
Confidence 999989999999986432100 01112334567788999999
Q ss_pred CcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcC
Q 006442 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (645)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d 324 (645)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .|.|+|+||||++++..+||
T Consensus 132 ~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ad 210 (372)
T 1v43_A 132 E-ELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGD 210 (372)
T ss_dssp G-GGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCS
T ss_pred h-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 6 678999999999999999999999999999999999999999999999887643 48999999999999999999
Q ss_pred eEEEEcCceeEEeccChHHHH
Q 006442 325 KIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 325 ~i~~l~~G~~~~~~g~~~~~~ 345 (645)
+|++|++|++. ..|+..+.+
T Consensus 211 ri~vl~~G~i~-~~g~~~~l~ 230 (372)
T 1v43_A 211 RIAVMNRGQLL-QIGSPTEVY 230 (372)
T ss_dssp EEEEEETTEEE-EEECHHHHH
T ss_pred EEEEEECCEEE-EeCCHHHHH
Confidence 99999999984 557655443
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-45 Score=373.90 Aligned_cols=204 Identities=25% Similarity=0.380 Sum_probs=177.4
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-------------
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------- 489 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------- 489 (645)
++|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 5 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 84 (262)
T 1b0u_A 5 NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 84 (262)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccC
Confidence 3699999999999889999999999999999999999999999999999999999999999998763
Q ss_pred ----------cchhccchhhcCCCCCCHHHHHHhhh-c--cc----cHHHHHHHHhhcCCChhh-hccCcCcCCHhHHHH
Q 006442 490 ----------PNYFEQNQAEALDLDKTVLETVAEAA-E--DW----RIDDIKGLLGRCNFKADM-LDRKVSLLSGGEKAR 551 (645)
Q Consensus 490 ----------~~~~~q~~~~~l~~~~tv~e~v~~~~-~--~~----~~~~~~~~L~~~~l~~~~-~~~~~~~LSgGqkqr 551 (645)
.+|++|+ ..+++..||.+|+.... . .. ..+.+.++|+.+|+. +. .++++.+||||||||
T Consensus 85 ~~~~~~~~~~i~~v~Q~--~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~LSgGq~qR 161 (262)
T 1b0u_A 85 KNQLRLLRTRLTMVFQH--FNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGID-ERAQGKYPVHLSGGQQQR 161 (262)
T ss_dssp HHHHHHHHHHEEEECSS--CCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCC-HHHHTSCGGGSCHHHHHH
T ss_pred hhhHHHHhcceEEEecC--cccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCC-chhhcCCcccCCHHHHHH
Confidence 1244444 35667789999998742 1 11 124577899999995 66 799999999999999
Q ss_pred HHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHH
Q 006442 552 LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQV 628 (645)
Q Consensus 552 v~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~ 628 (645)
|+|||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||||++|++|+++. .|+.+++
T Consensus 162 v~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 240 (262)
T 1b0u_A 162 VSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE-EGDPEQV 240 (262)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHH
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 99999999999999999999999999999999998764 5699999999999999999999999999985 4666665
Q ss_pred HH
Q 006442 629 QS 630 (645)
Q Consensus 629 ~~ 630 (645)
.+
T Consensus 241 ~~ 242 (262)
T 1b0u_A 241 FG 242 (262)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-45 Score=372.76 Aligned_cols=203 Identities=24% Similarity=0.389 Sum_probs=178.0
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc------------cc
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------PN 491 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------~~ 491 (645)
+|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~ 103 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVG 103 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEE
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEE
Confidence 699999999999889999999999999999999999999999999999999999999999998762 23
Q ss_pred hhccchhhcCCCCCCHHHHHHhhh-c--ccc----HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCe
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAA-E--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~-~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 564 (645)
|++|+ ..+++..||.+|+.+.. . ... .+++.++++.+++ .+..++++.+|||||||||+|||||+.+|++
T Consensus 104 ~v~Q~--~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L-~~~~~~~~~~LSgGqkQRv~lAraL~~~p~l 180 (263)
T 2olj_A 104 MVFQR--FNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGL-KDKAHAYPDSLSGGQAQRVAIARALAMEPKI 180 (263)
T ss_dssp EECSS--CCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTC-GGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEeCC--CcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-chHhcCChhhCCHHHHHHHHHHHHHHCCCCE
Confidence 45554 34667789999998742 1 111 2457789999999 4678999999999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 565 LVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 565 LlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|||||||++||+.++..+.+.|+++ +.|||+||||++++.++||++++|++|+++. .|+.+++.+
T Consensus 181 llLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~~ 248 (263)
T 2olj_A 181 MLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIE-EGKPEDLFD 248 (263)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHHHH
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHHh
Confidence 9999999999999999999998764 5699999999999999999999999999985 477776654
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-45 Score=391.57 Aligned_cols=208 Identities=25% Similarity=0.385 Sum_probs=179.4
Q ss_pred cEEEEeEEEEeCCee--eeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-------------c
Q 006442 97 GVKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------M 161 (645)
Q Consensus 97 ~i~i~nls~~y~~~~--vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-------------~ 161 (645)
+|+++|++|+|++.+ +|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++|.. .
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r 82 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence 599999999998877 9999999999999999999999999999999999999999999987632 2
Q ss_pred eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHh
Q 006442 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (645)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (645)
.||||+|++.+++.+||+||+...... ...+....++++.+
T Consensus 83 ~ig~v~Q~~~l~~~ltv~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~ 123 (353)
T 1oxx_K 83 KIGMVFQTWALYPNLTAFENIAFPLTN---------------------------------------MKMSKEEIRKRVEE 123 (353)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTT---------------------------------------SSCCHHHHHHHHHH
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHH
Confidence 599999999998999999998643210 00111233456778
Q ss_pred hchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHH
Q 006442 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRA 317 (645)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~ 317 (645)
+++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.++|++ .|+|+|+||||++
T Consensus 124 ~l~~~~L~-~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 202 (353)
T 1oxx_K 124 VAKILDIH-HVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA 202 (353)
T ss_dssp HHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred HHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 89999996 678999999999999999999999999999999999999999999999887643 4899999999999
Q ss_pred HHHhhcCeEEEEcCceeEEeccChHHHH
Q 006442 318 FLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 318 ~l~~~~d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
++..+||+|++|++|++. ..|+..+.+
T Consensus 203 ~~~~~adri~vl~~G~i~-~~g~~~~l~ 229 (353)
T 1oxx_K 203 DIFAIADRVGVLVKGKLV-QVGKPEDLY 229 (353)
T ss_dssp HHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred HHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 999999999999999984 556655443
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-45 Score=386.16 Aligned_cols=203 Identities=26% Similarity=0.433 Sum_probs=178.7
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc------------cc
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------PN 491 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------~~ 491 (645)
+|+++|++++|+++.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++. .+
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig 83 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLG 83 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCE
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEE
Confidence 599999999999999999999999999999999999999999999999999999999999998761 24
Q ss_pred hhccchhhcCCCCCCHHHHHHhhhcc------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeE
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 565 (645)
|++|+ ..+++.+||.+|+.++... ...+++.++|+.+++ .+..++++.+|||||||||+|||||+.+|++|
T Consensus 84 ~vfQ~--~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL-~~~~~r~~~~LSGGq~QRValArAL~~~P~lL 160 (359)
T 3fvq_A 84 YLVQE--GVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGI-SELAGRYPHELSGGQQQRAALARALAPDPELI 160 (359)
T ss_dssp EECTT--CCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTC-GGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEeCC--CcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCC-chHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 55654 4677899999999986431 123467889999999 57889999999999999999999999999999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHH----hcCceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 566 VLDEPTNHLDIPSKEMLEEAIS----EYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 566 lLDEPt~~LD~~s~~~l~~~l~----~~~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
||||||++||+.++..+.+.|. +.+.|||+||||++++..+||||++|++|+++. .|+.+++..
T Consensus 161 LLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~-~g~~~el~~ 228 (359)
T 3fvq_A 161 LLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQ-TASPHELYR 228 (359)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEE-EECHHHHHH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEE-EeCHHHHHh
Confidence 9999999999999998887554 346799999999999999999999999999985 466666543
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-45 Score=386.23 Aligned_cols=203 Identities=27% Similarity=0.407 Sum_probs=176.1
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc--------eEEEEec
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQ 168 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~--------~i~~v~Q 168 (645)
+|+++|++|+|++. +|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++|... .|||++|
T Consensus 1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q 79 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEec
Confidence 38999999999888 99999999999999999999999999999999999999999999987532 5999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCC
Q 006442 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (645)
Q Consensus 169 ~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (645)
++.+++.+||+||+...... ...+. . +++.++++.+|+
T Consensus 80 ~~~l~~~ltv~enl~~~~~~---------------------------------------~~~~~-~--~~v~~~l~~~~L 117 (348)
T 3d31_A 80 NYSLFPHMNVKKNLEFGMRM---------------------------------------KKIKD-P--KRVLDTARDLKI 117 (348)
T ss_dssp TCCCCTTSCHHHHHHHHHHH---------------------------------------HCCCC-H--HHHHHHHHHTTC
T ss_pred CcccCCCCCHHHHHHHHHHH---------------------------------------cCCCH-H--HHHHHHHHHcCC
Confidence 99998999999998632110 00111 1 456788889999
Q ss_pred CcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcC
Q 006442 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCT 324 (645)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d 324 (645)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+..++.+.++|+ +.|+|+|+||||++++..+||
T Consensus 118 ~-~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~ad 196 (348)
T 3d31_A 118 E-HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMAD 196 (348)
T ss_dssp T-TTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCS
T ss_pred c-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 6 67899999999999999999999999999999999999999999999988764 358999999999999999999
Q ss_pred eEEEEcCceeEEeccChHHH
Q 006442 325 KIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 325 ~i~~l~~G~~~~~~g~~~~~ 344 (645)
+|++|++|++. ..|+..+.
T Consensus 197 ri~vl~~G~i~-~~g~~~~~ 215 (348)
T 3d31_A 197 RIAVVMDGKLI-QVGKPEEI 215 (348)
T ss_dssp EEEEESSSCEE-EEECHHHH
T ss_pred EEEEEECCEEE-EECCHHHH
Confidence 99999999984 45665443
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=371.33 Aligned_cols=204 Identities=26% Similarity=0.413 Sum_probs=179.3
Q ss_pred CcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------cc
Q 006442 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PN 491 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~ 491 (645)
.++|+++|+++.|+++++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 9 ~~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 9 VALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp CCEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred cceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence 35899999999999999999999999999999999999999999999999999999999999998863 23
Q ss_pred hhccchhhcCCCCCCHHHHHHhhhcc----ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHcc------C
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAAED----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK------P 561 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~------~ 561 (645)
|+.|+ ..+.+..||.+|+...... ...+.+.++++.+++. +..++++.+|||||||||+|||||++ +
T Consensus 89 ~v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~ 165 (266)
T 4g1u_C 89 VMRQY--SELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCL-ALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPT 165 (266)
T ss_dssp EECSC--CCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCS-TTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCC
T ss_pred EEecC--CccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHHHHHHhcccccCCC
Confidence 44544 3455778999999876432 2245688899999994 67899999999999999999999999 9
Q ss_pred CCeEEeeCCCCCCCHHHHHHHHHHHHhc---C-ceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 562 STLLVLDEPTNHLDIPSKEMLEEAISEY---K-GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 562 p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~-~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
|++|||||||+|||+.++..+.+.|+++ + .|||+||||++++..+||||++|++|+++. .|+.+++.
T Consensus 166 p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~-~g~~~~~~ 236 (266)
T 4g1u_C 166 PRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVA-CGTPEEVL 236 (266)
T ss_dssp CEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHHC
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE-EcCHHHHh
Confidence 9999999999999999999999998765 3 499999999999999999999999999985 47776654
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-44 Score=361.35 Aligned_cols=194 Identities=27% Similarity=0.389 Sum_probs=170.6
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-------------
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------- 489 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------- 489 (645)
++|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 3 ~~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 82 (224)
T 2pcj_A 3 EILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82 (224)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred cEEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhC
Confidence 3799999999999888999999999999999999999999999999999999999999999998762
Q ss_pred -cchhccchhhcCCCCCCHHHHHHhhhcc------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCC
Q 006442 490 -PNYFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS 562 (645)
Q Consensus 490 -~~~~~q~~~~~l~~~~tv~e~v~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p 562 (645)
.+|++|+ ..+.+..|+.+|+...... ...+.+.++++.+++. +..++++.+|||||||||+|||||+.+|
T Consensus 83 ~i~~v~q~--~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~p 159 (224)
T 2pcj_A 83 KLGFVFQF--HYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLG-DKLSRKPYELSGGEQQRVAIARALANEP 159 (224)
T ss_dssp HEEEECSS--CCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-TCTTCCGGGSCHHHHHHHHHHHHTTTCC
T ss_pred cEEEEecC--cccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 1244443 3566778999999875321 1134578899999994 6789999999999999999999999999
Q ss_pred CeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEe
Q 006442 563 TLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (645)
Q Consensus 563 ~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~ 620 (645)
++|||||||++||+.++..+.+.|+++ +.|||+||||++++ .+||++++|++|+++.
T Consensus 160 ~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~ 219 (224)
T 2pcj_A 160 ILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVG 219 (224)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEE
Confidence 999999999999999999999998764 56999999999998 7899999999999975
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-45 Score=369.78 Aligned_cols=206 Identities=20% Similarity=0.299 Sum_probs=173.2
Q ss_pred cEEEEeEEEEeC-CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCCC
Q 006442 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (645)
Q Consensus 97 ~i~i~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~ 175 (645)
+|+++|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+ ...|+|++|++.+++.
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~---~~~i~~v~q~~~~~~~ 80 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV---YQSIGFVPQFFSSPFA 80 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE---CSCEEEECSCCCCSSC
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE---eccEEEEcCCCccCCC
Confidence 599999999998 788999999999999999999999999999999999999999999984 3469999999988888
Q ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccc
Q 006442 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (645)
Q Consensus 176 ~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~ 255 (645)
.||+||+....... ... ........++++.++++.+|+. +..++
T Consensus 81 ~tv~enl~~~~~~~--------------~~~---------------------~~~~~~~~~~~~~~~l~~~~l~-~~~~~ 124 (253)
T 2nq2_C 81 YSVLDIVLMGRSTH--------------INT---------------------FAKPKSHDYQVAMQALDYLNLT-HLAKR 124 (253)
T ss_dssp CBHHHHHHGGGGGG--------------SCT---------------------TCCCCHHHHHHHHHHHHHTTCG-GGTTS
T ss_pred CCHHHHHHHhhhhh--------------ccc---------------------ccCCCHHHHHHHHHHHHHcCCh-HHhcC
Confidence 99999986321000 000 0000011234567788888986 57789
Q ss_pred cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---C-CCeEEEEecCHHHHHhhcCeEEEEcC
Q 006442 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---Q-DVPMVIISHDRAFLDQLCTKIVETEM 331 (645)
Q Consensus 256 ~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~-g~tvIivsHd~~~l~~~~d~i~~l~~ 331 (645)
++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++ . |+|||++|||++++..+||+++++++
T Consensus 125 ~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~ 204 (253)
T 2nq2_C 125 EFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNK 204 (253)
T ss_dssp BGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEET
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999887743 3 89999999999999999999999999
Q ss_pred ceeEEeccChHH
Q 006442 332 GVSRTYEGNYSQ 343 (645)
Q Consensus 332 G~~~~~~g~~~~ 343 (645)
|+ .+.|+..+
T Consensus 205 G~--~~~g~~~~ 214 (253)
T 2nq2_C 205 QN--FKFGETRN 214 (253)
T ss_dssp TE--EEEEEHHH
T ss_pred Ce--EecCCHHH
Confidence 98 45566443
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-45 Score=377.80 Aligned_cols=212 Identities=25% Similarity=0.380 Sum_probs=175.1
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc------------e
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------K 162 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~------------~ 162 (645)
.++|+++|++|+|+++++|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.+. .
T Consensus 19 ~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 98 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQH 98 (279)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTT
T ss_pred CceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCc
Confidence 3469999999999988999999999999999999999999999999999999999999999987532 4
Q ss_pred EEEEeccCccCC--CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHH
Q 006442 163 IAFLSQEFEVSM--SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (645)
Q Consensus 163 i~~v~Q~~~~~~--~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 240 (645)
|+|++|++.+.+ ..||+||+.......... . ........+++.
T Consensus 99 i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~-------~----------------------------~~~~~~~~~~~~ 143 (279)
T 2ihy_A 99 IGFVSHSLLEKFQEGERVIDVVISGAFKSIGV-------Y----------------------------QDIDDEIRNEAH 143 (279)
T ss_dssp EEEECHHHHTTSCTTSBHHHHHHTTC--------------------------------------------CCHHHHHHHH
T ss_pred EEEEEcCcccccCCCCCHHHHHHhhhhhcccc-------c----------------------------cCCcHHHHHHHH
Confidence 999999986434 459999986431100000 0 000112234567
Q ss_pred hhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCeE--EEEecC
Q 006442 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPM--VIISHD 315 (645)
Q Consensus 241 ~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tv--IivsHd 315 (645)
++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|++ .|+|| |+||||
T Consensus 144 ~~l~~~gl~-~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd 222 (279)
T 2ihy_A 144 QLLKLVGMS-AKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHF 222 (279)
T ss_dssp HHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred HHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecC
Confidence 788889995 678899999999999999999999999999999999999999999999988743 38899 999999
Q ss_pred HHHHHhhcCeEEEEcCceeEEeccChHH
Q 006442 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 316 ~~~l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
++++..+||+|++|++|++. +.|+..+
T Consensus 223 ~~~~~~~~d~v~~l~~G~i~-~~g~~~~ 249 (279)
T 2ihy_A 223 IEEITANFSKILLLKDGQSI-QQGAVED 249 (279)
T ss_dssp GGGCCTTCCEEEEEETTEEE-EEEEHHH
T ss_pred HHHHHHhCCEEEEEECCEEE-EECCHHH
Confidence 99999999999999999974 4566543
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=364.76 Aligned_cols=195 Identities=27% Similarity=0.384 Sum_probs=168.6
Q ss_pred EEEEEeeeeeeCC----eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------
Q 006442 424 VVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~----~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (645)
+|+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 4899999999973 46999999999999999999999999999999999999999999999998752
Q ss_pred ----cchhccchhhcCCCCCCHHHHHHhhhc-----c----ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHH
Q 006442 490 ----PNYFEQNQAEALDLDKTVLETVAEAAE-----D----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK 556 (645)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~v~~~~~-----~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAr 556 (645)
.+|++|+ +.+++..||.+|+..... . ...+++.++|+.+++.....++++.+|||||||||+|||
T Consensus 81 ~~~~i~~v~Q~--~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAr 158 (235)
T 3tif_A 81 RRDKIGFVFQQ--FNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIAR 158 (235)
T ss_dssp HHHHEEEECTT--CCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred hhccEEEEecC--CccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHH
Confidence 2355554 456678899999987431 1 113457789999999643458999999999999999999
Q ss_pred HHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEee
Q 006442 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDY 621 (645)
Q Consensus 557 al~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~ 621 (645)
||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++.+ .+||||++|++|++...
T Consensus 159 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~ 226 (235)
T 3tif_A 159 ALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVERE 226 (235)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEEE
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999998754 56999999999965 78999999999999863
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-44 Score=365.16 Aligned_cols=204 Identities=21% Similarity=0.305 Sum_probs=176.0
Q ss_pred CcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----------c
Q 006442 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------P 490 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~ 490 (645)
.++|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 4 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 83 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred CceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence 45799999999999888999999999999999999999999999999999999999999999998762 2
Q ss_pred chhccchhhcCCCCCCHHHHHHhhhc---ccc--HHHHHHHHhhcC-CChhhhccCcCcCCHhHHHHHHHHHHHccCCCe
Q 006442 491 NYFEQNQAEALDLDKTVLETVAEAAE---DWR--IDDIKGLLGRCN-FKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (645)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~v~~~~~---~~~--~~~~~~~L~~~~-l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 564 (645)
+|++|+ ..+++..|+.||+..... ... .+.+.++++.++ + .+..++++.+|||||||||+|||||+.+|++
T Consensus 84 ~~v~q~--~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~~~~LSgGq~qrv~lAraL~~~p~l 160 (240)
T 1ji0_A 84 ALVPEG--RRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRL-KERLKQLGGTLSGGEQQMLAIGRALMSRPKL 160 (240)
T ss_dssp EEECSS--CCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHH-HTTTTSBSSSSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEEecC--CccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccH-hhHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 345554 356677899999987531 111 234677888884 7 4667899999999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 565 LVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 565 LlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
|||||||++||+.++..+.+.|+++ +.|||+||||++++..+|||+++|++|+++. .|+.+++.
T Consensus 161 llLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 227 (240)
T 1ji0_A 161 LMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVL-EGKASELL 227 (240)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEE-EEEHHHHH
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-EcCHHHHh
Confidence 9999999999999999999999765 4699999999999999999999999999985 46666654
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-44 Score=384.60 Aligned_cols=202 Identities=28% Similarity=0.441 Sum_probs=179.3
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cchhcc
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~q 495 (645)
+|+++||+++|+++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++. .+|++|
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ 82 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 82 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECT
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEec
Confidence 489999999999999999999999999999999999999999999999999999999999998763 346666
Q ss_pred chhhcCCCCCCHHHHHHhhhcc------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeC
Q 006442 496 NQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (645)
Q Consensus 496 ~~~~~l~~~~tv~e~v~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 569 (645)
+ ..+++.+||.+|+.++... ...+++.++|+.+++ .+..++++.+|||||||||+|||||+.+|+||||||
T Consensus 83 ~--~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDE 159 (381)
T 3rlf_A 83 S--YALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQL-AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE 159 (381)
T ss_dssp T--CCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTC-GGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred C--CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-chhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 5 4678899999999876431 113467889999999 578899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 570 PTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 570 Pt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
||++||+..+..+.+.|+++ +.|+|+||||++++..+||||++|++|+++. .|+.+++.
T Consensus 160 Pts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~-~g~~~~l~ 222 (381)
T 3rlf_A 160 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ-VGKPLELY 222 (381)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred CCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-EeCHHHHH
Confidence 99999999999999888754 6799999999999999999999999999986 46666554
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-45 Score=367.01 Aligned_cols=201 Identities=27% Similarity=0.367 Sum_probs=171.9
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------ceEEEEecc
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------~~i~~v~Q~ 169 (645)
|+++|++|+|++ +|+|+||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|||++|+
T Consensus 2 l~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (240)
T 2onk_A 2 FLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQD 78 (240)
T ss_dssp CEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSS
T ss_pred EEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCC
Confidence 789999999976 49999999999 9999999999999999999999999999999998742 259999999
Q ss_pred CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCC
Q 006442 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (645)
Q Consensus 170 ~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (645)
+.+++..||+||+...... ......++++.++++.+|+.
T Consensus 79 ~~l~~~ltv~enl~~~~~~-----------------------------------------~~~~~~~~~~~~~l~~~~l~ 117 (240)
T 2onk_A 79 YALFPHLSVYRNIAYGLRN-----------------------------------------VERVERDRRVREMAEKLGIA 117 (240)
T ss_dssp CCCCTTSCHHHHHHTTCTT-----------------------------------------SCHHHHHHHHHHHHHTTTCT
T ss_pred CccCCCCcHHHHHHHHHHH-----------------------------------------cCCchHHHHHHHHHHHcCCH
Confidence 9888888999998632110 00000134566788889986
Q ss_pred cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCe
Q 006442 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (645)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d~ 325 (645)
+..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|++ .|+|||++|||++++..+||+
T Consensus 118 -~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~ 196 (240)
T 2onk_A 118 -HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADE 196 (240)
T ss_dssp -TTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSE
T ss_pred -HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 578899999999999999999999999999999999999999999999888743 389999999999999999999
Q ss_pred EEEEcCceeEEeccChHHH
Q 006442 326 IVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 326 i~~l~~G~~~~~~g~~~~~ 344 (645)
++++++|++. ..|+..+.
T Consensus 197 i~~l~~G~i~-~~g~~~~~ 214 (240)
T 2onk_A 197 VAVMLNGRIV-EKGKLKEL 214 (240)
T ss_dssp EEEEETTEEE-EEECHHHH
T ss_pred EEEEECCEEE-EECCHHHH
Confidence 9999999984 45665543
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=374.18 Aligned_cols=207 Identities=21% Similarity=0.314 Sum_probs=176.6
Q ss_pred CCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----------
Q 006442 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------- 489 (645)
Q Consensus 421 ~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------- 489 (645)
...+|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 18 ~~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp -CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred CCceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 455799999999999889999999999999999999999999999999999999999999999997653
Q ss_pred -cchhccchhhcCCCCCCHHHHHHhhhc-------ccc---HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHH
Q 006442 490 -PNYFEQNQAEALDLDKTVLETVAEAAE-------DWR---IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (645)
Q Consensus 490 -~~~~~q~~~~~l~~~~tv~e~v~~~~~-------~~~---~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral 558 (645)
.+|++|+....+....||.||+..... ... .+++.++|+.+|+ .+..++++.+|||||||||+|||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~LSgGqkqRv~lAraL 176 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGM-SAKAQQYIGYLSTGEKQRVMIARAL 176 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTC-GGGTTSBGGGSCHHHHHHHHHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCC-hhHhcCChhhCCHHHHHHHHHHHHH
Confidence 245565532223335699999986421 011 2457789999999 4678999999999999999999999
Q ss_pred ccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceE--EEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTV--ITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tv--i~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
+.+|++|||||||++||+.+++.+.+.|+++ +.|| |+||||++++..+||+|++|++|+++. .|+.+++.
T Consensus 177 ~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 251 (279)
T 2ihy_A 177 MGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQ-QGAVEDIL 251 (279)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEE-EEEHHHHC
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEE-ECCHHHHh
Confidence 9999999999999999999999999999765 5699 999999999999999999999999985 46666653
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-44 Score=369.60 Aligned_cols=202 Identities=20% Similarity=0.290 Sum_probs=176.4
Q ss_pred CcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----------c
Q 006442 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------P 490 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~ 490 (645)
.++|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 5 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 5 MEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp CEEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred CcEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 34799999999999889999999999999999999999999999999999999999999999998762 2
Q ss_pred chhccchhhcCCCCCCHHHHHHhhhcc---------------c-c---HHHHHHHHhhcCCChhhhccCcCcCCHhHHHH
Q 006442 491 NYFEQNQAEALDLDKTVLETVAEAAED---------------W-R---IDDIKGLLGRCNFKADMLDRKVSLLSGGEKAR 551 (645)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~v~~~~~~---------------~-~---~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqr 551 (645)
+|++|+. .+.+..||.||+...... . . ...+.++++.+|+ .+..++++.+||||||||
T Consensus 85 ~~v~q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSgGqkQr 161 (257)
T 1g6h_A 85 VRTFQTP--QPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKL-SHLYDRKAGELSGGQMKL 161 (257)
T ss_dssp EECCCCC--GGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTC-GGGTTSBGGGSCHHHHHH
T ss_pred EEEccCC--ccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCC-chhhCCCchhCCHHHHHH
Confidence 3455543 455678999999875321 1 1 2357789999999 467899999999999999
Q ss_pred HHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhH
Q 006442 552 LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQ 627 (645)
Q Consensus 552 v~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~ 627 (645)
|+|||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+|||+++|++|+++. .|+.++
T Consensus 162 v~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~ 239 (257)
T 1g6h_A 162 VEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA-EGRGEE 239 (257)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE-EEESHH
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-EeCHHH
Confidence 99999999999999999999999999999999999765 5699999999999999999999999999985 466666
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-44 Score=379.93 Aligned_cols=208 Identities=26% Similarity=0.395 Sum_probs=181.5
Q ss_pred CCCCcEEEEEeeeeee-CCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------
Q 006442 419 RSGRSVVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------- 489 (645)
Q Consensus 419 ~~~~~~i~~~~v~~~y-~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------- 489 (645)
..+..+|+++|++++| +++.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++.
T Consensus 9 ~~~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ 88 (355)
T 1z47_A 9 HHGSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRN 88 (355)
T ss_dssp --CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSS
T ss_pred cCCCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCc
Confidence 3466789999999999 8778999999999999999999999999999999999999999999999998762
Q ss_pred cchhccchhhcCCCCCCHHHHHHhhhcc--c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCC
Q 006442 490 PNYFEQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (645)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~v~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 563 (645)
.+|++|+ ..+++.+||.+|+.+.... . ..+++.++|+.+++ .+..++++.+|||||||||+|||||+.+|+
T Consensus 89 ig~v~Q~--~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL-~~~~~r~~~~LSGGq~QRvalArAL~~~P~ 165 (355)
T 1z47_A 89 VGLVFQN--YALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRL-ESYANRFPHELSGGQQQRVALARALAPRPQ 165 (355)
T ss_dssp EEEECGG--GCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC-GGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEEEecC--cccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-hhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 2456665 4577889999999875421 1 13457889999999 578899999999999999999999999999
Q ss_pred eEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 564 LLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 564 lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
+|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||||++|++|++.. .|+.+++.+
T Consensus 166 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~l~~ 235 (355)
T 1z47_A 166 VLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQ-FGTPEEVYE 235 (355)
T ss_dssp EEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHHh
Confidence 99999999999999999999988754 5699999999999999999999999999985 466666543
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-44 Score=365.83 Aligned_cols=205 Identities=22% Similarity=0.351 Sum_probs=177.8
Q ss_pred CcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---------cch
Q 006442 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNY 492 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------~~~ 492 (645)
-++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 13 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~ 92 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 92 (256)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEE
T ss_pred CCeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEE
Confidence 45699999999999889999999999999999999999999999999999999999999999998763 245
Q ss_pred hccchhhcCCCCCCHHHHHHhhhc--ccc----HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEE
Q 006442 493 FEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (645)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~v~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 566 (645)
++|+ ..+.+..|+.+|+..... ... .+++.++++.+++ .+..++++.+|||||||||+|||||+.+|++||
T Consensus 93 v~q~--~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL-~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lll 169 (256)
T 1vpl_A 93 LPEE--AGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGL-GEKIKDRVSTYSKGMVRKLLIARALMVNPRLAI 169 (256)
T ss_dssp ECTT--CCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC-GGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EcCC--CCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-chHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 5554 345677899999976432 111 2457789999999 467899999999999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 567 LDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 567 LDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++. .|+.+++.+
T Consensus 170 LDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~~ 235 (256)
T 1vpl_A 170 LDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVE-TGTVEELKE 235 (256)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEE-EEEHHHHHH
T ss_pred EeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEE-ecCHHHHHH
Confidence 99999999999999999999765 4699999999999999999999999999985 466666543
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-44 Score=371.04 Aligned_cols=206 Identities=26% Similarity=0.346 Sum_probs=173.9
Q ss_pred cEEEEeEEEEeC--C---eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-------ceEE
Q 006442 97 GVKLENISKSYK--G---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIA 164 (645)
Q Consensus 97 ~i~i~nls~~y~--~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-------~~i~ 164 (645)
+|+++|++|+|+ + +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..|+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 489999999997 4 679999999999999999999999999999999999999999999998753 2599
Q ss_pred EEeccC-ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhc
Q 006442 165 FLSQEF-EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (645)
Q Consensus 165 ~v~Q~~-~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (645)
|++|++ ..++..||+||+...... . .......+++.+++
T Consensus 82 ~v~q~~~~~~~~~tv~enl~~~~~~---------------------------------------~-~~~~~~~~~~~~~l 121 (266)
T 2yz2_A 82 IAFQYPEDQFFAERVFDEVAFAVKN---------------------------------------F-YPDRDPVPLVKKAM 121 (266)
T ss_dssp EECSSGGGGCCCSSHHHHHHHTTTT---------------------------------------T-CTTSCSHHHHHHHH
T ss_pred EEeccchhhcCCCcHHHHHHHHHHh---------------------------------------c-CCHHHHHHHHHHHH
Confidence 999996 455678999998532100 0 01112234567788
Q ss_pred hhcCCCc-ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHH
Q 006442 244 PELGFTA-DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (645)
Q Consensus 244 ~~lgl~~-~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l 319 (645)
+.+|+.. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+ +.|+|||+||||++++
T Consensus 122 ~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~ 201 (266)
T 2yz2_A 122 EFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETV 201 (266)
T ss_dssp HHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTT
T ss_pred HHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 8899852 46789999999999999999999999999999999999999999999988774 2489999999999999
Q ss_pred HhhcCeEEEEcCceeEEeccChHH
Q 006442 320 DQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 320 ~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
..+||+++++++|++. +.|+..+
T Consensus 202 ~~~~d~v~~l~~G~i~-~~g~~~~ 224 (266)
T 2yz2_A 202 INHVDRVVVLEKGKKV-FDGTRME 224 (266)
T ss_dssp GGGCSEEEEEETTEEE-EEEEHHH
T ss_pred HHhCCEEEEEECCEEE-EeCCHHH
Confidence 9999999999999873 4565443
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=368.52 Aligned_cols=209 Identities=24% Similarity=0.309 Sum_probs=170.1
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcC--CCCCccEEEEcCCCc-----------eE
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ--EEPDSGNVIKAKSNM-----------KI 163 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~--~~p~~G~I~~~~~~~-----------~i 163 (645)
+|+++|++|+|+++++|+|+||+|++|++++|+||||||||||+++|+|+ ++|++|+|.++|.+. .+
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i 82 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGL 82 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTB
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcE
Confidence 58999999999988999999999999999999999999999999999998 789999999987431 38
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhc
Q 006442 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (645)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (645)
+|++|++.+++..||+||+....... ... ........+++.+++
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~--------------~~~----------------------~~~~~~~~~~~~~~l 126 (250)
T 2d2e_A 83 FLAFQYPVEVPGVTIANFLRLALQAK--------------LGR----------------------EVGVAEFWTKVKKAL 126 (250)
T ss_dssp CCCCCCCC-CCSCBHHHHHHHHHHHH--------------HTS----------------------CCCHHHHHHHHHHHH
T ss_pred EEeccCCccccCCCHHHHHHHHHHhh--------------ccc----------------------cCCHHHHHHHHHHHH
Confidence 99999998888899999985321100 000 001112234566788
Q ss_pred hhcCCCcccccccCCC-CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHH
Q 006442 244 PELGFTADDGDRLVAS-FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (645)
Q Consensus 244 ~~lgl~~~~~~~~~~~-LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l 319 (645)
+.+|+..+..++++.+ |||||||||+|||||+.+|++|||||||+|||+.+++.+.++|+ +.|+|||+||||++++
T Consensus 127 ~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~ 206 (250)
T 2d2e_A 127 ELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRIL 206 (250)
T ss_dssp HHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGG
T ss_pred HHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 8899954678899999 99999999999999999999999999999999999999988874 3589999999999999
Q ss_pred Hhh-cCeEEEEcCceeEEeccChH
Q 006442 320 DQL-CTKIVETEMGVSRTYEGNYS 342 (645)
Q Consensus 320 ~~~-~d~i~~l~~G~~~~~~g~~~ 342 (645)
..+ ||+|+++++|++. ..|+..
T Consensus 207 ~~~~~d~v~~l~~G~i~-~~g~~~ 229 (250)
T 2d2e_A 207 NYIQPDKVHVMMDGRVV-ATGGPE 229 (250)
T ss_dssp GTSCCSEEEEEETTEEE-EEESHH
T ss_pred HHhcCCEEEEEECCEEE-EEeCHH
Confidence 988 5999999999984 456543
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-43 Score=377.97 Aligned_cols=203 Identities=27% Similarity=0.413 Sum_probs=179.3
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cchhcc
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~q 495 (645)
+|+++|++++|+++.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++. .+|++|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQ 82 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECS
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEec
Confidence 489999999999888999999999999999999999999999999999999999999999998762 245565
Q ss_pred chhhcCCCCCCHHHHHHhhhccc------cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeC
Q 006442 496 NQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (645)
Q Consensus 496 ~~~~~l~~~~tv~e~v~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 569 (645)
+ ..+++.+||.+|+.+..... ..+++.++|+.+++ .+..++++.+|||||||||+|||||+.+|++|||||
T Consensus 83 ~--~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDE 159 (359)
T 2yyz_A 83 N--YALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLI-DNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDE 159 (359)
T ss_dssp S--CCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTC-GGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred C--cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-chHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 4 45778899999999864321 12457889999999 577899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 570 PTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 570 Pt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
||++||+.++..+.+.|+++ +.|+|+||||++++..+||||++|++|++.. .|+.+++.+
T Consensus 160 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~-~g~~~~l~~ 223 (359)
T 2yyz_A 160 PLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQ-YGTPDEVYD 223 (359)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHHh
Confidence 99999999999999988754 5699999999999999999999999999985 467666543
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-44 Score=366.16 Aligned_cols=215 Identities=19% Similarity=0.255 Sum_probs=175.5
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcC--CCCCccEEEEcCCCc-----------e
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ--EEPDSGNVIKAKSNM-----------K 162 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~--~~p~~G~I~~~~~~~-----------~ 162 (645)
++|+++|++|+|+++++|+|+||+|++|++++|+||||||||||+|+|+|+ ++|++|+|.++|.+. .
T Consensus 19 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 98 (267)
T 2zu0_C 19 HMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEG 98 (267)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHT
T ss_pred ceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCC
Confidence 469999999999988999999999999999999999999999999999999 468999999987431 3
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhh
Q 006442 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (645)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (645)
|+|++|++.+++..|+.+|+....... ..... . ...+.....+++.++
T Consensus 99 i~~v~Q~~~l~~~~tv~e~~~~~~~~~----------~~~~~-~---------------------~~~~~~~~~~~~~~~ 146 (267)
T 2zu0_C 99 IFMAFQYPVEIPGVSNQFFLQTALNAV----------RSYRG-Q---------------------ETLDRFDFQDLMEEK 146 (267)
T ss_dssp EEEECSSCCCCTTCBHHHHHHHHHHHH----------HHGGG-C---------------------CCCCHHHHHHHHHHH
T ss_pred EEEEccCccccccccHHHHHHHHHHhh----------hhhhc-c---------------------ccCCHHHHHHHHHHH
Confidence 999999998888899999985321100 00000 0 000111234567788
Q ss_pred chhcCCCcccccccCC-CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHH
Q 006442 243 MPELGFTADDGDRLVA-SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAF 318 (645)
Q Consensus 243 l~~lgl~~~~~~~~~~-~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~ 318 (645)
++.+|+.....++++. +|||||||||+|||||+.+|+||||||||+|||+.+++++.++|++ .|+|||+||||+++
T Consensus 147 l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~ 226 (267)
T 2zu0_C 147 IALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI 226 (267)
T ss_dssp HHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGG
T ss_pred HHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHH
Confidence 8999996556788887 5999999999999999999999999999999999999999998753 48999999999999
Q ss_pred HHhh-cCeEEEEcCceeEEeccChHH
Q 006442 319 LDQL-CTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 319 l~~~-~d~i~~l~~G~~~~~~g~~~~ 343 (645)
+..+ ||+++++++|++. +.|+..+
T Consensus 227 ~~~~~~d~v~~l~~G~i~-~~g~~~~ 251 (267)
T 2zu0_C 227 LDYIKPDYVHVLYQGRIV-KSGDFTL 251 (267)
T ss_dssp GGTSCCSEEEEEETTEEE-EEECTTH
T ss_pred HHhhcCCEEEEEECCEEE-EEcCHHH
Confidence 9886 9999999999984 4565443
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=378.03 Aligned_cols=203 Identities=28% Similarity=0.394 Sum_probs=178.8
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cchhcc
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~q 495 (645)
+|+++|++++|+++.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++. .+|++|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQ 82 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECT
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEec
Confidence 489999999999888999999999999999999999999999999999999999999999998762 245565
Q ss_pred chhhcCCCCCCHHHHHHhhhcc--c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeC
Q 006442 496 NQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (645)
Q Consensus 496 ~~~~~l~~~~tv~e~v~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 569 (645)
+ ..+++.+||.+|+.++... . ..+++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||
T Consensus 83 ~--~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE 159 (362)
T 2it1_A 83 N--WALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHID-KLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDE 159 (362)
T ss_dssp T--CCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-TCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred C--cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 4 4577889999999876421 1 124578899999994 67899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 570 PTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 570 Pt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
||++||+.++..+.+.|+++ +.|+|+||||++++..+||||++|++|++.. .|+.+++..
T Consensus 160 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~~~~ 223 (362)
T 2it1_A 160 PLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQ-VGTPDEVYY 223 (362)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHHh
Confidence 99999999999999988754 5699999999999999999999999999985 466666543
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=358.07 Aligned_cols=200 Identities=26% Similarity=0.412 Sum_probs=174.3
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cchhcc
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~q 495 (645)
+|+++|++++|++ +|+++||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|
T Consensus 1 ml~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (240)
T 2onk_A 1 MFLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQ 77 (240)
T ss_dssp CCEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCS
T ss_pred CEEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcC
Confidence 4789999999975 49999999999 999999999999999999999999999999999998762 346666
Q ss_pred chhhcCCCCCCHHHHHHhhhcc----ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCC
Q 006442 496 NQAEALDLDKTVLETVAEAAED----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571 (645)
Q Consensus 496 ~~~~~l~~~~tv~e~v~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt 571 (645)
+ ..+.+..|+.+|+.+.... ...+++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 78 ~--~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt 154 (240)
T 2onk_A 78 D--YALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIA-HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPL 154 (240)
T ss_dssp S--CCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCT-TTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTT
T ss_pred C--CccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCH-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 4 3466778999999875321 1234578899999994 6789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 572 NHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 572 ~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
++||+.+++.+.+.|+++ +.|||+||||++++..+||++++|++|+++. .|+.+++.+
T Consensus 155 s~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~~ 216 (240)
T 2onk_A 155 SAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVE-KGKLKELFS 216 (240)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHHh
Confidence 999999999999998764 5699999999999999999999999999985 467666643
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=375.76 Aligned_cols=201 Identities=27% Similarity=0.425 Sum_probs=177.7
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cchhcc
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~q 495 (645)
+|+++|++++|+++ +|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++. .+|++|
T Consensus 1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q 79 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEec
Confidence 48999999999888 999999999999999999999999999999999999999999999998762 346666
Q ss_pred chhhcCCCCCCHHHHHHhhhcc---ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCC
Q 006442 496 NQAEALDLDKTVLETVAEAAED---WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572 (645)
Q Consensus 496 ~~~~~l~~~~tv~e~v~~~~~~---~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~ 572 (645)
+ ..+++.+||.+|+.++... ...+++.++|+.+++. +..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 80 ~--~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s 156 (348)
T 3d31_A 80 N--YSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIE-HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLS 156 (348)
T ss_dssp T--CCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCT-TTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSST
T ss_pred C--cccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 4 4577889999999875421 1226788999999994 77899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 573 HLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 573 ~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
+||+.++..+.+.|+++ +.|+|+||||++++..+||||++|++|++.. .|+.+++.
T Consensus 157 ~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~-~g~~~~~~ 216 (348)
T 3d31_A 157 ALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQ-VGKPEEIF 216 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEE-EECHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 99999999999988754 5699999999999999999999999999985 46666654
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=377.06 Aligned_cols=203 Identities=27% Similarity=0.406 Sum_probs=178.3
Q ss_pred EEEEEeeeeeeCCee--ceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc------------
Q 006442 424 VVTIKNLEFGYEDRL--LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------ 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~--~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------ 489 (645)
+|+++|++++|+++. +|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++.
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r 82 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence 589999999998877 999999999999999999999999999999999999999999999997652
Q ss_pred -cchhccchhhcCCCCCCHHHHHHhhhccc--c----HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCC
Q 006442 490 -PNYFEQNQAEALDLDKTVLETVAEAAEDW--R----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS 562 (645)
Q Consensus 490 -~~~~~q~~~~~l~~~~tv~e~v~~~~~~~--~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p 562 (645)
.+|++|+ ..+++.+||.+|+.++.... . .+++.++|+.+++ .+..++++.+|||||||||+|||||+.+|
T Consensus 83 ~ig~v~Q~--~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-~~~~~~~~~~LSGGq~QRvalAraL~~~P 159 (353)
T 1oxx_K 83 KIGMVFQT--WALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDI-HHVLNHFPRELSGAQQQRVALARALVKDP 159 (353)
T ss_dssp CEEEEETT--SCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTC-GGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CEEEEeCC--CccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-chHhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 2355554 45778899999998864321 1 3457889999999 57789999999999999999999999999
Q ss_pred CeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 563 TLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 563 ~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
++|||||||++||+.++..+.+.|++. +.|||+||||++++..+||||++|++|++.. .|+.+++.+
T Consensus 160 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~-~g~~~~l~~ 230 (353)
T 1oxx_K 160 SLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQ-VGKPEDLYD 230 (353)
T ss_dssp SEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHHH
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHHh
Confidence 999999999999999999999988754 5699999999999999999999999999985 466666543
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-43 Score=377.49 Aligned_cols=203 Identities=25% Similarity=0.405 Sum_probs=178.3
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------------
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------------- 489 (645)
+|+++|++++|+++.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++.
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ 82 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCC
Confidence 589999999999888999999999999999999999999999999999999999999999997652
Q ss_pred cchhccchhhcCCCCCCHHHHHHhhhcc--c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCC
Q 006442 490 PNYFEQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (645)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~v~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 563 (645)
.+|++|+ ..+++.+||.+|+.++... . ..+++.++|+.+++ .+..++++.+|||||||||+|||||+.+|+
T Consensus 83 ig~v~Q~--~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-~~~~~r~~~~LSGGq~QRvalArAL~~~P~ 159 (372)
T 1g29_1 83 IAMVFQS--YALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGL-TELLNRKPRELSGGQRQRVALGRAIVRKPQ 159 (372)
T ss_dssp EEEECSC--CCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTC-GGGTTCCGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred EEEEeCC--CccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-chHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 2355554 4577889999999876421 1 12457889999999 577899999999999999999999999999
Q ss_pred eEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 564 LLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 564 lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
+|||||||++||+.++..+.+.|+++ +.|+|+||||++++..+||||++|++|++.. .|+.+++..
T Consensus 160 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~l~~ 229 (372)
T 1g29_1 160 VFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ-VGSPDEVYD 229 (372)
T ss_dssp EEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHHH
T ss_pred EEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEE-eCCHHHHHh
Confidence 99999999999999999999988754 5699999999999999999999999999985 467666543
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-43 Score=377.31 Aligned_cols=203 Identities=29% Similarity=0.440 Sum_probs=175.3
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cchhcc
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~q 495 (645)
+|+++|++++|+++.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++. .+|++|
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 90 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQ 90 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEec
Confidence 499999999999888999999999999999999999999999999999999999999999998762 245665
Q ss_pred chhhcCCCCCCHHHHHHhhhcc--cc----HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeC
Q 006442 496 NQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (645)
Q Consensus 496 ~~~~~l~~~~tv~e~v~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 569 (645)
+ ..+++.+||.+|+.++... .. .+++.++|+.+++ .+..++++.+|||||||||+|||||+.+|++|||||
T Consensus 91 ~--~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE 167 (372)
T 1v43_A 91 S--YAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQI-EELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDE 167 (372)
T ss_dssp --------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTC-GGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEES
T ss_pred C--cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-hhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 4 4577889999999886421 11 2457889999999 578899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 570 PTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 570 Pt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
||++||+.++..+.+.|+++ +.|+|+||||++++..+||||++|++|++.. .|+.+++..
T Consensus 168 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~l~~ 231 (372)
T 1v43_A 168 PLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQ-IGSPTEVYL 231 (372)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHHH
T ss_pred CCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHHh
Confidence 99999999999999988754 5699999999999999999999999999985 466666543
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-43 Score=367.69 Aligned_cols=205 Identities=21% Similarity=0.404 Sum_probs=174.3
Q ss_pred CcEEEEEeeeeeeC-CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------c
Q 006442 422 RSVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------P 490 (645)
Q Consensus 422 ~~~i~~~~v~~~y~-~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~ 490 (645)
...|+++||+|+|+ ++++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 51 ~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i 130 (306)
T 3nh6_A 51 KGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130 (306)
T ss_dssp SCCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTE
T ss_pred CCeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcce
Confidence 34699999999996 578999999999999999999999999999999999999999999999998863 3
Q ss_pred chhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCCh----------hhhccCcCcCCHhHHHHHHHHHHHcc
Q 006442 491 NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA----------DMLDRKVSLLSGGEKARLAFCKFMVK 560 (645)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSgGqkqrv~lAral~~ 560 (645)
+|++|+. .+ +..|+++|+.++......+++...++.+++.. ...++.+.+|||||||||+|||||++
T Consensus 131 ~~v~Q~~--~l-f~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~ 207 (306)
T 3nh6_A 131 GVVPQDT--VL-FNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK 207 (306)
T ss_dssp EEECSSC--CC-CSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred EEEecCC--cc-CcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh
Confidence 4566653 34 46799999998765555566666776666631 12234557899999999999999999
Q ss_pred CCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHH
Q 006442 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSL 631 (645)
Q Consensus 561 ~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~ 631 (645)
+|+||||||||++||+.++..+.+.|.+. +.|||+||||++++.. ||+|++|++|++++ .|+.+++++.
T Consensus 208 ~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~-~G~~~el~~~ 278 (306)
T 3nh6_A 208 APGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCIVE-RGRHEALLSR 278 (306)
T ss_dssp CCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEEEE-EECHHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEEEE-ECCHHHHHhc
Confidence 99999999999999999999999999865 5699999999999987 99999999999986 5787777653
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-44 Score=358.03 Aligned_cols=191 Identities=23% Similarity=0.310 Sum_probs=164.7
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----ceEEEEecc
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQE 169 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-----~~i~~v~Q~ 169 (645)
.++|+++|++++|++ ++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|+|++|+
T Consensus 8 ~~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~ 86 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEE 86 (214)
T ss_dssp -CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSS
T ss_pred CceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCC
Confidence 346999999999988 99999999999999999999999999999999999999999999998754 369999999
Q ss_pred CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCC
Q 006442 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (645)
Q Consensus 170 ~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (645)
+.+++..||+||+..... + ... ... ++++.++++.+|+.
T Consensus 87 ~~~~~~~tv~enl~~~~~---------------~------------------------~~~-~~~-~~~~~~~l~~~gl~ 125 (214)
T 1sgw_A 87 IIVPRKISVEDYLKAVAS---------------L------------------------YGV-KVN-KNEIMDALESVEVL 125 (214)
T ss_dssp CCCCTTSBHHHHHHHHHH---------------H------------------------TTC-CCC-HHHHHHHHHHTTCC
T ss_pred CcCCCCCCHHHHHHHHHH---------------h------------------------cCC-chH-HHHHHHHHHHcCCC
Confidence 988788899999853210 0 000 112 34566788889997
Q ss_pred cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcCeE
Q 006442 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKI 326 (645)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~~d~i 326 (645)
. . ++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|+|||++|||++++..+||++
T Consensus 126 ~-~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v 203 (214)
T 1sgw_A 126 D-L-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENL 203 (214)
T ss_dssp C-T-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEG
T ss_pred c-C-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 4 4 888999999999999999999999999999999999999999999887743 4789999999999999999998
Q ss_pred EEE
Q 006442 327 VET 329 (645)
Q Consensus 327 ~~l 329 (645)
+.+
T Consensus 204 ~~~ 206 (214)
T 1sgw_A 204 HKY 206 (214)
T ss_dssp GGG
T ss_pred EEe
Confidence 854
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-43 Score=361.27 Aligned_cols=205 Identities=28% Similarity=0.354 Sum_probs=177.1
Q ss_pred EEEEEeeeeeeC--C---eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-------cc
Q 006442 424 VVTIKNLEFGYE--D---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------PN 491 (645)
Q Consensus 424 ~i~~~~v~~~y~--~---~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------~~ 491 (645)
+|+++|++++|+ + +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 589999999997 4 67999999999999999999999999999999999999999999999998752 35
Q ss_pred hhccchhhcCCCCCCHHHHHHhhhcc-----ccHHHHHHHHhhcCCCh-hhhccCcCcCCHhHHHHHHHHHHHccCCCeE
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAAED-----WRIDDIKGLLGRCNFKA-DMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~~~-----~~~~~~~~~L~~~~l~~-~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 565 (645)
|++|+.. ...+..|+.+|+...... ...+++.++++.+|+.. +..++++.+|||||||||+|||||+.+|++|
T Consensus 82 ~v~q~~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll 160 (266)
T 2yz2_A 82 IAFQYPE-DQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDIL 160 (266)
T ss_dssp EECSSGG-GGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEeccch-hhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 6666532 234578999999875321 22456888999999942 6779999999999999999999999999999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 566 VLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 566 lLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++. .|+.+++.+
T Consensus 161 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~~ 227 (266)
T 2yz2_A 161 ILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVF-DGTRMEFLE 227 (266)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEE-EEEHHHHHH
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHhc
Confidence 999999999999999999999765 4699999999999999999999999999985 466666554
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-43 Score=360.81 Aligned_cols=210 Identities=22% Similarity=0.367 Sum_probs=167.7
Q ss_pred ccEEEEeEEEEeCC---eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc----------e
Q 006442 96 SGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------K 162 (645)
Q Consensus 96 ~~i~i~nls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~----------~ 162 (645)
.+|+++|++|+|++ .++|++|||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999976 6799999999999999999999999999999999999999999999987432 4
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhh
Q 006442 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (645)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (645)
|+|++|++.++. .||+||+....... ... +.+.... ....+.++
T Consensus 95 i~~v~Q~~~l~~-~tv~enl~~~~~~~-~~~---~~~~~~~-------------------------------~~~~~~~~ 138 (271)
T 2ixe_A 95 VAAVGQEPLLFG-RSFRENIAYGLTRT-PTM---EEITAVA-------------------------------MESGAHDF 138 (271)
T ss_dssp EEEECSSCCCCS-SBHHHHHHTTCSSC-CCH---HHHHHHH-------------------------------HHHTCHHH
T ss_pred EEEEecCCcccc-ccHHHHHhhhcccC-ChH---HHHHHHH-------------------------------HHHhHHHH
Confidence 999999998765 69999996432100 000 0000000 00112234
Q ss_pred chhc--CCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCH
Q 006442 243 MPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR 316 (645)
Q Consensus 243 l~~l--gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~ 316 (645)
+..+ |+. ...++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|++ .|+|||+||||+
T Consensus 139 l~~l~~gl~-~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~ 217 (271)
T 2ixe_A 139 ISGFPQGYD-TEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQL 217 (271)
T ss_dssp HHHSTTGGG-SBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH
T ss_pred HHhhhcchh-hhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH
Confidence 4444 453 456788999999999999999999999999999999999999999999988743 388999999999
Q ss_pred HHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 317 AFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 317 ~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
+++.. ||+|++|++|++. ..|+..+.
T Consensus 218 ~~~~~-~d~v~~l~~G~i~-~~g~~~~l 243 (271)
T 2ixe_A 218 SLAER-AHHILFLKEGSVC-EQGTHLQL 243 (271)
T ss_dssp HHHTT-CSEEEEEETTEEE-EEECHHHH
T ss_pred HHHHh-CCEEEEEECCEEE-EECCHHHH
Confidence 99875 9999999999974 55665544
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-43 Score=365.25 Aligned_cols=212 Identities=22% Similarity=0.363 Sum_probs=166.4
Q ss_pred ccEEEEeEEEEeC-CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc----------eEE
Q 006442 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIA 164 (645)
Q Consensus 96 ~~i~i~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~----------~i~ 164 (645)
..|+++||+|+|+ +.++|+||||+|++|+++|||||||||||||+++|+|+++|++|+|.++|.+. .||
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~ 131 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIG 131 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEE
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceE
Confidence 3599999999995 56799999999999999999999999999999999999999999999987532 599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
||+|++.++ ..||+||+..+.... . .+.+..+++.+ .+...+..+-.
T Consensus 132 ~v~Q~~~lf-~~Tv~eNi~~~~~~~-~----~~~~~~~~~~~---------------------------~l~~~i~~lp~ 178 (306)
T 3nh6_A 132 VVPQDTVLF-NDTIADNIRYGRVTA-G----NDEVEAAAQAA---------------------------GIHDAIMAFPE 178 (306)
T ss_dssp EECSSCCCC-SEEHHHHHHTTSTTC-C----HHHHHHHHHHH---------------------------TCHHHHHHSTT
T ss_pred EEecCCccC-cccHHHHHHhhcccC-C----HHHHHHHHHHh---------------------------CcHHHHHhccc
Confidence 999999875 679999997432110 0 00111111100 01111111111
Q ss_pred hcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhh
Q 006442 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQL 322 (645)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~ 322 (645)
|+. ....+.+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|++ .++|||+||||++.+..
T Consensus 179 --gl~-t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~- 254 (306)
T 3nh6_A 179 --GYR-TQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN- 254 (306)
T ss_dssp --GGG-CEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-
T ss_pred --hhh-hHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-
Confidence 232 234566789999999999999999999999999999999999999999888753 47899999999999987
Q ss_pred cCeEEEEcCceeEEeccChHHHH
Q 006442 323 CTKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 323 ~d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
||+|++|++|++ ...|+..+..
T Consensus 255 aD~i~vl~~G~i-v~~G~~~el~ 276 (306)
T 3nh6_A 255 ADQILVIKDGCI-VERGRHEALL 276 (306)
T ss_dssp CSEEEEEETTEE-EEEECHHHHH
T ss_pred CCEEEEEECCEE-EEECCHHHHH
Confidence 999999999998 4567766554
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-43 Score=358.07 Aligned_cols=208 Identities=23% Similarity=0.392 Sum_probs=162.5
Q ss_pred cEEEEeEEEEe--CCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceEE
Q 006442 97 GVKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIA 164 (645)
Q Consensus 97 ~i~i~nls~~y--~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i~ 164 (645)
.|+++|++|+| +++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|+
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 48999999999 35779999999999999999999999999999999999999999999998743 2499
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
|++|++.++. .||+||+....... . .+++...++ .. . +.+.+.
T Consensus 87 ~v~Q~~~l~~-~tv~enl~~~~~~~-~----~~~~~~~l~--------------~~-------------~----l~~~~~ 129 (247)
T 2ff7_A 87 VVLQDNVLLN-RSIIDNISLANPGM-S----VEKVIYAAK--------------LA-------------G----AHDFIS 129 (247)
T ss_dssp EECSSCCCTT-SBHHHHHTTTCTTC-C----HHHHHHHHH--------------HH-------------T----CHHHHH
T ss_pred EEeCCCcccc-ccHHHHHhccCCCC-C----HHHHHHHHH--------------Hh-------------C----hHHHHH
Confidence 9999998764 69999985321100 0 000000000 00 0 011122
Q ss_pred hc--CCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHH
Q 006442 245 EL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320 (645)
Q Consensus 245 ~l--gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~ 320 (645)
.+ |+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|+|||+||||++.+.
T Consensus 130 ~~~~gl~-~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~ 208 (247)
T 2ff7_A 130 ELREGYN-TIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK 208 (247)
T ss_dssp TSTTGGG-CBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT
T ss_pred hCcchhh-hhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence 21 232 345566899999999999999999999999999999999999999999887753 4899999999999986
Q ss_pred hhcCeEEEEcCceeEEeccChHHH
Q 006442 321 QLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 321 ~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
. ||+|++|++|++. ..|+..+.
T Consensus 209 ~-~d~v~~l~~G~i~-~~g~~~~l 230 (247)
T 2ff7_A 209 N-ADRIIVMEKGKIV-EQGKHKEL 230 (247)
T ss_dssp T-SSEEEEEETTEEE-EEECHHHH
T ss_pred h-CCEEEEEECCEEE-EECCHHHH
Confidence 5 9999999999984 45665543
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-43 Score=357.67 Aligned_cols=199 Identities=25% Similarity=0.386 Sum_probs=176.3
Q ss_pred EEEEEeeeeeeCC----eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-------cc-
Q 006442 424 VVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------PN- 491 (645)
Q Consensus 424 ~i~~~~v~~~y~~----~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------~~- 491 (645)
+|+++|++++|++ +.+|+++||+|+ ||+++|+||||||||||+++|+|++ |++|+|.++|.++. .+
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence 4899999999987 789999999999 9999999999999999999999999 99999999997752 35
Q ss_pred hhccchhhcCCCCCCHHHHHHhhhc--cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeC
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 569 (645)
|++|+. .+ ..|+.+|+..... ....+++.++++.+++..+..++++.+|||||||||+|||||+.+|++|||||
T Consensus 79 ~v~Q~~--~l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE 154 (263)
T 2pjz_A 79 NLPEAY--EI--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDE 154 (263)
T ss_dssp CCGGGS--CT--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred EeCCCC--cc--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 666653 33 7899999987542 23456788999999995267799999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhCC-EEEEEeCCeEEeeCCChhHHH
Q 006442 570 PTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVN-RVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 570 Pt~~LD~~s~~~l~~~l~~~~~tvi~vsHd~~~i~~~~d-~v~~l~~g~i~~~~~~~~~~~ 629 (645)
||++||+.+++.+.+.|+++..|||+||||++++.++|| ++++|++|+++. .|+.+++.
T Consensus 155 Pts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~~-~g~~~~l~ 214 (263)
T 2pjz_A 155 PFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQG-PISVSELL 214 (263)
T ss_dssp TTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEEE-EEEHHHHH
T ss_pred CccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEEE-ecCHHHHH
Confidence 999999999999999999875699999999999999999 999999999985 57777665
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-43 Score=359.47 Aligned_cols=197 Identities=23% Similarity=0.301 Sum_probs=169.2
Q ss_pred cEEEEeEEEEeCC----eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-------ceEE-
Q 006442 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIA- 164 (645)
Q Consensus 97 ~i~i~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-------~~i~- 164 (645)
+|+++|++++|++ +++|+++||+|+ |++++|+||||||||||+++|+|++ |++|+|.++|.+ ..|+
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence 3899999999987 789999999999 9999999999999999999999999 999999998742 2699
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
|++|++.+ ..||+||+..... +. ...++++.++++
T Consensus 79 ~v~Q~~~l--~~tv~enl~~~~~---------------~~----------------------------~~~~~~~~~~l~ 113 (263)
T 2pjz_A 79 NLPEAYEI--GVTVNDIVYLYEE---------------LK----------------------------GLDRDLFLEMLK 113 (263)
T ss_dssp CCGGGSCT--TSBHHHHHHHHHH---------------HT----------------------------CCCHHHHHHHHH
T ss_pred EeCCCCcc--CCcHHHHHHHhhh---------------hc----------------------------chHHHHHHHHHH
Confidence 99999876 8899999853100 00 011234567788
Q ss_pred hcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcC
Q 006442 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCT 324 (645)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d 324 (645)
.+|+..+..++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|++...|||++|||++++..+||
T Consensus 114 ~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d 193 (263)
T 2pjz_A 114 ALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKE 193 (263)
T ss_dssp HTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTT
T ss_pred HcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcC
Confidence 88986356789999999999999999999999999999999999999999999999987643499999999999999999
Q ss_pred -eEEEEcCceeEEeccCh
Q 006442 325 -KIVETEMGVSRTYEGNY 341 (645)
Q Consensus 325 -~i~~l~~G~~~~~~g~~ 341 (645)
+++++++|++. ..|+.
T Consensus 194 ~~i~~l~~G~i~-~~g~~ 210 (263)
T 2pjz_A 194 YKAYFLVGNRLQ-GPISV 210 (263)
T ss_dssp SEEEEEETTEEE-EEEEH
T ss_pred ceEEEEECCEEE-EecCH
Confidence 99999999874 45654
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=354.74 Aligned_cols=197 Identities=25% Similarity=0.475 Sum_probs=172.3
Q ss_pred EEEEEeeeeeeC-CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCC
Q 006442 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502 (645)
Q Consensus 424 ~i~~~~v~~~y~-~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~ 502 (645)
+|+++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+.. ..+|++|+. .+.
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~---~i~~v~q~~--~~~ 78 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQ---SIGFVPQFF--SSP 78 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECS---CEEEECSCC--CCS
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEec---cEEEEcCCC--ccC
Confidence 699999999998 78899999999999999999999999999999999999999999998532 356777753 455
Q ss_pred CCCCHHHHHHhhhcc----------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCC
Q 006442 503 LDKTVLETVAEAAED----------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572 (645)
Q Consensus 503 ~~~tv~e~v~~~~~~----------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~ 572 (645)
+..|+.+|+...... ...+++.++++.+|+ .+..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 79 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts 157 (253)
T 2nq2_C 79 FAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNL-THLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTS 157 (253)
T ss_dssp SCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTC-GGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSST
T ss_pred CCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCC-hHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 678999999875321 112457889999999 467899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHH
Q 006442 573 HLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQV 628 (645)
Q Consensus 573 ~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~ 628 (645)
+||+.++..+.+.|.++ +.|||+||||++++.++||++++|++|+ +. .|+.+++
T Consensus 158 ~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~-~g~~~~~ 215 (253)
T 2nq2_C 158 ALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FK-FGETRNI 215 (253)
T ss_dssp TSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EE-EEEHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-Ee-cCCHHHH
Confidence 99999999999998764 5699999999999999999999999999 54 4666655
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=349.49 Aligned_cols=206 Identities=26% Similarity=0.394 Sum_probs=160.1
Q ss_pred ccEEEEeEEEEeC--CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccC
Q 006442 96 SGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS 173 (645)
Q Consensus 96 ~~i~i~nls~~y~--~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~ 173 (645)
.+|+++|++|+|+ ++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++| +|+|++|+++++
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g---~i~~v~q~~~~~ 81 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---RISFCSQFSWIM 81 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS---CEEEECSSCCCC
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC---EEEEEecCCccc
Confidence 4699999999995 46799999999999999999999999999999999999999999999986 599999999886
Q ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCC-ccc
Q 006442 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT-ADD 252 (645)
Q Consensus 174 ~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~-~~~ 252 (645)
+ .||+||+....... . .+....++. ..+ .+.+..+... ...
T Consensus 82 ~-~tv~enl~~~~~~~-~-----~~~~~~~~~---------------------------~~l----~~~~~~~~~~~~~~ 123 (229)
T 2pze_A 82 P-GTIKENIIFGVSYD-E-----YRYRSVIKA---------------------------CQL----EEDISKFAEKDNIV 123 (229)
T ss_dssp S-BCHHHHHHTTSCCC-H-----HHHHHHHHH---------------------------TTC----HHHHTTSTTGGGSC
T ss_pred C-CCHHHHhhccCCcC-h-----HHHHHHHHH---------------------------hCc----HHHHHhCccccccc
Confidence 6 49999996432100 0 000000000 000 1111221110 012
Q ss_pred ccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH-Hcc--CCCeEEEEecCHHHHHhhcCeEEEE
Q 006442 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY-LGK--QDVPMVIISHDRAFLDQLCTKIVET 329 (645)
Q Consensus 253 ~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~-L~~--~g~tvIivsHd~~~l~~~~d~i~~l 329 (645)
.++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+. +++ .++|||++|||++++. .||+++++
T Consensus 124 ~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l 202 (229)
T 2pze_A 124 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILIL 202 (229)
T ss_dssp BCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEE
T ss_pred ccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEE
Confidence 3445789999999999999999999999999999999999999999986 433 4789999999999986 59999999
Q ss_pred cCceeEEeccChHHH
Q 006442 330 EMGVSRTYEGNYSQY 344 (645)
Q Consensus 330 ~~G~~~~~~g~~~~~ 344 (645)
++|++. ..|+..+.
T Consensus 203 ~~G~i~-~~g~~~~~ 216 (229)
T 2pze_A 203 HEGSSY-FYGTFSEL 216 (229)
T ss_dssp ETTEEE-EEECHHHH
T ss_pred ECCEEE-EECCHHHH
Confidence 999984 55665543
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-43 Score=356.79 Aligned_cols=196 Identities=28% Similarity=0.343 Sum_probs=168.9
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc----------eEEEE
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~----------~i~~v 166 (645)
+|+++|++|+ ++|+|+||+|++|++++|+||||||||||+++|+|+++|+ |+|.++|.+. .|+|+
T Consensus 4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v 78 (249)
T 2qi9_C 4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYL 78 (249)
T ss_dssp EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEE
T ss_pred EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEE
Confidence 5899999987 6999999999999999999999999999999999999999 9999987532 49999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhc
Q 006442 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (645)
Q Consensus 167 ~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (645)
+|++.+++..||+||+...... . .. ++++.++++.+
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~~~------------------------------------------~-~~-~~~~~~~l~~~ 114 (249)
T 2qi9_C 79 SQQQTPPFATPVWHYLTLHQHD------------------------------------------K-TR-TELLNDVAGAL 114 (249)
T ss_dssp CSCCCCCTTCBHHHHHHTTCSS------------------------------------------T-TC-HHHHHHHHHHT
T ss_pred CCCCccCCCCcHHHHHHHhhcc------------------------------------------C-Cc-HHHHHHHHHHc
Confidence 9999887788999998531000 0 01 34456778888
Q ss_pred CCCcccccccCCCCChHHHHHHHHHHHHccCCC-------EEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCH
Q 006442 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPD-------LLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDR 316 (645)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~-------iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~ 316 (645)
|+. +..++++.+|||||||||+|||||+.+|+ +|||||||+|||+.+++.+.++|++ .|+|||++|||+
T Consensus 115 ~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~ 193 (249)
T 2qi9_C 115 ALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDL 193 (249)
T ss_dssp TCG-GGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 885 57788999999999999999999999999 9999999999999999999887743 489999999999
Q ss_pred HHHHhhcCeEEEEcCceeEEeccChHH
Q 006442 317 AFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 317 ~~l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
+++..+||+++++++|++. +.|+..+
T Consensus 194 ~~~~~~~d~v~~l~~G~i~-~~g~~~~ 219 (249)
T 2qi9_C 194 NHTLRHAHRAWLLKGGKML-ASGRREE 219 (249)
T ss_dssp HHHHHHCSEEEEEETTEEE-EEEEHHH
T ss_pred HHHHHhCCEEEEEECCEEE-EeCCHHH
Confidence 9999999999999999874 4565443
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=352.91 Aligned_cols=201 Identities=26% Similarity=0.480 Sum_probs=169.3
Q ss_pred EEEEEeeeeee--CCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------cc
Q 006442 424 VVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PN 491 (645)
Q Consensus 424 ~i~~~~v~~~y--~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~ 491 (645)
-|+++||+++| +++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 38999999999 3578999999999999999999999999999999999999999999999998763 23
Q ss_pred hhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhc-----------cCcCcCCHhHHHHHHHHHHHcc
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLD-----------RKVSLLSGGEKARLAFCKFMVK 560 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~-----------~~~~~LSgGqkqrv~lAral~~ 560 (645)
|++|+ +.++ ..|+.+|+.........+++..+++.+++. +..+ +++.+|||||||||+|||||++
T Consensus 87 ~v~Q~--~~l~-~~tv~enl~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~ 162 (247)
T 2ff7_A 87 VVLQD--NVLL-NRSIIDNISLANPGMSVEKVIYAAKLAGAH-DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 162 (247)
T ss_dssp EECSS--CCCT-TSBHHHHHTTTCTTCCHHHHHHHHHHHTCH-HHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTT
T ss_pred EEeCC--Cccc-cccHHHHHhccCCCCCHHHHHHHHHHhChH-HHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhc
Confidence 45554 2343 469999998754333445667777777773 3333 4568999999999999999999
Q ss_pred CCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 561 ~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
+|++|||||||++||+.++..+.+.|+++ +.|||+||||++.+.. ||++++|++|+++. .|+.+++.+
T Consensus 163 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~-~d~v~~l~~G~i~~-~g~~~~l~~ 232 (247)
T 2ff7_A 163 NPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVE-QGKHKELLS 232 (247)
T ss_dssp CCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTT-SSEEEEEETTEEEE-EECHHHHHT
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 99999999999999999999999999865 5699999999999865 99999999999985 467666543
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-43 Score=355.08 Aligned_cols=200 Identities=25% Similarity=0.341 Sum_probs=168.1
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcC--CCCCeeEEEECceecc-----------c
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--EKPRGGEVLLGEHNVL-----------P 490 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~--~~p~~G~i~~~g~~~~-----------~ 490 (645)
+|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++. .
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i 82 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGL 82 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTB
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcE
Confidence 69999999999988999999999999999999999999999999999999 7899999999998762 1
Q ss_pred chhccchhhcCCCCCCHHHHHHhhhc---c--cc----HHHHHHHHhhcCCChhhhccCcCc-CCHhHHHHHHHHHHHcc
Q 006442 491 NYFEQNQAEALDLDKTVLETVAEAAE---D--WR----IDDIKGLLGRCNFKADMLDRKVSL-LSGGEKARLAFCKFMVK 560 (645)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~v~~~~~---~--~~----~~~~~~~L~~~~l~~~~~~~~~~~-LSgGqkqrv~lAral~~ 560 (645)
+|++|+ +.+++..|+.+|+..... . .. .+.+.++++.+|+..+..++++.+ |||||||||+|||||+.
T Consensus 83 ~~v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~ 160 (250)
T 2d2e_A 83 FLAFQY--PVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVL 160 (250)
T ss_dssp CCCCCC--CC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHH
T ss_pred EEeccC--CccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHc
Confidence 234443 345667899999976431 1 11 245778999999954677899999 99999999999999999
Q ss_pred CCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhh-CCEEEEEeCCeEEeeCCChh
Q 006442 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQI-VNRVVEVKGSNLQDYAGDYN 626 (645)
Q Consensus 561 ~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~-~d~v~~l~~g~i~~~~~~~~ 626 (645)
+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+ |||+++|++|+++. .|+.+
T Consensus 161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~-~g~~~ 229 (250)
T 2d2e_A 161 EPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVA-TGGPE 229 (250)
T ss_dssp CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEE-EESHH
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEE-EeCHH
Confidence 99999999999999999999999999875 35999999999999988 59999999999985 45555
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=357.44 Aligned_cols=206 Identities=26% Similarity=0.357 Sum_probs=173.2
Q ss_pred CcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcC--CCCCeeEEEECceecc----------
Q 006442 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--EKPRGGEVLLGEHNVL---------- 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~--~~p~~G~i~~~g~~~~---------- 489 (645)
.++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++.
T Consensus 18 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp --CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred CceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 4579999999999988999999999999999999999999999999999999 4689999999998752
Q ss_pred -cchhccchhhcCCCCCCHHHHHHhhhc------c---cc----HHHHHHHHhhcCCChhhhccCcC-cCCHhHHHHHHH
Q 006442 490 -PNYFEQNQAEALDLDKTVLETVAEAAE------D---WR----IDDIKGLLGRCNFKADMLDRKVS-LLSGGEKARLAF 554 (645)
Q Consensus 490 -~~~~~q~~~~~l~~~~tv~e~v~~~~~------~---~~----~~~~~~~L~~~~l~~~~~~~~~~-~LSgGqkqrv~l 554 (645)
.+|++|+ ..+.+..|+.+|+..... . .. .+.+.++|+.+|+..+..++++. +|||||||||+|
T Consensus 98 ~i~~v~Q~--~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~i 175 (267)
T 2zu0_C 98 GIFMAFQY--PVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDI 175 (267)
T ss_dssp TEEEECSS--CCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHH
T ss_pred CEEEEccC--ccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHH
Confidence 1234443 345677899999865321 0 11 23577899999996456788887 599999999999
Q ss_pred HHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhh-CCEEEEEeCCeEEeeCCChhHHHH
Q 006442 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQI-VNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~-~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
||||+.+|+||||||||++||+.+++.+.+.|+++ +.|||+||||++++..+ |||+++|++|+++. .|+.++...
T Consensus 176 AraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~~ 254 (267)
T 2zu0_C 176 LQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK-SGDFTLVKQ 254 (267)
T ss_dssp HHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEE-EECTTHHHH
T ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEE-EcCHHHHhh
Confidence 99999999999999999999999999999999876 35999999999999886 89999999999985 466666543
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-43 Score=352.22 Aligned_cols=202 Identities=19% Similarity=0.344 Sum_probs=161.3
Q ss_pred cEEEEeEEEEeC--CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCC
Q 006442 97 GVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (645)
Q Consensus 97 ~i~i~nls~~y~--~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~ 174 (645)
+|+++|++|+|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .|+|++|++.+ +
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g---~i~~v~Q~~~~-~ 78 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---SVAYVPQQAWI-Q 78 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS---CEEEECSSCCC-C
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC---EEEEEcCCCcC-C
Confidence 599999999997 46799999999999999999999999999999999999999999999986 59999999875 6
Q ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCc----
Q 006442 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA---- 250 (645)
Q Consensus 175 ~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~---- 250 (645)
..||+||+........ ...+.+ . ...++++.++..+
T Consensus 79 ~~tv~enl~~~~~~~~---~~~~~~---~----------------------------------~~~~l~~~~~~~~~~~~ 118 (237)
T 2cbz_A 79 NDSLRENILFGCQLEE---PYYRSV---I----------------------------------QACALLPDLEILPSGDR 118 (237)
T ss_dssp SEEHHHHHHTTSCCCT---THHHHH---H----------------------------------HHTTCHHHHTTSTTGGG
T ss_pred CcCHHHHhhCccccCH---HHHHHH---H----------------------------------HHHhhHHHHHhcccccc
Confidence 7899999863211000 000000 0 0001111222211
Q ss_pred ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc-----cCCCeEEEEecCHHHHHhhcCe
Q 006442 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG-----KQDVPMVIISHDRAFLDQLCTK 325 (645)
Q Consensus 251 ~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~-----~~g~tvIivsHd~~~l~~~~d~ 325 (645)
...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|. ..|+|||+||||++++. .||+
T Consensus 119 ~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~ 197 (237)
T 2cbz_A 119 TEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDV 197 (237)
T ss_dssp SEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSE
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCE
Confidence 12467789999999999999999999999999999999999999999999883 24889999999999985 6999
Q ss_pred EEEEcCceeEEeccChHHH
Q 006442 326 IVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 326 i~~l~~G~~~~~~g~~~~~ 344 (645)
++++++|++. ..|+..+.
T Consensus 198 v~~l~~G~i~-~~g~~~~~ 215 (237)
T 2cbz_A 198 IIVMSGGKIS-EMGSYQEL 215 (237)
T ss_dssp EEEEETTEEE-EEECHHHH
T ss_pred EEEEeCCEEE-EeCCHHHH
Confidence 9999999984 55766554
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-42 Score=355.59 Aligned_cols=203 Identities=22% Similarity=0.402 Sum_probs=169.7
Q ss_pred CcEEEEEeeeeeeCC---eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---------
Q 006442 422 RSVVTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~---~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------- 489 (645)
..+|+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 347999999999986 68999999999999999999999999999999999999999999999998763
Q ss_pred -cchhccchhhcCCCCCCHHHHHHhhhccccH-H---------HHHHHHhhc--CCChhhhccCcCcCCHhHHHHHHHHH
Q 006442 490 -PNYFEQNQAEALDLDKTVLETVAEAAEDWRI-D---------DIKGLLGRC--NFKADMLDRKVSLLSGGEKARLAFCK 556 (645)
Q Consensus 490 -~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~-~---------~~~~~L~~~--~l~~~~~~~~~~~LSgGqkqrv~lAr 556 (645)
.+|++|+. .++ ..|+.+|+.+....... . .+.++++.+ |+ ....++++.+|||||||||+|||
T Consensus 94 ~i~~v~Q~~--~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl-~~~~~~~~~~LSgGq~QRv~lAr 169 (271)
T 2ixe_A 94 QVAAVGQEP--LLF-GRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGY-DTEVGETGNQLSGGQRQAVALAR 169 (271)
T ss_dssp HEEEECSSC--CCC-SSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGG-GSBCCGGGTTSCHHHHHHHHHHH
T ss_pred cEEEEecCC--ccc-cccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcch-hhhhcCCcCCCCHHHHHHHHHHH
Confidence 23555543 343 46999999875322111 1 123456666 55 34567889999999999999999
Q ss_pred HHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 557 al~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
||+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++.. ||+|++|++|+++. .|+.+++.+
T Consensus 170 aL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~-~g~~~~l~~ 245 (271)
T 2ixe_A 170 ALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCE-QGTHLQLME 245 (271)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEE-EECHHHHHH
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 999999999999999999999999999999875 3599999999999875 99999999999985 477776654
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-43 Score=355.42 Aligned_cols=201 Identities=20% Similarity=0.347 Sum_probs=161.0
Q ss_pred cEEEEeEEEEe-CCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceEEE
Q 006442 97 GVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (645)
Q Consensus 97 ~i~i~nls~~y-~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i~~ 165 (645)
+|+++|++|+| ++.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|+|
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 38999999999 56789999999999999999999999999999999999999999999998732 25999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchh
Q 006442 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (645)
Q Consensus 166 v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (645)
++|++.++. .||+||+........ . ++++.++++.
T Consensus 81 v~q~~~l~~-~tv~enl~~~~~~~~------------------~--------------------------~~~~~~~l~~ 115 (243)
T 1mv5_A 81 VSQDSAIMA-GTIRENLTYGLEGDY------------------T--------------------------DEDLWQVLDL 115 (243)
T ss_dssp ECCSSCCCC-EEHHHHTTSCTTSCS------------------C--------------------------HHHHHHHHHH
T ss_pred EcCCCcccc-ccHHHHHhhhccCCC------------------C--------------------------HHHHHHHHHH
Confidence 999998755 599999853210000 0 0111122222
Q ss_pred cCCCc----------ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 006442 246 LGFTA----------DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (645)
Q Consensus 246 lgl~~----------~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivs 313 (645)
+++.. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|++ .|+|||+||
T Consensus 116 ~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vt 195 (243)
T 1mv5_A 116 AFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIA 195 (243)
T ss_dssp HTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEEC
T ss_pred hChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 22211 233456789999999999999999999999999999999999998888877643 489999999
Q ss_pred cCHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
||++++. .||+|+++++|++ ...|+..+.
T Consensus 196 H~~~~~~-~~d~v~~l~~G~i-~~~g~~~~~ 224 (243)
T 1mv5_A 196 HRLSTIV-DADKIYFIEKGQI-TGSGKHNEL 224 (243)
T ss_dssp CSHHHHH-HCSEEEEEETTEE-CCCSCHHHH
T ss_pred CChHHHH-hCCEEEEEECCEE-EEeCCHHHH
Confidence 9999886 5999999999997 356765544
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-42 Score=351.04 Aligned_cols=201 Identities=20% Similarity=0.416 Sum_probs=170.0
Q ss_pred EEEEEeeeeee-CCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------cch
Q 006442 424 VVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNY 492 (645)
Q Consensus 424 ~i~~~~v~~~y-~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~ 492 (645)
+|+++|++++| +++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 48999999999 5678999999999999999999999999999999999999999999999998752 235
Q ss_pred hccchhhcCCCCCCHHHHHHhh-hccccHHHHHHHHhhcCCChhhhc-----------cCcCcCCHhHHHHHHHHHHHcc
Q 006442 493 FEQNQAEALDLDKTVLETVAEA-AEDWRIDDIKGLLGRCNFKADMLD-----------RKVSLLSGGEKARLAFCKFMVK 560 (645)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~v~~~-~~~~~~~~~~~~L~~~~l~~~~~~-----------~~~~~LSgGqkqrv~lAral~~ 560 (645)
++|+. .++ ..|+.+|+... ......+++..+++.+++. +..+ +++.+|||||||||+|||||++
T Consensus 81 v~q~~--~l~-~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~ 156 (243)
T 1mv5_A 81 VSQDS--AIM-AGTIRENLTYGLEGDYTDEDLWQVLDLAFAR-SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR 156 (243)
T ss_dssp ECCSS--CCC-CEEHHHHTTSCTTSCSCHHHHHHHHHHHTCT-TTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred EcCCC--ccc-cccHHHHHhhhccCCCCHHHHHHHHHHhChH-HHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhc
Confidence 55543 343 46999999875 2233445677788888874 3333 4567999999999999999999
Q ss_pred CCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 561 ~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
+|++|||||||++||+.+++.+.+.|+++ +.|||+||||++++. .|||+++|++|+++. .|+.+++.+
T Consensus 157 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~-~g~~~~~~~ 226 (243)
T 1mv5_A 157 NPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQITG-SGKHNELVA 226 (243)
T ss_dssp CCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEECC-CSCHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEECCEEEE-eCCHHHHHh
Confidence 99999999999999999999999998865 569999999999986 599999999999974 578777654
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-42 Score=347.52 Aligned_cols=197 Identities=25% Similarity=0.408 Sum_probs=172.1
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------cchh
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYF 493 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~~ 493 (645)
+|+++|++++ .+|+++||+|++||+++|+||||||||||+++|+|+++|+ |+|.++|.++. .+|+
T Consensus 4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v 78 (249)
T 2qi9_C 4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYL 78 (249)
T ss_dssp EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEE
T ss_pred EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEE
Confidence 6999999987 6899999999999999999999999999999999999999 99999998762 2455
Q ss_pred ccchhhcCCCCCCHHHHHHhhhc-cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCC-------eE
Q 006442 494 EQNQAEALDLDKTVLETVAEAAE-DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST-------LL 565 (645)
Q Consensus 494 ~q~~~~~l~~~~tv~e~v~~~~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~-------lL 565 (645)
+|+. .+++..|+.||+..... ....+.+.++++.+++ .+..++++.+|||||||||+|||||+.+|+ +|
T Consensus 79 ~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~ll 155 (249)
T 2qi9_C 79 SQQQ--TPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL-DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLL 155 (249)
T ss_dssp CSCC--CCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTC-GGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEE
T ss_pred CCCC--ccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCC-hhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEE
Confidence 5543 45567899999987531 1125668889999999 467899999999999999999999999999 99
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 566 VLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 566 lLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 156 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 221 (249)
T 2qi9_C 156 LLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLA-SGRREEVL 221 (249)
T ss_dssp EESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EEEHHHHS
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 999999999999999999999765 4699999999999999999999999999985 46666553
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-42 Score=349.89 Aligned_cols=210 Identities=20% Similarity=0.309 Sum_probs=159.6
Q ss_pred cEEEEeEEEEeCC---eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceE
Q 006442 97 GVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (645)
Q Consensus 97 ~i~i~nls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i 163 (645)
+|+++|++|+|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++| +|+|.++|.+ ..|
T Consensus 17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i 95 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSII 95 (260)
T ss_dssp CEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTE
T ss_pred eEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccE
Confidence 5999999999976 3699999999999999999999999999999999999987 8999998743 259
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhc
Q 006442 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (645)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (645)
+|++|++.++ ..||+||+....... . .+.+.+.++. . .+...+..+-
T Consensus 96 ~~v~Q~~~l~-~~tv~enl~~~~~~~-~----~~~~~~~l~~------------------------~---~l~~~~~~l~ 142 (260)
T 2ghi_A 96 GIVPQDTILF-NETIKYNILYGKLDA-T----DEEVIKATKS------------------------A---QLYDFIEALP 142 (260)
T ss_dssp EEECSSCCCC-SEEHHHHHHTTCTTC-C----HHHHHHHHHH------------------------T---TCHHHHHTST
T ss_pred EEEcCCCccc-ccCHHHHHhccCCCC-C----HHHHHHHHHH------------------------h---CCHHHHHhcc
Confidence 9999999876 469999986421100 0 0000000000 0 0000010000
Q ss_pred hhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 006442 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~ 321 (645)
. ++. ...++.+.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|++ .++|||+||||++++.
T Consensus 143 ~--~~~-~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~- 218 (260)
T 2ghi_A 143 K--KWD-TIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS- 218 (260)
T ss_dssp T--GGG-CEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-
T ss_pred c--ccc-ccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-
Confidence 0 000 123466899999999999999999999999999999999999999999887743 4789999999999986
Q ss_pred hcCeEEEEcCceeEEeccChHHHH
Q 006442 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 322 ~~d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
.||+|++|++|++. ..|+..+..
T Consensus 219 ~~d~i~~l~~G~i~-~~g~~~~l~ 241 (260)
T 2ghi_A 219 SAESIILLNKGKIV-EKGTHKDLL 241 (260)
T ss_dssp TCSEEEEEETTEEE-EEECHHHHH
T ss_pred hCCEEEEEECCEEE-EECCHHHHH
Confidence 59999999999984 557665543
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-42 Score=343.52 Aligned_cols=191 Identities=26% Similarity=0.398 Sum_probs=165.0
Q ss_pred CcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----cchhccc
Q 006442 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----PNYFEQN 496 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----~~~~~q~ 496 (645)
..+|+++|++++|++ .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|+
T Consensus 8 ~~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~ 86 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEE 86 (214)
T ss_dssp -CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSS
T ss_pred CceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCC
Confidence 357999999999988 9999999999999999999999999999999999999999999999998752 3456654
Q ss_pred hhhcCCCCCCHHHHHHhhhc----cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCC
Q 006442 497 QAEALDLDKTVLETVAEAAE----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572 (645)
Q Consensus 497 ~~~~l~~~~tv~e~v~~~~~----~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~ 572 (645)
. .+++..|+.+|+..... ....+++.++++.+++. +. ++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 87 ~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~-~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts 162 (214)
T 1sgw_A 87 I--IVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL-DL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVV 162 (214)
T ss_dssp C--CCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC-CT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTT
T ss_pred C--cCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCC-cC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCc
Confidence 3 45667899999987532 12345688899999995 55 89999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeE
Q 006442 573 HLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNL 618 (645)
Q Consensus 573 ~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i 618 (645)
+||+.++..+.+.|+++ +.|||+||||++++..+||+++.+ .|+|
T Consensus 163 ~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 163 AIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp TSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 99999999999999865 359999999999999999998755 3444
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-41 Score=337.71 Aligned_cols=199 Identities=23% Similarity=0.378 Sum_probs=162.6
Q ss_pred cEEEEEeeeeeeC--CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhc
Q 006442 423 SVVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEA 500 (645)
Q Consensus 423 ~~i~~~~v~~~y~--~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~ 500 (645)
.+|+++|++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| ..+|++|+. .
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g---~i~~v~q~~--~ 79 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---RISFCSQFS--W 79 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS---CEEEECSSC--C
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC---EEEEEecCC--c
Confidence 4699999999995 47899999999999999999999999999999999999999999999998 357777764 3
Q ss_pred CCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChh----------hhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCC
Q 006442 501 LDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD----------MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (645)
Q Consensus 501 l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP 570 (645)
+++ .|+.+|+..... .........++.+++... ..++++.+|||||||||+|||||+.+|++||||||
T Consensus 80 ~~~-~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEP 157 (229)
T 2pze_A 80 IMP-GTIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 157 (229)
T ss_dssp CCS-BCHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred ccC-CCHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 434 599999987532 122223344444444211 12334689999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHH-Hhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 571 TNHLDIPSKEMLEEAI-SEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 571 t~~LD~~s~~~l~~~l-~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|++||+.++..+.+.+ .+. +.|||+||||++++. .||++++|++|+++. .|+.+++.+
T Consensus 158 ts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~-~g~~~~~~~ 218 (229)
T 2pze_A 158 FGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYF-YGTFSELQN 218 (229)
T ss_dssp TTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEETTEEEE-EECHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEECCEEEE-ECCHHHHHh
Confidence 9999999999999974 443 469999999999986 499999999999985 477776543
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-41 Score=345.62 Aligned_cols=202 Identities=20% Similarity=0.363 Sum_probs=168.1
Q ss_pred cEEEEEeeeeeeCC---eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------
Q 006442 423 SVVTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (645)
Q Consensus 423 ~~i~~~~v~~~y~~---~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (645)
.+|+++||+++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++| +|+|.++|.++.
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 35999999999975 4699999999999999999999999999999999999987 899999998762
Q ss_pred cchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhh----------hccCcCcCCHhHHHHHHHHHHHc
Q 006442 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM----------LDRKVSLLSGGEKARLAFCKFMV 559 (645)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~----------~~~~~~~LSgGqkqrv~lAral~ 559 (645)
.+|++|+. .++ ..|+.+|+..+......+++.+.++.+++.... .++++.+|||||||||+|||||+
T Consensus 95 i~~v~Q~~--~l~-~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~ 171 (260)
T 2ghi_A 95 IGIVPQDT--ILF-NETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL 171 (260)
T ss_dssp EEEECSSC--CCC-SEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH
T ss_pred EEEEcCCC--ccc-ccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHH
Confidence 23555543 343 469999998754323345566777777763211 23567899999999999999999
Q ss_pred cCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 560 ~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
.+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++. .||++++|++|+++. .|+.+++.+
T Consensus 172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~~ 242 (260)
T 2ghi_A 172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNKGKIVE-KGTHKDLLK 242 (260)
T ss_dssp HCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEEEEETTEEEE-EECHHHHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEECCEEEE-ECCHHHHHh
Confidence 999999999999999999999999999865 459999999999986 499999999999985 477776654
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=366.08 Aligned_cols=199 Identities=21% Similarity=0.354 Sum_probs=165.9
Q ss_pred ccEEEEeEEEEe--CCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceE
Q 006442 96 SGVKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (645)
Q Consensus 96 ~~i~i~nls~~y--~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i 163 (645)
..|+++|++|+| ++.++|+||||+|++||+++|+|||||||||||++|+|+++ ++|+|.++|.+ ..|
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~i 96 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAF 96 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTE
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCE
Confidence 359999999999 56789999999999999999999999999999999999998 89999998853 259
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhc
Q 006442 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (645)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (645)
+||+|++.+++ .||+||+..... ...+++.+++
T Consensus 97 g~v~Q~~~lf~-~tv~enl~~~~~----------------------------------------------~~~~~v~~~l 129 (390)
T 3gd7_A 97 GVIPQKVFIFS-GTFRKNLDPNAA----------------------------------------------HSDQEIWKVA 129 (390)
T ss_dssp EEESCCCCCCS-EEHHHHHCTTCC----------------------------------------------SCHHHHHHHH
T ss_pred EEEcCCcccCc-cCHHHHhhhccc----------------------------------------------cCHHHHHHHH
Confidence 99999998765 699999841100 0012334455
Q ss_pred hhcCCCcccccccCCC-----------CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEE
Q 006442 244 PELGFTADDGDRLVAS-----------FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMV 310 (645)
Q Consensus 244 ~~lgl~~~~~~~~~~~-----------LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvI 310 (645)
+.+++. +..++.+.+ |||||||||+|||||+.+|+||||||||++||+..+..+.+.|++ .++|+|
T Consensus 130 ~~~~L~-~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi 208 (390)
T 3gd7_A 130 DEVGLR-SVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVI 208 (390)
T ss_dssp HHTTCH-HHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEE
T ss_pred HHhCCH-HHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 566664 456666666 999999999999999999999999999999999999999998864 478999
Q ss_pred EEecCHHHHHhhcCeEEEEcCceeEEeccChHHHH
Q 006442 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 311 ivsHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
+||||++.+. .||+|++|++|++. ..|+..+.+
T Consensus 209 ~vtHd~e~~~-~aDri~vl~~G~i~-~~g~~~el~ 241 (390)
T 3gd7_A 209 LCEARIEAML-ECDQFLVIEENKVR-QYDSILELY 241 (390)
T ss_dssp EECSSSGGGT-TCSEEEEEETTEEE-EESSHHHHH
T ss_pred EEEcCHHHHH-hCCEEEEEECCEEE-EECCHHHHH
Confidence 9999998665 59999999999984 557765544
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-44 Score=402.23 Aligned_cols=381 Identities=11% Similarity=0.080 Sum_probs=241.1
Q ss_pred cEEEEeEEEEeCCeeeeeeeeE-EEECCcEEEEECCCCccHHHHHHH--HHcCCCCCccEEEEcCCCc---------eEE
Q 006442 97 GVKLENISKSYKGVTVLKDVTW-EVKKGEKVGLVGVNGAGKTTQLRI--IAGQEEPDSGNVIKAKSNM---------KIA 164 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl-~i~~Ge~~~lvG~NGsGKSTLl~~--l~G~~~p~~G~I~~~~~~~---------~i~ 164 (645)
+++.+++.+..++.++|++++| .|++|++++|+||||||||||+++ ++|+++|++|.|++++... .+|
T Consensus 12 ~~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g 91 (525)
T 1tf7_A 12 NSEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFG 91 (525)
T ss_dssp --CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGT
T ss_pred CccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcC
Confidence 3455556555567889999999 999999999999999999999999 7899999999999875431 123
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
|++|++.... |+. .+.... .....+++.
T Consensus 92 ~~~q~~~~~~------~l~---------------------------------------------~~~~~~-~~~~~~~l~ 119 (525)
T 1tf7_A 92 WDLAKLVDEG------KLF---------------------------------------------ILDASP-DPEGQEVVG 119 (525)
T ss_dssp CCHHHHHHTT------SEE---------------------------------------------EEECCC-CSSCCSCCS
T ss_pred CChHHhhccC------cEE---------------------------------------------EEecCc-ccchhhhhc
Confidence 3333221100 000 000000 000011222
Q ss_pred hcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC-----CCHHHHHHHHHHH---ccCCCeEEEEecCH
Q 006442 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNH-----LDLDTIEWLEGYL---GKQDVPMVIISHDR 316 (645)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~-----LD~~~~~~l~~~L---~~~g~tvIivsHd~ 316 (645)
.+++. +..++.+..|||| +|++++|||||+. ||+..++.+.+++ ++.|+|||++||++
T Consensus 120 ~~~l~-~~~~~~~~~LS~g-------------~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~ 185 (525)
T 1tf7_A 120 GFDLS-ALIERINYAIQKY-------------RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERI 185 (525)
T ss_dssp SHHHH-HHHHHHHHHHHHH-------------TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECS
T ss_pred ccCHH-HHHHHHHHHHHHc-------------CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 23322 2333444555555 5889999999984 6888888887765 44699999999999
Q ss_pred HHH---------HhhcCeEEEEcCceeEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHH
Q 006442 317 AFL---------DQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASS 387 (645)
Q Consensus 317 ~~l---------~~~~d~i~~l~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 387 (645)
+++ ..+||+|++|++|.. .|....++.. ..++. ...
T Consensus 186 ~~~~~~~~~~i~~~laD~vi~L~~~~~---~G~~~r~l~~--------------------------~k~r~-~~~----- 230 (525)
T 1tf7_A 186 EEYGPIARYGVEEFVSDNVVILRNVLE---GERRRRTLEI--------------------------LKLRG-TSH----- 230 (525)
T ss_dssp SSSSCSSTTSCHHHHCSEEEEEEEECS---TTCCEEEEEE--------------------------EEETT-SCC-----
T ss_pred CCccccccccceeeeeeEEEEEEEEcc---CCceeEEEEE--------------------------EECCC-CCC-----
Confidence 984 566999999988432 1110000000 00000 000
Q ss_pred HHHHHHHHHHhhhhcccc--cccceEEeccCCCCCCCcEEEEEeeeeeeCC-eeceeeeeEEEecCcEEEEEcCCCCcHH
Q 006442 388 AEKKLERLQEEEQIEKPF--QRKQMKIRFPERGRSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKS 464 (645)
Q Consensus 388 ~~~~l~rl~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~-~~~l~~vsl~i~~Ge~v~i~G~NGsGKS 464 (645)
.....+. ...... .+|.......+.+++++++..|++ ..+|.+ .|++|++++|+|+||||||
T Consensus 231 -----------~~~~~~~~i~~~gi~-v~p~~~~~~~~~~~~~~l~~g~~~ld~vL~g---~i~~G~i~~i~G~~GsGKS 295 (525)
T 1tf7_A 231 -----------MKGEYPFTITDHGIN-IFPLGAMRLTQRSSNVRVSSGVVRLDEMCGG---GFFKDSIILATGATGTGKT 295 (525)
T ss_dssp -----------CCSEEEEEEETTEEE-ECCTTTCCSCCCCCCCEECCSCHHHHHHTTS---SEESSCEEEEEECTTSSHH
T ss_pred -----------CCceEEEEEcCCCEE-EEeccccccccccccceeecChHHHHHHhCC---CCCCCcEEEEEeCCCCCHH
Confidence 0000000 000011 112111122345677888877754 234444 8999999999999999999
Q ss_pred HHHHHHHcCCCCCeeE--EEECceecccchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcC
Q 006442 465 TLLKLIMGLEKPRGGE--VLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVS 542 (645)
Q Consensus 465 TLl~~l~g~~~p~~G~--i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~ 542 (645)
||++.++|..+|. |. +.+.+.+. +. ++..+.... .+...+ +...|+ ....+.++.
T Consensus 296 TLl~~l~g~~~~~-G~~vi~~~~ee~-~~--------------~l~~~~~~~--g~~~~~----~~~~g~-~~~~~~~p~ 352 (525)
T 1tf7_A 296 LLVSRFVENACAN-KERAILFAYEES-RA--------------QLLRNAYSW--GMDFEE----MERQNL-LKIVCAYPE 352 (525)
T ss_dssp HHHHHHHHHHHTT-TCCEEEEESSSC-HH--------------HHHHHHHTT--SCCHHH----HHHTTS-EEECCCCGG
T ss_pred HHHHHHHHHHHhC-CCCEEEEEEeCC-HH--------------HHHHHHHHc--CCCHHH----HHhCCC-EEEEEeccc
Confidence 9999999998875 43 33332211 00 111111100 111111 223343 244577888
Q ss_pred cCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHH-----HHHHHHHHHH---hcCceEEEEecCH----------HHHH
Q 006442 543 LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP-----SKEMLEEAIS---EYKGTVITVSHDR----------YFVK 604 (645)
Q Consensus 543 ~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~-----s~~~l~~~l~---~~~~tvi~vsHd~----------~~i~ 604 (645)
+|||||+||+++|+++..+|++||+| ||++||.. .++.+.++++ +.+.|||+||||. ..+.
T Consensus 353 ~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~ 431 (525)
T 1tf7_A 353 SAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHIS 431 (525)
T ss_dssp GSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCT
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccc
Confidence 99999999999999999999999999 99999999 8888777665 4467999999999 7888
Q ss_pred hhCCEEEEEeCCe
Q 006442 605 QIVNRVVEVKGSN 617 (645)
Q Consensus 605 ~~~d~v~~l~~g~ 617 (645)
.+||+|++|++|+
T Consensus 432 ~~~D~vi~L~~ge 444 (525)
T 1tf7_A 432 TITDTIILLQYVE 444 (525)
T ss_dssp TTCSEEEEEEEEE
T ss_pred eeeeEEEEEEEEE
Confidence 8999999998776
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-41 Score=341.34 Aligned_cols=198 Identities=21% Similarity=0.385 Sum_probs=163.4
Q ss_pred EEEEEeeeeeeC--CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcC
Q 006442 424 VVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEAL 501 (645)
Q Consensus 424 ~i~~~~v~~~y~--~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l 501 (645)
+|+++|++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| ..+|++|+. .+
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g---~i~~v~Q~~--~~ 77 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---SVAYVPQQA--WI 77 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS---CEEEECSSC--CC
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC---EEEEEcCCC--cC
Confidence 489999999997 47899999999999999999999999999999999999999999999998 367887764 23
Q ss_pred CCCCCHHHHHHhhhccccHHHHHHHHhhcCCC------h----hhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCC
Q 006442 502 DLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK------A----DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571 (645)
Q Consensus 502 ~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~------~----~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt 571 (645)
+..|+.+|+....... .......++.+++. . ...++++.+|||||||||+|||||+.+|++|||||||
T Consensus 78 -~~~tv~enl~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt 155 (237)
T 2cbz_A 78 -QNDSLRENILFGCQLE-EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL 155 (237)
T ss_dssp -CSEEHHHHHHTTSCCC-TTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred -CCcCHHHHhhCccccC-HHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 5789999998754211 11222333333321 1 1246788999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHH---hc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 572 NHLDIPSKEMLEEAIS---EY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 572 ~~LD~~s~~~l~~~l~---~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
++||+.++..+.+.|. +. +.|||+||||++++. .||++++|++|+++. .|+.+++.+
T Consensus 156 s~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~~-~g~~~~~~~ 217 (237)
T 2cbz_A 156 SAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKISE-MGSYQELLA 217 (237)
T ss_dssp TTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEEEE-EECHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEEEE-eCCHHHHhh
Confidence 9999999999999984 32 469999999999985 699999999999985 477777654
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=358.26 Aligned_cols=205 Identities=18% Similarity=0.287 Sum_probs=175.0
Q ss_pred CCCCCcEEEEEeeeeee--CCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc------
Q 006442 418 GRSGRSVVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------ 489 (645)
Q Consensus 418 ~~~~~~~i~~~~v~~~y--~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------ 489 (645)
.|+....|+++||+++| +++.+|+++||+|++||+++|+|||||||||||++|+|+++ ++|+|.++|.++.
T Consensus 13 ~~~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~ 91 (390)
T 3gd7_A 13 IWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQ 91 (390)
T ss_dssp CSSSSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHH
T ss_pred CCCCCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHH
Confidence 34555679999999999 56789999999999999999999999999999999999998 9999999998763
Q ss_pred ----cchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCc-----------CCHhHHHHHHH
Q 006442 490 ----PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSL-----------LSGGEKARLAF 554 (645)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~-----------LSgGqkqrv~l 554 (645)
.+|++|+. .++ ..|+.+|+.... ....+++.++++.+++ .+..++.+.+ |||||||||+|
T Consensus 92 ~rr~ig~v~Q~~--~lf-~~tv~enl~~~~-~~~~~~v~~~l~~~~L-~~~~~~~p~~l~~~i~~~g~~LSGGqrQRval 166 (390)
T 3gd7_A 92 WRKAFGVIPQKV--FIF-SGTFRKNLDPNA-AHSDQEIWKVADEVGL-RSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCL 166 (390)
T ss_dssp HHHTEEEESCCC--CCC-SEEHHHHHCTTC-CSCHHHHHHHHHHTTC-HHHHTTSTTGGGCEECTTTTTSCHHHHHHHHH
T ss_pred HhCCEEEEcCCc--ccC-ccCHHHHhhhcc-ccCHHHHHHHHHHhCC-HHHHhhcccccccccccccccCCHHHHHHHHH
Confidence 23555543 343 479999996432 2345678889999999 5778899888 99999999999
Q ss_pred HHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
||||+.+|+||||||||++||+.++..+.+.|++. +.|+|+||||++.+. .||||++|++|+|... |..+++..
T Consensus 167 ARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~-~aDri~vl~~G~i~~~-g~~~el~~ 242 (390)
T 3gd7_A 167 ARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAML-ECDQFLVIEENKVRQY-DSILELYH 242 (390)
T ss_dssp HHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGT-TCSEEEEEETTEEEEE-SSHHHHHH
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHH-hCCEEEEEECCEEEEE-CCHHHHHh
Confidence 99999999999999999999999999999999875 459999999987665 5999999999999864 66666543
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-40 Score=340.34 Aligned_cols=203 Identities=25% Similarity=0.370 Sum_probs=145.9
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCCC
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~ 175 (645)
+.|+++|++|.+ .++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++| +|+|++|++.+++
T Consensus 39 ~~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g---~i~~v~Q~~~l~~- 112 (290)
T 2bbs_A 39 DSLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---RISFCSQNSWIMP- 112 (290)
T ss_dssp -----------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS---CEEEECSSCCCCS-
T ss_pred ceEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC---EEEEEeCCCccCc-
Confidence 359999999863 5799999999999999999999999999999999999999999999976 5999999998765
Q ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCC-ccccc
Q 006442 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT-ADDGD 254 (645)
Q Consensus 176 ~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~-~~~~~ 254 (645)
.||+||+. .+.... ......++. . .+. +.+..+... ....+
T Consensus 113 ~tv~enl~-~~~~~~------~~~~~~~~~------------------------~---~l~----~~l~~~~~~~~~~~~ 154 (290)
T 2bbs_A 113 GTIKENII-GVSYDE------YRYRSVIKA------------------------C---QLE----EDISKFAEKDNIVLG 154 (290)
T ss_dssp SBHHHHHH-TTCCCH------HHHHHHHHH------------------------T---TCH----HHHHTSTTGGGCBC-
T ss_pred ccHHHHhh-Ccccch------HHHHHHHHH------------------------h---ChH----HHHHhccccccchhc
Confidence 59999986 321000 000000000 0 001 111111110 01233
Q ss_pred ccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH-cc--CCCeEEEEecCHHHHHhhcCeEEEEcC
Q 006442 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL-GK--QDVPMVIISHDRAFLDQLCTKIVETEM 331 (645)
Q Consensus 255 ~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L-~~--~g~tvIivsHd~~~l~~~~d~i~~l~~ 331 (645)
+.+.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.+ ++ .|+|||+||||++++. .||+|+++++
T Consensus 155 ~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~ 233 (290)
T 2bbs_A 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHE 233 (290)
T ss_dssp ---CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEET
T ss_pred CccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEEC
Confidence 457899999999999999999999999999999999999999999863 32 4889999999999986 5999999999
Q ss_pred ceeEEeccChHHH
Q 006442 332 GVSRTYEGNYSQY 344 (645)
Q Consensus 332 G~~~~~~g~~~~~ 344 (645)
|++. ..|+..+.
T Consensus 234 G~i~-~~g~~~~l 245 (290)
T 2bbs_A 234 GSSY-FYGTFSEL 245 (290)
T ss_dssp TEEE-EEECHHHH
T ss_pred CeEE-EeCCHHHH
Confidence 9984 55766554
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=369.13 Aligned_cols=213 Identities=24% Similarity=0.336 Sum_probs=166.9
Q ss_pred ccEEEEeEEEEeC--CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc----------eE
Q 006442 96 SGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KI 163 (645)
Q Consensus 96 ~~i~i~nls~~y~--~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~----------~i 163 (645)
..|+++|++|+|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +|
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 419 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI 419 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhhe
Confidence 4699999999995 35799999999999999999999999999999999999999999999998643 59
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhc
Q 006442 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (645)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (645)
+||+|+++++ +.||+||+..+.... . .+++.++.+.+ .+.+.+..+-
T Consensus 420 ~~v~Q~~~lf-~~tv~eni~~~~~~~-~----~~~~~~~~~~~---------------------------~~~~~i~~l~ 466 (587)
T 3qf4_A 420 SAVPQETVLF-SGTIKENLKWGREDA-T----DDEIVEAAKIA---------------------------QIHDFIISLP 466 (587)
T ss_dssp EEECSSCCCC-SEEHHHHHTTTCSSC-C----HHHHHHHHHHT---------------------------TCHHHHHTSS
T ss_pred EEECCCCcCc-CccHHHHHhccCCCC-C----HHHHHHHHHHh---------------------------CcHHHHHhcc
Confidence 9999999885 569999996321100 0 00111111100 1111111111
Q ss_pred hhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 006442 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~ 321 (645)
. |+. ...++.+.+||||||||++|||||+++|+||||||||++||+++.+.+.+.|++ .|+|+|+||||++.+.
T Consensus 467 ~--g~~-~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~- 542 (587)
T 3qf4_A 467 E--GYD-SRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL- 542 (587)
T ss_dssp S--GGG-CEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-
T ss_pred c--chh-hHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-
Confidence 1 333 234566899999999999999999999999999999999999999999887753 5899999999999986
Q ss_pred hcCeEEEEcCceeEEeccChHHHHH
Q 006442 322 LCTKIVETEMGVSRTYEGNYSQYVL 346 (645)
Q Consensus 322 ~~d~i~~l~~G~~~~~~g~~~~~~~ 346 (645)
.||+|+++++|++ ...|++++...
T Consensus 543 ~~d~i~vl~~G~i-~~~g~~~el~~ 566 (587)
T 3qf4_A 543 LADKILVLHEGKV-AGFGTHKELLE 566 (587)
T ss_dssp TSSEEEEEETTEE-EEEECHHHHHH
T ss_pred hCCEEEEEECCEE-EEECCHHHHHh
Confidence 7999999999998 45677766543
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-39 Score=364.37 Aligned_cols=203 Identities=23% Similarity=0.445 Sum_probs=173.8
Q ss_pred CcEEEEEeeeeeeCC--eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------
Q 006442 422 RSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~--~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (645)
...|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b5x_A 339 NGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418 (582)
T ss_pred CCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcC
Confidence 457999999999974 67999999999999999999999999999999999999999999999998762
Q ss_pred cchhccchhhcCCCCCCHHHHHHhhh-ccccHHHHHHHHhhcCCChhhhc-----------cCcCcCCHhHHHHHHHHHH
Q 006442 490 PNYFEQNQAEALDLDKTVLETVAEAA-EDWRIDDIKGLLGRCNFKADMLD-----------RKVSLLSGGEKARLAFCKF 557 (645)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~v~~~~-~~~~~~~~~~~L~~~~l~~~~~~-----------~~~~~LSgGqkqrv~lAra 557 (645)
.+|++|+. .+ ++.|+.||+..+. .....+++.++++.+++. +..+ +++.+||||||||++||||
T Consensus 419 i~~v~Q~~--~l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAra 494 (582)
T 3b5x_A 419 FALVSQNV--HL-FNDTIANNIAYAAEGEYTREQIEQAARQAHAM-EFIENMPQGLDTVIGENGTSLSGGQRQRVAIARA 494 (582)
T ss_pred eEEEcCCC--cc-ccccHHHHHhccCCCCCCHHHHHHHHHHCCCH-HHHHhCcccccchhcCCCCcCCHHHHHHHHHHHH
Confidence 24555543 34 3569999998865 344566788888888773 3333 3457999999999999999
Q ss_pred HccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 558 l~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|+++|++|||||||++||+.+++.+.+.|++. +.|+|+||||++.+. .||+|++|++|++++ .|+.+++.+
T Consensus 495 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~~ 567 (582)
T 3b5x_A 495 LLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEIIE-RGRHADLLA 567 (582)
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEE-ECCHHHHHh
Confidence 99999999999999999999999999999875 469999999999997 599999999999985 577777654
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-39 Score=364.16 Aligned_cols=204 Identities=25% Similarity=0.433 Sum_probs=174.6
Q ss_pred CcEEEEEeeeeeeCC--eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------
Q 006442 422 RSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~--~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (645)
...|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b60_A 339 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 418 (582)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred CCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhh
Confidence 456999999999973 68999999999999999999999999999999999999999999999998863
Q ss_pred cchhccchhhcCCCCCCHHHHHHhhh-ccccHHHHHHHHhhcCCChhhhc-----------cCcCcCCHhHHHHHHHHHH
Q 006442 490 PNYFEQNQAEALDLDKTVLETVAEAA-EDWRIDDIKGLLGRCNFKADMLD-----------RKVSLLSGGEKARLAFCKF 557 (645)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~v~~~~-~~~~~~~~~~~L~~~~l~~~~~~-----------~~~~~LSgGqkqrv~lAra 557 (645)
.+|++|+ +.+ ++.|+.||+..+. .....+++.++++.+++. +..+ +++.+||||||||++||||
T Consensus 419 i~~v~Q~--~~l-~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAra 494 (582)
T 3b60_A 419 VALVSQN--VHL-FNDTVANNIAYARTEEYSREQIEEAARMAYAM-DFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA 494 (582)
T ss_dssp EEEECSS--CCC-CSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCH-HHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHH
T ss_pred CeEEccC--CcC-CCCCHHHHHhccCCCCCCHHHHHHHHHHcCCH-HHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 2355554 334 3569999999865 344566788888888873 3333 3457999999999999999
Q ss_pred HccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHH
Q 006442 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSL 631 (645)
Q Consensus 558 l~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~ 631 (645)
|+++|++|||||||++||+.+++.+.+.|++. +.|+|+||||++.+. .||||++|++|++++ .|+.+++.+.
T Consensus 495 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~~~ 568 (582)
T 3b60_A 495 LLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVE-RGTHSELLAQ 568 (582)
T ss_dssp HHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEE-EECHHHHHHH
T ss_pred HHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEE-ecCHHHHHHc
Confidence 99999999999999999999999999999865 569999999999986 599999999999985 5788877653
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-39 Score=367.78 Aligned_cols=203 Identities=21% Similarity=0.385 Sum_probs=173.4
Q ss_pred CcEEEEEeeeeeeCC-eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------c
Q 006442 422 RSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------P 490 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~-~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~ 490 (645)
.+.|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 352 ~~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i 431 (598)
T 3qf4_B 352 RGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSI 431 (598)
T ss_dssp CCCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred CCeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhce
Confidence 345999999999974 67999999999999999999999999999999999999999999999998873 2
Q ss_pred chhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCc-----------CcCCHhHHHHHHHHHHHc
Q 006442 491 NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKV-----------SLLSGGEKARLAFCKFMV 559 (645)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~-----------~~LSgGqkqrv~lAral~ 559 (645)
+|++|+ +.+ ++.|++||+..+......+++.+.++.+++. +..++.+ .+||||||||++|||||+
T Consensus 432 ~~v~Q~--~~l-f~~tv~eni~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~ 507 (598)
T 3qf4_B 432 GIVLQD--TIL-FSTTVKENLKYGNPGATDEEIKEAAKLTHSD-HFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFL 507 (598)
T ss_dssp EEECTT--CCC-CSSBHHHHHHSSSTTCCTTHHHHHTTTTTCH-HHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHH
T ss_pred EEEeCC--Ccc-ccccHHHHHhcCCCCCCHHHHHHHHHHhCCH-HHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 455554 334 4679999999875444555677777777763 3333333 689999999999999999
Q ss_pred cCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 560 ~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
++|++|||||||++||+.++..+.+.|.+. +.|+|+||||++.+.. ||+|++|++|++++ .|+.+++.+
T Consensus 508 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~-~g~~~~l~~ 578 (598)
T 3qf4_B 508 ANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVE-MGKHDELIQ 578 (598)
T ss_dssp TCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEEE-CSCHHHHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 999999999999999999999999999865 5699999999999976 99999999999986 588887754
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=370.13 Aligned_cols=212 Identities=26% Similarity=0.437 Sum_probs=164.2
Q ss_pred ccEEEEeEEEEeCC--eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc----------eE
Q 006442 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KI 163 (645)
Q Consensus 96 ~~i~i~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~----------~i 163 (645)
..|+++|++|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +|
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i 417 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 45999999999964 4699999999999999999999999999999999999999999999987532 59
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhc
Q 006442 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (645)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (645)
|||+|+|+++ +.||+||+..+..... .+++.++++.+ .+.+.+..+-
T Consensus 418 ~~v~Q~~~l~-~~tv~eni~~~~~~~~-----~~~~~~~~~~~---------------------------~~~~~~~~lp 464 (578)
T 4a82_A 418 GLVQQDNILF-SDTVKENILLGRPTAT-----DEEVVEAAKMA---------------------------NAHDFIMNLP 464 (578)
T ss_dssp EEECSSCCCC-SSBHHHHHGGGCSSCC-----HHHHHHHHHHT---------------------------TCHHHHHTST
T ss_pred EEEeCCCccC-cccHHHHHhcCCCCCC-----HHHHHHHHHHh---------------------------CcHHHHHhCc
Confidence 9999999885 4599999964321100 00111111110 0011111111
Q ss_pred hhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 006442 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~ 321 (645)
. |+.+ ...+.+.+||||||||++|||||+++|++|||||||++||+.+.+.+.+.+++ .++|+|+||||++.+..
T Consensus 465 ~--g~~t-~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~ 541 (578)
T 4a82_A 465 Q--GYDT-EVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH 541 (578)
T ss_dssp T--GGGC-BCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT
T ss_pred c--hhhh-hhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc
Confidence 1 2222 23345689999999999999999999999999999999999999999887743 57899999999999865
Q ss_pred hcCeEEEEcCceeEEeccChHHHH
Q 006442 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 322 ~~d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
||+|+++++|++ ...|+.++..
T Consensus 542 -~d~i~~l~~G~i-~~~g~~~el~ 563 (578)
T 4a82_A 542 -ADKIVVIENGHI-VETGTHRELI 563 (578)
T ss_dssp -CSEEEEEETTEE-EEEECHHHHH
T ss_pred -CCEEEEEECCEE-EEECCHHHHH
Confidence 999999999998 4567766543
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-39 Score=364.62 Aligned_cols=205 Identities=23% Similarity=0.369 Sum_probs=173.5
Q ss_pred CcEEEEEeeeeeeC--CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------
Q 006442 422 RSVVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~--~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (645)
...|+++||+++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 418 (587)
T 3qf4_A 339 EGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGH 418 (587)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHH
T ss_pred CCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhh
Confidence 44699999999995 467999999999999999999999999999999999999999999999998763
Q ss_pred cchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCCh----------hhhccCcCcCCHhHHHHHHHHHHHc
Q 006442 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA----------DMLDRKVSLLSGGEKARLAFCKFMV 559 (645)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSgGqkqrv~lAral~ 559 (645)
.+|++|+ +.+ ++.|++||+..+......+++.+.++..++.. ...++++.+||||||||++|||||+
T Consensus 419 i~~v~Q~--~~l-f~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~ 495 (587)
T 3qf4_A 419 ISAVPQE--TVL-FSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALV 495 (587)
T ss_dssp EEEECSS--CCC-CSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHH
T ss_pred eEEECCC--CcC-cCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHH
Confidence 2455554 334 46699999987765555556666666655421 1235667899999999999999999
Q ss_pred cCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHH
Q 006442 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSL 631 (645)
Q Consensus 560 ~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~ 631 (645)
++|++|||||||++||+++++.+.+.|++. +.|+|+||||++.+. .||||++|++|++++ .|+++++.+.
T Consensus 496 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~-~g~~~el~~~ 567 (587)
T 3qf4_A 496 KKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKVAG-FGTHKELLEH 567 (587)
T ss_dssp TCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEEEE-EECHHHHHHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEEEE-ECCHHHHHhC
Confidence 999999999999999999999999999865 469999999999986 699999999999986 5888877653
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-39 Score=366.64 Aligned_cols=213 Identities=22% Similarity=0.364 Sum_probs=164.9
Q ss_pred ccEEEEeEEEEeCC--eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceE
Q 006442 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (645)
Q Consensus 96 ~~i~i~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i 163 (645)
..|+++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .+|
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence 46999999999975 679999999999999999999999999999999999999999999998743 259
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhc
Q 006442 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (645)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (645)
+|++|+|.++. .||+||+..+...... .+++.+.++.+ .+.+.++++-
T Consensus 420 ~~v~Q~~~l~~-~tv~eni~~~~~~~~~----~~~~~~~~~~~---------------------------~l~~~~~~~p 467 (582)
T 3b5x_A 420 ALVSQNVHLFN-DTIANNIAYAAEGEYT----REQIEQAARQA---------------------------HAMEFIENMP 467 (582)
T ss_pred EEEcCCCcccc-ccHHHHHhccCCCCCC----HHHHHHHHHHC---------------------------CCHHHHHhCc
Confidence 99999998854 6999999643200000 01111111110 0111111110
Q ss_pred hhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 006442 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~ 321 (645)
-|+.+ ...+.+.+||||||||++|||||+++|++|||||||++||+.+++.+.+.|++ .|+|+|+||||++.+.
T Consensus 468 --~g~~t-~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~- 543 (582)
T 3b5x_A 468 --QGLDT-VIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE- 543 (582)
T ss_pred --ccccc-hhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-
Confidence 03332 23445789999999999999999999999999999999999999999887753 4899999999999987
Q ss_pred hcCeEEEEcCceeEEeccChHHHH
Q 006442 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 322 ~~d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
.||+|+++++|++. ..|+.++..
T Consensus 544 ~~d~i~~l~~G~i~-~~g~~~~l~ 566 (582)
T 3b5x_A 544 QADEILVVDEGEII-ERGRHADLL 566 (582)
T ss_pred hCCEEEEEECCEEE-EECCHHHHH
Confidence 69999999999984 557765543
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-39 Score=363.59 Aligned_cols=204 Identities=26% Similarity=0.468 Sum_probs=173.6
Q ss_pred CcEEEEEeeeeeeCC--eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------
Q 006442 422 RSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~--~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (645)
...|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 337 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~ 416 (578)
T 4a82_A 337 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 416 (578)
T ss_dssp SCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred CCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 446999999999974 57999999999999999999999999999999999999999999999998863
Q ss_pred cchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhh-----------ccCcCcCCHhHHHHHHHHHHH
Q 006442 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML-----------DRKVSLLSGGEKARLAFCKFM 558 (645)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~-----------~~~~~~LSgGqkqrv~lAral 558 (645)
.+|++|+ +.+ ++.|++||+..+......+++.+.++.+++. +.. +.+..+||||||||++|||||
T Consensus 417 i~~v~Q~--~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~-~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral 492 (578)
T 4a82_A 417 IGLVQQD--NIL-FSDTVKENILLGRPTATDEEVVEAAKMANAH-DFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIF 492 (578)
T ss_dssp EEEECSS--CCC-CSSBHHHHHGGGCSSCCHHHHHHHHHHTTCH-HHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred eEEEeCC--Ccc-CcccHHHHHhcCCCCCCHHHHHHHHHHhCcH-HHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHH
Confidence 2455654 334 4569999998876555566677777777663 222 234468999999999999999
Q ss_pred ccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHH
Q 006442 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSL 631 (645)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~ 631 (645)
+++|++|||||||++||++++..+.+.+++. +.|+|+||||++++.. ||||++|++|++++ .|+.+++.+.
T Consensus 493 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~-~g~~~el~~~ 565 (578)
T 4a82_A 493 LNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHIVE-TGTHRELIAK 565 (578)
T ss_dssp HHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEEEEETTEEEE-EECHHHHHHT
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHHhC
Confidence 9999999999999999999999999999865 4699999999999975 99999999999986 5888887653
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=368.87 Aligned_cols=212 Identities=25% Similarity=0.366 Sum_probs=164.6
Q ss_pred ccEEEEeEEEEeCC-eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc----------eEE
Q 006442 96 SGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIA 164 (645)
Q Consensus 96 ~~i~i~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~----------~i~ 164 (645)
..|+++|++|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +|+
T Consensus 353 ~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 432 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIG 432 (598)
T ss_dssp CCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEE
T ss_pred CeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceE
Confidence 45999999999964 5799999999999999999999999999999999999999999999987542 599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
|++|+|+++ +.||+||+..+.... . .+++.+.++ ...+...+..+-.
T Consensus 433 ~v~Q~~~lf-~~tv~eni~~~~~~~-~----~~~~~~~~~---------------------------~~~~~~~~~~~~~ 479 (598)
T 3qf4_B 433 IVLQDTILF-STTVKENLKYGNPGA-T----DEEIKEAAK---------------------------LTHSDHFIKHLPE 479 (598)
T ss_dssp EECTTCCCC-SSBHHHHHHSSSTTC-C----TTHHHHHTT---------------------------TTTCHHHHHTSTT
T ss_pred EEeCCCccc-cccHHHHHhcCCCCC-C----HHHHHHHHH---------------------------HhCCHHHHHhccc
Confidence 999999875 579999996421100 0 000111111 1111111211111
Q ss_pred hcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhh
Q 006442 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQL 322 (645)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~ 322 (645)
|+.+ ...+...+||||||||++|||||+++|++|||||||++||+.+...+.+.|++ .|+|+|+||||++.+..
T Consensus 480 --g~~t-~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~- 555 (598)
T 3qf4_B 480 --GYET-VLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN- 555 (598)
T ss_dssp --GGGC-BCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-
T ss_pred --cccc-hhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-
Confidence 2221 22233589999999999999999999999999999999999999999887753 58999999999999976
Q ss_pred cCeEEEEcCceeEEeccChHHHH
Q 006442 323 CTKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 323 ~d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
||+|+++++|++ ...|+.++..
T Consensus 556 ~d~i~~l~~G~i-~~~g~~~~l~ 577 (598)
T 3qf4_B 556 ADLIIVLRDGEI-VEMGKHDELI 577 (598)
T ss_dssp CSEEEEECSSSE-EECSCHHHHH
T ss_pred CCEEEEEECCEE-EEECCHHHHH
Confidence 999999999998 4668776654
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-39 Score=366.00 Aligned_cols=213 Identities=24% Similarity=0.392 Sum_probs=164.7
Q ss_pred ccEEEEeEEEEeCC--eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc----------eE
Q 006442 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KI 163 (645)
Q Consensus 96 ~~i~i~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~----------~i 163 (645)
..|+++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +|
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence 45999999999974 6799999999999999999999999999999999999999999999987532 59
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhc
Q 006442 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (645)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (645)
+|++|+|.++. .||+||+..+...... .+++.+.++.+ .+.+.++++-
T Consensus 420 ~~v~Q~~~l~~-~tv~eni~~~~~~~~~----~~~~~~~l~~~---------------------------~l~~~~~~~p 467 (582)
T 3b60_A 420 ALVSQNVHLFN-DTVANNIAYARTEEYS----REQIEEAARMA---------------------------YAMDFINKMD 467 (582)
T ss_dssp EEECSSCCCCS-SBHHHHHHTTTTSCCC----HHHHHHHHHTT---------------------------TCHHHHHHST
T ss_pred eEEccCCcCCC-CCHHHHHhccCCCCCC----HHHHHHHHHHc---------------------------CCHHHHHhcc
Confidence 99999998865 6999999643200000 01111111111 1111111110
Q ss_pred hhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 006442 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~ 321 (645)
. |+.+ ..++.+.+||||||||++|||||+++|++|||||||++||+.+++.+.+.|++ .|+|+|+||||++.+.
T Consensus 468 ~--g~~~-~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~- 543 (582)
T 3b60_A 468 N--GLDT-IIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE- 543 (582)
T ss_dssp T--GGGS-BCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-
T ss_pred c--cccc-cccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-
Confidence 0 2322 33445789999999999999999999999999999999999999999887753 4899999999999986
Q ss_pred hcCeEEEEcCceeEEeccChHHHH
Q 006442 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 322 ~~d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
.||+|+++++|++. ..|+.++..
T Consensus 544 ~~d~i~~l~~G~i~-~~g~~~~l~ 566 (582)
T 3b60_A 544 QADEIVVVEDGIIV-ERGTHSELL 566 (582)
T ss_dssp TCSEEEEEETTEEE-EEECHHHHH
T ss_pred hCCEEEEEECCEEE-EecCHHHHH
Confidence 69999999999984 557765543
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=329.50 Aligned_cols=196 Identities=23% Similarity=0.387 Sum_probs=148.2
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCC
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~ 502 (645)
+.|+++|+++.+ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| ..+|++|+. .++
T Consensus 39 ~~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g---~i~~v~Q~~--~l~ 111 (290)
T 2bbs_A 39 DSLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---RISFCSQNS--WIM 111 (290)
T ss_dssp -----------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS---CEEEECSSC--CCC
T ss_pred ceEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC---EEEEEeCCC--ccC
Confidence 469999999864 6799999999999999999999999999999999999999999999998 357777763 343
Q ss_pred CCCCHHHHHHhhhccccHHHHHHHHhhcCCChh----------hhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCC
Q 006442 503 LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD----------MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572 (645)
Q Consensus 503 ~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~ 572 (645)
. .|+.+|+. ... .........++.+++... ..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 112 ~-~tv~enl~-~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts 188 (290)
T 2bbs_A 112 P-GTIKENII-GVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFG 188 (290)
T ss_dssp S-SBHHHHHH-TTC-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTT
T ss_pred c-ccHHHHhh-Ccc-cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcc
Confidence 3 59999998 432 222233444555555211 1223457999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHH-Hhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 573 HLDIPSKEMLEEAI-SEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 573 ~LD~~s~~~l~~~l-~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
+||+.++..+.+.+ .+. +.|||+||||++++. .||++++|++|+++. .|+.+++..
T Consensus 189 ~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~~ 247 (290)
T 2bbs_A 189 YLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYF-YGTFSELQN 247 (290)
T ss_dssp TCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTEEEE-EECHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCeEEE-eCCHHHHhh
Confidence 99999999999974 443 469999999999986 599999999999985 477766643
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-37 Score=346.48 Aligned_cols=200 Identities=28% Similarity=0.387 Sum_probs=168.1
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCC
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~ 174 (645)
...++++|+++.|++. .|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ ...|+|++|++...+
T Consensus 285 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~---~~~i~~v~Q~~~~~~ 360 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW---DLTVAYKPQYIKADY 360 (538)
T ss_dssp CEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC---CCCEEEECSSCCCCC
T ss_pred CeEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE---CceEEEEecCCcCCC
Confidence 4579999999999875 699999999999999999999999999999999999999999986 347999999987767
Q ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCccccc
Q 006442 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (645)
Q Consensus 175 ~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~ 254 (645)
..||.+++...... .. ...+.+.++++.+|+. +..+
T Consensus 361 ~~tv~~~~~~~~~~-------------~~------------------------------~~~~~~~~~l~~~~l~-~~~~ 396 (538)
T 1yqt_A 361 EGTVYELLSKIDAS-------------KL------------------------------NSNFYKTELLKPLGII-DLYD 396 (538)
T ss_dssp SSBHHHHHHHHHHH-------------HH------------------------------TCHHHHHHTTTTTTCG-GGTT
T ss_pred CCcHHHHHHhhhcc-------------CC------------------------------CHHHHHHHHHHHcCCh-hhhc
Confidence 88997775421000 00 0023456788999996 6789
Q ss_pred ccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCeEEEEc
Q 006442 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETE 330 (645)
Q Consensus 255 ~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d~i~~l~ 330 (645)
+++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|++ .|.|||+||||++++..+||+|++|+
T Consensus 397 ~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~ 476 (538)
T 1yqt_A 397 REVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFE 476 (538)
T ss_dssp SBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999999888753 48999999999999999999999998
Q ss_pred C--ceeEEeccChHH
Q 006442 331 M--GVSRTYEGNYSQ 343 (645)
Q Consensus 331 ~--G~~~~~~g~~~~ 343 (645)
+ |.. ...|...+
T Consensus 477 ~~~~~~-~~~g~~~~ 490 (538)
T 1yqt_A 477 GEPGKY-GRALPPMG 490 (538)
T ss_dssp EETTTE-EEECCCEE
T ss_pred CCcceE-eecCCHHH
Confidence 5 333 23455443
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-37 Score=344.30 Aligned_cols=192 Identities=25% Similarity=0.327 Sum_probs=163.8
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCC
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~ 174 (645)
...++++|+++.|++. .|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+.+ ..++|++|++...+
T Consensus 267 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~--~~i~~~~q~~~~~~ 343 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK--QILSYKPQRIFPNY 343 (538)
T ss_dssp CEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC--CCEEEECSSCCCCC
T ss_pred cceEEEcceEEEECCE-EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC--eeeEeechhccccc
Confidence 4579999999999874 57888999999999999999999999999999999999999999764 46999999987666
Q ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCccccc
Q 006442 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (645)
Q Consensus 175 ~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~ 254 (645)
..||.+|+..... . ... .....+.++++.+|+. +..+
T Consensus 344 ~~tv~~~l~~~~~-----------------~-----------------------~~~--~~~~~~~~~l~~~~l~-~~~~ 380 (538)
T 3ozx_A 344 DGTVQQYLENASK-----------------D-----------------------ALS--TSSWFFEEVTKRLNLH-RLLE 380 (538)
T ss_dssp SSBHHHHHHHHCS-----------------S-----------------------TTC--TTSHHHHHTTTTTTGG-GCTT
T ss_pred CCCHHHHHHHhhh-----------------h-----------------------ccc--hhHHHHHHHHHHcCCH-HHhc
Confidence 7899998742100 0 000 0112356778888986 6789
Q ss_pred ccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcCeEEEEc
Q 006442 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETE 330 (645)
Q Consensus 255 ~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d~i~~l~ 330 (645)
+++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+ +.|+|||+||||++++..+||||++|+
T Consensus 381 ~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~ 460 (538)
T 3ozx_A 381 SNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFK 460 (538)
T ss_dssp SBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 9999999999999999999999999999999999999999999888774 358999999999999999999999998
Q ss_pred Cc
Q 006442 331 MG 332 (645)
Q Consensus 331 ~G 332 (645)
++
T Consensus 461 ~~ 462 (538)
T 3ozx_A 461 GE 462 (538)
T ss_dssp EE
T ss_pred CC
Confidence 64
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-37 Score=348.67 Aligned_cols=200 Identities=29% Similarity=0.402 Sum_probs=167.5
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCC
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~ 174 (645)
...++++|++++|++. .|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+ ...|+|++|++...+
T Consensus 355 ~~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~---~~~i~~v~Q~~~~~~ 430 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW---DLTVAYKPQYIKAEY 430 (607)
T ss_dssp CEEEEECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC---CCCEEEECSSCCCCC
T ss_pred ceEEEEeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE---eeEEEEEecCccCCC
Confidence 4579999999999764 689999999999999999999999999999999999999999986 347999999987777
Q ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCccccc
Q 006442 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (645)
Q Consensus 175 ~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~ 254 (645)
..||.+++....... . ...+.+.++++.+|+. +..+
T Consensus 431 ~~tv~e~~~~~~~~~-------------~------------------------------~~~~~~~~~l~~~~l~-~~~~ 466 (607)
T 3bk7_A 431 EGTVYELLSKIDSSK-------------L------------------------------NSNFYKTELLKPLGII-DLYD 466 (607)
T ss_dssp SSBHHHHHHHHHHHH-------------H------------------------------HCHHHHHHTHHHHTCT-TTTT
T ss_pred CCcHHHHHHhhhccC-------------C------------------------------CHHHHHHHHHHHcCCc-hHhc
Confidence 889988764210000 0 0013455678888986 6789
Q ss_pred ccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcCeEEEEc
Q 006442 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETE 330 (645)
Q Consensus 255 ~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d~i~~l~ 330 (645)
+++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+ +.|+|||+||||++++..+||+|++++
T Consensus 467 ~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~ 546 (607)
T 3bk7_A 467 RNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE 546 (607)
T ss_dssp SBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc
Confidence 9999999999999999999999999999999999999999999988775 358999999999999999999999998
Q ss_pred C--ceeEEeccChHH
Q 006442 331 M--GVSRTYEGNYSQ 343 (645)
Q Consensus 331 ~--G~~~~~~g~~~~ 343 (645)
+ |.. ...|...+
T Consensus 547 ~~~g~~-~~~g~p~~ 560 (607)
T 3bk7_A 547 GEPGRH-GRALPPMG 560 (607)
T ss_dssp EETTTE-EEECCCEE
T ss_pred CCcceE-EecCCHHH
Confidence 5 433 23455443
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=373.08 Aligned_cols=203 Identities=23% Similarity=0.418 Sum_probs=176.2
Q ss_pred CcEEEEEeeeeeeCC---eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---------
Q 006442 422 RSVVTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~---~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------- 489 (645)
++-|+++||+|+|++ +++|+|+||+|++|+++||+||+|||||||+++|.|+++|++|+|.+||.++.
T Consensus 413 ~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~ 492 (1321)
T 4f4c_A 413 KGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRK 492 (1321)
T ss_dssp CCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHH
T ss_pred CCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhh
Confidence 345999999999963 57999999999999999999999999999999999999999999999999874
Q ss_pred -cchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhh----------hccCcCcCCHhHHHHHHHHHHH
Q 006442 490 -PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM----------LDRKVSLLSGGEKARLAFCKFM 558 (645)
Q Consensus 490 -~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~----------~~~~~~~LSgGqkqrv~lAral 558 (645)
.+|++|+ ...++.|++|||.++.+....+++.++++.+++.... ......+||||||||++||||+
T Consensus 493 ~i~~v~Q~---~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl 569 (1321)
T 4f4c_A 493 NVAVVSQE---PALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARAL 569 (1321)
T ss_dssp HEEEECSS---CCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHH
T ss_pred cccccCCc---ceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHH
Confidence 2455554 3457899999999987767778888888887763211 1234458999999999999999
Q ss_pred ccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
+++|+|||||||||+||++++..+++.|.+. ++|+|+|||++.++.. ||+|++|++|+|++ .|++++++
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~-aD~Iivl~~G~ive-~Gth~eL~ 640 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRN-ADLIISCKNGQVVE-VGDHRALM 640 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTT-CSEEEEEETTEEEE-EECHHHHH
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHh-CCEEEEeeCCeeec-cCCHHHHH
Confidence 9999999999999999999999999999875 5699999999999976 99999999999996 57877765
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-36 Score=368.52 Aligned_cols=204 Identities=25% Similarity=0.468 Sum_probs=172.4
Q ss_pred CcEEEEEeeeeeeCC---eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---------
Q 006442 422 RSVVTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~---~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------- 489 (645)
++.|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 385 ~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~ 464 (1284)
T 3g5u_A 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLRE 464 (1284)
T ss_dssp CCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHh
Confidence 345999999999974 36999999999999999999999999999999999999999999999998863
Q ss_pred -cchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCCh----------hhhccCcCcCCHhHHHHHHHHHHH
Q 006442 490 -PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA----------DMLDRKVSLLSGGEKARLAFCKFM 558 (645)
Q Consensus 490 -~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSgGqkqrv~lAral 558 (645)
.+|++|++ .+ ++.|++||+..+......+++.+.++..++.. ........+|||||||||+|||||
T Consensus 465 ~i~~v~Q~~--~l-~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal 541 (1284)
T 3g5u_A 465 IIGVVSQEP--VL-FATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARAL 541 (1284)
T ss_dssp HEEEECSSC--CC-CSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHH
T ss_pred heEEEcCCC--cc-CCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHH
Confidence 34566653 34 46699999998765555666666666655421 112345668999999999999999
Q ss_pred ccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
+++|+|||||||||+||++++..+++.++.. +.|+|+||||++++.. ||+|++|++|++++ .|+++++.+
T Consensus 542 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~-~g~~~~l~~ 613 (1284)
T 3g5u_A 542 VRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVE-QGNHDELMR 613 (1284)
T ss_dssp HHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCCCC-EECHHHHHH
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 9999999999999999999999999999754 5699999999999977 99999999999985 588887764
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-35 Score=341.71 Aligned_cols=197 Identities=31% Similarity=0.537 Sum_probs=166.2
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECcee----cccchhccchhh
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN----VLPNYFEQNQAE 499 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~----~~~~~~~q~~~~ 499 (645)
.|...|++++|+++.+|+++||+|++|++++|+||||||||||+++|+| |+| +|.+ ....|+.|+. .
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~~~~~~~v~q~~-~ 505 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQEECRTVYVEHDI-D 505 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTTTSCEEETTCCC-C
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCccccceeEEEEcccc-c
Confidence 4666699999999999999999999999999999999999999999995 222 2222 1223444432 2
Q ss_pred cCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHH
Q 006442 500 ALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK 579 (645)
Q Consensus 500 ~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~ 579 (645)
.+....|+.+++....... .+++..+|+.+|+..+..++++.+|||||||||+|||||+.+|+||||||||+|||+.++
T Consensus 506 ~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~ 584 (986)
T 2iw3_A 506 GTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNV 584 (986)
T ss_dssp CCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHH
T ss_pred ccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHH
Confidence 3456789999997521111 567889999999965678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 580 EMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 580 ~~l~~~l~~~~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
..+.+.|++.+.|||+||||++++.++||++++|++|+++.+.|+++++.+
T Consensus 585 ~~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 585 AWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999999998667999999999999999999999999999867799998875
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-35 Score=329.92 Aligned_cols=197 Identities=23% Similarity=0.302 Sum_probs=161.4
Q ss_pred EeEEEEeCCe-eeeeeeeEEEECC-----cEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCC
Q 006442 101 ENISKSYKGV-TVLKDVTWEVKKG-----EKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (645)
Q Consensus 101 ~nls~~y~~~-~vL~~vsl~i~~G-----e~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~ 174 (645)
++++++|++. ++++++||++.+| |+++|+||||||||||+++|+|+++|++|+.. ....++|++|++...+
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~---~~~~i~~~~q~~~~~~ 426 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI---PKLNVSMKPQKIAPKF 426 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC---CSCCEEEECSSCCCCC
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc---cCCcEEEecccccccC
Confidence 5678899764 5899999999999 78999999999999999999999999999842 2457999999987667
Q ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCccccc
Q 006442 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (645)
Q Consensus 175 ~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~ 254 (645)
..||++++...+.. .......+.++++.+|+. +..+
T Consensus 427 ~~tv~e~~~~~~~~-------------------------------------------~~~~~~~~~~~l~~l~l~-~~~~ 462 (608)
T 3j16_B 427 PGTVRQLFFKKIRG-------------------------------------------QFLNPQFQTDVVKPLRID-DIID 462 (608)
T ss_dssp CSBHHHHHHHHCSS-------------------------------------------TTTSHHHHHHTHHHHTST-TTSS
T ss_pred CccHHHHHHHHhhc-------------------------------------------ccccHHHHHHHHHHcCCh-hhhc
Confidence 78999876421100 000012345677788886 6789
Q ss_pred ccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcCeEEEEc
Q 006442 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETE 330 (645)
Q Consensus 255 ~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d~i~~l~ 330 (645)
+++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+ +.|+|||+||||++++..+||||++++
T Consensus 463 ~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~ 542 (608)
T 3j16_B 463 QEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFE 542 (608)
T ss_dssp SBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECE
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 9999999999999999999999999999999999999999998887764 358999999999999999999999998
Q ss_pred C--ceeEEeccChHHHH
Q 006442 331 M--GVSRTYEGNYSQYV 345 (645)
Q Consensus 331 ~--G~~~~~~g~~~~~~ 345 (645)
+ |+. ...|+..+..
T Consensus 543 ~~~g~~-~~~g~p~~~~ 558 (608)
T 3j16_B 543 GIPSKN-AHARAPESLL 558 (608)
T ss_dssp EETTTE-EECCCCEEHH
T ss_pred CCCCeE-EecCChHHHh
Confidence 6 554 4556655443
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-32 Score=311.93 Aligned_cols=192 Identities=23% Similarity=0.301 Sum_probs=131.8
Q ss_pred CeeceeeeeEEEecCcEEEEEcCCCCcHHHHH---------------------HHHHcCCCCCe-------eEEEECcee
Q 006442 436 DRLLFNRANLTIERGEKTAIIGPNGCGKSTLL---------------------KLIMGLEKPRG-------GEVLLGEHN 487 (645)
Q Consensus 436 ~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl---------------------~~l~g~~~p~~-------G~i~~~g~~ 487 (645)
...+|+|+||+|++||++||+||||||||||+ +++.|+.+|+. |.|.+++.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 35689999999999999999999999999998 89999999984 445555543
Q ss_pred cc------cchhccch-----------------hhcCCCCCCHHHHHHhhhcc------cc--------HHHHHHHHhhc
Q 006442 488 VL------PNYFEQNQ-----------------AEALDLDKTVLETVAEAAED------WR--------IDDIKGLLGRC 530 (645)
Q Consensus 488 ~~------~~~~~q~~-----------------~~~l~~~~tv~e~v~~~~~~------~~--------~~~~~~~L~~~ 530 (645)
.. .+++.|.. .....+.+|+.+|+...... .. ..+....|+.+
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHT
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHc
Confidence 21 12222211 11122456888887653110 00 01123458889
Q ss_pred CCChhhhccCcCcCCHhHHHHHHHHHHHccCCC--eEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHh
Q 006442 531 NFKADMLDRKVSLLSGGEKARLAFCKFMVKPST--LLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQ 605 (645)
Q Consensus 531 ~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~--lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~ 605 (645)
|+.....++++.+|||||||||+|||||+.+|+ ||||||||+|||+.++..|.+.|+++ +.|||+||||++++.
T Consensus 190 gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~- 268 (670)
T 3ux8_A 190 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML- 268 (670)
T ss_dssp TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-
T ss_pred CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-
Confidence 986444689999999999999999999999988 99999999999999999999998765 569999999999876
Q ss_pred hCCEEEEE------eCCeEEeeCCChhHHH
Q 006442 606 IVNRVVEV------KGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 606 ~~d~v~~l------~~g~i~~~~~~~~~~~ 629 (645)
.||||++| ++|+++. .|+++++.
T Consensus 269 ~~d~ii~l~~g~~~~~G~i~~-~g~~~~~~ 297 (670)
T 3ux8_A 269 AADYLIDIGPGAGIHGGEVVA-AGTPEEVM 297 (670)
T ss_dssp HCSEEEEECSSSGGGCCSEEE-EECHHHHH
T ss_pred hCCEEEEecccccccCCEEEE-ecCHHHHh
Confidence 59999999 8899985 57777664
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-28 Score=264.71 Aligned_cols=223 Identities=13% Similarity=0.137 Sum_probs=141.9
Q ss_pred eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC--------------------------------------CCcc
Q 006442 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--------------------------------------PDSG 152 (645)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~--------------------------------------p~~G 152 (645)
.++++++|+|++| +++|+|+|||||||||++|.++.. +..|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 5899999999999 999999999999999999977664 4467
Q ss_pred EEEEcCCCc-----------eEEEEeccCccCCCCCHHHH--HHHhhH----HH-HHHHHHHHHHHHHHhhccchh----
Q 006442 153 NVIKAKSNM-----------KIAFLSQEFEVSMSRTVREE--FMSAFK----EE-MEIAGKLERVQKALESAVDDM---- 210 (645)
Q Consensus 153 ~I~~~~~~~-----------~i~~v~Q~~~~~~~~Tv~en--i~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~---- 210 (645)
++.++|... .+++++|+..+... +..+. ++..+. .. ...+....+..+.........
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 888887542 28999998765432 32221 111000 00 000111111111111000000
Q ss_pred -------HHHHhHHHHHHHHH---HHHHhCChhcHHHHHHhhchhcCCCccccc--------------------------
Q 006442 211 -------DLMGRLLDEFDLLQ---RKAQAVNLDTLDAKVSKLMPELGFTADDGD-------------------------- 254 (645)
Q Consensus 211 -------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~-------------------------- 254 (645)
+.+..+.+++.... ..........+...+.+.+..++++.....
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 00111111111100 000011123455667777777776431100
Q ss_pred ---ccCCC-CChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcCeE
Q 006442 255 ---RLVAS-FSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKI 326 (645)
Q Consensus 255 ---~~~~~-LSGGqkqRvaLAraL~~~p--~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~d~i 326 (645)
+++.. |||||||||+||++|+.+| ++|||||||+|||+.++.+|.++|++ .|+|||+||||++++ ..||++
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~i 365 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHHH 365 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEE
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCeE
Confidence 23333 6999999999999999999 99999999999999999999998865 479999999999887 579999
Q ss_pred EEE----cCceeEE
Q 006442 327 VET----EMGVSRT 336 (645)
Q Consensus 327 ~~l----~~G~~~~ 336 (645)
+++ ++|++..
T Consensus 366 ~~l~k~~~~G~~~~ 379 (415)
T 4aby_A 366 YKVEKQVEDGRTVS 379 (415)
T ss_dssp EEEEEEEETTEEEE
T ss_pred EEEEEeccCCceEE
Confidence 999 8887643
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-32 Score=299.60 Aligned_cols=193 Identities=12% Similarity=0.074 Sum_probs=156.4
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCcc-E-EEEcCC-CceEEEEeccCc
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG-N-VIKAKS-NMKIAFLSQEFE 171 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G-~-I~~~~~-~~~i~~v~Q~~~ 171 (645)
.++++++|++|+|+ ++||++++|++++|+||||||||||+|+|+|+++|++| + |.+++. ...++|++|++.
T Consensus 116 ~~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~ 189 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCIS 189 (460)
T ss_dssp CTHHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCE
T ss_pred cchhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchh
Confidence 45689999999995 79999999999999999999999999999999999999 8 998763 346999999974
Q ss_pred c---CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCC
Q 006442 172 V---SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (645)
Q Consensus 172 ~---~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (645)
+ ....|+.+|+ ..... .......+++.+++..+|+
T Consensus 190 l~~~~~~~tv~eni-~~~~~-----------------------------------------~~~~~~~~~~~~ll~~~gl 227 (460)
T 2npi_A 190 ATPISDILDAQLPT-WGQSL-----------------------------------------TSGATLLHNKQPMVKNFGL 227 (460)
T ss_dssp EEECCSCCCTTCTT-CSCBC-----------------------------------------BSSCCSSCCBCCEECCCCS
T ss_pred hcccccccchhhhh-ccccc-----------------------------------------ccCcchHHHHHHHHHHhCC
Confidence 3 3346887776 21100 0000001223467888888
Q ss_pred CcccccccCCCCChHHHHHHHHHHH--HccCCCE----EEEeC-CCCCCCHHHHHHHHHHHccCCCeEEEEecCHH----
Q 006442 249 TADDGDRLVASFSSGWQMRMSLGKI--LLQDPDL----LLLDE-PTNHLDLDTIEWLEGYLGKQDVPMVIISHDRA---- 317 (645)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAra--L~~~p~i----LLLDE-Pts~LD~~~~~~l~~~L~~~g~tvIivsHd~~---- 317 (645)
.. ..+ +.+|||||||||+|||| |+.+|++ ||||| ||++||+. .+.|.+++++.+.|+|+|+||.+
T Consensus 228 ~~-~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~ 303 (460)
T 2npi_A 228 ER-INE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLW 303 (460)
T ss_dssp SS-GGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHH
T ss_pred Cc-ccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhh
Confidence 63 333 78999999999999999 9999999 99999 99999999 88888888888999999999988
Q ss_pred --HHHhhcCe-----EEEEc-CceeEEeccCh
Q 006442 318 --FLDQLCTK-----IVETE-MGVSRTYEGNY 341 (645)
Q Consensus 318 --~l~~~~d~-----i~~l~-~G~~~~~~g~~ 341 (645)
++..+||+ |++|+ +|++. .|+.
T Consensus 304 ~~~~~~~~dr~~~~~vi~l~k~G~iv--~g~~ 333 (460)
T 2npi_A 304 EKVKKTFGPELGNNNIFFIPKLDGVS--AVDD 333 (460)
T ss_dssp HHHHHHHHHHHCGGGEEEECCCTTCC--CCCH
T ss_pred HHHHHHhcccccCCEEEEEeCCCcEE--ECCH
Confidence 77899999 99999 89874 5654
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=284.04 Aligned_cols=237 Identities=14% Similarity=0.148 Sum_probs=149.5
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHH-HHcC-------CCCCccEEE-----------
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRI-IAGQ-------EEPDSGNVI----------- 155 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~-l~G~-------~~p~~G~I~----------- 155 (645)
...|+++|+++ ..|+||||+|++|++++|+|+||||||||+++ |+|. .+|+.|.+.
T Consensus 500 ~~~L~v~~l~~-----~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~ 574 (842)
T 2vf7_A 500 AGWLELNGVTR-----NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSA 574 (842)
T ss_dssp SCEEEEEEEEE-----TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCC
T ss_pred CceEEEEeeee-----cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccc
Confidence 34699999986 26999999999999999999999999999996 7654 456666652
Q ss_pred -EcC---CCceEEEEeccCccC-CCC------CHHHHHHHhhHHHHHHHHHHHHHH-HH---------Hhhc--------
Q 006442 156 -KAK---SNMKIAFLSQEFEVS-MSR------TVREEFMSAFKEEMEIAGKLERVQ-KA---------LESA-------- 206 (645)
Q Consensus 156 -~~~---~~~~i~~v~Q~~~~~-~~~------Tv~eni~~~~~~~~~~~~~~~~~~-~~---------~~~~-------- 206 (645)
..| .-.++.++.|.+.-. +.. .+++.+...|..... .+...+. .. ++.|
T Consensus 575 ~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~--~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 575 RLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPL--AKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp EEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHH--HHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChH--HHhcCCccccccccccccccccccCCCccch
Confidence 122 112366888876321 111 233444322211000 0000000 00 0000
Q ss_pred -----cc-------------hh---------HHHHhHHH--HHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccC
Q 006442 207 -----VD-------------DM---------DLMGRLLD--EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (645)
Q Consensus 207 -----~~-------------~~---------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~ 257 (645)
.+ .. ..+.+.+. ..+. ...+.......++.++|+.+|+.....++++
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~----l~~~~~~~~~~~~~~~L~~~gL~~~~l~~~~ 728 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEA----HDFFADESAIFRALDTLREVGLGYLRLGQPA 728 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHH----HHHTTTSHHHHHHHHHHHHTTCTTSBTTCCG
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHH----HHHhhcchHHHHHHHHHHHcCCCcccccCCc
Confidence 00 00 00000000 0000 0111111123467889999999754568899
Q ss_pred CCCChHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCeEEEE--
Q 006442 258 ASFSSGWQMRMSLGKILLQD---PDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVET-- 329 (645)
Q Consensus 258 ~~LSGGqkqRvaLAraL~~~---p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d~i~~l-- 329 (645)
.+|||||||||+||++|+.+ |+||||||||+|||+.+++.|.++|+ +.|.|||+||||++++ ..||+|++|
T Consensus 729 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aDrii~L~p 807 (842)
T 2vf7_A 729 TELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASDWVLDIGP 807 (842)
T ss_dssp GGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEECS
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEECC
Confidence 99999999999999999996 69999999999999999999988764 4699999999999999 789999999
Q ss_pred ----cCceeEEeccChHHH
Q 006442 330 ----EMGVSRTYEGNYSQY 344 (645)
Q Consensus 330 ----~~G~~~~~~g~~~~~ 344 (645)
++|++ .+.|+.+++
T Consensus 808 ~~g~~~G~I-v~~g~~~el 825 (842)
T 2vf7_A 808 GAGEDGGRL-VAQGTPAEV 825 (842)
T ss_dssp SSGGGCCSE-EEEECHHHH
T ss_pred CCCCCCCEE-EEEcCHHHH
Confidence 67877 456776554
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-31 Score=293.78 Aligned_cols=194 Identities=11% Similarity=0.048 Sum_probs=155.8
Q ss_pred CcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCee-E-EEECceec-ccchhccchh
Q 006442 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG-E-VLLGEHNV-LPNYFEQNQA 498 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G-~-i~~~g~~~-~~~~~~q~~~ 498 (645)
.++++++|+++.|+ ++||++++|++++|+||||||||||+|+|+|+++|++| + |.++|..- ..++++|+..
T Consensus 116 ~~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~ 189 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCIS 189 (460)
T ss_dssp CTHHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCE
T ss_pred cchhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchh
Confidence 45788999999985 79999999999999999999999999999999999999 8 99987321 1345555431
Q ss_pred h-cCCCCCCHHHHHHhhhcc----ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHH--HccCCCe----EEe
Q 006442 499 E-ALDLDKTVLETVAEAAED----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKF--MVKPSTL----LVL 567 (645)
Q Consensus 499 ~-~l~~~~tv~e~v~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAra--l~~~p~l----LlL 567 (645)
. .+....++.+|+ +.... .....+..+++.+|+. +..+ +.+|||||||||+|||| |+.+|++ |||
T Consensus 190 l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~-~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlL 265 (460)
T 2npi_A 190 ATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLE-RINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIV 265 (460)
T ss_dssp EEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSS-SGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEE
T ss_pred hcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCC-cccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEE
Confidence 1 123345777777 43211 1112345667888885 3334 78999999999999999 9999999 999
Q ss_pred eC-CCCCCCHHHHHHHHHHHHhcCceEEEEecCHH------HHHhhCCE-----EEEEe-CCeEEeeCCChhHH
Q 006442 568 DE-PTNHLDIPSKEMLEEAISEYKGTVITVSHDRY------FVKQIVNR-----VVEVK-GSNLQDYAGDYNQV 628 (645)
Q Consensus 568 DE-Pt~~LD~~s~~~l~~~l~~~~~tvi~vsHd~~------~i~~~~d~-----v~~l~-~g~i~~~~~~~~~~ 628 (645)
|| ||++||+. .+.|.+++++++.|+|+|+||.+ ++..+||| |++|+ +|+++ .++.++.
T Consensus 266 DEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv--~g~~~~~ 336 (460)
T 2npi_A 266 DTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS--AVDDVYK 336 (460)
T ss_dssp ECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC--CCCHHHH
T ss_pred eCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE--ECCHHHH
Confidence 99 99999999 88888999998889999999987 88899999 99999 99997 4666654
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=279.55 Aligned_cols=106 Identities=20% Similarity=0.324 Sum_probs=91.8
Q ss_pred HHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEE
Q 006442 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP---DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMV 310 (645)
Q Consensus 237 ~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p---~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvI 310 (645)
.++.++|..+|+.....++++.+|||||||||+|||||+.+| +||||||||+|||+.+++.|.++|+ +.|.|||
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVI 862 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVI 862 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 456678899999755678889999999999999999999876 6999999999999999999988764 4699999
Q ss_pred EEecCHHHHHhhcCeEEEE------cCceeEEeccChHHH
Q 006442 311 IISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQY 344 (645)
Q Consensus 311 ivsHd~~~l~~~~d~i~~l------~~G~~~~~~g~~~~~ 344 (645)
+||||++++.. ||+|++| ++|++ .+.|+..+.
T Consensus 863 vI~HdL~~i~~-ADrIivLgp~gg~~~G~I-v~~Gtpeel 900 (916)
T 3pih_A 863 VIEHNLDVIKN-ADHIIDLGPEGGKEGGYI-VATGTPEEI 900 (916)
T ss_dssp EECCCHHHHTT-CSEEEEEESSSGGGCCEE-EEEESHHHH
T ss_pred EEeCCHHHHHh-CCEEEEecCCCCCCCCEE-EEEcCHHHH
Confidence 99999999865 9999999 78887 567776554
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.7e-28 Score=280.48 Aligned_cols=106 Identities=21% Similarity=0.286 Sum_probs=91.0
Q ss_pred HHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEE
Q 006442 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP---DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVI 311 (645)
Q Consensus 238 ~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p---~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIi 311 (645)
+..++|..+|+.....++++.+|||||||||+||++|+.+| +||||||||+|||+.++..|.++|+ +.|.|||+
T Consensus 824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 903 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 903 (972)
T ss_dssp HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 45678999999754678999999999999999999999875 9999999999999999999988764 46999999
Q ss_pred EecCHHHHHhhcCeEEEE------cCceeEEeccChHHHH
Q 006442 312 ISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYV 345 (645)
Q Consensus 312 vsHd~~~l~~~~d~i~~l------~~G~~~~~~g~~~~~~ 345 (645)
||||++++ ..||+|++| ++|++ .+.|+..+..
T Consensus 904 isHdl~~i-~~aDrIivL~p~gG~~~G~I-v~~g~~~el~ 941 (972)
T 2r6f_A 904 IEHNLDVI-KTADYIIDLGPEGGDRGGQI-VAVGTPEEVA 941 (972)
T ss_dssp ECCCHHHH-TTCSEEEEECSSSTTSCCSE-EEEESHHHHH
T ss_pred EcCCHHHH-HhCCEEEEEcCCCCCCCCEE-EEecCHHHHH
Confidence 99999998 479999999 57877 4567765543
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=258.45 Aligned_cols=76 Identities=20% Similarity=0.216 Sum_probs=71.1
Q ss_pred CCHhHHHHHHHHHHHccCC--CeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEE----eC
Q 006442 544 LSGGEKARLAFCKFMVKPS--TLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEV----KG 615 (645)
Q Consensus 544 LSgGqkqrv~lAral~~~p--~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l----~~ 615 (645)
|||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++ +.|||+||||++++ .+||++++| ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCeEEEEEEeccC
Confidence 6999999999999999999 999999999999999999999999987 47999999999887 579999999 89
Q ss_pred CeEEe
Q 006442 616 SNLQD 620 (645)
Q Consensus 616 g~i~~ 620 (645)
|++..
T Consensus 375 G~~~~ 379 (415)
T 4aby_A 375 GRTVS 379 (415)
T ss_dssp TEEEE
T ss_pred CceEE
Confidence 98864
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.3e-26 Score=242.17 Aligned_cols=81 Identities=23% Similarity=0.329 Sum_probs=74.0
Q ss_pred ccccCCCCChHHHHHHHHHHHHc------cCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhc
Q 006442 253 GDRLVASFSSGWQMRMSLGKILL------QDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLC 323 (645)
Q Consensus 253 ~~~~~~~LSGGqkqRvaLAraL~------~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~ 323 (645)
.++++.+|||||||||+||+||+ .+|++|||||||+|||+.++.++.++|+ +.|.|||+||||+++ ...|
T Consensus 273 ~~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 273 IERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAF 351 (365)
T ss_dssp EEEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTC
T ss_pred cCCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhC
Confidence 35788999999999999999999 7999999999999999999999988774 458999999999998 5679
Q ss_pred CeEEEEcCcee
Q 006442 324 TKIVETEMGVS 334 (645)
Q Consensus 324 d~i~~l~~G~~ 334 (645)
|+++++++|++
T Consensus 352 d~~~~l~~G~i 362 (365)
T 3qf7_A 352 DRKLRITGGVV 362 (365)
T ss_dssp SCEEEEETTEE
T ss_pred CEEEEEECCEE
Confidence 99999999986
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-28 Score=240.09 Aligned_cols=145 Identities=21% Similarity=0.221 Sum_probs=96.3
Q ss_pred EeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEc-------CCCceEEEEeccCccCCCCCH
Q 006442 106 SYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA-------KSNMKIAFLSQEFEVSMSRTV 178 (645)
Q Consensus 106 ~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~-------~~~~~i~~v~Q~~~~~~~~Tv 178 (645)
+|+++.+|+++ ++|++++|+||||||||||+++|+|+ +|++|+|... .....|||++|++
T Consensus 9 ~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 9 TLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp SHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred CHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 35566789986 89999999999999999999999999 9999988431 0123588888875
Q ss_pred HHHH-HHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccC
Q 006442 179 REEF-MSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (645)
Q Consensus 179 ~eni-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~ 257 (645)
.||+ ... .... . .+.. ... ..++.++++. |+
T Consensus 76 ~enl~~~~-~~~~------~----~~~~-----------------------~~~----~~~~~~~l~~-gl--------- 107 (208)
T 3b85_A 76 NEKIDPYL-RPLH------D----ALRD-----------------------MVE----PEVIPKLMEA-GI--------- 107 (208)
T ss_dssp ----CTTT-HHHH------H----HHTT-----------------------TSC----TTHHHHHHHT-TS---------
T ss_pred HHHHHHHH-HHHH------H----HHHH-----------------------hcc----HHHHHHHHHh-CC---------
Confidence 3444 110 0000 0 0000 000 1123333333 22
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 006442 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 258 ~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~ 321 (645)
||||||+|||||+.+|++|||||||++ ++..+.++|++ .|+||| ||||++++..
T Consensus 108 -----Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 108 -----VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp -----EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-EEEC------
T ss_pred -----chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-EECCHHHHhC
Confidence 999999999999999999999999999 78888887764 478999 9999987754
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-25 Score=235.08 Aligned_cols=90 Identities=19% Similarity=0.268 Sum_probs=75.4
Q ss_pred cccccCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcCe
Q 006442 252 DGDRLVASFSSGWQMRMSLGKILL----QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTK 325 (645)
Q Consensus 252 ~~~~~~~~LSGGqkqRvaLAraL~----~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~d~ 325 (645)
..++++.+||||||||++||+||+ .+|++|||||||++||+..++.+.++|++ .+.|||++||+.+ +..+||+
T Consensus 212 ~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~ 290 (322)
T 1e69_A 212 RRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADL 290 (322)
T ss_dssp SCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSE
T ss_pred cccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCce
Confidence 356778999999999999999997 68999999999999999999999988754 3789999999965 5568998
Q ss_pred E--EEEcCceeEEeccChH
Q 006442 326 I--VETEMGVSRTYEGNYS 342 (645)
Q Consensus 326 i--~~l~~G~~~~~~g~~~ 342 (645)
+ +.+.+|.......+.+
T Consensus 291 ~~~v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 291 LHGVTMVNGVSAIVPVEVE 309 (322)
T ss_dssp EEEEEESSSCEEEEECCC-
T ss_pred EEEEEEeCCEEEEEEEEcc
Confidence 7 8888998765554443
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-25 Score=215.41 Aligned_cols=145 Identities=13% Similarity=0.113 Sum_probs=97.4
Q ss_pred eeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCC-CCCHHHHHHHhhHHHHHHH
Q 006442 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM-SRTVREEFMSAFKEEMEIA 193 (645)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~-~~Tv~eni~~~~~~~~~~~ 193 (645)
||||+|++|++++|+||||||||||++++.+-.. .+.. +.-.++++|++.... ..++++++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~------~~~~-d~~~g~~~~~~~~~~~~~~~~~~~~---------- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE------VISS-DFCRGLMSDDENDQTVTGAAFDVLH---------- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG------EEEH-HHHHHHHCSSTTCGGGHHHHHHHHH----------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe------EEcc-HHHHHHhcCcccchhhHHHHHHHHH----------
Confidence 6899999999999999999999999998654221 1111 111245556542110 001111100
Q ss_pred HHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHH
Q 006442 194 GKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273 (645)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 273 (645)
... ......|.. ...+. ....|||||||++||||
T Consensus 64 -------------------------------------------~~~-~~~~~~g~~-~~~~~-~~~~s~g~~qrv~iAra 97 (171)
T 4gp7_A 64 -------------------------------------------YIV-SKRLQLGKL-TVVDA-TNVQESARKPLIEMAKD 97 (171)
T ss_dssp -------------------------------------------HHH-HHHHHTTCC-EEEES-CCCSHHHHHHHHHHHHH
T ss_pred -------------------------------------------HHH-HHHHhCCCe-EEEEC-CCCCHHHHHHHHHHHHH
Confidence 000 001112332 22232 35669999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHH----------------HHHHHHHHHc---cCCCeEEEEecCHHHHHhh
Q 006442 274 LLQDPDLLLLDEPTNHLDLD----------------TIEWLEGYLG---KQDVPMVIISHDRAFLDQL 322 (645)
Q Consensus 274 L~~~p~iLLLDEPts~LD~~----------------~~~~l~~~L~---~~g~tvIivsHd~~~l~~~ 322 (645)
++.+|++|+|||||++||+. ....+.+.++ +.|.|+|++|||++++..+
T Consensus 98 l~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~ 165 (171)
T 4gp7_A 98 YHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEV 165 (171)
T ss_dssp TTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHE
T ss_pred cCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhh
Confidence 99999999999999999999 5577777753 3599999999999999763
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-25 Score=213.15 Aligned_cols=135 Identities=12% Similarity=0.121 Sum_probs=101.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCC-ccEEEEc----CCCceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHH
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKA----KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERV 199 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~~p~-~G~I~~~----~~~~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~ 199 (645)
+++|+||||||||||+++|+|++... .|...-. .....++|++|++ ++.+++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~----------------- 58 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI----------------- 58 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEET------TCCEEE-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecC------cHHHHH-----------------
Confidence 68999999999999999999997522 2322111 1123578888875 111111
Q ss_pred HHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCc-ccccccCCCCChHHHHHHHHHHH-----
Q 006442 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA-DDGDRLVASFSSGWQMRMSLGKI----- 273 (645)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~-~~~~~~~~~LSGGqkqRvaLAra----- 273 (645)
+..+++.. ...++++.+||||||||++||+|
T Consensus 59 -------------------------------------------~~~~~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~ 95 (178)
T 1ye8_A 59 -------------------------------------------FSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREA 95 (178)
T ss_dssp -------------------------------------------EEETTCCCSSEETTEEECHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------HHhhcCCccccccccccCcCHHHHHHHHHHhhccccc
Confidence 00111111 24567789999999999999996
Q ss_pred HccCCCEEEEeC--CCCCCCHHHHHHHHHHHccCCCeEEEEe---cCHHHHHhhcCe
Q 006442 274 LLQDPDLLLLDE--PTNHLDLDTIEWLEGYLGKQDVPMVIIS---HDRAFLDQLCTK 325 (645)
Q Consensus 274 L~~~p~iLLLDE--Pts~LD~~~~~~l~~~L~~~g~tvIivs---Hd~~~l~~~~d~ 325 (645)
|+.+|++||||| ||++||+...+++.+++++.+.|+|+++ ||++++..+|++
T Consensus 96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhc
Confidence 999999999999 9999999999999999988788788888 599999999998
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=225.43 Aligned_cols=82 Identities=26% Similarity=0.438 Sum_probs=75.0
Q ss_pred ccCcCcCCHhHHHHHHHHHHHc------cCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCC
Q 006442 538 DRKVSLLSGGEKARLAFCKFMV------KPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVN 608 (645)
Q Consensus 538 ~~~~~~LSgGqkqrv~lAral~------~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d 608 (645)
++++.+|||||||||+||+||+ .+|++|||||||++||+.++..+.+.|.++ +.|||+||||+++ ...||
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d 352 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFD 352 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCS
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCC
Confidence 5788899999999999999999 799999999999999999999999999865 4699999999998 56799
Q ss_pred EEEEEeCCeEEe
Q 006442 609 RVVEVKGSNLQD 620 (645)
Q Consensus 609 ~v~~l~~g~i~~ 620 (645)
++++|++|+++.
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999863
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-26 Score=228.96 Aligned_cols=146 Identities=14% Similarity=0.141 Sum_probs=95.6
Q ss_pred eeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECcee-----c--ccchhccchhhcC-CC
Q 006442 432 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-----V--LPNYFEQNQAEAL-DL 503 (645)
Q Consensus 432 ~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~-----~--~~~~~~q~~~~~l-~~ 503 (645)
+.|+++.+|+++ ++||+++|+||||||||||+++|+|+ +|++|+|...... . ..+|++|+..+++ ..
T Consensus 8 k~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~ 82 (208)
T 3b85_A 8 KTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPY 82 (208)
T ss_dssp CSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTT
T ss_pred CCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHH
Confidence 356667789985 89999999999999999999999999 9999998431010 0 1234444431122 11
Q ss_pred CCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHH
Q 006442 504 DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583 (645)
Q Consensus 504 ~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~ 583 (645)
..+..+.+. .......+.++++. + | ||||||+|||||+.+|++|||||||++ ++..+.
T Consensus 83 ~~~~~~~~~---~~~~~~~~~~~l~~-g------------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~ 140 (208)
T 3b85_A 83 LRPLHDALR---DMVEPEVIPKLMEA-G------------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMK 140 (208)
T ss_dssp THHHHHHHT---TTSCTTHHHHHHHT-T------------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHH
T ss_pred HHHHHHHHH---HhccHHHHHHHHHh-C------------C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHH
Confidence 000111110 00111233444442 2 2 999999999999999999999999999 888999
Q ss_pred HHHHhc--CceEEEEecCHHHHHh
Q 006442 584 EAISEY--KGTVITVSHDRYFVKQ 605 (645)
Q Consensus 584 ~~l~~~--~~tvi~vsHd~~~i~~ 605 (645)
+.|+++ +.||| ||||++++..
T Consensus 141 ~~l~~l~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 141 MFLTRLGFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp HHHTTBCTTCEEE-EEEC------
T ss_pred HHHHHhcCCCEEE-EECCHHHHhC
Confidence 999876 35888 9999987754
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-25 Score=211.93 Aligned_cols=149 Identities=13% Similarity=0.112 Sum_probs=98.9
Q ss_pred eeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCCCCCCHHHHHHhhhccccHH
Q 006442 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRID 521 (645)
Q Consensus 442 ~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~ 521 (645)
++||+|++||+++|+||||||||||++++.+-. ..+.. +...+++.|+..... ...++++++..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~------~~~~~-d~~~g~~~~~~~~~~-~~~~~~~~~~~-------- 64 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPT------EVISS-DFCRGLMSDDENDQT-VTGAAFDVLHY-------- 64 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGG------GEEEH-HHHHHHHCSSTTCGG-GHHHHHHHHHH--------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCC------eEEcc-HHHHHHhcCcccchh-hHHHHHHHHHH--------
Confidence 689999999999999999999999999865321 11211 112234443321111 11111222111
Q ss_pred HHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHH----------------HHHHHHHH
Q 006442 522 DIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP----------------SKEMLEEA 585 (645)
Q Consensus 522 ~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~----------------s~~~l~~~ 585 (645)
........+... ........|||||||++||||++.+|++|+|||||++||+. ....+.+.
T Consensus 65 -~~~~~~~~g~~~--~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~ 141 (171)
T 4gp7_A 65 -IVSKRLQLGKLT--VVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKS 141 (171)
T ss_dssp -HHHHHHHTTCCE--EEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHH
T ss_pred -HHHHHHhCCCeE--EEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhh
Confidence 111122234321 22344567999999999999999999999999999999999 55777777
Q ss_pred HHhc---CceEEEEecCHHHHHhhCCEE
Q 006442 586 ISEY---KGTVITVSHDRYFVKQIVNRV 610 (645)
Q Consensus 586 l~~~---~~tvi~vsHd~~~i~~~~d~v 610 (645)
|++. +.|+|+||||++++.. ++++
T Consensus 142 l~~l~~~g~tvi~vtH~~~~~~~-~~~~ 168 (171)
T 4gp7_A 142 IKGLQREGFRYVYILNSPEEVEE-VVFE 168 (171)
T ss_dssp STTHHHHTCSEEEEECSHHHHHH-EEEE
T ss_pred hhhHHhcCCcEEEEeCCHHHhhh-hhhc
Confidence 5433 6699999999999976 3443
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-23 Score=221.77 Aligned_cols=90 Identities=29% Similarity=0.399 Sum_probs=75.1
Q ss_pred hccCcCcCCHhHHHHHHHHHHHc----cCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEE
Q 006442 537 LDRKVSLLSGGEKARLAFCKFMV----KPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRV 610 (645)
Q Consensus 537 ~~~~~~~LSgGqkqrv~lAral~----~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v 610 (645)
.+.++..||||||||++||++|+ .+|++|||||||++||+..++.+.+.|+++ +.|||+|||+.+ +.++||++
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~ 291 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLL 291 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceE
Confidence 45678899999999999999996 689999999999999999999999999876 459999999965 55689987
Q ss_pred --EEEeCCeEEeeCCChhH
Q 006442 611 --VEVKGSNLQDYAGDYNQ 627 (645)
Q Consensus 611 --~~l~~g~i~~~~~~~~~ 627 (645)
++|.+|.......+.++
T Consensus 292 ~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEEESSSCEEEEECCC--
T ss_pred EEEEEeCCEEEEEEEEcch
Confidence 88888876554444443
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.89 E-value=4.8e-24 Score=205.54 Aligned_cols=147 Identities=14% Similarity=0.134 Sum_probs=104.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceec----------ccchhccchhhcCCCCCCHHHHHHhhhccccHH
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRID 521 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~----------~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~ 521 (645)
+++|+||||||||||+++|+|++. |.++|.+. ..++..|.. ++.+++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~--------~~~~~~---------- 58 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT--------EGKKKI---------- 58 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET--------TCCEEE----------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC--------cHHHHH----------
Confidence 689999999999999999999985 22233211 112222221 111111
Q ss_pred HHHHHHhhcCCCh-hhhccCcCcCCHhHHHHHHHHHH-----HccCCCeEEeeC--CCCCCCHHHHHHHHHHHHhcCceE
Q 006442 522 DIKGLLGRCNFKA-DMLDRKVSLLSGGEKARLAFCKF-----MVKPSTLLVLDE--PTNHLDIPSKEMLEEAISEYKGTV 593 (645)
Q Consensus 522 ~~~~~L~~~~l~~-~~~~~~~~~LSgGqkqrv~lAra-----l~~~p~lLlLDE--Pt~~LD~~s~~~l~~~l~~~~~tv 593 (645)
+..+++.. ...++++.+||||||||++||+| ++.+|++||||| ||++||+...+.+.+.+.+.+.|+
T Consensus 59 -----~~~~~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~ 133 (178)
T 1ye8_A 59 -----FSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNV 133 (178)
T ss_dssp -----EEETTCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEE
T ss_pred -----HHhhcCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeE
Confidence 11112211 24567788999999999999996 999999999999 999999999999999999876678
Q ss_pred EEEe---cCHHHHHhhCCEEEEEeCCeEEeeC-CChhHHHH
Q 006442 594 ITVS---HDRYFVKQIVNRVVEVKGSNLQDYA-GDYNQVQS 630 (645)
Q Consensus 594 i~vs---Hd~~~i~~~~d~v~~l~~g~i~~~~-~~~~~~~~ 630 (645)
|+++ ||.+++..+|+| .+|++.+.. .+.+++.+
T Consensus 134 i~~~H~~h~~~~~~~i~~r----~~~~i~~~~~~~r~~~~~ 170 (178)
T 1ye8_A 134 VATIPIRDVHPLVKEIRRL----PGAVLIELTPENRDVILE 170 (178)
T ss_dssp EEECCSSCCSHHHHHHHTC----TTCEEEECCTTTTTTHHH
T ss_pred EEEEccCCCchHHHHHHhc----CCcEEEEecCcCHHHHHH
Confidence 8888 599999999998 345554433 34444443
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.5e-26 Score=246.37 Aligned_cols=171 Identities=11% Similarity=0.109 Sum_probs=129.3
Q ss_pred eeeeeeeeEEEECCc--------------------EEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc-eEEEEec
Q 006442 110 VTVLKDVTWEVKKGE--------------------KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-KIAFLSQ 168 (645)
Q Consensus 110 ~~vL~~vsl~i~~Ge--------------------~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~-~i~~v~Q 168 (645)
..+|++|||+|++|+ +++|+||||||||||+|+|+|+++|++|+|.+++... +.+|++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 458999999999999 9999999999999999999999999999998876432 2378999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCC
Q 006442 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (645)
Q Consensus 169 ~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (645)
++ .++..|++|++..... ..++.++++.+++
T Consensus 116 ~~-~~~~ltv~D~~g~~~~------------------------------------------------~~~~~~~L~~~~L 146 (413)
T 1tq4_A 116 HP-NIPNVVFWDLPGIGST------------------------------------------------NFPPDTYLEKMKF 146 (413)
T ss_dssp CS-SCTTEEEEECCCGGGS------------------------------------------------SCCHHHHHHHTTG
T ss_pred cc-ccCCeeehHhhcccch------------------------------------------------HHHHHHHHHHcCC
Confidence 85 3456677766421100 0112344555565
Q ss_pred CcccccccCCCCChH--HHHHHHHHHHHcc----------CCCEEEEeCCCCCCCHHHHHHHHHHHcc--------C---
Q 006442 249 TADDGDRLVASFSSG--WQMRMSLGKILLQ----------DPDLLLLDEPTNHLDLDTIEWLEGYLGK--------Q--- 305 (645)
Q Consensus 249 ~~~~~~~~~~~LSGG--qkqRvaLAraL~~----------~p~iLLLDEPts~LD~~~~~~l~~~L~~--------~--- 305 (645)
.. . +..+. |||| |+||++||+||.. +|++|+|||||+|||+..++.+.+.+++ .
T Consensus 147 ~~-~-~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~ 223 (413)
T 1tq4_A 147 YE-Y-DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA 223 (413)
T ss_dssp GG-C-SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS
T ss_pred Cc-c-CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 32 2 23334 9999 9999999999999 9999999999999999998877655422 2
Q ss_pred -CCeEEEEecCHHH--HHhhcCeEE-EEcCc
Q 006442 306 -DVPMVIISHDRAF--LDQLCTKIV-ETEMG 332 (645)
Q Consensus 306 -g~tvIivsHd~~~--l~~~~d~i~-~l~~G 332 (645)
..+|+++||+++. ++.+||+|. .+..|
T Consensus 224 ~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 224 EPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp SCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred CCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 2568889999987 899999886 34444
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.3e-25 Score=239.63 Aligned_cols=171 Identities=13% Similarity=0.162 Sum_probs=131.3
Q ss_pred eeceeeeeEEEecCc--------------------EEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-cchhcc
Q 006442 437 RLLFNRANLTIERGE--------------------KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-PNYFEQ 495 (645)
Q Consensus 437 ~~~l~~vsl~i~~Ge--------------------~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-~~~~~q 495 (645)
+.+++++|++|++|+ ++||+||||||||||+++|+|+++|++|+|.++|.++. .+++.|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 468999999999999 99999999999999999999999999999999886542 244444
Q ss_pred chhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHh--HHHHHHHHHHHcc----------CCC
Q 006442 496 NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG--EKARLAFCKFMVK----------PST 563 (645)
Q Consensus 496 ~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgG--qkqrv~lAral~~----------~p~ 563 (645)
+. ..+..++.|++..... ...+.++|+.+++. +. +..+. ||+| ||||++||+||+. +|+
T Consensus 116 ~~---~~~~ltv~D~~g~~~~---~~~~~~~L~~~~L~-~~-~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpd 186 (413)
T 1tq4_A 116 HP---NIPNVVFWDLPGIGST---NFPPDTYLEKMKFY-EY-DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVD 186 (413)
T ss_dssp CS---SCTTEEEEECCCGGGS---SCCHHHHHHHTTGG-GC-SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred cc---ccCCeeehHhhcccch---HHHHHHHHHHcCCC-cc-CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCc
Confidence 31 2344566665433321 12366788888874 32 33333 9999 9999999999999 999
Q ss_pred eEEeeCCCCCCCHHHHHHHHHHHHhc------------CceEEEEecCHHH--HHhhCCEEE-EEeCC
Q 006442 564 LLVLDEPTNHLDIPSKEMLEEAISEY------------KGTVITVSHDRYF--VKQIVNRVV-EVKGS 616 (645)
Q Consensus 564 lLlLDEPt~~LD~~s~~~l~~~l~~~------------~~tvi~vsHd~~~--i~~~~d~v~-~l~~g 616 (645)
+|+|||||++||+.++..+.+.|+++ ..+|++.||+++. +.++||++. .|..|
T Consensus 187 lllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 187 SDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp HHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred ccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 99999999999999998888777643 1368889999887 888898885 33333
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.2e-24 Score=221.03 Aligned_cols=173 Identities=18% Similarity=0.242 Sum_probs=132.3
Q ss_pred eCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------------ceEEEEeccC
Q 006442 107 YKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------------MKIAFLSQEF 170 (645)
Q Consensus 107 y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------------~~i~~v~Q~~ 170 (645)
++....++++||++++|++++|+||||||||||++.|+|+++|++|+|.+.+.+ ..|+|++|++
T Consensus 84 l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~ 163 (302)
T 3b9q_A 84 LAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEG 163 (302)
T ss_dssp HCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC-
T ss_pred hCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecC
Confidence 333333467899999999999999999999999999999999999999987642 1489999998
Q ss_pred c-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCC
Q 006442 171 E-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (645)
Q Consensus 171 ~-~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (645)
. ..+..|+++|+..+.. .. .+ ..+++.+|+.
T Consensus 164 ~~~~~~~~v~e~l~~~~~----------------~~------------------------~d--------~~lldt~gl~ 195 (302)
T 3b9q_A 164 DKAKAATVLSKAVKRGKE----------------EG------------------------YD--------VVLCDTSGRL 195 (302)
T ss_dssp -CCCHHHHHHHHHHHHHH----------------TT------------------------CS--------EEEECCCCCS
T ss_pred CccCHHHHHHHHHHHHHH----------------cC------------------------Cc--------chHHhcCCCC
Confidence 7 6667788888642100 00 00 1345667775
Q ss_pred cccccccCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEec---------CHHH
Q 006442 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISH---------DRAF 318 (645)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRvaLAraL~~~p~--iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsH---------d~~~ 318 (645)
+..++.+.+|| |||++|||||+.+|+ +|+|| ||+|||+... +..+-+..|.|+|++|| .+..
T Consensus 196 -~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~--~~~~~~~~g~t~iiiThlD~~~~~g~~l~~ 268 (302)
T 3b9q_A 196 -HTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ--AREFNEVVGITGLILTKLDGSARGGCVVSV 268 (302)
T ss_dssp -SCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH--HHHHHHHTCCCEEEEECCSSCSCTHHHHHH
T ss_pred -cchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH--HHHHHHhcCCCEEEEeCCCCCCccChheeh
Confidence 45567788999 999999999999999 99999 9999998764 33333456899999999 5667
Q ss_pred HHhhcCeEEEEcCcee
Q 006442 319 LDQLCTKIVETEMGVS 334 (645)
Q Consensus 319 l~~~~d~i~~l~~G~~ 334 (645)
+......|.++..|..
T Consensus 269 ~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 269 VEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHHCCCEEEEeCCCC
Confidence 7778889999988853
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-26 Score=239.98 Aligned_cols=163 Identities=13% Similarity=0.133 Sum_probs=121.6
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCCCC
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR 176 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~ 176 (645)
.|+++||+|+|+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|+|. +|++|++.++. .
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~--------~~v~q~~~lf~-~ 167 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL--------SFANHKSHFWL-A 167 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE--------CGGGTTSGGGG-G
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE--------EEecCcccccc-c
Confidence 489999999998 67999999999999999999999999999999999998 89984 46789887643 5
Q ss_pred CHHH-HHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccc
Q 006442 177 TVRE-EFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (645)
Q Consensus 177 Tv~e-ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~ 255 (645)
|+++ |+..... . .+ .+.+.++.+|. ...+
T Consensus 168 ti~~~ni~~~~~------------------~---~~----------------------~~~~~i~~~L~------~gld- 197 (305)
T 2v9p_A 168 SLADTRAALVDD------------------A---TH----------------------ACWRYFDTYLR------NALD- 197 (305)
T ss_dssp GGTTCSCEEEEE------------------E---CH----------------------HHHHHHHHTTT------GGGG-
T ss_pred cHHHHhhccCcc------------------c---cH----------------------HHHHHHHHHhH------ccCC-
Confidence 7776 6531100 0 00 00111222111 1222
Q ss_pred cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcCceeE
Q 006442 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335 (645)
Q Consensus 256 ~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~i~~l~~G~~~ 335 (645)
+..|||||||| ||||+.+|+||| |++||+.+...+.. +||++..+ ..||+| ++++|++
T Consensus 198 -g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~-----------ltH~~~~~-~~aD~i-vl~~G~i- 255 (305)
T 2v9p_A 198 -GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY-----------LHSRVQTF-RFEQPC-TDESGEQ- 255 (305)
T ss_dssp -TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG-----------GTTTEEEE-ECCCCC-CCC---C-
T ss_pred -ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH-----------HhCCHHHH-HhCCEE-EEeCCEE-
Confidence 68999999999 999999999999 99999999887752 28998876 579999 9999987
Q ss_pred EeccChHHH
Q 006442 336 TYEGNYSQY 344 (645)
Q Consensus 336 ~~~g~~~~~ 344 (645)
.+.|+..++
T Consensus 256 v~~g~~~el 264 (305)
T 2v9p_A 256 PFNITDADW 264 (305)
T ss_dssp CCCCCHHHH
T ss_pred EEeCCHHHH
Confidence 466775443
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.86 E-value=4.9e-21 Score=203.19 Aligned_cols=79 Identities=25% Similarity=0.413 Sum_probs=68.6
Q ss_pred ccccccCCCCChHHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHh
Q 006442 251 DDGDRLVASFSSGWQM------RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 251 ~~~~~~~~~LSGGqkq------RvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~ 321 (645)
...++++.+||||||| |+++|++|+.+|++|||||||+|||+..+..+.++|+ +.+.|||+||||.+ +..
T Consensus 240 ~~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~ 318 (339)
T 3qkt_A 240 EGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKD 318 (339)
T ss_dssp TTEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGG
T ss_pred ccCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHH
Confidence 3457788999999999 6788889999999999999999999999999988774 34789999999966 567
Q ss_pred hcCeEEEEc
Q 006442 322 LCTKIVETE 330 (645)
Q Consensus 322 ~~d~i~~l~ 330 (645)
+||++++++
T Consensus 319 ~~d~~~~l~ 327 (339)
T 3qkt_A 319 AADHVIRIS 327 (339)
T ss_dssp GCSEEEEEE
T ss_pred hCCEEEEEE
Confidence 899999885
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-25 Score=232.85 Aligned_cols=163 Identities=17% Similarity=0.129 Sum_probs=121.2
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCCC
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~ 503 (645)
.|+++||++.|+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|+|...+ .|. ..+ +
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v--------~q~--~~l-f 165 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFA--------NHK--SHF-W 165 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECGG--------GTT--SGG-G
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEEe--------cCc--ccc-c
Confidence 488999999998 78999999999999999999999999999999999998 79985422 221 111 1
Q ss_pred CCCHHH-HHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHH
Q 006442 504 DKTVLE-TVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML 582 (645)
Q Consensus 504 ~~tv~e-~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l 582 (645)
..|+.+ |+.... ... ..+.+.++.+ +. +..+ +..|||||||| |||++++|+||| |++||+.++..+
T Consensus 166 ~~ti~~~ni~~~~-~~~-~~~~~~i~~~-L~-~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i 232 (305)
T 2v9p_A 166 LASLADTRAALVD-DAT-HACWRYFDTY-LR-NALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRY 232 (305)
T ss_dssp GGGGTTCSCEEEE-EEC-HHHHHHHHHT-TT-GGGG--TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGG
T ss_pred cccHHHHhhccCc-ccc-HHHHHHHHHH-hH-ccCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHH
Confidence 123333 333321 111 1344555553 32 2233 67899999999 999999999999 999999998887
Q ss_pred HHHHHhcCceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHH
Q 006442 583 EEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQV 628 (645)
Q Consensus 583 ~~~l~~~~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~ 628 (645)
.. +||++..+ .+||+| +|++|+++. .|+.+++
T Consensus 233 ~~-----------ltH~~~~~-~~aD~i-vl~~G~iv~-~g~~~el 264 (305)
T 2v9p_A 233 LY-----------LHSRVQTF-RFEQPC-TDESGEQPF-NITDADW 264 (305)
T ss_dssp GG-----------GTTTEEEE-ECCCCC-CCC---CCC-CCCHHHH
T ss_pred HH-----------HhCCHHHH-HhCCEE-EEeCCEEEE-eCCHHHH
Confidence 62 29999876 579999 999999984 6888877
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.6e-23 Score=217.40 Aligned_cols=165 Identities=19% Similarity=0.265 Sum_probs=130.7
Q ss_pred eeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------------ceEEEEeccCc-cCCCC
Q 006442 114 KDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------------MKIAFLSQEFE-VSMSR 176 (645)
Q Consensus 114 ~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------------~~i~~v~Q~~~-~~~~~ 176 (645)
..+||++++|++++|+||||||||||++.|+|+++|++|+|.+.+.+ ..|+|++|++. ..+..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 46889999999999999999999999999999999999999987642 14899999987 66777
Q ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCccccccc
Q 006442 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (645)
Q Consensus 177 Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~ 256 (645)
|+++|+..+.. .. .+ ..+++.+|+. +..++.
T Consensus 228 tv~e~l~~~~~----------------~~------------------------~d--------~~lldt~Gl~-~~~~~~ 258 (359)
T 2og2_A 228 VLSKAVKRGKE----------------EG------------------------YD--------VVLCDTSGRL-HTNYSL 258 (359)
T ss_dssp HHHHHHHHHHH----------------TT------------------------CS--------EEEEECCCCS-SCCHHH
T ss_pred hHHHHHHHHHh----------------CC------------------------CH--------HHHHHhcCCC-hhhhhH
Confidence 88888742100 00 00 0345667775 455677
Q ss_pred CCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEec---------CHHHHHhhcCe
Q 006442 257 VASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISH---------DRAFLDQLCTK 325 (645)
Q Consensus 257 ~~~LSGGqkqRvaLAraL~~~p~--iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsH---------d~~~l~~~~d~ 325 (645)
+.+|| |||++|||||+.+|+ +|+|| ||+|||+.... ..+-+..+.|+|++|| .+..+...+..
T Consensus 259 ~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~--~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~p 332 (359)
T 2og2_A 259 MEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA--REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIP 332 (359)
T ss_dssp HHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH--HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCC
T ss_pred HHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH--HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCC
Confidence 88999 999999999999999 99999 99999987653 3333456899999999 46677777889
Q ss_pred EEEEcCce
Q 006442 326 IVETEMGV 333 (645)
Q Consensus 326 i~~l~~G~ 333 (645)
|.++..|.
T Consensus 333 I~~ig~Ge 340 (359)
T 2og2_A 333 VKFIGVGE 340 (359)
T ss_dssp EEEEECSS
T ss_pred EEEEeCCC
Confidence 99998885
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=200.10 Aligned_cols=83 Identities=18% Similarity=0.067 Sum_probs=72.9
Q ss_pred cccCC-CCChHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhc
Q 006442 254 DRLVA-SFSSGWQMRMSLGKILL---------QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323 (645)
Q Consensus 254 ~~~~~-~LSGGqkqRvaLAraL~---------~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~ 323 (645)
++++. .||||||||++||++|+ .+|+||||||||++||+..+..|.+.+++.+.|+|++||. +. .|
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~ 334 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GA 334 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TC
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cC
Confidence 55667 89999999999999999 8999999999999999999999999997766899999995 43 89
Q ss_pred CeEEEEcCceeEEeccCh
Q 006442 324 TKIVETEMGVSRTYEGNY 341 (645)
Q Consensus 324 d~i~~l~~G~~~~~~g~~ 341 (645)
|+++++++|++. ..|+.
T Consensus 335 ~~i~~l~~G~i~-~~g~~ 351 (359)
T 2o5v_A 335 ALTLRAQAGRFT-PVADE 351 (359)
T ss_dssp SEEEEEETTEEE-ECCCT
T ss_pred CEEEEEECCEEE-ecCCH
Confidence 999999999974 44543
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-24 Score=213.47 Aligned_cols=174 Identities=10% Similarity=-0.013 Sum_probs=105.3
Q ss_pred eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcC------CCceEEEEeccCccCCCCCHHHHHH
Q 006442 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK------SNMKIAFLSQEFEVSMSRTVREEFM 183 (645)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~------~~~~i~~v~Q~~~~~~~~Tv~eni~ 183 (645)
.++++| .+|++|++++|+||||||||||+++|+|+++...+.+.+.+ ....++|++|++..++.+|+.+++.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~ 86 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELL 86 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCce
Confidence 347777 79999999999999999999999999999863332221111 1235889999876544444444431
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhh------chhcCCCcccccccC
Q 006442 184 SAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL------MPELGFTADDGDRLV 257 (645)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l------l~~lgl~~~~~~~~~ 257 (645)
.... ...++ .. ...+....++++.+. ++.+|+. ...++.+
T Consensus 87 ~~~~--------------~~~n~----~~---------------~g~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~ 132 (207)
T 1znw_A 87 EWAE--------------IHGGL----HR---------------SGTLAQPVRAAAATGVPVLIEVDLAGAR-AIKKTMP 132 (207)
T ss_dssp EEEE--------------EGGGT----EE---------------EEEEHHHHHHHHHHTCCEEEECCHHHHH-HHHHHCT
T ss_pred eehh--------------hcCch----hh---------------cCCcHHHHHHHHHcCCeEEEEeCHHHHH-HHHHhcC
Confidence 0000 00000 00 000011122233333 3444442 3455666
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCC----CHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcCeEEEE
Q 006442 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHL----DLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVET 329 (645)
Q Consensus 258 ~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~L----D~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d~i~~l 329 (645)
..|| +|+.+|++++|||||+++ |+..+..+.++++ +.|.|+|+||||++++..+||+|+++
T Consensus 133 ~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l 201 (207)
T 1znw_A 133 EAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVG 201 (207)
T ss_dssp TSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC-
T ss_pred CcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHh
Confidence 7777 899999999999999998 6777777776653 35899999999999999999999987
Q ss_pred c
Q 006442 330 E 330 (645)
Q Consensus 330 ~ 330 (645)
.
T Consensus 202 ~ 202 (207)
T 1znw_A 202 T 202 (207)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-20 Score=208.73 Aligned_cols=77 Identities=12% Similarity=0.094 Sum_probs=69.1
Q ss_pred ccCCCC-ChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcCeEEEE
Q 006442 255 RLVASF-SSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVET 329 (645)
Q Consensus 255 ~~~~~L-SGGqkqRvaLAraL~~~p--~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~d~i~~l 329 (645)
+++.+| ||||||||+||+||+.+| ++|||||||+|||+.+...+.++|++ .|.|||+|||+++.+. .||+++++
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence 456788 999999999999999999 99999999999999999999887743 2899999999999886 69999999
Q ss_pred cCc
Q 006442 330 EMG 332 (645)
Q Consensus 330 ~~G 332 (645)
.++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 655
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-22 Score=211.40 Aligned_cols=167 Identities=17% Similarity=0.110 Sum_probs=127.6
Q ss_pred eeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc----------------chhccchhhc-CCC
Q 006442 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP----------------NYFEQNQAEA-LDL 503 (645)
Q Consensus 441 ~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~----------------~~~~q~~~~~-l~~ 503 (645)
..+||++++|++++|+||||||||||++.|+|+++|++|+|.+.|.++.. +++.|+ .. +++
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~--~~~~~~ 168 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAE--GDKAKA 168 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC----CCCH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEec--CCccCH
Confidence 46788899999999999999999999999999999999999998876531 122222 22 445
Q ss_pred CCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCC--eEEeeCCCCCCCHHHHHH
Q 006442 504 DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST--LLVLDEPTNHLDIPSKEM 581 (645)
Q Consensus 504 ~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~--lLlLDEPt~~LD~~s~~~ 581 (645)
..++.+++..+...... ..+++.+|+. +..++.+.+|| |||++||||++.+|+ +|+|| ||+|||+.+.
T Consensus 169 ~~~v~e~l~~~~~~~~d---~~lldt~gl~-~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~-- 238 (302)
T 3b9q_A 169 ATVLSKAVKRGKEEGYD---VVLCDTSGRL-HTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ-- 238 (302)
T ss_dssp HHHHHHHHHHHHHTTCS---EEEECCCCCS-SCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH--
T ss_pred HHHHHHHHHHHHHcCCc---chHHhcCCCC-cchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH--
Confidence 56788888754311100 1245666763 44567788899 999999999999999 99999 9999998865
Q ss_pred HHHHHHhcCceEEEEec---------CHHHHHhhCCEEEEEeCCeEE
Q 006442 582 LEEAISEYKGTVITVSH---------DRYFVKQIVNRVVEVKGSNLQ 619 (645)
Q Consensus 582 l~~~l~~~~~tvi~vsH---------d~~~i~~~~d~v~~l~~g~i~ 619 (645)
+.++-++.+.|+|++|| .++.+..+...|.++..|+..
T Consensus 239 ~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 239 AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 33333356789999999 677787888999999998653
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.7e-24 Score=224.22 Aligned_cols=180 Identities=8% Similarity=0.064 Sum_probs=126.1
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEE-----------------------EECCcEEEEECCCCccHHHHHHHHHcCCCCCccE
Q 006442 97 GVKLENISKSYKGVTVLKDVTWE-----------------------VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~-----------------------i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~ 153 (645)
.|+++||++.|. ++++++++. +++|+++||+||||||||||+++|+|+++|..|.
T Consensus 43 ~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~ 120 (312)
T 3aez_A 43 QIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH 120 (312)
T ss_dssp CCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC
T ss_pred eEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCCC
Confidence 589999999994 566666664 8999999999999999999999999999998664
Q ss_pred EEEcCCCceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChh
Q 006442 154 VIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD 233 (645)
Q Consensus 154 I~~~~~~~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (645)
..++|++|++.+++. |+.+|+..... .... ..
T Consensus 121 -------~~v~~v~qd~~~~~~-t~~e~~~~~~~----------------~g~~------------------------~~ 152 (312)
T 3aez_A 121 -------PRVDLVTTDGFLYPN-AELQRRNLMHR----------------KGFP------------------------ES 152 (312)
T ss_dssp -------CCEEEEEGGGGBCCH-HHHHHTTCTTC----------------TTSG------------------------GG
T ss_pred -------CeEEEEecCccCCcc-cHHHHHHHHHh----------------cCCC------------------------hH
Confidence 358999999877666 88888631000 0000 00
Q ss_pred cHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEe
Q 006442 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIIS 313 (645)
Q Consensus 234 ~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivs 313 (645)
...+.+.+++..++ . ...+..+.+|||||+||+++|+|++.+|+|||||||+..+|+.. ..+.+ ..+ .+|+|+
T Consensus 153 ~d~~~~~~~L~~l~-~-~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-~~l~~---~~D-~~I~V~ 225 (312)
T 3aez_A 153 YNRRALMRFVTSVK-S-GSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-LMVSD---LFD-FSLYVD 225 (312)
T ss_dssp BCHHHHHHHHHHHH-T-TCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-CCGGG---GCS-EEEEEE
T ss_pred HHHHHHHHHHHHhC-C-CcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-HHHHH---hcC-cEEEEE
Confidence 00122334444444 2 23346678999999999999999999999999999999998622 11111 123 357778
Q ss_pred cCHHHH-HhhcCeEEEEcCce
Q 006442 314 HDRAFL-DQLCTKIVETEMGV 333 (645)
Q Consensus 314 Hd~~~l-~~~~d~i~~l~~G~ 333 (645)
|+.+.. ...+.|.+.+.++.
T Consensus 226 a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 226 ARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp ECHHHHHHHHHHHHHHHTTTG
T ss_pred CCHHHHHHHHHHHHHHHHhcc
Confidence 887654 34455555555543
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.83 E-value=9.2e-23 Score=222.92 Aligned_cols=172 Identities=13% Similarity=0.156 Sum_probs=133.4
Q ss_pred ccEEEEeEEEEeC-CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------------
Q 006442 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------- 160 (645)
Q Consensus 96 ~~i~i~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-------------- 160 (645)
+.++++++++.|+ +.++|+++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|.+
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 4689999999997 67799999 9999999999999999999999999999999999999988752
Q ss_pred ----ceEEEEecc-CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcH
Q 006442 161 ----MKIAFLSQE-FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (645)
Q Consensus 161 ----~~i~~v~Q~-~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (645)
..|+|++|. ....+..|+.+|+.... + + +. . ..
T Consensus 209 ~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a--e---------~---~~------------------------~-~~--- 246 (438)
T 2dpy_A 209 DGRARSVVIAAPADVSPLLRMQGAAYATRIA--E---------D---FR------------------------D-RG--- 246 (438)
T ss_dssp HHHHTEEEEEECTTSCHHHHHHHHHHHHHHH--H---------H---HH------------------------T-TT---
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHH--H---------H---HH------------------------h-CC---
Confidence 258999995 33334556666654210 0 0 00 0 00
Q ss_pred HHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccC-------CC-
Q 006442 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ-------DV- 307 (645)
Q Consensus 236 ~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~-------g~- 307 (645)
..++ ...+. +..||+|| |||+|| +.+|++ |+|||+.....+.+++.+. |.
T Consensus 247 ----~~v~-------~~ld~-l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~Gsi 304 (438)
T 2dpy_A 247 ----QHVL-------LIMDS-LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSI 304 (438)
T ss_dssp ----CEEE-------EEEEC-HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEE
T ss_pred ----CCHH-------HHHHh-HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcc
Confidence 0011 11122 57899999 999999 889988 9999999999999988532 43
Q ss_pred ----eEEEEecCHHHHHhhcCeEEEEcCcee
Q 006442 308 ----PMVIISHDRAFLDQLCTKIVETEMGVS 334 (645)
Q Consensus 308 ----tvIivsHd~~~l~~~~d~i~~l~~G~~ 334 (645)
||+++|||++ ..+||+++.+.+|++
T Consensus 305 T~~~tVlv~tHdl~--~~iad~v~~l~dG~I 333 (438)
T 2dpy_A 305 TAFYTVLTEGDDQQ--DPIADSARAILDGHI 333 (438)
T ss_dssp EEEEEEECSSSCSC--CHHHHHHHHHSSEEE
T ss_pred cceeEEEEeCCCcc--chhhceEEEEeCcEE
Confidence 8999999998 678999999999876
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.6e-24 Score=211.78 Aligned_cols=168 Identities=13% Similarity=0.062 Sum_probs=99.1
Q ss_pred eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----------ceEEEEeccCccCCCCCH-
Q 006442 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFLSQEFEVSMSRTV- 178 (645)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-----------~~i~~v~Q~~~~~~~~Tv- 178 (645)
.-|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ +.+ ..++|++|++..++..+.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 3689999999999999999999999999999999998 5 98887 321 246778877543211100
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCC
Q 006442 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258 (645)
Q Consensus 179 ~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~ 258 (645)
.++ ++... +... .+. .....+.+++....+ ...+ .
T Consensus 87 ~~~---------------------l~~~~----~~~~-------------~~g--~~~~~i~~~l~~~~~--~il~---~ 121 (218)
T 1z6g_A 87 EDF---------------------LEYDN----YANN-------------FYG--TLKSEYDKAKEQNKI--CLFE---M 121 (218)
T ss_dssp TCE---------------------EEEEE----ETTE-------------EEE--EEHHHHHHHHHTTCE--EEEE---E
T ss_pred cch---------------------hhhhh----cccc-------------cCC--CcHHHHHHHHhCCCc--EEEE---e
Confidence 000 00000 0000 000 001123333333221 1122 6
Q ss_pred CCChHHHHHHHH-----HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----------CCCeEEEEecCHHHHHhhc
Q 006442 259 SFSSGWQMRMSL-----GKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----------QDVPMVIISHDRAFLDQLC 323 (645)
Q Consensus 259 ~LSGGqkqRvaL-----AraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----------~g~tvIivsHd~~~l~~~~ 323 (645)
+|||||+||++| |++|+.+|++++|||||+++|..+.+.+.+.|.+ ...+.|+++||++.+...+
T Consensus 122 ~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~ 201 (218)
T 1z6g_A 122 NINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQL 201 (218)
T ss_dssp CHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHH
T ss_pred cHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHH
Confidence 799999999999 8999999999999999999999888777765532 2345566666666555555
Q ss_pred CeEE
Q 006442 324 TKIV 327 (645)
Q Consensus 324 d~i~ 327 (645)
++++
T Consensus 202 ~~ii 205 (218)
T 1z6g_A 202 KNYL 205 (218)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-22 Score=212.18 Aligned_cols=139 Identities=14% Similarity=0.153 Sum_probs=106.1
Q ss_pred EEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCCCCCC
Q 006442 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKT 506 (645)
Q Consensus 427 ~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~~t 506 (645)
+++++| | +++++++++.|++|+.++|+||||||||||+++|+|+++|++|.|.++|.+... .... ..
T Consensus 151 ~~~v~f-y--~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~--~~~~-~~------- 217 (330)
T 2pt7_A 151 YNLLDN-K--EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIV--FKHH-KN------- 217 (330)
T ss_dssp TTTSTT-H--HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCC--CSSC-SS-------
T ss_pred cCchhh-H--HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccc--cccc-hh-------
Confidence 445555 5 458999999999999999999999999999999999999999999998753110 0000 00
Q ss_pred HHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHH
Q 006442 507 VLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI 586 (645)
Q Consensus 507 v~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l 586 (645)
.+++ .. . |||+||++||+||.++|++|||||||+ .+. .++|
T Consensus 218 ----------------------~i~~----~~----g--gg~~~r~~la~aL~~~p~ilildE~~~---~e~----~~~l 258 (330)
T 2pt7_A 218 ----------------------YTQL----FF----G--GNITSADCLKSCLRMRPDRIILGELRS---SEA----YDFY 258 (330)
T ss_dssp ----------------------EEEE----EC----B--TTBCHHHHHHHHTTSCCSEEEECCCCS---THH----HHHH
T ss_pred ----------------------EEEE----Ee----C--CChhHHHHHHHHhhhCCCEEEEcCCCh---HHH----HHHH
Confidence 0000 00 0 899999999999999999999999998 232 3344
Q ss_pred Hhc--Cc-eEEEEecCHHHHHhhCCEEEEEeCCeE
Q 006442 587 SEY--KG-TVITVSHDRYFVKQIVNRVVEVKGSNL 618 (645)
Q Consensus 587 ~~~--~~-tvi~vsHd~~~i~~~~d~v~~l~~g~i 618 (645)
+.. ++ |+|+++|+.+ +...|||+++|.+|..
T Consensus 259 ~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 259 NVLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSNS 292 (330)
T ss_dssp HHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTSG
T ss_pred HHHhcCCCEEEEEEcccH-HHHHhhhheehhcCCc
Confidence 332 34 7999999998 6677999999988764
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-19 Score=191.73 Aligned_cols=81 Identities=35% Similarity=0.554 Sum_probs=70.3
Q ss_pred hccCcCcCCHhHHH------HHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhC
Q 006442 537 LDRKVSLLSGGEKA------RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIV 607 (645)
Q Consensus 537 ~~~~~~~LSgGqkq------rv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~ 607 (645)
.++++..||||||| |+++|++++.+|++|||||||+|||+.++..+.++|.++ +.|||+||||.+ +..+|
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~~ 320 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA 320 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHhC
Confidence 46788999999999 678888999999999999999999999999999999865 349999999965 56789
Q ss_pred CEEEEEe--CCeE
Q 006442 608 NRVVEVK--GSNL 618 (645)
Q Consensus 608 d~v~~l~--~g~i 618 (645)
|++++|+ +|..
T Consensus 321 d~~~~l~~~~g~s 333 (339)
T 3qkt_A 321 DHVIRISLENGSS 333 (339)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEecCCcc
Confidence 9999985 5543
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-21 Score=207.51 Aligned_cols=166 Identities=17% Similarity=0.112 Sum_probs=126.6
Q ss_pred eeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc----------------chhccchhhc-CCCC
Q 006442 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP----------------NYFEQNQAEA-LDLD 504 (645)
Q Consensus 442 ~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~----------------~~~~q~~~~~-l~~~ 504 (645)
.+||++++|++++|+||||||||||++.|+|+++|++|+|.+.|.++.. +++.|+ .. +++.
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~--~~~~~p~ 226 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAE--GDKAKAA 226 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCS--SSSCCHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEec--ccccChh
Confidence 4678899999999999999999999999999999999999998876531 122222 22 3445
Q ss_pred CCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCC--eEEeeCCCCCCCHHHHHHH
Q 006442 505 KTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST--LLVLDEPTNHLDIPSKEML 582 (645)
Q Consensus 505 ~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~--lLlLDEPt~~LD~~s~~~l 582 (645)
.++.+++..+...... ..+++.+|+. +..++.+.+|| |||++||||++.+|+ +|+|| ||+|||+.++.
T Consensus 227 ~tv~e~l~~~~~~~~d---~~lldt~Gl~-~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~-- 296 (359)
T 2og2_A 227 TVLSKAVKRGKEEGYD---VVLCDTSGRL-HTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA-- 296 (359)
T ss_dssp HHHHHHHHHHHHTTCS---EEEEECCCCS-SCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH--
T ss_pred hhHHHHHHHHHhCCCH---HHHHHhcCCC-hhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH--
Confidence 5788888754321100 1245666763 44567788899 999999999999999 99999 99999988653
Q ss_pred HHHHHhcCceEEEEec---------CHHHHHhhCCEEEEEeCCeEE
Q 006442 583 EEAISEYKGTVITVSH---------DRYFVKQIVNRVVEVKGSNLQ 619 (645)
Q Consensus 583 ~~~l~~~~~tvi~vsH---------d~~~i~~~~d~v~~l~~g~i~ 619 (645)
.++-++.+.|+|++|| .++.+..++..|.++..|+..
T Consensus 297 ~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~ 342 (359)
T 2og2_A 297 REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 342 (359)
T ss_dssp HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCCh
Confidence 3333345789999999 577777888999999988754
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.1e-21 Score=228.76 Aligned_cols=164 Identities=15% Similarity=0.135 Sum_probs=117.9
Q ss_pred CccEEEEe-----EEEEe-CCeeeeeeeeEEEEC-------CcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc
Q 006442 95 SSGVKLEN-----ISKSY-KGVTVLKDVTWEVKK-------GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161 (645)
Q Consensus 95 ~~~i~i~n-----ls~~y-~~~~vL~~vsl~i~~-------Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~ 161 (645)
.+.|+++| +++.| ++..+++|++|++++ |++++|+||||||||||||+| |++.+. .
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~----------a 816 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM----------A 816 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH----------H
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH----------h
Confidence 34699999 99999 667899999999987 999999999999999999999 988641 2
Q ss_pred eEE-EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHH
Q 006442 162 KIA-FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (645)
Q Consensus 162 ~i~-~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 240 (645)
++| ||||++. ..||.++|+
T Consensus 817 qiG~~Vpq~~~---~l~v~d~I~--------------------------------------------------------- 836 (1022)
T 2o8b_B 817 QMGCYVPAEVC---RLTPIDRVF--------------------------------------------------------- 836 (1022)
T ss_dssp TTTCCEESSEE---EECCCSBEE---------------------------------------------------------
T ss_pred heeEEeccCcC---CCCHHHHHH---------------------------------------------------------
Confidence 355 8999762 345544432
Q ss_pred hhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH-HHHH---HHHcc-CCCeEEEEecC
Q 006442 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTI-EWLE---GYLGK-QDVPMVIISHD 315 (645)
Q Consensus 241 ~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~-~~l~---~~L~~-~g~tvIivsHd 315 (645)
..+|+. +...+...++|+++++ +++|++++.+|+++||||||+|+|+... ..+. +.|.+ .|+++|++||+
T Consensus 837 ---~rig~~-d~~~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~ 911 (1022)
T 2o8b_B 837 ---TRLGAS-DRIMSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHY 911 (1022)
T ss_dssp ---EECC----------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCC
T ss_pred ---HHcCCH-HHHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCC
Confidence 112221 1122234677887775 9999999999999999999999998763 3333 33444 48999999999
Q ss_pred HHHHHhhcCeEEEEcCceeE
Q 006442 316 RAFLDQLCTKIVETEMGVSR 335 (645)
Q Consensus 316 ~~~l~~~~d~i~~l~~G~~~ 335 (645)
.+++..+||++.++ +|++.
T Consensus 912 ~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 912 HSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp HHHHHHTSSCSSEE-EEEEE
T ss_pred HHHHHHhCCcceee-cCeEE
Confidence 99999999998876 45553
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-22 Score=200.53 Aligned_cols=162 Identities=10% Similarity=-0.044 Sum_probs=98.3
Q ss_pred eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceec------ccchhccchhhcCCCCCCHHHH
Q 006442 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------LPNYFEQNQAEALDLDKTVLET 510 (645)
Q Consensus 437 ~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~------~~~~~~q~~~~~l~~~~tv~e~ 510 (645)
.++++| .+|++||+++|+||||||||||+++|+|+++...+.+.+.+.+. ..+|++|+.. .+..+++.++
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~~~~~~ 84 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPT--RFQQLIDQGE 84 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHH--HHHHHHHTTC
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHH--HHHHHHhcCC
Confidence 457777 79999999999999999999999999999864332221111110 1234444321 1112222222
Q ss_pred HHhh----h--c--cccHH----HHHHH------HhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCC
Q 006442 511 VAEA----A--E--DWRID----DIKGL------LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572 (645)
Q Consensus 511 v~~~----~--~--~~~~~----~~~~~------L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~ 572 (645)
+... . . ..... .+.+. ++.+|+ ....++.+..|| +|+.+|++++|||||+
T Consensus 85 l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~lS-----------~l~~~p~~~~LDep~~ 152 (207)
T 1znw_A 85 LLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGA-RAIKKTMPEAVT-----------VFLAPPSWQDLQARLI 152 (207)
T ss_dssp EEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHH-HHHHHHCTTSEE-----------EEEECSCHHHHHHHHH
T ss_pred ceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHH-HHHHHhcCCcEE-----------EEEECCCHHHHHHHHH
Confidence 2100 0 0 01111 22222 444444 345566777777 8999999999999999
Q ss_pred CC----CHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEe
Q 006442 573 HL----DIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVK 614 (645)
Q Consensus 573 ~L----D~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~ 614 (645)
++ |+..+..+.+++++. +.|+|+||||++++..+||||++|.
T Consensus 153 ~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 153 GRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred hcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 98 677888888887654 4599999999999999999999984
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.80 E-value=7.3e-22 Score=208.54 Aligned_cols=141 Identities=12% Similarity=0.138 Sum_probs=105.9
Q ss_pred EEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCCCCCHH
Q 006442 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVR 179 (645)
Q Consensus 100 i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~Tv~ 179 (645)
+++++| | .++++++||.|++|++++|+||||||||||+++|+|+++|++|.|.+++... ..+ ... +
T Consensus 151 ~~~v~f-y--~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e--------~~~-~~~--~ 216 (330)
T 2pt7_A 151 YNLLDN-K--EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE--------IVF-KHH--K 216 (330)
T ss_dssp TTTSTT-H--HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC--------CCC-SSC--S
T ss_pred cCchhh-H--HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec--------ccc-ccc--h
Confidence 334444 5 4589999999999999999999999999999999999999999999876421 000 000 0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCC
Q 006442 180 EEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259 (645)
Q Consensus 180 eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~ 259 (645)
+ .+++ +..
T Consensus 217 -~---------------------------------------------------------------~i~~--------~~g 224 (330)
T 2pt7_A 217 -N---------------------------------------------------------------YTQL--------FFG 224 (330)
T ss_dssp -S---------------------------------------------------------------EEEE--------ECB
T ss_pred -h---------------------------------------------------------------EEEE--------EeC
Confidence 0 0000 001
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcCce
Q 006442 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (645)
Q Consensus 260 LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~i~~l~~G~ 333 (645)
|||+||++||+||..+|++|||||||+ .+..+.| ..+...+.|+|+++|+.+ +...|||++.+.+|.
T Consensus 225 --gg~~~r~~la~aL~~~p~ilildE~~~---~e~~~~l-~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 225 --GNITSADCLKSCLRMRPDRIILGELRS---SEAYDFY-NVLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSN 291 (330)
T ss_dssp --TTBCHHHHHHHHTTSCCSEEEECCCCS---THHHHHH-HHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTS
T ss_pred --CChhHHHHHHHHhhhCCCEEEEcCCCh---HHHHHHH-HHHhcCCCEEEEEEcccH-HHHHhhhheehhcCC
Confidence 899999999999999999999999998 2333333 333333458999999999 677899999998775
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.3e-19 Score=189.70 Aligned_cols=85 Identities=18% Similarity=0.149 Sum_probs=75.6
Q ss_pred ccCcC-cCCHhHHHHHHHHHHHc---------cCCCeEEeeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhC
Q 006442 538 DRKVS-LLSGGEKARLAFCKFMV---------KPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIV 607 (645)
Q Consensus 538 ~~~~~-~LSgGqkqrv~lAral~---------~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~~tvi~vsHd~~~i~~~~ 607 (645)
++++. .||||||||++||++|+ .+|+||||||||++||+..+..+.+.|.+...|+|++||+ +. .|
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~ 334 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GA 334 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TC
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cC
Confidence 45666 79999999999999999 8999999999999999999999999999877899999995 43 79
Q ss_pred CEEEEEeCCeEEeeCCChhH
Q 006442 608 NRVVEVKGSNLQDYAGDYNQ 627 (645)
Q Consensus 608 d~v~~l~~g~i~~~~~~~~~ 627 (645)
|++++|++|++.. .|+.++
T Consensus 335 ~~i~~l~~G~i~~-~g~~~~ 353 (359)
T 2o5v_A 335 ALTLRAQAGRFTP-VADEEM 353 (359)
T ss_dssp SEEEEEETTEEEE-CCCTTT
T ss_pred CEEEEEECCEEEe-cCCHHH
Confidence 9999999999985 465554
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.7e-22 Score=204.18 Aligned_cols=143 Identities=15% Similarity=0.152 Sum_probs=90.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-------ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHH
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLE 197 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-------~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~ 197 (645)
.++|+||||||||||+++|+|+..|++|+|.++|.+ ..++|++|++.+.+.+||.||+..+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~--------- 74 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQI--------- 74 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCS---------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhc---------
Confidence 489999999999999999999999999999887642 3699999999887888998886421100
Q ss_pred HHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccC
Q 006442 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277 (645)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~ 277 (645)
.. ....+.+ .+.+. ....++.+.+||||||||+++|||++.
T Consensus 75 ------~~-~~~~~~i--------------------------~~~~~-----~~~~~~~~~~LS~G~~qrv~iaRal~~- 115 (270)
T 3sop_A 75 ------NN-ENCWEPI--------------------------EKYIN-----EQYEKFLKEEVNIARKKRIPDTRVHCC- 115 (270)
T ss_dssp ------BC-TTCSHHH--------------------------HHHHH-----HHHHHHHHHHSCTTCCSSCCCCSCCEE-
T ss_pred ------cc-HHHHHHH--------------------------HHHHH-----HHHHhhhHHhcCcccchhhhhheeeee-
Confidence 00 0000000 00000 012233457899999999999999886
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHH
Q 006442 278 PDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 319 (645)
Q Consensus 278 p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l 319 (645)
+++||||+.+||+...+.+.. |++. .+||+|.|..+.+
T Consensus 116 --lllldep~~gL~~lD~~~l~~-L~~~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 116 --LYFISPTGHSLRPLDLEFMKH-LSKV-VNIIPVIAKADTM 153 (270)
T ss_dssp --EEEECCCSSSCCHHHHHHHHH-HHTT-SEEEEEETTGGGS
T ss_pred --eEEEecCCCcCCHHHHHHHHH-HHhc-CcEEEEEeccccC
Confidence 999999999999988665554 4444 8999998875443
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-22 Score=201.45 Aligned_cols=157 Identities=13% Similarity=0.153 Sum_probs=100.1
Q ss_pred eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----------cchhccchhhcCCCCCC
Q 006442 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PNYFEQNQAEALDLDKT 506 (645)
Q Consensus 438 ~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~~~~~q~~~~~l~~~~t 506 (645)
.-|+++||+|++|++++|+||||||||||+++|+|++ | |.|.+ |.++. .+|++|+..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~-------- 78 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKT-------- 78 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHH--------
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHH--------
Confidence 4589999999999999999999999999999999998 5 88988 54331 122232211
Q ss_pred HHHHHHh----------hh--ccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHH-----HHHHccCCCeEEeeC
Q 006442 507 VLETVAE----------AA--EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF-----CKFMVKPSTLLVLDE 569 (645)
Q Consensus 507 v~e~v~~----------~~--~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~l-----Aral~~~p~lLlLDE 569 (645)
.+..... .. .......+.++++.... ...+ .+||||||||++| |++++.+|++++|||
T Consensus 79 ~~~~~~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~--~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde 153 (218)
T 1z6g_A 79 IFEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKI--CLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLS 153 (218)
T ss_dssp HHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCE--EEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHH
T ss_pred HHHHhhhccchhhhhhcccccCCCcHHHHHHHHhCCCc--EEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHH
Confidence 1111110 00 01123345666665432 1222 4689999999999 899999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----------CceEEEEecCHHHHHhhCCEEE
Q 006442 570 PTNHLDIPSKEMLEEAISEY----------KGTVITVSHDRYFVKQIVNRVV 611 (645)
Q Consensus 570 Pt~~LD~~s~~~l~~~l~~~----------~~tvi~vsHd~~~i~~~~d~v~ 611 (645)
||+++|.++...+.+.+... ..+.|+|+||++.+...+++++
T Consensus 154 ~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii 205 (218)
T 1z6g_A 154 RLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYL 205 (218)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHH
Confidence 99999999998888877643 2356667777766666555544
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.4e-22 Score=216.25 Aligned_cols=175 Identities=16% Similarity=0.139 Sum_probs=130.5
Q ss_pred cEEEEEeeeeeeC-CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECce---eccc--------
Q 006442 423 SVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH---NVLP-------- 490 (645)
Q Consensus 423 ~~i~~~~v~~~y~-~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~---~~~~-------- 490 (645)
++++++++++.|+ +..+++++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|. ++..
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 4588999999997 67899999 999999999999999999999999999999999999999887 3311
Q ss_pred -------chhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCC
Q 006442 491 -------NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (645)
Q Consensus 491 -------~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 563 (645)
.++.|.. .......++.+++...... ....+-.....-..+..||+|| |||+|| +.+|+
T Consensus 209 ~~l~r~i~~v~q~~-~~~~~~~~v~~~~~~~ae~---------~~~~~~~v~~~ld~l~~lS~g~-qrvslA---l~~p~ 274 (438)
T 2dpy_A 209 DGRARSVVIAAPAD-VSPLLRMQGAAYATRIAED---------FRDRGQHVLLIMDSLTRYAMAQ-REIALA---IGEPP 274 (438)
T ss_dssp HHHHTEEEEEECTT-SCHHHHHHHHHHHHHHHHH---------HHTTTCEEEEEEECHHHHHHHH-HHHHHH---TTCCC
T ss_pred cccCceEEEEECCC-CCHHHHHHHHHHHHHHHHH---------HHhCCCCHHHHHHhHHHHHHHH-HHHHHH---hCCCc
Confidence 1222211 1112234555555433211 1100100001112367899999 999999 88888
Q ss_pred eEEeeCCCCCCCHHHHHHHHHHHHhcC------c------eEEEEecCHHHHHhhCCEEEEEeCCeEEe
Q 006442 564 LLVLDEPTNHLDIPSKEMLEEAISEYK------G------TVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (645)
Q Consensus 564 lLlLDEPt~~LD~~s~~~l~~~l~~~~------~------tvi~vsHd~~~i~~~~d~v~~l~~g~i~~ 620 (645)
+ |+|||+.+...+.+++.+.. + ||+++|||++ ..+||++++|.+|+++.
T Consensus 275 ~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl 335 (438)
T 2dpy_A 275 A------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVL 335 (438)
T ss_dssp C------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEE
T ss_pred c------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEE
Confidence 8 99999999999999998641 3 8999999998 66799999999999874
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-20 Score=211.79 Aligned_cols=169 Identities=11% Similarity=0.064 Sum_probs=122.6
Q ss_pred cEEEEeEEEEeCC-eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCCC
Q 006442 97 GVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (645)
Q Consensus 97 ~i~i~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~ 175 (645)
.++++++++.|++ ..+| +..|++|++++|+|+||||||||+++++|..+|. |+ .-+.|++|++..
T Consensus 257 ~~~~~~l~~g~~~ld~vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-------~vi~~~~ee~~~--- 322 (525)
T 1tf7_A 257 RSSNVRVSSGVVRLDEMC---GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-------RAILFAYEESRA--- 322 (525)
T ss_dssp CCCCCEECCSCHHHHHHT---TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-------CEEEEESSSCHH---
T ss_pred ccccceeecChHHHHHHh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-------CEEEEEEeCCHH---
Confidence 3566777766543 1233 3489999999999999999999999999998874 53 114566676420
Q ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccc
Q 006442 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (645)
Q Consensus 176 ~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~ 255 (645)
++.++.. ... + ..+ + +...|+. ...+.
T Consensus 323 -~l~~~~~---------------------~~g----------------------~---~~~----~-~~~~g~~-~~~~~ 349 (525)
T 1tf7_A 323 -QLLRNAY---------------------SWG----------------------M---DFE----E-MERQNLL-KIVCA 349 (525)
T ss_dssp -HHHHHHH---------------------TTS----------------------C---CHH----H-HHHTTSE-EECCC
T ss_pred -HHHHHHH---------------------HcC----------------------C---CHH----H-HHhCCCE-EEEEe
Confidence 1111100 000 0 001 1 1122332 34566
Q ss_pred cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH-----HHHHHHHHH---ccCCCeEEEEecCH----------H
Q 006442 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLD-----TIEWLEGYL---GKQDVPMVIISHDR----------A 317 (645)
Q Consensus 256 ~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~-----~~~~l~~~L---~~~g~tvIivsHd~----------~ 317 (645)
.+.+|||||+||+++|+++..+|++||+| ||++||.. .++.+.+++ ++.|+|||++||+. .
T Consensus 350 ~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~ 428 (525)
T 1tf7_A 350 YPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDS 428 (525)
T ss_dssp CGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSS
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCc
Confidence 78999999999999999999999999999 99999998 887776654 56799999999999 7
Q ss_pred HHHhhcCeEEEEcCce
Q 006442 318 FLDQLCTKIVETEMGV 333 (645)
Q Consensus 318 ~l~~~~d~i~~l~~G~ 333 (645)
.+..+||+|+++++|.
T Consensus 429 ~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 429 HISTITDTIILLQYVE 444 (525)
T ss_dssp CCTTTCSEEEEEEEEE
T ss_pred ccceeeeEEEEEEEEE
Confidence 8889999999998875
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-22 Score=211.04 Aligned_cols=175 Identities=13% Similarity=0.063 Sum_probs=126.8
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEE-----------------------EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCee
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLT-----------------------IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~-----------------------i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G 479 (645)
..|++++|++.|+ ++++++++. +++|+++||+||||||||||+++|+|+++|..|
T Consensus 42 ~~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G 119 (312)
T 3aez_A 42 EQIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDH 119 (312)
T ss_dssp CCCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTT
T ss_pred CeEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCC
Confidence 3589999999995 566666654 899999999999999999999999999998766
Q ss_pred EEEECceecccchhccchhhcCCCCCCHHHHHHhhh-----ccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHH
Q 006442 480 EVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAA-----EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF 554 (645)
Q Consensus 480 ~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~-----~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~l 554 (645)
. ...+++.|+ ..+.+. |+.+|+.... .....+.+.+.|+.++ . ...+..+..|||||+||+++
T Consensus 120 ~-------~~v~~v~qd--~~~~~~-t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~-~~~~~~~~~lS~G~~qRv~~ 187 (312)
T 3aez_A 120 H-------PRVDLVTTD--GFLYPN-AELQRRNLMHRKGFPESYNRRALMRFVTSVK-S-GSDYACAPVYSHLHYDIIPG 187 (312)
T ss_dssp C-------CCEEEEEGG--GGBCCH-HHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-T-TCSCEEEEEEETTTTEEEEE
T ss_pred C-------CeEEEEecC--ccCCcc-cHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-C-CcccCCcccCChhhhhhhhh
Confidence 3 123445543 233344 7888765321 1223455677777776 2 33456778999999999999
Q ss_pred HHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHH-hhCCEEEEEeCC
Q 006442 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVK-QIVNRVVEVKGS 616 (645)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~~tvi~vsHd~~~i~-~~~d~v~~l~~g 616 (645)
|++++.+|+|||||||+..+|... ..+.++-..+|+|+|+.+.+. .+.+|.+.+.++
T Consensus 188 a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~ 245 (312)
T 3aez_A 188 AEQVVRHPDILILEGLNVLQTGPT-----LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTT 245 (312)
T ss_dssp EEEEECSCSEEEEECTTTTCCCSS-----CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTT
T ss_pred HHHhccCCCEEEECCccccCCcch-----HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998622 123343346788899987753 345666555443
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.1e-20 Score=220.20 Aligned_cols=165 Identities=18% Similarity=0.169 Sum_probs=115.3
Q ss_pred CCcEEEEEe-----eeeee-CCeeceeeeeEEEec-------CcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECcee
Q 006442 421 GRSVVTIKN-----LEFGY-EDRLLFNRANLTIER-------GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (645)
Q Consensus 421 ~~~~i~~~~-----v~~~y-~~~~~l~~vsl~i~~-------Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~ 487 (645)
..++|+++| |++.| +++.++++++|++++ |++++|+||||||||||||+| |++.+..
T Consensus 747 ~~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~a--------- 816 (1022)
T 2o8b_B 747 TPPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVMA--------- 816 (1022)
T ss_dssp SCCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHHH---------
T ss_pred CCceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHHh---------
Confidence 345799999 99999 667899999999987 999999999999999999999 9876421
Q ss_pred cccc-hhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEE
Q 006442 488 VLPN-YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (645)
Q Consensus 488 ~~~~-~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 566 (645)
..+ |++|... ..++.+++ +.++|.. +......+.+|+++++ +++|++++.+|+++|
T Consensus 817 -qiG~~Vpq~~~-----~l~v~d~I---------------~~rig~~-d~~~~~~stf~~em~~-~a~al~la~~~sLlL 873 (1022)
T 2o8b_B 817 -QMGCYVPAEVC-----RLTPIDRV---------------FTRLGAS-DRIMSGESTFFVELSE-TASILMHATAHSLVL 873 (1022)
T ss_dssp -TTTCCEESSEE-----EECCCSBE---------------EEECC----------CHHHHHHHH-HHHHHHHCCTTCEEE
T ss_pred -heeEEeccCcC-----CCCHHHHH---------------HHHcCCH-HHHhhchhhhHHHHHH-HHHHHHhCCCCcEEE
Confidence 122 4554321 12232222 1233442 3334556678888775 999999999999999
Q ss_pred eeCCCCCCCHHHH-HHHHHHHHh---c-CceEEEEecCHHHHHhhCCEEEEEeCCeEE
Q 006442 567 LDEPTNHLDIPSK-EMLEEAISE---Y-KGTVITVSHDRYFVKQIVNRVVEVKGSNLQ 619 (645)
Q Consensus 567 LDEPt~~LD~~s~-~~l~~~l~~---~-~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~ 619 (645)
|||||+|+|+... ..+..+|+. . +.++|++|||.+++..++|++++++ |++.
T Consensus 874 LDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~~-g~~~ 930 (1022)
T 2o8b_B 874 VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRL-GHMA 930 (1022)
T ss_dssp EECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEEE-EEEE
T ss_pred EECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceeec-CeEE
Confidence 9999999998874 434555543 2 5699999999999999999988874 6665
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=6.2e-21 Score=202.43 Aligned_cols=173 Identities=16% Similarity=0.220 Sum_probs=124.2
Q ss_pred ccEEEEeEEEEeC-CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------------
Q 006442 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------- 160 (645)
Q Consensus 96 ~~i~i~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-------------- 160 (645)
+.++++++++.|+ +.++++++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|.+
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~ 122 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQS 122 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHH
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhh
Confidence 3588899999997 67899999 9999999999999999999999999999999999988876542
Q ss_pred ---ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHH
Q 006442 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (645)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (645)
..+.+++|.. .+..+.+...+ ..+ .
T Consensus 123 ~~~~~v~~~~~~~-----~~~~~r~~~~~--------------~~~------------------------------~--- 150 (347)
T 2obl_A 123 TLSKCVLVVTTSD-----RPALERMKAAF--------------TAT------------------------------T--- 150 (347)
T ss_dssp HHTTEEEEEECTT-----SCHHHHHHHHH--------------HHH------------------------------H---
T ss_pred hhhceEEEEECCC-----CCHHHHHHHHH--------------HHH------------------------------H---
Confidence 1244554431 11111111000 000 0
Q ss_pred HHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc-----CCC-----
Q 006442 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK-----QDV----- 307 (645)
Q Consensus 238 ~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~-----~g~----- 307 (645)
+.+.+...|-.-...-..+..||+|| |||++| +.+|++ |+|||+.....+.+++.+ .|.
T Consensus 151 -~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~ 219 (347)
T 2obl_A 151 -IAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIY 219 (347)
T ss_dssp -HHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEE
T ss_pred -HHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEE
Confidence 00000000100000113478999999 899999 688887 999999999999998853 355
Q ss_pred eEEEEecCHHHHHhhcCeEEEEcCcee
Q 006442 308 PMVIISHDRAFLDQLCTKIVETEMGVS 334 (645)
Q Consensus 308 tvIivsHd~~~l~~~~d~i~~l~~G~~ 334 (645)
||+++|||++ ..+||+++.+.+|++
T Consensus 220 tVl~~thdl~--~~i~d~v~~i~dG~I 244 (347)
T 2obl_A 220 TVLLESDNVN--DPIGDEVRSILDGHI 244 (347)
T ss_dssp EEECCSSCCC--CHHHHHHHHHCSEEE
T ss_pred EEEEeCCCCC--ChhhhheEEeeCcEE
Confidence 8999999999 678999999999986
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-20 Score=198.06 Aligned_cols=182 Identities=14% Similarity=0.102 Sum_probs=126.9
Q ss_pred cEEEEEeeeeeeC-CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc--chhccchhh
Q 006442 423 SVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP--NYFEQNQAE 499 (645)
Q Consensus 423 ~~i~~~~v~~~y~-~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~--~~~~q~~~~ 499 (645)
++++++++++.|+ +..+++++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|.+... ..+......
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~ 122 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQS 122 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHH
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhh
Confidence 4589999999997 67899999 9999999999999999999999999999999999999887754210 000000000
Q ss_pred --------cCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCC
Q 006442 500 --------ALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571 (645)
Q Consensus 500 --------~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt 571 (645)
....+.+..+.+..... ...+.+.+...+-.-...-..+..||+|| |||++| +.+|++ |
T Consensus 123 ~~~~~v~~~~~~~~~~~~r~~~~~~---~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t 189 (347)
T 2obl_A 123 TLSKCVLVVTTSDRPALERMKAAFT---ATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------R 189 (347)
T ss_dssp HHTTEEEEEECTTSCHHHHHHHHHH---HHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------B
T ss_pred hhhceEEEEECCCCCHHHHHHHHHH---HHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------c
Confidence 00011222222111100 00011111111100000115678999999 899999 577877 9
Q ss_pred CCCCHHHHHHHHHHHHhc-----Cc-----eEEEEecCHHHHHhhCCEEEEEeCCeEEe
Q 006442 572 NHLDIPSKEMLEEAISEY-----KG-----TVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (645)
Q Consensus 572 ~~LD~~s~~~l~~~l~~~-----~~-----tvi~vsHd~~~i~~~~d~v~~l~~g~i~~ 620 (645)
+|||+.....+.+++++. +. ||+++|||++ ..+||++++|.+|+++.
T Consensus 190 ~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl 246 (347)
T 2obl_A 190 GGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVL 246 (347)
T ss_dssp TTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEB
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEE
Confidence 999999999999999865 23 8999999998 67899999999999974
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-19 Score=186.74 Aligned_cols=177 Identities=14% Similarity=0.093 Sum_probs=110.5
Q ss_pred eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCee-EEEECceecccchhccch-hhcCCCCCCHHHHHHhhh
Q 006442 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG-EVLLGEHNVLPNYFEQNQ-AEALDLDKTVLETVAEAA 515 (645)
Q Consensus 438 ~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G-~i~~~g~~~~~~~~~q~~-~~~l~~~~tv~e~v~~~~ 515 (645)
++|+++++.|++|++++|+||||||||||++.|+|.+.|.+| .|.+.+.......+.... ........+..+++....
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~ 102 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREI 102 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCC
Confidence 479999999999999999999999999999999999998877 665433222111110000 000011112222222111
Q ss_pred c-ccc-HHHHHHHHhhcCCChhhhccCcCcCCHhH-HHHHHHHHHHccCCCeEEeeCCCC---C---CCH-HHHHHHHHH
Q 006442 516 E-DWR-IDDIKGLLGRCNFKADMLDRKVSLLSGGE-KARLAFCKFMVKPSTLLVLDEPTN---H---LDI-PSKEMLEEA 585 (645)
Q Consensus 516 ~-~~~-~~~~~~~L~~~~l~~~~~~~~~~~LSgGq-kqrv~lAral~~~p~lLlLDEPt~---~---LD~-~s~~~l~~~ 585 (645)
. ... ...+..+++..++. ....+..+|.+| +||+. |+++..+|++|||||||+ + +|. .....+.+.
T Consensus 103 ~~~~~~~~~~~~~l~~~~l~---i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~ 178 (296)
T 1cr0_A 103 IENGKFDQWFDELFGNDTFH---LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTK 178 (296)
T ss_dssp HHHTHHHHHHHHHHSSSCEE---EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCEE---EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHH
Confidence 0 000 11223334333331 233446789999 66666 999999999999999999 4 454 455566666
Q ss_pred HH----hcCceEEEEecCH--H--------------------HHHhhCCEEEEEeCCeE
Q 006442 586 IS----EYKGTVITVSHDR--Y--------------------FVKQIVNRVVEVKGSNL 618 (645)
Q Consensus 586 l~----~~~~tvi~vsHd~--~--------------------~i~~~~d~v~~l~~g~i 618 (645)
|+ +.+.|||++||+. + .+.++||+|++|++|+.
T Consensus 179 L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 179 LKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 64 3467999999994 5 78889999999998874
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=9.3e-20 Score=211.04 Aligned_cols=144 Identities=20% Similarity=0.180 Sum_probs=111.2
Q ss_pred ccEEEEeEEEEe---CCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC-CCccEEEEcCCCceEEEEeccCc
Q 006442 96 SGVKLENISKSY---KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-PDSGNVIKAKSNMKIAFLSQEFE 171 (645)
Q Consensus 96 ~~i~i~nls~~y---~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~-p~~G~I~~~~~~~~i~~v~Q~~~ 171 (645)
..|.++++..-. ++..+++|+||+ |++++|+||||||||||||+|+|+.. ++.|.+... ....+++++|
T Consensus 549 ~~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa-~~~~i~~v~~--- 621 (765)
T 1ewq_A 549 DRLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPA-EEAHLPLFDG--- 621 (765)
T ss_dssp SSEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSS-SEEEECCCSE---
T ss_pred CcEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeeh-hccceeeHHH---
Confidence 348888884333 335789999999 99999999999999999999999874 678875422 2345777776
Q ss_pred cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcc
Q 006442 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (645)
Q Consensus 172 ~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~ 251 (645)
++...++.||+.
T Consensus 622 i~~~~~~~d~l~-------------------------------------------------------------------- 633 (765)
T 1ewq_A 622 IYTRIGASDDLA-------------------------------------------------------------------- 633 (765)
T ss_dssp EEEECCC-------------------------------------------------------------------------
T ss_pred hhccCCHHHHHH--------------------------------------------------------------------
Confidence 233445544431
Q ss_pred cccccCCCCChHHHHHHHHHHHH--ccCCCEEEEeCC---CCCCCHHHH-HHHHHHHccCCCeEEEEecCHHHHH
Q 006442 252 DGDRLVASFSSGWQMRMSLGKIL--LQDPDLLLLDEP---TNHLDLDTI-EWLEGYLGKQDVPMVIISHDRAFLD 320 (645)
Q Consensus 252 ~~~~~~~~LSGGqkqRvaLAraL--~~~p~iLLLDEP---ts~LD~~~~-~~l~~~L~~~g~tvIivsHd~~~l~ 320 (645)
..+|+|+++++.+|+++ +.+|+++||||| |++||..+. ..+.+.|.+.|.|+|++||+.++..
T Consensus 634 ------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~ 702 (765)
T 1ewq_A 634 ------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 702 (765)
T ss_dssp -------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred ------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 24689999999999999 999999999999 999999886 4577777667899999999998864
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-20 Score=187.05 Aligned_cols=166 Identities=12% Similarity=0.129 Sum_probs=100.6
Q ss_pred CCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCCCCCHHHHHHHhhH
Q 006442 108 KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK 187 (645)
Q Consensus 108 ~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~Tv~eni~~~~~ 187 (645)
++.++|+|+||++++|+++||+||||||||||+++|+|++ |.+.++.....++|++|+. ++...|+.+++.....
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~ 84 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDR-FYKVLTAEQKAKALKG 84 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGG-GBCCCCHHHHHHHHTT
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCc-CccccCHhHhhhhhcc
Confidence 4567999999999999999999999999999999999976 4443322234699999995 5567798887642110
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHH
Q 006442 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267 (645)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqR 267 (645)
. . .. .+.+ ..+ ...+.+.+..+. ...++.+..||+||+||
T Consensus 85 ~--------------~-~~-~~~~-----------------~~~----~~~~~~~L~~l~---~~~~~~~~~ls~g~~~r 124 (245)
T 2jeo_A 85 Q--------------Y-NF-DHPD-----------------AFD----NDLMHRTLKNIV---EGKTVEVPTYDFVTHSR 124 (245)
T ss_dssp C--------------C-CT-TSGG-----------------GBC----HHHHHHHHHHHH---TTCCEEECCEETTTTEE
T ss_pred C--------------C-CC-CCcc-----------------ccc----HHHHHHHHHHHH---CCCCeecccccccccCc
Confidence 0 0 00 0000 000 011112222221 23456678999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHH-HhhcCeE
Q 006442 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL-DQLCTKI 326 (645)
Q Consensus 268 vaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l-~~~~d~i 326 (645)
+++ ++++.+|+++|||||+...|.. +.+ ..+.+|+++||+...+ ..+++.+
T Consensus 125 ~~~-~~~~~~~~~lilDg~~~~~~~~----l~~---~~~~~i~v~th~~~~~~r~~~r~~ 176 (245)
T 2jeo_A 125 LPE-TTVVYPADVVLFEGILVFYSQE----IRD---MFHLRLFVDTDSDVRLSRRVLRDV 176 (245)
T ss_dssp CSS-CEEECCCSEEEEECTTTTTSHH----HHT---TCSEEEEEECCHHHHHHHHHHHHT
T ss_pred cCc-eEEecCCCEEEEeCccccccHH----HHH---hcCeEEEEECCHHHHHHHHHHHHH
Confidence 988 6888999999999998888764 222 2478999999974444 4455544
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.9e-21 Score=194.64 Aligned_cols=140 Identities=15% Similarity=0.158 Sum_probs=90.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc-------chhccchhhcCCCCCCHHHHHHhhhccc---cHH
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP-------NYFEQNQAEALDLDKTVLETVAEAAEDW---RID 521 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~-------~~~~q~~~~~l~~~~tv~e~v~~~~~~~---~~~ 521 (645)
.++|+||||||||||+++|+|+..|++|+|.++|.++.. +++.|. ..+.+.+|+.|++.++.... ..+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~--~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEE--GGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC------CCEEEEECCCC--CCSBCTTCSH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeec--CCCcCCceEEechhhhhhcccHHHHH
Confidence 489999999999999999999999999999999876521 344443 34555667777776543211 112
Q ss_pred HHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHH
Q 006442 522 DIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRY 601 (645)
Q Consensus 522 ~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~~tvi~vsHd~~ 601 (645)
.+...+. ....+..+.+||||||||+++|||++. +++|||||++||+...+.+.. +.+. .+||+|.|..+
T Consensus 82 ~i~~~~~-----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~l~~-L~~~-~~vI~Vi~K~D 151 (270)
T 3sop_A 82 PIEKYIN-----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEFMKH-LSKV-VNIIPVIAKAD 151 (270)
T ss_dssp HHHHHHH-----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHHHHH-HHTT-SEEEEEETTGG
T ss_pred HHHHHHH-----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHHHHH-HHhc-CcEEEEEeccc
Confidence 3334433 344566778899999999999999886 999999999999988555544 4444 78999988876
Q ss_pred HH
Q 006442 602 FV 603 (645)
Q Consensus 602 ~i 603 (645)
.+
T Consensus 152 ~l 153 (270)
T 3sop_A 152 TM 153 (270)
T ss_dssp GS
T ss_pred cC
Confidence 43
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-19 Score=188.96 Aligned_cols=180 Identities=22% Similarity=0.170 Sum_probs=109.5
Q ss_pred eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCcc-EEEEcCCCceEEEEeccCccCCCCCHHHHHHHhhHH
Q 006442 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG-NVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKE 188 (645)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G-~I~~~~~~~~i~~v~Q~~~~~~~~Tv~eni~~~~~~ 188 (645)
.++|+++++.|++|++++|+|+||||||||++.|+|...|.+| .|. |+..+. +..+ +.
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~---------~~~~e~------~~~~-~~----- 80 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVG---------LAMLEE------SVEE-TA----- 80 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEE---------EEESSS------CHHH-HH-----
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEE---------EEeCcC------CHHH-HH-----
Confidence 3579999999999999999999999999999999999988877 443 333221 1111 10
Q ss_pred HHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHH-HHH
Q 006442 189 EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW-QMR 267 (645)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGq-kqR 267 (645)
.++....... .......+ .. . .+......+.+.+++...++ .....+.++|.+| +||
T Consensus 81 --------~r~~~~~~~~--~~~~~~~l-~~-~-------~~~~~~~~~~~~~~l~~~~l---~i~~~~~~~~~~~l~~~ 138 (296)
T 1cr0_A 81 --------EDLIGLHNRV--RLRQSDSL-KR-E-------IIENGKFDQWFDELFGNDTF---HLYDSFAEAETDRLLAK 138 (296)
T ss_dssp --------HHHHHHHTTC--CGGGCHHH-HH-H-------HHHHTHHHHHHHHHHSSSCE---EEECCCCSCCHHHHHHH
T ss_pred --------HHHHHHHcCC--Chhhcccc-cc-C-------CCCHHHHHHHHHHHhccCCE---EEECCCCCCCHHHHHHH
Confidence 0000000000 00000000 00 0 00111222334444443332 1222346789998 677
Q ss_pred HHHHHHHccCCCEEEEeCCCC---C---CCH-HHHHHHHHHH----ccCCCeEEEEecCH--H-----------------
Q 006442 268 MSLGKILLQDPDLLLLDEPTN---H---LDL-DTIEWLEGYL----GKQDVPMVIISHDR--A----------------- 317 (645)
Q Consensus 268 vaLAraL~~~p~iLLLDEPts---~---LD~-~~~~~l~~~L----~~~g~tvIivsHd~--~----------------- 317 (645)
+. |+++..+|++||+||||+ + +|. .....+.+.| ++.|+|||++||+. +
T Consensus 139 ~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~ 217 (296)
T 1cr0_A 139 LA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLR 217 (296)
T ss_dssp HH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC
T ss_pred HH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhc
Confidence 76 999999999999999999 4 454 4445555544 34699999999995 5
Q ss_pred ---HHHhhcCeEEEEcCce
Q 006442 318 ---FLDQLCTKIVETEMGV 333 (645)
Q Consensus 318 ---~l~~~~d~i~~l~~G~ 333 (645)
.+.++||+|+++..|.
T Consensus 218 ~s~~i~~~aD~vi~L~~~~ 236 (296)
T 1cr0_A 218 GSGALRQLSDTIIALERNQ 236 (296)
T ss_dssp ---CHHHHCSEEEEEEEC-
T ss_pred ccHHhHhhCcEEEEEecCc
Confidence 7888999999998775
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-20 Score=191.21 Aligned_cols=141 Identities=19% Similarity=0.231 Sum_probs=106.1
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCC-ccEEEEcCCCceEEEEeccCccCCCC
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKAKSNMKIAFLSQEFEVSMSR 176 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~-~G~I~~~~~~~~i~~v~Q~~~~~~~~ 176 (645)
++++++++. ++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.+.+.+ +.|++|.+..+
T Consensus 6 ~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~--i~~~~~~~~~~--- 74 (261)
T 2eyu_A 6 PEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP--IEYVFKHKKSI--- 74 (261)
T ss_dssp CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS--CCSCCCCSSSE---
T ss_pred CChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc--ceeecCCccee---
Confidence 455566542 5899999 9999999999999999999999999999998 9999887543 34554432100
Q ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCccccccc
Q 006442 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (645)
Q Consensus 177 Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~ 256 (645)
+ . -..+|+..
T Consensus 75 ---------v--------------------------------------------~-----------q~~~gl~~------ 84 (261)
T 2eyu_A 75 ---------V--------------------------------------------N-----------QREVGEDT------ 84 (261)
T ss_dssp ---------E--------------------------------------------E-----------EEEBTTTB------
T ss_pred ---------e--------------------------------------------e-----------HHHhCCCH------
Confidence 0 0 00223221
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcC
Q 006442 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM 331 (645)
Q Consensus 257 ~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~i~~l~~ 331 (645)
.+| |++||+||..+|++||||||| |+++...+.+.. ..|.+|++++|+.+ +..+||+++.+..
T Consensus 85 -~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~~-~~g~~vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 85 -KSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp -SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEECCSS-HHHHHHHHHHTSC
T ss_pred -HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHHH-ccCCEEEEEeCcch-HHHHHHHHhhhcC
Confidence 222 899999999999999999999 999877666554 45899999999988 5678898887643
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.1e-20 Score=188.10 Aligned_cols=139 Identities=15% Similarity=0.188 Sum_probs=102.1
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC-eeEEEECceecccchhccchhhcCCC
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-GGEVLLGEHNVLPNYFEQNQAEALDL 503 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~-~G~i~~~g~~~~~~~~~q~~~~~l~~ 503 (645)
++++++++. ++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++ .|+.++.. .+
T Consensus 6 ~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i--~~~~~~~~-~~-- 74 (261)
T 2eyu_A 6 PEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI--EYVFKHKK-SI-- 74 (261)
T ss_dssp CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSC--CSCCCCSS-SE--
T ss_pred CChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcc--eeecCCcc-ee--
Confidence 456666643 5899999 9999999999999999999999999999998 99999987653 23332210 00
Q ss_pred CCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHH
Q 006442 504 DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583 (645)
Q Consensus 504 ~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~ 583 (645)
... ..+++.. ..| |++||++|..+|++|+||||| |+++...+.
T Consensus 75 -----------v~q----------~~~gl~~-------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l 117 (261)
T 2eyu_A 75 -----------VNQ----------REVGEDT-------KSF------ADALRAALREDPDVIFVGEMR---DLETVETAL 117 (261)
T ss_dssp -----------EEE----------EEBTTTB-------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH
T ss_pred -----------eeH----------HHhCCCH-------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH
Confidence 000 1233311 122 899999999999999999999 999876655
Q ss_pred HHHHhcCceEEEEecCHHHHHhhCCEEEEE
Q 006442 584 EAISEYKGTVITVSHDRYFVKQIVNRVVEV 613 (645)
Q Consensus 584 ~~l~~~~~tvi~vsHd~~~i~~~~d~v~~l 613 (645)
+.. ..+.+|++++|+.+ +..+|||++.|
T Consensus 118 ~~~-~~g~~vl~t~H~~~-~~~~~dri~~l 145 (261)
T 2eyu_A 118 RAA-ETGHLVFGTLHTNT-AIDTIHRIVDI 145 (261)
T ss_dssp HHH-HTTCEEEEEECCSS-HHHHHHHHHHT
T ss_pred HHH-ccCCEEEEEeCcch-HHHHHHHHhhh
Confidence 544 34679999999987 45667765443
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-18 Score=160.20 Aligned_cols=81 Identities=27% Similarity=0.407 Sum_probs=71.4
Q ss_pred ccccCCCCChHHHHHHHHH------HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhc
Q 006442 253 GDRLVASFSSGWQMRMSLG------KILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLC 323 (645)
Q Consensus 253 ~~~~~~~LSGGqkqRvaLA------raL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~~ 323 (645)
.++++.+||||||||++|| |||+.+|++|||||||+|||+.++.++.+.+++ .|.|||+||||.+ +..+|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhC
Confidence 5788999999999999876 899999999999999999999999999988753 4789999999994 56899
Q ss_pred CeEEEE--cCcee
Q 006442 324 TKIVET--EMGVS 334 (645)
Q Consensus 324 d~i~~l--~~G~~ 334 (645)
|+++++ ++|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 45544
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.75 E-value=6.8e-18 Score=184.73 Aligned_cols=75 Identities=19% Similarity=0.372 Sum_probs=65.9
Q ss_pred ccCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcCeEE
Q 006442 255 RLVASFSSGWQMRMSLGKILL----QDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIV 327 (645)
Q Consensus 255 ~~~~~LSGGqkqRvaLAraL~----~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~~d~i~ 327 (645)
+++..||||||||++||++|+ .+|++|||||||++||+..+..+.++|++ .+.++|++||+..++ ..||+++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~ 407 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV 407 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEE
Confidence 445679999999999999999 58999999999999999999999988854 367999999997665 5799999
Q ss_pred EEc
Q 006442 328 ETE 330 (645)
Q Consensus 328 ~l~ 330 (645)
.+.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.2e-18 Score=159.52 Aligned_cols=81 Identities=32% Similarity=0.532 Sum_probs=72.0
Q ss_pred hccCcCcCCHhHHHHHHHH------HHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhC
Q 006442 537 LDRKVSLLSGGEKARLAFC------KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIV 607 (645)
Q Consensus 537 ~~~~~~~LSgGqkqrv~lA------ral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~ 607 (645)
.++++.+||||||||++|| |||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||.+ +..+|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhC
Confidence 4688999999999999876 8999999999999999999999999999999875 359999999995 56789
Q ss_pred CEEEEE--eCCeE
Q 006442 608 NRVVEV--KGSNL 618 (645)
Q Consensus 608 d~v~~l--~~g~i 618 (645)
|++++| ++|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 45643
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.9e-17 Score=175.29 Aligned_cols=75 Identities=27% Similarity=0.433 Sum_probs=66.7
Q ss_pred ccCCCCChHHHHHH------HHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcCe
Q 006442 255 RLVASFSSGWQMRM------SLGKILLQD-PDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTK 325 (645)
Q Consensus 255 ~~~~~LSGGqkqRv------aLAraL~~~-p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~d~ 325 (645)
+++..|||||+||+ ++|++|+.+ |++|||||||++||+..+..+.+.|++ .+.+||+|||+.+ +..+||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 56789999999988 567899999 999999999999999999999998864 2468999999987 5789999
Q ss_pred EEEEc
Q 006442 326 IVETE 330 (645)
Q Consensus 326 i~~l~ 330 (645)
+++++
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-19 Score=174.85 Aligned_cols=134 Identities=19% Similarity=0.202 Sum_probs=96.6
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCC--------CceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHH
Q 006442 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS--------NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194 (645)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~--------~~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~ 194 (645)
|++++|+||||||||||+++|+|+++ ++| |.+++. ...+||++|+.. . + .++
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g--~-~~~------------- 60 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTLS--G--T-RGP------------- 60 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEETT--S--C-EEE-------------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEecc--c--c-eeh-------------
Confidence 78999999999999999999999998 889 776542 246888888741 1 0 011
Q ss_pred HHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCc------ccccccCCCCChHHHHHH
Q 006442 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA------DDGDRLVASFSSGWQMRM 268 (645)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~------~~~~~~~~~LSGGqkqRv 268 (645)
+..+++.. +...++...+|+|||+++
T Consensus 61 ------------------------------------------------l~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~ 92 (189)
T 2i3b_A 61 ------------------------------------------------LSRVGLEPPPGKRECRVGQYVVDLTSFEQLAL 92 (189)
T ss_dssp ------------------------------------------------EEECCCCCCSSSCCEESSSSEECHHHHHTTTT
T ss_pred ------------------------------------------------hhcccccCCccccccccceEEEcchHHHHHHH
Confidence 11111111 122344567999999998
Q ss_pred -HHHH---HHccCCCEEEEeC--CCCCCCHHHHHHHHHHHccCCCeEE---EEecCH--HHHHhhcC
Q 006442 269 -SLGK---ILLQDPDLLLLDE--PTNHLDLDTIEWLEGYLGKQDVPMV---IISHDR--AFLDQLCT 324 (645)
Q Consensus 269 -aLAr---aL~~~p~iLLLDE--Pts~LD~~~~~~l~~~L~~~g~tvI---ivsHd~--~~l~~~~d 324 (645)
+|++ |+..+|+|||||| |++.+|....+.|.++++....+|| .||||. .+++++++
T Consensus 93 ~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti~vsh~~~~~~vd~i~~ 159 (189)
T 2i3b_A 93 PVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRN 159 (189)
T ss_dssp TTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCCTTHHHHHT
T ss_pred HHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEeecCCCCchHHHHHHee
Confidence 4455 6899999999999 9999999999999999986544442 345987 56666554
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-20 Score=180.77 Aligned_cols=154 Identities=17% Similarity=0.190 Sum_probs=104.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc--------chhccchhhcCCCCCCHHHHHHhhhccccHH
Q 006442 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP--------NYFEQNQAEALDLDKTVLETVAEAAEDWRID 521 (645)
Q Consensus 450 Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~--------~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~ 521 (645)
|++++|+||||||||||+++|+|+++ ++| |.++|.+... ++..|.. ...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~----~g~----------------- 57 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL----SGT----------------- 57 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEET----TSC-----------------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEec----ccc-----------------
Confidence 78999999999999999999999999 889 8887754411 1222111 000
Q ss_pred HHHHHHhhcCCChh------hhccCcCcCCHhHHHHH-HHHH---HHccCCCeEEeeC--CCCCCCHHHHHHHHHHHHhc
Q 006442 522 DIKGLLGRCNFKAD------MLDRKVSLLSGGEKARL-AFCK---FMVKPSTLLVLDE--PTNHLDIPSKEMLEEAISEY 589 (645)
Q Consensus 522 ~~~~~L~~~~l~~~------~~~~~~~~LSgGqkqrv-~lAr---al~~~p~lLlLDE--Pt~~LD~~s~~~l~~~l~~~ 589 (645)
...+..+++... ...++...+|+|||+++ ++++ |++.+|++||||| ||+.+|....+.|.+++..+
T Consensus 58 --~~~l~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~ 135 (189)
T 2i3b_A 58 --RGPLSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP 135 (189)
T ss_dssp --EEEEEECCCCCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS
T ss_pred --eehhhcccccCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCC
Confidence 001222222111 23444557999999988 4455 6899999999999 99999999999999999876
Q ss_pred CceEE---EEecCH--HHHHhhCCEEEEEeCCeEEeeC-CChhHHHHHH
Q 006442 590 KGTVI---TVSHDR--YFVKQIVNRVVEVKGSNLQDYA-GDYNQVQSLW 632 (645)
Q Consensus 590 ~~tvi---~vsHd~--~~i~~~~d~v~~l~~g~i~~~~-~~~~~~~~~~ 632 (645)
..+|| .||||. +++.++ ..+++|++...+ .+.+...+..
T Consensus 136 ~~~ilgti~vsh~~~~~~vd~i----~~~~~~~i~~~~~~nr~~~~~~i 180 (189)
T 2i3b_A 136 GTIILGTIPVPKGKPLALVEEI----RNRKDVKVFNVTKENRNHLLPDI 180 (189)
T ss_dssp SCCEEEECCCCCSSCCTTHHHH----HTTCCSEEEECCSSSGGGHHHHH
T ss_pred CcEEEEEeecCCCCchHHHHHH----eecCCcEEEEeChHhHHHHHHHH
Confidence 55553 556987 555554 444667776544 4666554433
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5.1e-19 Score=175.95 Aligned_cols=72 Identities=17% Similarity=0.196 Sum_probs=46.4
Q ss_pred ChHH-HHHHHHHHHHcc-------CCCEEEEeCCCCCCCHHH----------------HHHHHHHHccCCCeEEEEec--
Q 006442 261 SSGW-QMRMSLGKILLQ-------DPDLLLLDEPTNHLDLDT----------------IEWLEGYLGKQDVPMVIISH-- 314 (645)
Q Consensus 261 SGGq-kqRvaLAraL~~-------~p~iLLLDEPts~LD~~~----------------~~~l~~~L~~~g~tvIivsH-- 314 (645)
++++ ++.+..+++++. +|++|+|||||++||+.. ...|.++.++.|+|||++||
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~ 180 (231)
T 4a74_A 101 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ 180 (231)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred ChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 4443 333555555555 999999999999999831 12222333456999999999
Q ss_pred --CHHHHHhhcCeEEEEcCc
Q 006442 315 --DRAFLDQLCTKIVETEMG 332 (645)
Q Consensus 315 --d~~~l~~~~d~i~~l~~G 332 (645)
+...+..+||+++.++.|
T Consensus 181 ~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 181 ANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp ---------CCSEEEEEEEC
T ss_pred cCcchhhHhhceEEEEEEec
Confidence 555599999999999865
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.2e-18 Score=199.18 Aligned_cols=156 Identities=16% Similarity=0.167 Sum_probs=109.4
Q ss_pred CcEEEEEeeeeee-----CCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHH--------HcCCCCCeeEEEECceec
Q 006442 422 RSVVTIKNLEFGY-----EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--------MGLEKPRGGEVLLGEHNV 488 (645)
Q Consensus 422 ~~~i~~~~v~~~y-----~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l--------~g~~~p~~G~i~~~g~~~ 488 (645)
...|++++...-+ +++.++++++|++++|++++|+||||||||||||+| .|.+-|..+...
T Consensus 629 ~~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~------ 702 (934)
T 3thx_A 629 QGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEV------ 702 (934)
T ss_dssp SCEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEE------
T ss_pred CcceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccc------
Confidence 3457777765443 235689999999999999999999999999999999 666555443210
Q ss_pred ccchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHH--ccCCCeEE
Q 006442 489 LPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM--VKPSTLLV 566 (645)
Q Consensus 489 ~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral--~~~p~lLl 566 (645)
+.+. .++.++|.. +.....+|+|+++++.+|+++ +.+|+++|
T Consensus 703 --~~~d------------------------------~i~~~ig~~----d~l~~~lStf~~e~~~~a~il~~a~~~sLlL 746 (934)
T 3thx_A 703 --SIVD------------------------------CILARVGAG----DSQLKGVSTFMAEMLETASILRSATKDSLII 746 (934)
T ss_dssp --ECCS------------------------------EEEEECC-------------CHHHHHHHHHHHHHHHCCTTCEEE
T ss_pred --hHHH------------------------------HHHHhcCch----hhHHHhHhhhHHHHHHHHHHHHhccCCcEEE
Confidence 0000 112223331 122334788888888888888 99999999
Q ss_pred eeCCCCCCCHHHHHHH-HHHHH---h-cCceEEEEecCHHHHHhhCCEEEEEeCCeEEe
Q 006442 567 LDEPTNHLDIPSKEML-EEAIS---E-YKGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (645)
Q Consensus 567 LDEPt~~LD~~s~~~l-~~~l~---~-~~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~ 620 (645)
|||||+|+|+.....+ ..+++ + .+.++|++|||.++. .+||++..+.+|++..
T Consensus 747 LDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ng~v~~ 804 (934)
T 3thx_A 747 IDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPTVNNLHVTA 804 (934)
T ss_dssp EESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEEEEEEE
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccceeEeeEEEE
Confidence 9999999999887666 33333 3 367999999997765 6899998888888763
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.9e-20 Score=191.62 Aligned_cols=158 Identities=16% Similarity=0.158 Sum_probs=83.8
Q ss_pred EeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcC-CCCCccEEEEcCC-------CceEEEEeccCcc
Q 006442 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ-EEPDSGNVIKAKS-------NMKIAFLSQEFEV 172 (645)
Q Consensus 101 ~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~-~~p~~G~I~~~~~-------~~~i~~v~Q~~~~ 172 (645)
.|++++|+++.++++++|+| +|+|+||+|||||+++|+|. ..|++| |.+.+. ...++|++|+...
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~ 74 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERGV 74 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC---C
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCCc
Confidence 47899999999999999998 99999999999999999998 888888 544321 1247888887766
Q ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCccc
Q 006442 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (645)
Q Consensus 173 ~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~ 252 (645)
...+|++|+.... .... . .+.+ . .+...+. +.
T Consensus 75 ~~~ltv~Dt~g~~--~~~~------~-~e~~----------~-------------------~l~~~l~----------~~ 106 (301)
T 2qnr_A 75 KLRLTVVDTPGYG--DAIN------C-RDCF----------K-------------------TIISYID----------EQ 106 (301)
T ss_dssp CEEEEEEEEC--------------------C----------T-------------------THHHHHH----------HH
T ss_pred ccCcchhhhhhhh--hhcC------c-HHHH----------H-------------------HHHHHHH----------HH
Confidence 5666777764311 0000 0 0000 0 0000000 11
Q ss_pred ccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC-CCHHHHHHHHHHHccCCCeEEEEecCHH
Q 006442 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNH-LDLDTIEWLEGYLGKQDVPMVIISHDRA 317 (645)
Q Consensus 253 ~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~-LD~~~~~~l~~~L~~~g~tvIivsHd~~ 317 (645)
.++++.++|||||||+.+|||++ +|++||||++ ||+...+.+..+-.+.+.++|+++||+.
T Consensus 107 ~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 107 FERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGGGS
T ss_pred HHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCCCC
Confidence 23446789999999999999986 9999999985 9998865554443334788899999974
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=8.4e-18 Score=198.03 Aligned_cols=152 Identities=17% Similarity=0.146 Sum_probs=106.2
Q ss_pred cEEEEeEEEEe-----CCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHH--------HcCCCCCccEEEEcCCCceE
Q 006442 97 GVKLENISKSY-----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRII--------AGQEEPDSGNVIKAKSNMKI 163 (645)
Q Consensus 97 ~i~i~nls~~y-----~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l--------~G~~~p~~G~I~~~~~~~~i 163 (645)
.|.+++...-+ ++..+++|++|++++|++++|+||||||||||||+| .|..-|..+.. +
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~--------~ 702 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE--------V 702 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------E
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------c
Confidence 47777765444 234689999999999999999999999999999999 55544433211 1
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhc
Q 006442 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (645)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (645)
+.+. +++
T Consensus 703 ~~~d-------------------------------------------------------------------------~i~ 709 (934)
T 3thx_A 703 SIVD-------------------------------------------------------------------------CIL 709 (934)
T ss_dssp ECCS-------------------------------------------------------------------------EEE
T ss_pred hHHH-------------------------------------------------------------------------HHH
Confidence 1110 112
Q ss_pred hhcCCCcccccccCCCCChHHHHHHHHHHHH--ccCCCEEEEeCCCCCCCHHHHHHH----HHHHcc-CCCeEEEEecCH
Q 006442 244 PELGFTADDGDRLVASFSSGWQMRMSLGKIL--LQDPDLLLLDEPTNHLDLDTIEWL----EGYLGK-QDVPMVIISHDR 316 (645)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL--~~~p~iLLLDEPts~LD~~~~~~l----~~~L~~-~g~tvIivsHd~ 316 (645)
..+|+. +.....+|+|+++++.+|+++ +.+|+++||||||+|||+.....+ .+.|.+ .|+|+|++||+.
T Consensus 710 ~~ig~~----d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~ 785 (934)
T 3thx_A 710 ARVGAG----DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH 785 (934)
T ss_dssp EECC-------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG
T ss_pred HhcCch----hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH
Confidence 222321 122356788888888888888 999999999999999999876554 344443 589999999997
Q ss_pred HHHHhhcCeEEEEcCcee
Q 006442 317 AFLDQLCTKIVETEMGVS 334 (645)
Q Consensus 317 ~~l~~~~d~i~~l~~G~~ 334 (645)
+.. .+||++..+.+|++
T Consensus 786 el~-~lad~~~~v~ng~v 802 (934)
T 3thx_A 786 ELT-ALANQIPTVNNLHV 802 (934)
T ss_dssp GGG-GGGGTCTTEEEEEE
T ss_pred HHH-HHhcccceeEeeEE
Confidence 655 68998877777764
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.2e-19 Score=178.32 Aligned_cols=161 Identities=14% Similarity=0.105 Sum_probs=98.1
Q ss_pred CCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCCCCCCHHHHHHhh
Q 006442 435 EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA 514 (645)
Q Consensus 435 ~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~ 514 (645)
+++.+|+++||++++|+++||+||||||||||+++|+|++ |.+.++...-..+++.+. .+....++.+++...
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d---~~~~~l~~~~~~~~~ 82 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQD---RFYKVLTAEQKAKAL 82 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGG---GGBCCCCHHHHHHHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCC---cCccccCHhHhhhhh
Confidence 4567999999999999999999999999999999999976 333222100012344443 234467888876543
Q ss_pred hc--------cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHH
Q 006442 515 AE--------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI 586 (645)
Q Consensus 515 ~~--------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l 586 (645)
.. .+..+.+.+.|+.+ .+..+.++..||+||+||+++ ++++.+|+++|||||....|.. +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~L~~l---~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l 150 (245)
T 2jeo_A 83 KGQYNFDHPDAFDNDLMHRTLKNI---VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------I 150 (245)
T ss_dssp TTCCCTTSGGGBCHHHHHHHHHHH---HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------H
T ss_pred ccCCCCCCcccccHHHHHHHHHHH---HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------H
Confidence 21 12233455566543 233467788999999999988 6888999999999998887754 2
Q ss_pred Hh-cCceEEEEecCHH-HHHhhCCEEEEEeCCe
Q 006442 587 SE-YKGTVITVSHDRY-FVKQIVNRVVEVKGSN 617 (645)
Q Consensus 587 ~~-~~~tvi~vsHd~~-~i~~~~d~v~~l~~g~ 617 (645)
.+ .+.+|+++||+.. ....+++++ ++|+
T Consensus 151 ~~~~~~~i~v~th~~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 151 RDMFHLRLFVDTDSDVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp HTTCSEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred HHhcCeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence 22 3679999999744 444444444 5554
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.3e-17 Score=179.30 Aligned_cols=75 Identities=28% Similarity=0.402 Sum_probs=66.6
Q ss_pred cCcCcCCHhHHHHHHHHHHHc----cCCCeEEeeCCCCCCCHHHHHHHHHHHHhcC---ceEEEEecCHHHHHhhCCEEE
Q 006442 539 RKVSLLSGGEKARLAFCKFMV----KPSTLLVLDEPTNHLDIPSKEMLEEAISEYK---GTVITVSHDRYFVKQIVNRVV 611 (645)
Q Consensus 539 ~~~~~LSgGqkqrv~lAral~----~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~---~tvi~vsHd~~~i~~~~d~v~ 611 (645)
+++..||||||||++||++|+ .+|++|||||||++||+..+..+.+.|.++. .++|+|||+..++ ..||+++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~ 407 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV 407 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEE
Confidence 334569999999999999999 5899999999999999999999999998763 4999999997665 5799999
Q ss_pred EEe
Q 006442 612 EVK 614 (645)
Q Consensus 612 ~l~ 614 (645)
.|.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 996
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.5e-18 Score=201.91 Aligned_cols=147 Identities=12% Similarity=0.138 Sum_probs=97.8
Q ss_pred cEEEEeEEEEe-------CCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC-CCccEEEEcCCCceEEEEec
Q 006442 97 GVKLENISKSY-------KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-PDSGNVIKAKSNMKIAFLSQ 168 (645)
Q Consensus 97 ~i~i~nls~~y-------~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~-p~~G~I~~~~~~~~i~~v~Q 168 (645)
.|.+++...-. ++..+++|++|++++|++++|+||||||||||||+|++..- +..|.. +......++++.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~-vpa~~~~i~~~d- 717 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSY-VPAEEATIGIVD- 717 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCC-BSSSEEEEECCS-
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCcc-ccchhhhhhHHH-
Confidence 47777765433 23569999999999999999999999999999999975421 111110 000001111111
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCC
Q 006442 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (645)
Q Consensus 169 ~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (645)
+++..+|+
T Consensus 718 ------------------------------------------------------------------------~i~~~ig~ 725 (918)
T 3thx_B 718 ------------------------------------------------------------------------GIFTRMGA 725 (918)
T ss_dssp ------------------------------------------------------------------------EEEEEC--
T ss_pred ------------------------------------------------------------------------HHHHhCCh
Confidence 11222222
Q ss_pred CcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH-H---HH-ccCCCeEEEEecCHHHH
Q 006442 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLE-G---YL-GKQDVPMVIISHDRAFL 319 (645)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~-~---~L-~~~g~tvIivsHd~~~l 319 (645)
. +...+...++|+||+|++.++++ +.+|+++||||||+|||+.....+. . .| ++.|+|||++||+.+..
T Consensus 726 ~-d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~ 799 (918)
T 3thx_B 726 A-DNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC 799 (918)
T ss_dssp ---------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred H-HHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH
Confidence 1 22234467899999999999999 8999999999999999998766554 3 33 34689999999998765
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=8.8e-18 Score=194.54 Aligned_cols=143 Identities=19% Similarity=0.176 Sum_probs=103.4
Q ss_pred EEEEEeeeeee---CCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-CCeeEEEECceecccchhccchhh
Q 006442 424 VVTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-PRGGEVLLGEHNVLPNYFEQNQAE 499 (645)
Q Consensus 424 ~i~~~~v~~~y---~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~-p~~G~i~~~g~~~~~~~~~q~~~~ 499 (645)
.|++++...-. +++.+++++||+ |++++|+||||||||||||+|+|+.. +..|.+.-.. ....+++.+
T Consensus 550 ~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~-~~~i~~v~~---- 621 (765)
T 1ewq_A 550 RLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAE-EAHLPLFDG---- 621 (765)
T ss_dssp SEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSS-EEEECCCSE----
T ss_pred cEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehh-ccceeeHHH----
Confidence 47888774433 346789999999 99999999999999999999999874 5666532110 001112211
Q ss_pred cCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHH--ccCCCeEEeeCC---CCCC
Q 006442 500 ALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM--VKPSTLLVLDEP---TNHL 574 (645)
Q Consensus 500 ~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral--~~~p~lLlLDEP---t~~L 574 (645)
+....++.+++ ...+|+|+++++.+|+++ +.+|+++||||| |++|
T Consensus 622 -i~~~~~~~d~l-----------------------------~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~l 671 (765)
T 1ewq_A 622 -IYTRIGASDDL-----------------------------AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSL 671 (765)
T ss_dssp -EEEECCC-----------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHH
T ss_pred -hhccCCHHHHH-----------------------------HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCc
Confidence 11111222211 123799999999999999 999999999999 9999
Q ss_pred CHHHH-HHHHHHHHhcCceEEEEecCHHHHH
Q 006442 575 DIPSK-EMLEEAISEYKGTVITVSHDRYFVK 604 (645)
Q Consensus 575 D~~s~-~~l~~~l~~~~~tvi~vsHd~~~i~ 604 (645)
|..+. ..+.+.|.+.+.|+|++|||.+++.
T Consensus 672 D~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~ 702 (765)
T 1ewq_A 672 DGVAIATAVAEALHERRAYTLFATHYFELTA 702 (765)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 99886 5688888776779999999998864
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.7e-17 Score=161.05 Aligned_cols=158 Identities=19% Similarity=0.251 Sum_probs=90.3
Q ss_pred EEEeeeeeeCCe-eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-------CeeEEEECceeccc----chh
Q 006442 426 TIKNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-------RGGEVLLGEHNVLP----NYF 493 (645)
Q Consensus 426 ~~~~v~~~y~~~-~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p-------~~G~i~~~g~~~~~----~~~ 493 (645)
+++.++..++.- .++.+ .|++|++++|+||||||||||+++|+|.+.+ ..|.+++++.+... .++
T Consensus 3 ~~~~i~tG~~~LD~~l~g---gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~ 79 (231)
T 4a74_A 3 TIGRISTGSKSLDKLLGG---GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREI 79 (231)
T ss_dssp CCCEECCSCHHHHHHTTS---SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHH
T ss_pred cCCccCCCChhHHhHhcC---CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHH
Confidence 344555555321 23333 6899999999999999999999999996554 33466666543110 011
Q ss_pred ccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHH-HHHHHHHHHcc-------CCCeE
Q 006442 494 EQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK-ARLAFCKFMVK-------PSTLL 565 (645)
Q Consensus 494 ~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqk-qrv~lAral~~-------~p~lL 565 (645)
.|. ..+.+ + ..++.+.+ ...++.+++ +.+..++.++. +|++|
T Consensus 80 ~~~--~~~~~-----------------~---~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 129 (231)
T 4a74_A 80 AQN--RGLDP-----------------D---EVLKHIYV--------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLL 129 (231)
T ss_dssp HHH--TTSCH-----------------H---HHHHTEEE--------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEE
T ss_pred HHH--cCCCH-----------------H---HHhhcEEE--------EecCChHHHHHHHHHHHHHHHHhcccCCceeEE
Confidence 111 01100 0 11111111 112344433 33555555544 89999
Q ss_pred EeeCCCCCCCHHH-------H-----HHHHHHH----HhcCceEEEEec----CHHHHHhhCCEEEEEeCC
Q 006442 566 VLDEPTNHLDIPS-------K-----EMLEEAI----SEYKGTVITVSH----DRYFVKQIVNRVVEVKGS 616 (645)
Q Consensus 566 lLDEPt~~LD~~s-------~-----~~l~~~l----~~~~~tvi~vsH----d~~~i~~~~d~v~~l~~g 616 (645)
+|||||+++|+.. . ..+.+.| ++.+.|||+||| +-..+..+||++++|++|
T Consensus 130 ilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 130 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp EEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred EECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 9999999999841 1 1333333 345779999999 555599999999999864
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-19 Score=187.14 Aligned_cols=158 Identities=15% Similarity=0.146 Sum_probs=77.2
Q ss_pred EeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcC-CCCCeeEEEECceeccc-------chhccchhh
Q 006442 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL-EKPRGGEVLLGEHNVLP-------NYFEQNQAE 499 (645)
Q Consensus 428 ~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~-~~p~~G~i~~~g~~~~~-------~~~~q~~~~ 499 (645)
+||+++|+++.++++++|+| +|+|+||+|||||++.|+|. +.|++| +.++|.++.+ ++..+. .
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~--~ 72 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEE--R 72 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC----
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecC--C
Confidence 47889999899999999998 99999999999999999998 888888 7666544321 111111 1
Q ss_pred cCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCC-CCHHH
Q 006442 500 ALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNH-LDIPS 578 (645)
Q Consensus 500 ~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~-LD~~s 578 (645)
.....++++|++.++......+....+... + .+..++.+.++|||||||+.+|||++ +|++||||++ ||+..
T Consensus 73 ~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l-~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~ 145 (301)
T 2qnr_A 73 GVKLRLTVVDTPGYGDAINCRDCFKTIISY--I-DEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLD 145 (301)
T ss_dssp -CCEEEEEEEEC-----------CTTHHHH--H-HHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHH
T ss_pred CcccCcchhhhhhhhhhcCcHHHHHHHHHH--H-HHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHH
Confidence 222233444443322110000000111111 0 12345777889999999999999986 9999999985 99988
Q ss_pred HHHHHHHHHhcCceEEEEecCHH
Q 006442 579 KEMLEEAISEYKGTVITVSHDRY 601 (645)
Q Consensus 579 ~~~l~~~l~~~~~tvi~vsHd~~ 601 (645)
.+.+.++-...+.++|+++||+.
T Consensus 146 ~~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 146 VAFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHHHHTTTSCEEEEECCGGGS
T ss_pred HHHHHHHHhcCCEEEEEEeCCCC
Confidence 64444332223568999999974
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=6.6e-20 Score=180.62 Aligned_cols=143 Identities=15% Similarity=0.081 Sum_probs=103.4
Q ss_pred EECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccC--CCCCHHHHHHHhhHHHHHHHHHHH
Q 006442 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS--MSRTVREEFMSAFKEEMEIAGKLE 197 (645)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~--~~~Tv~eni~~~~~~~~~~~~~~~ 197 (645)
.++|+++||+||||||||||+++|+|++.| .++|++|++.+. ...|+.++....+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~--------- 61 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE------------RVALLPMDHYYKDLGHLPLEERLRVNYDH--------- 61 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG------------GEEEEEGGGCBCCCTTSCHHHHHHSCTTS---------
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC------------CeEEEecCccccCcccccHHHhcCCCCCC---------
Confidence 578999999999999999999999998765 488999998664 345777764321110
Q ss_pred HHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHH----HHHHHHHHH
Q 006442 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW----QMRMSLGKI 273 (645)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGq----kqRvaLAra 273 (645)
.. ....+++.+.+..+++. +..++++.++|+|| +||+++|++
T Consensus 62 ------~~---------------------------~~~~~~~~~~l~~~~~~-~~~~~~~~~~s~g~~~~~~~~~~~~~~ 107 (211)
T 3asz_A 62 ------PD---------------------------AFDLALYLEHAQALLRG-LPVEMPVYDFRAYTRSPRRTPVRPAPV 107 (211)
T ss_dssp ------GG---------------------------GBCHHHHHHHHHHHHTT-CCEEECCEETTTTEECSSCEEECCCSE
T ss_pred ------hh---------------------------hhhHHHHHHHHHHHHcC-CCcCCCcccCcccCCCCCeEEeCCCcE
Confidence 00 00011223334444443 34456789999996 478899999
Q ss_pred HccCCCEEEEeCCCCC-------CCHHHHHHHHHHHc----cCCCeEEEEecCHH
Q 006442 274 LLQDPDLLLLDEPTNH-------LDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (645)
Q Consensus 274 L~~~p~iLLLDEPts~-------LD~~~~~~l~~~L~----~~g~tvIivsHd~~ 317 (645)
++.+|+++++||||++ ||+.....+.+.++ +.|.|+++++|+..
T Consensus 108 li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 108 VILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp EEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred EEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999 89988777776654 35899999999843
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-17 Score=194.17 Aligned_cols=152 Identities=19% Similarity=0.245 Sum_probs=100.3
Q ss_pred EEEEEeeeeee-------CCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC-eeEEEECceecccchhcc
Q 006442 424 VVTIKNLEFGY-------EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-GGEVLLGEHNVLPNYFEQ 495 (645)
Q Consensus 424 ~i~~~~v~~~y-------~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~-~G~i~~~g~~~~~~~~~q 495 (645)
.|.+++...-. +++.++++++|++++|++++|+||||||||||||+|+++.-.. .|. +++.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~-----------~vpa 708 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGS-----------YVPA 708 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTC-----------CBSS
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCc-----------cccc
Confidence 57777755432 2467899999999999999999999999999999997642110 000 0000
Q ss_pred chhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCC
Q 006442 496 NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575 (645)
Q Consensus 496 ~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD 575 (645)
... .+.. +..++.++++ .+......+.+|+|++|++.++++ +.+|+||||||||+|||
T Consensus 709 ~~~-~i~~-------------------~d~i~~~ig~-~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 709 EEA-TIGI-------------------VDGIFTRMGA-ADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp SEE-EEEC-------------------CSEEEEEC-----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred hhh-hhhH-------------------HHHHHHhCCh-HHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 000 0000 0012233443 234456678899999999999999 89999999999999999
Q ss_pred HHHHHHHH-HHHHh----cCceEEEEecCHHHHHhhCCE
Q 006442 576 IPSKEMLE-EAISE----YKGTVITVSHDRYFVKQIVNR 609 (645)
Q Consensus 576 ~~s~~~l~-~~l~~----~~~tvi~vsHd~~~i~~~~d~ 609 (645)
+.....+. .+++. .+.|||++|||.+.+. ++|+
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~-l~~~ 804 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCE-LEKN 804 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-HHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH-HHhh
Confidence 99887765 44442 3569999999987763 4443
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.67 E-value=8.7e-18 Score=175.13 Aligned_cols=141 Identities=16% Similarity=0.183 Sum_probs=96.5
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------------ceEEEEeccCccCCCCCHHHHHHHh
Q 006442 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------------MKIAFLSQEFEVSMSRTVREEFMSA 185 (645)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------------~~i~~v~Q~~~~~~~~Tv~eni~~~ 185 (645)
+|++++|+||||||||||+++|+|+++|++|+|.+.+.+ ..++|++|++...+..++++|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999987643 2488999988766666777776421
Q ss_pred hHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHH
Q 006442 186 FKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265 (645)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqk 265 (645)
.. .. .+ ..+++..|... ..++ .++..++
T Consensus 181 ~~----------------~~------------------------~d--------~~llDt~G~~~-~~~~---~~~eLs~ 208 (304)
T 1rj9_A 181 KA----------------RG------------------------YD--------LLFVDTAGRLH-TKHN---LMEELKK 208 (304)
T ss_dssp HH----------------HT------------------------CS--------EEEECCCCCCT-TCHH---HHHHHHH
T ss_pred Hh----------------CC------------------------CC--------EEEecCCCCCC-chHH---HHHHHHH
Confidence 00 00 00 01233334321 1122 2344558
Q ss_pred HHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHH
Q 006442 266 MRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRA 317 (645)
Q Consensus 266 qRvaLAraL~~~p~--iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~ 317 (645)
||++||||++.+|+ +|.|| |+++.+. ...+..+.+..+.|+|++||+.+
T Consensus 209 ~r~~iaRal~~~P~~~lLvLD-a~t~~~~--~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 209 VKRAIAKADPEEPKEVWLVLD-AVTGQNG--LEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHHHHHHCTTCCSEEEEEEE-TTBCTHH--HHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHhhcCCCCeEEEEEc-HHHHHHH--HHHHHHHHHHcCCcEEEEECCcc
Confidence 99999999999999 56666 5555442 23333333445899999999843
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.4e-16 Score=156.49 Aligned_cols=166 Identities=11% Similarity=0.098 Sum_probs=104.7
Q ss_pred eeceeeeeE-EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccch-hhcCCCCCCHHHHHHhh
Q 006442 437 RLLFNRANL-TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQ-AEALDLDKTVLETVAEA 514 (645)
Q Consensus 437 ~~~l~~vsl-~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~-~~~l~~~~tv~e~v~~~ 514 (645)
.+.|+++.. .|++|++++|+||||||||||++.|++...+.+|.+.+.+.+.....+.... .....+......++. .
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 87 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLI-I 87 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEE-E
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEE-E
Confidence 345777776 7999999999999999999999999998877777776644322111100000 000000000000000 0
Q ss_pred hccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCC--eEEeeCCCCCC--CHHHHHHHHHHHHh--
Q 006442 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST--LLVLDEPTNHL--DIPSKEMLEEAISE-- 588 (645)
Q Consensus 515 ~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~--lLlLDEPt~~L--D~~s~~~l~~~l~~-- 588 (645)
..... ..++ ... .....|.++.++...+.+...+|+ +||+||||+.+ |+.....+.+.|.+
T Consensus 88 ~~~~~--------~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~ 154 (235)
T 2w0m_A 88 IDALM--------KEKE--DQW---SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVL 154 (235)
T ss_dssp EECCC--------------CTT---BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHH
T ss_pred Eeccc--------cccC--cee---eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHH
Confidence 00000 0000 000 112359999999888888888999 99999999888 99887777776654
Q ss_pred --cCceEEEEecCH--------HHHHhhCCEEEEEeCC
Q 006442 589 --YKGTVITVSHDR--------YFVKQIVNRVVEVKGS 616 (645)
Q Consensus 589 --~~~tvi~vsHd~--------~~i~~~~d~v~~l~~g 616 (645)
.+.|||++||+. ..+..+||+|++|+..
T Consensus 155 ~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 155 NKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp HHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 466999999999 5588999999999753
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-16 Score=156.98 Aligned_cols=167 Identities=13% Similarity=0.133 Sum_probs=104.4
Q ss_pred eeeeeeeeE-EEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCCCCCHHHHHHHhhHH
Q 006442 110 VTVLKDVTW-EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKE 188 (645)
Q Consensus 110 ~~vL~~vsl-~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~Tv~eni~~~~~~ 188 (645)
.+.|+++.. .+++|++++|+||||||||||++.|++...+..|.|.+ +..+. +. +.+..
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~---------~~~~~------~~-~~~~~---- 68 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIY---------VTTEE------SR-DSIIR---- 68 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEE---------EESSS------CH-HHHHH----
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE---------EEccc------CH-HHHHH----
Confidence 456888887 89999999999999999999999999987766665543 33221 11 11110
Q ss_pred HHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHH
Q 006442 189 EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268 (645)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv 268 (645)
++. .+.. +...+ ... ....+ +.....++ . .. .....|.++.++.
T Consensus 69 ---------~~~-~~~~---~~~~~---~~~------~~~~~---------~~~~~~~~-~-~~---~~~~~~~~~~~~~ 112 (235)
T 2w0m_A 69 ---------QAK-QFNW---DFEEY---IEK------KLIII---------DALMKEKE-D-QW---SLVNLTPEELVNK 112 (235)
T ss_dssp ---------HHH-HTTC---CCGGG---BTT------TEEEE---------ECCC-----C-TT---BCSSCCHHHHHHH
T ss_pred ---------HHH-Hhcc---hHHHH---hhC------CEEEE---------eccccccC-c-ee---eecCCCHHHHHHH
Confidence 000 0000 00000 000 00000 00000000 0 00 1234599999998
Q ss_pred HHHHHHccCCC--EEEEeCCCCCC--CHHHHHHHHHHH----ccCCCeEEEEecCH--------HHHHhhcCeEEEEcCc
Q 006442 269 SLGKILLQDPD--LLLLDEPTNHL--DLDTIEWLEGYL----GKQDVPMVIISHDR--------AFLDQLCTKIVETEMG 332 (645)
Q Consensus 269 aLAraL~~~p~--iLLLDEPts~L--D~~~~~~l~~~L----~~~g~tvIivsHd~--------~~l~~~~d~i~~l~~G 332 (645)
..+.+...+|+ +|++||||+++ |+.....+.+.| ++.|+|||+++|+. ..+.++||+|++++..
T Consensus 113 ~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 113 VIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp HHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 88888888999 99999999888 987776666554 45689999999999 5588999999999764
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-18 Score=170.63 Aligned_cols=142 Identities=9% Similarity=-0.008 Sum_probs=103.2
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCCCCCCHHHHHHhhh---ccccHHHH
Q 006442 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAA---EDWRIDDI 523 (645)
Q Consensus 447 i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~---~~~~~~~~ 523 (645)
.++|+++||+|+||||||||+++|+|++.|. ..++.|.....-....++.++..... .......+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~------------i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGER------------VALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALY 70 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGGG------------EEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCCC------------eEEEecCccccCcccccHHHhcCCCCCChhhhhHHHH
Confidence 5789999999999999999999999998651 12222221100012456766654322 12234556
Q ss_pred HHHHhhcCCChhhhccCcCcCCHhH----HHHHHHHHHHccCCCeEEeeCCCCC-------CCHHHHHHHHHHHHhc---
Q 006442 524 KGLLGRCNFKADMLDRKVSLLSGGE----KARLAFCKFMVKPSTLLVLDEPTNH-------LDIPSKEMLEEAISEY--- 589 (645)
Q Consensus 524 ~~~L~~~~l~~~~~~~~~~~LSgGq----kqrv~lAral~~~p~lLlLDEPt~~-------LD~~s~~~l~~~l~~~--- 589 (645)
.+.++.+++. +..+.++..+|+|| +||+++|++++.+|.++++||||++ ||+.....+.+.+.+.
T Consensus 71 ~~~l~~~~~~-~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~ 149 (211)
T 3asz_A 71 LEHAQALLRG-LPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLE 149 (211)
T ss_dssp HHHHHHHHTT-CCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-CCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 6777777764 44567888999996 4788999999999999999999999 9999998888887653
Q ss_pred -CceEEEEecCHH
Q 006442 590 -KGTVITVSHDRY 601 (645)
Q Consensus 590 -~~tvi~vsHd~~ 601 (645)
+.|++.++|+..
T Consensus 150 ~g~t~~~~~~~~~ 162 (211)
T 3asz_A 150 RGRSLEGVVAQYL 162 (211)
T ss_dssp SCCCHHHHHHHHH
T ss_pred hCCCHHHHHHHHH
Confidence 569999999853
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-18 Score=197.33 Aligned_cols=152 Identities=20% Similarity=0.323 Sum_probs=90.1
Q ss_pred cEEEEeEEEEeCC--eeeeeee----------eEEEECCcEEEEECCCCccHHHHHHHHHcCCCC-CccEEEEcCCC---
Q 006442 97 GVKLENISKSYKG--VTVLKDV----------TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVIKAKSN--- 160 (645)
Q Consensus 97 ~i~i~nls~~y~~--~~vL~~v----------sl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p-~~G~I~~~~~~--- 160 (645)
.+.++|+++.|+. +++++.+ +|+++. ++|||||||||||||++|+|+..| ++|.|.+.|..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 4789999999965 3355444 366665 999999999999999999999988 79998776532
Q ss_pred ----------ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhC
Q 006442 161 ----------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230 (645)
Q Consensus 161 ----------~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (645)
..|+|++|++.+++..||.+|+..+... ..
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~--------------~~-------------------------- 126 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA--------------IA-------------------------- 126 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH--------------HH--------------------------
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH--------------hc--------------------------
Confidence 3589999998887777888887421100 00
Q ss_pred ChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCC------CCCCCHHHHHHHHHHHcc
Q 006442 231 NLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEP------TNHLDLDTIEWLEGYLGK 304 (645)
Q Consensus 231 ~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEP------ts~LD~~~~~~l~~~L~~ 304 (645)
....++. ++++.++.+....|+++|+||| |++||+..+..+.+++++
T Consensus 127 ------------~~~~~~s---------------~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~ 179 (608)
T 3szr_A 127 ------------GEGMGIS---------------HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKK 179 (608)
T ss_dssp ------------CSSSCCC---------------SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHH
T ss_pred ------------CCccccc---------------hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHH
Confidence 0001111 1122233333458999999999 999999998877766532
Q ss_pred -----CCCeEEEEecCHHH
Q 006442 305 -----QDVPMVIISHDRAF 318 (645)
Q Consensus 305 -----~g~tvIivsHd~~~ 318 (645)
.+.++++++|+.+.
T Consensus 180 ~l~~~~~iil~vvt~~~d~ 198 (608)
T 3szr_A 180 YIQRQETISLVVVPSNVDI 198 (608)
T ss_dssp HTTSSSCCEEEEEESSSCT
T ss_pred HHhcCCCCceEEEeccchh
Confidence 46788999999763
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-16 Score=156.71 Aligned_cols=159 Identities=17% Similarity=0.174 Sum_probs=97.3
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCC-----CCCeeEEEECc-------eec--c
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE-----KPRGGEVLLGE-------HNV--L 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~-----~p~~G~i~~~g-------~~~--~ 489 (645)
+|+++|+++.|+ ..++++ |.+.+|.+++|+|+||||||||++.|+|.. .|+.|++...+ ..+ .
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt 79 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDL 79 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEEC
T ss_pred chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEEC
Confidence 488999999997 467877 889999999999999999999999999998 78888764311 111 1
Q ss_pred cchhccchhhcCCCCC-----CHHHHHHh---hh----------cccc--HHHHHHHHhhcCCChhhhccCcCcCCHhHH
Q 006442 490 PNYFEQNQAEALDLDK-----TVLETVAE---AA----------EDWR--IDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549 (645)
Q Consensus 490 ~~~~~q~~~~~l~~~~-----tv~e~v~~---~~----------~~~~--~~~~~~~L~~~~l~~~~~~~~~~~LSgGqk 549 (645)
+++.... ..... .....+.. .. .... ..++..++...++..-....++..+|+|||
T Consensus 80 ~G~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~ 155 (210)
T 1pui_A 80 PGYGYAE----VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGAR 155 (210)
T ss_dssp CCCC----------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHH
T ss_pred cCCcccc----cCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhH
Confidence 1111000 00000 00001110 00 0011 224556666777653334677889999999
Q ss_pred HH-HHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc
Q 006442 550 AR-LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY 589 (645)
Q Consensus 550 qr-v~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~ 589 (645)
|| +..+++++.+|+++++|||||++|..+...+.+.|.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 156 KAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp HHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 99 89999999999999999999999999999999988754
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-17 Score=163.85 Aligned_cols=180 Identities=11% Similarity=0.093 Sum_probs=95.5
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCC-----CCCccEEEEcCC---CceEEEEec
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE-----EPDSGNVIKAKS---NMKIAFLSQ 168 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~-----~p~~G~I~~~~~---~~~i~~v~Q 168 (645)
+|+++|++|.|+ .+++++ |.+++|..++|+|+||||||||++.|+|.. .|+.|.+...+. ...+-+ -.
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l-~D 78 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRL-VD 78 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEE-EE
T ss_pred chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEE-EE
Confidence 489999999997 467877 899999999999999999999999999998 788887653210 001111 11
Q ss_pred cCccCC-CC--CHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchh
Q 006442 169 EFEVSM-SR--TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (645)
Q Consensus 169 ~~~~~~-~~--Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (645)
.|.... .. ...+.+ .. .+..+.+...... ..-++..+ .......+..+.+.+..
T Consensus 79 t~G~~~~~~~~~~~~~~----~~------~~~~~~~~~~~~~-~~~~v~d~------------~~~~~~~~~~~~~~~~~ 135 (210)
T 1pui_A 79 LPGYGYAEVPEEMKRKW----QR------ALGEYLEKRQSLQ-GLVVLMDI------------RHPLKDLDQQMIEWAVD 135 (210)
T ss_dssp CCCCC------CCHHHH----HH------HHHHHHHHCTTEE-EEEEEEET------------TSCCCHHHHHHHHHHHH
T ss_pred CcCCcccccCHHHHHHH----HH------HHHHHHHhhhccc-EEEEEEEC------------CCCCchhHHHHHHHHHH
Confidence 121100 00 000100 00 0001110000000 00000000 00001112234444555
Q ss_pred cCCCcccccccCCCCChHHHHH-HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc
Q 006442 246 LGFTADDGDRLVASFSSGWQMR-MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (645)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqR-vaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~ 303 (645)
.+++.-....++..+|+||+|| +..+++++.+|.++++|||||++|...+..+.+.|.
T Consensus 136 ~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~ 194 (210)
T 1pui_A 136 SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLD 194 (210)
T ss_dssp TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHH
T ss_pred cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHH
Confidence 6665333355578899999999 899999999999999999999999999998887764
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=6.1e-17 Score=188.57 Aligned_cols=157 Identities=13% Similarity=0.068 Sum_probs=99.6
Q ss_pred cEEEEeEEEEe-----CCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC-CCccEEEEcCCCceEEEEeccC
Q 006442 97 GVKLENISKSY-----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-PDSGNVIKAKSNMKIAFLSQEF 170 (645)
Q Consensus 97 ~i~i~nls~~y-----~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~-p~~G~I~~~~~~~~i~~v~Q~~ 170 (645)
.|.+++..--. ++..+++|++|+ ++|++++|+||||||||||||+|+|+.. ...|... ......+++++|
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~v-pa~~~~i~~~~~-- 652 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYV-PAQKVEIGPIDR-- 652 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCB-SSSEEEECCCCE--
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCccc-chhcccceeHHH--
Confidence 47777653222 345699999999 9999999999999999999999999742 2334211 111224555554
Q ss_pred ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCc
Q 006442 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (645)
Q Consensus 171 ~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~ 250 (645)
++...++.+++.
T Consensus 653 -i~~~~~~~d~l~------------------------------------------------------------------- 664 (800)
T 1wb9_A 653 -IFTRVGAADDLA------------------------------------------------------------------- 664 (800)
T ss_dssp -EEEEEC-------------------------------------------------------------------------
T ss_pred -HHhhCCHHHHHH-------------------------------------------------------------------
Confidence 223334444321
Q ss_pred ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH----HHHHHcc-CCCeEEEEecCHHHHHhhcCe
Q 006442 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEW----LEGYLGK-QDVPMVIISHDRAFLDQLCTK 325 (645)
Q Consensus 251 ~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~----l~~~L~~-~g~tvIivsHd~~~l~~~~d~ 325 (645)
....++|+|+++ ++.+...+.+|+++|||||++|+|+..... +.+.+.+ .|.++|++||+.+.. .+||+
T Consensus 665 ----~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d~ 738 (800)
T 1wb9_A 665 ----SGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT-QLPEK 738 (800)
T ss_dssp ---------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHH
T ss_pred ----hhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-HHhhh
Confidence 112456777764 444455689999999999988888765433 3344444 589999999999765 47776
Q ss_pred EEEEcC
Q 006442 326 IVETEM 331 (645)
Q Consensus 326 i~~l~~ 331 (645)
+..+.+
T Consensus 739 ~~~v~n 744 (800)
T 1wb9_A 739 MEGVAN 744 (800)
T ss_dssp STTEEE
T ss_pred hhceEE
Confidence 533333
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.1e-15 Score=142.01 Aligned_cols=95 Identities=19% Similarity=0.307 Sum_probs=78.9
Q ss_pred hccCcCcCCHhHHHHHHHHHHHc----cCCCeEEeeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhCCEE
Q 006442 537 LDRKVSLLSGGEKARLAFCKFMV----KPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRV 610 (645)
Q Consensus 537 ~~~~~~~LSgGqkqrv~lAral~----~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~d~v 610 (645)
..+.+..||||||||++||++++ .+|+++||||||++||+.+...+.+.|+++. .++|+|||+.... .+||++
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~i 136 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADKI 136 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEE
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCEE
Confidence 35667889999999999999997 4579999999999999999999999998763 5899999998655 679999
Q ss_pred EEE--eCCeEEeeCCChhHHHHHH
Q 006442 611 VEV--KGSNLQDYAGDYNQVQSLW 632 (645)
Q Consensus 611 ~~l--~~g~i~~~~~~~~~~~~~~ 632 (645)
+.+ .+|.......+.+++.+..
T Consensus 137 ~~v~~~~g~s~~~~~~~~~~~~~~ 160 (173)
T 3kta_B 137 IGVSMRDGVSKVVSLSLEKAMKIL 160 (173)
T ss_dssp EEEEEETTEEEEEECCHHHHHHHH
T ss_pred EEEEecCCEEEEEEEEcHHHHHHH
Confidence 866 4787666667777765433
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-16 Score=169.97 Aligned_cols=139 Identities=16% Similarity=0.164 Sum_probs=97.9
Q ss_pred EeEEEEeC--CeeeeeeeeE-------EEECCcEEEEECCCCccHHHHHHHHHcCCCCC-ccEEEEcCCCce------EE
Q 006442 101 ENISKSYK--GVTVLKDVTW-------EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKAKSNMK------IA 164 (645)
Q Consensus 101 ~nls~~y~--~~~vL~~vsl-------~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~-~G~I~~~~~~~~------i~ 164 (645)
.+++++|- ..+.|+++.+ .+.+|++++|+||||||||||+++|+|+++|+ .|.|........ .+
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~ 171 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKC 171 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSS
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcccc
Confidence 45666662 2346667665 67888999999999999999999999999987 566543211110 01
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
+++|..
T Consensus 172 ~v~q~~-------------------------------------------------------------------------- 177 (356)
T 3jvv_A 172 LVNQRE-------------------------------------------------------------------------- 177 (356)
T ss_dssp EEEEEE--------------------------------------------------------------------------
T ss_pred ceeeee--------------------------------------------------------------------------
Confidence 111110
Q ss_pred hcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcC
Q 006442 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCT 324 (645)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d 324 (645)
.+ ...++-.+ +||+||.++|++||+|||| |.++.+.+.+.. ..|.|||+++|+.+.+ ..||
T Consensus 178 -~~---------~~~~~~~~----~La~aL~~~PdvillDEp~---d~e~~~~~~~~~-~~G~~vl~t~H~~~~~-~~~d 238 (356)
T 3jvv_A 178 -VH---------RDTLGFSE----ALRSALREDPDIILVGEMR---DLETIRLALTAA-ETGHLVFGTLHTTSAA-KTID 238 (356)
T ss_dssp -BT---------TTBSCHHH----HHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEESCSSHH-HHHH
T ss_pred -ec---------cccCCHHH----HHHHHhhhCcCEEecCCCC---CHHHHHHHHHHH-hcCCEEEEEEccChHH-HHHH
Confidence 00 01122222 9999999999999999999 888877766654 4599999999999988 6799
Q ss_pred eEEEEcCc
Q 006442 325 KIVETEMG 332 (645)
Q Consensus 325 ~i~~l~~G 332 (645)
|++.+..|
T Consensus 239 Rli~l~~~ 246 (356)
T 3jvv_A 239 RVVDVFPA 246 (356)
T ss_dssp HHHHTSCH
T ss_pred HHhhhcCc
Confidence 99877443
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.2e-15 Score=141.94 Aligned_cols=92 Identities=16% Similarity=0.287 Sum_probs=76.3
Q ss_pred ccccCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcCeE
Q 006442 253 GDRLVASFSSGWQMRMSLGKILL----QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKI 326 (645)
Q Consensus 253 ~~~~~~~LSGGqkqRvaLAraL~----~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~d~i 326 (645)
..+.+..||||||||++||++|+ .+|+++||||||++||+.++..+.++|++ .+.++|+|||+...+ ..||++
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~i 136 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADKI 136 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEE
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCEE
Confidence 45667899999999999999997 45799999999999999999999998853 457899999998765 689999
Q ss_pred EEE--cCceeEEeccChHHHH
Q 006442 327 VET--EMGVSRTYEGNYSQYV 345 (645)
Q Consensus 327 ~~l--~~G~~~~~~g~~~~~~ 345 (645)
+.+ ++|....+..++..+.
T Consensus 137 ~~v~~~~g~s~~~~~~~~~~~ 157 (173)
T 3kta_B 137 IGVSMRDGVSKVVSLSLEKAM 157 (173)
T ss_dssp EEEEEETTEEEEEECCHHHHH
T ss_pred EEEEecCCEEEEEEEEcHHHH
Confidence 854 5788777767665543
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-17 Score=179.53 Aligned_cols=159 Identities=13% Similarity=0.128 Sum_probs=97.0
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCcc--EEEEcC-C---CceEEEEecc
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG--NVIKAK-S---NMKIAFLSQE 169 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G--~I~~~~-~---~~~i~~v~Q~ 169 (645)
..|.++|++++|+++.++++++|+| +|+|+||||||||+++|+|...+..| .+.+.. . ...++|++|+
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~ 83 (418)
T 2qag_C 10 GYVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE 83 (418)
T ss_dssp -----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC---
T ss_pred CcEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEec
Confidence 3589999999999888999999998 99999999999999999999875444 221111 1 1247888888
Q ss_pred CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCC
Q 006442 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (645)
Q Consensus 170 ~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (645)
+.+...+||+|++..... .. .. ..+. .+...+.
T Consensus 84 ~~~~~~Ltv~Dt~g~~~~--~~-------------~~-~~~~----------------------~i~~~i~--------- 116 (418)
T 2qag_C 84 GGVQLLLTIVDTPGFGDA--VD-------------NS-NCWQ----------------------PVIDYID--------- 116 (418)
T ss_dssp ---CEEEEEEECC---------------------------CH----------------------HHHHHHH---------
T ss_pred CCcccceeeeechhhhhh--cc-------------ch-hhHH----------------------HHHHHHH---------
Confidence 776667788777532100 00 00 0000 0000010
Q ss_pred cccccccCCCCChHHHHHHHHHHHHccCCC---EEEEeCCC-CCCCHHHHHHHHHHHccCCCeEEEEecCHH
Q 006442 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPD---LLLLDEPT-NHLDLDTIEWLEGYLGKQDVPMVIISHDRA 317 (645)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRvaLAraL~~~p~---iLLLDEPt-s~LD~~~~~~l~~~L~~~g~tvIivsHd~~ 317 (645)
..++.+++||++|||+++.+|+ +|++|||| .+||+....++..+ .. +.+||+|.|..+
T Consensus 117 --------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L-~~-~v~iIlVinK~D 178 (418)
T 2qag_C 117 --------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-HE-KVNIIPLIAKAD 178 (418)
T ss_dssp --------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHH-TT-TSEEEEEEESTT
T ss_pred --------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHH-hc-cCcEEEEEEccc
Confidence 1234466779999999999999 99999999 69999887666554 43 788888888654
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-15 Score=157.09 Aligned_cols=146 Identities=16% Similarity=0.160 Sum_probs=91.1
Q ss_pred EECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCC----CceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHH
Q 006442 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS----NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (645)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~----~~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~ 195 (645)
+++|++++|+||||||||||++.|++.+. .|.+.. +. ...+.|+..+.. . +.+.. +
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~-g~~~~~~~~v~~~~~e~~------~-~~~~~----------r 86 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLL-EVGELPTGPVIYLPAEDP------P-TAIHH----------R 86 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTT-CCCCCCCCCEEEEESSSC------H-HHHHH----------H
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcC-CCccCCCccEEEEECCCC------H-HHHHH----------H
Confidence 78999999999999999999999998654 454422 11 235777765421 1 11100 0
Q ss_pred HHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHc
Q 006442 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (645)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~ 275 (645)
+.. +.. .+. .....++++.+++. +..++++..||+||+|++ ++++
T Consensus 87 ~~~----~g~-----------------------~~~----~~~~~~~~~~l~l~-~~~~~~~~~ls~g~~~~i---~~l~ 131 (279)
T 1nlf_A 87 LHA----LGA-----------------------HLS----AEERQAVADGLLIQ-PLIGSLPNIMAPEWFDGL---KRAA 131 (279)
T ss_dssp HHH----HHT-----------------------TSC----HHHHHHHHHHEEEC-CCTTSCCCTTSHHHHHHH---HHHH
T ss_pred HHH----HHh-----------------------hcC----hhhhhhccCceEEe-ecCCCCcccCCHHHHHHH---HHhc
Confidence 000 000 000 01122334455554 345677899999998765 6888
Q ss_pred cCCCEEEEeCCCC--CCCHHHH---HHHHHH----HccCCCeEEEEecCHHHHH
Q 006442 276 QDPDLLLLDEPTN--HLDLDTI---EWLEGY----LGKQDVPMVIISHDRAFLD 320 (645)
Q Consensus 276 ~~p~iLLLDEPts--~LD~~~~---~~l~~~----L~~~g~tvIivsHd~~~l~ 320 (645)
.+|+++|+||||+ ++|.... ..+... .++.|+|||+++|+.....
T Consensus 132 ~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 132 EGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAA 185 (279)
T ss_dssp TTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-----
T ss_pred CCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCccc
Confidence 8999999999999 9997433 444333 3456999999999987654
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-16 Score=168.59 Aligned_cols=125 Identities=18% Similarity=0.226 Sum_probs=86.2
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC-eeEEEECceecccchhccchhhcCCCCCCHHHHHHhhhccccHHHHH
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-GGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIK 524 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~-~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~ 524 (645)
.+.+|++++|+||||||||||+++|+|+++|+ +|.|...+.++. +...+.. .. ....
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e--~~~~~~~-~~-------------v~q~------ 176 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE--FVHESKK-CL-------------VNQR------ 176 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC--SCCCCSS-SE-------------EEEE------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH--hhhhccc-cc-------------eeee------
Confidence 67889999999999999999999999999887 566654332211 1100000 00 0000
Q ss_pred HHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHH
Q 006442 525 GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVK 604 (645)
Q Consensus 525 ~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~~tvi~vsHd~~~i~ 604 (645)
......++..+ +||+||.++|++|++|||| |.++.+.+.++.. .+.|||+++|+.+.+
T Consensus 177 -------------~~~~~~~~~~~----~La~aL~~~PdvillDEp~---d~e~~~~~~~~~~-~G~~vl~t~H~~~~~- 234 (356)
T 3jvv_A 177 -------------EVHRDTLGFSE----ALRSALREDPDIILVGEMR---DLETIRLALTAAE-TGHLVFGTLHTTSAA- 234 (356)
T ss_dssp -------------EBTTTBSCHHH----HHHHHTTSCCSEEEESCCC---SHHHHHHHHHHHH-TTCEEEEEESCSSHH-
T ss_pred -------------eeccccCCHHH----HHHHHhhhCcCEEecCCCC---CHHHHHHHHHHHh-cCCEEEEEEccChHH-
Confidence 00001122222 9999999999999999999 7888776666543 377999999999988
Q ss_pred hhCCEEEEEe
Q 006442 605 QIVNRVVEVK 614 (645)
Q Consensus 605 ~~~d~v~~l~ 614 (645)
..+||++.|.
T Consensus 235 ~~~dRli~l~ 244 (356)
T 3jvv_A 235 KTIDRVVDVF 244 (356)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHhhhc
Confidence 6688887764
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-16 Score=164.26 Aligned_cols=158 Identities=16% Similarity=0.095 Sum_probs=98.5
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc----------------chhccchhhcCCCCCCHHHHHH
Q 006442 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP----------------NYFEQNQAEALDLDKTVLETVA 512 (645)
Q Consensus 449 ~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~----------------~~~~q~~~~~l~~~~tv~e~v~ 512 (645)
+|++++|+||||||||||+++|+|+++|++|+|.+.|.++.. +++.|. ..+++..++.+++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~--~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGP--EGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCC--TTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeC--CCCCHHHHHHHHHH
Confidence 689999999999999999999999999999999998877521 112221 22334456777775
Q ss_pred hhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCC--eEEeeCCCCCCCHHHHHHHHHHHHhcC
Q 006442 513 EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST--LLVLDEPTNHLDIPSKEMLEEAISEYK 590 (645)
Q Consensus 513 ~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~--lLlLDEPt~~LD~~s~~~l~~~l~~~~ 590 (645)
.+...... ..+++..|.. +.....++..++||++||||++.+|+ +|.|| |+++.+. ...+.++-+..+
T Consensus 179 ~~~~~~~d---~~llDt~G~~----~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~--~~~~~~~~~~~~ 248 (304)
T 1rj9_A 179 AMKARGYD---LLFVDTAGRL----HTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNG--LEQAKKFHEAVG 248 (304)
T ss_dssp HHHHHTCS---EEEECCCCCC----TTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHH--HHHHHHHHHHHC
T ss_pred HHHhCCCC---EEEecCCCCC----CchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHH--HHHHHHHHHHcC
Confidence 43211000 0012223331 12222345566999999999999999 66666 5555442 223333333457
Q ss_pred ceEEEEecCHHHHH---------hhCCEEEEEeCCeE
Q 006442 591 GTVITVSHDRYFVK---------QIVNRVVEVKGSNL 618 (645)
Q Consensus 591 ~tvi~vsHd~~~i~---------~~~d~v~~l~~g~i 618 (645)
.|+|+|||+..... .+.-.|.++..|+-
T Consensus 249 ~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge~ 285 (304)
T 1rj9_A 249 LTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEG 285 (304)
T ss_dssp CSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSSS
T ss_pred CcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCCC
Confidence 79999999854321 11246666666653
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.57 E-value=4.1e-16 Score=165.79 Aligned_cols=155 Identities=15% Similarity=0.157 Sum_probs=88.2
Q ss_pred eeeeee-eEEEECCcEEEEECCCCccHHHHHHHHHcCC--CCCc----cE-EEEcCCCceEEEEeccCccCCCCCHHHHH
Q 006442 111 TVLKDV-TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDS----GN-VIKAKSNMKIAFLSQEFEVSMSRTVREEF 182 (645)
Q Consensus 111 ~vL~~v-sl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~--~p~~----G~-I~~~~~~~~i~~v~Q~~~~~~~~Tv~eni 182 (645)
+.|+.+ ++.|++|++++|+||||||||||++.|+|.. +|++ |. |++++.. .+ . .+.+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~----------~~----~-~~~i 182 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN----------TF----R-PERI 182 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS----------CC----C-HHHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC----------CC----C-HHHH
Confidence 345554 6899999999999999999999999999998 6776 45 4444321 10 0 1111
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCCh
Q 006442 183 MSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262 (645)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSG 262 (645)
... .... .+.. . .+++.+-+ .. ..-|.
T Consensus 183 ~~i-----------------~q~~----------------------~~~~---~----~v~~ni~~----~~---~~~~~ 209 (349)
T 1pzn_A 183 REI-----------------AQNR----------------------GLDP---D----EVLKHIYV----AR---AFNSN 209 (349)
T ss_dssp HHH-----------------HHTT----------------------TCCH---H----HHGGGEEE----EE---CCSHH
T ss_pred HHH-----------------HHHc----------------------CCCH---H----HHhhCEEE----Ee---cCChH
Confidence 100 0000 0000 0 11111111 00 01257
Q ss_pred HHHHHHHHHHHHc-------cCCCEEEEeCCCCCCCHHH------------HHHHHHH----HccCCCeEEEEecCHHHH
Q 006442 263 GWQMRMSLGKILL-------QDPDLLLLDEPTNHLDLDT------------IEWLEGY----LGKQDVPMVIISHDRAFL 319 (645)
Q Consensus 263 GqkqRvaLAraL~-------~~p~iLLLDEPts~LD~~~------------~~~l~~~----L~~~g~tvIivsHd~~~l 319 (645)
+|+|++.++++++ .+|++||+||||++||+.. ...+... .++.++|||+++|.....
T Consensus 210 ~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~ 289 (349)
T 1pzn_A 210 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARP 289 (349)
T ss_dssp HHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---
T ss_pred HHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccccc
Confidence 8888999998888 6899999999999999852 2233332 345799999999998755
Q ss_pred HhhcCeEEEEcCce
Q 006442 320 DQLCTKIVETEMGV 333 (645)
Q Consensus 320 ~~~~d~i~~l~~G~ 333 (645)
..+.........|.
T Consensus 290 ~~~~~~~~~~~~G~ 303 (349)
T 1pzn_A 290 DAFFGDPTRPIGGH 303 (349)
T ss_dssp ------------CC
T ss_pred ccccCCccccCCcc
Confidence 43333333344443
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.56 E-value=7.6e-15 Score=151.06 Aligned_cols=144 Identities=15% Similarity=0.182 Sum_probs=92.0
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----cchhccchhhcCCCCCCHH---HHHHhhhccc
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----PNYFEQNQAEALDLDKTVL---ETVAEAAEDW 518 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----~~~~~q~~~~~l~~~~tv~---e~v~~~~~~~ 518 (645)
.|++|++++|+||||||||||++.|++.+. .|.+.+ |.+.. ..|+. .+.+.. ..+.......
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~-g~~~~~~~~v~~~~--------~e~~~~~~~~r~~~~g~~~ 94 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLL-EVGELPTGPVIYLP--------AEDPPTAIHHRLHALGAHL 94 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTT-CCCCCCCCCEEEEE--------SSSCHHHHHHHHHHHHTTS
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcC-CCccCCCccEEEEE--------CCCCHHHHHHHHHHHHhhc
Confidence 378999999999999999999999998654 344322 22110 11211 112221 1111111122
Q ss_pred cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCC--CCCHHHH---HHHHHHHH----hc
Q 006442 519 RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN--HLDIPSK---EMLEEAIS----EY 589 (645)
Q Consensus 519 ~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~--~LD~~s~---~~l~~~l~----~~ 589 (645)
.......+++.+.+. +..++++..||+||++++ ++++.+|+++|+||||+ ++|.... ..+.+.|. +.
T Consensus 95 ~~~~~~~~~~~l~l~-~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~ 170 (279)
T 1nlf_A 95 SAEERQAVADGLLIQ-PLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADT 170 (279)
T ss_dssp CHHHHHHHHHHEEEC-CCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhhccCceEEe-ecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHc
Confidence 333455667777764 445778999999998765 67888999999999999 9997544 44444444 34
Q ss_pred CceEEEEecCHHHHH
Q 006442 590 KGTVITVSHDRYFVK 604 (645)
Q Consensus 590 ~~tvi~vsHd~~~i~ 604 (645)
+.|||+|+|+.....
T Consensus 171 g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 171 GCSIVFLHHASKGAA 185 (279)
T ss_dssp CCEEEEEEEC-----
T ss_pred CCEEEEEecCCCccc
Confidence 679999999988764
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.54 E-value=4.2e-16 Score=177.36 Aligned_cols=169 Identities=17% Similarity=0.213 Sum_probs=98.7
Q ss_pred EEEEEeeeeeeCC--eeceeee----------eEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-CeeEEEECceecc-
Q 006442 424 VVTIKNLEFGYED--RLLFNRA----------NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-RGGEVLLGEHNVL- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~--~~~l~~v----------sl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p-~~G~i~~~g~~~~- 489 (645)
.++++|+++.|++ +++++.+ +++++. +||+|||||||||||++|+|+..| ++|.|+++|.++.
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 5889999999975 3454444 366654 999999999999999999999988 7999999987741
Q ss_pred ------------cchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHH
Q 006442 490 ------------PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKF 557 (645)
Q Consensus 490 ------------~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAra 557 (645)
.+|.+|+ ..+.+..++.+++..... .+...+ . .+| ++++.++.+
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~--~~l~~~~tv~e~i~~~~~---------~~~~~~-------~---~~s---~~~i~l~i~ 142 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYE--IEISDASEVEKEINKAQN---------AIAGEG-------M---GIS---HELITLEIS 142 (608)
T ss_dssp EECSSSSCCEEEESCC-----CCCCCHHHHHTTHHHHHH---------HHHCSS-------S---CCC---SCCEEEEEE
T ss_pred ecCCccccceeEEeeeccc--ccCCCHHHHHHHHHHHHH---------HhcCCc-------c---ccc---hHHHHHHhc
Confidence 1233332 334455667776654321 111000 0 011 122333444
Q ss_pred HccCCCeEEeeCC------CCCCCHHHHHHHHHHHHhc-----CceEEEEecCHHHH--------Hhh----CCEEEEEe
Q 006442 558 MVKPSTLLVLDEP------TNHLDIPSKEMLEEAISEY-----KGTVITVSHDRYFV--------KQI----VNRVVEVK 614 (645)
Q Consensus 558 l~~~p~lLlLDEP------t~~LD~~s~~~l~~~l~~~-----~~tvi~vsHd~~~i--------~~~----~d~v~~l~ 614 (645)
....|+++|+||| |++||+..+..+.+++.++ ..++++++||++.+ ..+ ...|+++.
T Consensus 143 ~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlT 222 (608)
T 3szr_A 143 SRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILT 222 (608)
T ss_dssp ESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEE
T ss_pred CCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEec
Confidence 4568999999999 9999999999999999875 24889999997633 222 25677887
Q ss_pred CCeEE
Q 006442 615 GSNLQ 619 (645)
Q Consensus 615 ~g~i~ 619 (645)
++.++
T Consensus 223 K~Dlv 227 (608)
T 3szr_A 223 KPDLV 227 (608)
T ss_dssp CGGGS
T ss_pred chhhc
Confidence 75544
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.1e-14 Score=140.18 Aligned_cols=148 Identities=16% Similarity=0.106 Sum_probs=93.0
Q ss_pred ceeeeeE-EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECcee-cccchhccchhhcCCCCCCHHHHHHhhhc
Q 006442 439 LFNRANL-TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-VLPNYFEQNQAEALDLDKTVLETVAEAAE 516 (645)
Q Consensus 439 ~l~~vsl-~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~-~~~~~~~q~~~~~l~~~~tv~e~v~~~~~ 516 (645)
.|+.+.. .|++|++++|+||||||||||++.|++ ++..+.++++... +....+ .+ +....
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~~~~~~~~--------------~~-~~~~~- 69 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEGGFSPERL--------------VQ-MAETR- 69 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSCCCCHHHH--------------HH-HHHTT-
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCCCCCHHHH--------------HH-HHHhc-
Confidence 3444443 588999999999999999999999999 3333444443221 000000 00 00000
Q ss_pred cccHHHHHHHHhhcCCChhhhccCcCcCCHhH--HHHHHHHHHHccC-CCeEEeeCCCCCCCHHHH--------HHH---
Q 006442 517 DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGE--KARLAFCKFMVKP-STLLVLDEPTNHLDIPSK--------EML--- 582 (645)
Q Consensus 517 ~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGq--kqrv~lAral~~~-p~lLlLDEPt~~LD~~s~--------~~l--- 582 (645)
.+..+ ++++. ..+..+|+++ +++++.+++++.+ |+++|+||||+.+|.... ..+
T Consensus 70 ~~~~~---~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~ 137 (220)
T 2cvh_A 70 GLNPE---EALSR---------FILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQV 137 (220)
T ss_dssp TCCHH---HHHHH---------EEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHH
T ss_pred CCChH---HHhhc---------EEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHH
Confidence 01111 11221 1233455664 5678888899986 999999999999997432 222
Q ss_pred -HHHHHhcCceEEEEecCHH-------------HHHhhCCEEEEEeCC
Q 006442 583 -EEAISEYKGTVITVSHDRY-------------FVKQIVNRVVEVKGS 616 (645)
Q Consensus 583 -~~~l~~~~~tvi~vsHd~~-------------~i~~~~d~v~~l~~g 616 (645)
.++.++.+.|||+++|... .+..+||++++|+..
T Consensus 138 L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 138 LLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 2233345779999999865 677899999999753
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-15 Score=177.50 Aligned_cols=160 Identities=16% Similarity=0.103 Sum_probs=96.0
Q ss_pred EEEEEeeeeee-----CCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-CeeEEEECceecccchhccch
Q 006442 424 VVTIKNLEFGY-----EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-RGGEVLLGEHNVLPNYFEQNQ 497 (645)
Q Consensus 424 ~i~~~~v~~~y-----~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p-~~G~i~~~g~~~~~~~~~q~~ 497 (645)
.|.+++...-. +++.++++++|+ ++|++++|+||||||||||||+|+|+..+ ..|.. +.......+++.+
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~-vpa~~~~i~~~~~-- 652 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY-VPAQKVEIGPIDR-- 652 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC-BSSSEEEECCCCE--
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcc-cchhcccceeHHH--
Confidence 46676643221 346789999999 99999999999999999999999997422 11210 0000000011111
Q ss_pred hhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHH
Q 006442 498 AEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577 (645)
Q Consensus 498 ~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~ 577 (645)
+....++.++ .....+.+|+|+++ ++.+...+.+|+++||||||+|+|+.
T Consensus 653 ---i~~~~~~~d~--------------------------l~~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~ 702 (800)
T 1wb9_A 653 ---IFTRVGAADD--------------------------LASGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTY 702 (800)
T ss_dssp ---EEEEEC-------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSS
T ss_pred ---HHhhCCHHHH--------------------------HHhhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChh
Confidence 1111111111 12233457777765 44444568999999999998888876
Q ss_pred HHHHH-HHH---HHh-cCceEEEEecCHHHHHhhCCEEEEEeCCeE
Q 006442 578 SKEML-EEA---ISE-YKGTVITVSHDRYFVKQIVNRVVEVKGSNL 618 (645)
Q Consensus 578 s~~~l-~~~---l~~-~~~tvi~vsHd~~~i~~~~d~v~~l~~g~i 618 (645)
....+ ..+ +.+ .+.++|++|||.+++. +||++..+.++++
T Consensus 703 d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~-l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 703 DGLSLAWACAENLANKIKALTLFATHYFELTQ-LPEKMEGVANVHL 747 (800)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-HHHHSTTEEEEEE
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEeCCHHHHH-HhhhhhceEEEEE
Confidence 55443 333 334 3679999999998764 7877655555544
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.52 E-value=3e-15 Score=159.16 Aligned_cols=150 Identities=19% Similarity=0.264 Sum_probs=89.3
Q ss_pred eeee-eEEEecCcEEEEEcCCCCcHHHHHHHHHcCC--CCCe----eE-EEECceecc-c---chhccchhhcCCCCCCH
Q 006442 440 FNRA-NLTIERGEKTAIIGPNGCGKSTLLKLIMGLE--KPRG----GE-VLLGEHNVL-P---NYFEQNQAEALDLDKTV 507 (645)
Q Consensus 440 l~~v-sl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~--~p~~----G~-i~~~g~~~~-~---~~~~q~~~~~l~~~~tv 507 (645)
|+.+ ++.|++|++++|+||||||||||++.|++.. +|++ |. |++++.+.. + .++.|. ..++
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~--~~~~----- 192 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQN--RGLD----- 192 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHT--TTCC-----
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHH--cCCC-----
Confidence 4443 5789999999999999999999999999998 6766 57 788775431 1 111111 0110
Q ss_pred HHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHc-------cCCCeEEeeCCCCCCCHHH--
Q 006442 508 LETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-------KPSTLLVLDEPTNHLDIPS-- 578 (645)
Q Consensus 508 ~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~-------~~p~lLlLDEPt~~LD~~s-- 578 (645)
.. .+++.+.+. .. .-|.+|+|++.++++++ .+|++||+||||+++|+..
T Consensus 193 ------------~~---~v~~ni~~~-----~~--~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~ 250 (349)
T 1pzn_A 193 ------------PD---EVLKHIYVA-----RA--FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIG 250 (349)
T ss_dssp ------------HH---HHGGGEEEE-----EC--CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCS
T ss_pred ------------HH---HHhhCEEEE-----ec--CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcc
Confidence 00 122211110 01 12578888898888888 6899999999999999862
Q ss_pred ----------HHHHHHHH----HhcCceEEEEecCHHHHHhhCCEEEEEeCCeE
Q 006442 579 ----------KEMLEEAI----SEYKGTVITVSHDRYFVKQIVNRVVEVKGSNL 618 (645)
Q Consensus 579 ----------~~~l~~~l----~~~~~tvi~vsHd~~~i~~~~d~v~~l~~g~i 618 (645)
...+...| ++++.|||+++|+...+...++.......|++
T Consensus 251 ~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~ 304 (349)
T 1pzn_A 251 RGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHI 304 (349)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcce
Confidence 12333333 34567999999998765433333334444443
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.3e-14 Score=139.23 Aligned_cols=75 Identities=17% Similarity=0.145 Sum_probs=56.6
Q ss_pred CCCChHH--HHHHHHHHHHccC-CCEEEEeCCCCCCCHHHH--------HH----HHHHHccCCCeEEEEecCHH-----
Q 006442 258 ASFSSGW--QMRMSLGKILLQD-PDLLLLDEPTNHLDLDTI--------EW----LEGYLGKQDVPMVIISHDRA----- 317 (645)
Q Consensus 258 ~~LSGGq--kqRvaLAraL~~~-p~iLLLDEPts~LD~~~~--------~~----l~~~L~~~g~tvIivsHd~~----- 317 (645)
..+|+++ +++++.+++++.+ |+++|+||||+.+|+... .. |.++.++.++|||+++|...
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~ 162 (220)
T 2cvh_A 83 FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTE 162 (220)
T ss_dssp ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTS
T ss_pred EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCC
Confidence 3445554 5688888999986 999999999999997431 22 23333456899999999876
Q ss_pred --------HHHhhcCeEEEEcCc
Q 006442 318 --------FLDQLCTKIVETEMG 332 (645)
Q Consensus 318 --------~l~~~~d~i~~l~~G 332 (645)
.+..+||++++++..
T Consensus 163 ~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 163 MTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp SCCSCCCHHHHHTSSEEEEEEEC
T ss_pred ccccCCCcceeecCcEEEEEEEe
Confidence 677899999999643
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-14 Score=161.99 Aligned_cols=78 Identities=21% Similarity=0.201 Sum_probs=70.9
Q ss_pred ccCcCcC-CHhHHHHHHHHHHHccCC--CeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEE
Q 006442 538 DRKVSLL-SGGEKARLAFCKFMVKPS--TLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVE 612 (645)
Q Consensus 538 ~~~~~~L-SgGqkqrv~lAral~~~p--~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~ 612 (645)
.+++..| ||||||||+||+||+.+| ++|||||||+|||+.+...+.+.|+++ +.|||+||||++++. +|||+++
T Consensus 391 ~~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~ 469 (517)
T 4ad8_A 391 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYK 469 (517)
T ss_dssp CCBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEE
T ss_pred cccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEE
Confidence 4677888 999999999999999999 999999999999999999999999865 569999999999886 5999999
Q ss_pred EeCC
Q 006442 613 VKGS 616 (645)
Q Consensus 613 l~~g 616 (645)
|+++
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9654
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.1e-16 Score=167.66 Aligned_cols=157 Identities=15% Similarity=0.108 Sum_probs=91.8
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCee--EEEECcee-c---ccchhccc
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG--EVLLGEHN-V---LPNYFEQN 496 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G--~i~~~g~~-~---~~~~~~q~ 496 (645)
.+|+++|++++|+++.++++++|+| +|+|+||||||||+++|+|...+..| .+.++... + ..++..|.
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~ 83 (418)
T 2qag_C 10 GYVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE 83 (418)
T ss_dssp -----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC---
T ss_pred CcEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEec
Confidence 4699999999999889999999998 99999999999999999999875444 11111100 0 01222221
Q ss_pred hhhcCCCCCCHHHHHHhhhccccH---HHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCC---eEEeeCC
Q 006442 497 QAEALDLDKTVLETVAEAAEDWRI---DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST---LLVLDEP 570 (645)
Q Consensus 497 ~~~~l~~~~tv~e~v~~~~~~~~~---~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~---lLlLDEP 570 (645)
..+...++++|++.+....... ..+.+.++ . .++.+++||++|||+++.+|+ +|++|||
T Consensus 84 --~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~----------~---~~~~~l~qr~~IaRal~~d~~~~vlL~ldeP 148 (418)
T 2qag_C 84 --GGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYID----------S---KFEDYLNAESRVNRRQMPDNRVQCCLYFIAP 148 (418)
T ss_dssp -----CEEEEEEECC-----------CHHHHHHHH----------H---HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC
T ss_pred --CCcccceeeeechhhhhhccchhhHHHHHHHHH----------H---HHHHHHHHHHHHHHHhccCCCeeEEEEEecC
Confidence 1222334555554433211000 11111121 1 356677889999999999999 9999999
Q ss_pred C-CCCCHHHHHHHHHHHHhcCceEEEEecCHHH
Q 006442 571 T-NHLDIPSKEMLEEAISEYKGTVITVSHDRYF 602 (645)
Q Consensus 571 t-~~LD~~s~~~l~~~l~~~~~tvi~vsHd~~~ 602 (645)
| ++||+.....+.. |.. +.+||+|.|..+.
T Consensus 149 t~~~L~~~d~~~lk~-L~~-~v~iIlVinK~Dl 179 (418)
T 2qag_C 149 SGHGLKPLDIEFMKR-LHE-KVNIIPLIAKADT 179 (418)
T ss_dssp -CCSCCHHHHHHHHH-HTT-TSEEEEEEESTTS
T ss_pred cccCCCHHHHHHHHH-Hhc-cCcEEEEEEcccC
Confidence 9 6999887654443 433 5678888887654
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-15 Score=150.85 Aligned_cols=127 Identities=11% Similarity=0.131 Sum_probs=83.1
Q ss_pred EEEECCcEEEEECCCCccHHHHHHHHHcCCCC--CccEEEEcCCC------ceEEEEeccCccCCCCCHHHHHHHhhHHH
Q 006442 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP--DSGNVIKAKSN------MKIAFLSQEFEVSMSRTVREEFMSAFKEE 189 (645)
Q Consensus 118 l~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p--~~G~I~~~~~~------~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~ 189 (645)
-..++|++++|+||||||||||+++|+|+++| ..|.|.+.+.. ..++|++|++..+..+++..
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~--------- 81 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRD--------- 81 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTT---------
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcC---------
Confidence 45789999999999999999999999999986 68888775432 23677777643211110000
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHH
Q 006442 190 MEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269 (645)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRva 269 (645)
++++.+.+ . ..+.|-.+++
T Consensus 82 ---------------------------------------------------~f~E~~~~---~-----~~~yg~~~~~-- 100 (219)
T 1s96_A 82 ---------------------------------------------------AFLEHAEV---F-----GNYYGTSREA-- 100 (219)
T ss_dssp ---------------------------------------------------CEEEEEEE---T-----TEEEEEEHHH--
T ss_pred ---------------------------------------------------HHHHHHHH---H-----hccCCCCHHH--
Confidence 00000000 0 0011111222
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHh
Q 006442 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 270 LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~ 321 (645)
+..++..++++||| ||+.+...+.+.+. .+.||+++||+++.+.+
T Consensus 101 -v~~~l~~G~illLD-----LD~~~~~~i~~~l~-~~~tI~i~th~~~~l~~ 145 (219)
T 1s96_A 101 -IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-HARSIFILPPSKIELDR 145 (219)
T ss_dssp -HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-TCEEEEEECSSHHHHHH
T ss_pred -HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-CCEEEEEECCCHHHHHH
Confidence 34455668999999 99999999999887 58899999999999876
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=5.2e-15 Score=158.61 Aligned_cols=123 Identities=22% Similarity=0.278 Sum_probs=91.0
Q ss_pred eeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCC-ccEEEEcCCCc------eEEEEeccCccCCCCCHHHHHHH
Q 006442 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKAKSNM------KIAFLSQEFEVSMSRTVREEFMS 184 (645)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~-~G~I~~~~~~~------~i~~v~Q~~~~~~~~Tv~eni~~ 184 (645)
+|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|...+.+. .++|++|.
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~--------------- 189 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQR--------------- 189 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEE---------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEee---------------
Confidence 566665 7899999999999999999999999999997 89986543221 11222221
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHH
Q 006442 185 AFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264 (645)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGq 264 (645)
.+|+. +..|
T Consensus 190 ------------------------------------------------------------~~g~~-------~~~~---- 198 (372)
T 2ewv_A 190 ------------------------------------------------------------EVGED-------TKSF---- 198 (372)
T ss_dssp ------------------------------------------------------------EBTTT-------BSCS----
T ss_pred ------------------------------------------------------------ecCCC-------HHHH----
Confidence 11221 2344
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEE
Q 006442 265 QMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVET 329 (645)
Q Consensus 265 kqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~i~~l 329 (645)
+.+|+++|..+|++|++|||+ |+++...+.+.. ..|.+|+.++|+.+ +..+++|++.+
T Consensus 199 --~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~-~~g~~vi~t~H~~~-~~~~~~rl~~l 256 (372)
T 2ewv_A 199 --ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHRIVDI 256 (372)
T ss_dssp --HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-TTTCEEEECCCCCS-HHHHHHHHHHT
T ss_pred --HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHH-hcCCEEEEEECcch-HHHHHHHHHHh
Confidence 469999999999999999999 888766555544 45889999999966 66778887655
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.9e-17 Score=175.84 Aligned_cols=164 Identities=13% Similarity=0.080 Sum_probs=97.3
Q ss_pred eeeeeeEEEEC--CcEEEEECCCCccHHHHHHHHHcCCCCCc----cEEEEcCCCceEEEEeccCccCCCCCHHHHHHHh
Q 006442 112 VLKDVTWEVKK--GEKVGLVGVNGAGKTTQLRIIAGQEEPDS----GNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSA 185 (645)
Q Consensus 112 vL~~vsl~i~~--Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~----G~I~~~~~~~~i~~v~Q~~~~~~~~Tv~eni~~~ 185 (645)
+.+.|+++|.+ |++++|+|+||||||||+++|+|+++|++ |+|.+.+... ..+. ....... +++...
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~-----~~~~-~~~~~~~-~~I~~~ 229 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLG-----GDEQ-AMQYSDY-PQMALG 229 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSS-----SCTT-SSCTTTH-HHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcC-----CCcc-cCChhHH-HHHHHH
Confidence 35679999999 99999999999999999999999999998 7766531100 0010 0111122 333221
Q ss_pred hHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHH
Q 006442 186 FKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265 (645)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqk 265 (645)
+... . . . ...+.+-+..++ ....+..+..+|+|++
T Consensus 230 ~q~~-------~--~--~--------------------------------~~t~~~nl~~~~--~~~~~~~~~~~~~~~~ 264 (365)
T 1lw7_A 230 HQRY-------I--D--Y--------------------------------AVRHSHKIAFID--TDFITTQAFCIQYEGK 264 (365)
T ss_dssp HHHH-------H--H--H--------------------------------HHHHCSSEEEES--SCHHHHHHHHHHHHSC
T ss_pred HHHH-------H--H--H--------------------------------HHhccCCEEEEe--CCchHHHHHHHHHcCC
Confidence 1000 0 0 0 000000011111 1112223445677888
Q ss_pred HHHHHHHHHc-cCCCEEEEeC---CC------CCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhhcCeEEE
Q 006442 266 MRMSLGKILL-QDPDLLLLDE---PT------NHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCTKIVE 328 (645)
Q Consensus 266 qRvaLAraL~-~~p~iLLLDE---Pt------s~LD~~~~~~l~~~L----~~~g~tvIivsHd~~~l~~~~d~i~~ 328 (645)
|+..+++++. .+|+++|||| |+ .++|+..+..+.+.| ++.+.+||+++|. ....++++++..
T Consensus 265 ~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~ 340 (365)
T 1lw7_A 265 AHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAV 340 (365)
T ss_dssp CCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHH
T ss_pred CCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHH
Confidence 8888888875 6999999999 65 589999888887776 3458899999986 344445554433
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.46 E-value=6.9e-16 Score=149.10 Aligned_cols=132 Identities=15% Similarity=0.095 Sum_probs=81.2
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc--------eEEEEeccCccCCCCCHHHHHHHhhHHHH
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQEFEVSMSRTVREEFMSAFKEEM 190 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~--------~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~ 190 (645)
.+++|++++|+||||||||||+++|+|. ++.|.|.+++... .++|++|.+. +..++.+|+.....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~--- 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG--- 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH---
Confidence 5789999999999999999999999998 7889998875421 1344444322 22344444421000
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccc--cccCCCCChHHHHHH
Q 006442 191 EIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG--DRLVASFSSGWQMRM 268 (645)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~--~~~~~~LSGGqkqRv 268 (645)
.+ ..... .. .++.++..+++. ... +.++..+|+|++||+
T Consensus 78 -------~~---~~~~~------------------------~~----~~~~~~~~~~l~-~~~~~~~~~~~ls~~~~~~v 118 (191)
T 1zp6_A 78 -------RY---AKEGY------------------------FV----ILDGVVRPDWLP-AFTALARPLHYIVLRTTAAE 118 (191)
T ss_dssp -------HH---HHTSC------------------------EE----EECSCCCTTTTH-HHHTTCSCEEEEEEECCHHH
T ss_pred -------HH---hccCC------------------------eE----EEeccCcHHHHH-HHHhcCCCeEEEEecCCHHH
Confidence 00 00000 00 000011111111 111 334578999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc
Q 006442 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK 304 (645)
Q Consensus 269 aLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~ 304 (645)
++||++..+|+++ +|+...+.+.+.++.
T Consensus 119 ~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~ 146 (191)
T 1zp6_A 119 AIERCLDRGGDSL--------SDPLVVADLHSQFAD 146 (191)
T ss_dssp HHHHHHTTCTTSC--------CCHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCcc--------CCHHHHHHHHHHHhc
Confidence 9999999999876 688888888877754
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-15 Score=145.35 Aligned_cols=149 Identities=14% Similarity=0.161 Sum_probs=93.0
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cchhccchhhcCCCCCCHHHHHHhhhcc
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQNQAEALDLDKTVLETVAEAAED 517 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~q~~~~~l~~~~tv~e~v~~~~~~ 517 (645)
.+++|++++|+|+||||||||+++|+|. |..|.|.+++.++. .+|+.|... ...++.+++......
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~----~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ----QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH----HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh----hhHHHHHHHHHHHHH
Confidence 5789999999999999999999999998 77899999886531 123333211 134566666442210
Q ss_pred ccH----HHHHHHHhhcCCChhhh--ccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcC-
Q 006442 518 WRI----DDIKGLLGRCNFKADML--DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK- 590 (645)
Q Consensus 518 ~~~----~~~~~~L~~~~l~~~~~--~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~- 590 (645)
... ..+...+..+++ .... +.++..+|+|++|+++++|++.++|+++ +|+...+.+.+.+..+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~ 149 (191)
T 1zp6_A 79 YAKEGYFVILDGVVRPDWL-PAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGA 149 (191)
T ss_dssp HHHTSCEEEECSCCCTTTT-HHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGG
T ss_pred HhccCCeEEEeccCcHHHH-HHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCc
Confidence 000 000011111222 1121 3456789999999999999999999886 68888888888776542
Q ss_pred -ceEEEEecCHHHHHhhCCEE
Q 006442 591 -GTVITVSHDRYFVKQIVNRV 610 (645)
Q Consensus 591 -~tvi~vsHd~~~i~~~~d~v 610 (645)
..+++.|++. .+.+++++|
T Consensus 150 ~~~~~i~t~~~-~~~~~~~~i 169 (191)
T 1zp6_A 150 FEHHVLPVSGK-DTDQALQSA 169 (191)
T ss_dssp GGGGEEECTTC-CTTTTTTTT
T ss_pred ccccEEECCCC-CHHHHHHHH
Confidence 2344555432 233344443
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.8e-15 Score=157.66 Aligned_cols=144 Identities=12% Similarity=0.114 Sum_probs=103.8
Q ss_pred EEEeEEEE---eCC--eeee---------eeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----
Q 006442 99 KLENISKS---YKG--VTVL---------KDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---- 160 (645)
Q Consensus 99 ~i~nls~~---y~~--~~vL---------~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~---- 160 (645)
++++++|+ |+. .++| +++||.|++|+.++|+||||||||||+++|+|+++|++|.|.+++..
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~ 216 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFL 216 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCc
Confidence 66778887 753 2355 99999999999999999999999999999999999999999987532
Q ss_pred ----ceEEEEe-ccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcH
Q 006442 161 ----MKIAFLS-QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (645)
Q Consensus 161 ----~~i~~v~-Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (645)
..++|++ |++.
T Consensus 217 ~~~~~~v~~v~~q~~~---------------------------------------------------------------- 232 (361)
T 2gza_A 217 PDHPNHVHLFYPSEAK---------------------------------------------------------------- 232 (361)
T ss_dssp TTCSSEEEEECC--------------------------------------------------------------------
T ss_pred cccCCEEEEeecCccc----------------------------------------------------------------
Confidence 1234443 2211
Q ss_pred HHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecC
Q 006442 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHD 315 (645)
Q Consensus 236 ~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd 315 (645)
..++++..+|..|+.++..+|+.+++|||.. .+..+.+ +.+..-..|++.++|.
T Consensus 233 ----------------------~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---~~~~~~l-~~l~~g~~~~l~t~H~ 286 (361)
T 2gza_A 233 ----------------------EEENAPVTAATLLRSCLRMKPTRILLAELRG---GEAYDFI-NVAASGHGGSITSCHA 286 (361)
T ss_dssp ----------------------------CCHHHHHHHHTTSCCSEEEESCCCS---THHHHHH-HHHHTTCCSCEEEEEC
T ss_pred ----------------------cccccccCHHHHHHHHHhcCCCEEEEcCchH---HHHHHHH-HHHhcCCCeEEEEECC
Confidence 0113444578888889999999999999985 3333333 3333334578999999
Q ss_pred HHHHHhhcCeEEEEcCce
Q 006442 316 RAFLDQLCTKIVETEMGV 333 (645)
Q Consensus 316 ~~~l~~~~d~i~~l~~G~ 333 (645)
.. ....++|++.+..+.
T Consensus 287 ~~-~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 287 GS-CELTFERLALMVLQN 303 (361)
T ss_dssp SS-HHHHHHHHHHHHTTS
T ss_pred CC-HHHHHHHHHHHHhcc
Confidence 65 777899998887653
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-14 Score=157.15 Aligned_cols=178 Identities=15% Similarity=0.082 Sum_probs=104.7
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcE--EEEECCCCccHHHHHHHHHcCCCCCccEEEEc---C-CCceEEEEeccCc
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEK--VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA---K-SNMKIAFLSQEFE 171 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~--~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~---~-~~~~i~~v~Q~~~ 171 (645)
+++++ +++|++.+ |+++||+|++|++ ++|+|+||||||||+++|+|..- .|..... + ....++|++|++.
T Consensus 17 l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q~~~ 92 (427)
T 2qag_B 17 VPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQESN 92 (427)
T ss_dssp CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC--
T ss_pred EEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEeecCc
Confidence 67777 89998888 9999999999999 99999999999999999999841 2221110 0 1125999999987
Q ss_pred cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhc-CCCc
Q 006442 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL-GFTA 250 (645)
Q Consensus 172 ~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l-gl~~ 250 (645)
+++.+||.||+..+... .... .+..+.. .+...+.++|... ++..
T Consensus 93 l~~~ltv~D~~~~g~~~--~~~~--------------~~~~i~~------------------~i~~q~~~~L~e~~~i~r 138 (427)
T 2qag_B 93 VRLKLTIVSTVGFGDQI--NKED--------------SYKPIVE------------------FIDAQFEAYLQEELKIRR 138 (427)
T ss_dssp CEEEEEEEEEECCCC-C--CHHH--------------HSHHHHH------------------HHHHHHHHHHHHC--CCC
T ss_pred cccccchhhhhhhhhcc--ccch--------------hhhHHHH------------------HHHHHHHHHHHHHHhhhh
Confidence 76677888876422110 0000 0000000 0111122222221 2110
Q ss_pred ---cccccc-----------CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH----HccCCCeEEEE
Q 006442 251 ---DDGDRL-----------VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY----LGKQDVPMVII 312 (645)
Q Consensus 251 ---~~~~~~-----------~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~----L~~~g~tvIiv 312 (645)
...+.. ...|+-.. +.++++|..+++|+++|+|+..|.+.....+... |+..|.+|+.+
T Consensus 139 ~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~i 215 (427)
T 2qag_B 139 VLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQF 215 (427)
T ss_dssp CCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCC
T ss_pred hhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEec
Confidence 001111 12455555 7999999999999999999999998877666543 55679999999
Q ss_pred ecCH
Q 006442 313 SHDR 316 (645)
Q Consensus 313 sHd~ 316 (645)
|.|-
T Consensus 216 s~~d 219 (427)
T 2qag_B 216 PTDD 219 (427)
T ss_dssp C---
T ss_pred CCCc
Confidence 9764
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-14 Score=155.12 Aligned_cols=127 Identities=14% Similarity=0.156 Sum_probs=86.4
Q ss_pred eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC-eeEEEECceecccchhccchhhcCCCCCCHHHHHHhhhc
Q 006442 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-GGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAE 516 (645)
Q Consensus 438 ~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~-~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~ 516 (645)
.+|++++ +++|+.++|+||||||||||+++|+|+++|+ +|.|.+.+.++. +..... ..+ ..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e--~~~~~~-~~~-------------v~ 187 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE--YVFKHK-KSI-------------VN 187 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC--SCCCCS-SSE-------------EE
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh--hhhccC-ceE-------------EE
Confidence 3566665 8999999999999999999999999999998 899976554321 110000 000 00
Q ss_pred cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcCceEEEE
Q 006442 517 DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITV 596 (645)
Q Consensus 517 ~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~~tvi~v 596 (645)
+. .+|+ .+..| +.+|+++|..+|+++++|||| |.++...+.+.. ..+.+|+++
T Consensus 188 Q~----------~~g~-------~~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~-~~g~~vi~t 240 (372)
T 2ewv_A 188 QR----------EVGE-------DTKSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGT 240 (372)
T ss_dssp EE----------EBTT-------TBSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-TTTCEEEEC
T ss_pred ee----------ecCC-------CHHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHH-hcCCEEEEE
Confidence 00 1222 12334 469999999999999999999 777655444433 335699999
Q ss_pred ecCHHHHHhhCCEE
Q 006442 597 SHDRYFVKQIVNRV 610 (645)
Q Consensus 597 sHd~~~i~~~~d~v 610 (645)
+|+.+ +...+||+
T Consensus 241 ~H~~~-~~~~~~rl 253 (372)
T 2ewv_A 241 LHTNT-AIDTIHRI 253 (372)
T ss_dssp CCCCS-HHHHHHHH
T ss_pred ECcch-HHHHHHHH
Confidence 99865 55555554
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-15 Score=144.11 Aligned_cols=82 Identities=22% Similarity=0.089 Sum_probs=69.9
Q ss_pred EEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCce-----EEEEeccCccCC
Q 006442 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMK-----IAFLSQEFEVSM 174 (645)
Q Consensus 100 i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~-----i~~v~Q~~~~~~ 174 (645)
.+++++.|++..+++++||+|++|++++|+||||||||||+|+|+|++ |++|+|.+++.... -.|++|++.++
T Consensus 10 ~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~~l~- 87 (158)
T 1htw_A 10 DEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHFDLY- 87 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEEECT-
T ss_pred CHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceeccccc-
Confidence 346677887777999999999999999999999999999999999999 99999988765431 12689998877
Q ss_pred CCCHHHHHH
Q 006442 175 SRTVREEFM 183 (645)
Q Consensus 175 ~~Tv~eni~ 183 (645)
.+|+.||+.
T Consensus 88 ~ltv~e~l~ 96 (158)
T 1htw_A 88 RLADPEELE 96 (158)
T ss_dssp TCSCTTHHH
T ss_pred cCCcHHHHH
Confidence 889999874
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.9e-15 Score=161.75 Aligned_cols=165 Identities=12% Similarity=0.137 Sum_probs=101.3
Q ss_pred ceeeeeEEEec--CcEEEEEcCCCCcHHHHHHHHHcCCCCCe----eEEEECceecccchhccchhhcCCCCCCHHHHHH
Q 006442 439 LFNRANLTIER--GEKTAIIGPNGCGKSTLLKLIMGLEKPRG----GEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVA 512 (645)
Q Consensus 439 ~l~~vsl~i~~--Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~----G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~ 512 (645)
+...|+++|.+ |++++|+|+||||||||+++|+|+++|++ |++.+++.. ... ...+ ..... +++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~------~~~-~~~~-~~~~~-~~I~ 227 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKL------GGD-EQAM-QYSDY-PQMA 227 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSS------SSC-TTSS-CTTTH-HHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhc------CCC-cccC-ChhHH-HHHH
Confidence 35679999999 99999999999999999999999999998 665442110 000 0001 11122 3343
Q ss_pred hhhccccHHHHHHHHhhcCC-ChhhhccCcCcCCHhHHHHHHHHHHHc-cCCCeEEeeC---CC------CCCCHHHHHH
Q 006442 513 EAAEDWRIDDIKGLLGRCNF-KADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDE---PT------NHLDIPSKEM 581 (645)
Q Consensus 513 ~~~~~~~~~~~~~~L~~~~l-~~~~~~~~~~~LSgGqkqrv~lAral~-~~p~lLlLDE---Pt------~~LD~~s~~~ 581 (645)
........ ......+.+-+ ..+..+..+..+|+|++++..+++++. .+|++++||| |+ .++|...+..
T Consensus 228 ~~~q~~~~-~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~ 306 (365)
T 1lw7_A 228 LGHQRYID-YAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQ 306 (365)
T ss_dssp HHHHHHHH-HHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHH
T ss_pred HHHHHHHH-HHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHH
Confidence 32211100 00111111100 012223344567778888888888875 6999999999 65 5899999999
Q ss_pred HHHHHHh----cCceEEEEecCHHHHHhhCCEEEEEe
Q 006442 582 LEEAISE----YKGTVITVSHDRYFVKQIVNRVVEVK 614 (645)
Q Consensus 582 l~~~l~~----~~~tvi~vsHd~~~i~~~~d~v~~l~ 614 (645)
+.++|.+ .+.+||+++|. ....++++++..++
T Consensus 307 l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 307 FQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIE 342 (365)
T ss_dssp HHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHH
Confidence 9988843 35699999986 45666777666554
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.2e-12 Score=128.84 Aligned_cols=144 Identities=15% Similarity=0.178 Sum_probs=79.9
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHc--CCCC-----CeeEEEECceecc-cchhccchhhcCCCCCCHHHHHHhhhcc
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMG--LEKP-----RGGEVLLGEHNVL-PNYFEQNQAEALDLDKTVLETVAEAAED 517 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g--~~~p-----~~G~i~~~g~~~~-~~~~~q~~~~~l~~~~tv~e~v~~~~~~ 517 (645)
-|++|++++|+||||||||||++.|++ ..+| ..|.+++++.+.. +..+.+.. ..+ .
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~-~~~---------------g 83 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVA-ERY---------------G 83 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHH-HHT---------------T
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHH-HHc---------------C
Confidence 488999999999999999999999999 5655 5677777654311 00000000 000 0
Q ss_pred ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHH-HHHHHHHc--cCCCeEEeeCCCCCCCHH-------H-----HHHH
Q 006442 518 WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKAR-LAFCKFMV--KPSTLLVLDEPTNHLDIP-------S-----KEML 582 (645)
Q Consensus 518 ~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqr-v~lAral~--~~p~lLlLDEPt~~LD~~-------s-----~~~l 582 (645)
+..+ ++++.+.+ ...++..+... +.-+..++ .+|+++++|||++.+|.. + ...+
T Consensus 84 ~~~~---~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~ 152 (243)
T 1n0w_A 84 LSGS---DVLDNVAY--------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARF 152 (243)
T ss_dssp CCHH---HHHHTEEE--------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHH
T ss_pred CCHH---HHhhCeEE--------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHH
Confidence 0111 11121111 11245554433 22233333 589999999999999975 3 1222
Q ss_pred HHHH----HhcCceEEEEecCHHHHHh-------------------hCCEEEEEeCC
Q 006442 583 EEAI----SEYKGTVITVSHDRYFVKQ-------------------IVNRVVEVKGS 616 (645)
Q Consensus 583 ~~~l----~~~~~tvi~vsHd~~~i~~-------------------~~d~v~~l~~g 616 (645)
...| ++.+.|||+++|....... +||++++|+.+
T Consensus 153 ~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 153 LRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 2222 2446799999997665443 79999999854
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.38 E-value=6.5e-13 Score=142.39 Aligned_cols=75 Identities=28% Similarity=0.470 Sum_probs=67.7
Q ss_pred cCcCcCCHhHHHHH------HHHHHHccC-CCeEEeeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhCCE
Q 006442 539 RKVSLLSGGEKARL------AFCKFMVKP-STLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNR 609 (645)
Q Consensus 539 ~~~~~LSgGqkqrv------~lAral~~~-p~lLlLDEPt~~LD~~s~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~d~ 609 (645)
.++..||||||||+ ++|++++.+ |++|||||||++||+..+..+.+.|.+.. .+||+||||.+ +..+||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 56778999999988 567899999 99999999999999999999999998763 49999999987 5788999
Q ss_pred EEEEe
Q 006442 610 VVEVK 614 (645)
Q Consensus 610 v~~l~ 614 (645)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-13 Score=146.51 Aligned_cols=116 Identities=17% Similarity=0.150 Sum_probs=83.4
Q ss_pred eeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC-CCccEEEEc-C------CCceEEEEeccCccCCCCCHHHHHH
Q 006442 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-PDSGNVIKA-K------SNMKIAFLSQEFEVSMSRTVREEFM 183 (645)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~-p~~G~I~~~-~------~~~~i~~v~Q~~~~~~~~Tv~eni~ 183 (645)
-++++++. .+|++++|+||||||||||+++|+|..+ |.+|+|... | ....+++++|++.++...+++++.+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~l 283 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGL 283 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCCC
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhhh
Confidence 35556654 4799999999999999999999999999 999999875 3 2346899999987766667766311
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChH
Q 006442 184 SAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263 (645)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGG 263 (645)
.. ++..++...+.++++.+|+. ...++.+.+|| |
T Consensus 284 ~~--------------------------------------------l~~~e~~~~~~e~l~~~gl~-~f~~~~~~~lS-G 317 (358)
T 2rcn_A 284 WH--------------------------------------------LEPEQITQGFVEFHDYLGHC-KYRDCKHDADP-G 317 (358)
T ss_dssp CC--------------------------------------------CCHHHHHHTSGGGGGGTTCS-SSTTCCSSSCT-T
T ss_pred cC--------------------------------------------CCHHHHHHHHHHHHHHcCCc-hhcCCCcccCC-H
Confidence 00 11112334456778888886 57888999999 9
Q ss_pred HHHHHHHHHHH
Q 006442 264 WQMRMSLGKIL 274 (645)
Q Consensus 264 qkqRvaLAraL 274 (645)
|+||++||+++
T Consensus 318 ~~~r~ala~gl 328 (358)
T 2rcn_A 318 CAIREAVENGA 328 (358)
T ss_dssp CHHHHHHHHTS
T ss_pred HHHHHHHHhcC
Confidence 99999999875
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.37 E-value=2.6e-14 Score=144.20 Aligned_cols=132 Identities=20% Similarity=0.298 Sum_probs=91.7
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHH---cCCCCCeeEEEECceecc--cc----hhccchhhcCCCCCCHHHHHHhhhc---
Q 006442 449 RGEKTAIIGPNGCGKSTLLKLIM---GLEKPRGGEVLLGEHNVL--PN----YFEQNQAEALDLDKTVLETVAEAAE--- 516 (645)
Q Consensus 449 ~Ge~v~i~G~NGsGKSTLl~~l~---g~~~p~~G~i~~~g~~~~--~~----~~~q~~~~~l~~~~tv~e~v~~~~~--- 516 (645)
++++++|+|+||||||||+++|+ |+..|+.|.|.+++.+.. .+ ++.|+ ..+.+..++.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~v~~~l~~~l~~~~ 103 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEK--SLLVPDHVITRLMMSELENRR 103 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHT--TCCCCHHHHHHHHHHHHHTCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhcC
Confidence 47999999999999999999999 999999998877653211 11 11221 234455677777764210
Q ss_pred -------c--ccHHHHHHHHh--hcC------------CChhhhccCcCcCCHhHHHHHHHHHHH-ccCCCeEEee----
Q 006442 517 -------D--WRIDDIKGLLG--RCN------------FKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLD---- 568 (645)
Q Consensus 517 -------~--~~~~~~~~~L~--~~~------------l~~~~~~~~~~~LSgGqkqrv~lAral-~~~p~lLlLD---- 568 (645)
. ....++..+.. .++ + ....++.+..||| |+ +++ +.+|++++||
T Consensus 104 ~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l-~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~ 175 (246)
T 2bbw_A 104 GQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLK-DRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTG 175 (246)
T ss_dssp TSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHH-HHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTC
T ss_pred CCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHH-HHHHcCCCcCCCC----Cc---cccccCCCcccccccccc
Confidence 0 11222333322 222 1 2344677889999 65 777 9999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcC
Q 006442 569 EPTNHLDIPSKEMLEEAISEYK 590 (645)
Q Consensus 569 EPt~~LD~~s~~~l~~~l~~~~ 590 (645)
|||++||..+.+.+.+.+.++.
T Consensus 176 EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 176 EPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp CBCBCCGGGSHHHHHHHHHHHH
T ss_pred cccccCCCCcHHHHHHHHHHHH
Confidence 9999999999999999888763
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.37 E-value=4.4e-16 Score=150.53 Aligned_cols=161 Identities=12% Similarity=0.048 Sum_probs=96.9
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHH
Q 006442 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLER 198 (645)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~ 198 (645)
|++++|+||||||||||+++|++ +.+|.+.+++.. ..+++++|.....+..++++++.....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------- 67 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTV----------- 67 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHH-----------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHHHH-----------
Confidence 67999999999999999999997 668888876432 123455554322122244444321000
Q ss_pred HHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCC--ChHHHHHHHHHH----
Q 006442 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASF--SSGWQMRMSLGK---- 272 (645)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~L--SGGqkqRvaLAr---- 272 (645)
...... ...+++.+.. ....+....+ |+|++|++.++.
T Consensus 68 --~~~~~~--------------------------------~~~ild~~~~--~~~~~~~~~~~~s~g~~~~~~~i~L~~~ 111 (189)
T 2bdt_A 68 --NFLLAQ--------------------------------NDVVLDYIAF--PDEAEALAQTVQAKVDDVEIRFIILWTN 111 (189)
T ss_dssp --HHHHTT--------------------------------CEEEEESCCC--HHHHHHHHHHHHHHCSSEEEEEEEEECC
T ss_pred --HHHhcC--------------------------------CcEEEeeccC--HHHHHHHHHHHHhcccCCCeEEEEEeCC
Confidence 000000 0001111110 0000112234 888888888888
Q ss_pred --HHccCCCEEEEeCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecC-HHHHHhhcCeEEEEcCceeEEeccC
Q 006442 273 --ILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHD-RAFLDQLCTKIVETEMGVSRTYEGN 340 (645)
Q Consensus 273 --aL~~~p~iLLLDEPts~LD~~~~~~l~~~L---~~~g~tvIivsHd-~~~l~~~~d~i~~l~~G~~~~~~g~ 340 (645)
+++.+|....+|+ +||+..+.. .+.+ .+.+.++|.+||. ++.+.++|++|+ ++|++ .+.|+
T Consensus 112 ~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~-~~~~~ 178 (189)
T 2bdt_A 112 REELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRF-IFCMA 178 (189)
T ss_dssp HHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGG-SCC--
T ss_pred HHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcE-EEeec
Confidence 8999999888884 899987766 5444 3457899999999 999999999998 88876 34454
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.5e-16 Score=152.26 Aligned_cols=164 Identities=14% Similarity=0.125 Sum_probs=99.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----cchhccchhhcCCCCCCHHHHHHhhhccccHHHHHH
Q 006442 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKG 525 (645)
Q Consensus 450 Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~ 525 (645)
|++++|+||||||||||+++|++ +.+|.+.+++.++. .+++.+.. ......++++++..............
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~ 76 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWE--SDELLALTWKNITDLTVNFLLAQNDV 76 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGG--CHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCcc--chhHHHHHHHHHHHHHHHHHhcCCcE
Confidence 78999999999999999999997 66788998875542 12222211 01112345555443211000000000
Q ss_pred HHhhcCCChhhhccCcCcC--CHhHHHHHHHHH------HHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEE
Q 006442 526 LLGRCNFKADMLDRKVSLL--SGGEKARLAFCK------FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVI 594 (645)
Q Consensus 526 ~L~~~~l~~~~~~~~~~~L--SgGqkqrv~lAr------al~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi 594 (645)
+++.+. ... ..+.+..+ |+|++|++.++. +++.+|....+|+ +||+..... .+.+..+ +.+||
T Consensus 77 ild~~~-~~~-~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii 150 (189)
T 2bdt_A 77 VLDYIA-FPD-EAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFY 150 (189)
T ss_dssp EEESCC-CHH-HHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEE
T ss_pred EEeecc-CHH-HHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEE
Confidence 111111 111 11222335 889988888887 8888888888884 899988877 6666654 35899
Q ss_pred EEecC-HHHHHhhCCEEEEEeCCeEEeeCCChhH
Q 006442 595 TVSHD-RYFVKQIVNRVVEVKGSNLQDYAGDYNQ 627 (645)
Q Consensus 595 ~vsHd-~~~i~~~~d~v~~l~~g~i~~~~~~~~~ 627 (645)
.+||. ++.+.++||+|+ ++|+++. .|+.+.
T Consensus 151 ~tsh~~~~~~e~~~~~i~--~~g~~~~-~~~~~~ 181 (189)
T 2bdt_A 151 NTSHLQPTNLNDIVKNLK--TNPRFIF-CMAGDP 181 (189)
T ss_dssp ECSSSCGGGHHHHHHHHH--HCGGGSC-C-----
T ss_pred eCCCCChhhHHHHHHHHh--hCCcEEE-eecCCc
Confidence 99999 999999999999 9999874 455443
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.35 E-value=5e-14 Score=154.08 Aligned_cols=147 Identities=18% Similarity=0.206 Sum_probs=97.5
Q ss_pred eeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------------ceEEEEeccCccCCCC
Q 006442 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------------MKIAFLSQEFEVSMSR 176 (645)
Q Consensus 113 L~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------------~~i~~v~Q~~~~~~~~ 176 (645)
-+++||++++|++++|+|+||||||||+++|+|++++++|+|.+.+.+ ..|+|++|.+...+..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 468999999999999999999999999999999999999999985321 1489999987666666
Q ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCccccccc
Q 006442 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (645)
Q Consensus 177 Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~ 256 (645)
++++|+..+.. .. .+. -+++-.|..... ...
T Consensus 363 tV~e~l~~a~~----------------~~----~Dv----------------------------VLIDTaGrl~~~-~~l 393 (503)
T 2yhs_A 363 VIFDAIQAAKA----------------RN----IDV----------------------------LIADTAGRLQNK-SHL 393 (503)
T ss_dssp HHHHHHHHHHH----------------TT----CSE----------------------------EEECCCCSCCCH-HHH
T ss_pred HHHHHHHHHHh----------------cC----CCE----------------------------EEEeCCCccchh-hhH
Confidence 78887642210 00 000 012222322110 111
Q ss_pred CCCCChHHHHHHHHHHHHc-cCCC-EEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEec
Q 006442 257 VASFSSGWQMRMSLGKILL-QDPD-LLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISH 314 (645)
Q Consensus 257 ~~~LSGGqkqRvaLAraL~-~~p~-iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsH 314 (645)
+.+| +|++.+++++. ..|+ +||..+|+.|.|.. ..+..+-+..+.|.|++||
T Consensus 394 m~EL----~kiv~iar~l~~~~P~evLLvLDattGq~al--~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 394 MEEL----KKIVRVMKKLDVEAPHEVMLTIDASTGQNAV--SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp HHHH----HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH--HHHHHHHHHTCCSEEEEEC
T ss_pred HHHH----HHHHHHHHHhccCCCCeeEEEecCcccHHHH--HHHHHHHhhcCCCEEEEEc
Confidence 1223 47888888774 4564 56666689886654 2333333346899999999
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.34 E-value=4.6e-12 Score=126.57 Aligned_cols=31 Identities=23% Similarity=0.208 Sum_probs=28.3
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHc--CCCC
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAG--QEEP 149 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G--~~~p 149 (645)
-|++|++++|+||||||||||++.|++ ..+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~ 52 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPI 52 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCG
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCch
Confidence 489999999999999999999999999 5655
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.34 E-value=1e-13 Score=145.79 Aligned_cols=155 Identities=15% Similarity=0.218 Sum_probs=100.7
Q ss_pred EECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------------ceEEEEeccCccCCCCCHHHHHH
Q 006442 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------------MKIAFLSQEFEVSMSRTVREEFM 183 (645)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------------~~i~~v~Q~~~~~~~~Tv~eni~ 183 (645)
.++|++++|+||||||||||+++|+|.++|++|+|.+.+.+ ..+.|++|.+...+..++++|+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 47899999999999999999999999999999999886532 23668999887777778888874
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChH
Q 006442 184 SAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263 (645)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGG 263 (645)
.+... . .+. -+++..|.. +.....+.+||
T Consensus 206 ~~~~~----------------~----~d~----------------------------vliDtaG~~-~~~~~l~~eL~-- 234 (328)
T 3e70_C 206 HAKAR----------------G----IDV----------------------------VLIDTAGRS-ETNRNLMDEMK-- 234 (328)
T ss_dssp HHHHH----------------T----CSE----------------------------EEEEECCSC-CTTTCHHHHHH--
T ss_pred HHHhc----------------c----chh----------------------------hHHhhccch-hHHHHHHHHHH--
Confidence 22100 0 000 012233332 11122233333
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHH---------HHHhhcCeEEEEcCce
Q 006442 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRA---------FLDQLCTKIVETEMGV 333 (645)
Q Consensus 264 qkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~---------~l~~~~d~i~~l~~G~ 333 (645)
.++|++..++.+++||.++. .| ..+.+..+-+..+.|+|++||.-+ .+....-.|.++..|.
T Consensus 235 -----~i~ral~~de~llvLDa~t~-~~--~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge 305 (328)
T 3e70_C 235 -----KIARVTKPNLVIFVGDALAG-NA--IVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQ 305 (328)
T ss_dssp -----HHHHHHCCSEEEEEEEGGGT-TH--HHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSS
T ss_pred -----HHHHHhcCCCCEEEEecHHH-HH--HHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCC
Confidence 48999999999999995554 33 333344443456899999999532 2233344566666664
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.34 E-value=5.5e-15 Score=149.22 Aligned_cols=143 Identities=20% Similarity=0.220 Sum_probs=85.7
Q ss_pred CCcEEEEECCCCccHHHHHHHHH---cCCCCCccEEEEcCCC------ceEEEEeccCccCCCCCHHHHHHHhhHHHHHH
Q 006442 122 KGEKVGLVGVNGAGKTTQLRIIA---GQEEPDSGNVIKAKSN------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEI 192 (645)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~l~---G~~~p~~G~I~~~~~~------~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~ 192 (645)
++++++|+||||||||||+++|+ |+..|+.|+|.+.+.. ..+.+++|+..+.+..++.+++...+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~---- 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELEN---- 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT----
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh----
Confidence 47899999999999999999999 9999999988765321 1133344554444444555555321100
Q ss_pred HHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhc--hhcCC-----------CcccccccCCC
Q 006442 193 AGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM--PELGF-----------TADDGDRLVAS 259 (645)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll--~~lgl-----------~~~~~~~~~~~ 259 (645)
..... . .+ ...+. .. ..+..+. ..+++ .....++.+..
T Consensus 102 ----------~~~~~--~-il--------------~g~~~-~~-~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~ 152 (246)
T 2bbw_A 102 ----------RRGQH--W-LL--------------DGFPR-TL-GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHP 152 (246)
T ss_dssp ----------CTTSC--E-EE--------------ESCCC-SH-HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEET
T ss_pred ----------cCCCe--E-EE--------------ECCCC-CH-HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcC
Confidence 00000 0 00 00000 00 0011110 11110 01234567889
Q ss_pred CChHHHHHHHHHHHH-ccCCCEEEEe----CCCCCCCHHHHHHHHHHHcc
Q 006442 260 FSSGWQMRMSLGKIL-LQDPDLLLLD----EPTNHLDLDTIEWLEGYLGK 304 (645)
Q Consensus 260 LSGGqkqRvaLAraL-~~~p~iLLLD----EPts~LD~~~~~~l~~~L~~ 304 (645)
||| |+ +|+ +.+|++++|| |||++||+.+.+.+.+.+++
T Consensus 153 lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~ 195 (246)
T 2bbw_A 153 PSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQ 195 (246)
T ss_dssp TTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHH
T ss_pred CCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHH
Confidence 999 66 777 9999999999 99999999998888776643
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.9e-14 Score=150.51 Aligned_cols=153 Identities=14% Similarity=0.089 Sum_probs=102.1
Q ss_pred EEEeeeee---eCC--eece---------eeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccc
Q 006442 426 TIKNLEFG---YED--RLLF---------NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN 491 (645)
Q Consensus 426 ~~~~v~~~---y~~--~~~l---------~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~ 491 (645)
++++++|+ |++ ..+| +++||.|++|+.++|+||||||||||+++|+|+++|++|.|.++|..-
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e--- 213 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPE--- 213 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSC---
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccc---
Confidence 67888888 853 3455 999999999999999999999999999999999999999999986421
Q ss_pred hhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCC
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt 571 (645)
+......... ...... .....++++..++-.|+.++..+|+.+++|||+
T Consensus 214 ~~~~~~~~~v-------------~~v~~q------------------~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r 262 (361)
T 2gza_A 214 LFLPDHPNHV-------------HLFYPS------------------EAKEEENAPVTAATLLRSCLRMKPTRILLAELR 262 (361)
T ss_dssp CCCTTCSSEE-------------EEECC----------------------------CCHHHHHHHHTTSCCSEEEESCCC
T ss_pred cCccccCCEE-------------EEeecC------------------ccccccccccCHHHHHHHHHhcCCCEEEEcCch
Confidence 1000000000 000000 000012455568889999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhCCEEEEEeCCe
Q 006442 572 NHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSN 617 (645)
Q Consensus 572 ~~LD~~s~~~l~~~l~~~~~tvi~vsHd~~~i~~~~d~v~~l~~g~ 617 (645)
. .+... +.+.+..-..|++.++|+.+ +...++|+..+..+.
T Consensus 263 ~---~~~~~-~l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 263 G---GEAYD-FINVAASGHGGSITSCHAGS-CELTFERLALMVLQN 303 (361)
T ss_dssp S---THHHH-HHHHHHTTCCSCEEEEECSS-HHHHHHHHHHHHTTS
T ss_pred H---HHHHH-HHHHHhcCCCeEEEEECCCC-HHHHHHHHHHHHhcc
Confidence 6 22222 22223222247899999965 667788888887654
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2e-13 Score=135.51 Aligned_cols=128 Identities=13% Similarity=0.254 Sum_probs=78.8
Q ss_pred eEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC--CeeEEEECceeccc------chhccchhhcCCCCCCHHHHHHhhh
Q 006442 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP--RGGEVLLGEHNVLP------NYFEQNQAEALDLDKTVLETVAEAA 515 (645)
Q Consensus 444 sl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p--~~G~i~~~g~~~~~------~~~~q~~~~~l~~~~tv~e~v~~~~ 515 (645)
.-..++|++++|+||||||||||+++|+|+++| ..|.|.+.+.+... +|++|... ..+......
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~--------~f~~~~~~~ 81 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHD--------EFKEMISRD 81 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHH--------HHHHHHHTT
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHH--------HHHHHHhcC
Confidence 345789999999999999999999999999986 68888776654322 12222110 011100000
Q ss_pred ccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcCceEEE
Q 006442 516 EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVIT 595 (645)
Q Consensus 516 ~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~~tvi~ 595 (645)
. +++...+ ...+.|-.++. +..++..++++||| ||+.+...+.+.+. .+.||++
T Consensus 82 ~---------f~E~~~~--------~~~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-~~~tI~i 135 (219)
T 1s96_A 82 A---------FLEHAEV--------FGNYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-HARSIFI 135 (219)
T ss_dssp C---------EEEEEEE--------TTEEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-TCEEEEE
T ss_pred H---------HHHHHHH--------HhccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-CCEEEEE
Confidence 0 0000000 00111111222 34556678999999 99999999999887 3569999
Q ss_pred EecCHHHHHh
Q 006442 596 VSHDRYFVKQ 605 (645)
Q Consensus 596 vsHd~~~i~~ 605 (645)
+|||++.+.+
T Consensus 136 ~th~~~~l~~ 145 (219)
T 1s96_A 136 LPPSKIELDR 145 (219)
T ss_dssp ECSSHHHHHH
T ss_pred ECCCHHHHHH
Confidence 9999998876
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=3.6e-13 Score=145.82 Aligned_cols=146 Identities=23% Similarity=0.257 Sum_probs=90.5
Q ss_pred eeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC-----------CCccEEEEcCCCceEEEEeccCccCCCCCHHHH
Q 006442 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----------PDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREE 181 (645)
Q Consensus 113 L~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~-----------p~~G~I~~~~~~~~i~~v~Q~~~~~~~~Tv~en 181 (645)
-++++|+++.|+.++|||+||||||||+++|+|..+ |..|.|.+++ ... -.+.+.|.+... ..++
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~-~~l~DtpGli~~--a~~~ 222 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EER-FTLADIPGIIEG--ASEG 222 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCE-EEEEECCCCCCC--GGGS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cce-EEEEeccccccc--hhhh
Confidence 478999999999999999999999999999999843 3333333321 011 122233322111 0000
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCC
Q 006442 182 FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFS 261 (645)
Q Consensus 182 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LS 261 (645)
. .+... + + . ..++++.++..+++. +.++.+||
T Consensus 223 ~--~L~~~----------------------f----l-------~---------~~era~~lL~vvDls----~~~~~~ls 254 (416)
T 1udx_A 223 K--GLGLE----------------------F----L-------R---------HIARTRVLLYVLDAA----DEPLKTLE 254 (416)
T ss_dssp C--CSCHH----------------------H----H-------H---------HHTSSSEEEEEEETT----SCHHHHHH
T ss_pred h--hhhHH----------------------H----H-------H---------HHHHHHhhhEEeCCc----cCCHHHHH
Confidence 0 00000 0 0 0 001122345555543 45678899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH---HHHHHccCCCeEEEEec
Q 006442 262 SGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEW---LEGYLGKQDVPMVIISH 314 (645)
Q Consensus 262 GGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~---l~~~L~~~g~tvIivsH 314 (645)
+||+|++++|++|+..|.+|+| |.+|...... +.+.+++.+.++|++|.
T Consensus 255 ~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 255 TLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp HHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHHHHHHHHTTTSCEEECCT
T ss_pred HHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHHHHHHHHhcCCeEEEEEC
Confidence 9999999999999999999999 9999865433 33444556777777664
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2.3e-14 Score=134.95 Aligned_cols=83 Identities=14% Similarity=0.036 Sum_probs=66.9
Q ss_pred EEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc-----chhccchhhcC
Q 006442 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP-----NYFEQNQAEAL 501 (645)
Q Consensus 427 ~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~-----~~~~q~~~~~l 501 (645)
..++++.|+++.+++++||+|++|++++|+||||||||||+++|+|++ |++|+|.++|.++.. .+..|+ ..+
T Consensus 10 ~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~--~~l 86 (158)
T 1htw_A 10 DEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYH--FDL 86 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEE--EEC
T ss_pred CHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceec--ccc
Confidence 356778888778999999999999999999999999999999999999 999999998866531 133443 234
Q ss_pred CCCCCHHHHHHh
Q 006442 502 DLDKTVLETVAE 513 (645)
Q Consensus 502 ~~~~tv~e~v~~ 513 (645)
. .+|+.+++..
T Consensus 87 ~-~ltv~e~l~~ 97 (158)
T 1htw_A 87 Y-RLADPEELEF 97 (158)
T ss_dssp T-TCSCTTHHHH
T ss_pred c-cCCcHHHHHH
Confidence 4 6788777743
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.7e-15 Score=157.67 Aligned_cols=78 Identities=15% Similarity=0.185 Sum_probs=67.2
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCC--------------Cce
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS--------------NMK 162 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~--------------~~~ 162 (645)
.|++++++++|+...+++++||++.+|++++|+|+||||||||+++|+|++.|++|+|.+.+. ..+
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 108 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence 367788899997778999999999999999999999999999999999999999999987542 124
Q ss_pred EEEEeccCccCC
Q 006442 163 IAFLSQEFEVSM 174 (645)
Q Consensus 163 i~~v~Q~~~~~~ 174 (645)
++|++|++.++.
T Consensus 109 i~~v~q~~~~~~ 120 (337)
T 2qm8_A 109 MARLAIDRNAFI 120 (337)
T ss_dssp STTGGGCTTEEE
T ss_pred heeeccCccccc
Confidence 788999886654
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-14 Score=157.79 Aligned_cols=136 Identities=15% Similarity=0.083 Sum_probs=96.0
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc-------------
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP------------- 490 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~------------- 490 (645)
.++++++.+.|+...+|+++ + ..+|++++|+|||||||||||++|+|+++|.+|+|.+.+.++..
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~ 220 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPR 220 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGG
T ss_pred CCCHHHcCCCHHHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccc
Confidence 45677777777666788888 5 48999999999999999999999999999999999887654310
Q ss_pred -ch---------hccchhhcCCCC----CCHHHHHHhhhc---------cccHHHHHHHHhhcCCChhhhccCcCcCCHh
Q 006442 491 -NY---------FEQNQAEALDLD----KTVLETVAEAAE---------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547 (645)
Q Consensus 491 -~~---------~~q~~~~~l~~~----~tv~e~v~~~~~---------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgG 547 (645)
++ ++|+++..+..+ .|+.+++..+.. ......+...|..+++... ..+..||||
T Consensus 221 ~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~---~~~~~LSgg 297 (418)
T 1p9r_A 221 VDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPF---LISSSLLGV 297 (418)
T ss_dssp GTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHH---HHHHHEEEE
T ss_pred cCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHH---HHHHHHHHH
Confidence 11 123222111111 467777765421 1112334456777888532 366789999
Q ss_pred HHHHHHHHHHHccCCCeEE
Q 006442 548 EKARLAFCKFMVKPSTLLV 566 (645)
Q Consensus 548 qkqrv~lAral~~~p~lLl 566 (645)
|+|| |||+|+.+|+++.
T Consensus 298 ~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 298 LAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEE--EEEEECTTTCEEE
T ss_pred HHHH--hhhhhcCCCCccC
Confidence 9999 9999999999876
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=8.6e-15 Score=153.69 Aligned_cols=56 Identities=21% Similarity=0.245 Sum_probs=40.7
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhh
Q 006442 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQL 322 (645)
Q Consensus 258 ~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~ 322 (645)
.+||+||+||+..+++++.+|+++ ||| ..-.+.|.+ ++ .+.||+++||+...+..+
T Consensus 140 ~~ls~g~~Q~~~ad~ill~k~dl~--de~-----~~l~~~l~~-l~-~~~~ii~~sh~~~~~~~l 195 (318)
T 1nij_A 140 NQFTIAQSQVGYADRILLTKTDVA--GEA-----EKLHERLAR-IN-ARAPVYTVTHGDIDLGLL 195 (318)
T ss_dssp HHCHHHHHHHHTCSEEEEECTTTC--SCT-----HHHHHHHHH-HC-SSSCEEECCSSCCCGGGG
T ss_pred hhchHHHHHHHhCCEEEEECcccC--CHH-----HHHHHHHHH-hC-CCCeEEEecccCCCHHHH
Confidence 379999999999999999999987 999 222222322 33 478999999975544443
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.9e-14 Score=151.07 Aligned_cols=140 Identities=18% Similarity=0.220 Sum_probs=85.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC--------CCCeeEEEECceecccc-------------------------hhcc-c
Q 006442 451 EKTAIIGPNGCGKSTLLKLIMGLE--------KPRGGEVLLGEHNVLPN-------------------------YFEQ-N 496 (645)
Q Consensus 451 e~v~i~G~NGsGKSTLl~~l~g~~--------~p~~G~i~~~g~~~~~~-------------------------~~~q-~ 496 (645)
++++|+|+||||||||++.|.|+. .|+.|+|.+||..+... ++.. .
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 579999999999999999999997 78999999988764210 1100 0
Q ss_pred hhhcCCCCCCHHHHHHhhhccc------cHHHH------HHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCe
Q 006442 497 QAEALDLDKTVLETVAEAAEDW------RIDDI------KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (645)
Q Consensus 497 ~~~~l~~~~tv~e~v~~~~~~~------~~~~~------~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 564 (645)
+...+.++.++.|+...+.... ..... ...+..++.. +..++. .+||+||+||+..+++++.+|++
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~-~~~~~~-~~ls~g~~Q~~~ad~ill~k~dl 162 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAV-HADEQM-NQFTIAQSQVGYADRILLTKTDV 162 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETT-THHHHH-HHCHHHHHHHHTCSEEEEECTTT
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHH-HHHHHH-hhchHHHHHHHhCCEEEEECccc
Confidence 1112223444444332211000 00000 1112223332 222222 27999999999999999999998
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHH
Q 006442 565 LVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFV 603 (645)
Q Consensus 565 LlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i 603 (645)
+ ||| ..+.+.|++. +.||+++||+...+
T Consensus 163 ~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~ 192 (318)
T 1nij_A 163 A--GEA---------EKLHERLARINARAPVYTVTHGDIDL 192 (318)
T ss_dssp C--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCG
T ss_pred C--CHH---------HHHHHHHHHhCCCCeEEEecccCCCH
Confidence 7 999 5566666554 35999999954333
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.5e-14 Score=159.03 Aligned_cols=184 Identities=14% Similarity=0.050 Sum_probs=108.1
Q ss_pred eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-------ceEEEEeccCccCCCCCHHHHHH
Q 006442 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIAFLSQEFEVSMSRTVREEFM 183 (645)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-------~~i~~v~Q~~~~~~~~Tv~eni~ 183 (645)
.+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|.+.+.. ..+++..|........|..+.+.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~ 327 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLR 327 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHH
Confidence 47888999999999999999999999999999999999999999987643 23566666533222346666654
Q ss_pred HhhHH--------HHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch-hcCCCcccc-
Q 006442 184 SAFKE--------EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP-ELGFTADDG- 253 (645)
Q Consensus 184 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~-~lgl~~~~~- 253 (645)
.++.. +.........++....... . ...+.+......+..+.. .+++.....
T Consensus 328 ~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~-~-----------------~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~ 389 (511)
T 2oap_1 328 AALRQRPDYIIVGEVRGREAQTLFQAMSTGHA-S-----------------YSTLHAGDINQMVYRLESEPLKVPRSMLQ 389 (511)
T ss_dssp TTGGGCCSEEEESCCCSTHHHHHHHHHHTTCE-E-----------------EEEEECSSHHHHHHHHHSTTTCCCGGGGG
T ss_pred HhhccCCCeEEeCCcCHHHHHHHHHhhcCCCC-c-----------------ccccccCCHHHHHHHHHhcccccHHHHHh
Confidence 33221 0000000000000000000 0 000011122222222211 123322111
Q ss_pred --c---ccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH---ccCCCeEEE--EecCHHHHHhhc
Q 006442 254 --D---RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVI--ISHDRAFLDQLC 323 (645)
Q Consensus 254 --~---~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L---~~~g~tvIi--vsHd~~~l~~~~ 323 (645)
+ .....+||||+||+++|. + | |+|||+.....+.+.+ ...+.|+++ +||+++.+...|
T Consensus 390 ~l~~vi~~~~~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~ 457 (511)
T 2oap_1 390 FLDIALVQTMWVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFL 457 (511)
T ss_dssp GCCEEEEEEEEESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHH
T ss_pred hccEEEEEEEEEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHc
Confidence 1 223568999999987751 2 7 9999998776655544 345788875 899999998877
Q ss_pred C
Q 006442 324 T 324 (645)
Q Consensus 324 d 324 (645)
.
T Consensus 458 g 458 (511)
T 2oap_1 458 G 458 (511)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.25 E-value=6.9e-13 Score=139.44 Aligned_cols=157 Identities=13% Similarity=0.050 Sum_probs=99.1
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc-c---------------hhccchhhcCCCCCCHHHH
Q 006442 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP-N---------------YFEQNQAEALDLDKTVLET 510 (645)
Q Consensus 447 i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~-~---------------~~~q~~~~~l~~~~tv~e~ 510 (645)
.++|++++|+||||||||||++.|+|+++|++|+|.+.|.++.. . ++. +...+++..+++++
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~--q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIK--HSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEEC--CCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEe--ccccCCHHHHHHHH
Confidence 36899999999999999999999999999999999998877531 1 111 22334455677788
Q ss_pred HHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcC
Q 006442 511 VAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK 590 (645)
Q Consensus 511 v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~ 590 (645)
+..+...... .-+++..|.. +.....+ ++.-.++|++..++.+++||.+|. .| ....+..+-+..+
T Consensus 204 l~~~~~~~~d---~vliDtaG~~-~~~~~l~-------~eL~~i~ral~~de~llvLDa~t~-~~--~~~~~~~~~~~~~ 269 (328)
T 3e70_C 204 IQHAKARGID---VVLIDTAGRS-ETNRNLM-------DEMKKIARVTKPNLVIFVGDALAG-NA--IVEQARQFNEAVK 269 (328)
T ss_dssp HHHHHHHTCS---EEEEEECCSC-CTTTCHH-------HHHHHHHHHHCCSEEEEEEEGGGT-TH--HHHHHHHHHHHSC
T ss_pred HHHHHhccch---hhHHhhccch-hHHHHHH-------HHHHHHHHHhcCCCCEEEEecHHH-HH--HHHHHHHHHHhcC
Confidence 7654211000 0012222221 1111222 233348999999999999996665 32 2222333333457
Q ss_pred ceEEEEecCH---------HHHHhhCCEEEEEeCCeEE
Q 006442 591 GTVITVSHDR---------YFVKQIVNRVVEVKGSNLQ 619 (645)
Q Consensus 591 ~tvi~vsHd~---------~~i~~~~d~v~~l~~g~i~ 619 (645)
.|+|++||.- +.+....-.|.++..|+-+
T Consensus 270 it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 270 IDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp CCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred CCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 7999999954 2344556788888888754
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.6e-13 Score=146.54 Aligned_cols=167 Identities=16% Similarity=0.197 Sum_probs=95.3
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcE--EEEEcCCCCcHHHHHHHHHcCCCCCeeEEEEC---ceec-ccchhccchh
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEK--TAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG---EHNV-LPNYFEQNQA 498 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~--v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~---g~~~-~~~~~~q~~~ 498 (645)
+++++ ++.|++.+ ++++||+|++|++ ++|+||||||||||+++|+|+.- .|.-... +... ..++..|..
T Consensus 17 l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q~~- 91 (427)
T 2qag_B 17 VPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQES- 91 (427)
T ss_dssp CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC--
T ss_pred EEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEeecC-
Confidence 66777 88998877 9999999999999 99999999999999999999841 1111000 0000 112222221
Q ss_pred hcCCCCCCHHHHHHhhhc-----cc------cHHHHHHHHhhc-CCCh---hhhccCc-----------CcCCHhHHHHH
Q 006442 499 EALDLDKTVLETVAEAAE-----DW------RIDDIKGLLGRC-NFKA---DMLDRKV-----------SLLSGGEKARL 552 (645)
Q Consensus 499 ~~l~~~~tv~e~v~~~~~-----~~------~~~~~~~~L~~~-~l~~---~~~~~~~-----------~~LSgGqkqrv 552 (645)
.+.+..|+.+++.++.. .| -...+..+|... ++.. ...+..+ ..|+-.+ +
T Consensus 92 -~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---i 167 (427)
T 2qag_B 92 -NVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---L 167 (427)
T ss_dssp --CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---H
T ss_pred -ccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---H
Confidence 11122333333322110 01 112334445544 3321 0112221 2455555 7
Q ss_pred HHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecCH
Q 006442 553 AFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE----YKGTVITVSHDR 600 (645)
Q Consensus 553 ~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~----~~~tvi~vsHd~ 600 (645)
.++++|..+++++++|||+..|.+.....+.+.|++ .+.+|+.+|.|-
T Consensus 168 eilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 168 VTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp HHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred HHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 899999999999999999999999888777777764 345888888764
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.22 E-value=3.2e-14 Score=158.23 Aligned_cols=161 Identities=18% Similarity=0.180 Sum_probs=99.9
Q ss_pred eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECcee-ccc---c---h-----------------
Q 006442 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-VLP---N---Y----------------- 492 (645)
Q Consensus 437 ~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~-~~~---~---~----------------- 492 (645)
..+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|++.|.. +.. . +
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l 326 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLL 326 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHH
Confidence 346889999999999999999999999999999999999999999997753 210 0 0
Q ss_pred ---hccchhhcCCCCCCHHHHHHh--hhc-c---c---cHHHHHHHHhhc-----CCChhhh---c---cCcCcCCHhHH
Q 006442 493 ---FEQNQAEALDLDKTVLETVAE--AAE-D---W---RIDDIKGLLGRC-----NFKADML---D---RKVSLLSGGEK 549 (645)
Q Consensus 493 ---~~q~~~~~l~~~~tv~e~v~~--~~~-~---~---~~~~~~~~L~~~-----~l~~~~~---~---~~~~~LSgGqk 549 (645)
++|+++..+..+.+..|++.. +.. . . ....+.+++.++ ++..... + .....+|+||+
T Consensus 327 ~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~ 406 (511)
T 2oap_1 327 RAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTR 406 (511)
T ss_dssp HTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCE
T ss_pred HHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCc
Confidence 011111111112333332211 000 0 0 001122233332 2221111 1 23346899999
Q ss_pred HHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEE--EecCHHHHHhhCCE
Q 006442 550 ARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVIT--VSHDRYFVKQIVNR 609 (645)
Q Consensus 550 qrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~--vsHd~~~i~~~~d~ 609 (645)
||+++|. + | |+|||+.+...+.+.|.++ +.|+++ +||+++.+...|+.
T Consensus 407 ~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g~ 459 (511)
T 2oap_1 407 LRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLGV 459 (511)
T ss_dssp EEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHTS
T ss_pred eEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcCC
Confidence 9987751 1 7 9999998877666666554 358875 89999999887753
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-13 Score=145.76 Aligned_cols=157 Identities=15% Similarity=0.094 Sum_probs=104.6
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------------c
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------------P 490 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------------~ 490 (645)
|+++++++.|+.+.+++++++++.+|++++|+|+||||||||+++|+|++.|++|+|.+.+.++. .
T Consensus 30 ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i 109 (337)
T 2qm8_A 30 AESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRM 109 (337)
T ss_dssp HTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGS
T ss_pred HeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhh
Confidence 56678888887778999999999999999999999999999999999999999999998776541 1
Q ss_pred chhccchhhcCCCCC------------CHHHHH-------------------------Hhhhc------c-ccHHH----
Q 006442 491 NYFEQNQAEALDLDK------------TVLETV-------------------------AEAAE------D-WRIDD---- 522 (645)
Q Consensus 491 ~~~~q~~~~~l~~~~------------tv~e~v-------------------------~~~~~------~-~~~~~---- 522 (645)
+++.|.. .++... ++.+.+ ..... . ...+.
T Consensus 110 ~~v~q~~--~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i 187 (337)
T 2qm8_A 110 ARLAIDR--NAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGI 187 (337)
T ss_dssp TTGGGCT--TEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------C
T ss_pred eeeccCc--ccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHH
Confidence 2333321 111100 111111 00000 0 00000
Q ss_pred ---HHHHHhhcCCChhhhcc-CcCcCCHhHHHHHHHHHHHcc------CCCeEEeeCCCCCCCHHHHHHHHHHHHhc
Q 006442 523 ---IKGLLGRCNFKADMLDR-KVSLLSGGEKARLAFCKFMVK------PSTLLVLDEPTNHLDIPSKEMLEEAISEY 589 (645)
Q Consensus 523 ---~~~~L~~~~l~~~~~~~-~~~~LSgGqkqrv~lAral~~------~p~lLlLDEPt~~LD~~s~~~l~~~l~~~ 589 (645)
+.+....+.+ ...|. ....+|+|++|++..|++++. .|+++. ||++|......|.+.|.++
T Consensus 188 ~~~i~~~~~ivvl--NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 188 KKGIFELADMIAV--NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp CTTHHHHCSEEEE--ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHhccccEEEE--EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 1111111111 11232 234589999999999999987 688876 9999999999999988764
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-12 Score=124.10 Aligned_cols=109 Identities=20% Similarity=0.222 Sum_probs=71.5
Q ss_pred eEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCCCCCCHHHHHHhhhccccHHHH
Q 006442 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI 523 (645)
Q Consensus 444 sl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~ 523 (645)
++.+.+|+.++|+||||||||||+++|++.+.|..|... .++ +..+.+. .+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~--------~~~------------~~~~~~~---------~~ 82 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG--------YFF------------DTKDLIF---------RL 82 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC--------CEE------------EHHHHHH---------HH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE--------EEE------------EHHHHHH---------HH
Confidence 456778999999999999999999999998876555210 010 0111110 01
Q ss_pred HHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCC-CCCHHHHHHHHHHHHhc---CceEEEEecC
Q 006442 524 KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN-HLDIPSKEMLEEAISEY---KGTVITVSHD 599 (645)
Q Consensus 524 ~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~-~LD~~s~~~l~~~l~~~---~~tvi~vsHd 599 (645)
........ .. -....+.+|++||||||++ ++|+..+..+.+++... +.++|++||.
T Consensus 83 ~~~~~~~~------------~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 83 KHLMDEGK------------DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp HHHHHHTC------------CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHhcCch------------HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 11111000 00 0112244899999999995 99999999999988753 5699999997
Q ss_pred HH
Q 006442 600 RY 601 (645)
Q Consensus 600 ~~ 601 (645)
..
T Consensus 143 ~~ 144 (180)
T 3ec2_A 143 SL 144 (180)
T ss_dssp CS
T ss_pred Ch
Confidence 63
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.3e-12 Score=125.13 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=35.6
Q ss_pred ccCCCEEEEeCCCC-CCCHHHHHHHHHHHc---cCCCeEEEEecCH
Q 006442 275 LQDPDLLLLDEPTN-HLDLDTIEWLEGYLG---KQDVPMVIISHDR 316 (645)
Q Consensus 275 ~~~p~iLLLDEPts-~LD~~~~~~l~~~L~---~~g~tvIivsHd~ 316 (645)
+.+|++|+||||++ ++|+...+.+.+++. +.++++|++||..
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 34999999999985 999999998888764 3689999999975
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.6e-14 Score=156.61 Aligned_cols=60 Identities=13% Similarity=0.237 Sum_probs=50.7
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCC
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~ 159 (645)
++++++++.|+...+|+++ +. ++|++++|+|||||||||||++|+|+++|++|+|.+.+.
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed 203 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVED 203 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEES
T ss_pred CCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecc
Confidence 5666777777666678887 53 889999999999999999999999999999999987644
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=9.7e-13 Score=136.52 Aligned_cols=126 Identities=17% Similarity=0.116 Sum_probs=84.9
Q ss_pred eeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCCCCCCHHHHHHhhhccccH
Q 006442 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRI 520 (645)
Q Consensus 441 ~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~ 520 (645)
++++|+ +|++++|+|+||+||||++..|++.+.+..|+|.+.+.+....... +.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~--------------~q---------- 144 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR--------------EQ---------- 144 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH--------------HH----------
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH--------------HH----------
Confidence 455666 8999999999999999999999999998889998876553211000 00
Q ss_pred HHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCC-CCCCCHHHHHHHHHHHHhc-C-ceEEEEe
Q 006442 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP-TNHLDIPSKEMLEEAISEY-K-GTVITVS 597 (645)
Q Consensus 521 ~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP-t~~LD~~s~~~l~~~l~~~-~-~tvi~vs 597 (645)
...+.+..++.- .... ...+..+-+|.+|+++...+++++|+||| +.++|......+.++.... . .+++++.
T Consensus 145 --l~~~~~~~~l~~--~~~~-~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 145 --LRLLGEKVGVPV--LEVM-DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp --HHHHHHHHTCCE--EECC-TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred --HHHhcccCCeEE--EEcC-CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 001122333321 1000 01233455788999998899999999999 9999998888887777643 2 3444443
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=5.9e-11 Score=127.87 Aligned_cols=142 Identities=13% Similarity=0.121 Sum_probs=81.7
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHH--HHcCCCCCee-----EEEECceecccchhccchhhcCCCCCCHHHHHHhhhccc
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKL--IMGLEKPRGG-----EVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDW 518 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~--l~g~~~p~~G-----~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~ 518 (645)
-|++|++++|+||||||||||++. +.++.+++.| .+++++.....
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~---------------------------- 225 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFR---------------------------- 225 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCC----------------------------
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccC----------------------------
Confidence 478999999999999999999994 4577766444 67776543110
Q ss_pred cHHHHHHHHhhcCCChhhh--ccCcCcCCHhHHH--HHHHHHHHc--cCCCeEEeeCCCCCCCHHHH------------H
Q 006442 519 RIDDIKGLLGRCNFKADML--DRKVSLLSGGEKA--RLAFCKFMV--KPSTLLVLDEPTNHLDIPSK------------E 580 (645)
Q Consensus 519 ~~~~~~~~L~~~~l~~~~~--~~~~~~LSgGqkq--rv~lAral~--~~p~lLlLDEPt~~LD~~s~------------~ 580 (645)
..+++....++++..+.. +-.+.....++.+ .+.-+..++ .+|+++++||||+.+|.+.. .
T Consensus 226 -~~rl~~~a~~~gl~~~~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~ 304 (400)
T 3lda_A 226 -PVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLA 304 (400)
T ss_dssp -HHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHH
T ss_pred -HHHHHHHHHHcCCChHhHhhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHH
Confidence 001111112222211100 0011112223333 333233332 57999999999999996432 2
Q ss_pred HHHHHH----HhcCceEEEEecCH-------------------HHHHhhCCEEEEEeCC
Q 006442 581 MLEEAI----SEYKGTVITVSHDR-------------------YFVKQIVNRVVEVKGS 616 (645)
Q Consensus 581 ~l~~~l----~~~~~tvi~vsHd~-------------------~~i~~~~d~v~~l~~g 616 (645)
.+.+.| ++++.|||+|+|.. ..+...+|.+++|+.+
T Consensus 305 ~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 305 KFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 233333 34578999999983 2346678999999865
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.20 E-value=9.6e-14 Score=132.38 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=31.2
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCCCC---ccEEEEcCC
Q 006442 124 EKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVIKAKS 159 (645)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~l~G~~~p~---~G~I~~~~~ 159 (645)
++++|+|+||||||||+++|+|+++|+ .|.|.+++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~ 41 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAH 41 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCc
Confidence 589999999999999999999999998 899988754
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-11 Score=115.45 Aligned_cols=89 Identities=17% Similarity=0.248 Sum_probs=65.2
Q ss_pred ceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCee--EEEECceecccchhccchhhcCCCCCCHHHHHHhhhc
Q 006442 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG--EVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAE 516 (645)
Q Consensus 439 ~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G--~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~ 516 (645)
+++++ +|+.++|+||||||||||+++|++.+.+ +| .+.+++.++ ...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~-------------~~~------------ 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASM-------------PLT------------ 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTS-------------CCC------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHh-------------hHH------------
Confidence 45665 8999999999999999999999999876 35 343332110 000
Q ss_pred cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---Cce-
Q 006442 517 DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGT- 592 (645)
Q Consensus 517 ~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~t- 592 (645)
+++.+|++|+||||++ +|...++.+.++++.. +.+
T Consensus 79 ----------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~ 117 (149)
T 2kjq_A 79 ----------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGF 117 (149)
T ss_dssp ----------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCE
T ss_pred ----------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcE
Confidence 2356899999999998 6666688888887643 467
Q ss_pred EEEEecC
Q 006442 593 VITVSHD 599 (645)
Q Consensus 593 vi~vsHd 599 (645)
+|++||.
T Consensus 118 iiits~~ 124 (149)
T 2kjq_A 118 LLLGSEY 124 (149)
T ss_dssp EEEEESS
T ss_pred EEEECCC
Confidence 7888874
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.4e-12 Score=135.71 Aligned_cols=122 Identities=17% Similarity=0.153 Sum_probs=82.8
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEE---cCCCc----------eEEEEeccCccC-----CCCCHHH
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK---AKSNM----------KIAFLSQEFEVS-----MSRTVRE 180 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~---~~~~~----------~i~~v~Q~~~~~-----~~~Tv~e 180 (645)
++.+|++++|+||||||||||+++|+ +.+|++|+|.+ .|.+. .+||++|+|.+. +.+|+ +
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 44579999999999999999999999 99999999998 55321 379999998654 56788 7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCC
Q 006442 181 EFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASF 260 (645)
Q Consensus 181 ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~L 260 (645)
|+...|.+.. .+.-.+..+ ....+....+.++++.+++.....++++..|
T Consensus 239 ~l~~~f~~~~-------~~~c~~~~~-----------------------~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~l 288 (302)
T 2yv5_A 239 EVRNYFREFL-------RYQCKYPDC-----------------------THTNEPGCAVKEAVKNGEISCERYKSYLKII 288 (302)
T ss_dssp GGGGGCGGGH-------HHHHHSTTC-----------------------CSSSCTTCHHHHHHHTTSSCHHHHHHHHHHT
T ss_pred HHHHHHHHHH-------HccCCCCCC-----------------------CCCCCCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 7743332100 000000000 1112233467788899999755678889999
Q ss_pred ChHHHHHHHHHH
Q 006442 261 SSGWQMRMSLGK 272 (645)
Q Consensus 261 SGGqkqRvaLAr 272 (645)
||.+++++.|||
T Consensus 289 s~~~~R~~~~~~ 300 (302)
T 2yv5_A 289 KVYLEEIKELCR 300 (302)
T ss_dssp TCCCTTHHHHSS
T ss_pred HHHHHHHHHHhc
Confidence 999999999986
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.18 E-value=2e-11 Score=129.20 Aligned_cols=136 Identities=12% Similarity=0.148 Sum_probs=76.5
Q ss_pred EEEECCCCccHHHHHHHHHc-CCCCCccEEEEcCCC--------ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHH
Q 006442 126 VGLVGVNGAGKTTQLRIIAG-QEEPDSGNVIKAKSN--------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G-~~~p~~G~I~~~~~~--------~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~ 196 (645)
+.|+||||+|||||+++|+| ++.|+.|.+.+++.. ..+++++|.+.+..+.+-.. . ..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~--------- 105 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMG-N---ND--------- 105 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC--------CC---------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhcC-C---cc---------
Confidence 89999999999999999999 788999988776432 34677777654322211000 0 00
Q ss_pred HHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHcc
Q 006442 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276 (645)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~ 276 (645)
...+++.+.++....++. ... .||| +..
T Consensus 106 -----------------------------------~~~~~~~i~~~~~~~~~~-----~~~-~ls~-----------l~~ 133 (354)
T 1sxj_E 106 -----------------------------------RIVIQELLKEVAQMEQVD-----FQD-SKDG-----------LAH 133 (354)
T ss_dssp -----------------------------------HHHHHHHHHHHTTTTC-----------------------------
T ss_pred -----------------------------------hHHHHHHHHHHHHhcccc-----ccc-cccc-----------cCC
Confidence 000111122222222221 111 5676 788
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHH-HhhcCeEE
Q 006442 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFL-DQLCTKIV 327 (645)
Q Consensus 277 ~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l-~~~~d~i~ 327 (645)
+|+|+|+|||++ ||+.+...|.+.+.+ .+.++|++||+.+.+ ..+..|+.
T Consensus 134 ~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~ 186 (354)
T 1sxj_E 134 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCL 186 (354)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSE
T ss_pred CCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhce
Confidence 999999999999 999999999998864 467899999997643 23444443
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=4.1e-12 Score=137.54 Aligned_cols=147 Identities=21% Similarity=0.210 Sum_probs=91.3
Q ss_pred eeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcC-----------CCCCeeEEEECc-eecc----cchhccchhhcCCC
Q 006442 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL-----------EKPRGGEVLLGE-HNVL----PNYFEQNQAEALDL 503 (645)
Q Consensus 440 l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~-----------~~p~~G~i~~~g-~~~~----~~~~~q~~~~~l~~ 503 (645)
-++++|+++.|++++|+|+|||||||||++|++. +.|..|.+.+++ ..+. +++... .... .
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~-a~~~--~ 223 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEG-ASEG--K 223 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCC-GGGS--C
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccc-hhhh--h
Confidence 3789999999999999999999999999999998 456667776654 2211 111100 0000 0
Q ss_pred CCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHH
Q 006442 504 DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583 (645)
Q Consensus 504 ~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~ 583 (645)
.+.. ..+.. .+++..+|..+++. +.++.+||+|++|++.+|++|+.+|.+|+| |.+|......+.
T Consensus 224 ~L~~-~fl~~------~era~~lL~vvDls----~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~ 288 (416)
T 1udx_A 224 GLGL-EFLRH------IARTRVLLYVLDAA----DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVK 288 (416)
T ss_dssp CSCH-HHHHH------HTSSSEEEEEEETT----SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHH
T ss_pred hhhH-HHHHH------HHHHHhhhEEeCCc----cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHH
Confidence 0000 00000 00111223333332 456678999999999999999999999999 999997664333
Q ss_pred HHH---HhcCceEEEEe-cCHHHHH
Q 006442 584 EAI---SEYKGTVITVS-HDRYFVK 604 (645)
Q Consensus 584 ~~l---~~~~~tvi~vs-Hd~~~i~ 604 (645)
++. .+.+.++++|| |..+-+.
T Consensus 289 ~l~~~l~~~g~~vi~iSA~~g~gi~ 313 (416)
T 1udx_A 289 ALADALAREGLAVLPVSALTGAGLP 313 (416)
T ss_dssp HHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred HHHHHHHhcCCeEEEEECCCccCHH
Confidence 333 33344666655 4433333
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.16 E-value=3e-12 Score=140.05 Aligned_cols=166 Identities=12% Similarity=0.041 Sum_probs=98.6
Q ss_pred eeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc----------------chhccchhhcCCC
Q 006442 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP----------------NYFEQNQAEALDL 503 (645)
Q Consensus 440 l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~----------------~~~~q~~~~~l~~ 503 (645)
-+++||++++|++++|+|+||||||||+++|+|++++.+|+|.+.+.+... +++.|+ ..+++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~--~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQH--TGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCS--TTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecc--cCcCH
Confidence 367899999999999999999999999999999999999999997655421 112221 22334
Q ss_pred CCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHc-cCC-CeEEeeCCCCCCCHHHHHH
Q 006442 504 DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPS-TLLVLDEPTNHLDIPSKEM 581 (645)
Q Consensus 504 ~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~-~~p-~lLlLDEPt~~LD~~s~~~ 581 (645)
..++.+++..+...... . -+++..|.... ....+.+| ++++.+++++. ..| .+||...||.|.|.- ..
T Consensus 361 ~~tV~e~l~~a~~~~~D-v--VLIDTaGrl~~-~~~lm~EL----~kiv~iar~l~~~~P~evLLvLDattGq~al--~~ 430 (503)
T 2yhs_A 361 ASVIFDAIQAAKARNID-V--LIADTAGRLQN-KSHLMEEL----KKIVRVMKKLDVEAPHEVMLTIDASTGQNAV--SQ 430 (503)
T ss_dssp HHHHHHHHHHHHHTTCS-E--EEECCCCSCCC-HHHHHHHH----HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH--HH
T ss_pred HHHHHHHHHHHHhcCCC-E--EEEeCCCccch-hhhHHHHH----HHHHHHHHHhccCCCCeeEEEecCcccHHHH--HH
Confidence 45677777654211000 0 01122222100 01111122 47788888764 446 355444588886543 22
Q ss_pred HHHHHHhcCceEEEEecCHHH----------HHhhCCEEEEEeCCeE
Q 006442 582 LEEAISEYKGTVITVSHDRYF----------VKQIVNRVVEVKGSNL 618 (645)
Q Consensus 582 l~~~l~~~~~tvi~vsHd~~~----------i~~~~d~v~~l~~g~i 618 (645)
+..+-...+.|.|++|| ++. +..+.-.|.++..|.-
T Consensus 431 ak~f~~~~~itgvIlTK-LD~takgG~~lsi~~~~~~PI~fig~Ge~ 476 (503)
T 2yhs_A 431 AKLFHEAVGLTGITLTK-LDGTAKGGVIFSVADQFGIPIRYIGVGER 476 (503)
T ss_dssp HHHHHHHTCCSEEEEEC-GGGCSCCTHHHHHHHHHCCCEEEEECSSS
T ss_pred HHHHHhhcCCCEEEEEc-CCCcccccHHHHHHHHHCCCEEEEecCCC
Confidence 22322345679999999 333 3334457777766653
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.4e-10 Score=125.01 Aligned_cols=34 Identities=26% Similarity=0.291 Sum_probs=29.3
Q ss_pred EEECCcEEEEECCCCccHHHHHH--HHHcCCCCCcc
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLR--IIAGQEEPDSG 152 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~--~l~G~~~p~~G 152 (645)
-|++|++++|+||||||||||++ ++.+..+++.|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~G 209 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIG 209 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccC
Confidence 58999999999999999999999 45677777554
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=2e-14 Score=140.45 Aligned_cols=151 Identities=18% Similarity=0.228 Sum_probs=81.1
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCC-------------CCeeEEEECceecc---cchhccch-hhcCCCCCCHHHH
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEK-------------PRGGEVLLGEHNVL---PNYFEQNQ-AEALDLDKTVLET 510 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g~~~-------------p~~G~i~~~g~~~~---~~~~~q~~-~~~l~~~~tv~e~ 510 (645)
++|++++|+||||||||||+++|+|+++ |..|. ++|.++. ...+.... ...+.+..++.+|
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~n 79 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDIAAGDFIEHAEFSGN 79 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHHHHTCEEEEEEETTE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHHHcCCCEeeeeecCc
Confidence 5799999999999999999999999875 44554 2333221 00111000 0000011111111
Q ss_pred HHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHH---HHHH-HHccCCCeEEeeCCCCCCCHHHHHHHHHHH
Q 006442 511 VAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARL---AFCK-FMVKPSTLLVLDEPTNHLDIPSKEMLEEAI 586 (645)
Q Consensus 511 v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv---~lAr-al~~~p~lLlLDEPt~~LD~~s~~~l~~~l 586 (645)
+ .+ ....++...++.-.. ...+.. -.|-++.. ..++ +++.+|.+++|||||+++|.++.+.+++.|
T Consensus 80 ~-~g---~~~~~i~~~~~~~~~--~~~~~~----~~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l 149 (198)
T 1lvg_A 80 L-YG---TSKEAVRAVQAMNRI--CVLDVD----LQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRL 149 (198)
T ss_dssp E-EE---EEHHHHHHHHHTTCE--EEEECC----HHHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHH
T ss_pred c-CC---CCHHHHHHHHHcCCc--EEEECC----HHHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHH
Confidence 1 00 123344444442110 000000 01111111 1456 788899999999999999999999999888
Q ss_pred HhcCceEEEEecCHHHHHhhCCEEEEEeC
Q 006442 587 SEYKGTVITVSHDRYFVKQIVNRVVEVKG 615 (645)
Q Consensus 587 ~~~~~tvi~vsHd~~~i~~~~d~v~~l~~ 615 (645)
.....- +.++| .. ..+|+|+++++
T Consensus 150 ~~~~~~-~~~a~--~~--~~~D~iivnd~ 173 (198)
T 1lvg_A 150 AAARTD-MESSK--EP--GLFDLVIINDD 173 (198)
T ss_dssp HHHHHH-TTGGG--ST--TTCSEEEECSS
T ss_pred HHHHHH-HHHhh--cc--CCceEEEECCC
Confidence 654221 34566 22 45899887753
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-12 Score=135.05 Aligned_cols=136 Identities=14% Similarity=0.047 Sum_probs=77.8
Q ss_pred ECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHH
Q 006442 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQ 200 (645)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~ 200 (645)
+++.+++|+|++|||||||++.|.+.+.+. |. ....+.+|+|+..++ ..++++|+.......
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~-----~~~~~~iv~~D~f~~-~~~~~~~l~~~~~~~----------- 90 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YG-----GEKSIGYASIDDFYL-THEDQLKLNEQFKNN----------- 90 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-HG-----GGSCEEEEEGGGGBC-CHHHHHHHHHHTTTC-----------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-CC-----CCceEEEeccccccC-ChHHHHHHhcccccc-----------
Confidence 367899999999999999999999988753 20 012345559997653 446666653210000
Q ss_pred HHHhh--ccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcC---CCcccccccCCCCChHHHHHHHHHHHHc
Q 006442 201 KALES--AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG---FTADDGDRLVASFSSGWQMRMSLGKILL 275 (645)
Q Consensus 201 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg---l~~~~~~~~~~~LSGGqkqRvaLAraL~ 275 (645)
..+.. .+. ..+...+.+.+..+...+. -...........+||||+||+++|++..
T Consensus 91 ~l~~~~g~p~--------------------a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~ 150 (290)
T 1odf_A 91 KLLQGRGLPG--------------------THDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIK 150 (290)
T ss_dssp GGGSSSCSTT--------------------SBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEE
T ss_pred chhhhccCcc--------------------hhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceE
Confidence 00000 000 0111111222222211110 0001122334789999999999983333
Q ss_pred cCCCEEEEeCCCCCCCHHH
Q 006442 276 QDPDLLLLDEPTNHLDLDT 294 (645)
Q Consensus 276 ~~p~iLLLDEPts~LD~~~ 294 (645)
.+|+|||+||||+++|+..
T Consensus 151 ~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 151 LPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSCSEEEEEESSTTCCCCC
T ss_pred cCCCEEEEeCccccCCccc
Confidence 3999999999999999864
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.5e-13 Score=143.52 Aligned_cols=83 Identities=13% Similarity=0.216 Sum_probs=65.9
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEE-------------------ECCcEEEEECCCCccHHHHHHHHHcCCC--CCccEEE
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEV-------------------KKGEKVGLVGVNGAGKTTQLRIIAGQEE--PDSGNVI 155 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i-------------------~~Ge~~~lvG~NGsGKSTLl~~l~G~~~--p~~G~I~ 155 (645)
.|+++||++.| .++++++++.+ ++|+++||+|+||||||||+++|+|++. |++|+|.
T Consensus 37 ~i~~~~v~~~y--~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~ 114 (308)
T 1sq5_A 37 DLSLEEVAEIY--LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVE 114 (308)
T ss_dssp TCCHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred ccchHhHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEE
Confidence 48899999999 46899999988 8999999999999999999999999988 9999998
Q ss_pred E---cCCCc------eEEEEeccCccCCCCCHHHHH
Q 006442 156 K---AKSNM------KIAFLSQEFEVSMSRTVREEF 182 (645)
Q Consensus 156 ~---~~~~~------~i~~v~Q~~~~~~~~Tv~eni 182 (645)
+ ++... .++++ |.+.+....|+.+++
T Consensus 115 vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~ 149 (308)
T 1sq5_A 115 LITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLV 149 (308)
T ss_dssp EEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHH
T ss_pred EEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHH
Confidence 8 54321 24455 554444455665554
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.4e-13 Score=129.64 Aligned_cols=129 Identities=19% Similarity=0.194 Sum_probs=70.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC---eeEEEECceeccc------chhc-cchhh--cCCCCCCHHHHHHhhhccc
Q 006442 451 EKTAIIGPNGCGKSTLLKLIMGLEKPR---GGEVLLGEHNVLP------NYFE-QNQAE--ALDLDKTVLETVAEAAEDW 518 (645)
Q Consensus 451 e~v~i~G~NGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~------~~~~-q~~~~--~l~~~~tv~e~v~~~~~~~ 518 (645)
++++|+|+||||||||+++|+|+++|. .|.|.++|.++.. ..+. +.... .+...... .+.....
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~----~~i~~~~ 78 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKL----AFIRRVS 78 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEE----EEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcE----EEEecCC
Confidence 589999999999999999999999998 8999999876321 0111 00000 00000000 0000000
Q ss_pred cHH--HHHHHHhh-c-CCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeE-------EeeCCCC---CCCHHHHHHHHH
Q 006442 519 RID--DIKGLLGR-C-NFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL-------VLDEPTN---HLDIPSKEMLEE 584 (645)
Q Consensus 519 ~~~--~~~~~L~~-~-~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL-------lLDEPt~---~LD~~s~~~l~~ 584 (645)
... .+.+.+.. + ++.....+ .|||||+||++||||++.+|++. +-|.|.. .+|....+.+.+
T Consensus 79 ~~~~a~l~~~i~~~l~g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~ 154 (171)
T 2f1r_A 79 EEEGNDLDWIYERYLSDYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAE 154 (171)
T ss_dssp HHHHTCHHHHHHHHTTTCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHH
T ss_pred hhhhhCHHHHHHhhCCCCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHH
Confidence 001 23334433 2 34322212 39999999999999999998873 3355432 234455566666
Q ss_pred HHH
Q 006442 585 AIS 587 (645)
Q Consensus 585 ~l~ 587 (645)
+|.
T Consensus 155 ~i~ 157 (171)
T 2f1r_A 155 FIL 157 (171)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.12 E-value=8.3e-11 Score=124.47 Aligned_cols=128 Identities=16% Similarity=0.183 Sum_probs=70.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc-CCCCCeeEEEECceecc--------cchhccchhhcCCCCCCHHHHHHhhhccccHHH
Q 006442 452 KTAIIGPNGCGKSTLLKLIMG-LEKPRGGEVLLGEHNVL--------PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD 522 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g-~~~p~~G~i~~~g~~~~--------~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~ 522 (645)
.+.|+||||+|||||+++|++ ++.|..|.+.++|.++. .+++.+.....+.... . .......
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~ 108 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD--M-------GNNDRIV 108 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC-------------CCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhh--c-------CCcchHH
Confidence 389999999999999999999 78999999988875432 1111111100011100 0 0001112
Q ss_pred HHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCH
Q 006442 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDR 600 (645)
Q Consensus 523 ~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~--~tvi~vsHd~ 600 (645)
+++.++.+.-... .+... .||| +..+|+++|+|||++ ||..+...+.+.+.+.. .++|++||+.
T Consensus 109 ~~~~i~~~~~~~~-~~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 109 IQELLKEVAQMEQ-VDFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp HHHHHHHHTTTTC-------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred HHHHHHHHHHhcc-ccccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 2333332211000 11111 4566 778999999999999 99999999999999863 4899999997
Q ss_pred HH
Q 006442 601 YF 602 (645)
Q Consensus 601 ~~ 602 (645)
+.
T Consensus 175 ~~ 176 (354)
T 1sxj_E 175 SP 176 (354)
T ss_dssp CS
T ss_pred HH
Confidence 53
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.9e-13 Score=131.37 Aligned_cols=43 Identities=21% Similarity=0.239 Sum_probs=35.5
Q ss_pred EECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCc
Q 006442 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171 (645)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~ 171 (645)
.++|++++|+||||||||||+++|+|+++|. | ..+++++++..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g--------~~~g~v~~d~~ 61 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G--------LPAEVVPMDGF 61 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T--------CCEEEEESGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C--------CceEEEecCCC
Confidence 4789999999999999999999999999865 3 23667777643
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-11 Score=131.37 Aligned_cols=111 Identities=17% Similarity=0.054 Sum_probs=69.7
Q ss_pred eeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-CCeeEEEEC-ceec------ccchhccchhhcCCCCCCHHHHH
Q 006442 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-PRGGEVLLG-EHNV------LPNYFEQNQAEALDLDKTVLETV 511 (645)
Q Consensus 440 l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~-p~~G~i~~~-g~~~------~~~~~~q~~~~~l~~~~tv~e~v 511 (645)
++++++. .+|++++|+|+||||||||+++|+|+.+ |..|.|.+. |... ...+++|.. .+....++.++.
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~--~l~dtpgv~e~~ 282 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGG--DVIDSPGVREFG 282 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSC--EEEECHHHHTCC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCC--EecCcccHHHhh
Confidence 3344432 3799999999999999999999999999 999999876 5322 112333331 233334444431
Q ss_pred HhhhccccH----HHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHH
Q 006442 512 AEAAEDWRI----DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (645)
Q Consensus 512 ~~~~~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral 558 (645)
. ..... ..+.++++.+++. ...++.+.+|| ||+||++||+++
T Consensus 283 l---~~l~~~e~~~~~~e~l~~~gl~-~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 283 L---WHLEPEQITQGFVEFHDYLGHC-KYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp C---CCCCHHHHHHTSGGGGGGTTCS-SSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred h---cCCCHHHHHHHHHHHHHHcCCc-hhcCCCcccCC-HHHHHHHHHhcC
Confidence 1 11111 2244567777874 56788999999 999999999875
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.10 E-value=3.2e-12 Score=132.21 Aligned_cols=120 Identities=14% Similarity=0.027 Sum_probs=74.2
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchh-ccchhhcCCCCCCHHHHHHhhh------------
Q 006442 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYF-EQNQAEALDLDKTVLETVAEAA------------ 515 (645)
Q Consensus 449 ~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~-~q~~~~~l~~~~tv~e~v~~~~------------ 515 (645)
++.+++|+|++|||||||.+.|.+++.+. | .......+ .++ .. ..+.+..+++....
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~~~~~~~iv~~D--~f-~~~~~~~~~l~~~~~~~~l~~~~g~p 99 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------GGEKSIGYASID--DF-YLTHEDQLKLNEQFKNNKLLQGRGLP 99 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------GGGSCEEEEEGG--GG-BCCHHHHHHHHHHTTTCGGGSSSCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------CCCceEEEeccc--cc-cCChHHHHHHhccccccchhhhccCc
Confidence 46789999999999999999999998763 2 00001111 221 11 12334555554321
Q ss_pred ccccHHHHHHHHhhcCCCh-----h--hhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHH
Q 006442 516 EDWRIDDIKGLLGRCNFKA-----D--MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 578 (645)
Q Consensus 516 ~~~~~~~~~~~L~~~~l~~-----~--~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s 578 (645)
.......+.+.+..+.-.. . ........+||||+||+++|++...+|+|||+||||+++|+..
T Consensus 100 ~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 100 GTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp TSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred chhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence 1122344555565553210 0 1123345799999999999844333999999999999999864
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.5e-12 Score=127.91 Aligned_cols=141 Identities=16% Similarity=0.165 Sum_probs=84.1
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCC---CeeEEEECceecccchhccchhhcCCCCCCHHHHHHhhhccccHHHH
Q 006442 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKP---RGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI 523 (645)
Q Consensus 447 i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p---~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~ 523 (645)
.++|++++|+||||||||||+++|+|+++| ..|.|.++|..+...... +.. .+ .... + .........
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~-~~~-~~-~~~~----~---~~~~~~~~~ 88 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLE-PRG-LL-PRKG----A---PETFDFEGF 88 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHG-GGT-CG-GGTT----S---GGGBCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHH-Hhc-cc-ccCC----C---CchhhHHHH
Confidence 468999999999999999999999999985 578888877543211110 000 00 0000 0 001111222
Q ss_pred HHHHhhcC----CChhhhccCcCcCCHhHHHHHHHH-HHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcCceEEEEec
Q 006442 524 KGLLGRCN----FKADMLDRKVSLLSGGEKARLAFC-KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSH 598 (645)
Q Consensus 524 ~~~L~~~~----l~~~~~~~~~~~LSgGqkqrv~lA-ral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~~tvi~vsH 598 (645)
...+..+. +.....+ ....+|+||+|++++| ++++.++.++++|||.. ..+.+.-..+|++.+
T Consensus 89 ~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~~~~d~~i~vd~ 156 (208)
T 3c8u_A 89 QRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLTAIWDVSIRLEV 156 (208)
T ss_dssp HHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGGGTCSEEEEECC
T ss_pred HHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHHHhcCEEEEEeC
Confidence 22222211 1111122 2235799999999998 88888888888898841 112333457888888
Q ss_pred CHHH-HHhhCCE
Q 006442 599 DRYF-VKQIVNR 609 (645)
Q Consensus 599 d~~~-i~~~~d~ 609 (645)
+.+. +.+.+.|
T Consensus 157 ~~~~~~~R~~~R 168 (208)
T 3c8u_A 157 PMADLEARLVQR 168 (208)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 8876 5555555
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.09 E-value=6.1e-11 Score=110.34 Aligned_cols=35 Identities=31% Similarity=0.452 Sum_probs=30.5
Q ss_pred eeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCcc
Q 006442 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (645)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G 152 (645)
+++++ +|+.++|+||||||||||+++|+|.+.+ +|
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g 64 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AG 64 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TT
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cC
Confidence 55555 8999999999999999999999998876 35
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.06 E-value=5.7e-13 Score=142.97 Aligned_cols=160 Identities=16% Similarity=0.169 Sum_probs=108.5
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHc------------CCCCCccEEEEcCCC-----------c---eEEEEeccCcc
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAG------------QEEPDSGNVIKAKSN-----------M---KIAFLSQEFEV 172 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G------------~~~p~~G~I~~~~~~-----------~---~i~~v~Q~~~~ 172 (645)
.+++|..++|||+||+|||||+++|+| .+.|+.|.|.+.+.+ . ...++.+.|.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 556889999887521 1 23467788877
Q ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCccc
Q 006442 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (645)
Q Consensus 173 ~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~ 252 (645)
....+..+++...|. ..+.. ++.++.-+...
T Consensus 96 ~~~~s~~e~L~~~fl-------------~~ir~---------------------------------~d~il~Vvd~~--- 126 (392)
T 1ni3_A 96 TKGASTGVGLGNAFL-------------SHVRA---------------------------------VDAIYQVVRAF--- 126 (392)
T ss_dssp CCCCCSSSSSCHHHH-------------HHHTT---------------------------------CSEEEEEEECC---
T ss_pred ccCCcHHHHHHHHHH-------------HHHHH---------------------------------HHHHHHHHhcc---
Confidence 666555443311110 00000 00112222211
Q ss_pred ccccCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhhcCeE
Q 006442 253 GDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCTKI 326 (645)
Q Consensus 253 ~~~~~~~LSGGqkqRvaLAraL~~~p--~iLLLDEPts~LD~~~~~~l~~~L----~~~g~tvIivsHd~~~l~~~~d~i 326 (645)
.+..+..+||+. +| +++++|||+.++|+...+...+.+ .+.|.|++ +|+...+..+|+++
T Consensus 127 ~d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i 192 (392)
T 1ni3_A 127 DDAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKV 192 (392)
T ss_dssp CTTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHH
T ss_pred ccceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHH
Confidence 134556677763 99 999999999999999987776654 33466653 99999999999999
Q ss_pred E-EEcCc-eeEEeccChH
Q 006442 327 V-ETEMG-VSRTYEGNYS 342 (645)
Q Consensus 327 ~-~l~~G-~~~~~~g~~~ 342 (645)
. .|++| +. .+.+.++
T Consensus 193 ~~~L~~G~~~-~~~~~~~ 209 (392)
T 1ni3_A 193 YQYLTETKQP-IRKGDWS 209 (392)
T ss_dssp HHHHHTTCSC-GGGSCCC
T ss_pred HHHhccCCce-eecCCCC
Confidence 9 88999 65 3445543
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=5.6e-13 Score=140.80 Aligned_cols=168 Identities=20% Similarity=0.261 Sum_probs=105.9
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECC-------cEEEEECCCCccHHHHHHHHHcCC----CCCccEEEEcC--------
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKG-------EKVGLVGVNGAGKTTQLRIIAGQE----EPDSGNVIKAK-------- 158 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~G-------e~~~lvG~NGsGKSTLl~~l~G~~----~p~~G~I~~~~-------- 158 (645)
++.++++..|+...+++++++.|++| +.++|+||||+|||||+++|+|++ .+.+|.+...+
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~ 98 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILT 98 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHH
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHH
Confidence 45567777788878999999999877 889999999999999999999988 56677665322
Q ss_pred --CCceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHH
Q 006442 159 --SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (645)
Q Consensus 159 --~~~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (645)
....|.|++|...+.. ++.+++... ++.... +.+ +......
T Consensus 99 ~~~~~~v~~iDE~~~l~~--~~~e~L~~~-----------------~~~~~~--~i~----------------~~~~~~~ 141 (334)
T 1in4_A 99 SLERGDVLFIDEIHRLNK--AVEELLYSA-----------------IEDFQI--DIM----------------IGKGPSA 141 (334)
T ss_dssp HCCTTCEEEEETGGGCCH--HHHHHHHHH-----------------HHTSCC--CC------------------------
T ss_pred HccCCCEEEEcchhhcCH--HHHHHHHHH-----------------HHhccc--cee----------------eccCccc
Confidence 1236899988765532 555554211 000000 000 0000111
Q ss_pred HHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEE
Q 006442 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVII 312 (645)
Q Consensus 237 ~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIiv 312 (645)
+.+...+..+++. ...+.+..||+|++||+.++ .+||+.+.+.+.++|++ .+ +
T Consensus 142 ~~i~~~l~~~~li--~at~~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~ 198 (334)
T 1in4_A 142 KSIRIDIQPFTLV--GATTRSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD-----V 198 (334)
T ss_dssp -------CCCEEE--EEESCGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT-----C
T ss_pred ccccccCCCeEEE--EecCCcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC-----C
Confidence 2333445555553 24566789999999998655 77888887777776643 23 3
Q ss_pred ecCHHHHHhhcCe
Q 006442 313 SHDRAFLDQLCTK 325 (645)
Q Consensus 313 sHd~~~l~~~~d~ 325 (645)
+|+.+.+..++++
T Consensus 199 ~~~~~~~~~ia~~ 211 (334)
T 1in4_A 199 EIEDAAAEMIAKR 211 (334)
T ss_dssp CBCHHHHHHHHHT
T ss_pred CcCHHHHHHHHHh
Confidence 6888887777654
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.4e-12 Score=134.46 Aligned_cols=133 Identities=14% Similarity=0.024 Sum_probs=87.7
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEE-------------------ecCcEEEEEcCCCCcHHHHHHHHHcCCC--CCeeEEE
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTI-------------------ERGEKTAIIGPNGCGKSTLLKLIMGLEK--PRGGEVL 482 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i-------------------~~Ge~v~i~G~NGsGKSTLl~~l~g~~~--p~~G~i~ 482 (645)
+|+++||++.|+ ++++++++.+ .+|+++||+|+||||||||+++|+|++. |++|+|.
T Consensus 37 ~i~~~~v~~~y~--~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~ 114 (308)
T 1sq5_A 37 DLSLEEVAEIYL--PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVE 114 (308)
T ss_dssp TCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred ccchHhHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEE
Confidence 488999999994 7899999988 8999999999999999999999999998 9999999
Q ss_pred E---Cceeccc------chhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHH
Q 006442 483 L---GEHNVLP------NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLA 553 (645)
Q Consensus 483 ~---~g~~~~~------~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~ 553 (645)
+ ||..... +++ |. ..+....++.+++.... .+--.......+....+.+ +|+.
T Consensus 115 vi~~d~~~~~~~~~~~~~~v-q~--~~~~~~~~~~~~~~~~~-------------~l~~~~~~i~~P~~~~~~~--~~~~ 176 (308)
T 1sq5_A 115 LITTDGFLHPNQVLKERGLM-KK--KGFPESYDMHRLVKFVS-------------DLKSGVPNVTAPVYSHLIY--DVIP 176 (308)
T ss_dssp EEEGGGGBCCHHHHHHHTCT-TC--TTSGGGBCHHHHHHHHH-------------HHTTTCSCEEECCEETTTT--EECT
T ss_pred EEecCCccCcHHHHHhCCEe-ec--CCCCCCccHHHHHHHHH-------------HHhCCCCceeccccccccc--Cccc
Confidence 8 7754311 111 11 12223445555554321 1110001022333333433 3333
Q ss_pred HHHHHccCCCeEEeeCCCCCCCH
Q 006442 554 FCKFMVKPSTLLVLDEPTNHLDI 576 (645)
Q Consensus 554 lAral~~~p~lLlLDEPt~~LD~ 576 (645)
.+.+.+.+++++|+|.|....+.
T Consensus 177 ~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 177 DGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp TCCEEEC-CCEEEEECTTTTCCG
T ss_pred ccceecCCCCEEEECchhhCCCc
Confidence 33345677899999999988773
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=9.2e-14 Score=142.76 Aligned_cols=46 Identities=22% Similarity=0.219 Sum_probs=39.9
Q ss_pred CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcC
Q 006442 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (645)
Q Consensus 109 ~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~ 158 (645)
...+++++++++++| ++|+||||||||||+++|+|+..+ |.|.+++
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g 77 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKG 77 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEET
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEc
Confidence 345789999999999 999999999999999999999876 5676654
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.5e-10 Score=120.48 Aligned_cols=98 Identities=18% Similarity=0.267 Sum_probs=73.2
Q ss_pred eeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCCCCCCHHHHHHhhhccccHHH
Q 006442 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD 522 (645)
Q Consensus 443 vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~ 522 (645)
+++...+|++++|+|+|||||||++..|++.+.+.+|+|.+.+.+..... .. +.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~--------------a~------------eq 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA--------------AI------------EQ 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH--------------HH------------HH
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHH--------------HH------------HH
Confidence 34556789999999999999999999999999988888887655431100 00 11
Q ss_pred HHHHHhhcCCChhhhccCcCcCCHhHHHHH---HHHHHHccCCCeEEeeCCCC
Q 006442 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARL---AFCKFMVKPSTLLVLDEPTN 572 (645)
Q Consensus 523 ~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv---~lAral~~~p~lLlLDEPt~ 572 (645)
+..+++..++. . +..+|+|+.+++ +|++++..+|+++|+|||..
T Consensus 151 L~~~~~~~gl~--~----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 151 LKIWGERVGAT--V----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHHTCE--E----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHHcCCc--E----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 22344455552 1 335789999999 89999999999999999985
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=7.7e-13 Score=135.84 Aligned_cols=138 Identities=14% Similarity=0.182 Sum_probs=89.7
Q ss_pred CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccch----------hccchhhcCCCCC
Q 006442 436 DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNY----------FEQNQAEALDLDK 505 (645)
Q Consensus 436 ~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~----------~~q~~~~~l~~~~ 505 (645)
...+++++++.+++| ++|+||||||||||+++|+|...+ |.+.++|.++...+ +.+.. ....+..
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a-~~~~p~i 106 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRA-KNSAPCV 106 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHH-HHTCSEE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHH-HhcCCCe
Confidence 345789999999999 999999999999999999999877 68888876653221 11111 0111222
Q ss_pred CHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCC------------C
Q 006442 506 TVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN------------H 573 (645)
Q Consensus 506 tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~------------~ 573 (645)
++.|++........... .+......++.+..|||||+||+.|++|+..+|++| |||+. -
T Consensus 107 ~~~Deid~~~~~r~~~~-------~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~ 177 (274)
T 2x8a_A 107 IFFDEVDALCPRRSDRE-------TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGL 177 (274)
T ss_dssp EEEETCTTTCC----------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCS
T ss_pred EeeehhhhhhcccCCCc-------chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCC
Confidence 23333322111100000 011123456667789999999999999999999985 99964 3
Q ss_pred CCHHHHHHHHHHHH
Q 006442 574 LDIPSKEMLEEAIS 587 (645)
Q Consensus 574 LD~~s~~~l~~~l~ 587 (645)
-|.+.+..+.+.+.
T Consensus 178 P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 178 PPPADRLAILKTIT 191 (274)
T ss_dssp CCHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHH
Confidence 46677777776654
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=8.5e-10 Score=114.32 Aligned_cols=134 Identities=14% Similarity=0.222 Sum_probs=85.9
Q ss_pred ECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHH
Q 006442 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQ 200 (645)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~ 200 (645)
.+|++++|+|+||+||||++..|++.+.+.+|. +|.++.+++. ..+..+.+..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~--------~V~lv~~D~~---r~~a~eqL~~---------------- 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK--------KIAFITTDTY---RIAAVEQLKT---------------- 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC--------CEEEEECCCS---STTHHHHHHH----------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC--------EEEEEecCcc---cchHHHHHHH----------------
Confidence 479999999999999999999999999877772 4667777652 2333333210
Q ss_pred HHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCE
Q 006442 201 KALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280 (645)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~i 280 (645)
....+|++.. ...+ +...+.+|++ +.+|++
T Consensus 156 -----------------------------------------~~~~~gl~~~------~~~~-~~~l~~al~~--~~~~dl 185 (296)
T 2px0_A 156 -----------------------------------------YAELLQAPLE------VCYT-KEEFQQAKEL--FSEYDH 185 (296)
T ss_dssp -----------------------------------------HHTTTTCCCC------BCSS-HHHHHHHHHH--GGGSSE
T ss_pred -----------------------------------------HHHhcCCCeE------ecCC-HHHHHHHHHH--hcCCCE
Confidence 0111233210 0112 3445667775 499999
Q ss_pred EEEeCCCCCCCHHHHHHHH---HHHcc--CCCeEEEE--ecCHHHHHhhcCeEEEEcCce
Q 006442 281 LLLDEPTNHLDLDTIEWLE---GYLGK--QDVPMVII--SHDRAFLDQLCTKIVETEMGV 333 (645)
Q Consensus 281 LLLDEPts~LD~~~~~~l~---~~L~~--~g~tvIiv--sHd~~~l~~~~d~i~~l~~G~ 333 (645)
+|+| |+|+|+.....+. .++.. ...+++++ +|....+.++++++..+..+.
T Consensus 186 vIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~g 243 (296)
T 2px0_A 186 VFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQ 243 (296)
T ss_dssp EEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCE
T ss_pred EEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCE
Confidence 9999 9999987655444 34431 12234444 999999998888765444443
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-12 Score=140.18 Aligned_cols=156 Identities=15% Similarity=0.141 Sum_probs=100.0
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHc------------CCCCCeeEEEECceecc------------c--chhccchhh
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMG------------LEKPRGGEVLLGEHNVL------------P--NYFEQNQAE 499 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g------------~~~p~~G~i~~~g~~~~------------~--~~~~q~~~~ 499 (645)
.+.+|.+++|+|+||+|||||+++|+| ...|..|.+.+.|.++. + .++.+. .
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~--p 93 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDI--A 93 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECT--G
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEec--c
Confidence 456899999999999999999999999 56799999999863220 0 011111 1
Q ss_pred cCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCC----hhhhccCcCcCCHhHHHHHHHHHHHccCC--CeEEeeCCCCC
Q 006442 500 ALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK----ADMLDRKVSLLSGGEKARLAFCKFMVKPS--TLLVLDEPTNH 573 (645)
Q Consensus 500 ~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~----~~~~~~~~~~LSgGqkqrv~lAral~~~p--~lLlLDEPt~~ 573 (645)
.+....+..+++. ......+.....- ....+..+..+||+. +| +++++|||+..
T Consensus 94 Gl~~~~s~~e~L~--------~~fl~~ir~~d~il~Vvd~~~d~~i~~v~~~~------------dP~~di~ildeel~~ 153 (392)
T 1ni3_A 94 GLTKGASTGVGLG--------NAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDV------------DPIRDLSIIVDELLI 153 (392)
T ss_dssp GGCCCCCSSSSSC--------HHHHHHHTTCSEEEEEEECCCTTCSSCCSSSS------------CHHHHHHHHHHHHHH
T ss_pred ccccCCcHHHHHH--------HHHHHHHHHHHHHHHHHhccccceeeeecccc------------CcchhhhhchhhhHH
Confidence 1222222111110 0011111111100 000134444566653 88 99999999999
Q ss_pred CCHHHHHHHHHHHHhc-C---ceEEEEecCHHHHHhhCCEEE-EEeCC-eEEeeCCChh
Q 006442 574 LDIPSKEMLEEAISEY-K---GTVITVSHDRYFVKQIVNRVV-EVKGS-NLQDYAGDYN 626 (645)
Q Consensus 574 LD~~s~~~l~~~l~~~-~---~tvi~vsHd~~~i~~~~d~v~-~l~~g-~i~~~~~~~~ 626 (645)
+|+...+...+.+... . .|| ++|+...+.++|+++. +|++| ++... +.++
T Consensus 154 ~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~-~~~~ 209 (392)
T 1ni3_A 154 KDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRK-GDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGG-SCCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeec-CCCC
Confidence 9999998888888765 2 354 3999999999999999 89999 77643 4433
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=6.2e-13 Score=140.46 Aligned_cols=162 Identities=22% Similarity=0.289 Sum_probs=104.0
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecC-------cEEEEEcCCCCcHHHHHHHHHcCC----CCCeeEEEECceecc----
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERG-------EKTAIIGPNGCGKSTLLKLIMGLE----KPRGGEVLLGEHNVL---- 489 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~G-------e~v~i~G~NGsGKSTLl~~l~g~~----~p~~G~i~~~g~~~~---- 489 (645)
++.++++..|++..+++++++.|.+| +.++|+||||+|||||+++|+|.+ .+.+|.+..++.++.
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~ 98 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILT 98 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHH
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHH
Confidence 55667888888888999999999887 899999999999999999999988 666776655443321
Q ss_pred ------cchhccchhhcCCCCCCHHHHHHhhhccc----------cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHH
Q 006442 490 ------PNYFEQNQAEALDLDKTVLETVAEAAEDW----------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLA 553 (645)
Q Consensus 490 ------~~~~~q~~~~~l~~~~tv~e~v~~~~~~~----------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~ 553 (645)
..++.+. ..+. .++.+++....... ....+...+..+++. . ..+.+..||+|+|||++
T Consensus 99 ~~~~~~v~~iDE~--~~l~--~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li-~-at~~~~~Ls~~l~sR~~ 172 (334)
T 1in4_A 99 SLERGDVLFIDEI--HRLN--KAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV-G-ATTRSGLLSSPLRSRFG 172 (334)
T ss_dssp HCCTTCEEEEETG--GGCC--HHHHHHHHHHHHTSCCCC---------------CCCEEE-E-EESCGGGSCHHHHTTCS
T ss_pred HccCCCEEEEcch--hhcC--HHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE-E-ecCCcccCCHHHHHhcC
Confidence 0112221 1222 25666664332111 112233345555553 2 56778899999999986
Q ss_pred HHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhCCE
Q 006442 554 FCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNR 609 (645)
Q Consensus 554 lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~~tvi~vsHd~~~i~~~~d~ 609 (645)
++ .+||+.+.+.+.++|++... ..-++|+.+.+..++++
T Consensus 173 l~----------------~~Ld~~~~~~l~~iL~~~~~-~~~~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 173 II----------------LELDFYTVKELKEIIKRAAS-LMDVEIEDAAAEMIAKR 211 (334)
T ss_dssp EE----------------EECCCCCHHHHHHHHHHHHH-HTTCCBCHHHHHHHHHT
T ss_pred ce----------------eeCCCCCHHHHHHHHHHHHH-HcCCCcCHHHHHHHHHh
Confidence 54 78888888888888765321 01146887777666653
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.94 E-value=6.8e-11 Score=123.01 Aligned_cols=107 Identities=14% Similarity=0.121 Sum_probs=73.8
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEE---Cceecc----------cchhccchhh---cCCCCCCHHHHH
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---GEHNVL----------PNYFEQNQAE---ALDLDKTVLETV 511 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~---~g~~~~----------~~~~~q~~~~---~l~~~~tv~e~v 511 (645)
..|++++|+||||||||||+++|+ +.+|.+|+|.+ +|.++. .+++.|++.. .+.+..|+ +++
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~l 240 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-REV 240 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GGG
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HHH
Confidence 468999999999999999999999 99999999998 775542 2344443211 11145677 776
Q ss_pred H--hh--------hc-----cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHH
Q 006442 512 A--EA--------AE-----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK 556 (645)
Q Consensus 512 ~--~~--------~~-----~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAr 556 (645)
. +. .. ......+.++|+.+++.....++++..|||.+++++.|||
T Consensus 241 ~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 241 RNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 22 00 0112458899999999755778899999999899999986
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=6.5e-10 Score=115.21 Aligned_cols=130 Identities=18% Similarity=0.134 Sum_probs=87.1
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCCCCC
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~T 177 (645)
+.++++++.|+... ++++|+ +|++++|+|+||+||||++..|+|.+.+..|+|.+.+ .++. ...+
T Consensus 77 ~~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~---------~d~~--~~~~ 141 (295)
T 1ls1_A 77 TVYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA---------ADTQ--RPAA 141 (295)
T ss_dssp HHHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE---------CCSS--CHHH
T ss_pred HHHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec---------CCcc--cHhH
Confidence 45677888886543 778888 9999999999999999999999999988878776542 2221 0000
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccC
Q 006442 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (645)
Q Consensus 178 v~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~ 257 (645)
+ +.+ . .+....|++. ... .
T Consensus 142 ~-~ql--------------~-------------------------------------------~~~~~~~l~~-~~~--~ 160 (295)
T 1ls1_A 142 R-EQL--------------R-------------------------------------------LLGEKVGVPV-LEV--M 160 (295)
T ss_dssp H-HHH--------------H-------------------------------------------HHHHHHTCCE-EEC--C
T ss_pred H-HHH--------------H-------------------------------------------HhcccCCeEE-EEc--C
Confidence 0 000 0 0001112211 100 0
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCC-CCCCCHHHHHHHHHHHc
Q 006442 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEP-TNHLDLDTIEWLEGYLG 303 (645)
Q Consensus 258 ~~LSGGqkqRvaLAraL~~~p~iLLLDEP-ts~LD~~~~~~l~~~L~ 303 (645)
......+.+|.+|+++...++|++|+||| +.++|......+..+.+
T Consensus 161 ~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~ 207 (295)
T 1ls1_A 161 DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKE 207 (295)
T ss_dssp TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhh
Confidence 11233456789999998899999999999 99999988887766553
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.93 E-value=5.2e-11 Score=123.84 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=39.7
Q ss_pred EEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEE---cCCCc----------eEEEEeccCcc
Q 006442 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK---AKSNM----------KIAFLSQEFEV 172 (645)
Q Consensus 118 l~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~---~~~~~----------~i~~v~Q~~~~ 172 (645)
|++.+|++++|+||||||||||+++|+|+.+|++|+|.+ .|.+. .++|++|.|.+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~ 231 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGF 231 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSS
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCC
Confidence 455679999999999999999999999999999999997 44321 37999999864
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.92 E-value=5.7e-11 Score=123.39 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=43.5
Q ss_pred EEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEE---cCCCc-------e--EEEEeccCccCC----CCCHHHH
Q 006442 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK---AKSNM-------K--IAFLSQEFEVSM----SRTVREE 181 (645)
Q Consensus 118 l~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~---~~~~~-------~--i~~v~Q~~~~~~----~~Tv~en 181 (645)
+++.+|++++|+|+||+|||||+++|+|+.+|..|+|.+ .|... . ++|++|.|.+.. ..|+ +|
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 566789999999999999999999999999999999986 33221 1 699999997654 5688 88
Q ss_pred HHHhh
Q 006442 182 FMSAF 186 (645)
Q Consensus 182 i~~~~ 186 (645)
+...|
T Consensus 247 l~~~f 251 (307)
T 1t9h_A 247 LGYTF 251 (307)
T ss_dssp HGGGS
T ss_pred HHHHH
Confidence 85444
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-09 Score=113.17 Aligned_cols=135 Identities=14% Similarity=0.151 Sum_probs=87.4
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCCCee-EEEECceecccchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHH
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG-EVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGL 526 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G-~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~ 526 (645)
.+|++++|+|+|||||||++..|++.+.+.+| +|.+-+.+.. ..+..+.+ ..+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~--------------r~~a~eqL------------~~~ 156 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY--------------RIAAVEQL------------KTY 156 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS--------------STTHHHHH------------HHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc--------------cchHHHHH------------HHH
Confidence 47899999999999999999999999988777 5554332210 11222222 122
Q ss_pred HhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----C-ceEEEE--ecC
Q 006442 527 LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----K-GTVITV--SHD 599 (645)
Q Consensus 527 L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~-~tvi~v--sHd 599 (645)
.+..|+... . ..+ +..-+.+|+++ .+++++|+| |+|+|......+.++.+-. . .+++++ +|+
T Consensus 157 ~~~~gl~~~----~--~~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~ 225 (296)
T 2px0_A 157 AELLQAPLE----V--CYT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK 225 (296)
T ss_dssp HTTTTCCCC----B--CSS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC
T ss_pred HHhcCCCeE----e--cCC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC
Confidence 233343210 0 012 34456666654 899999999 9999988776666544322 1 245555 999
Q ss_pred HHHHHhhCCEEEEEeCCeEE
Q 006442 600 RYFVKQIVNRVVEVKGSNLQ 619 (645)
Q Consensus 600 ~~~i~~~~d~v~~l~~g~i~ 619 (645)
.+.+.++++++..+..+.++
T Consensus 226 ~~~~~~~~~~~~~l~~~giV 245 (296)
T 2px0_A 226 YEDMKHIVKRFSSVPVNQYI 245 (296)
T ss_dssp HHHHHHHTTTTSSSCCCEEE
T ss_pred HHHHHHHHHHHhcCCCCEEE
Confidence 99898888877656666665
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=3.2e-10 Score=124.42 Aligned_cols=75 Identities=21% Similarity=0.248 Sum_probs=60.5
Q ss_pred hccCcCcCCHhHHHHH--HHHHHHcc---------------CCCeEEeeCCCCCCCHHHHHHHHHHHHhcCceEEEEecC
Q 006442 537 LDRKVSLLSGGEKARL--AFCKFMVK---------------PSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHD 599 (645)
Q Consensus 537 ~~~~~~~LSgGqkqrv--~lAral~~---------------~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~~tvi~vsHd 599 (645)
.++....+||||+|.. +||.++++ .-.+++|||+ +-+|.+..+.+.+++++++--+|+++-+
T Consensus 373 ~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lglQliiatP~ 451 (483)
T 3euj_A 373 MRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLDMQLLIAAPE 451 (483)
T ss_dssp EECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred eecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcCCEEEEECcc
Confidence 3556778999999973 44444432 1257999999 9999999999999999999999999988
Q ss_pred HHHHHhhCCEEEEEe
Q 006442 600 RYFVKQIVNRVVEVK 614 (645)
Q Consensus 600 ~~~i~~~~d~v~~l~ 614 (645)
.+..++|.++.+-
T Consensus 452 --~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 --NISPERGTTYKLV 464 (483)
T ss_dssp --SCCCSSSEEEECC
T ss_pred --hhhhccCceEEEE
Confidence 6767788888774
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.91 E-value=4.1e-10 Score=117.10 Aligned_cols=42 Identities=29% Similarity=0.266 Sum_probs=36.5
Q ss_pred eeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEc
Q 006442 116 VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (645)
Q Consensus 116 vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~ 157 (645)
+++..++|++++|+|+|||||||++..|++.+.+..|+|.+.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv 138 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA 138 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence 456678899999999999999999999999998877777653
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=4.7e-10 Score=123.11 Aligned_cols=51 Identities=20% Similarity=0.135 Sum_probs=47.7
Q ss_pred eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceec
Q 006442 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (645)
Q Consensus 437 ~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~ 488 (645)
..+|+++||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~ 67 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTE 67 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEc
Confidence 4579999999999 99999999999999999999999999999999988654
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.5e-08 Score=100.98 Aligned_cols=56 Identities=11% Similarity=0.124 Sum_probs=41.4
Q ss_pred cCCCEEEEeCCCCCC--CHHH-HH---HHHHHHccCCCeEEEEecCHHH--------HHhhcCeEEEEcC
Q 006442 276 QDPDLLLLDEPTNHL--DLDT-IE---WLEGYLGKQDVPMVIISHDRAF--------LDQLCTKIVETEM 331 (645)
Q Consensus 276 ~~p~iLLLDEPts~L--D~~~-~~---~l~~~L~~~g~tvIivsHd~~~--------l~~~~d~i~~l~~ 331 (645)
.+|+++++|+|+..+ |+.. ++ .+.+.+++.|+|||+++|.... +.++||.|+.+..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 5533 22 2334456789999999998876 5678899998864
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.1e-08 Score=99.84 Aligned_cols=56 Identities=18% Similarity=0.128 Sum_probs=40.3
Q ss_pred cCCCeEEeeCCCCCC--CHHHH-HH---HHHHHHhcCceEEEEecCHHH--------HHhhCCEEEEEeC
Q 006442 560 KPSTLLVLDEPTNHL--DIPSK-EM---LEEAISEYKGTVITVSHDRYF--------VKQIVNRVVEVKG 615 (645)
Q Consensus 560 ~~p~lLlLDEPt~~L--D~~s~-~~---l~~~l~~~~~tvi~vsHd~~~--------i~~~~d~v~~l~~ 615 (645)
.+|+++++|+|+..+ |+... +. +.+.+++.+.|||+++|.... +.++||.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 55333 22 333344567799999998775 5678999999963
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.82 E-value=4.2e-10 Score=116.97 Aligned_cols=99 Identities=17% Similarity=0.106 Sum_probs=64.3
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEE---Cceecc----------cchhccchh--------------h
Q 006442 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---GEHNVL----------PNYFEQNQA--------------E 499 (645)
Q Consensus 447 i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~---~g~~~~----------~~~~~q~~~--------------~ 499 (645)
+..|++++|+|||||||||||++|+|+.+|++|+|.+ +|.++. .+++.|.+. .
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~ 245 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELK 245 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHG
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHH
Confidence 4469999999999999999999999999999999998 776541 223333321 2
Q ss_pred cCCCCCCHHHHHHhhhc---cccHHHHHHHHhhcCCChhhhccCcCcCCH
Q 006442 500 ALDLDKTVLETVAEAAE---DWRIDDIKGLLGRCNFKADMLDRKVSLLSG 546 (645)
Q Consensus 500 ~l~~~~tv~e~v~~~~~---~~~~~~~~~~L~~~~l~~~~~~~~~~~LSg 546 (645)
.++++.++ +|+.+... ......+.++|+.+++..+..++.+..||+
T Consensus 246 ~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 246 HYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp GGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 35667777 77765321 122346889999999965677888888885
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.71 E-value=6.5e-09 Score=114.20 Aligned_cols=173 Identities=10% Similarity=0.087 Sum_probs=99.6
Q ss_pred eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCee-EEEECceecccchhccch-hhcCCCCCCHHHHHHhhh
Q 006442 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG-EVLLGEHNVLPNYFEQNQ-AEALDLDKTVLETVAEAA 515 (645)
Q Consensus 438 ~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G-~i~~~g~~~~~~~~~q~~-~~~l~~~~tv~e~v~~~~ 515 (645)
+.|+++..-+++|+.+.|.|++|+|||||+..|++...+..| .+.+-+......-+.+.. .... .... +.+..+
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~--~~~~-~~l~~g- 266 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEG--NINA-QNLRTG- 266 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHH--TCCH-HHHHTS-
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHc--CCCH-HHHhcC-
Confidence 457777767999999999999999999999999987755444 344322221111111000 0000 0000 111111
Q ss_pred ccccH---HHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHc--cCCCeEEeeCCCCCCCHH--------HHHHH
Q 006442 516 EDWRI---DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV--KPSTLLVLDEPTNHLDIP--------SKEML 582 (645)
Q Consensus 516 ~~~~~---~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~--~~p~lLlLDEPt~~LD~~--------s~~~l 582 (645)
.... ..+...++.++.. ...-.....+|.+|.+ ..++.+. .+|+++|+|+++...+.. ....+
T Consensus 267 -~l~~~~~~~~~~a~~~l~~~-~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i 342 (454)
T 2r6a_A 267 -KLTPEDWGKLTMAMGSLSNA-GIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEI 342 (454)
T ss_dssp -CCCHHHHHHHHHHHHHHHSS-CEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHhcC-CEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHH
Confidence 0111 1223333333221 1222234579999987 4556655 679999999999987532 12333
Q ss_pred HHHHH----hcCceEEEEec---------C--HH--------HHHhhCCEEEEEeCCeE
Q 006442 583 EEAIS----EYKGTVITVSH---------D--RY--------FVKQIVNRVVEVKGSNL 618 (645)
Q Consensus 583 ~~~l~----~~~~tvi~vsH---------d--~~--------~i~~~~d~v~~l~~g~i 618 (645)
.+.|+ +++.+||+++| | +. .+...||.|++|..+..
T Consensus 343 ~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 343 SRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp HHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 33343 45779999999 3 22 57778999999986543
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=9.3e-10 Score=121.60 Aligned_cols=168 Identities=10% Similarity=0.056 Sum_probs=96.0
Q ss_pred eeeEEEecCcEEEEEcCCCCcHHHHHHHHHc--CCCCCeeEEEECceecccchhccc-hhhcC-C-CCCCHHH---HHHh
Q 006442 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMG--LEKPRGGEVLLGEHNVLPNYFEQN-QAEAL-D-LDKTVLE---TVAE 513 (645)
Q Consensus 442 ~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g--~~~p~~G~i~~~g~~~~~~~~~q~-~~~~l-~-~~~tv~e---~v~~ 513 (645)
-+++.+..+.++.|.|.+||||||++++|.. +..++.|.+.+...|.+..-+... .-+.+ . .-.++.+ .+..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~~~Vvtd~~~a~~~L~~ 238 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRW 238 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBSSSCBCSHHHHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCcccceeecCHHHHHHHHHH
Confidence 3678888999999999999999999999876 445555665554444332111110 00011 0 0112211 1111
Q ss_pred hhccccHHHHHHHHhhcCCChhhhc---cCcCcCCHhHHHHH----------HHHHHHccCCC-eEEeeCCCCCCCHHHH
Q 006442 514 AAEDWRIDDIKGLLGRCNFKADMLD---RKVSLLSGGEKARL----------AFCKFMVKPST-LLVLDEPTNHLDIPSK 579 (645)
Q Consensus 514 ~~~~~~~~~~~~~L~~~~l~~~~~~---~~~~~LSgGqkqrv----------~lAral~~~p~-lLlLDEPt~~LD~~s~ 579 (645)
... ..++-.+.+...|+. +..+ +....+|+||+|+. ++|+++...|. ++++||++..+|....
T Consensus 239 ~~~--EmerR~~ll~~~Gv~-~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~~~ 315 (512)
T 2ius_A 239 CVN--EMERRYKLMSALGVR-NLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGK 315 (512)
T ss_dssp HHH--HHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHcCCc-cHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhhhH
Confidence 111 111223567777763 2221 22235788988752 35666777887 8999999999884321
Q ss_pred ---HHHHHHHH---hcCceEEEEecCHH-------HHHhhCCEEEE
Q 006442 580 ---EMLEEAIS---EYKGTVITVSHDRY-------FVKQIVNRVVE 612 (645)
Q Consensus 580 ---~~l~~~l~---~~~~tvi~vsHd~~-------~i~~~~d~v~~ 612 (645)
..+.++.+ .++.++|++||+.. ...++.+||.+
T Consensus 316 ~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 316 KVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp HHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred HHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 22222222 33569999999987 45566667654
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.5e-09 Score=121.67 Aligned_cols=179 Identities=14% Similarity=0.150 Sum_probs=100.1
Q ss_pred eEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCc-cEEEEcCC-----CceEEEEeccCccCCC
Q 006442 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS-GNVIKAKS-----NMKIAFLSQEFEVSMS 175 (645)
Q Consensus 102 nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~-G~I~~~~~-----~~~i~~v~Q~~~~~~~ 175 (645)
+++.-|+...+++++++.+.+|+.++|+||||+|||||+++|+|+.++.. |.+.+.+. ...++|+++...
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~---- 114 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQG---- 114 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHH----
T ss_pred ccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchH----
Confidence 34444677789999999999999999999999999999999999999887 66666432 235788877431
Q ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCCh---hcHHHHHHhhchhcCCCccc
Q 006442 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL---DTLDAKVSKLMPELGFTADD 252 (645)
Q Consensus 176 ~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~ll~~lgl~~~~ 252 (645)
+.+.......... ..+.....+.... ......++- ........ ........+++..+...
T Consensus 115 ----~~~~e~~~~~~~~--~~~~r~~~~~~~~--~~~~~nl~v------~~~~~~~~~~v~~~~~~~~~L~G~~~~~--- 177 (604)
T 3k1j_A 115 ----RRIVEKYREKAKS--QESVKSSNMRLKS--TVLVPKLLV------DNCGRTKAPFIDATGAHAGALLGDVRHD--- 177 (604)
T ss_dssp ----HHHHHHHHHHHHH--HTCC-------------CCCEEEE------CCTTCSSCCEEECTTCCHHHHHCEECCC---
T ss_pred ----HHHHHHHHHhhcc--chhhhhhcccccc--cccccceee------ccccCCCCCEEEcCCCCHHhcCceEEec---
Confidence 1111000000000 0000000000000 000000000 00000000 00000011222222111
Q ss_pred ccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc
Q 006442 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (645)
Q Consensus 253 ~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~ 303 (645)
......+|+|++|++..++....++.+|+|||.-. |++.....|.+.|.
T Consensus 178 -~~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le 226 (604)
T 3k1j_A 178 -PFQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQ 226 (604)
T ss_dssp -CC----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHH
T ss_pred -hhhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHH
Confidence 11225699999999999999999999999999988 89999999988875
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.69 E-value=9.8e-10 Score=106.74 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=36.8
Q ss_pred eEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCC----------CceEEEEeccCcc
Q 006442 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS----------NMKIAFLSQEFEV 172 (645)
Q Consensus 117 sl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~----------~~~i~~v~Q~~~~ 172 (645)
|+++++|++++|+||||||||||+++|+|+++ .+.+.+. ...++|++|++..
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETR 62 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHH
Confidence 57888999999999999999999999999974 2333221 1246788887644
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.68 E-value=4.9e-10 Score=111.47 Aligned_cols=54 Identities=24% Similarity=0.275 Sum_probs=42.9
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcC
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~ 158 (645)
.|+++|+...|+. +|++.+ ++++|+|||||||||||++|+|++.|++|.|.+++
T Consensus 9 ~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g 62 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRN 62 (227)
T ss_dssp EEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC----
T ss_pred EEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECC
Confidence 4788888766532 466666 89999999999999999999999999999988765
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=6.3e-10 Score=122.94 Aligned_cols=174 Identities=15% Similarity=0.171 Sum_probs=94.0
Q ss_pred eeeEEEECCcEEEEECCCCccHHHHHHHHHc--CCCCCccEEEEcCCCceEEEEeccCccCCCC--CHHHHHHHhhHHHH
Q 006442 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG--QEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR--TVREEFMSAFKEEM 190 (645)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G--~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~--Tv~eni~~~~~~~~ 190 (645)
.+++.+.++..+.|.|++||||||+++.|.. ++.++.|++.+...+.+- .-++.....+.. +|.++...+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~-~el~~~~~lPhl~~~Vvtd~~~a~---- 233 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM-LELSVYEGIPHLLTEVVTDMKDAA---- 233 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS-SGGGGGTTCTTBSSSCBCSHHHHH----
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch-hhhhhhccCCcccceeecCHHHHH----
Confidence 3678888999999999999999999999876 455555655432111110 001111111111 2222211000
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCccc--ccccCCCCChHHHHHH
Q 006442 191 EIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD--GDRLVASFSSGWQMRM 268 (645)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~--~~~~~~~LSGGqkqRv 268 (645)
..+.++ . .+++++. +++...|+..-. ..+....+|+||+|+.
T Consensus 234 ---~~L~~~-----------------~---------------~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~ 277 (512)
T 2ius_A 234 ---NALRWC-----------------V---------------NEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPD 277 (512)
T ss_dssp ---HHHHHH-----------------H---------------HHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBC
T ss_pred ---HHHHHH-----------------H---------------HHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccc
Confidence 000000 0 0122222 344455543110 0111235678887652
Q ss_pred ----------HHHHHHccCCC-EEEEeCCCCCCCHHH---HHHHHHHH---ccCCCeEEEEecCHH-------HHHhhcC
Q 006442 269 ----------SLGKILLQDPD-LLLLDEPTNHLDLDT---IEWLEGYL---GKQDVPMVIISHDRA-------FLDQLCT 324 (645)
Q Consensus 269 ----------aLAraL~~~p~-iLLLDEPts~LD~~~---~~~l~~~L---~~~g~tvIivsHd~~-------~l~~~~d 324 (645)
++|+++...|. ++++||++..+|... .+.+..+. ++.|.++|++||+.. ...++.+
T Consensus 278 ~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~ 357 (512)
T 2ius_A 278 PYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPT 357 (512)
T ss_dssp TTC---------CCBCCCCCEEEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCE
T ss_pred cccccccchhccccccccCCcEEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCC
Confidence 35667778898 899999999888432 22222222 345899999999987 4567777
Q ss_pred eEEEE
Q 006442 325 KIVET 329 (645)
Q Consensus 325 ~i~~l 329 (645)
||++-
T Consensus 358 RI~lr 362 (512)
T 2ius_A 358 RIAFT 362 (512)
T ss_dssp EEEEC
T ss_pred eEEEE
Confidence 87653
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.66 E-value=2.6e-11 Score=124.36 Aligned_cols=130 Identities=14% Similarity=0.186 Sum_probs=84.9
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc----------chhc
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP----------NYFE 494 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~----------~~~~ 494 (645)
.+++++.+.|+...+++++++.+++| ++|+||||||||||+++|++... .|.+.+++.++.. .++.
T Consensus 50 ~~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~ 125 (278)
T 1iy2_A 50 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLF 125 (278)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHH
Confidence 45567777777677899999999999 99999999999999999999885 6888887654321 1112
Q ss_pred cchhhcCCCCCCHHHHHHhhhcccc------HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEee
Q 006442 495 QNQAEALDLDKTVLETVAEAAEDWR------IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568 (645)
Q Consensus 495 q~~~~~l~~~~tv~e~v~~~~~~~~------~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 568 (645)
|... ...+...+.|++........ ..+....+ ++.+..|||||+||+.+++|+..+|++ ||
T Consensus 126 ~~~~-~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~----------~~ll~~lsgg~~~~~~i~~a~t~~p~~--ld 192 (278)
T 1iy2_A 126 ETAK-RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL----------NQLLVEMDGFEKDTAIVVMAATNRPDI--LD 192 (278)
T ss_dssp HHHH-TSCSEEEEEETHHHHHCC--------CHHHHHHH----------HHHHHHHTTCCTTCCEEEEEEESCTTS--SC
T ss_pred HHHH-hcCCcEEehhhhHhhhcccccccCCcchHHHHHH----------HHHHHHHhCCCCCCCEEEEEecCCchh--CC
Confidence 2211 12233344455432111000 01111111 223345999999999999999999987 67
Q ss_pred CCC
Q 006442 569 EPT 571 (645)
Q Consensus 569 EPt 571 (645)
++.
T Consensus 193 ~~l 195 (278)
T 1iy2_A 193 PAL 195 (278)
T ss_dssp HHH
T ss_pred HhH
Confidence 664
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.65 E-value=2.4e-08 Score=105.75 Aligned_cols=68 Identities=13% Similarity=0.209 Sum_probs=46.5
Q ss_pred HHHHHHHHHccC--CCEEEEeCCCCCC----------CH----HH---HHHHHH---HHccCCCeEEEEecCHH------
Q 006442 266 MRMSLGKILLQD--PDLLLLDEPTNHL----------DL----DT---IEWLEG---YLGKQDVPMVIISHDRA------ 317 (645)
Q Consensus 266 qRvaLAraL~~~--p~iLLLDEPts~L----------D~----~~---~~~l~~---~L~~~g~tvIivsHd~~------ 317 (645)
+-+.++++++.+ |+++++|+|++.+ |+ .. .+.+.+ ++++.++|||+++|-..
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345678877654 9999999999998 32 11 222222 34667999999999654
Q ss_pred ----------HHHhhcCeEEEEcCce
Q 006442 318 ----------FLDQLCTKIVETEMGV 333 (645)
Q Consensus 318 ----------~l~~~~d~i~~l~~G~ 333 (645)
.+..+||.++.++.+.
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~ 231 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIE 231 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEE
T ss_pred CCCcccCCchHhhhccceEEEEEEee
Confidence 2567899888886654
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.65 E-value=5.7e-09 Score=100.52 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=32.3
Q ss_pred HHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHh
Q 006442 551 RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE 588 (645)
Q Consensus 551 rv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~ 588 (645)
.+.+|++++.+|+++++| ||++|..+...+.+.|.+
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 467899999999999999 999999999999888754
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.62 E-value=2.8e-12 Score=131.61 Aligned_cols=55 Identities=29% Similarity=0.405 Sum_probs=45.6
Q ss_pred EEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEc
Q 006442 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (645)
Q Consensus 99 ~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~ 157 (645)
+++++.+.|+...+++++++++++| ++|+||||||||||+++|++... .|.|.++
T Consensus 51 ~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~ 105 (278)
T 1iy2_A 51 ELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS 105 (278)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred HHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEec
Confidence 3456666676667899999999999 89999999999999999999875 6666654
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.61 E-value=9.2e-09 Score=102.25 Aligned_cols=39 Identities=21% Similarity=0.114 Sum_probs=23.3
Q ss_pred eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHH-cCCCC
Q 006442 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA-GQEEP 149 (645)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~-G~~~p 149 (645)
...+++||++++|++++|+||||||||||+++|+ |++++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 4678999999999999999999999999999999 99843
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=3.3e-11 Score=121.76 Aligned_cols=131 Identities=14% Similarity=0.171 Sum_probs=84.4
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccc----------hhc
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN----------YFE 494 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~----------~~~ 494 (645)
.+++++.+.|+...+++++++.+++| ++|+||||||||||+++|++... .|.+.+++.++... ++.
T Consensus 26 ~~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~ 101 (254)
T 1ixz_A 26 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLF 101 (254)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHH
Confidence 45667777776667899999999999 99999999999999999999875 68888876543211 111
Q ss_pred cchhhcCCCCCCHHHHHHhhhccc------cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEee
Q 006442 495 QNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568 (645)
Q Consensus 495 q~~~~~l~~~~tv~e~v~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 568 (645)
|... ...+...+.|++....... ...+....+ ++....|||||+||+.+++|+..+|++ ||
T Consensus 102 ~~~~-~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~----------~~ll~~l~g~~~~~~~i~~a~t~~p~~--ld 168 (254)
T 1ixz_A 102 ETAK-RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL----------NQLLVEMDGFEKDTAIVVMAATNRPDI--LD 168 (254)
T ss_dssp HHHT-TSSSEEEEEETHHHHHC---------CHHHHHHH----------HHHHHHHHTCCTTCCEEEEEEESCGGG--SC
T ss_pred HHHH-hcCCeEEEehhhhhhhcccCccccccchHHHHHH----------HHHHHHHhCCCCCCCEEEEEccCCchh--CC
Confidence 1110 1122333444442211100 001111111 222345899999999999999999987 68
Q ss_pred CCCC
Q 006442 569 EPTN 572 (645)
Q Consensus 569 EPt~ 572 (645)
++.-
T Consensus 169 ~~l~ 172 (254)
T 1ixz_A 169 PALL 172 (254)
T ss_dssp GGGG
T ss_pred HHHc
Confidence 7764
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.61 E-value=2.6e-09 Score=110.91 Aligned_cols=100 Identities=16% Similarity=0.064 Sum_probs=54.8
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEE---Cceecc---------cchhccchhhcCCC----CCCHHHH
Q 006442 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---GEHNVL---------PNYFEQNQAEALDL----DKTVLET 510 (645)
Q Consensus 447 i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~---~g~~~~---------~~~~~q~~~~~l~~----~~tv~e~ 510 (645)
+.+|++++|+|+||+|||||+++|+|+.+|..|+|.+ +|..+. .+++.|.+ .+.. ..++ ++
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtp--g~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTP--GFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSC--SCSSCCCTTCCH-HH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCC--CccccccccCCH-HH
Confidence 4579999999999999999999999999999999987 665431 23444442 2221 5678 88
Q ss_pred HHhhhc-----------------cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHH
Q 006442 511 VAEAAE-----------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKA 550 (645)
Q Consensus 511 v~~~~~-----------------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkq 550 (645)
+..... ......+.++|+.+++... .......|+.|++|
T Consensus 247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~-r~~~y~~lls~~~~ 302 (307)
T 1t9h_A 247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQY-RYDHYVEFMTEIKD 302 (307)
T ss_dssp HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHH-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHH-HHHHHHHHHHHHhh
Confidence 732111 0112357888999998532 33444556667776
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.4e-09 Score=108.07 Aligned_cols=57 Identities=19% Similarity=0.208 Sum_probs=43.7
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceec
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~ 488 (645)
.|+++|+...|+. +++|.+ ++++|+||||||||||+++|+|++.|++|.|.++|.++
T Consensus 9 ~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp EEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred EEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 3888998866642 566777 89999999999999999999999999999999988764
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.56 E-value=4.6e-08 Score=94.09 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=31.5
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc
Q 006442 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (645)
Q Consensus 267 RvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~ 303 (645)
.+.+|++++.+|+++++| ||++|...++.+.+.|.
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~ 187 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTIL 187 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHH
Confidence 467899999999999999 99999999999988764
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.55 E-value=8.9e-08 Score=105.10 Aligned_cols=177 Identities=16% Similarity=0.109 Sum_probs=100.2
Q ss_pred eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCCCCCHHHHHHHhhHHHH
Q 006442 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEM 190 (645)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~ 190 (645)
+.|+++..-+++|+++.|.|++|+|||||+..|++...+..| ..+.|++-+- +..+-.........
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g--------~~Vl~~s~E~------s~~~l~~r~~~~~~ 256 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN--------ENVAIFSLEM------SAQQLVMRMLCAEG 256 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS--------CCEEEEESSS------CHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC--------CcEEEEECCC------CHHHHHHHHHHHHc
Confidence 468888878999999999999999999999999987654333 1355655432 22221100000000
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHH
Q 006442 191 EIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270 (645)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaL 270 (645)
.. ...+ +.. ..+.... ..++.+.+..++..+-..+ ....+|.++.+ +.
T Consensus 257 ~~--~~~~----l~~----------------------g~l~~~~-~~~~~~a~~~l~~~~l~i~-d~~~~s~~~i~--~~ 304 (454)
T 2r6a_A 257 NI--NAQN----LRT----------------------GKLTPED-WGKLTMAMGSLSNAGIYID-DTPSIRVSDIR--AK 304 (454)
T ss_dssp TC--CHHH----HHT----------------------SCCCHHH-HHHHHHHHHHHHSSCEEEE-CCTTCCHHHHH--HH
T ss_pred CC--CHHH----Hhc----------------------CCCCHHH-HHHHHHHHHHHhcCCEEEE-CCCCCCHHHHH--HH
Confidence 00 0000 000 0000000 0122222222222111222 24678999887 45
Q ss_pred HHHHc--cCCCEEEEeCCCCCCCHH--------HHHHHHHHH----ccCCCeEEEEec---------C--HH--------
Q 006442 271 GKILL--QDPDLLLLDEPTNHLDLD--------TIEWLEGYL----GKQDVPMVIISH---------D--RA-------- 317 (645)
Q Consensus 271 AraL~--~~p~iLLLDEPts~LD~~--------~~~~l~~~L----~~~g~tvIivsH---------d--~~-------- 317 (645)
++.+. .+|+++++|+++...+.. ....+...| ++.+++||+++| + +.
T Consensus 305 ~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg 384 (454)
T 2r6a_A 305 CRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESG 384 (454)
T ss_dssp HHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTC
T ss_pred HHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccc
Confidence 56665 689999999999988532 123333333 457999999999 2 22
Q ss_pred HHHhhcCeEEEEcCce
Q 006442 318 FLDQLCTKIVETEMGV 333 (645)
Q Consensus 318 ~l~~~~d~i~~l~~G~ 333 (645)
.+.+.||.|+++..+.
T Consensus 385 ~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 385 SIEQDADIVAFLYRDD 400 (454)
T ss_dssp SHHHHCSEEEEEEETT
T ss_pred hhHhhCCEEEEEeccc
Confidence 4677899999996543
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.53 E-value=5.2e-09 Score=105.69 Aligned_cols=52 Identities=31% Similarity=0.407 Sum_probs=36.2
Q ss_pred ccEEEEeE-EEEe-CCeeeeeeeeEEEEC---CcEEEEECCCCccHHHHHHHHHcCC
Q 006442 96 SGVKLENI-SKSY-KGVTVLKDVTWEVKK---GEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 96 ~~i~i~nl-s~~y-~~~~vL~~vsl~i~~---Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
+.|+++|+ +|+| ++.++|+++||+|.+ |++++|+|++||||||++++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 46999999 9999 677899999999999 9999999999999999999999854
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=7.8e-06 Score=101.24 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=26.6
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 447 i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
+++|+.+.|.||+|+|||||+..++....
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 89999999999999999999999987653
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.51 E-value=2e-08 Score=99.76 Aligned_cols=177 Identities=10% Similarity=0.107 Sum_probs=71.1
Q ss_pred eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHH-cCCCC------------CeeEEEECceecccchhccchhhcCCCC
Q 006442 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM-GLEKP------------RGGEVLLGEHNVLPNYFEQNQAEALDLD 504 (645)
Q Consensus 438 ~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~-g~~~p------------~~G~i~~~g~~~~~~~~~q~~~~~l~~~ 504 (645)
....++||++++|++++|+||||||||||+++|+ |++++ ..|.+ +|.+ |..+..
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~----~~~~~~------- 81 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKD----YYFVDR------- 81 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTT----BEECCH-------
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCe----EEEecH-------
Confidence 3468899999999999999999999999999999 99843 33322 1111 111110
Q ss_pred CCHHHHHHhhh------------ccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHH-HHH-HHHccCCCeEEeeCC
Q 006442 505 KTVLETVAEAA------------EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARL-AFC-KFMVKPSTLLVLDEP 570 (645)
Q Consensus 505 ~tv~e~v~~~~------------~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv-~lA-ral~~~p~lLlLDEP 570 (645)
.....+.... .......+...++.-.. -..+-.+. -...-++++ .-+ ..++..|+..+++|+
T Consensus 82 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--vild~~~~-g~~~~~~~~~~~~~~v~v~~~~~~~l~~R 157 (231)
T 3lnc_A 82 -EEFLRLCSNGEIIEHAEVFGNFYGVPRKNLEDNVDKGVS--TLLVIDWQ-GAFKFMEMMREHVVSIFIMPPSMEELRRR 157 (231)
T ss_dssp -HHHHHHHHTTCEEEEEEETTEEEEEECTTHHHHHHHTCE--EEEECCHH-HHHHHHHHSGGGEEEEEEECSCHHHHHHC
T ss_pred -HHhhhhhhcCceehhhhhccccCCCCHHHHHHHHHcCCe--EEEEcCHH-HHHHHHHhcCCCeEEEEEECCcHHHHHHH
Confidence 0001110000 00001122333332110 00111000 001112322 111 234567788889999
Q ss_pred CCCCCHHHHHHHHHHHHh----c----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHHH
Q 006442 571 TNHLDIPSKEMLEEAISE----Y----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSLW 632 (645)
Q Consensus 571 t~~LD~~s~~~l~~~l~~----~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~~ 632 (645)
+...|..+.+.+.+.|.. . ...++++.||++.+.+-..+++....++.. .....++++...
T Consensus 158 l~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~~~-~~~~~~~~~~~~ 226 (231)
T 3lnc_A 158 LCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMKTC-RQVGLRELLESR 226 (231)
T ss_dssp --------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTBGG-GEESHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhccc-cCcchhhHhhcc
Confidence 999998887766655532 1 137888899988877666666544444433 234555555443
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.48 E-value=4.5e-07 Score=95.95 Aligned_cols=138 Identities=19% Similarity=0.263 Sum_probs=80.0
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEE-EECceecccchhccchhhcCCCCCCHHHHHHhhhccccHHHHH
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIK 524 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i-~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~ 524 (645)
-+++|+++.|.||+|||||||+..++.......|.+ +++... .. ...
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~------------~~----~~~---------------- 104 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH------------AL----DPE---------------- 104 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC------------CC----CHH----------------
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC------------Cc----CHH----------------
Confidence 478999999999999999999888876543333333 332210 00 000
Q ss_pred HHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccC--CCeEEeeCCCCCC----------CH---HH----HHHHHHH
Q 006442 525 GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKP--STLLVLDEPTNHL----------DI---PS----KEMLEEA 585 (645)
Q Consensus 525 ~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~--p~lLlLDEPt~~L----------D~---~s----~~~l~~~ 585 (645)
...++|+..+... .....+. .+-+.++++++.+ |+++|+|||++.+ |. .. .+.+.++
T Consensus 105 -~a~~lG~~~~~l~-i~~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L 180 (349)
T 2zr9_A 105 -YAKKLGVDTDSLL-VSQPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKM 180 (349)
T ss_dssp -HHHHTTCCGGGCE-EECCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHH
T ss_pred -HHHHcCCCHHHeE-EecCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHH
Confidence 0112232211000 0001232 2345677777654 9999999999998 32 11 1222222
Q ss_pred ---HHhcCceEEEEecCHH----------------HHHhhCCEEEEEeCCeEE
Q 006442 586 ---ISEYKGTVITVSHDRY----------------FVKQIVNRVVEVKGSNLQ 619 (645)
Q Consensus 586 ---l~~~~~tvi~vsHd~~----------------~i~~~~d~v~~l~~g~i~ 619 (645)
+++++.|||+++|-.. .+..+||.++.+..++..
T Consensus 181 ~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~ 233 (349)
T 2zr9_A 181 TGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETL 233 (349)
T ss_dssp HHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEE
T ss_pred HHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeee
Confidence 3456789999999643 256789999999876554
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.48 E-value=2e-08 Score=114.23 Aligned_cols=155 Identities=15% Similarity=0.095 Sum_probs=96.3
Q ss_pred eeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCe-eEEEECceeccc-----chhccchhh---
Q 006442 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG-GEVLLGEHNVLP-----NYFEQNQAE--- 499 (645)
Q Consensus 429 ~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~-G~i~~~g~~~~~-----~~~~q~~~~--- 499 (645)
+++.-|+...+++.+++.+..|+.+.|+||||||||||+++|++++++.. |.+.+.+..... .++++....
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~ 118 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIV 118 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHHH
T ss_pred ccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHHH
Confidence 44555677788999999999999999999999999999999999998887 677765543210 111110000
Q ss_pred -----------------cCCCCCCHHHHHHhhhc--------cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHH
Q 006442 500 -----------------ALDLDKTVLETVAEAAE--------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF 554 (645)
Q Consensus 500 -----------------~l~~~~tv~e~v~~~~~--------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~l 554 (645)
......++..|+..... .........+++.+... ......+|+|++|++..
T Consensus 119 e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~----~~~~g~~~~g~~~~i~~ 194 (604)
T 3k1j_A 119 EKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHD----PFQSGGLGTPAHERVEP 194 (604)
T ss_dssp HHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCC----CC----CCCCGGGGEEC
T ss_pred HHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEec----hhhcCCccccccccccC
Confidence 00000000001000000 00000111222221110 12224699999999998
Q ss_pred HHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHh
Q 006442 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE 588 (645)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~ 588 (645)
+++...++.+|+|||... |++.....|.++|++
T Consensus 195 g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 195 GMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 989999999999999988 899999999999984
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.47 E-value=8.3e-08 Score=91.37 Aligned_cols=60 Identities=25% Similarity=0.200 Sum_probs=46.3
Q ss_pred eee--eeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEE---------EEcC-------CCceEEEEeccCc
Q 006442 111 TVL--KDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------IKAK-------SNMKIAFLSQEFE 171 (645)
Q Consensus 111 ~vL--~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I---------~~~~-------~~~~i~~v~Q~~~ 171 (645)
..+ ++++|.+.+| +++|+||||||||||+++|.+.+.+..|.. ...+ ....|.+++|++.
T Consensus 13 ~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~ 90 (182)
T 3kta_A 13 KSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNED 90 (182)
T ss_dssp GGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred EeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCC
Confidence 356 7889999999 999999999999999999999887766532 1111 2346888888763
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.4e-08 Score=102.53 Aligned_cols=52 Identities=17% Similarity=0.355 Sum_probs=36.4
Q ss_pred cEEEEEee-eeee-CCeeceeeeeEEEec---CcEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 423 SVVTIKNL-EFGY-EDRLLFNRANLTIER---GEKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 423 ~~i~~~~v-~~~y-~~~~~l~~vsl~i~~---Ge~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
++|+++|+ ++.| ++..+|+++||+|.+ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 47999999 9999 777899999999999 9999999999999999999999865
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1.3e-09 Score=116.37 Aligned_cols=131 Identities=15% Similarity=0.064 Sum_probs=78.7
Q ss_pred eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEE-Ccee----cccchhccchhhcCCCCCCHHHHHH
Q 006442 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL-GEHN----VLPNYFEQNQAEALDLDKTVLETVA 512 (645)
Q Consensus 438 ~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~-~g~~----~~~~~~~q~~~~~l~~~~tv~e~v~ 512 (645)
.+++++++.+++|++++|+||||||||||+++|+|. .+|.+.. .... ...++++|... .+..+.+....+.
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~~~~~~~~~~lg~~~q~~~-~l~dd~~~~~~~~ 232 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNLPLDRLNFELGVAIDQFL-VVFEDVKGTGGES 232 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSSCTTTHHHHHGGGTTCSC-EEETTCCCSTTTT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEeccchhHHHHHHHhcchhH-HHHHHHHHHHHHH
Confidence 579999999999999999999999999999999995 4677665 2111 01112222110 0000000000000
Q ss_pred hhhc--cc--cHHHHHHHHh---------------hcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEE-eeCCCC
Q 006442 513 EAAE--DW--RIDDIKGLLG---------------RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV-LDEPTN 572 (645)
Q Consensus 513 ~~~~--~~--~~~~~~~~L~---------------~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl-LDEPt~ 572 (645)
.... .. ....+...++ ..-+.....+.....+++|+++|++.+.+++..|++++ ||+|+.
T Consensus 233 r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 233 RDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp TTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred hhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 0000 00 0011223332 11122234567778899999999999888899999988 999997
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=8.8e-08 Score=93.18 Aligned_cols=126 Identities=18% Similarity=0.187 Sum_probs=76.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCN 531 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~ 531 (645)
+++|+|+|||||||+.++|+++ |...++..++ .... ..+. ...+..+...+|
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~~----~~~~----~~~~---------------~~~~~~i~~~~g 55 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADVV----AREV----VAKD---------------SPLLSKIVEHFG 55 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHHH----HHHT----TCSS---------------CHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHHH----HHHH----ccCC---------------hHHHHHHHHHhC
Confidence 6899999999999999999983 4444443211 1000 0000 012233344444
Q ss_pred CChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc-CceEEEEecCHHHH--HhhCC
Q 006442 532 FKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY-KGTVITVSHDRYFV--KQIVN 608 (645)
Q Consensus 532 l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~-~~tvi~vsHd~~~i--~~~~d 608 (645)
.. . ..+.|+.+|..+++.+..+|..+..+ ++.+++..+..+.+.+... +.+||+.+|.+... ...||
T Consensus 56 ~~--~------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d 125 (206)
T 1jjv_A 56 AQ--I------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCD 125 (206)
T ss_dssp TT--C------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCS
T ss_pred HH--H------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCC
Confidence 31 1 14678999999999888887654333 3456677777777777654 34788888987665 56799
Q ss_pred EEEEEeC
Q 006442 609 RVVEVKG 615 (645)
Q Consensus 609 ~v~~l~~ 615 (645)
++++++.
T Consensus 126 ~vi~l~~ 132 (206)
T 1jjv_A 126 RILVVDV 132 (206)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 9999964
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=7.1e-08 Score=93.13 Aligned_cols=35 Identities=17% Similarity=0.141 Sum_probs=30.0
Q ss_pred HHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHh
Q 006442 552 LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE 588 (645)
Q Consensus 552 v~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~ 588 (645)
...|++++.+|+++++| ||++|......+.+.|.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 35688999999999999 999999999888877753
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.40 E-value=3.5e-07 Score=97.11 Aligned_cols=62 Identities=15% Similarity=0.112 Sum_probs=46.2
Q ss_pred ccCCCCChHHHHHHHHHHHHccCCCEEEEe-CCCCCCCHHHHHHHHHHHcc-C-CCeEEEEe--cCHH
Q 006442 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLD-EPTNHLDLDTIEWLEGYLGK-Q-DVPMVIIS--HDRA 317 (645)
Q Consensus 255 ~~~~~LSGGqkqRvaLAraL~~~p~iLLLD-EPts~LD~~~~~~l~~~L~~-~-g~tvIivs--Hd~~ 317 (645)
.++..+|+|++|++. +.+...++-++++| +|.+++|......+...+.. . +.++|+|. ||+.
T Consensus 227 ~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 227 RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 456789999998876 55555677789999 99999998876555444432 2 78899998 8864
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.38 E-value=2.6e-07 Score=101.57 Aligned_cols=112 Identities=18% Similarity=0.271 Sum_probs=72.1
Q ss_pred ceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCCCCCCHHHHHHhhhccc
Q 006442 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDW 518 (645)
Q Consensus 439 ~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~ 518 (645)
.++++++.+++| +.|+||+|+|||||+++|++..... -+.+ +.. .+.
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~--f~~i------------s~~-~~~---------------- 86 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP--FFHI------------SGS-DFV---------------- 86 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC--EEEE------------EGG-GTT----------------
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC--eeeC------------CHH-HHH----------------
Confidence 455566666666 8899999999999999999854210 0000 000 000
Q ss_pred cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCC----------CCCCCHHHHHHHHHHHHh
Q 006442 519 RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP----------TNHLDIPSKEMLEEAISE 588 (645)
Q Consensus 519 ~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP----------t~~LD~~s~~~l~~~l~~ 588 (645)
...+ =.+++++|..+++|....|.||++||+ +++.|.+..+.+.+++..
T Consensus 87 -------------------~~~~--g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ 145 (476)
T 2ce7_A 87 -------------------ELFV--GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVE 145 (476)
T ss_dssp -------------------TCCT--THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHH
T ss_pred -------------------HHHh--cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHH
Confidence 0000 026788888999999999999999999 346777766666666653
Q ss_pred c-------CceEEEEecCHHHHH
Q 006442 589 Y-------KGTVITVSHDRYFVK 604 (645)
Q Consensus 589 ~-------~~tvi~vsHd~~~i~ 604 (645)
. +..||.+||+.+.+.
T Consensus 146 ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 146 MDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHSCGGGTEEEEEEESCGGGSC
T ss_pred HhccCCCCCEEEEEecCChhhhc
Confidence 2 237899999986553
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.3e-07 Score=91.59 Aligned_cols=39 Identities=18% Similarity=0.370 Sum_probs=30.3
Q ss_pred eEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECce
Q 006442 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (645)
Q Consensus 444 sl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~ 486 (645)
|+++.+|++++|+||||||||||+++|+|+++ .+.+.+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~ 39 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISIS 39 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCC
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEece
Confidence 57788999999999999999999999999974 3555543
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.38 E-value=1.8e-07 Score=99.53 Aligned_cols=133 Identities=15% Similarity=0.243 Sum_probs=78.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-----------CCeeEEEECceecc----cchhccchhhcCCCCCCHHHHHHhh--
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLEK-----------PRGGEVLLGEHNVL----PNYFEQNQAEALDLDKTVLETVAEA-- 514 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~~-----------p~~G~i~~~g~~~~----~~~~~q~~~~~l~~~~tv~e~v~~~-- 514 (645)
+++|+|++|||||||++.|+|... |..|.+.++|.++. ++++.+.+........+..+.+..+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~ 260 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDA 260 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCE
Confidence 399999999999999999999875 56789999886542 2332211000000000011111100
Q ss_pred ----hc--ccc------HHHHHHHHhhcCCChh---hhccCcCcCCHhHHHHHHHH----HHH-ccCCCeEEeeCCCCCC
Q 006442 515 ----AE--DWR------IDDIKGLLGRCNFKAD---MLDRKVSLLSGGEKARLAFC----KFM-VKPSTLLVLDEPTNHL 574 (645)
Q Consensus 515 ----~~--~~~------~~~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqrv~lA----ral-~~~p~lLlLDEPt~~L 574 (645)
.. ... ...+...|..+++... ....++..+|+|+++++.++ +.+ ..+|++ +|+|++
T Consensus 261 il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~ 336 (364)
T 2qtf_A 261 LILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISAL 336 (364)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTT
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECC
Confidence 00 000 1123556666654211 11355677898988888877 555 434444 899999
Q ss_pred CHHHHHHHHHHHHh
Q 006442 575 DIPSKEMLEEAISE 588 (645)
Q Consensus 575 D~~s~~~l~~~l~~ 588 (645)
|......+.+.|.+
T Consensus 337 ~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 337 KRTNLELLRDKIYQ 350 (364)
T ss_dssp TTBSHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHH
Confidence 99999998888765
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=4.1e-07 Score=87.72 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=29.4
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc
Q 006442 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (645)
Q Consensus 268 vaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~ 303 (645)
...|++++.+|+++++| ||++|...++.+.+.|.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNIL 163 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHH
Confidence 35689999999999999 99999999888877653
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.31 E-value=3.2e-07 Score=100.87 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCC----------CCCCCHHHHHHHHHHHc-------cCCCeEEEEecCHHHHH
Q 006442 262 SGWQMRMSLGKILLQDPDLLLLDEP----------TNHLDLDTIEWLEGYLG-------KQDVPMVIISHDRAFLD 320 (645)
Q Consensus 262 GGqkqRvaLAraL~~~p~iLLLDEP----------ts~LD~~~~~~l~~~L~-------~~g~tvIivsHd~~~l~ 320 (645)
|++++|..+++|....|.||++||+ +++.|......+..+|. ..+..||.+||+.+.++
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 6788899999999999999999999 44667666555555442 24678889999987664
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.30 E-value=5e-07 Score=95.59 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=31.0
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEE
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I 154 (645)
=+++|+++.|+||+|||||||+..+++...+..|.|
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 378999999999999999999999998876655543
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.30 E-value=4.6e-07 Score=86.16 Aligned_cols=38 Identities=29% Similarity=0.420 Sum_probs=34.5
Q ss_pred eeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCee
Q 006442 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (645)
Q Consensus 441 ~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G 479 (645)
+++++.+.+| +++|+||||||||||+++|.+++.+..|
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~ 55 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSA 55 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcc
Confidence 6889999999 9999999999999999999998877655
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.28 E-value=4.8e-08 Score=94.86 Aligned_cols=39 Identities=26% Similarity=0.301 Sum_probs=30.6
Q ss_pred eEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCC
Q 006442 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159 (645)
Q Consensus 117 sl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~ 159 (645)
.++.++|++++|+|+||||||||+++|+|.+ |.+.+++.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d 61 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEAD 61 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGG
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccc
Confidence 3667899999999999999999999999976 77777653
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=1.9e-07 Score=90.66 Aligned_cols=57 Identities=19% Similarity=0.178 Sum_probs=39.8
Q ss_pred HHH-HHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcC
Q 006442 270 LGK-ILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM 331 (645)
Q Consensus 270 LAr-aL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~i~~l~~ 331 (645)
.|+ +++.+|++++|||+|+++|.++.+.+.+.|.+...- +.++|.. ..+|+|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-~~~a~~~----~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-MESSKEP----GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-TTGGGST----TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHhhcc----CCceEEEECCC
Confidence 456 788899999999999999999888887665421111 2345621 56899887753
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.24 E-value=6.7e-08 Score=112.80 Aligned_cols=73 Identities=15% Similarity=0.134 Sum_probs=56.7
Q ss_pred ccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCC-CCCHHHHHHHHHHHHhc-C--ceEEE-EecCHHHHHhhCCEE
Q 006442 538 DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN-HLDIPSKEMLEEAISEY-K--GTVIT-VSHDRYFVKQIVNRV 610 (645)
Q Consensus 538 ~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~-~LD~~s~~~l~~~l~~~-~--~tvi~-vsHd~~~i~~~~d~v 610 (645)
+..+.-+|+|+.+|..+++.++.+++++|+|||.. +||.+....+.+.+... . .+|++ .||+.+.+.++++..
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSC
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCC
Confidence 34566789999999999999999999999999996 99988765555544432 2 36666 599988888877643
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=5.1e-08 Score=94.69 Aligned_cols=56 Identities=21% Similarity=0.203 Sum_probs=43.1
Q ss_pred EeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEE--EEc
Q 006442 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--IKA 157 (645)
Q Consensus 101 ~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I--~~~ 157 (645)
+|+++.++.....+.+++..++|++++|+|+||||||||+++|++.+. ..|.+ .++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d 60 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILD 60 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEec
Confidence 466777777777888888889999999999999999999999999887 67876 554
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.23 E-value=9.8e-07 Score=93.67 Aligned_cols=121 Identities=18% Similarity=0.177 Sum_probs=74.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhc
Q 006442 451 EKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRC 530 (645)
Q Consensus 451 e~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~ 530 (645)
-+++|+|++|+|||||++.|+|... ..|.............+... .. . +..+
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~~~~~~---~~---------------~---------~~l~ 219 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVGQFEDG---YF---------------R---------YQII 219 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSCC-EEECCTTCSSCEEEEEEEET---TE---------------E---------EEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCeeeceeEEEEEec---Cc---------------e---------EEEE
Confidence 3799999999999999999998752 11110000000000000000 00 0 0111
Q ss_pred CCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEee-CCCCCCCHHHHHHHHHHHHh-c-CceEEEEe--cCHH
Q 006442 531 NFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD-EPTNHLDIPSKEMLEEAISE-Y-KGTVITVS--HDRY 601 (645)
Q Consensus 531 ~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD-EPt~~LD~~s~~~l~~~l~~-~-~~tvi~vs--Hd~~ 601 (645)
+. +...+.++..+|+|++|++. +.+...++-++++| +|++++|......+.+.+.. . +..+|+|. ||+.
T Consensus 220 Dt-~G~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 220 DT-PGLLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp EC-TTTSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred eC-CCccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 11 11224566779999998876 55556777889999 99999999987766666654 3 56888888 8874
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.22 E-value=5.4e-07 Score=105.15 Aligned_cols=72 Identities=14% Similarity=0.178 Sum_probs=55.1
Q ss_pred cccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHH-c--cCCCeEEE-EecCHHHHHhhcCe
Q 006442 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTN-HLDLDTIEWLEGYL-G--KQDVPMVI-ISHDRAFLDQLCTK 325 (645)
Q Consensus 254 ~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts-~LD~~~~~~l~~~L-~--~~g~tvIi-vsHd~~~l~~~~d~ 325 (645)
+..+.-+|+|+.+|..++++++.+++++|+|||.. +||......+...+ . ....+|++ +||+.+.+..+.+.
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~ 261 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFND 261 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTS
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcC
Confidence 34467889999999999999999999999999997 99977654444333 2 23456666 49998888777663
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=4.5e-08 Score=95.05 Aligned_cols=61 Identities=25% Similarity=0.290 Sum_probs=45.5
Q ss_pred EeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEE--EECceecc
Q 006442 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV--LLGEHNVL 489 (645)
Q Consensus 428 ~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i--~~~g~~~~ 489 (645)
+|++..++.....+..++..++|++++|+|+||||||||+++|++.+. ..|.+ .+++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 355556665566777788889999999999999999999999999987 67877 78776543
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=5.6e-07 Score=87.39 Aligned_cols=70 Identities=16% Similarity=0.116 Sum_probs=45.9
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc-CCCeEEEEecCHHHH--HhhcCeEEEEcC
Q 006442 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK-QDVPMVIISHDRAFL--DQLCTKIVETEM 331 (645)
Q Consensus 260 LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~-~g~tvIivsHd~~~l--~~~~d~i~~l~~ 331 (645)
.+.|+.+|..+++.++.+|+.+..+ .+.++|..+..+.+.+.. .+.++|+.+|.+... ...||.+++++-
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 3678999999999998888654333 345567767777666643 356788888987665 567999998853
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.20 E-value=6.8e-07 Score=86.50 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=29.9
Q ss_pred EEEECCcEEEEECCCCccHHHHHHHHHcCCCCCcc
Q 006442 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (645)
Q Consensus 118 l~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G 152 (645)
++|++|++++|+||||||||||+++|++.+.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999977655
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=5.1e-06 Score=91.09 Aligned_cols=57 Identities=11% Similarity=0.024 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHH
Q 006442 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 319 (645)
Q Consensus 263 GqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l 319 (645)
.|.+....+...+.+++++|+......-......++.++|++.++.+|+|.+..+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 477777888888899997777655443333445678888888889999998877654
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.15 E-value=1.1e-05 Score=85.49 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=36.4
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHcc------CCCeEEEEecCHHHHHhh
Q 006442 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK------QDVPMVIISHDRAFLDQL 322 (645)
Q Consensus 276 ~~p~iLLLDEPts~LD~~~~~~l~~~L~~------~g~tvIivsHd~~~l~~~ 322 (645)
.+|.+|++||+... |......|..++.. .+.++|+++|+.++...+
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 45789999999876 88888888887743 477899999998765544
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.2e-06 Score=84.75 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=29.9
Q ss_pred EEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCee
Q 006442 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (645)
Q Consensus 445 l~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G 479 (645)
++|.+|++++|+|+||||||||+++|++++.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999977655
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.07 E-value=1.4e-05 Score=84.92 Aligned_cols=61 Identities=16% Similarity=0.185 Sum_probs=40.4
Q ss_pred HHhhchhcCCCccc---ccccCCCCChHHHHHHHHH----HHH-ccCCCEEEEeCCCCCCCHHHHHHHHHHHc
Q 006442 239 VSKLMPELGFTADD---GDRLVASFSSGWQMRMSLG----KIL-LQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (645)
Q Consensus 239 i~~ll~~lgl~~~~---~~~~~~~LSGGqkqRvaLA----raL-~~~p~iLLLDEPts~LD~~~~~~l~~~L~ 303 (645)
+.+++..+++.... ...++..+|+|+++|+.++ +++ ..+|++ +|+|++|....+.|.+.|.
T Consensus 281 ~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~ 349 (364)
T 2qtf_A 281 SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIY 349 (364)
T ss_dssp HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHH
Confidence 34555555543111 1223577898999988877 666 444454 8999999999888887664
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.06 E-value=4.9e-06 Score=87.37 Aligned_cols=129 Identities=16% Similarity=0.160 Sum_probs=80.2
Q ss_pred eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCCCCCHHHHHHHhhHHHH
Q 006442 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEM 190 (645)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~ 190 (645)
+-|+.+.--+.+|+++.|.|++|+|||||+.-++...... ...+.|++=+ ++..+-..
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~---------g~~Vl~fSlE------ms~~ql~~------- 91 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALND---------DRGVAVFSLE------MSAEQLAL------- 91 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---------TCEEEEEESS------SCHHHHHH-------
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---------CCeEEEEeCC------CCHHHHHH-------
Confidence 3455555568999999999999999999999887643321 2345665533 23322111
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHH
Q 006442 191 EIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270 (645)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaL 270 (645)
++..... .++.. ... -..||.++.+|+..
T Consensus 92 -------Rlls~~~------------------------~v~~~-----------------~l~---~g~Ls~~e~~~l~~ 120 (338)
T 4a1f_A 92 -------RALSDLT------------------------SINMH-----------------DLE---SGRLDDDQWENLAK 120 (338)
T ss_dssp -------HHHHHHH------------------------CCCHH-----------------HHH---HTCCCHHHHHHHHH
T ss_pred -------HHHHHhh------------------------CCCHH-----------------HHh---cCCCCHHHHHHHHH
Confidence 0000000 01100 011 14699999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHH-HHccC-CCeEEEEec
Q 006442 271 GKILLQDPDLLLLDEPTNHLDLDTIEWLEG-YLGKQ-DVPMVIISH 314 (645)
Q Consensus 271 AraL~~~p~iLLLDEPts~LD~~~~~~l~~-~L~~~-g~tvIivsH 314 (645)
|...+.+++++|.|+|... +........ +.++. +..+|+|.|
T Consensus 121 a~~~l~~~~l~I~d~~~~s--i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 121 CFDHLSQKKLFFYDKSYVR--IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHSCEEEECCTTCC--HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHhcCCeEEeCCCCCc--HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 9999999999999998644 444333333 33445 678888765
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=1.1e-05 Score=85.52 Aligned_cols=43 Identities=26% Similarity=0.305 Sum_probs=33.2
Q ss_pred eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHc--CCCCCccEEE
Q 006442 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG--QEEPDSGNVI 155 (645)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G--~~~p~~G~I~ 155 (645)
..+|++++++++ .++|||++|||||||++.|+| ..++.+|.++
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 347889999998 899999999999999999999 5677777654
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.05 E-value=6.2e-07 Score=90.42 Aligned_cols=43 Identities=26% Similarity=0.247 Sum_probs=33.9
Q ss_pred eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHH---cCCCCCccEEE
Q 006442 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA---GQEEPDSGNVI 155 (645)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~---G~~~p~~G~I~ 155 (645)
..++++.+ ++|++++|+|||||||||++++|+ |+..+++|.+.
T Consensus 17 ~~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 17 RLERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp ------CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred hhhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 33444444 789999999999999999999999 99989999876
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.05 E-value=3.9e-07 Score=91.92 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=33.4
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHH---cCCCCCeeEEE
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIM---GLEKPRGGEVL 482 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~---g~~~p~~G~i~ 482 (645)
.+|++++|+|||||||||++++|+ |+..+++|.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 689999999999999999999999 99999999987
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.2e-06 Score=84.96 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=32.8
Q ss_pred eeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceec
Q 006442 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (645)
Q Consensus 442 ~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~ 488 (645)
...++.++|++++|+|+||||||||+++|++.+ |.+.+++.++
T Consensus 21 ~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~ 63 (200)
T 4eun_A 21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAF 63 (200)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGG
T ss_pred HhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccc
Confidence 334667889999999999999999999999986 8888887654
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.01 E-value=2.3e-06 Score=82.80 Aligned_cols=38 Identities=24% Similarity=0.199 Sum_probs=24.8
Q ss_pred eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCC
Q 006442 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
..+++||||++++|++++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35899999999999999999999999999999999765
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=1.6e-06 Score=82.53 Aligned_cols=35 Identities=11% Similarity=0.161 Sum_probs=29.8
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCC-CccEEEE
Q 006442 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVIK 156 (645)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~l~G~~~p-~~G~I~~ 156 (645)
+|++++|+||||||||||+++|++.+++ ..|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 6899999999999999999999998874 4555543
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=2.5e-06 Score=81.23 Aligned_cols=34 Identities=9% Similarity=0.213 Sum_probs=29.3
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCC-CeeEEE
Q 006442 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKP-RGGEVL 482 (645)
Q Consensus 449 ~Ge~v~i~G~NGsGKSTLl~~l~g~~~p-~~G~i~ 482 (645)
+|++++|+||||||||||+++|++.+++ ..|.|.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~ 38 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 38 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeee
Confidence 6899999999999999999999999874 455553
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.94 E-value=1.4e-06 Score=91.11 Aligned_cols=45 Identities=31% Similarity=0.304 Sum_probs=40.9
Q ss_pred eeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEc
Q 006442 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (645)
Q Consensus 113 L~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~ 157 (645)
+++++|++++|++++|+|+||+||||++..|++.+.+..|+|.+.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 468899999999999999999999999999999999888888764
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.94 E-value=2.1e-05 Score=83.41 Aligned_cols=123 Identities=18% Similarity=0.197 Sum_probs=71.8
Q ss_pred cCc--EEEEEcCCCCcHHHHHHHHHcCCCCCe--eEEEECceecccchhccchhhcCCCCCCHHHHHHhhhccccHHHHH
Q 006442 449 RGE--KTAIIGPNGCGKSTLLKLIMGLEKPRG--GEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIK 524 (645)
Q Consensus 449 ~Ge--~v~i~G~NGsGKSTLl~~l~g~~~p~~--G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~ 524 (645)
.+. .+.|+||+|+|||||++.+++.+.+.. ..+.++.. ...+..+ .+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~----------------~~~~~~~------------~~~ 92 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGF----------------IYRNFTA------------IIG 92 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETT----------------TCCSHHH------------HHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCc----------------cCCCHHH------------HHH
Confidence 345 799999999999999999999887653 22222210 0011111 112
Q ss_pred HHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHH--ccCCCeEEeeCCCCCCCHHHHHHHHHHHHh------cCceEEEE
Q 006442 525 GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM--VKPSTLLVLDEPTNHLDIPSKEMLEEAISE------YKGTVITV 596 (645)
Q Consensus 525 ~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral--~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~------~~~tvi~v 596 (645)
.++..++.. .+....+.++-.... ...+ ..+|.+|++||+... |......|.+++.+ .+.++|++
T Consensus 93 ~l~~~l~~~-----~~~~~~~~~~~~~~l-~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~ 165 (389)
T 1fnn_A 93 EIARSLNIP-----FPRRGLSRDEFLALL-VEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIV 165 (389)
T ss_dssp HHHHHTTCC-----CCSSCCCHHHHHHHH-HHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEE
T ss_pred HHHHHhCcc-----CCCCCCCHHHHHHHH-HHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEE
Confidence 223333321 111123333322221 1111 245889999999876 88888888888754 24589999
Q ss_pred ecCHHHHHhh
Q 006442 597 SHDRYFVKQI 606 (645)
Q Consensus 597 sHd~~~i~~~ 606 (645)
||+.++...+
T Consensus 166 ~~~~~~~~~l 175 (389)
T 1fnn_A 166 GHNDAVLNNL 175 (389)
T ss_dssp ESSTHHHHTS
T ss_pred ECCchHHHHh
Confidence 9998765544
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.94 E-value=1.8e-05 Score=83.03 Aligned_cols=106 Identities=16% Similarity=0.171 Sum_probs=66.2
Q ss_pred eeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCCCCCCHHHHHHhhhcccc
Q 006442 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWR 519 (645)
Q Consensus 440 l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~ 519 (645)
|+.+.--+++|+.+.|.|++|+|||||+..++.......+.+. ||. .+++..+.+..
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl---------~fS--------lEms~~ql~~R------ 92 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVA---------VFS--------LEMSAEQLALR------ 92 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEE---------EEE--------SSSCHHHHHHH------
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEE---------EEe--------CCCCHHHHHHH------
Confidence 4444446899999999999999999999888765422222222 221 12333222211
Q ss_pred HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCC
Q 006442 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575 (645)
Q Consensus 520 ~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD 575 (645)
+......+++ ..+.+ ..||.++.+|+..|...+.+++++|.|+|...+|
T Consensus 93 ---lls~~~~v~~-~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 93 ---ALSDLTSINM-HDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp ---HHHHHHCCCH-HHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred ---HHHHhhCCCH-HHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 1111111221 11111 3699999999999999999999999999875433
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.92 E-value=4.2e-06 Score=80.92 Aligned_cols=38 Identities=21% Similarity=0.099 Sum_probs=24.9
Q ss_pred eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 437 ~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
...++|+||++.+|++++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45799999999999999999999999999999999865
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.4e-05 Score=84.39 Aligned_cols=39 Identities=26% Similarity=0.408 Sum_probs=32.8
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEE-EEC
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLG 484 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i-~~~ 484 (645)
-|++|+++.|+||+|||||||+..++....+..|.+ +++
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 378999999999999999999999999876666654 444
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=1.3e-05 Score=85.09 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=32.8
Q ss_pred eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHc--CCCCCeeEEE
Q 006442 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG--LEKPRGGEVL 482 (645)
Q Consensus 438 ~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g--~~~p~~G~i~ 482 (645)
.+|++++++++ .++|+|++|||||||++.|.| ++++.+|.++
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 47888888888 999999999999999999999 6677777554
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=2.4e-07 Score=93.16 Aligned_cols=55 Identities=29% Similarity=0.405 Sum_probs=45.0
Q ss_pred EEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEc
Q 006442 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (645)
Q Consensus 99 ~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~ 157 (645)
+++++.+.|++..+++++++++++| ++|+||||||||||+++|+|... .|.|.++
T Consensus 27 ~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~ 81 (254)
T 1ixz_A 27 ELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS 81 (254)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred HHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEee
Confidence 3455666666667899999999999 99999999999999999999875 5666554
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.90 E-value=3.8e-08 Score=108.82 Aligned_cols=131 Identities=14% Similarity=0.182 Sum_probs=81.5
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchh----------c
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYF----------E 494 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~----------~ 494 (645)
.+++++...|....+++++++.+++| +.|+||||+|||||+++|++... .+.+.+++.++...++ .
T Consensus 41 ~~l~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lf 116 (499)
T 2dhr_A 41 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLF 116 (499)
T ss_dssp HHHHHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHT
T ss_pred HHHHHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHH
Confidence 44556655565566789999999999 99999999999999999999875 6788887765432111 1
Q ss_pred cchhhcCCCCCCHHHHHHhhhccc------cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEee
Q 006442 495 QNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568 (645)
Q Consensus 495 q~~~~~l~~~~tv~e~v~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 568 (645)
+... ...+...+.|++....... ...+....+. +....||||++|+..+++|...+|++ ||
T Consensus 117 q~a~-~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~----------~LL~~Ldg~~~~~~viviAatn~p~~--LD 183 (499)
T 2dhr_A 117 ETAK-RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN----------QLLVEMDGFEKDTAIVVMAATNRPDI--LD 183 (499)
T ss_dssp TTSS-SSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHH----------HHHHHGGGCCSSCCCEEEECCSCGGG--SC
T ss_pred HHHH-hcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHH----------HHHHHhcccccCccEEEEEecCChhh--cC
Confidence 1100 0111222333332111000 0111112221 12234889999999999999999988 89
Q ss_pred CCCC
Q 006442 569 EPTN 572 (645)
Q Consensus 569 EPt~ 572 (645)
||.-
T Consensus 184 ~aLl 187 (499)
T 2dhr_A 184 PALL 187 (499)
T ss_dssp TTTS
T ss_pred cccc
Confidence 9875
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.89 E-value=7.3e-06 Score=86.62 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=30.9
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHH---ccCCCeEEEEecCHHHHHh
Q 006442 277 DPDLLLLDEPTNHLD---LDTIEWLEGYL---GKQDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 277 ~p~iLLLDEPts~LD---~~~~~~l~~~L---~~~g~tvIivsHd~~~l~~ 321 (645)
.|.+|++||+....+ ......+.+.+ ...+.++|++||+......
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 388999999988763 44455565656 3446789999999865443
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=3.9e-06 Score=96.32 Aligned_cols=44 Identities=9% Similarity=0.046 Sum_probs=34.7
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHH
Q 006442 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 319 (645)
Q Consensus 274 L~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l 319 (645)
-..+.-++++| |+.++++.+..++... ++.+.++|++.|.++..
T Consensus 96 ~~ad~~ilVvD-~~~g~~~qt~~~~~~~-~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 96 EAADAALVAVS-AEAGVQVGTERAWTVA-ERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHCSEEEEEEE-TTTCSCHHHHHHHHHH-HHTTCCEEEEEECGGGC
T ss_pred hhcCcEEEEEc-CCcccchhHHHHHHHH-HHccCCEEEEecCCchh
Confidence 35677889999 9999999888665544 44688999999998854
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.87 E-value=5.9e-07 Score=93.76 Aligned_cols=55 Identities=24% Similarity=0.244 Sum_probs=41.9
Q ss_pred eeeeeeCCeeceeeeeEEEecCc------EEEEEcCCCCcHHHHHHHHHcCCC--CCeeEEEE
Q 006442 429 NLEFGYEDRLLFNRANLTIERGE------KTAIIGPNGCGKSTLLKLIMGLEK--PRGGEVLL 483 (645)
Q Consensus 429 ~v~~~y~~~~~l~~vsl~i~~Ge------~v~i~G~NGsGKSTLl~~l~g~~~--p~~G~i~~ 483 (645)
.+++.|+++..+++++..|..++ ++||+||||||||||+++|.+++. |.+|.+.+
T Consensus 65 ll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~ 127 (321)
T 3tqc_A 65 LLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV 127 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred HHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence 34455655666777777776666 899999999999999999999987 45666443
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.84 E-value=3.8e-07 Score=95.20 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=47.3
Q ss_pred eEEEEeCCeeeeeeeeEEEECCc------EEEEECCCCccHHHHHHHHHcCCCC--CccEEEEcCCCceEEEEeccCc
Q 006442 102 NISKSYKGVTVLKDVTWEVKKGE------KVGLVGVNGAGKTTQLRIIAGQEEP--DSGNVIKAKSNMKIAFLSQEFE 171 (645)
Q Consensus 102 nls~~y~~~~vL~~vsl~i~~Ge------~~~lvG~NGsGKSTLl~~l~G~~~p--~~G~I~~~~~~~~i~~v~Q~~~ 171 (645)
.+++.|++...|++++..+.++. ++||+||||||||||+++|.+++.+ +.|. +++++++..
T Consensus 65 ll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~---------v~~i~~D~f 133 (321)
T 3tqc_A 65 LLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN---------VEVITTDGF 133 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC---------EEEEEGGGG
T ss_pred HHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe---------EEEEeeccc
Confidence 44555667778888888887776 9999999999999999999998873 4443 556677653
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.83 E-value=3.7e-05 Score=81.06 Aligned_cols=28 Identities=14% Similarity=0.073 Sum_probs=25.8
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHcC
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
-+++|+++.|.|++|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999998874
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=6e-06 Score=81.84 Aligned_cols=36 Identities=25% Similarity=0.193 Sum_probs=31.4
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcC
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~ 158 (645)
+.++|++++|+|+||||||||+++|+|. .|+|.+.+
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~ 51 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLT 51 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEEC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEe
Confidence 4578999999999999999999999997 67777653
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.80 E-value=1e-05 Score=78.87 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=27.5
Q ss_pred ECCcEEEEECCCCccHHHHHHHHHcCCCC
Q 006442 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (645)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p 149 (645)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999887
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=6.7e-05 Score=78.33 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=25.8
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHcC
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
-+++|+++.|.|++|||||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5899999999999999999999988864
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=7.9e-05 Score=77.78 Aligned_cols=28 Identities=29% Similarity=0.310 Sum_probs=25.5
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcC
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
-+++|+++.|.|++|||||||...++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 4789999999999999999999988764
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.77 E-value=3.5e-06 Score=81.74 Aligned_cols=41 Identities=20% Similarity=0.120 Sum_probs=35.4
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECcee
Q 006442 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (645)
Q Consensus 447 i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~ 487 (645)
.++|++++|+|+||||||||+++|.+.+++.+|.+.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 46789999999999999999999999998888888765443
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.77 E-value=2.5e-05 Score=81.26 Aligned_cols=53 Identities=15% Similarity=0.112 Sum_probs=40.0
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH-HHHHHHccCCCe--EEEEec
Q 006442 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIE-WLEGYLGKQDVP--MVIISH 314 (645)
Q Consensus 260 LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~-~l~~~L~~~g~t--vIivsH 314 (645)
||.++++|+..|...+.++++++.|+|. ++..... .+..+.++.+.. +|+|.|
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~--~~~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSC--CBHHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCC--CCHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 8999999999999999999999999986 4444433 333344455777 888877
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.76 E-value=5.5e-06 Score=80.33 Aligned_cols=38 Identities=18% Similarity=0.152 Sum_probs=33.5
Q ss_pred EECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEc
Q 006442 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (645)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~ 157 (645)
.++|++++|+|+||||||||+++|++.+++..|.|.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 56789999999999999999999999988877777643
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=5.5e-06 Score=82.12 Aligned_cols=38 Identities=21% Similarity=0.163 Sum_probs=32.9
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECcee
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~ 487 (645)
+.++|++++|.|+||||||||+++|+|. .|.|.+.+.+
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~ 53 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEP 53 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence 4578999999999999999999999998 6778776654
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.75 E-value=5.7e-05 Score=81.80 Aligned_cols=39 Identities=26% Similarity=0.213 Sum_probs=32.6
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECcee
Q 006442 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (645)
Q Consensus 449 ~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~ 487 (645)
++.+++++|+|||||||++..|++.+.+..++|.+-+.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 467899999999999999999999988877777664433
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.74 E-value=9.8e-05 Score=73.22 Aligned_cols=29 Identities=38% Similarity=0.534 Sum_probs=24.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCccE
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~~p~~G~ 153 (645)
.++|+|++|+|||||++.|+|...+.++.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 47999999999999999999987766654
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.73 E-value=9e-06 Score=78.72 Aligned_cols=31 Identities=19% Similarity=0.434 Sum_probs=26.8
Q ss_pred EEEecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 445 l~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
+...+|+.++|+||||||||||++.|++.++
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4445899999999999999999999999876
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.73 E-value=3.8e-06 Score=89.59 Aligned_cols=43 Identities=21% Similarity=0.220 Sum_probs=38.9
Q ss_pred eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEE
Q 006442 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156 (645)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~ 156 (645)
.+++++++.+++|++++|+||||||||||+++|+|. ..|.+..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~ 199 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALN 199 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEEC
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEE
Confidence 588999999999999999999999999999999995 4677765
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.73 E-value=1.6e-05 Score=77.52 Aligned_cols=29 Identities=31% Similarity=0.517 Sum_probs=27.5
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p 476 (645)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999987
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=1.4e-05 Score=91.80 Aligned_cols=134 Identities=13% Similarity=0.066 Sum_probs=72.4
Q ss_pred eEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC--CeeEEEECceecccchhccchhhcCCCCCCHHHHHHhhhccccHH
Q 006442 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP--RGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRID 521 (645)
Q Consensus 444 sl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p--~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~ 521 (645)
++.+++|.+++|+|++|+|||||++.|++...+ ..|+| .+|..+.. +.............. ...-.+.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d-~~~~e~~~giti~~~------~~~~~~~-- 72 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTD-YTPEAKLHRTTVRTG------VAPLLFR-- 72 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSC-CSHHHHHTTSCCSCE------EEEEEET--
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCccccc-CCHHHHhcCCeEEec------ceEEeeC--
Confidence 456788999999999999999999999977654 55666 33322211 000000000000000 0000000
Q ss_pred HHHHHHhhcCCChhhhccCcC-cCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCH
Q 006442 522 DIKGLLGRCNFKADMLDRKVS-LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDR 600 (645)
Q Consensus 522 ~~~~~L~~~~l~~~~~~~~~~-~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~~tvi~vsHd~ 600 (645)
+..-..+|.+.. .++ ......+-..+.-++++| |+++++..+...+.. +...+.++|+|.|.+
T Consensus 73 ---------~~~~nliDTpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~~~-~~~~~ip~ilv~NKi 136 (665)
T 2dy1_A 73 ---------GHRVFLLDAPGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTERAWTV-AERLGLPRMVVVTKL 136 (665)
T ss_dssp ---------TEEEEEEECCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHHHHHH-HHHTTCCEEEEEECG
T ss_pred ---------CEEEEEEeCCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHHHHHH-HHHccCCEEEEecCC
Confidence 000112232211 111 122233335678899999 999999988865544 445677889999988
Q ss_pred HHH
Q 006442 601 YFV 603 (645)
Q Consensus 601 ~~i 603 (645)
+..
T Consensus 137 D~~ 139 (665)
T 2dy1_A 137 DKG 139 (665)
T ss_dssp GGC
T ss_pred chh
Confidence 853
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.72 E-value=1.1e-05 Score=78.03 Aligned_cols=32 Identities=16% Similarity=0.303 Sum_probs=26.8
Q ss_pred eEEEECCcEEEEECCCCccHHHHHHHHHcCCC
Q 006442 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 117 sl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
|+...+|++++|+||||||||||++.|++.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34455899999999999999999999999876
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.69 E-value=5.3e-06 Score=89.73 Aligned_cols=172 Identities=15% Similarity=0.019 Sum_probs=93.4
Q ss_pred eeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-cchhccc----hhhcCC-
Q 006442 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-PNYFEQN----QAEALD- 502 (645)
Q Consensus 429 ~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-~~~~~q~----~~~~l~- 502 (645)
+++..|++.. ++++|+ +|++++++|+|||||||++..|++.+.+..|+|.+.+.++. +....|- ...+++
T Consensus 81 ~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v 156 (425)
T 2ffh_A 81 ALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV 156 (425)
T ss_dssp HHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccE
Confidence 4555665433 567777 89999999999999999999999999988888887655542 2221110 000110
Q ss_pred -CCCCHHHHHHhhhccccHHHH-HHHHhhc---CCChhhhccCcCc--CCHhHHHHHHHHHHHccCCCeEEeeCCCCCCC
Q 006442 503 -LDKTVLETVAEAAEDWRIDDI-KGLLGRC---NFKADMLDRKVSL--LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575 (645)
Q Consensus 503 -~~~tv~e~v~~~~~~~~~~~~-~~~L~~~---~l~~~~~~~~~~~--LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD 575 (645)
+..+ .....++ ...++.+ ++.--..|.++.. -..-..+...+++++..++-+|++| ++.+.|
T Consensus 157 ~~~~~----------~~~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvD-a~tgq~ 225 (425)
T 2ffh_A 157 LEVMD----------GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD-AMTGQE 225 (425)
T ss_dssp EECCT----------TCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE-GGGTTH
T ss_pred EecCC----------CCCHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEe-ccchHH
Confidence 0000 0011111 2222221 2211234555431 1234566777788886666788888 455644
Q ss_pred HHHHHHHHHHHHhcCceEEEEecC-H--------HHHHhhCCEEEEEeCCe
Q 006442 576 IPSKEMLEEAISEYKGTVITVSHD-R--------YFVKQIVNRVVEVKGSN 617 (645)
Q Consensus 576 ~~s~~~l~~~l~~~~~tvi~vsHd-~--------~~i~~~~d~v~~l~~g~ 617 (645)
... .+..+-...+.+-|++|+- . +......-.|.++..|.
T Consensus 226 av~--~a~~f~~~l~i~GVIlTKlD~~~~~g~alsi~~~~g~PI~flg~Ge 274 (425)
T 2ffh_A 226 ALS--VARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSE 274 (425)
T ss_dssp HHH--HHHHHHHHTCCCEEEEESGGGCSSCHHHHHHHHHHCCCEEEEECSS
T ss_pred HHH--HHHHHHhcCCceEEEEeCcCCcccHHHHHHHHHHHCCCEEEEeCCC
Confidence 432 2222222345566677763 2 12233345677776554
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=2e-05 Score=76.38 Aligned_cols=41 Identities=24% Similarity=0.255 Sum_probs=34.5
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCcc
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~ 172 (645)
++++|.+++|+|++|||||||++.|++.++ .+.+++|+..+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-------------~~~~i~~D~~~ 57 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP-------------NCSVISQDDFF 57 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST-------------TEEEEEGGGGB
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC-------------CcEEEeCCccc
Confidence 567899999999999999999999999764 26677787654
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.67 E-value=5e-06 Score=86.81 Aligned_cols=49 Identities=24% Similarity=0.301 Sum_probs=42.8
Q ss_pred eeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceec
Q 006442 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (645)
Q Consensus 440 l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~ 488 (645)
+++++|++.+|++++|+|+||+||||++..|++.+.+.+|+|.+.+.++
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3678888899999999999999999999999999998889988866553
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.67 E-value=2e-05 Score=83.20 Aligned_cols=124 Identities=23% Similarity=0.229 Sum_probs=66.5
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCCCe----eEEEECceecccchhccchhhcCCCCCCHHHHHHhhhccccHHHH
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG----GEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI 523 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~----G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~ 523 (645)
..+..+.|+||+|+|||||++.+++.+.+.. ..+.++... . . +..+ ..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~----------~--~----~~~~------------~~ 94 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ----------I--D----TPYR------------VL 94 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH----------H--C----SHHH------------HH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC----------C--C----CHHH------------HH
Confidence 4577899999999999999999998765432 222222100 0 0 1110 11
Q ss_pred HHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHH--ccCCCeEEeeCCCCCCC---HHHHHHHHHHHHhc---CceEEE
Q 006442 524 KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM--VKPSTLLVLDEPTNHLD---IPSKEMLEEAISEY---KGTVIT 595 (645)
Q Consensus 524 ~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral--~~~p~lLlLDEPt~~LD---~~s~~~l~~~l~~~---~~tvi~ 595 (645)
..++..++.. .+....+..+.... +..++ ...|.+|++||+....+ ......+.+.+... +.++|+
T Consensus 95 ~~i~~~l~~~-----~~~~~~~~~~~~~~-l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~ 168 (386)
T 2qby_A 95 ADLLESLDVK-----VPFTGLSIAELYRR-LVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIG 168 (386)
T ss_dssp HHHTTTTSCC-----CCSSSCCHHHHHHH-HHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEE
T ss_pred HHHHHHhCCC-----CCCCCCCHHHHHHH-HHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEE
Confidence 2222323321 01112333332211 11222 23388999999988663 34444555555432 358999
Q ss_pred EecCHHHHHh
Q 006442 596 VSHDRYFVKQ 605 (645)
Q Consensus 596 vsHd~~~i~~ 605 (645)
+||+.++...
T Consensus 169 ~~~~~~~~~~ 178 (386)
T 2qby_A 169 ITNDVKFVDL 178 (386)
T ss_dssp EESCGGGGGG
T ss_pred EECCCChHhh
Confidence 9998865443
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=1.1e-05 Score=75.83 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=31.5
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceec
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~ 488 (645)
.+|++++|+|+|||||||+++.|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence 468999999999999999999999875 7777876554
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00013 Score=76.77 Aligned_cols=28 Identities=25% Similarity=0.177 Sum_probs=25.6
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcC
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
-|++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999998874
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00027 Score=72.22 Aligned_cols=114 Identities=18% Similarity=0.171 Sum_probs=68.8
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHh
Q 006442 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLG 528 (645)
Q Consensus 449 ~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~ 528 (645)
++..+.|.||+|+|||||+++|++..... -+.++. . .+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~--~~~i~~------------~-~l--------------------------- 90 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSAT--FLNISA------------A-SL--------------------------- 90 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCE--EEEEES------------T-TT---------------------------
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCC--eEEeeH------------H-HH---------------------------
Confidence 45678999999999999999999865210 011100 0 00
Q ss_pred hcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHH----------HHHHHHHHHhcC-------c
Q 006442 529 RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS----------KEMLEEAISEYK-------G 591 (645)
Q Consensus 529 ~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s----------~~~l~~~l~~~~-------~ 591 (645)
....+ -+++++.+..++.+...+|.+|++||+.+-++... ...+...+.... .
T Consensus 91 --------~~~~~--~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v 160 (297)
T 3b9p_A 91 --------TSKYV--GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRI 160 (297)
T ss_dssp --------SSSSC--SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CE
T ss_pred --------hhccc--chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcE
Confidence 00000 23567777788888888999999999987765322 223444444432 2
Q ss_pred eEEEEecCHHH----HHhhCCEEEEEe
Q 006442 592 TVITVSHDRYF----VKQIVNRVVEVK 614 (645)
Q Consensus 592 tvi~vsHd~~~----i~~~~d~v~~l~ 614 (645)
.||.+|++.+. +.+-+++++.+.
T Consensus 161 ~vi~~tn~~~~l~~~l~~R~~~~i~~~ 187 (297)
T 3b9p_A 161 VVLAATNRPQELDEAALRRFTKRVYVS 187 (297)
T ss_dssp EEEEEESCGGGBCHHHHHHCCEEEECC
T ss_pred EEEeecCChhhCCHHHHhhCCeEEEeC
Confidence 57778887532 222366665553
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.62 E-value=1e-05 Score=90.57 Aligned_cols=43 Identities=30% Similarity=0.324 Sum_probs=37.8
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCee-EEE-ECceec
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG-EVL-LGEHNV 488 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G-~i~-~~g~~~ 488 (645)
.+++|++++|+|+||||||||+++|++.+.|.+| .+. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 5789999999999999999999999999999887 674 787554
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=1.9e-05 Score=74.21 Aligned_cols=33 Identities=24% Similarity=0.255 Sum_probs=28.1
Q ss_pred ECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEc
Q 006442 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (645)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~ 157 (645)
.+|++++|+|+|||||||++++|++.+ |.+.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~ 38 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLD 38 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEe
Confidence 468999999999999999999999864 656554
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.58 E-value=1.3e-05 Score=89.69 Aligned_cols=40 Identities=30% Similarity=0.354 Sum_probs=35.3
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHcCCCCCcc-EEE-EcC
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG-NVI-KAK 158 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G-~I~-~~~ 158 (645)
.+++|++++|+|+||||||||+++|+|.+.|++| +|. +++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 5789999999999999999999999999999886 664 553
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.57 E-value=6.7e-07 Score=94.39 Aligned_cols=59 Identities=19% Similarity=0.158 Sum_probs=48.7
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEE
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~ 156 (645)
++.++..+.|+...+++++++.+.+|.+++|+|++|+|||||++.|+|.+.+..|+|.+
T Consensus 31 ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v 89 (341)
T 2p67_A 31 VESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 89 (341)
T ss_dssp HHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred hhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 44455556666667889999999999999999999999999999999998777666543
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.55 E-value=1.1e-06 Score=92.58 Aligned_cols=58 Identities=19% Similarity=0.133 Sum_probs=47.5
Q ss_pred EeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECc
Q 006442 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (645)
Q Consensus 428 ~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g 485 (645)
+++.+.|+.+.+++++++.+.+|.+++|+|++|+|||||++.|++.+.+..|++.+-+
T Consensus 34 ~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~ 91 (341)
T 2p67_A 34 RHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 91 (341)
T ss_dssp CCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 3444555556678888999999999999999999999999999999877777766543
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.53 E-value=1.3e-05 Score=84.85 Aligned_cols=52 Identities=27% Similarity=0.340 Sum_probs=46.9
Q ss_pred cEEEEEeeeeeeCC-eecee--------------eeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 423 SVVTIKNLEFGYED-RLLFN--------------RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 423 ~~i~~~~v~~~y~~-~~~l~--------------~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
.-+.|+|+++.|+. +..++ |+.+.|.+|++++|+|++|||||||++.|++..
T Consensus 132 ~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 132 NKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 34889999999985 56788 899999999999999999999999999999875
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.52 E-value=3.2e-05 Score=72.41 Aligned_cols=27 Identities=41% Similarity=0.415 Sum_probs=24.6
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCC
Q 006442 122 KGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
.|.+++|+|+||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 468899999999999999999999764
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.52 E-value=8.6e-05 Score=80.82 Aligned_cols=50 Identities=12% Similarity=0.201 Sum_probs=33.4
Q ss_pred HHHHHHccCCCEEE-EeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHH
Q 006442 269 SLGKILLQDPDLLL-LDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 319 (645)
Q Consensus 269 aLAraL~~~p~iLL-LDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l 319 (645)
..+...+.+++++| +-+.++++.... .++.++|++.++.+|++-...+..
T Consensus 74 ~~~~~~~~~ad~il~vvD~~~~~~~~d-~~~~~~l~~~~~pvilv~NK~D~~ 124 (436)
T 2hjg_A 74 QQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYRTKKPVVLAVNKLDNT 124 (436)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHTTCCSCEEEEEECCCC-
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHH-HHHHHHHHHcCCCEEEEEECccCc
Confidence 44555567777444 556888888654 467778877788888887765544
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00018 Score=73.53 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=26.4
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 006442 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLDL 292 (645)
Q Consensus 261 SGGqkqRvaLAraL~~~p~iLLLDEPts~LD~ 292 (645)
+++++.|..++.+...+|.+|++||+.+-++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSE 128 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBC
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccc
Confidence 45777888888888889999999999887654
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00022 Score=70.59 Aligned_cols=42 Identities=12% Similarity=0.159 Sum_probs=32.2
Q ss_pred ccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcC-----ceEEEEec-CH
Q 006442 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK-----GTVITVSH-DR 600 (645)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~-----~tvi~vsH-d~ 600 (645)
..+++++|+..+.+.++......+..++..++ .++|+++| |+
T Consensus 110 ~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~ 157 (239)
T 3lxx_A 110 SPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDD 157 (239)
T ss_dssp TTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGG
T ss_pred CCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCcc
Confidence 35789999999988998887777777765442 38888998 43
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=5.6e-05 Score=69.73 Aligned_cols=30 Identities=37% Similarity=0.530 Sum_probs=24.7
Q ss_pred eeeeEEEECCcEEEEECCCCccHHHHHHHHH
Q 006442 114 KDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144 (645)
Q Consensus 114 ~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~ 144 (645)
++..+++.+| +.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3445566665 99999999999999999986
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.49 E-value=3.8e-05 Score=71.92 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=25.4
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 006442 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (645)
Q Consensus 449 ~Ge~v~i~G~NGsGKSTLl~~l~g~~~p 476 (645)
.|++++|+|+||||||||+++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5788999999999999999999998754
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.48 E-value=1.2e-05 Score=85.03 Aligned_cols=51 Identities=24% Similarity=0.268 Sum_probs=46.6
Q ss_pred cEEEEeEEEEeCCe-eeee--------------eeeEEEECCcEEEEECCCCccHHHHHHHHHcCC
Q 006442 97 GVKLENISKSYKGV-TVLK--------------DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 97 ~i~i~nls~~y~~~-~vL~--------------~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
.+.++|+++.|+.. ..|+ |+++.|.+|+.++|+||+|+|||||++.|++.+
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 58899999999864 5888 899999999999999999999999999998865
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00029 Score=76.27 Aligned_cols=35 Identities=31% Similarity=0.158 Sum_probs=29.7
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEE
Q 006442 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156 (645)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~ 156 (645)
++.+++++|++||||||++..|++.+.+..++|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 57899999999999999999999988776555543
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00012 Score=67.49 Aligned_cols=31 Identities=39% Similarity=0.606 Sum_probs=24.8
Q ss_pred eeeeEEEecCcEEEEEcCCCCcHHHHHHHHHc
Q 006442 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 441 ~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g 472 (645)
++.++.+.+| ..+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3445566554 899999999999999999863
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.45 E-value=1.6e-05 Score=82.23 Aligned_cols=61 Identities=15% Similarity=0.107 Sum_probs=39.8
Q ss_pred CChHHHHHHHHHHHHc--cCCCEEEEeCCCCCCCHHH-HHHHHHHH----ccCCC--eEEEEecCHHHHHhhcCeEE
Q 006442 260 FSSGWQMRMSLGKILL--QDPDLLLLDEPTNHLDLDT-IEWLEGYL----GKQDV--PMVIISHDRAFLDQLCTKIV 327 (645)
Q Consensus 260 LSGGqkqRvaLAraL~--~~p~iLLLDEPts~LD~~~-~~~l~~~L----~~~g~--tvIivsHd~~~l~~~~d~i~ 327 (645)
+|+|++ .+++.+. ..|.++++ |.+|... ...+.+.+ +..+. .+.+++|+-+-+..+++.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 898886 4566665 68889998 8999865 44443332 33443 55566777776666666554
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00017 Score=74.98 Aligned_cols=130 Identities=11% Similarity=0.097 Sum_probs=70.8
Q ss_pred ceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCCCCCCHHHHHHhhhccc
Q 006442 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDW 518 (645)
Q Consensus 439 ~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~ 518 (645)
-|+.+.--+++|+.+.|.|++|+|||||+..++...-.....+ .||. .+++..+.+..
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~v---------l~~s--------lE~s~~~l~~R----- 114 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVV---------NLHS--------LEMGKKENIKR----- 114 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEE---------EEEE--------SSSCHHHHHHH-----
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeE---------EEEE--------CCCCHHHHHHH-----
Confidence 3555544589999999999999999999888874321110111 1211 12222222111
Q ss_pred cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHH-HHHHHHHhcCce--EEE
Q 006442 519 RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE-MLEEAISEYKGT--VIT 595 (645)
Q Consensus 519 ~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~-~l~~~l~~~~~t--vi~ 595 (645)
+.... .++........-..||.++++|+..|...+.++++++.|+|.. ++.... .+.++.++.+.. +|+
T Consensus 115 ----~~~~~--~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~--~~~~i~~~i~~l~~~~~~~~~lVV 186 (315)
T 3bh0_A 115 ----LIVTA--GSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQ--SVNYIWSKTRQTKRKNPGKRVIVM 186 (315)
T ss_dssp ----HHHHH--TTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCC--BHHHHHHHHHHHHHTSSSCCEEEE
T ss_pred ----HHHHH--cCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCC--CHHHHHHHHHHHHHhcCCCCeEEE
Confidence 11111 1221111111101288899999998888888888999888863 333322 233333444444 666
Q ss_pred Eec
Q 006442 596 VSH 598 (645)
Q Consensus 596 vsH 598 (645)
|=|
T Consensus 187 ID~ 189 (315)
T 3bh0_A 187 IDY 189 (315)
T ss_dssp EEC
T ss_pred EeC
Confidence 643
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.40 E-value=2.2e-06 Score=88.72 Aligned_cols=61 Identities=16% Similarity=0.089 Sum_probs=41.3
Q ss_pred CCHhHHHHHHHHHHHc--cCCCeEEeeCCCCCCCHHH-HHHHHHHHHh----cCc--eEEEEecCHHHHHhhCCEEE
Q 006442 544 LSGGEKARLAFCKFMV--KPSTLLVLDEPTNHLDIPS-KEMLEEAISE----YKG--TVITVSHDRYFVKQIVNRVV 611 (645)
Q Consensus 544 LSgGqkqrv~lAral~--~~p~lLlLDEPt~~LD~~s-~~~l~~~l~~----~~~--tvi~vsHd~~~i~~~~d~v~ 611 (645)
+|+|++ .+++++. ..|.++++ |.+|... +..+.+.+.+ ++. .+.+++|+-+-+..++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 899887 4556665 67999999 8999876 5555555543 332 56667787776766666554
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.001 Score=61.55 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=21.8
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999653
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=6.8e-05 Score=81.76 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=31.0
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHH---ccCCCeEEEEecCH
Q 006442 276 QDPDLLLLDEPTNHLDL-DTIEWLEGYL---GKQDVPMVIISHDR 316 (645)
Q Consensus 276 ~~p~iLLLDEPts~LD~-~~~~~l~~~L---~~~g~tvIivsHd~ 316 (645)
.+|++|++||+..-.+. .+.+.+...+ .+.|+.||++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 48999999999887764 4556665554 45688999999973
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.30 E-value=1.1e-05 Score=90.48 Aligned_cols=60 Identities=20% Similarity=0.280 Sum_probs=49.1
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECc
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g 485 (645)
+-++++...|....++.++++++ +|+.++|+||||||||||+++|++.+.+..|.|.+.+
T Consensus 84 ~G~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 84 HGLEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp SSCHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred ccHHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 33456666665556778888888 8999999999999999999999999988888876654
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.30 E-value=8.4e-05 Score=73.63 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=30.6
Q ss_pred eeeeeEEEE---CCcEEEEECCCCccHHHHHHHHHcCCCCCccEEE
Q 006442 113 LKDVTWEVK---KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155 (645)
Q Consensus 113 L~~vsl~i~---~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~ 155 (645)
|.++||.+. +|.+++|.|++||||||+++.|+..+.+ .+.+.
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 555666665 8999999999999999999999998877 55554
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=3.2e-05 Score=75.85 Aligned_cols=34 Identities=29% Similarity=0.386 Sum_probs=27.6
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC---CCCccEEEE
Q 006442 123 GEKVGLVGVNGAGKTTQLRIIAGQE---EPDSGNVIK 156 (645)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~l~G~~---~p~~G~I~~ 156 (645)
+.+++|+|++||||||++++|++.+ .++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999865 455565543
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0012 Score=69.66 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=25.3
Q ss_pred EECCcEEEEECCCCccHHHHHHHHHcCC
Q 006442 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
+++|+++.|.|++|+|||||+..++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998887643
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0001 Score=71.33 Aligned_cols=31 Identities=23% Similarity=0.098 Sum_probs=28.0
Q ss_pred EEEecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 445 l~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
-++++|.+++|+|++|||||||.+.|.+.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3567899999999999999999999999874
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=5.8e-05 Score=71.31 Aligned_cols=38 Identities=24% Similarity=0.213 Sum_probs=30.8
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCCCee--EEEECce
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG--EVLLGEH 486 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G--~i~~~g~ 486 (645)
.+|++++|+|++||||||+.++|++.+++ .| .+.+++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECCh
Confidence 46899999999999999999999998755 45 5656554
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=9.5e-05 Score=69.79 Aligned_cols=31 Identities=35% Similarity=0.370 Sum_probs=26.8
Q ss_pred ECCcEEEEECCCCccHHHHHHHHHcCCCCCcc
Q 006442 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (645)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G 152 (645)
.+|++++|+|++||||||++++|++.+++ .|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g 33 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HG 33 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CC
Confidence 46899999999999999999999997755 45
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00011 Score=72.93 Aligned_cols=43 Identities=21% Similarity=0.348 Sum_probs=31.3
Q ss_pred eeeeeEEEe---cCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEE
Q 006442 440 FNRANLTIE---RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483 (645)
Q Consensus 440 l~~vsl~i~---~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~ 483 (645)
|.++||++. +|.+++|.|++||||||+++.|...+.+ .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 566666665 8999999999999999999999999887 555543
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00057 Score=70.38 Aligned_cols=30 Identities=30% Similarity=0.507 Sum_probs=26.1
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
.+.++..+.|.||+|||||||+++|++...
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 356678899999999999999999999763
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00068 Score=73.80 Aligned_cols=41 Identities=15% Similarity=0.196 Sum_probs=31.3
Q ss_pred cCCCeEEeeCCCCCCCH-HHHHHHHHHHHhc---CceEEEEecCH
Q 006442 560 KPSTLLVLDEPTNHLDI-PSKEMLEEAISEY---KGTVITVSHDR 600 (645)
Q Consensus 560 ~~p~lLlLDEPt~~LD~-~s~~~l~~~l~~~---~~tvi~vsHd~ 600 (645)
.++++|++||+..-.+. .+.+.+...+... +..||++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 48999999999887764 5667777777543 46888899973
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0001 Score=77.88 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=31.3
Q ss_pred ECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEE
Q 006442 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156 (645)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~ 156 (645)
+++.+++|+|++|||||||++.|+|...+..|+|.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V 107 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSV 107 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEE
Confidence 356789999999999999999999988887776654
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=4.8e-05 Score=74.58 Aligned_cols=34 Identities=29% Similarity=0.375 Sum_probs=27.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC---CCCeeEEEE
Q 006442 450 GEKTAIIGPNGCGKSTLLKLIMGLE---KPRGGEVLL 483 (645)
Q Consensus 450 Ge~v~i~G~NGsGKSTLl~~l~g~~---~p~~G~i~~ 483 (645)
+.+++|+|++||||||+.++|++.+ .++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999866 455565543
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00021 Score=69.30 Aligned_cols=29 Identities=38% Similarity=0.547 Sum_probs=24.4
Q ss_pred eeeEEEECCcEEEEECCCCccHHHHHHHHH
Q 006442 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144 (645)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~ 144 (645)
+.++.+.+| +++|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 455666665 99999999999999999885
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.13 E-value=6.3e-05 Score=79.81 Aligned_cols=52 Identities=21% Similarity=0.248 Sum_probs=38.6
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeE
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~ 480 (645)
..+.+.|++..|+.+.++++++|+| +|+|++|+|||||++.|++...+..+.
T Consensus 16 ~~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~ 67 (361)
T 2qag_A 16 GYVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV 67 (361)
T ss_dssp -----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred ceEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence 4588999999998888899999877 999999999999999999876554443
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.11 E-value=3.1e-05 Score=82.22 Aligned_cols=52 Identities=19% Similarity=0.209 Sum_probs=38.4
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccE
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~ 153 (645)
..+.+.|++..|+.+.++++++|.| +|+|++|+|||||++.|.|...+..|.
T Consensus 16 ~~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~ 67 (361)
T 2qag_A 16 GYVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV 67 (361)
T ss_dssp -----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred ceEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence 3588899999998888899999887 999999999999999999876655544
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00045 Score=64.65 Aligned_cols=27 Identities=41% Similarity=0.603 Sum_probs=23.5
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
++|.+++|+|++|+|||||++.|++..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999999864
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=9.3e-05 Score=72.02 Aligned_cols=42 Identities=24% Similarity=0.147 Sum_probs=36.2
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCee--EEEECcee
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG--EVLLGEHN 487 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G--~i~~~g~~ 487 (645)
.+++|.+++|+|++||||||+.+.|.+.+.|..| .+.+++..
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 3567899999999999999999999999887788 77777543
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00037 Score=71.51 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=26.6
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCCCCccEE
Q 006442 124 EKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154 (645)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I 154 (645)
..+.|+||+|+||||++++|++...+..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5789999999999999999999887666543
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0001 Score=77.81 Aligned_cols=37 Identities=24% Similarity=0.395 Sum_probs=31.3
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECc
Q 006442 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (645)
Q Consensus 449 ~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g 485 (645)
++.+++|+|++|||||||++.|+|.+.+.+|+|.+-+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~ 109 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLA 109 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEe
Confidence 4568999999999999999999998877777766543
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.07 E-value=4.4e-05 Score=82.56 Aligned_cols=54 Identities=20% Similarity=0.193 Sum_probs=44.4
Q ss_pred EEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEc
Q 006442 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (645)
Q Consensus 100 i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~ 157 (645)
.+++++.|++.. ++++|+ +|++++++|+|||||||++..|++.+.+..|+|.+.
T Consensus 79 ~~~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 79 YEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp HHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 345677776543 678887 899999999999999999999999998887777653
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00014 Score=69.82 Aligned_cols=54 Identities=22% Similarity=0.365 Sum_probs=37.7
Q ss_pred eeeCC-eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcC--------CCCCeeEEEECce
Q 006442 432 FGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--------EKPRGGEVLLGEH 486 (645)
Q Consensus 432 ~~y~~-~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~--------~~p~~G~i~~~g~ 486 (645)
+.|++ ..+++++++..+++ +++|+|++|+|||||++.+.+- ..+..+.+.+++.
T Consensus 7 ~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~ 69 (198)
T 1f6b_A 7 WIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM 69 (198)
T ss_dssp ------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTE
T ss_pred HHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCE
Confidence 34554 35788888887777 6899999999999999999873 2234566666654
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00049 Score=70.88 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=25.8
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHcCC
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
.+.++..+.|.||+|+|||||+++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 35678889999999999999999999875
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00056 Score=66.32 Aligned_cols=30 Identities=37% Similarity=0.581 Sum_probs=24.1
Q ss_pred eeeeEEEecCcEEEEEcCCCCcHHHHHHHHH
Q 006442 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471 (645)
Q Consensus 441 ~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~ 471 (645)
.+.++.+.+ ...+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 344566655 489999999999999999885
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.04 E-value=7.6e-05 Score=83.56 Aligned_cols=57 Identities=23% Similarity=0.249 Sum_probs=46.8
Q ss_pred EEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEc
Q 006442 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (645)
Q Consensus 100 i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~ 157 (645)
++++.+.|....++.++++++ +|+.++|+||||+|||||+++|++...+..|.|.+.
T Consensus 86 ~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~ 142 (543)
T 3m6a_A 86 LEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLG 142 (543)
T ss_dssp CHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEec
Confidence 455666665556778888888 899999999999999999999999998877777654
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00054 Score=65.12 Aligned_cols=48 Identities=25% Similarity=0.384 Sum_probs=27.6
Q ss_pred eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcC--------CCCCeeEEEECce
Q 006442 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--------EKPRGGEVLLGEH 486 (645)
Q Consensus 438 ~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~--------~~p~~G~i~~~g~ 486 (645)
.+++++++..+.. +++|+|++|+|||||++.+.+- ..+..+.+.+++.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~ 67 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNI 67 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCE
Confidence 4678888888777 7899999999999999999982 2233455666654
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.01 E-value=9.1e-05 Score=73.41 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=22.3
Q ss_pred EECCcEEEEECCCCccHHHHHHHHHc
Q 006442 120 VKKGEKVGLVGVNGAGKTTQLRIIAG 145 (645)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~l~G 145 (645)
+.+|+.++++||+||||||++.++..
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 35789999999999999998887654
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00013 Score=70.85 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=32.7
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHcCCCCCcc--EEEEc
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG--NVIKA 157 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G--~I~~~ 157 (645)
.+++|.+++|+|++||||||+.+.|++.+.|..| .+.++
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 4567899999999999999999999998877777 55443
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00068 Score=73.75 Aligned_cols=37 Identities=38% Similarity=0.601 Sum_probs=31.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC------------CCeeEEEECceec
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLEK------------PRGGEVLLGEHNV 488 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~~------------p~~G~i~~~g~~~ 488 (645)
+++|+|+||+|||||++.|+|... +..|.+.++|.++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 799999999999999999999854 6678899988754
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00015 Score=80.10 Aligned_cols=54 Identities=30% Similarity=0.406 Sum_probs=41.8
Q ss_pred EEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEc
Q 006442 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (645)
Q Consensus 100 i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~ 157 (645)
++++...|.+..+++++++.+++| +.|+||||+|||||+++|+|... .+.|.++
T Consensus 43 l~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~ 96 (499)
T 2dhr_A 43 LKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS 96 (499)
T ss_dssp HHHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred HHHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEe
Confidence 334444444455788899999999 89999999999999999999864 5555554
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00037 Score=66.19 Aligned_cols=32 Identities=31% Similarity=0.453 Sum_probs=26.5
Q ss_pred eeeEEEECCcEEEEECCCCccHHHHHHHHHcC
Q 006442 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
++|++..+|..++|+|+.||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888899999999999999999999999875
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0022 Score=69.84 Aligned_cols=129 Identities=17% Similarity=0.179 Sum_probs=77.9
Q ss_pred eeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCCCCCHHHHHHHhhHHHHH
Q 006442 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEME 191 (645)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~ 191 (645)
-|+.+.--+++|+++.|.|++|+|||||+..++.......| ..+.|++=+ ++..+-..
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g--------~~vl~~slE------~~~~~l~~-------- 246 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG--------VGVGIYSLE------MPAAQLTL-------- 246 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC--------CCEEEEESS------SCHHHHHH--------
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC--------CeEEEEECC------CCHHHHHH--------
Confidence 46665545899999999999999999999988765432222 235555433 22211110
Q ss_pred HHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHH
Q 006442 192 IAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271 (645)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLA 271 (645)
++. ....|++.... + -..||..+.+|+.-|
T Consensus 247 ------R~~------------------------------------------~~~~~i~~~~l-~-~g~l~~~~~~~~~~a 276 (444)
T 2q6t_A 247 ------RMM------------------------------------------CSEARIDMNRV-R-LGQLTDRDFSRLVDV 276 (444)
T ss_dssp ------HHH------------------------------------------HHHTTCCTTTC-C-GGGCCHHHHHHHHHH
T ss_pred ------HHH------------------------------------------HHHcCCCHHHH-h-CCCCCHHHHHHHHHH
Confidence 000 00112221111 1 146899999999988
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHH-HHHHHHccCCCeEEEEec
Q 006442 272 KILLQDPDLLLLDEPTNHLDLDTIE-WLEGYLGKQDVPMVIISH 314 (645)
Q Consensus 272 raL~~~p~iLLLDEPts~LD~~~~~-~l~~~L~~~g~tvIivsH 314 (645)
...+.+.++++.|+|. ++..... .+..+.++.+..+|+|.+
T Consensus 277 ~~~l~~~~l~i~d~~~--~s~~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 277 ASRLSEAPIYIDDTPD--LTLMEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp HHHHHTSCEEEECCTT--CBHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred HHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 8888888899988764 4444333 333444456777888765
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.89 E-value=4.6e-05 Score=78.66 Aligned_cols=58 Identities=19% Similarity=0.103 Sum_probs=44.5
Q ss_pred EeeeeeeCCeeceee-eeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceec
Q 006442 428 KNLEFGYEDRLLFNR-ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (645)
Q Consensus 428 ~~v~~~y~~~~~l~~-vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~ 488 (645)
+++...|++.. .+ ++++.+ |++++++|+||+||||++..|++.+.+..+++.+.+.+.
T Consensus 78 ~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 78 DELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp HHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred HHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 34555555432 45 677766 999999999999999999999999988888887755443
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0044 Score=64.19 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=24.7
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHc
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g 472 (645)
-+++|+++.|.|++|||||||...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999988875
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00045 Score=66.46 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q 006442 125 KVGLVGVNGAGKTTQLRIIAG 145 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G 145 (645)
+++|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0075 Score=63.62 Aligned_cols=28 Identities=29% Similarity=0.502 Sum_probs=25.0
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 447 IERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 447 i~~Ge~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
+++|+++.|.|++|||||||...++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998887543
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00032 Score=66.56 Aligned_cols=35 Identities=34% Similarity=0.403 Sum_probs=29.7
Q ss_pred EECCcEEEEECCCCccHHHHHHHHHcCCCCCccEE
Q 006442 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154 (645)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I 154 (645)
..+|.+++|+|++||||||+++.|++.+.+..|.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 45789999999999999999999999876655544
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00075 Score=64.12 Aligned_cols=35 Identities=34% Similarity=0.508 Sum_probs=21.2
Q ss_pred eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcC
Q 006442 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
.+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4788999998887 6799999999999999999983
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00069 Score=63.33 Aligned_cols=27 Identities=41% Similarity=0.613 Sum_probs=23.5
Q ss_pred ECCcEEEEECCCCccHHHHHHHHHcCC
Q 006442 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999999965
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00023 Score=68.23 Aligned_cols=42 Identities=33% Similarity=0.507 Sum_probs=31.1
Q ss_pred EEEeCCe-eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcC
Q 006442 104 SKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 104 s~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
++.|++- ++++++|+..+++ .++|+|++|+|||||++.+.+-
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4556554 5889999988887 5789999999999999999873
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0015 Score=66.09 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=23.4
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
.++.-+.|.||.|+|||||++.|+..+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 345568999999999999999999875
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0016 Score=60.23 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
+++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0039 Score=61.31 Aligned_cols=52 Identities=21% Similarity=0.164 Sum_probs=39.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecC----------HHHHHhhcCeEEEEc
Q 006442 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHD----------RAFLDQLCTKIVETE 330 (645)
Q Consensus 277 ~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd----------~~~l~~~~d~i~~l~ 330 (645)
+++++++||.-. |+.+..+.+.. |.+.+.+||++-|+ ...+..+||+|..|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l~~-L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVANI-LAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHHHH-HHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHHHH-HHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 87776665544 33459999999994 345556899999875
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00075 Score=72.09 Aligned_cols=40 Identities=23% Similarity=0.357 Sum_probs=33.0
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcC-----------CCCCeeEEEECc
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMGL-----------EKPRGGEVLLGE 485 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g~-----------~~p~~G~i~~~g 485 (645)
.+..|.+++|+|+||+|||||++.|+|. ..|..|.+.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 3457889999999999999999999998 678888887765
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00053 Score=66.22 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=26.1
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHcCCC
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
...+|.+++|+||+|||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346789999999999999999999998764
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00061 Score=65.47 Aligned_cols=21 Identities=33% Similarity=0.694 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 006442 452 KTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g 472 (645)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00083 Score=64.43 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC
Q 006442 451 EKTAIIGPNGCGKSTLLKLIMGLEKP 476 (645)
Q Consensus 451 e~v~i~G~NGsGKSTLl~~l~g~~~p 476 (645)
..+.|.||+|+|||||+++|+.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57889999999999999999886543
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00036 Score=66.22 Aligned_cols=38 Identities=29% Similarity=0.411 Sum_probs=31.2
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEE-EECc
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLGE 485 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i-~~~g 485 (645)
.+|.+++|+|++||||||+.+.|++.+.+..+.+ .+++
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 4788999999999999999999999887666654 3443
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0011 Score=62.35 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
+++|+|++|+|||||++.|++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00073 Score=72.16 Aligned_cols=40 Identities=23% Similarity=0.463 Sum_probs=31.8
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHcC-----------CCCCccEEEEcC
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQ-----------EEPDSGNVIKAK 158 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G~-----------~~p~~G~I~~~~ 158 (645)
.+..|..++|||++|+|||||+++|+|. +.|..|.|.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 3457788999999999999999999998 567777776643
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0002 Score=73.86 Aligned_cols=54 Identities=26% Similarity=0.196 Sum_probs=42.2
Q ss_pred EEeEEEEeCCeeeeee-eeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEE
Q 006442 100 LENISKSYKGVTVLKD-VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156 (645)
Q Consensus 100 i~nls~~y~~~~vL~~-vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~ 156 (645)
.+++.+.|++.. ++ ++|+++ |.+++++|+||+||||++..|++.+.+..|+|.+
T Consensus 77 ~~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l 131 (297)
T 1j8m_F 77 YDELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGL 131 (297)
T ss_dssp HHHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 445566665543 46 788766 9999999999999999999999998776666554
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0012 Score=71.71 Aligned_cols=34 Identities=32% Similarity=0.462 Sum_probs=27.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC------------CCccEEEEcC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQEE------------PDSGNVIKAK 158 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~~------------p~~G~I~~~~ 158 (645)
.++|+|+||+|||||++.|+|... +.+|.+.++|
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g 227 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG 227 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC
Confidence 799999999999999999999854 4556666654
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00076 Score=63.98 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=26.6
Q ss_pred eeeEEEecCcEEEEEcCCCCcHHHHHHHHHcC
Q 006442 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 442 ~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
++|++..+|.+++|+|+.||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46788889999999999999999999999886
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00067 Score=65.47 Aligned_cols=30 Identities=30% Similarity=0.483 Sum_probs=26.2
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
...+|..++|+||+|||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 345789999999999999999999998774
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00059 Score=70.76 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.1
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCCC
Q 006442 123 GEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (645)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~l~G~~~p 149 (645)
+..+.|.||+|+|||||+++|++....
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 356889999999999999999987643
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0038 Score=64.67 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=24.8
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHc
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAG 145 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G 145 (645)
-+++|+++.|.|++|+|||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999998875
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00012 Score=76.69 Aligned_cols=47 Identities=23% Similarity=0.249 Sum_probs=40.2
Q ss_pred EeCCeeeeeeeeEEEECCcE--EEEECCCCccHHHHHHHHHcCCCCCcc
Q 006442 106 SYKGVTVLKDVTWEVKKGEK--VGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (645)
Q Consensus 106 ~y~~~~vL~~vsl~i~~Ge~--~~lvG~NGsGKSTLl~~l~G~~~p~~G 152 (645)
.|+...+++.++..|+.|++ +.+.||+|+||||+++++++.+.+..+
T Consensus 27 ~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 27 VYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp CCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred hcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 35666788888889999998 999999999999999999998766554
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.002 Score=65.91 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=25.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCeeE
Q 006442 451 EKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480 (645)
Q Consensus 451 e~v~i~G~NGsGKSTLl~~l~g~~~p~~G~ 480 (645)
..+.|+||+|+||||+.++|++.+.+..+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~ 77 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEA 77 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcc
Confidence 468899999999999999999988665553
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.00012 Score=76.81 Aligned_cols=50 Identities=16% Similarity=0.239 Sum_probs=41.1
Q ss_pred eeeeeCCeeceeeeeEEEecCcE--EEEEcCCCCcHHHHHHHHHcCCCCCee
Q 006442 430 LEFGYEDRLLFNRANLTIERGEK--TAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (645)
Q Consensus 430 v~~~y~~~~~l~~vsl~i~~Ge~--v~i~G~NGsGKSTLl~~l~g~~~p~~G 479 (645)
++..|+...+++.++..|..|+. +.+.||+|+||||+++++++.+.+..+
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 34455666788888888999988 999999999999999999998755443
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.014 Score=61.82 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=24.6
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHcC
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
-+++|+++.|.|+.|+|||||+..++-.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 3689999999999999999999877643
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0013 Score=61.99 Aligned_cols=25 Identities=44% Similarity=0.699 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLEKP 476 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~~p 476 (645)
+++|+|++|+|||||++.+++...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 6899999999999999999997544
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0031 Score=63.79 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=23.4
Q ss_pred ECCcEEEEECCCCccHHHHHHHHHcCC
Q 006442 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
.++.-+.|.||.|+|||||+++|+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 445569999999999999999999865
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0013 Score=61.95 Aligned_cols=27 Identities=37% Similarity=0.538 Sum_probs=20.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCc
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQEEPDS 151 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~~p~~ 151 (645)
.++|+|++|+|||||++.++|...+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~~ 30 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSDL 30 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCccC
Confidence 589999999999999999999754433
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.00094 Score=63.17 Aligned_cols=37 Identities=30% Similarity=0.255 Sum_probs=28.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCC---eeEEEECce
Q 006442 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPR---GGEVLLGEH 486 (645)
Q Consensus 450 Ge~v~i~G~NGsGKSTLl~~l~g~~~p~---~G~i~~~g~ 486 (645)
-..++|+|++|||||||++.|.+.+++. -|.|..+++
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 3579999999999999999999876543 366666543
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0071 Score=62.45 Aligned_cols=56 Identities=18% Similarity=0.306 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHH--c--cCCCEEEEeCCCCCCC-H--------------HHHHH-------HHHHHccCCCeEEEEecC
Q 006442 262 SGWQMRMSLGKIL--L--QDPDLLLLDEPTNHLD-L--------------DTIEW-------LEGYLGKQDVPMVIISHD 315 (645)
Q Consensus 262 GGqkqRvaLAraL--~--~~p~iLLLDEPts~LD-~--------------~~~~~-------l~~~L~~~g~tvIivsHd 315 (645)
-++++.+.++.++ + .+|+++++|=.++-.- . ...+. |..++++.+++||++-|=
T Consensus 92 ~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV 171 (333)
T 3io5_A 92 SLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT 171 (333)
T ss_dssp BHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCe
Confidence 3566666777776 3 3699999998877642 1 01111 223456789999999997
Q ss_pred HH
Q 006442 316 RA 317 (645)
Q Consensus 316 ~~ 317 (645)
..
T Consensus 172 ~k 173 (333)
T 3io5_A 172 YE 173 (333)
T ss_dssp --
T ss_pred ee
Confidence 65
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0013 Score=61.97 Aligned_cols=26 Identities=38% Similarity=0.492 Sum_probs=22.7
Q ss_pred ECCcEEEEECCCCccHHHHHHHHHcC
Q 006442 121 KKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999999853
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0017 Score=60.99 Aligned_cols=22 Identities=27% Similarity=0.622 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
.++|+|++|+|||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0013 Score=63.19 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.5
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q 006442 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998865
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0037 Score=60.44 Aligned_cols=42 Identities=17% Similarity=0.083 Sum_probs=32.6
Q ss_pred cCCCeEEeeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHH
Q 006442 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYF 602 (645)
Q Consensus 560 ~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~--~tvi~vsHd~~~ 602 (645)
.++.+|++||.-. +|......+.+.+.+.. ..+|++|++...
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 4578999999765 88888888888887653 478888887653
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0027 Score=65.79 Aligned_cols=26 Identities=31% Similarity=0.301 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 450 GEKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 450 Ge~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
+..+.|.||+|+|||||++.|++.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 35688999999999999999998764
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0029 Score=61.25 Aligned_cols=43 Identities=21% Similarity=0.226 Sum_probs=32.7
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHH
Q 006442 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFL 319 (645)
Q Consensus 276 ~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l 319 (645)
.+|.+|++||.-. +|......|...+.+ .+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 4578999999765 788888888888864 356788888876543
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.00042 Score=72.76 Aligned_cols=37 Identities=27% Similarity=0.311 Sum_probs=33.0
Q ss_pred eeeeeeEEEECCcE--EEEECCCCccHHHHHHHHHcCCC
Q 006442 112 VLKDVTWEVKKGEK--VGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 112 vL~~vsl~i~~Ge~--~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
+++.+++.+++|++ ++|+|++||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 67778888899998 99999999999999999998653
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0019 Score=63.84 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=23.8
Q ss_pred ECCcEEEEECCCCccHHHHHHHHHcC
Q 006442 121 KKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
.+|.+++|+|++||||||+.++|++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999999999974
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.00096 Score=66.84 Aligned_cols=41 Identities=17% Similarity=0.273 Sum_probs=32.4
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceec
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~ 488 (645)
....+..+.|+|++||||||+.+.|+..+. .+.+.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 345677899999999999999999998764 24577776543
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0017 Score=62.23 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 450 GEKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 450 Ge~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998865
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0038 Score=65.59 Aligned_cols=28 Identities=32% Similarity=0.470 Sum_probs=23.8
Q ss_pred ECCcEEEEECCCCccHHHHHHHHHcCCC
Q 006442 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
..+..+.|.||.|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999997653
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.004 Score=65.41 Aligned_cols=28 Identities=21% Similarity=0.458 Sum_probs=24.0
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
..+..+.|.||.|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3466799999999999999999998663
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.00059 Score=71.63 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=32.9
Q ss_pred eceeeeeEEEecCcE--EEEEcCCCCcHHHHHHHHHcCC
Q 006442 438 LLFNRANLTIERGEK--TAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 438 ~~l~~vsl~i~~Ge~--v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 367778888889998 9999999999999999999865
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.002 Score=60.67 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=22.8
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcC
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999854
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0099 Score=64.59 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=29.0
Q ss_pred eeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 440 l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
|+.+.--+++|+.+.|.|++|+|||||...++...
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44444458999999999999999999998887654
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0016 Score=65.11 Aligned_cols=32 Identities=38% Similarity=0.553 Sum_probs=23.7
Q ss_pred eeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC
Q 006442 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
++++.+++| +.|+||+|+|||||+++|++...
T Consensus 39 ~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 39 KLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp ----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 334444555 88999999999999999998753
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0026 Score=62.85 Aligned_cols=27 Identities=37% Similarity=0.374 Sum_probs=24.0
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
.+|.+++|+|++||||||+.+.|++.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998743
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0014 Score=61.89 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=23.2
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCCC
Q 006442 124 EKVGLVGVNGAGKTTQLRIIAGQEEP 149 (645)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~l~G~~~p 149 (645)
.+++|+|++|||||||++.|.+.+++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 57999999999999999999987653
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0031 Score=58.28 Aligned_cols=23 Identities=17% Similarity=0.037 Sum_probs=20.8
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.021 Score=54.61 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=39.8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCH----------HHHHhhcCeEEEEc
Q 006442 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDR----------AFLDQLCTKIVETE 330 (645)
Q Consensus 276 ~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~----------~~l~~~~d~i~~l~ 330 (645)
.+.+++++||.-- +|++..+.+..+.. .++.||+..+|. ..+..+||.|..+.
T Consensus 80 ~~~dvViIDEaqf-l~~~~v~~l~~l~~-~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 80 EDTEVIAIDEVQF-FDDEIVEIVNKIAE-SGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TTCSEEEECSGGG-SCTHHHHHHHHHHH-TTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred ccCCEEEEECCCC-CCHHHHHHHHHHHh-CCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 3579999999644 88777666655544 489999998865 55667899998875
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0026 Score=63.65 Aligned_cols=37 Identities=35% Similarity=0.293 Sum_probs=28.7
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEc
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~ 157 (645)
..+++.++.|+|++||||||+.+.|+..+. .|.+.++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~ 64 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIID 64 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEEC
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEe
Confidence 345677899999999999999999998764 2344444
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0039 Score=58.18 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=23.2
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCC
Q 006442 123 GEKVGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999997653
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0015 Score=64.74 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=21.9
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q 006442 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
.-+++|+||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998543
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0025 Score=63.62 Aligned_cols=23 Identities=43% Similarity=0.709 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 006442 453 TAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 453 v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
+.|+||+|+|||||+++|++...
T Consensus 48 vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHcC
Confidence 88999999999999999998764
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.026 Score=55.35 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=36.9
Q ss_pred CCCeEEeeCCCCCCCHHHHHHHHHHHHhcCceEEEEecC----------HHHHHhhCCEEEEEe
Q 006442 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHD----------RYFVKQIVNRVVEVK 614 (645)
Q Consensus 561 ~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~~tvi~vsHd----------~~~i~~~~d~v~~l~ 614 (645)
+++++++||.- .|+.+..+.+.. +...+.+||++-|+ ...+..++|+|..|.
T Consensus 89 ~~dvViIDEaQ-~l~~~~ve~l~~-L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQ-FFDDRICEVANI-LAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGG-GSCTHHHHHHHH-HHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCc-cCcHHHHHHHHH-HHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 58999999995 477765555544 34457799999994 234445799998864
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0043 Score=58.38 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.2
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q 006442 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
|.+++|.|+.||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998643
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.021 Score=60.12 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 451 EKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 451 e~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
.-+.|.||.|+|||||+++|+...
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999865
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.021 Score=51.66 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=27.3
Q ss_pred CCCeEEeeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEec
Q 006442 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSH 598 (645)
Q Consensus 561 ~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~--~tvi~vsH 598 (645)
+..+|++||. ..|+...+..+.+++.... ..+|++|.
T Consensus 76 ~~g~l~ldei-~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~ 114 (145)
T 3n70_A 76 QGGTLVLSHP-EHLTREQQYHLVQLQSQEHRPFRLIGIGD 114 (145)
T ss_dssp TTSCEEEECG-GGSCHHHHHHHHHHHHSSSCSSCEEEEES
T ss_pred CCcEEEEcCh-HHCCHHHHHHHHHHHhhcCCCEEEEEECC
Confidence 4578999998 5788888888888886543 35555555
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0047 Score=57.04 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998764
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0017 Score=62.69 Aligned_cols=30 Identities=37% Similarity=0.519 Sum_probs=24.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCeeEE
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i 481 (645)
+++|+|++||||||+++.|...+.+....+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 689999999999999999998876543333
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0053 Score=57.28 Aligned_cols=27 Identities=15% Similarity=0.253 Sum_probs=23.9
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 449 RGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 449 ~Ge~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
.|..+.|+|++||||||+.+.|+..+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999998764
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.015 Score=63.11 Aligned_cols=53 Identities=15% Similarity=0.107 Sum_probs=37.6
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH-HHHHccCCCe--EEEEec
Q 006442 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWL-EGYLGKQDVP--MVIISH 314 (645)
Q Consensus 260 LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l-~~~L~~~g~t--vIivsH 314 (645)
|+..+.+|+.-|...+.+.+++|.|+| ++++...... ..+.++.+.. +|+|.+
T Consensus 263 l~~~~~~~l~~a~~~l~~~~l~i~d~~--~~s~~~i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 263 FASEDWGKLSMAIGEISNSNINIFDKA--GQSVNYIWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp TCCSCHHHHHHHHHHHHTSCEEEECCS--SCBHHHHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECCC--CCCHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 777888888888887888899999987 4666554433 3333445777 888765
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0025 Score=67.99 Aligned_cols=48 Identities=25% Similarity=0.376 Sum_probs=35.3
Q ss_pred CeeeeeeeeEEEE---CCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEc
Q 006442 109 GVTVLKDVTWEVK---KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (645)
Q Consensus 109 ~~~vL~~vsl~i~---~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~ 157 (645)
+.+++-|. +... .+..++|+|++|||||||++.|++...+..+.|.+.
T Consensus 19 g~~v~~d~-~~~~~~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 19 GGLVLVDI-WKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp SCEEEECT-TCCBTTBCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEec-ccCcCccccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 34555554 2222 466789999999999999999998877777777653
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0047 Score=56.88 Aligned_cols=19 Identities=21% Similarity=0.536 Sum_probs=18.3
Q ss_pred EEEEECCCCccHHHHHHHH
Q 006442 125 KVGLVGVNGAGKTTQLRII 143 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l 143 (645)
+++|+|+.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.01 Score=55.84 Aligned_cols=36 Identities=33% Similarity=0.622 Sum_probs=26.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc-C----CCCCee----EEEECcee
Q 006442 452 KTAIIGPNGCGKSTLLKLIMG-L----EKPRGG----EVLLGEHN 487 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g-~----~~p~~G----~i~~~g~~ 487 (645)
+++|+|+.|+|||||++.+++ . ..|+.| .+.+++..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 689999999999999976654 3 456655 45555543
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0048 Score=59.86 Aligned_cols=24 Identities=33% Similarity=0.311 Sum_probs=21.8
Q ss_pred CCcEEEEECCCCccHHHHHHHHHc
Q 006442 122 KGEKVGLVGVNGAGKTTQLRIIAG 145 (645)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~l~G 145 (645)
.+-+++|+|++||||||+++.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0017 Score=62.67 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=22.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQEEP 149 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~~p 149 (645)
+++|+|++||||||+++.|+..+.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987654
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0042 Score=58.66 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=22.9
Q ss_pred ECCcEEEEECCCCccHHHHHHHHHcC
Q 006442 121 KKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
+++.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999864
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0047 Score=61.81 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
+++|+||+|||||||.+.|++..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.022 Score=62.08 Aligned_cols=57 Identities=5% Similarity=-0.059 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHH
Q 006442 547 GEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFV 603 (645)
Q Consensus 547 Gqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~~tvi~vsHd~~~i 603 (645)
.|.+....+...+.+++++|+......-.......+.+.+++.+..+|+|.+-.+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 366667777777888888877766554344455678888888778888888876654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 645 | ||||
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 4e-36 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-32 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 4e-35 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-26 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-34 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-33 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-33 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 3e-28 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-33 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-28 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 5e-32 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-31 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 6e-32 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 9e-25 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 8e-31 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-23 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-30 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 6e-29 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-30 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 7e-30 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 4e-30 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-29 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 8e-30 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 9e-22 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 9e-30 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 7e-25 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-29 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-29 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-29 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 6e-27 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-28 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-27 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 4e-28 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 6e-24 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 8e-28 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-21 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-26 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-23 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 8e-24 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 7e-15 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-17 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 8e-07 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 0.001 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-12 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-12 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.001 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-11 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-11 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 6e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-04 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.001 |
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 134 bits (338), Expect = 4e-36
Identities = 39/233 (16%), Positives = 83/233 (35%), Gaps = 19/233 (8%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++ ENI K + L V+ V KG+ ++G NG+GK+T + +I G + D G V
Sbjct: 5 LRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFE 64
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
++ + + F+ + + + L
Sbjct: 65 NKDITNKE--------PAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLF 116
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
+ + + + K K++ L + DR S G + +G+ L+ +
Sbjct: 117 YKKWIPKEEEMV-------EKAFKILEFLKL-SHLYDRKAGELSGGQMKLVEIGRALMTN 168
Query: 278 PDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCTKIV 327
P ++++DEP + + + L + + +II H + +
Sbjct: 169 PKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLY 221
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 124 bits (312), Expect = 1e-32
Identities = 42/220 (19%), Positives = 83/220 (37%), Gaps = 32/220 (14%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ +N+ + + + ++++ +G+ T IIGPNG GKSTL+ +I G K G V
Sbjct: 3 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62
Query: 483 LGEHNVLPNYFEQN---------QAEALDLDKTVLETVAEAA------------------ 515
++ + Q + TVLE +
Sbjct: 63 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122
Query: 516 -EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
E+ ++ +L + DRK LSGG+ + + ++ ++V+DEP +
Sbjct: 123 KEEEMVEKAFKILEFLKLS-HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 181
Query: 575 DIPSKEMLEEAISEYKG---TVITVSHDRYFVKQIVNRVV 611
+ + E K T + + H V ++ +
Sbjct: 182 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLY 221
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 131 bits (330), Expect = 4e-35
Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 22/212 (10%)
Query: 425 VTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ I ++ F Y D + NL+IE+GE A +G +G GKSTL+ LI G++L
Sbjct: 17 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 76
Query: 483 LGEHNV-------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK-- 533
+ HN+ L N Q + + TV E + +++ N
Sbjct: 77 IDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDF 136
Query: 534 --------ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585
+ + LSGG+K RL+ + + +L+LDE T+ LD+ S+ +++EA
Sbjct: 137 IMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEA 196
Query: 586 ISEYKG--TVITVSHDRYFVKQIVNRVVEVKG 615
+ T + V+H + +++V ++
Sbjct: 197 LDVLSKDRTTLIVAHRLSTITH-ADKIVVIEN 227
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 106 bits (266), Expect = 2e-26
Identities = 57/248 (22%), Positives = 99/248 (39%), Gaps = 49/248 (19%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
+ ++++S Y +LKD+ ++KGE V VG++G GK+T + +I + SG +
Sbjct: 17 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 76
Query: 155 --------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
S L Q+ + S TV+E + + E V +A + A
Sbjct: 77 IDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATD-----EEVVEAAKMA 131
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
D L D +V S G +
Sbjct: 132 --------NAHDFIMNLP--------QGYDTEV--------------GERGVKLSGGQKQ 161
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCT 324
R+S+ +I L +P +L+LDE T+ LDL++ ++ L +D +I++H + +
Sbjct: 162 RLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTI-THAD 220
Query: 325 KIVETEMG 332
KIV E G
Sbjct: 221 KIVVIENG 228
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 128 bits (324), Expect = 2e-34
Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 17/205 (8%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
V ++NL + + N+ NLTI+ GE ++GP+GCGK+T L++I GLE+P G +
Sbjct: 5 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 483 LG--EHNVLPNYFEQ----NQAEALDLDKTVLETVAEAAEDWRIDD------IKGLLGRC 530
G + LP Q+ A+ TV E +A + + ++
Sbjct: 65 FGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELL 124
Query: 531 NFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI---- 586
++L+R + LSGG++ R+A + +V +L++DEP ++LD + + I
Sbjct: 125 QI-EELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQ 183
Query: 587 SEYKGTVITVSHDRYFVKQIVNRVV 611
+ K T I V+HD+ + +R+
Sbjct: 184 QKLKVTTIYVTHDQVEAMTMGDRIA 208
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 126 bits (318), Expect = 1e-33
Identities = 56/249 (22%), Positives = 101/249 (40%), Gaps = 52/249 (20%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
VKLEN++K + T + + +K GE + L+G +G GKTT LR+IAG EEP G +
Sbjct: 5 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 156 --------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ I+ + Q + V TV E AF +++ K E ++
Sbjct: 65 FGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYE--NIAFPLKIKKFPKDEIDKRVRW--- 119
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+ + + +R A S G + R
Sbjct: 120 --------AAELLQI---------------------------EELLNRYPAQLSGGQRQR 144
Query: 268 MSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323
+++ + ++ +PD+LL+DEP ++LD + ++ K V + ++HD+ +
Sbjct: 145 VAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMG 204
Query: 324 TKIVETEMG 332
+I G
Sbjct: 205 DRIAVMNRG 213
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 124 bits (313), Expect = 2e-33
Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 10/186 (5%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
S + I++L GY D+ + R +TIE+G GPNG GK+TLLK I KP GE++
Sbjct: 1 SKLEIRDLSVGY-DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
Query: 483 LG---EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLD- 538
V F + + +V + + A + + K + ++LD
Sbjct: 60 YNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL 119
Query: 539 -RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG----TV 593
+K+ LS G R+ ++ + + VLD+P +D SK + ++I E +
Sbjct: 120 KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 179
Query: 594 ITVSHD 599
I+ +
Sbjct: 180 ISSREE 185
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 110 bits (275), Expect = 3e-28
Identities = 49/234 (20%), Positives = 92/234 (39%), Gaps = 53/234 (22%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
S +++ ++S Y VL+ +T ++KG V G NG GKTT L+ I+ +P G +I
Sbjct: 1 SKLEIRDLSVGY-DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
Query: 156 -----KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDM 210
K KI FL +E V +V E+++ A + + ALE
Sbjct: 60 YNGVPITKVKGKIFFLPEEIIVPRKISV-EDYLKAVASLYGVKVNKNEIMDALE------ 112
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
++L D + + S G R+ L
Sbjct: 113 --------SVEVL----------------------------DLKKKLGELSQGTIRRVQL 136
Query: 271 GKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLD 320
LL + ++ +LD+P +D D+ ++ + L ++ + ++ + ++ D
Sbjct: 137 ASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCD 190
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 126 bits (319), Expect = 3e-33
Identities = 48/198 (24%), Positives = 89/198 (44%), Gaps = 19/198 (9%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V+ +L L NL IE+GE AI G G GK++LL LI+G + G +
Sbjct: 39 VSFSHLCLVGNPVL--KNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 96
Query: 485 --------EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM 536
++P ++N + D+ ++V +A + DI + N +
Sbjct: 97 GRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQ--QDITKFAEQDN---TV 151
Query: 537 LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TV 593
L LSGG++AR++ + + K + L +LD P +LD+ ++E + E+ T
Sbjct: 152 LGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTR 211
Query: 594 ITVSHDRYFVKQIVNRVV 611
I V+ ++ ++++
Sbjct: 212 ILVTSKMEHLR-KADKIL 228
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 113 bits (283), Expect = 2e-28
Identities = 52/265 (19%), Positives = 104/265 (39%), Gaps = 44/265 (16%)
Query: 66 VESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEK 125
+E++ + + F +QSN S + G VLK++ ++KGE
Sbjct: 5 MENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEM 64
Query: 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSA 185
+ + G G+GKT+ L +I G+ E G + K + +++F SQ + M T++E +
Sbjct: 65 LAITGSTGSGKTSLLMLILGELEASEGII---KHSGRVSFCSQFSWI-MPGTIKENII-- 118
Query: 186 FKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245
++ R + +++ D+ + + + +
Sbjct: 119 ----FGVSYDEYRYKSVVKACQLQQDITKF----------------AEQDNTVLGEGGVT 158
Query: 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWL---EGYL 302
L S G + R+SL + + +D DL LLD P +LD+ T E +
Sbjct: 159 L--------------SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCK 204
Query: 303 GKQDVPMVIISHDRAFLDQLCTKIV 327
+ ++++ L + KI+
Sbjct: 205 LMANKTRILVTSKMEHL-RKADKIL 228
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 122 bits (308), Expect = 5e-32
Identities = 50/240 (20%), Positives = 106/240 (44%), Gaps = 22/240 (9%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ + ++ K Y G VLK V+ + + G+ + ++G +G+GK+T LR I E+P G +I
Sbjct: 3 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVN 62
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL- 216
N +++ R + A K ++ + R+ + +L +
Sbjct: 63 GQN-----------INLVRDKDGQLKVADKNQLRLLRT--RLTMVFQ----HFNLWSHMT 105
Query: 217 -LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
L+ + ++ + K + ++G + S G Q R+S+ + L
Sbjct: 106 VLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALA 165
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETEMG 332
+PD+LL DEPT+ LD + + + + ++ MV+++H+ F + + ++ G
Sbjct: 166 MEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQG 225
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 120 bits (303), Expect = 2e-31
Identities = 47/220 (21%), Positives = 86/220 (39%), Gaps = 31/220 (14%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ + + +L Y + +L G+ +IIG +G GKST L+ I LEKP G ++
Sbjct: 1 NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 60
Query: 483 LGEHNVLPNYFEQN---------------------QAEALDLDKTVLETVAEAA------ 515
+ N+ + Q L TVLE V EA
Sbjct: 61 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL 120
Query: 516 -EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
+ + L + + LSGG++ R++ + + +L+ DEPT+ L
Sbjct: 121 SKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSAL 180
Query: 575 DIPSKEMLEEAISEYKG---TVITVSHDRYFVKQIVNRVV 611
D + + + T++ V+H+ F + + + V+
Sbjct: 181 DPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVI 220
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 121 bits (306), Expect = 6e-32
Identities = 38/212 (17%), Positives = 88/212 (41%), Gaps = 28/212 (13%)
Query: 424 VVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+++ ++++F Y+D + + + A GP+G GKST+ L+ +P GE+
Sbjct: 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 483 LG---------------------EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRID 521
+ + ++ +N L+ D T + +
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120
Query: 522 DIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM 581
++ + + N + + +SGG++ RLA + ++ +L+LDE T LD S+ M
Sbjct: 121 FVENMPDQLN---TEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESM 177
Query: 582 LEEAISEYKG--TVITVSHDRYFVKQIVNRVV 611
+++A+ T + ++H + +++
Sbjct: 178 VQKALDSLMKGRTTLVIAHRLSTIVD-ADKIY 208
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 101 bits (252), Expect = 9e-25
Identities = 36/241 (14%), Positives = 87/241 (36%), Gaps = 35/241 (14%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI- 155
+ ++ +Y +L+D+++E + + G +G GK+T ++ +P +G +
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
Query: 156 --KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
+ N+ + ++ +E + + + + L +D
Sbjct: 62 DGQPIDNISLENWRS--QIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
+ + D L + S G + R+++ +
Sbjct: 120 SFVENMPDQLNTEV--------------------------GERGVKISGGQRQRLAIARA 153
Query: 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEM 331
L++P +L+LDE T LD ++ ++ L + ++I+H + + KI E
Sbjct: 154 FLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTI-VDADKIYFIEK 212
Query: 332 G 332
G
Sbjct: 213 G 213
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 118 bits (298), Expect = 8e-31
Identities = 54/215 (25%), Positives = 97/215 (45%), Gaps = 32/215 (14%)
Query: 425 VTIKNLEFGYEDR---LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
V +++ F Y +R L+ T+ GE TA++GPNG GKST+ L+ L +P GG++
Sbjct: 12 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 71
Query: 482 LLGEHNV---------------------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRI 520
LL + ++N A L T+ E A A +
Sbjct: 72 LLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAH 131
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 580
I GL + +D S LSGG++ +A + +++ +L+LD+ T+ LD S+
Sbjct: 132 SFISGLPQGYD---TEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQL 188
Query: 581 MLEEAISEYKG----TVITVSHDRYFVKQIVNRVV 611
+E+ + E +V+ ++ V+Q + ++
Sbjct: 189 QVEQLLYESPERYSRSVLLITQHLSLVEQ-ADHIL 222
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 97.7 bits (243), Expect = 2e-23
Identities = 46/252 (18%), Positives = 101/252 (40%), Gaps = 53/252 (21%)
Query: 98 VKLENISKSY---KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
V+ +++S +Y V VL+ +T+ ++ GE LVG NG+GK+T ++ +P G +
Sbjct: 12 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 71
Query: 155 I----------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204
+ + ++A + QE +V R+++E ++ + K+
Sbjct: 72 LLDGKPLPQYEHRYLHRQVAAVGQEPQV-FGRSLQENIAYGLTQKPTMEEITAAAVKSGA 130
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
+ L +D + D + S G
Sbjct: 131 -----HSFISGLPQGYD-----------------------------TEVDEAGSQLSGGQ 156
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLD 320
+ ++L + L++ P +L+LD+ T+ LD ++ +E L + +++I+ + +
Sbjct: 157 RQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLV- 215
Query: 321 QLCTKIVETEMG 332
+ I+ E G
Sbjct: 216 EQADHILFLEGG 227
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 118 bits (296), Expect = 1e-30
Identities = 55/241 (22%), Positives = 108/241 (44%), Gaps = 30/241 (12%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+GV+L ++ K + VT +++++ EVK GE + L+G +G GKTT LR+IAG EEP G +
Sbjct: 2 AGVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI- 60
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
+ ++ ++ ++ + + K + +S +
Sbjct: 61 ---------------------YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVY 99
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
+ K + V +D +V ++ LG + +R S G + R++LG+ ++
Sbjct: 100 ---DNIAFPLKLRKVPRQEIDQRVREVAELLGL-TELLNRKPRELSGGQRQRVALGRAIV 155
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETEM 331
+ P + L+DEP ++LD + L K V + ++HD+ + +I
Sbjct: 156 RKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNR 215
Query: 332 G 332
G
Sbjct: 216 G 216
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 113 bits (284), Expect = 6e-29
Identities = 47/211 (22%), Positives = 100/211 (47%), Gaps = 23/211 (10%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ V + ++ + + +L ++ GE ++GP+GCGK+T L++I GLE+P G++
Sbjct: 2 AGVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61
Query: 483 LGEHNVL------------PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD------IK 524
+G+ V + Q+ AL TV + +A + ++ ++
Sbjct: 62 IGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVR 121
Query: 525 GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEE 584
+ ++L+RK LSGG++ R+A + +V+ + ++DEP ++LD + +
Sbjct: 122 EVAELLGL-TELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRA 180
Query: 585 AISE----YKGTVITVSHDRYFVKQIVNRVV 611
+ + T I V+HD+ + +R+
Sbjct: 181 ELKKLQRQLGVTTIYVTHDQVEAMTMGDRIA 211
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 117 bits (293), Expect = 3e-30
Identities = 53/242 (21%), Positives = 100/242 (41%), Gaps = 52/242 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
V ++++ K +LK +++E+++GE GL+G NGAGKTT LRII+ +P SG V
Sbjct: 3 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF 62
Query: 156 -------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
+ I++L +E + E +AG +E V+
Sbjct: 63 GKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYL-------RFVAGFYASSSSEIEEMVE 115
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
R + L + V+++S G ++
Sbjct: 116 ------RATEIAGL---------------------------GEKIKDRVSTYSKGMVRKL 142
Query: 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCTK 325
+ + L+ +P L +LDEPT+ LD+ + ++ + +++ SH+ ++ LC +
Sbjct: 143 LIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDR 202
Query: 326 IV 327
I
Sbjct: 203 IA 204
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 115 bits (290), Expect = 7e-30
Identities = 45/203 (22%), Positives = 85/203 (41%), Gaps = 17/203 (8%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V +K+L + + + IE GE +IGPNG GK+T L++I L KP G V +
Sbjct: 3 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF 62
Query: 485 EHNVLPNYFEQN-------QAEALDLDKTVLETVAEAAEDWRIDD------IKGLLGRCN 531
NV+ E + + +E + A + ++
Sbjct: 63 GKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAG 122
Query: 532 FKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK- 590
+ + +VS S G +L + ++ L +LDEPT+ LD+ + + + + +
Sbjct: 123 L-GEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ 181
Query: 591 --GTVITVSHDRYFVKQIVNRVV 611
T++ SH+ V+ + +R+
Sbjct: 182 EGLTILVSSHNMLEVEFLCDRIA 204
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 116 bits (292), Expect = 4e-30
Identities = 45/243 (18%), Positives = 90/243 (37%), Gaps = 54/243 (22%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK-- 156
+++++ Y + +K + +V +G+ V L+G NGAGKTT L IAG G +I
Sbjct: 8 EVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNG 67
Query: 157 ---------AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ M IA + + + TV E M E +++ LE
Sbjct: 68 QDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMG----AYNRKDKEGIKRDLE--- 120
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+ F L+ + +L + S G Q
Sbjct: 121 -------WIFSLFPRLKERL--------------------------KQLGGTLSGGEQQM 147
Query: 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCT 324
+++G+ L+ P LL++DEP+ L + + + ++ ++++ + ++
Sbjct: 148 LAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAH 207
Query: 325 KIV 327
Sbjct: 208 YGY 210
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 114 bits (287), Expect = 2e-29
Identities = 42/208 (20%), Positives = 82/208 (39%), Gaps = 23/208 (11%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
V+ +++L Y +L + RG+ +IG NG GK+T L I GL + + G+++
Sbjct: 6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65
Query: 484 GEHNVLPNYFEQ---------NQAEALDLDKTVLETVA--------EAAEDWRIDDIKGL 526
++ + + + TV E + + ++ I L
Sbjct: 66 NGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSL 125
Query: 527 LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI 586
R + L + LSGGE+ LA + ++ LL++DEP+ L + E I
Sbjct: 126 FPR---LKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVI 182
Query: 587 SEYKG---TVITVSHDRYFVKQIVNRVV 611
+ T++ V + ++ +
Sbjct: 183 QKINQEGTTILLVEQNALGALKVAHYGY 210
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 115 bits (290), Expect = 8e-30
Identities = 48/209 (22%), Positives = 96/209 (45%), Gaps = 24/209 (11%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+T +N+ F Y + ++ + NL+I++GE I+G +G GKSTL KLI P G+VL
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 483 LGEHNVL-----------------PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKG 525
+ H++ ++ + + L + +V + ++
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGM-SVEKVIYAAKLAGAHD 120
Query: 526 LLGRCNFKADML-DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEE 584
+ + + + + LSGG++ R+A + +V +L+ DE T+ LD S+ ++
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 585 AISEYKG--TVITVSHDRYFVKQIVNRVV 611
+ + TVI ++H VK +R++
Sbjct: 181 NMHKICKGRTVIIIAHRLSTVKN-ADRII 208
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 92.7 bits (230), Expect = 9e-22
Identities = 45/249 (18%), Positives = 97/249 (38%), Gaps = 51/249 (20%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ NI YK +L ++ +K+GE +G+VG +G+GK+T ++I P++G V+
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 156 ----------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
++ + Q+ ++R++ + A K+ K
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNV-LLNRSIIDNISLA--NPGMSVEKVIYAAKLAG- 117
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
A D + + + A S G +
Sbjct: 118 AHDFISELREGYNTIV--------------------------------GEQGAGLSGGQR 145
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLC 323
R+++ + L+ +P +L+ DE T+ LD ++ + + K + ++II+H + + +
Sbjct: 146 QRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTV-KNA 204
Query: 324 TKIVETEMG 332
+I+ E G
Sbjct: 205 DRIIVMEKG 213
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 116 bits (291), Expect = 9e-30
Identities = 51/211 (24%), Positives = 91/211 (43%), Gaps = 27/211 (12%)
Query: 425 VTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ +N+ F Y R NL I G+ A++G +G GKST+ LI G +L
Sbjct: 14 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 73
Query: 483 LGEHNV--------------------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD 522
+ H++ L N N ++ E + EAA D
Sbjct: 74 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMD 133
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML 582
+ N ++ LLSGG++ R+A + +++ S +L+LDE T+ LD S+ +
Sbjct: 134 FINKMD--NGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 191
Query: 583 EEAISEYKG--TVITVSHDRYFVKQIVNRVV 611
+ A+ E + T + ++H ++Q + +V
Sbjct: 192 QAALDELQKNRTSLVIAHRLSTIEQ-ADEIV 221
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 101 bits (254), Expect = 7e-25
Identities = 48/249 (19%), Positives = 105/249 (42%), Gaps = 50/249 (20%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++ N++ +Y G V L+++ ++ G+ V LVG +G+GK+T +I + D G+++
Sbjct: 14 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 73
Query: 156 ----------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
A ++A +SQ + + +E E++++A
Sbjct: 74 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSR-----EQIEEAARM 128
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
A +D + + + LD + S G +
Sbjct: 129 A--------YAMDFINKMD--------NGLDTII--------------GENGVLLSGGQR 158
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLC 323
R+++ + LL+D +L+LDE T+ LD ++ ++ L + ++ ++I+H + + +
Sbjct: 159 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTI-EQA 217
Query: 324 TKIVETEMG 332
+IV E G
Sbjct: 218 DEIVVVEDG 226
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 114 bits (288), Expect = 1e-29
Identities = 55/219 (25%), Positives = 91/219 (41%), Gaps = 30/219 (13%)
Query: 425 VTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
+ +KN+ Y+ A NL I+ GE +I+GP+G GKST+L +I L+KP GE
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 481 VLLGEHNV-------LPNYFEQN-----QAEALDLDKTVLETVAEAAE---------DWR 519
V + L Q L T LE V + R
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK 579
L + + K + LSGG++ R+A + + +++ D+PT LD +
Sbjct: 122 RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTG 181
Query: 580 ----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVK 614
++L++ E TV+ V+HD + R++ +K
Sbjct: 182 EKIMQLLKKLNEEDGKTVVVVTHDINVAR-FGERIIYLK 219
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 114 bits (286), Expect = 2e-29
Identities = 52/257 (20%), Positives = 101/257 (39%), Gaps = 59/257 (22%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+KL+N++K+YK + LK+V +K+GE V ++G +G+GK+T L II ++P G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 154 V--------------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERV 199
V + KI F+ Q+F + T E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVE---------------- 105
Query: 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259
L+ + A++ + + + + +
Sbjct: 106 --------------------LPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQ 145
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHD 315
S G Q R+++ + L +P ++L D+PT LD T ++ L+ + +V+++HD
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205
Query: 316 RAFLDQLCTKIVETEMG 332
+ +I+ + G
Sbjct: 206 INVA-RFGERIIYLKDG 221
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 115 bits (289), Expect = 1e-29
Identities = 51/212 (24%), Positives = 87/212 (41%), Gaps = 26/212 (12%)
Query: 425 VTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
+ + N+ + +A +L + G+ +IG +G GKSTL++ + LE+P G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 481 VLLGEHNVLP-----------NYFEQNQAEALDLDKTVLETVAEAAE------DWRIDDI 523
VL+ + Q L +TV VA E D +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 524 KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583
LL D D S LSGG+K R+A + + +L+ DE T+ LD + +
Sbjct: 122 TELLSLVGL-GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180
Query: 584 EAISE----YKGTVITVSHDRYFVKQIVNRVV 611
E + + T++ ++H+ VK+I + V
Sbjct: 181 ELLKDINRRLGLTILLITHEMDVVKRICDCVA 212
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 107 bits (269), Expect = 6e-27
Identities = 56/258 (21%), Positives = 103/258 (39%), Gaps = 65/258 (25%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+KL NI+K + + L +V+ V G+ G++G +GAGK+T +R + E P G+
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 154 VI-------------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG--KLER 198
V+ K+ +I + Q F + SRTV +E+ K E
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVA----LPLELDNTPKDEV 117
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
++ E LL L D D +
Sbjct: 118 KRRVTE-----------LLSLVGL---------------------------GDKHDSYPS 139
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQ-DVPMVIISH 314
+ S G + R+++ + L +P +LL DE T+ LD +I L + ++ + +++I+H
Sbjct: 140 NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITH 199
Query: 315 DRAFLDQLCTKIVETEMG 332
+ + ++C + G
Sbjct: 200 EMDVVKRICDCVAVISNG 217
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 111 bits (278), Expect = 2e-28
Identities = 55/203 (27%), Positives = 98/203 (48%), Gaps = 17/203 (8%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V ++N+ + + ++ NL I GE +GP+GCGKSTLL++I GLE G++ +G
Sbjct: 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 60
Query: 485 EHNVL------PNYFEQNQAEALDLDKTVLETVAEAAE------DWRIDDIKGLLGRCNF 532
E + Q+ AL +V E ++ + + + +
Sbjct: 61 EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQL 120
Query: 533 KADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE---- 588
A +LDRK LSGG++ R+A + +V ++ +LDEP ++LD + + IS
Sbjct: 121 -AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR 179
Query: 589 YKGTVITVSHDRYFVKQIVNRVV 611
T+I V+HD+ + +++V
Sbjct: 180 LGRTMIYVTHDQVEAMTLADKIV 202
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 108 bits (272), Expect = 2e-27
Identities = 57/247 (23%), Positives = 101/247 (40%), Gaps = 52/247 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
V+L+N++K++ V V KD+ ++ +GE V VG +G GK+T LR+IAG E SG++
Sbjct: 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 60
Query: 156 ------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
+ + + Q + + +V E K + A K Q+ +
Sbjct: 61 EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLK--LAGAKKEVINQRVNQ----- 113
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+ + L A DR + S G + R++
Sbjct: 114 ------VAEVLQL---------------------------AHLLDRKPKALSGGQRQRVA 140
Query: 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY----LGKQDVPMVIISHDRAFLDQLCTK 325
+G+ L+ +P + LLDEP ++LD + + M+ ++HD+ L K
Sbjct: 141 IGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADK 200
Query: 326 IVETEMG 332
IV + G
Sbjct: 201 IVVLDAG 207
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 110 bits (277), Expect = 4e-28
Identities = 43/205 (20%), Positives = 80/205 (39%), Gaps = 21/205 (10%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
V+ ++++ + + GE ++GPNG GKSTLL + G+ +G
Sbjct: 3 VMQLQDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFA 58
Query: 484 GE-------HNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM 536
G+ + + +Q + V + D ++ + D
Sbjct: 59 GQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK 118
Query: 537 LDRKVSLLSGGEKARLAFCKFMVKPST-------LLVLDEPTNHLDIPSKEMLEEAISEY 589
L R + LSGGE R+ +++ + LL+LDEP N LD+ + L++ +S
Sbjct: 119 LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 590 KG---TVITVSHDRYFVKQIVNRVV 611
++ SHD + +R
Sbjct: 179 CQQGLAIVMSSHDLNHTLRHAHRAW 203
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 98.5 bits (245), Expect = 6e-24
Identities = 56/250 (22%), Positives = 89/250 (35%), Gaps = 70/250 (28%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
++L+++++S T L ++ EV+ GE + LVG NGAGK+T L +AG G++
Sbjct: 4 MQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFA 58
Query: 156 --------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
K + A+LSQ+ + V + E +
Sbjct: 59 GQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLT----LHQHDKTRTELLNDVAG--- 111
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
A+ LD D R S G R
Sbjct: 112 ---------------------ALALD-----------------DKLGRSTNQLSGGEWQR 133
Query: 268 MSLGKILLQ-------DPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRA 317
+ L ++LQ LLLLDEP N LD+ L+ L +Q + +V+ SHD
Sbjct: 134 VRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN 193
Query: 318 FLDQLCTKIV 327
+ +
Sbjct: 194 HTLRHAHRAW 203
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 109 bits (274), Expect = 8e-28
Identities = 56/204 (27%), Positives = 97/204 (47%), Gaps = 15/204 (7%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ I++L +++ L + +L +E GE I+GP G GK+ L+LI G P G +LL
Sbjct: 1 MIEIESLSRKWKNFSL-DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILL 59
Query: 484 GEHNVLPNYFEQ------NQAEALDLDKTVLETVAEAAEDWRIDD---IKGLLGRCNFKA 534
+V E+ Q +L V + + +I D + +
Sbjct: 60 DGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIE- 118
Query: 535 DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE----YK 590
+LDR LSGGE+ R+A + +V +L+LDEP + LD ++E E +S K
Sbjct: 119 HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNK 178
Query: 591 GTVITVSHDRYFVKQIVNRVVEVK 614
TV+ ++HD+ + + +R+ V
Sbjct: 179 LTVLHITHDQTEARIMADRIAVVM 202
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 92.0 bits (228), Expect = 1e-21
Identities = 57/247 (23%), Positives = 99/247 (40%), Gaps = 56/247 (22%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+++E++S+ +K L +++ +V+ GE ++G GAGKT L +IAG PDSG ++
Sbjct: 2 IEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLD 60
Query: 156 ------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
+ IAF+ Q + + V++ F M+ +RV D
Sbjct: 61 GKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK--NLEFGMRMKKIKDPKRVLDTAR----D 114
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+ + L DR + S G Q R++
Sbjct: 115 LKIEHLL-------------------------------------DRNPLTLSGGEQQRVA 137
Query: 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325
L + L+ +P +LLLDEP + LD T E L + ++ I+HD+ + +
Sbjct: 138 LARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADR 197
Query: 326 IVETEMG 332
I G
Sbjct: 198 IAVVMDG 204
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 105 bits (264), Expect = 2e-26
Identities = 54/215 (25%), Positives = 96/215 (44%), Gaps = 24/215 (11%)
Query: 423 SVVTIKNL--EFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
+ +KN+ F + + N+ IE GE+ I+GP+G GK+T +++I GL+ P GE
Sbjct: 2 VRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 481 VLLGEHNVLPNYFEQ-----------NQAEALDLDKTVLETVAEAAE------DWRIDDI 523
+ + V N Q AL + T E +A + +
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 524 KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583
+ + + +L+ LSG ++ R+A + +VK +LL+LDEP ++LD ++
Sbjct: 122 EEVAKILDIH-HVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSAR 180
Query: 584 EAISE----YKGTVITVSHDRYFVKQIVNRVVEVK 614
+ E T++ VSHD + I +RV +
Sbjct: 181 ALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLV 215
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 97.5 bits (242), Expect = 2e-23
Identities = 57/257 (22%), Positives = 104/257 (40%), Gaps = 61/257 (23%)
Query: 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+ ++N+SK +K V L +V ++ GE+ G++G +GAGKTT +RIIAG + P +G
Sbjct: 2 VRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 154 V-------------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK-EEMEIAGKLERV 199
+ I + KI + Q + + + T E +M +RV
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259
++ + +D+ L +
Sbjct: 122 EEVAK----ILDIHHVL-------------------------------------NHFPRE 140
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315
S Q R++L + L++DP LLLLDEP ++LD + + + V ++++SHD
Sbjct: 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD 200
Query: 316 RAFLDQLCTKIVETEMG 332
A + + ++ G
Sbjct: 201 PADIFAIADRVGVLVKG 217
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 98.5 bits (245), Expect = 8e-24
Identities = 56/196 (28%), Positives = 89/196 (45%), Gaps = 14/196 (7%)
Query: 430 LEFGYEDRLLFNRANLTIE-RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
L+ E RL R N+ E + ++GP G GKS L+LI G+ KP GEV L ++
Sbjct: 3 LKVRAEKRLGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI 62
Query: 489 LP------NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGL---LGRCNFKADMLDR 539
P Q AL +V +A + + + A +LDR
Sbjct: 63 TPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDR 122
Query: 540 KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE----YKGTVIT 595
K + LSGGE+ R+A + +V LL+LDEP + +D+ +K +L E + + ++
Sbjct: 123 KPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH 182
Query: 596 VSHDRYFVKQIVNRVV 611
V+HD + + V
Sbjct: 183 VTHDLIEAAMLADEVA 198
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 72.4 bits (177), Expect = 7e-15
Identities = 52/243 (21%), Positives = 88/243 (36%), Gaps = 57/243 (23%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI------ 155
K + +V +E+ + L+G GAGK+ L +IAG +PD G V
Sbjct: 6 RAEKRLGNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI 62
Query: 156 --KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
I F+ Q++ + +V + +E + RV++ E + L+
Sbjct: 63 TPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLR-NVERVERDRRVREMAE-KLGIAHLL 120
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
DR A S G + R++L +
Sbjct: 121 ----------------------------------------DRKPARLSGGERQRVALARA 140
Query: 274 LLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVET 329
L+ P LLLLDEP + +D +E L + DVP++ ++HD L ++
Sbjct: 141 LVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVM 200
Query: 330 EMG 332
G
Sbjct: 201 LNG 203
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 78.9 bits (193), Expect = 1e-17
Identities = 22/166 (13%), Positives = 49/166 (29%), Gaps = 15/166 (9%)
Query: 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETV 511
K I G G GK+TL+K I+ R E +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRT------------GFRI 49
Query: 512 AEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571
+I K + + ++ + A+ + ++++DE
Sbjct: 50 ITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIG 109
Query: 572 NHLDI--PSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKG 615
++++ + + + V+ R V +V + + G
Sbjct: 110 KMELFSKKFRDLVRQIMHDPNVNVVATIPIR-DVHPLVKEIRRLPG 154
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 47.3 bits (111), Expect = 8e-07
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
K+ + G G GKTT ++ I + +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFW 32
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 38.0 bits (87), Expect = 0.001
Identities = 7/81 (8%), Positives = 22/81 (27%), Gaps = 3/81 (3%)
Query: 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDL--DTIEWLEGYLGKQDVPMVI 311
+ + + + + ++++DE + + + +V +V
Sbjct: 76 NVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVA 135
Query: 312 ISHDRAFLDQLCTKIVETEMG 332
R L +I
Sbjct: 136 TIPIRDVH-PLVKEIRRLPGA 155
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.3 bits (90), Expect = 0.001
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 552 LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGT---VITVSHDRYF 602
L F +PS VLDE LDI + + + I ++ I +S
Sbjct: 345 LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTM 398
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 645 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.84 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.82 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.65 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.62 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.61 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.6 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.04 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.99 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.81 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.72 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.67 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.61 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.1 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.94 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.74 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.52 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.22 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.21 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.95 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.94 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.93 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.85 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.81 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.8 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.79 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.78 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.72 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.71 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.67 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.62 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.62 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.61 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.58 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.56 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.55 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.53 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.47 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.43 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.39 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.37 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.37 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.36 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.34 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.28 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.25 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.24 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.24 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.23 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.22 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.21 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.2 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.19 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.16 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.16 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.15 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.09 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.08 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.08 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.03 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.96 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.94 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.92 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.91 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.91 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.89 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 95.87 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.8 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.8 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.73 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.71 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.68 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.68 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.67 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.67 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.66 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.66 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.66 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.65 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.64 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.64 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.62 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.6 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.6 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.57 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.57 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.53 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.52 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.5 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.48 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.48 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.46 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.46 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.46 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.44 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.44 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.43 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.43 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.41 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.41 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.4 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.38 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.38 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.37 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.34 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.26 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.24 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.23 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.23 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.23 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.17 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.17 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.17 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.15 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.13 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.12 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.1 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.1 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.09 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.06 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.06 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.05 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.04 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.03 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.96 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.96 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.95 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 94.94 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.93 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.9 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 94.89 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.89 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.8 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.77 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.77 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 94.77 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.75 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.72 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.68 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 94.68 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.63 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 94.62 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.58 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.55 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 94.54 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.54 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.54 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.53 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 94.51 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 94.51 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.51 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 94.49 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.49 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.46 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.46 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.45 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.45 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.43 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 94.41 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.4 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.39 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.36 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.35 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 94.33 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.32 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.32 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.27 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.26 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.23 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.22 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.19 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 94.18 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.17 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.17 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 94.17 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.15 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.12 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.12 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 94.11 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.05 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.04 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.03 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.03 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.02 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.01 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.95 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.94 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.92 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.92 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.91 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 93.9 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.9 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.89 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 93.89 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.88 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.86 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 93.85 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.84 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.8 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.76 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.74 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 93.74 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 93.74 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.74 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.73 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.71 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.7 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.7 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 93.69 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 93.68 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.67 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.62 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.6 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 93.6 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 93.6 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.59 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 93.59 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.59 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.59 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 93.54 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.52 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.5 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.49 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 93.48 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 93.48 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 93.48 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 93.47 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 93.46 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.43 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 93.42 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.38 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.36 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.35 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 93.35 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.33 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.31 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 93.3 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.3 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.28 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.27 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 93.26 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 93.26 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.24 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 93.24 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.23 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 93.23 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.18 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.16 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.15 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.14 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 93.14 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.11 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.11 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.09 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.07 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.07 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.05 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.03 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.02 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.0 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 92.97 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.93 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 92.93 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.92 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 92.92 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 92.92 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 92.91 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 92.91 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 92.86 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.84 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.81 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 92.8 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.79 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.78 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.72 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 92.72 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.68 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.68 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.68 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 92.65 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.63 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.62 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 92.62 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 92.59 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.57 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 92.56 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.54 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.54 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.53 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.46 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 92.45 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 92.42 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 92.39 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 92.39 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.38 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 92.37 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 92.36 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.35 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 92.34 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 92.34 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.34 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 92.3 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 92.29 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 92.25 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 92.24 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 92.21 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 92.15 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 92.15 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 92.13 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 92.09 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.04 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 91.99 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 91.99 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 91.98 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 91.94 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 91.93 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 91.9 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 91.89 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 91.88 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.85 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 91.83 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 91.83 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 91.82 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.81 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 91.78 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 91.78 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 91.75 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 91.72 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 91.71 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 91.66 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 91.66 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 91.65 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.62 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 91.6 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 91.49 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 91.4 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.4 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 91.35 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.33 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.32 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 91.31 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 91.3 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.29 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 91.23 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 91.21 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 91.18 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.13 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 91.11 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 91.11 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.07 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 91.04 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 91.03 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 90.84 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 90.83 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 90.82 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 90.8 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 90.78 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 90.66 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 90.58 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 90.49 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 90.37 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 90.31 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 90.29 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 90.22 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 90.2 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 90.1 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 89.93 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 89.91 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 89.88 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 89.86 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 89.81 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 89.81 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 89.71 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 89.51 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 89.5 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 89.47 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 89.42 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 89.17 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 89.17 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 89.12 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 89.12 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 89.08 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 89.05 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 89.01 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.88 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 88.8 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 88.65 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 88.58 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 88.56 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 88.53 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 88.32 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 88.1 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 87.64 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 87.6 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 87.3 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 87.06 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 86.8 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 86.77 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 86.24 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 86.14 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 85.89 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 85.81 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 85.76 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 85.75 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 85.6 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 85.46 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 85.44 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 85.43 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 85.38 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 85.18 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 85.12 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 85.12 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 85.12 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 84.83 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 84.82 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 84.77 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 84.48 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 84.24 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 84.05 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 83.96 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 83.14 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 83.01 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 82.83 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 82.81 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 82.76 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 82.4 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 82.33 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 81.58 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 81.21 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 80.83 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 80.6 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 80.41 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 80.19 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=3.3e-52 Score=414.10 Aligned_cols=210 Identities=28% Similarity=0.411 Sum_probs=180.5
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc--------eEEEEe
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLS 167 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~--------~i~~v~ 167 (645)
..|+++|++|+|++..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +|||||
T Consensus 5 ~~I~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~ 84 (239)
T d1v43a3 5 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 84 (239)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred CeEEEEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEe
Confidence 359999999999999999999999999999999999999999999999999999999999987532 499999
Q ss_pred ccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcC
Q 006442 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (645)
Q Consensus 168 Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg 247 (645)
|++.+++.+||+||+...... ..++..+.++++.++++.+|
T Consensus 85 Q~~~l~~~ltv~enl~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~~~ 125 (239)
T d1v43a3 85 QSYAVWPHMTVYENIAFPLKI---------------------------------------KKFPKDEIDKRVRWAAELLQ 125 (239)
T ss_dssp C------CCCHHHHHHTTCC-----------------------------------------CCCHHHHHHHHHHHHHHTT
T ss_pred echhhcccchHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHHcC
Confidence 999999999999998632210 12344456778889999999
Q ss_pred CCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhc
Q 006442 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLC 323 (645)
Q Consensus 248 l~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~ 323 (645)
+. +..++++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++++ +.|+|||+||||++++.++|
T Consensus 126 l~-~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~ 204 (239)
T d1v43a3 126 IE-ELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMG 204 (239)
T ss_dssp CG-GGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHC
T ss_pred Ch-hhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhC
Confidence 96 68999999999999999999999999999999999999999999999888764 35999999999999999999
Q ss_pred CeEEEEcCceeEEeccChHHHHH
Q 006442 324 TKIVETEMGVSRTYEGNYSQYVL 346 (645)
Q Consensus 324 d~i~~l~~G~~~~~~g~~~~~~~ 346 (645)
|||++|++|++ ...|+.++.+.
T Consensus 205 dri~vm~~G~i-v~~G~~~el~~ 226 (239)
T d1v43a3 205 DRIAVMNRGQL-LQIGSPTEVYL 226 (239)
T ss_dssp SEEEEEETTEE-EEEECHHHHHH
T ss_pred CEEEEEECCEE-EEEcCHHHHHh
Confidence 99999999998 56787766543
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.8e-52 Score=413.25 Aligned_cols=208 Identities=26% Similarity=0.411 Sum_probs=152.1
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------ceEEEEecc
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------~~i~~v~Q~ 169 (645)
|+++||+|+|++..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .+||||||+
T Consensus 1 Iev~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~ 80 (232)
T d2awna2 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQS 80 (232)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSS
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeeccc
Confidence 689999999999999999999999999999999999999999999999999999999998753 259999999
Q ss_pred CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCC
Q 006442 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (645)
Q Consensus 170 ~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (645)
+.+++.+||+||+...... ...+..+.++++.++++.+++.
T Consensus 81 ~~l~~~~tv~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~~l~~~~l~ 121 (232)
T d2awna2 81 YALYPHLSVAENMSFGLKL---------------------------------------AGAKKEVINQRVNQVAEVLQLA 121 (232)
T ss_dssp CCC------------------------------------------------------------CHHHHHHHHHHHHC---
T ss_pred cccccchhHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHhCCCh
Confidence 9999999999998633110 0123345667888999999997
Q ss_pred cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcCe
Q 006442 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTK 325 (645)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d~ 325 (645)
+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+ +.|+|||+||||++++..+|||
T Consensus 122 -~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dr 200 (232)
T d2awna2 122 -HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADK 200 (232)
T ss_dssp -------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSE
T ss_pred -hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 68899999999999999999999999999999999999999999998887663 4699999999999999999999
Q ss_pred EEEEcCceeEEeccChHHHHH
Q 006442 326 IVETEMGVSRTYEGNYSQYVL 346 (645)
Q Consensus 326 i~~l~~G~~~~~~g~~~~~~~ 346 (645)
|++|++|++ ...|+..+.+.
T Consensus 201 i~vm~~G~i-v~~G~~~el~~ 220 (232)
T d2awna2 201 IVVLDAGRV-AQVGKPLELYH 220 (232)
T ss_dssp EEEEETTEE-EEEECHHHHHH
T ss_pred EEEEECCEE-EEEeCHHHHHh
Confidence 999999998 56677666543
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=8.4e-52 Score=411.89 Aligned_cols=209 Identities=29% Similarity=0.446 Sum_probs=185.1
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------------c
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------M 161 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------------~ 161 (645)
+.|+++|++|+|++.++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.. .
T Consensus 2 ~~i~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r 81 (240)
T d1g2912 2 AGVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81 (240)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred CcEEEEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccc
Confidence 35999999999999999999999999999999999999999999999999999999999998742 2
Q ss_pred eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHh
Q 006442 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (645)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (645)
+||||+|++.+++.+||+||+..... ....+..+.++++.+
T Consensus 82 ~ig~v~Q~~~L~~~ltV~eni~~~~~---------------------------------------~~~~~~~e~~~~v~~ 122 (240)
T d1g2912 82 DIAMVFQSYALYPHMTVYDNIAFPLK---------------------------------------LRKVPRQEIDQRVRE 122 (240)
T ss_dssp SEEEECSCCCCCTTSCHHHHHHHHHH---------------------------------------HTTCCHHHHHHHHHH
T ss_pred cceecccchhhcchhhhhHhhhhhHH---------------------------------------HcCCCHHHHHHHHHH
Confidence 59999999999999999999863211 112344566788999
Q ss_pred hchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHH
Q 006442 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (645)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~ 317 (645)
+++.+|+. +..++++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+ +.|.|||+||||++
T Consensus 123 ~l~~~~l~-~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~ 201 (240)
T d1g2912 123 VAELLGLT-ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV 201 (240)
T ss_dssp HHHHHTCG-GGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred HHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH
Confidence 99999996 68899999999999999999999999999999999999999999999988764 35999999999999
Q ss_pred HHHhhcCeEEEEcCceeEEeccChHHHH
Q 006442 318 FLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 318 ~l~~~~d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
++..+||||++|++|++ ...|+..+.+
T Consensus 202 ~~~~~~drv~vm~~G~i-v~~G~~~el~ 228 (240)
T d1g2912 202 EAMTMGDRIAVMNRGVL-QQVGSPDEVY 228 (240)
T ss_dssp HHHHHCSEEEEEETTEE-EEEECHHHHH
T ss_pred HHHHhCCEEEEEECCEE-EEEcCHHHHH
Confidence 99999999999999998 4557765543
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=2.7e-51 Score=407.77 Aligned_cols=208 Identities=25% Similarity=0.395 Sum_probs=183.6
Q ss_pred cEEEEeEEEEe--CCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-------------c
Q 006442 97 GVKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------M 161 (645)
Q Consensus 97 ~i~i~nls~~y--~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-------------~ 161 (645)
.|+++|++|+| +...+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhc
Confidence 49999999999 45679999999999999999999999999999999999999999999998742 2
Q ss_pred eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHh
Q 006442 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (645)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (645)
+||||||++.+++.+||+||+...... ..++..+.++++.+
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~---------------------------------------~~~~~~~~~~~v~~ 123 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTN---------------------------------------MKMSKEEIRKRVEE 123 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTT---------------------------------------SSCCHHHHHHHHHH
T ss_pred cceEEeccccccccccHHHHhhhhhHh---------------------------------------hcCCHHHHHHHHHH
Confidence 599999999999999999999643210 12344456788899
Q ss_pred hchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHH
Q 006442 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (645)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~ 317 (645)
+++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++++ +.|+|||+||||++
T Consensus 124 ~l~~~gL~-~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~ 202 (242)
T d1oxxk2 124 VAKILDIH-HVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA 202 (242)
T ss_dssp HHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred HHhhcChH-hhhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHH
Confidence 99999996 78999999999999999999999999999999999999999999999988763 35999999999999
Q ss_pred HHHhhcCeEEEEcCceeEEeccChHHHH
Q 006442 318 FLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 318 ~l~~~~d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
++.++||||++|++|++ ...|+..+.+
T Consensus 203 ~~~~~~dri~vm~~G~i-v~~g~~~el~ 229 (242)
T d1oxxk2 203 DIFAIADRVGVLVKGKL-VQVGKPEDLY 229 (242)
T ss_dssp HHHHHCSEEEEEETTEE-EEEECHHHHH
T ss_pred HHHHhCCEEEEEECCEE-EEEcCHHHHH
Confidence 99999999999999998 4667765544
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=9.6e-51 Score=401.05 Aligned_cols=204 Identities=27% Similarity=0.402 Sum_probs=178.7
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc--------eEEEEec
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQ 168 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~--------~i~~v~Q 168 (645)
+|+++|++|+|++ .+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +||||+|
T Consensus 1 mi~v~nlsk~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q 79 (229)
T d3d31a2 1 MIEIESLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (229)
T ss_dssp CEEEEEEEEECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred CEEEEEEEEEeCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeecc
Confidence 4899999999986 589999999999999999999999999999999999999999999987542 5999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCC
Q 006442 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (645)
Q Consensus 169 ~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (645)
++.+++.+||+||+...... ... ...+++.++++.+|+
T Consensus 80 ~~~l~~~~tV~enl~~~~~~---------------------------------------~~~---~~~~~~~~~l~~~~l 117 (229)
T d3d31a2 80 NYSLFPHMNVKKNLEFGMRM---------------------------------------KKI---KDPKRVLDTARDLKI 117 (229)
T ss_dssp TCCCCTTSCHHHHHHHHHHH---------------------------------------HCC---CCHHHHHHHHHHTTC
T ss_pred ccccCccccHHHHHHHHHhh---------------------------------------ccc---cHHHHHHHHHHHhcc
Confidence 99999999999998632210 001 113467778888999
Q ss_pred CcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcC
Q 006442 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCT 324 (645)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d 324 (645)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++++ +.|.|||+||||++++.++||
T Consensus 118 ~-~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~d 196 (229)
T d3d31a2 118 E-HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMAD 196 (229)
T ss_dssp T-TTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCS
T ss_pred h-hhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCC
Confidence 6 68899999999999999999999999999999999999999999999888763 469999999999999999999
Q ss_pred eEEEEcCceeEEeccChHHHH
Q 006442 325 KIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 325 ~i~~l~~G~~~~~~g~~~~~~ 345 (645)
||++|++|++ ...|+.++.+
T Consensus 197 rv~vm~~G~i-v~~g~~~el~ 216 (229)
T d3d31a2 197 RIAVVMDGKL-IQVGKPEEIF 216 (229)
T ss_dssp EEEEESSSCE-EEEECHHHHH
T ss_pred EEEEEECCEE-EEEcCHHHHH
Confidence 9999999998 5678766654
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1e-50 Score=401.97 Aligned_cols=202 Identities=26% Similarity=0.368 Sum_probs=173.8
Q ss_pred cEEEEeEEEEeCC--e--eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc-----------
Q 006442 97 GVKLENISKSYKG--V--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------- 161 (645)
Q Consensus 97 ~i~i~nls~~y~~--~--~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~----------- 161 (645)
+|+++|++|+|+. . .+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchh
Confidence 4899999999953 2 489999999999999999999999999999999999999999999987532
Q ss_pred ---eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHH
Q 006442 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (645)
Q Consensus 162 ---~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (645)
+||||+|++.+++.+||+||+...... .. ....+..+..++
T Consensus 81 r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~---------------~~---------------------~~~~~~~~~~~~ 124 (230)
T d1l2ta_ 81 RRDKIGFVFQQFNLIPLLTALENVELPLIF---------------KY---------------------RGAMSGEERRKR 124 (230)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHT---------------CC---------------------SSCCCHHHHHHH
T ss_pred hcceEEEEecchhhCcCccHHHHHhHHHHH---------------hc---------------------cCCCCHHHHHHH
Confidence 499999999999999999998632110 00 001223344567
Q ss_pred HHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEec
Q 006442 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISH 314 (645)
Q Consensus 239 i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsH 314 (645)
+.++|+.+|+.....++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+ +.|+|||+|||
T Consensus 125 ~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTH 204 (230)
T d1l2ta_ 125 ALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204 (230)
T ss_dssp HHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred HHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECC
Confidence 78889999998667899999999999999999999999999999999999999999999988764 46999999999
Q ss_pred CHHHHHhhcCeEEEEcCceeE
Q 006442 315 DRAFLDQLCTKIVETEMGVSR 335 (645)
Q Consensus 315 d~~~l~~~~d~i~~l~~G~~~ 335 (645)
|++++ ++||||++|++|++.
T Consensus 205 d~~~a-~~~drv~~m~~G~Iv 224 (230)
T d1l2ta_ 205 DINVA-RFGERIIYLKDGEVE 224 (230)
T ss_dssp CHHHH-TTSSEEEEEETTEEE
T ss_pred CHHHH-HhCCEEEEEECCEEE
Confidence 99987 699999999999973
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.9e-51 Score=405.76 Aligned_cols=206 Identities=26% Similarity=0.442 Sum_probs=181.6
Q ss_pred cEEEEeEEEEeCCe----eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc-----------
Q 006442 97 GVKLENISKSYKGV----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------- 161 (645)
Q Consensus 97 ~i~i~nls~~y~~~----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~----------- 161 (645)
+|+++|++|+|+.. .+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhh
Confidence 48999999999643 589999999999999999999999999999999999999999999987532
Q ss_pred --eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHH
Q 006442 162 --KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (645)
Q Consensus 162 --~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (645)
+||||||++.+++.+||+||+..... ...++..+.++++
T Consensus 81 rr~ig~VfQ~~~l~~~~tv~eni~~~l~---------------------------------------~~~~~~~~~~~~v 121 (240)
T d3dhwc1 81 RRQIGMIFQHFNLLSSRTVFGNVALPLE---------------------------------------LDNTPKDEVKRRV 121 (240)
T ss_dssp HHHEEECCSSCCCCTTSBHHHHHHHHHH---------------------------------------TTTCCTTHHHHHH
T ss_pred hccccccccccccCCCccHHHHHHHHHH---------------------------------------HcCCCHHHHHHHH
Confidence 49999999999899999999863211 1124455667889
Q ss_pred HhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecC
Q 006442 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHD 315 (645)
Q Consensus 240 ~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd 315 (645)
.++|+.+|+. +..++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+ +.|+|||+||||
T Consensus 122 ~~~L~~vgL~-~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd 200 (240)
T d3dhwc1 122 TELLSLVGLG-DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHE 200 (240)
T ss_dssp HHHHHHHSTT-TTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSC
T ss_pred HHHHHHcCCc-hhhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCC
Confidence 9999999997 67899999999999999999999999999999999999999999999988764 359999999999
Q ss_pred HHHHHhhcCeEEEEcCceeEEeccChHH
Q 006442 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 316 ~~~l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
++++..+||||++|++|++ ...|+.++
T Consensus 201 l~~~~~~~dri~vl~~G~i-v~~G~~~e 227 (240)
T d3dhwc1 201 MDVVKRICDCVAVISNGEL-IEQDTVSE 227 (240)
T ss_dssp HHHHHHHCSEEEEEETTEE-EEEEETTT
T ss_pred HHHHHHhCCEEEEEECCEE-EEECCHHH
Confidence 9999999999999999998 45565544
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1e-49 Score=402.83 Aligned_cols=211 Identities=26% Similarity=0.432 Sum_probs=184.9
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc---------------
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------------- 161 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~--------------- 161 (645)
.|+++|++|+|++..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 2 ~Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~ 81 (258)
T d1b0ua_ 2 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 81 (258)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCH
T ss_pred eEEEEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccH
Confidence 38999999999999999999999999999999999999999999999999999999999987542
Q ss_pred --------eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChh
Q 006442 162 --------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD 233 (645)
Q Consensus 162 --------~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (645)
+||||||++.+++.+||.||+...... ....+..
T Consensus 82 ~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~--------------------------------------~~~~~~~ 123 (258)
T d1b0ua_ 82 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ--------------------------------------VLGLSKH 123 (258)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHH--------------------------------------TTCCCHH
T ss_pred hHHHHHhcceEEEEechhhccchhcchhhhhhHHH--------------------------------------hcCCCHH
Confidence 499999999998999999998632110 0112334
Q ss_pred cHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEE
Q 006442 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMV 310 (645)
Q Consensus 234 ~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvI 310 (645)
+..+++.++++.+|+.+...++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+ +.|+|||
T Consensus 124 ~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til 203 (258)
T d1b0ua_ 124 DARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMV 203 (258)
T ss_dssp HHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceE
Confidence 4567788899999998666788899999999999999999999999999999999999999999888764 4689999
Q ss_pred EEecCHHHHHhhcCeEEEEcCceeEEeccChHHHHH
Q 006442 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (645)
Q Consensus 311 ivsHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~~~ 346 (645)
+||||++++..+||||++|++|++ ...|+.++.+.
T Consensus 204 ~vtHdl~~~~~~adri~vm~~G~i-v~~g~~~ev~~ 238 (258)
T d1b0ua_ 204 VVTHEMGFARHVSSHVIFLHQGKI-EEEGDPEQVFG 238 (258)
T ss_dssp EECSCHHHHHHHCSEEEEEETTEE-EEEECHHHHHH
T ss_pred EEeCCHHHHHHhCCEEEEEECCEE-EEEcCHHHHHh
Confidence 999999999999999999999998 46788766544
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.4e-49 Score=395.04 Aligned_cols=203 Identities=29% Similarity=0.439 Sum_probs=178.2
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cchhccc
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQN 496 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~q~ 496 (645)
|+++||+++|+++.+|++|||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. .+|++|+
T Consensus 7 I~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~ 86 (239)
T d1v43a3 7 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQS 86 (239)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC-
T ss_pred EEEEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEeec
Confidence 89999999999999999999999999999999999999999999999999999999999999873 3567765
Q ss_pred hhhcCCCCCCHHHHHHhhhcc--cc----HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCC
Q 006442 497 QAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (645)
Q Consensus 497 ~~~~l~~~~tv~e~v~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP 570 (645)
+.+++.+||.||+.+.... +. .+.+.++|+.+++ .+..++++.+|||||||||+|||||+.+|+|||||||
T Consensus 87 --~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEP 163 (239)
T d1v43a3 87 --YAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQI-EELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEP 163 (239)
T ss_dssp -------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTC-GGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEEST
T ss_pred --hhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-hhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCC
Confidence 4678899999999876432 12 3457789999999 5788999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHH
Q 006442 571 TNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSL 631 (645)
Q Consensus 571 t~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~ 631 (645)
|++||+.++..+.+.|++. +.|||+||||++++.++||||++|++|+|++ .|+.+++++.
T Consensus 164 ts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~-~G~~~el~~~ 227 (239)
T d1v43a3 164 LSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQ-IGSPTEVYLR 227 (239)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHHHC
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHHhC
Confidence 9999999999999988764 6699999999999999999999999999996 5787777643
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=3.4e-49 Score=393.02 Aligned_cols=203 Identities=25% Similarity=0.400 Sum_probs=181.2
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------------
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------------- 489 (645)
.|+++||++.|+++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 3 ~i~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ 82 (240)
T d1g2912 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred cEEEEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhccccccc
Confidence 489999999999999999999999999999999999999999999999999999999999998752
Q ss_pred cchhccchhhcCCCCCCHHHHHHhhhcc------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCC
Q 006442 490 PNYFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (645)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~v~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 563 (645)
.+|++|+ +.+++.+||.||+.+.... ...+++.++|+.+++ .+..++++++|||||||||+|||||+.+|+
T Consensus 83 ig~v~Q~--~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l-~~~~~~~p~~LSGGqkQRv~IAraL~~~P~ 159 (240)
T d1g2912 83 IAMVFQS--YALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGL-TELLNRKPRELSGGQRQRVALGRAIVRKPQ 159 (240)
T ss_dssp EEEECSC--CCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTC-GGGTTCCGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred ceecccc--hhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCC-hhHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 2455665 4688899999999876432 123458899999999 578899999999999999999999999999
Q ss_pred eEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 564 LLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 564 lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
||||||||++||+.++..+.+.|.++ +.|||+||||++++..+||||++|++|+|++. |..++++.
T Consensus 160 iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~-G~~~el~~ 229 (240)
T d1g2912 160 VFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQV-GSPDEVYD 229 (240)
T ss_dssp EEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECHHHHHH
T ss_pred EEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE-cCHHHHHh
Confidence 99999999999999999999988653 67999999999999999999999999999964 77777654
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.8e-50 Score=395.70 Aligned_cols=202 Identities=27% Similarity=0.438 Sum_probs=148.5
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cchhccc
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQN 496 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~q~ 496 (645)
|+++||+++|+++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+|++|+
T Consensus 1 Iev~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~ 80 (232)
T d2awna2 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQS 80 (232)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSS
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeeccc
Confidence 68999999999999999999999999999999999999999999999999999999999998762 3566765
Q ss_pred hhhcCCCCCCHHHHHHhhhcc------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCC
Q 006442 497 QAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (645)
Q Consensus 497 ~~~~l~~~~tv~e~v~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP 570 (645)
+.+++.+||+||+.+.... ...+++.++|+.+++. +..++++.+|||||||||+|||||+.+|++||||||
T Consensus 81 --~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEP 157 (232)
T d2awna2 81 --YALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEP 157 (232)
T ss_dssp --CCC---------------------CHHHHHHHHHHHHC----------------------CHHHHHHTCCSEEEEEST
T ss_pred --cccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 4688899999999876431 1234688999999995 788999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHh----cCceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 571 TNHLDIPSKEMLEEAISE----YKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 571 t~~LD~~s~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|++||+.++..+.+.|.+ .+.|||+||||++++..+||||++|++|+++. .|+.+++++
T Consensus 158 ts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~-~G~~~el~~ 220 (232)
T d2awna2 158 LSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ-VGKPLELYH 220 (232)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EeCHHHHHh
Confidence 999999999999888764 46799999999999999999999999999996 577777654
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=3.5e-49 Score=389.83 Aligned_cols=202 Identities=27% Similarity=0.430 Sum_probs=181.2
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cchhcc
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~q 495 (645)
+|+++||+++|++ .+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|
T Consensus 1 mi~v~nlsk~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q 79 (229)
T d3d31a2 1 MIEIESLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (229)
T ss_dssp CEEEEEEEEECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred CEEEEEEEEEeCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeecc
Confidence 5899999999986 4899999999999999999999999999999999999999999999999873 356666
Q ss_pred chhhcCCCCCCHHHHHHhhhc---cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCC
Q 006442 496 NQAEALDLDKTVLETVAEAAE---DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572 (645)
Q Consensus 496 ~~~~~l~~~~tv~e~v~~~~~---~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~ 572 (645)
+ ..+++.+||.||+.+... ....+++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 80 ~--~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts 156 (229)
T d3d31a2 80 N--YSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIE-HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLS 156 (229)
T ss_dssp T--CCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCT-TTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSST
T ss_pred c--cccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcch-hhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCc
Confidence 5 468889999999987643 23456789999999994 78899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 573 HLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 573 ~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
+||+.++..+.+.|++. +.|||+||||++++.++||||++|++|+++. .|+.+++++
T Consensus 157 ~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~-~g~~~el~~ 217 (229)
T d3d31a2 157 ALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQ-VGKPEEIFE 217 (229)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEE-EECHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHHh
Confidence 99999999999988653 5699999999999999999999999999995 578777654
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=9.2e-49 Score=389.51 Aligned_cols=204 Identities=26% Similarity=0.397 Sum_probs=180.6
Q ss_pred EEEEEeeeeee--CCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc------------
Q 006442 424 VVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------ 489 (645)
Q Consensus 424 ~i~~~~v~~~y--~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------ 489 (645)
.|+++||++.| ++..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhc
Confidence 38999999999 4567899999999999999999999999999999999999999999999998752
Q ss_pred -cchhccchhhcCCCCCCHHHHHHhhhcc--c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCC
Q 006442 490 -PNYFEQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS 562 (645)
Q Consensus 490 -~~~~~q~~~~~l~~~~tv~e~v~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p 562 (645)
.+|++|+ +.+++.+||+||+.++... . ..+++.++|+.+|+ .+..++++++|||||||||+|||||+.+|
T Consensus 83 ~ig~vfQ~--~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL-~~~~~~~p~~LSGGqkQRvaiARaL~~~P 159 (242)
T d1oxxk2 83 KIGMVFQT--WALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDI-HHVLNHFPRELSGAQQQRVALARALVKDP 159 (242)
T ss_dssp CEEEEETT--SCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTC-GGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred cceEEecc--ccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcCh-HhhhhCChhhCCHHHHhHHHHHhHHhhcc
Confidence 3456665 4688899999999987532 1 23458899999999 57889999999999999999999999999
Q ss_pred CeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHH
Q 006442 563 TLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSL 631 (645)
Q Consensus 563 ~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~ 631 (645)
++|||||||++||+.++..+.+.|++. +.|||+||||++++.++||||++|++|+|++ .|+.+++++.
T Consensus 160 ~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~-~g~~~el~~~ 231 (242)
T d1oxxk2 160 SLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQ-VGKPEDLYDN 231 (242)
T ss_dssp SEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHHHS
T ss_pred cceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-EcCHHHHHhC
Confidence 999999999999999999999988654 6699999999999999999999999999996 5777776653
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=7.7e-49 Score=392.85 Aligned_cols=209 Identities=21% Similarity=0.327 Sum_probs=174.8
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc-----------eE
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KI 163 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~-----------~i 163 (645)
+.+|+++|++|+|++..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. .|
T Consensus 4 d~~Lev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi 83 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred ceEEEEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcc
Confidence 3479999999999999999999999999999999999999999999999999999999999987532 49
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhc
Q 006442 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (645)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (645)
+|+||++.+++.+||+||+....... .......+.+++++
T Consensus 84 ~~~~q~~~l~~~ltv~en~~~~~~~~----------------------------------------~~~~~~~~~~~~~~ 123 (240)
T d1ji0a_ 84 ALVPEGRRIFPELTVYENLMMGAYNR----------------------------------------KDKEGIKRDLEWIF 123 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTC----------------------------------------CCSSHHHHHHHHHH
T ss_pred cccCcccccCCcccHHHHHHHHHHhc----------------------------------------CCHHHHHHHHHHHH
Confidence 99999999989999999986322100 01111122222333
Q ss_pred hhc-CCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHH
Q 006442 244 PEL-GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (645)
Q Consensus 244 ~~l-gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l 319 (645)
..+ ++ .+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++++ +.|+|||++|||++++
T Consensus 124 ~~~~~l-~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~ 202 (240)
T d1ji0a_ 124 SLFPRL-KERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGA 202 (240)
T ss_dssp HHCHHH-HTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHH
T ss_pred HHhhCh-HHHHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 322 22 256788899999999999999999999999999999999999999999988764 5699999999999999
Q ss_pred HhhcCeEEEEcCceeEEeccChHHHH
Q 006442 320 DQLCTKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 320 ~~~~d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
.++||||++|++|++ .+.|+.++..
T Consensus 203 ~~~~drv~vl~~G~i-v~~g~~~el~ 227 (240)
T d1ji0a_ 203 LKVAHYGYVLETGQI-VLEGKASELL 227 (240)
T ss_dssp HHHCSEEEEEETTEE-EEEEEHHHHH
T ss_pred HHhCCEEEEEECCEE-EEEcCHHHHh
Confidence 999999999999998 5678776654
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.4e-48 Score=388.49 Aligned_cols=208 Identities=26% Similarity=0.388 Sum_probs=181.9
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC---------ceEEEEe
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLS 167 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~---------~~i~~v~ 167 (645)
+|+++|++|+|+++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+ ..++|||
T Consensus 2 aI~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vp 81 (238)
T d1vpla_ 2 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLP 81 (238)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEEC
T ss_pred CEEEEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEee
Confidence 4899999999999999999999999999999999999999999999999999999999998753 3599999
Q ss_pred ccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcC
Q 006442 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (645)
Q Consensus 168 Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg 247 (645)
|++.+++++|+.||+..... + ......+..+.++++++.++
T Consensus 82 q~~~~~~~ltv~e~l~~~~~---------------~------------------------~~~~~~~~~~~~~~~l~~~~ 122 (238)
T d1vpla_ 82 EEAGAYRNMQGIEYLRFVAG---------------F------------------------YASSSSEIEEMVERATEIAG 122 (238)
T ss_dssp TTCCCCTTSBHHHHHHHHHH---------------H------------------------HCCCHHHHHHHHHHHHHHHC
T ss_pred eccccCCCccHHHHHHHHHH---------------h------------------------cCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999852110 0 01223344566777888888
Q ss_pred CCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcC
Q 006442 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCT 324 (645)
Q Consensus 248 l~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d 324 (645)
+. +..++++.+||||||||++|||||+++|++|||||||+|||+.++..+.++++ +.|+|||++|||++++..+||
T Consensus 123 l~-~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~d 201 (238)
T d1vpla_ 123 LG-EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCD 201 (238)
T ss_dssp CG-GGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCS
T ss_pred CH-HHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 85 67788999999999999999999999999999999999999999999988774 469999999999999999999
Q ss_pred eEEEEcCceeEEeccChHHHH
Q 006442 325 KIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 325 ~i~~l~~G~~~~~~g~~~~~~ 345 (645)
||++|++|++ .+.|+.++..
T Consensus 202 rv~vl~~G~i-v~~g~~~el~ 221 (238)
T d1vpla_ 202 RIALIHNGTI-VETGTVEELK 221 (238)
T ss_dssp EEEEEETTEE-EEEEEHHHHH
T ss_pred EEEEEECCEE-EEEcCHHHHH
Confidence 9999999998 4668766543
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.8e-48 Score=385.69 Aligned_cols=195 Identities=27% Similarity=0.396 Sum_probs=171.3
Q ss_pred EEEEEeeeeeeCC----eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------
Q 006442 424 VVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~----~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (645)
+|+++||++.|+. ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchh
Confidence 5899999999963 24799999999999999999999999999999999999999999999998863
Q ss_pred ----cchhccchhhcCCCCCCHHHHHHhhhc-----cc----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHH
Q 006442 490 ----PNYFEQNQAEALDLDKTVLETVAEAAE-----DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK 556 (645)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~v~~~~~-----~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAr 556 (645)
.+|++|+ +.+.+.+||+||+.++.. .. ..+++.+.|+.+++.....+++|.+|||||||||+|||
T Consensus 81 r~~~ig~v~Q~--~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAr 158 (230)
T d1l2ta_ 81 RRDKIGFVFQQ--FNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIAR 158 (230)
T ss_dssp HHHHEEEECTT--CCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred hcceEEEEecc--hhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHh
Confidence 2456665 467889999999987532 11 13457789999999755679999999999999999999
Q ss_pred HHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEee
Q 006442 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDY 621 (645)
Q Consensus 557 al~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~ 621 (645)
||+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++ ++||||++|++|+|+..
T Consensus 159 aL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~drv~~m~~G~Iv~~ 226 (230)
T d1l2ta_ 159 ALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVERE 226 (230)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH-TTSSEEEEEETTEEEEE
T ss_pred hhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHH-HhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999988754 56999999999987 69999999999999864
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=5.9e-49 Score=397.47 Aligned_cols=222 Identities=21% Similarity=0.258 Sum_probs=183.4
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc-----------eEE
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KIA 164 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~-----------~i~ 164 (645)
++|+++|++++|++.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. .|+
T Consensus 3 ~iL~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~ 82 (254)
T d1g6ha_ 3 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 82 (254)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred ceEEEEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCC
Confidence 479999999999999999999999999999999999999999999999999999999999987542 499
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
|+||++.+++.+||+||+..+.... . ... . ..+.............+++.++++
T Consensus 83 ~v~Q~~~~~~~ltv~enl~~~~~~~---------------~---~~~-~-------~~~~~~~~~~~~~~~~~~~~~~l~ 136 (254)
T d1g6ha_ 83 RTFQTPQPLKEMTVLENLLIGEICP---------------G---ESP-L-------NSLFYKKWIPKEEEMVEKAFKILE 136 (254)
T ss_dssp ECCCCCGGGGGSBHHHHHHGGGTST---------------T---SCH-H-------HHHHHCSSCCCCHHHHHHHHHHHH
T ss_pred ccCCccccCCCCeeeeeeeehhhhc---------------c---ccc-h-------hhhhhhcccccHHHHHHHHHHHHH
Confidence 9999999989999999996431000 0 000 0 000000001122344567778889
Q ss_pred hcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHHHHHh
Q 006442 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L---~~~g~tvIivsHd~~~l~~ 321 (645)
.+++. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+++ ++.|+|||+||||++++.+
T Consensus 137 ~~~l~-~~~~~~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~ 215 (254)
T d1g6ha_ 137 FLKLS-HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLN 215 (254)
T ss_dssp HTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGG
T ss_pred hcCcc-hhccCchhhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHH
Confidence 99986 5789999999999999999999999999999999999999999999998776 4579999999999999999
Q ss_pred hcCeEEEEcCceeEEeccChHHHH
Q 006442 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 322 ~~d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
+||||++|++|++ ...|+.++..
T Consensus 216 ~~Drv~vm~~G~i-v~~g~~~e~~ 238 (254)
T d1g6ha_ 216 YIDHLYVMFNGQI-IAEGRGEEEI 238 (254)
T ss_dssp GCSEEEEEETTEE-EEEEESHHHH
T ss_pred hCCEEEEEeCCEE-EEEecHHHHh
Confidence 9999999999998 4567665543
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.3e-48 Score=386.97 Aligned_cols=202 Identities=26% Similarity=0.359 Sum_probs=178.2
Q ss_pred EEEEEeeeeeeCCe----eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------
Q 006442 424 VVTIKNLEFGYEDR----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~~----~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (645)
+|+++||++.|+.. .+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhh
Confidence 58999999999643 5899999999999999999999999999999999999999999999999862
Q ss_pred ---cchhccchhhcCCCCCCHHHHHHhhhcc--c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHcc
Q 006442 490 ---PNYFEQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560 (645)
Q Consensus 490 ---~~~~~q~~~~~l~~~~tv~e~v~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~ 560 (645)
.++++|+ +.+.+.+||+||+.+.... + ..+++.++|+.+|+. +..++++++|||||||||+|||||+.
T Consensus 81 rr~ig~VfQ~--~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~-~~~~~~~~~LSGG~~QRvaiAraL~~ 157 (240)
T d3dhwc1 81 RRQIGMIFQH--FNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG-DKHDSYPSNLSGGQKQRVAIARALAS 157 (240)
T ss_dssp HHHEEECCSS--CCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTT-TTTSSCBSCCCHHHHHHHHHHHHHHT
T ss_pred hccccccccc--cccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHhhhhcc
Confidence 3566665 4678899999999876421 1 235688999999995 77899999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 561 ~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
+|+||||||||++||+.++..+.+.|++. +.|||+||||++++..+||||++|++|+|++ .|+.++++
T Consensus 158 ~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~-~G~~~ei~ 229 (240)
T d3dhwc1 158 NPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE-QDTVSEVF 229 (240)
T ss_dssp CCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEE-EEETTTTT
T ss_pred CCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 99999999999999999999999988754 6799999999999999999999999999996 46666543
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=9.1e-48 Score=388.47 Aligned_cols=204 Identities=25% Similarity=0.368 Sum_probs=179.9
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------------
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------------- 489 (645)
.|+++||+++|++..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 ~Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~ 81 (258)
T d1b0ua_ 2 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 81 (258)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCH
T ss_pred eEEEEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccH
Confidence 389999999999999999999999999999999999999999999999999999999999998862
Q ss_pred ---------cchhccchhhcCCCCCCHHHHHHhhhc---cc----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHH
Q 006442 490 ---------PNYFEQNQAEALDLDKTVLETVAEAAE---DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLA 553 (645)
Q Consensus 490 ---------~~~~~q~~~~~l~~~~tv~e~v~~~~~---~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~ 553 (645)
.++++|+ +.+++.+||.+|+.++.. .+ ..+.+.++|+.+++.....++.+++|||||||||+
T Consensus 82 ~~~~~~r~~ig~vfQ~--~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~ 159 (258)
T d1b0ua_ 82 NQLRLLRTRLTMVFQH--FNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVS 159 (258)
T ss_dssp HHHHHHHHHEEEECSS--CCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHH
T ss_pred hHHHHHhcceEEEEec--hhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHH
Confidence 2344554 467888999999987521 11 23457889999999765668889999999999999
Q ss_pred HHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 554 FCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 554 lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|||||+.+|+||||||||+|||+.++..+.+.|++. +.|||+||||++++..+||||++|++|+|++ .|+.+++++
T Consensus 160 iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~-~g~~~ev~~ 238 (258)
T d1b0ua_ 160 IARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE-EGDPEQVFG 238 (258)
T ss_dssp HHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHHHH
T ss_pred HHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHHh
Confidence 999999999999999999999999999999988754 4699999999999999999999999999996 577777654
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=8.6e-48 Score=385.20 Aligned_cols=208 Identities=20% Similarity=0.288 Sum_probs=178.3
Q ss_pred CCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc---------c
Q 006442 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP---------N 491 (645)
Q Consensus 421 ~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~---------~ 491 (645)
++.+|+++||+++|+++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. +
T Consensus 3 sd~~Lev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 3 SDIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp CSEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred cceEEEEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhc
Confidence 3578999999999999999999999999999999999999999999999999999999999999998731 2
Q ss_pred hhccchhhcCCCCCCHHHHHHhhhccc-----cHHHHHHHHhhc-CCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeE
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAAEDW-----RIDDIKGLLGRC-NFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~~~~-----~~~~~~~~L~~~-~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 565 (645)
...+.+...+++.+||++|+......+ ....+...+..+ ++ .+..++++++|||||||||+|||||+.+|++|
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lL 161 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRL-KERLKQLGGTLSGGEQQMLAIGRALMSRPKLL 161 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHH-HTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEE
T ss_pred ccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCh-HHHHhCchhhCCHHHHHHHHHHHHHHhCCCEe
Confidence 223344556788899999998764321 122344555555 44 46778999999999999999999999999999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 566 VLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 566 lLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
||||||+|||+.++..+.+.|++. +.|||+||||++++.++||||++|++|+++. .|+.+++.+
T Consensus 162 llDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~-~g~~~el~~ 228 (240)
T d1ji0a_ 162 MMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVL-EGKASELLD 228 (240)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEE-EEEHHHHHT
T ss_pred eecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHhc
Confidence 999999999999999999998764 4699999999999999999999999999985 588887754
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.9e-47 Score=385.00 Aligned_cols=207 Identities=20% Similarity=0.273 Sum_probs=179.9
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc-----------c
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP-----------N 491 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~-----------~ 491 (645)
.+|+++||+++|++..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. +
T Consensus 3 ~iL~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~ 82 (254)
T d1g6ha_ 3 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 82 (254)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred ceEEEEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCC
Confidence 37999999999999999999999999999999999999999999999999999999999999998731 3
Q ss_pred hhccchhhcCCCCCCHHHHHHhhhcc-------------------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHH
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAAED-------------------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARL 552 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~~~-------------------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv 552 (645)
+++|+ ..+++.+||.||+..+... ...+++.++++.+++. +..++++.+|||||||||
T Consensus 83 ~v~Q~--~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~Qrv 159 (254)
T d1g6ha_ 83 RTFQT--PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS-HLYDRKAGELSGGQMKLV 159 (254)
T ss_dssp ECCCC--CGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHH
T ss_pred ccCCc--cccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcc-hhccCchhhCCcHHHHHH
Confidence 44554 3567789999999864210 1124577889999984 678999999999999999
Q ss_pred HHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 553 AFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 553 ~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
+|||||+.+|++|||||||+|||+.++..+.+.|++. +.|||+||||++++.++||||++|++|+++. .|..++..
T Consensus 160 ~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~-~g~~~e~~ 238 (254)
T d1g6ha_ 160 EIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA-EGRGEEEI 238 (254)
T ss_dssp HHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE-EEESHHHH
T ss_pred HHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEE-EecHHHHh
Confidence 9999999999999999999999999999999988754 5699999999999999999999999999996 47777665
Q ss_pred HHHh
Q 006442 630 SLWF 633 (645)
Q Consensus 630 ~~~~ 633 (645)
+...
T Consensus 239 ~~~~ 242 (254)
T d1g6ha_ 239 KNVL 242 (254)
T ss_dssp HHHH
T ss_pred hccc
Confidence 5443
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=4.4e-47 Score=376.47 Aligned_cols=201 Identities=28% Similarity=0.401 Sum_probs=175.0
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------ceEEEEecc
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------~~i~~v~Q~ 169 (645)
|++ ++.++|++..+ ||||++. +|+++|+||||||||||+++|+|+++|++|+|.++|.+ .+||||||+
T Consensus 3 l~v-~~~k~~g~~~~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~ 78 (240)
T d2onka1 3 LKV-RAEKRLGNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQD 78 (240)
T ss_dssp EEE-EEEEEETTEEE--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSS
T ss_pred EEE-EEEEEECCEEE--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeeccc
Confidence 677 68999998765 7999995 68999999999999999999999999999999998742 369999999
Q ss_pred CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCC
Q 006442 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (645)
Q Consensus 170 ~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (645)
+.+++.+||+||+..++. ..+..+.++++.++++.+|+.
T Consensus 79 ~~l~~~ltV~enl~~~l~-----------------------------------------~~~~~~~~~~v~~~l~~~gl~ 117 (240)
T d2onka1 79 YALFPHLSVYRNIAYGLR-----------------------------------------NVERVERDRRVREMAEKLGIA 117 (240)
T ss_dssp CCCCTTSCHHHHHHTTCT-----------------------------------------TSCHHHHHHHHHHHHHTTTCT
T ss_pred hhhcccchhhHhhhhhhc-----------------------------------------ccCHHHHHHHHHHHHHhcCcH
Confidence 999899999999964321 012223456788899999996
Q ss_pred cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcCe
Q 006442 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTK 325 (645)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d~ 325 (645)
+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++++ +.|.|||+||||++++.++|||
T Consensus 118 -~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adr 196 (240)
T d2onka1 118 -HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADE 196 (240)
T ss_dssp -TTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSE
T ss_pred -hhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCE
Confidence 68999999999999999999999999999999999999999999999988764 3589999999999999999999
Q ss_pred EEEEcCceeEEeccChHHHH
Q 006442 326 IVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 326 i~~l~~G~~~~~~g~~~~~~ 345 (645)
|++|++|++ ...|+..+.+
T Consensus 197 i~vm~~G~i-i~~G~~~el~ 215 (240)
T d2onka1 197 VAVMLNGRI-VEKGKLKELF 215 (240)
T ss_dssp EEEEETTEE-EEEECHHHHH
T ss_pred EEEEECCEE-EEEecHHHHh
Confidence 999999998 4568776654
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.6e-46 Score=375.25 Aligned_cols=204 Identities=23% Similarity=0.340 Sum_probs=179.7
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---------cchhc
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNYFE 494 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------~~~~~ 494 (645)
.|+++||+++|+++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+|++
T Consensus 2 aI~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vp 81 (238)
T d1vpla_ 2 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLP 81 (238)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEEC
T ss_pred CEEEEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEee
Confidence 489999999999999999999999999999999999999999999999999999999999998863 23555
Q ss_pred cchhhcCCCCCCHHHHHHhhhcc--c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEee
Q 006442 495 QNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568 (645)
Q Consensus 495 q~~~~~l~~~~tv~e~v~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 568 (645)
|. ..+++.+|+.||+.+.... . ..+.+...++.+++ .+..++++.+|||||||||+|||||+.+|++||||
T Consensus 82 q~--~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLD 158 (238)
T d1vpla_ 82 EE--AGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGL-GEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILD 158 (238)
T ss_dssp TT--CCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC-GGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred ec--cccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 53 4677889999999765321 1 12346778888999 57789999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHH
Q 006442 569 EPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSL 631 (645)
Q Consensus 569 EPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~ 631 (645)
|||+|||+.++..+.++|++. +.|||++|||++++..+||||++|++|+++. .|+.+++.+.
T Consensus 159 EPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~-~g~~~el~~~ 223 (238)
T d1vpla_ 159 EPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVE-TGTVEELKER 223 (238)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEE-EEEHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHHhc
Confidence 999999999999999999754 5699999999999999999999999999995 5888887653
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-46 Score=376.82 Aligned_cols=212 Identities=24% Similarity=0.415 Sum_probs=165.0
Q ss_pred EEEEeEEEEeC--CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc----------eEEE
Q 006442 98 VKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAF 165 (645)
Q Consensus 98 i~i~nls~~y~--~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~----------~i~~ 165 (645)
|+++||+|+|+ +.++|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+. +|+|
T Consensus 2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 81 (241)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEE
Confidence 89999999994 35699999999999999999999999999999999999999999999998542 5999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchh
Q 006442 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (645)
Q Consensus 166 v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (645)
|+|+|++ ++.||+||+...... .. .+.+....+.+ .+.+.+..+ .
T Consensus 82 v~Q~~~l-f~~Ti~eNi~~~~~~-~~----~~~~~~~~~~~---------------------------~~~~~i~~~--~ 126 (241)
T d2pmka1 82 VLQDNVL-LNRSIIDNISLANPG-MS----VEKVIYAAKLA---------------------------GAHDFISEL--R 126 (241)
T ss_dssp ECSSCCC-TTSBHHHHHCTTSTT-CC----HHHHHHHHHHH---------------------------TCHHHHTTS--T
T ss_pred Eeccccc-CCccccccccccCcc-cc----HHHHHHHHHHH---------------------------hhHHHHHhh--h
Confidence 9999987 578999999632111 00 00111111100 001111111 0
Q ss_pred cCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhc
Q 006442 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLC 323 (645)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~ 323 (645)
.|+. ......+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|++ .++|+|+|||+++.+. .|
T Consensus 127 ~~~~-t~i~~~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~ 204 (241)
T d2pmka1 127 EGYN-TIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NA 204 (241)
T ss_dssp TGGG-SBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TS
T ss_pred cchh-hhcCCCCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH-hC
Confidence 1221 233445689999999999999999999999999999999999999999888754 5899999999999885 69
Q ss_pred CeEEEEcCceeEEeccChHHHHHH
Q 006442 324 TKIVETEMGVSRTYEGNYSQYVLE 347 (645)
Q Consensus 324 d~i~~l~~G~~~~~~g~~~~~~~~ 347 (645)
|+|++|++|++ ...|++++.+.+
T Consensus 205 D~i~vl~~G~I-v~~G~~~ell~~ 227 (241)
T d2pmka1 205 DRIIVMEKGKI-VEQGKHKELLSE 227 (241)
T ss_dssp SEEEEEETTEE-EEEECHHHHHHS
T ss_pred CEEEEEECCEE-EEECCHHHHHhC
Confidence 99999999998 567888776544
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.8e-46 Score=376.60 Aligned_cols=215 Identities=23% Similarity=0.381 Sum_probs=166.6
Q ss_pred ccEEEEeEEEEeCCe---eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc----------e
Q 006442 96 SGVKLENISKSYKGV---TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------K 162 (645)
Q Consensus 96 ~~i~i~nls~~y~~~---~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~----------~ 162 (645)
..|+++||+|+|+++ .+|+||||+|++||++|||||||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 10 g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 89 (251)
T d1jj7a_ 10 GLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQ 89 (251)
T ss_dssp CCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHH
Confidence 359999999999753 499999999999999999999999999999999999999999999998642 5
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhh
Q 006442 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (645)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (645)
|+||+|+|.+ ++.||++|+..+....... ......... ......+..+
T Consensus 90 i~~v~Q~~~l-f~~tv~eni~~g~~~~~~~----~~~~~~~~~---------------------------~~~~~~i~~l 137 (251)
T d1jj7a_ 90 VAAVGQEPQV-FGRSLQENIAYGLTQKPTM----EEITAAAVK---------------------------SGAHSFISGL 137 (251)
T ss_dssp EEEECSSCCC-CSSBHHHHHHCSCSSCCCH----HHHHHHHHH---------------------------HTCHHHHHTS
T ss_pred hhhccccccc-cCcchhhhhhhhhcccchH----HHHHHHHHH---------------------------HHHHHHHHhc
Confidence 9999999987 4679999997432210000 000000000 0001111111
Q ss_pred chhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHH
Q 006442 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAF 318 (645)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~ 318 (645)
-. |+. ...++.+.+|||||||||+|||||+++|+||||||||++||+.+...+.+.|+ +.++|||+||||++.
T Consensus 138 ~~--g~~-~~i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~ 214 (251)
T d1jj7a_ 138 PQ--GYD-TEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSL 214 (251)
T ss_dssp TT--GGG-CBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHH
T ss_pred cc--cch-hhHhccCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHH
Confidence 11 222 23455678999999999999999999999999999999999999999988874 348999999999998
Q ss_pred HHhhcCeEEEEcCceeEEeccChHHHHHH
Q 006442 319 LDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (645)
Q Consensus 319 l~~~~d~i~~l~~G~~~~~~g~~~~~~~~ 347 (645)
+. .||+|++|++|++ ...|++.+.+.+
T Consensus 215 ~~-~aDrI~vl~~G~i-v~~Gt~~eLl~~ 241 (251)
T d1jj7a_ 215 VE-QADHILFLEGGAI-REGGTHQQLMEK 241 (251)
T ss_dssp HH-TCSEEEEEETTEE-EEEECHHHHHHH
T ss_pred HH-hCCEEEEEECCEE-EEECCHHHHHhC
Confidence 85 5999999999998 466888776543
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.3e-46 Score=374.52 Aligned_cols=202 Identities=25% Similarity=0.460 Sum_probs=171.2
Q ss_pred EEEEeeeeeeC--CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------cch
Q 006442 425 VTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNY 492 (645)
Q Consensus 425 i~~~~v~~~y~--~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~ 492 (645)
|+++||+|+|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 81 (241)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEE
Confidence 78999999995 457999999999999999999999999999999999999999999999999873 245
Q ss_pred hccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCCh----------hhhccCcCcCCHhHHHHHHHHHHHccCC
Q 006442 493 FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA----------DMLDRKVSLLSGGEKARLAFCKFMVKPS 562 (645)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSgGqkqrv~lAral~~~p 562 (645)
++|+. . .++.|+++|+.........+++...++..++.. ......+.+|||||||||+|||||+++|
T Consensus 82 v~Q~~--~-lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p 158 (241)
T d2pmka1 82 VLQDN--V-LLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 158 (241)
T ss_dssp ECSSC--C-CTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred Eeccc--c-cCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhccc
Confidence 66643 3 467899999988765555555555555544421 1234556799999999999999999999
Q ss_pred CeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHH
Q 006442 563 TLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSL 631 (645)
Q Consensus 563 ~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~ 631 (645)
+||||||||++||+.++..+.+.|++. +.|||+||||++.+. .||||++|++|+|++ .|+++++++.
T Consensus 159 ~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~i~vl~~G~Iv~-~G~~~ell~~ 227 (241)
T d2pmka1 159 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIVE-QGKHKELLSE 227 (241)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETTEEEE-EECHHHHHHS
T ss_pred chhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH-hCCEEEEEECCEEEE-ECCHHHHHhC
Confidence 999999999999999999999999875 459999999999885 599999999999996 5888888754
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=9.3e-47 Score=378.14 Aligned_cols=212 Identities=20% Similarity=0.370 Sum_probs=162.4
Q ss_pred cEEEEeEEEEeCC-eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceEEE
Q 006442 97 GVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (645)
Q Consensus 97 ~i~i~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i~~ 165 (645)
+|+++||+|+|++ +++|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+ .+|||
T Consensus 1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEE
Confidence 4899999999965 569999999999999999999999999999999999999999999998752 35999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchh
Q 006442 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (645)
Q Consensus 166 v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (645)
|+|+|.++ ..||+||+.......... +.+...++.+. ..+....
T Consensus 81 v~Q~~~lf-~~ti~eNi~~~~~~~~~~----~~~~~~~~~~~-------------------------------~~~~~~~ 124 (242)
T d1mv5a_ 81 VSQDSAIM-AGTIRENLTYGLEGDYTD----EDLWQVLDLAF-------------------------------ARSFVEN 124 (242)
T ss_dssp ECCSSCCC-CEEHHHHTTSCTTSCSCH----HHHHHHHHHHT-------------------------------CTTTTTS
T ss_pred EccccccC-Ccchhhheecccccccch----hhHHHHHHHHH-------------------------------hhhhhcc
Confidence 99999874 569999985322110000 00000000000 0000001
Q ss_pred c--CCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 006442 246 L--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 246 l--gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~ 321 (645)
+ ++.+ .....+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|++ .++|||+||||++.+..
T Consensus 125 ~~~~~~~-~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~ 203 (242)
T d1mv5a_ 125 MPDQLNT-EVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVD 203 (242)
T ss_dssp STTGGGC-EESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHH
T ss_pred Ccccccc-cccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh
Confidence 0 1111 12233578999999999999999999999999999999999998888887753 48999999999998865
Q ss_pred hcCeEEEEcCceeEEeccChHHHHHH
Q 006442 322 LCTKIVETEMGVSRTYEGNYSQYVLE 347 (645)
Q Consensus 322 ~~d~i~~l~~G~~~~~~g~~~~~~~~ 347 (645)
||+|++|++|++ ...|++++.+..
T Consensus 204 -~D~i~vl~~G~i-v~~G~~~eLl~~ 227 (242)
T d1mv5a_ 204 -ADKIYFIEKGQI-TGSGKHNELVAT 227 (242)
T ss_dssp -CSEEEEEETTEE-CCCSCHHHHHHH
T ss_pred -CCEEEEEECCEE-EEECCHHHHHhC
Confidence 999999999998 577888776543
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=2.7e-46 Score=374.70 Aligned_cols=203 Identities=22% Similarity=0.443 Sum_probs=168.5
Q ss_pred EEEEEeeeeeeCC-eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------cch
Q 006442 424 VVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNY 492 (645)
Q Consensus 424 ~i~~~~v~~~y~~-~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~ 492 (645)
+|+++||+|+|++ +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEE
Confidence 5899999999964 67999999999999999999999999999999999999999999999998763 245
Q ss_pred hccchhhcCCCCCCHHHHHHhhhc-cccHHHHHHHHhhcCCCh------hhh----ccCcCcCCHhHHHHHHHHHHHccC
Q 006442 493 FEQNQAEALDLDKTVLETVAEAAE-DWRIDDIKGLLGRCNFKA------DML----DRKVSLLSGGEKARLAFCKFMVKP 561 (645)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~v~~~~~-~~~~~~~~~~L~~~~l~~------~~~----~~~~~~LSgGqkqrv~lAral~~~ 561 (645)
++|+ +.+ ++.|+++|+..... ......+...++..++.. +.. ...+.+|||||||||+|||||+++
T Consensus 81 v~Q~--~~l-f~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~ 157 (242)
T d1mv5a_ 81 VSQD--SAI-MAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRN 157 (242)
T ss_dssp ECCS--SCC-CCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred Eccc--ccc-CCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 6665 334 56799999976532 334444555555444321 111 234567999999999999999999
Q ss_pred CCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHH
Q 006442 562 STLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSL 631 (645)
Q Consensus 562 p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~ 631 (645)
|+||||||||++||+.++..+.+.|++. +.|||+||||++.+.. ||||++|++|+|++ .|+++++++.
T Consensus 158 p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-~D~i~vl~~G~iv~-~G~~~eLl~~ 227 (242)
T d1mv5a_ 158 PKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVD-ADKIYFIEKGQITG-SGKHNELVAT 227 (242)
T ss_dssp CSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHH-CSEEEEEETTEECC-CSCHHHHHHH
T ss_pred CCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh-CCEEEEEECCEEEE-ECCHHHHHhC
Confidence 9999999999999999999999999875 5699999999999875 99999999999985 6999988754
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-45 Score=369.70 Aligned_cols=204 Identities=25% Similarity=0.473 Sum_probs=167.3
Q ss_pred cEEEEEeeeeeeCCe---eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------
Q 006442 423 SVVTIKNLEFGYEDR---LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~---~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (645)
+.|+++||+|+|+++ .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 10 g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 89 (251)
T d1jj7a_ 10 GLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQ 89 (251)
T ss_dssp CCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHH
Confidence 359999999999753 5899999999999999999999999999999999999999999999999873
Q ss_pred cchhccchhhcCCCCCCHHHHHHhhhc-cccHHHHH---------HHHhhc--CCChhhhccCcCcCCHhHHHHHHHHHH
Q 006442 490 PNYFEQNQAEALDLDKTVLETVAEAAE-DWRIDDIK---------GLLGRC--NFKADMLDRKVSLLSGGEKARLAFCKF 557 (645)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~v~~~~~-~~~~~~~~---------~~L~~~--~l~~~~~~~~~~~LSgGqkqrv~lAra 557 (645)
.+|++|+. .+ ++.|+.+|+..+.. ........ ..+..+ ++ ....++.+.+|||||||||+||||
T Consensus 90 i~~v~Q~~--~l-f~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~-~~~i~~~~~~LSGGqkQRvaiARa 165 (251)
T d1jj7a_ 90 VAAVGQEP--QV-FGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGY-DTEVDEAGSQLSGGQRQAVALARA 165 (251)
T ss_dssp EEEECSSC--CC-CSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGG-GCBCCSSCSSSCHHHHHHHHHHHH
T ss_pred hhhccccc--cc-cCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccc-hhhHhccCccCChhHceEEEEeec
Confidence 23455543 34 57899999987632 12222211 223333 22 123456678999999999999999
Q ss_pred HccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHHH
Q 006442 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSLW 632 (645)
Q Consensus 558 l~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~~ 632 (645)
|+++|+||||||||++||+.++..+.+.|.+. +.|||+||||++.+. .||||++|++|+|++ .|+++++++..
T Consensus 166 l~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~-~aDrI~vl~~G~iv~-~Gt~~eLl~~~ 242 (251)
T d1jj7a_ 166 LIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVE-QADHILFLEGGAIRE-GGTHQQLMEKK 242 (251)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHH-TCSEEEEEETTEEEE-EECHHHHHHHT
T ss_pred cccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEE-ECCHHHHHhCC
Confidence 99999999999999999999999999999754 469999999999886 499999999999996 58999987643
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=3.1e-45 Score=363.14 Aligned_cols=198 Identities=26% Similarity=0.425 Sum_probs=173.7
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cchhccc
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQN 496 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~q~ 496 (645)
|++ ++.++|++..+ |+||++. +|+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|+
T Consensus 3 l~v-~~~k~~g~~~~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~ 78 (240)
T d2onka1 3 LKV-RAEKRLGNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQD 78 (240)
T ss_dssp EEE-EEEEEETTEEE--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSS
T ss_pred EEE-EEEEEECCEEE--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeeccc
Confidence 667 67899987654 7999995 6899999999999999999999999999999999999873 3577765
Q ss_pred hhhcCCCCCCHHHHHHhhhcccc----HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCC
Q 006442 497 QAEALDLDKTVLETVAEAAEDWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572 (645)
Q Consensus 497 ~~~~l~~~~tv~e~v~~~~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~ 572 (645)
..+++.+||+||+.++...+. .+++.++++.+|+ .+..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 79 --~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl-~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts 155 (240)
T d2onka1 79 --YALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGI-AHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLS 155 (240)
T ss_dssp --CCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTC-TTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTS
T ss_pred --hhhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCc-HhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccc
Confidence 467888999999998754332 3458899999999 478999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 573 HLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 573 ~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
+||+.++..+.+.|++. +.|||+||||++++.++||||++|++|+++. .|..+++.+
T Consensus 156 ~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~-~G~~~el~~ 216 (240)
T d2onka1 156 AVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVE-KGKLKELFS 216 (240)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE-EecHHHHhc
Confidence 99999999999988754 5699999999999999999999999999986 577776643
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=2.3e-45 Score=369.84 Aligned_cols=204 Identities=25% Similarity=0.430 Sum_probs=175.3
Q ss_pred cEEEEEeeeeeeCC--eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------c
Q 006442 423 SVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------P 490 (645)
Q Consensus 423 ~~i~~~~v~~~y~~--~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~ 490 (645)
+-|+++||+|+|++ +++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 15 g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 94 (255)
T d2hyda1 15 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 94 (255)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred CEEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhhee
Confidence 45999999999975 57999999999999999999999999999999999999999999999999873 2
Q ss_pred chhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChh----------hhccCcCcCCHhHHHHHHHHHHHcc
Q 006442 491 NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD----------MLDRKVSLLSGGEKARLAFCKFMVK 560 (645)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSgGqkqrv~lAral~~ 560 (645)
+|++|+ + ..++.|+++|+.++......+++.++++.+++... .....+.+|||||||||+|||||++
T Consensus 95 ~~v~Q~--~-~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 95 GLVQQD--N-ILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp EEECSS--C-CCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred eeeecc--c-cCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhc
Confidence 455554 2 34678999999887666667777788887776321 1123456799999999999999999
Q ss_pred CCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHH
Q 006442 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSL 631 (645)
Q Consensus 561 ~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~ 631 (645)
+|+||||||||++||+.++..+.+.|.+. +.|||+||||++.+. .||||++|++|+|++ .|+++++++.
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~-~~D~ii~l~~G~iv~-~G~~~eLl~~ 242 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT-HADKIVVIENGHIVE-TGTHRELIAK 242 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT-TCSEEEEEETTEEEE-EECHHHHHHT
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEE-ECCHHHHHhC
Confidence 99999999999999999999999999865 459999999999885 599999999999996 5899988764
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.8e-45 Score=368.74 Aligned_cols=203 Identities=24% Similarity=0.404 Sum_probs=171.2
Q ss_pred EEEEEeeeeeeCC--eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------cc
Q 006442 424 VVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PN 491 (645)
Q Consensus 424 ~i~~~~v~~~y~~--~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~ 491 (645)
-|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 13 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 92 (253)
T d3b60a1 13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVA 92 (253)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEE
T ss_pred EEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEE
Confidence 4999999999974 46999999999999999999999999999999999999999999999998863 23
Q ss_pred hhccchhhcCCCCCCHHHHHHhhhc-cccHHHHHHHHhhcCCCh----------hhhccCcCcCCHhHHHHHHHHHHHcc
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAAE-DWRIDDIKGLLGRCNFKA----------DMLDRKVSLLSGGEKARLAFCKFMVK 560 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~~-~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSgGqkqrv~lAral~~ 560 (645)
|++|+. ..+..|+.+|+..+.. ....+++..+++..++.. ......+.+|||||||||+|||||++
T Consensus 93 ~v~Q~~---~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~ 169 (253)
T d3b60a1 93 LVSQNV---HLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 169 (253)
T ss_dssp EECSSC---CCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred EEeecc---ccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhc
Confidence 455542 3467899999987642 345556666665555421 12345567899999999999999999
Q ss_pred CCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHH
Q 006442 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSL 631 (645)
Q Consensus 561 ~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~ 631 (645)
+|+||||||||++||+.++..+.+.|++. +.|||+||||++.+. .||||++|++|+|++ .|+++++++.
T Consensus 170 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~v~vl~~G~Iv~-~G~~~eLl~~ 240 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVE-RGTHSELLAQ 240 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEE-EECHHHHHHH
T ss_pred CCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH-hCCEEEEEECCEEEE-ECCHHHHHhC
Confidence 99999999999999999999999999865 569999999999885 699999999999986 5898888764
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.8e-45 Score=371.13 Aligned_cols=214 Identities=24% Similarity=0.397 Sum_probs=166.4
Q ss_pred cEEEEeEEEEeCCe--eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc----------eEE
Q 006442 97 GVKLENISKSYKGV--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIA 164 (645)
Q Consensus 97 ~i~i~nls~~y~~~--~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~----------~i~ 164 (645)
.|+++||+|+|++. ++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.++|.+. .|+
T Consensus 13 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 92 (253)
T d3b60a1 13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVA 92 (253)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEE
T ss_pred EEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEE
Confidence 49999999999753 599999999999999999999999999999999999999999999987532 599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
|++|++.+ +..|+++|+..+...... .+++.++++.+ .+.+.+..+ .
T Consensus 93 ~v~Q~~~l-~~~ti~~n~~~~~~~~~~----~~~i~~a~~~~---------------------------~l~~~i~~l-~ 139 (253)
T d3b60a1 93 LVSQNVHL-FNDTVANNIAYARTEEYS----REQIEEAARMA---------------------------YAMDFINKM-D 139 (253)
T ss_dssp EECSSCCC-CSSBHHHHHHTTTTSCCC----HHHHHHHHHTT---------------------------TCHHHHHHS-T
T ss_pred EEeecccc-CCcchhhhhhhcCcccCC----HHHHHHHHHHH---------------------------hHHHHHHhc-c
Confidence 99999987 677999998643211000 01111111111 011111111 1
Q ss_pred hcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhh
Q 006442 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQL 322 (645)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~ 322 (645)
.|+.+ ...+.+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|++ .++|||+||||++.+. .
T Consensus 140 -~gl~t-~~~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~ 216 (253)
T d3b60a1 140 -NGLDT-IIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-Q 216 (253)
T ss_dssp -TGGGS-BCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-T
T ss_pred -ccchh-hhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH-h
Confidence 13322 23345789999999999999999999999999999999999999999888753 4899999999999885 6
Q ss_pred cCeEEEEcCceeEEeccChHHHHHH
Q 006442 323 CTKIVETEMGVSRTYEGNYSQYVLE 347 (645)
Q Consensus 323 ~d~i~~l~~G~~~~~~g~~~~~~~~ 347 (645)
||+|++|++|++ ...|++++.+.+
T Consensus 217 ~D~v~vl~~G~I-v~~G~~~eLl~~ 240 (253)
T d3b60a1 217 ADEIVVVEDGII-VERGTHSELLAQ 240 (253)
T ss_dssp CSEEEEEETTEE-EEEECHHHHHHH
T ss_pred CCEEEEEECCEE-EEECCHHHHHhC
Confidence 999999999998 567888776543
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=3.4e-45 Score=368.63 Aligned_cols=213 Identities=26% Similarity=0.438 Sum_probs=165.8
Q ss_pred cEEEEeEEEEeCC--eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc----------eEE
Q 006442 97 GVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIA 164 (645)
Q Consensus 97 ~i~i~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~----------~i~ 164 (645)
.|+++||+|+|++ .++|+||||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.+. .|+
T Consensus 16 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 95 (255)
T d2hyda1 16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIG 95 (255)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEE
T ss_pred EEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheee
Confidence 4999999999965 4699999999999999999999999999999999999999999999987532 599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
||+|++++ +..||+|||..+.... . .+++.++++.+ .+.+.+..+-.
T Consensus 96 ~v~Q~~~l-f~~Ti~eNi~~g~~~~-~----~~~~~~al~~~---------------------------~l~~~i~~lp~ 142 (255)
T d2hyda1 96 LVQQDNIL-FSDTVKENILLGRPTA-T----DEEVVEAAKMA---------------------------NAHDFIMNLPQ 142 (255)
T ss_dssp EECSSCCC-CSSBHHHHHGGGCSSC-C----HHHHHHHHHHT---------------------------TCHHHHHTSTT
T ss_pred eeeccccC-CCCCHHHHHhccCcCC-C----HHHHHHHHHHh---------------------------CCHHHHHhccc
Confidence 99999987 5779999996432110 0 01111111111 11111111111
Q ss_pred hcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhh
Q 006442 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQL 322 (645)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~ 322 (645)
|+.+.. .....+|||||||||+|||||+++|+|||||||||+||+.+...+.+.|++ .++|||+||||++.+. .
T Consensus 143 --gl~t~i-~~~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~-~ 218 (255)
T d2hyda1 143 --GYDTEV-GERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT-H 218 (255)
T ss_dssp --GGGCBC-CGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT-T
T ss_pred --cccchh-cCCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-h
Confidence 222222 233678999999999999999999999999999999999999999988743 5889999999999885 6
Q ss_pred cCeEEEEcCceeEEeccChHHHHHH
Q 006442 323 CTKIVETEMGVSRTYEGNYSQYVLE 347 (645)
Q Consensus 323 ~d~i~~l~~G~~~~~~g~~~~~~~~ 347 (645)
||+|++|++|++ ...|++++.+.+
T Consensus 219 ~D~ii~l~~G~i-v~~G~~~eLl~~ 242 (255)
T d2hyda1 219 ADKIVVIENGHI-VETGTHRELIAK 242 (255)
T ss_dssp CSEEEEEETTEE-EEEECHHHHHHT
T ss_pred CCEEEEEECCEE-EEECCHHHHHhC
Confidence 999999999998 566887765543
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.7e-42 Score=351.95 Aligned_cols=205 Identities=24% Similarity=0.356 Sum_probs=155.2
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCCCCC
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~T 177 (645)
|+++|++ |.++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++| +|+|++|+++++ ..|
T Consensus 39 i~~~~~~--~~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g---~i~~v~Q~~~l~-~~t 112 (281)
T d1r0wa_ 39 VSFSHLC--LVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG---RVSFCSQFSWIM-PGT 112 (281)
T ss_dssp -CHHHHH--HTTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS---CEEEECSSCCCC-SEE
T ss_pred EEEEEcC--CCCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC---EEEEEecccccc-Cce
Confidence 4455444 3678999999999999999999999999999999999999999999999875 699999999874 569
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccC
Q 006442 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (645)
Q Consensus 178 v~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~ 257 (645)
|+||+..+.... . ..+...++.+ .+...+..+.... .....+.+
T Consensus 113 v~eni~~~~~~~--~----~~~~~~~~~~---------------------------~~~~~i~~l~~~~---~~~~~~~~ 156 (281)
T d1r0wa_ 113 IKENIIFGVSYD--E----YRYKSVVKAC---------------------------QLQQDITKFAEQD---NTVLGEGG 156 (281)
T ss_dssp HHHHHTTTSCCC--H----HHHHHHHHHT---------------------------TCHHHHTTSTTGG---GCEECTTC
T ss_pred eecccccccccc--c----hHHHHHHHHH---------------------------HhHHHHHhchhhh---hhhhhhhc
Confidence 999986332100 0 0001111100 0111111111111 12234456
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH-Hc--cCCCeEEEEecCHHHHHhhcCeEEEEcCcee
Q 006442 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY-LG--KQDVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (645)
Q Consensus 258 ~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~-L~--~~g~tvIivsHd~~~l~~~~d~i~~l~~G~~ 334 (645)
.+|||||||||+|||||+++|+||||||||++||+.+.+.+.+. +. ..++|+|+|||+++.+. .||+|++|++|++
T Consensus 157 ~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~-~aDrI~vl~~G~i 235 (281)
T d1r0wa_ 157 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLR-KADKILILHQGSS 235 (281)
T ss_dssp TTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHH-TCSEEEEEETTEE
T ss_pred cCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHH-hCCEEEEEECCEE
Confidence 78999999999999999999999999999999999999988765 33 25889999999999874 6999999999998
Q ss_pred EEeccChHHHHH
Q 006442 335 RTYEGNYSQYVL 346 (645)
Q Consensus 335 ~~~~g~~~~~~~ 346 (645)
.+.|++++...
T Consensus 236 -~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 236 -YFYGTFSELQS 246 (281)
T ss_dssp -EEEECHHHHHH
T ss_pred -EEECCHHHHhc
Confidence 56788877643
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.6e-41 Score=336.72 Aligned_cols=198 Identities=25% Similarity=0.409 Sum_probs=168.0
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc----------ch
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP----------NY 492 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~----------~~ 492 (645)
.+|+++||+++| .|++|||+|++||++||+||||||||||+++|+|+. |++|+|.++|.++.. .|
T Consensus 2 ~il~~~dv~~~~----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~ 76 (231)
T d1l7vc_ 2 IVMQLQDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAY 76 (231)
T ss_dssp EEEEEEEECCTT----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEE
T ss_pred eEEEEECcccCc----eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhcee
Confidence 368999998765 599999999999999999999999999999999975 688999999987632 23
Q ss_pred hccchhhcCCCCCCHHHHHHhhhcc-ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHcc-------CCCe
Q 006442 493 FEQNQAEALDLDKTVLETVAEAAED-WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK-------PSTL 564 (645)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~v~~~~~~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~-------~p~l 564 (645)
+.|. ....+..++++++...... ...+.+.++++.+++. +..++++.+|||||||||+|||||++ +|+|
T Consensus 77 ~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~l 153 (231)
T d1l7vc_ 77 LSQQ--QTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQL 153 (231)
T ss_dssp ECSC--CCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCT-TTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCE
T ss_pred eecc--ccCCccccHHHHhhhccchhhHHHHHHHHHHhcCCH-hHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCE
Confidence 3333 2344567888888765443 3345677889999995 67799999999999999999999997 6799
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 565 LVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 565 LlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
|||||||+|||+.++..+.++|++. +.|||+||||++++.++|||+++|++|+++. .|+.++.+
T Consensus 154 lllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~-~G~~~ev~ 220 (231)
T d1l7vc_ 154 LLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLA-SGRREEVL 220 (231)
T ss_dssp EEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECC-CSBHHHHS
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEE-ECCHHHHh
Confidence 9999999999999999999988754 5699999999999999999999999999985 68877764
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.4e-41 Score=329.77 Aligned_cols=186 Identities=22% Similarity=0.332 Sum_probs=147.8
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----ceEEEEeccCc
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEFE 171 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-----~~i~~v~Q~~~ 171 (645)
.|+++|++|+|+ +++|+||||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ .+++|+||++.
T Consensus 2 ~lev~~ls~~y~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~~ 80 (200)
T d1sgwa_ 2 KLEIRDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEII 80 (200)
T ss_dssp EEEEEEEEEESS-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCC
T ss_pred eEEEEEEEEEeC-CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeeccc
Confidence 389999999995 579999999999999999999999999999999999999999999998753 36999999988
Q ss_pred cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcc
Q 006442 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (645)
Q Consensus 172 ~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~ 251 (645)
++...|+.+++..... +. ....-+..+.+.++.+++.
T Consensus 81 ~~~~~t~~~~l~~~~~---------------~~--------------------------~~~~~~~~~~~~l~~~~~~-- 117 (200)
T d1sgwa_ 81 VPRKISVEDYLKAVAS---------------LY--------------------------GVKVNKNEIMDALESVEVL-- 117 (200)
T ss_dssp CCTTSBHHHHHHHHHH---------------HT--------------------------TCCCCHHHHHHHHHHTTCC--
T ss_pred CCCCcCHHHHHHHHHH---------------hc--------------------------CCccCHHHHHHHHHHcCCc--
Confidence 8788899998742100 00 0001112333445555553
Q ss_pred cccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcCeEE
Q 006442 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIV 327 (645)
Q Consensus 252 ~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d~i~ 327 (645)
..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.+. +.+.+||.++|++ .+||++.
T Consensus 118 ~~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~ 193 (200)
T d1sgwa_ 118 DLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNE 193 (200)
T ss_dssp CTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TTSSEEE
T ss_pred ccccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh----hhcchhh
Confidence 2346689999999999999999999999999999999999999988876553 3455666666665 4799998
Q ss_pred EEc
Q 006442 328 ETE 330 (645)
Q Consensus 328 ~l~ 330 (645)
.+.
T Consensus 194 ~l~ 196 (200)
T d1sgwa_ 194 NLH 196 (200)
T ss_dssp EGG
T ss_pred hee
Confidence 874
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.1e-41 Score=336.16 Aligned_cols=197 Identities=28% Similarity=0.335 Sum_probs=164.5
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc----------eEEEE
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~----------~i~~v 166 (645)
.|+++|++++| +|++|||+|++||++||+||||||||||+++|+|+. |++|+|.++|.+. ..+|+
T Consensus 3 il~~~dv~~~~----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~~ 77 (231)
T d1l7vc_ 3 VMQLQDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAYL 77 (231)
T ss_dssp EEEEEEECCTT----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEEE
T ss_pred EEEEECcccCc----eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhceee
Confidence 58999997665 699999999999999999999999999999999976 6899999988642 48999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhc
Q 006442 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (645)
Q Consensus 167 ~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (645)
+|.....+..++++++.... ......+.+.+++..+
T Consensus 78 ~~~~~~~~~~~v~~~~~~~~--------------------------------------------~~~~~~~~~~~~~~~~ 113 (231)
T d1l7vc_ 78 SQQQTPPFATPVWHYLTLHQ--------------------------------------------HDKTRTELLNDVAGAL 113 (231)
T ss_dssp CSCCCCCSSCBHHHHHHHHC--------------------------------------------SCTTCHHHHHHHHHHT
T ss_pred eccccCCccccHHHHhhhcc--------------------------------------------chhhHHHHHHHHHHhc
Confidence 99877667778888764210 0011123455667777
Q ss_pred CCCcccccccCCCCChHHHHHHHHHHHHcc-------CCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCH
Q 006442 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQ-------DPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDR 316 (645)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRvaLAraL~~-------~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~ 316 (645)
++. +..++++.+|||||||||+|||||++ +|+||||||||+|||+.++..+.++++ +.|+|||++|||+
T Consensus 114 ~l~-~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl 192 (231)
T d1l7vc_ 114 ALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDL 192 (231)
T ss_dssp TCT-TTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCH
T ss_pred CCH-hHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 886 56788899999999999999999997 779999999999999999998887764 5799999999999
Q ss_pred HHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 317 AFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 317 ~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
+++.++||||++|++|++ .+.|+..+.
T Consensus 193 ~~~~~~~dri~vl~~G~i-v~~G~~~ev 219 (231)
T d1l7vc_ 193 NHTLRHAHRAWLLKGGKM-LASGRREEV 219 (231)
T ss_dssp HHHHHHCSBCCBEETTEE-CCCSBHHHH
T ss_pred HHHHHHCCEEEEEECCEE-EEECCHHHH
Confidence 999999999999999998 566776554
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=8.3e-41 Score=341.93 Aligned_cols=195 Identities=24% Similarity=0.388 Sum_probs=155.7
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCCCC
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLD 504 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~ 504 (645)
|.++|+++ .++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+ .+|++|.. .+ +.
T Consensus 39 i~~~~~~~--~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~---i~~v~Q~~--~l-~~ 110 (281)
T d1r0wa_ 39 VSFSHLCL--VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR---VSFCSQFS--WI-MP 110 (281)
T ss_dssp -CHHHHHH--TTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSC---EEEECSSC--CC-CS
T ss_pred EEEEEcCC--CCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCE---EEEEeccc--cc-cC
Confidence 55555543 5679999999999999999999999999999999999999999999999984 56777653 33 56
Q ss_pred CCHHHHHHhhhccccHHHHHHHHhhcCCCh----------hhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCC
Q 006442 505 KTVLETVAEAAEDWRIDDIKGLLGRCNFKA----------DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574 (645)
Q Consensus 505 ~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~L 574 (645)
.|+.+|+.++.. .........++.+++.. ....+.+.+|||||||||+|||||+++|+||||||||++|
T Consensus 111 ~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~L 189 (281)
T d1r0wa_ 111 GTIKENIIFGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYL 189 (281)
T ss_dssp EEHHHHHTTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSS
T ss_pred ceeecccccccc-ccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccC
Confidence 799999987642 23333444444433311 1223456689999999999999999999999999999999
Q ss_pred CHHHHHHHHHH-HHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 575 DIPSKEMLEEA-ISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 575 D~~s~~~l~~~-l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|+.++..+.+. +... +.|+|+||||++.+. .||||++|++|+++. .|+++++.+
T Consensus 190 D~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~-~aDrI~vl~~G~i~~-~Gt~~eL~~ 246 (281)
T d1r0wa_ 190 DVFTEEQVFESCVCKLMANKTRILVTSKMEHLR-KADKILILHQGSSYF-YGTFSELQS 246 (281)
T ss_dssp CHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHH-TCSEEEEEETTEEEE-EECHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEechHHHHH-hCCEEEEEECCEEEE-ECCHHHHhc
Confidence 99999888775 4433 469999999998874 699999999999986 589888865
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.1e-39 Score=318.14 Aligned_cols=183 Identities=26% Similarity=0.410 Sum_probs=150.6
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc-----chhccchh
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP-----NYFEQNQA 498 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~-----~~~~q~~~ 498 (645)
.|+++||+++|+ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .|.+|+
T Consensus 2 ~lev~~ls~~y~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~-- 78 (200)
T d1sgwa_ 2 KLEIRDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEE-- 78 (200)
T ss_dssp EEEEEEEEEESS-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSS--
T ss_pred eEEEEEEEEEeC-CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeec--
Confidence 489999999995 679999999999999999999999999999999999999999999999988742 233332
Q ss_pred hcCCCCCCHHHHHHhhhc----cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCC
Q 006442 499 EALDLDKTVLETVAEAAE----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574 (645)
Q Consensus 499 ~~l~~~~tv~e~v~~~~~----~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~L 574 (645)
..+....++.+++..... .....++.+.++.+++. + .++++.+|||||||||+|||||+.+|++|||||||+||
T Consensus 79 ~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gL 156 (200)
T d1sgwa_ 79 IIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL-D-LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAI 156 (200)
T ss_dssp CCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC-C-TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTS
T ss_pred ccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCc-c-cccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCccccc
Confidence 345567899999875432 23456778888888873 3 45778999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhc---Cc-eEEEEecCHHHHHhhCCEEEEEeC
Q 006442 575 DIPSKEMLEEAISEY---KG-TVITVSHDRYFVKQIVNRVVEVKG 615 (645)
Q Consensus 575 D~~s~~~l~~~l~~~---~~-tvi~vsHd~~~i~~~~d~v~~l~~ 615 (645)
|+.++..+.+.|.+. ++ +||+++||+ .+||++.+|++
T Consensus 157 D~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 157 DEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp CTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TTSSEEEEGGG
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEechh----hhcchhhheee
Confidence 999999998888765 23 444444554 47999988753
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.65 E-value=5.6e-18 Score=159.41 Aligned_cols=164 Identities=15% Similarity=0.129 Sum_probs=105.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhh--cCCCCCCHHHHHHhhhccccHHHHHHHHhh
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAE--ALDLDKTVLETVAEAAEDWRIDDIKGLLGR 529 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~--~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~ 529 (645)
+++|+||||||||||+++|+|.++|..|.+.+.+.+.... -.+.... ......+ ....... ......++
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~~ 72 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPET-KKRTGFRIITTEGKKK-------IFSSKFF-TSKKLVGS 72 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC-------CCEEEEEETTCCEE-------EEEETTC-CCSSEETT
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHH-HHhhhhhhhhhhHHHH-------HHhhhhh-hhhhhhhh
Confidence 6899999999999999999999999999998876542110 0000000 0000000 0000000 00000011
Q ss_pred cCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCC--CCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhC
Q 006442 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNH--LDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIV 607 (645)
Q Consensus 530 ~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~--LD~~s~~~l~~~l~~~~~tvi~vsHd~~~i~~~~ 607 (645)
++. +.....+|+|++++.++++++..+|++|++|||+.. .+.+....+.++++..+.++|+++|+... ..+|
T Consensus 73 ~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~~-~~~~ 146 (178)
T d1ye8a1 73 YGV-----NVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDV-HPLV 146 (178)
T ss_dssp EEE-----CHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCC-SHHH
T ss_pred hhc-----CcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEEccHHH-HHhh
Confidence 111 122335899999999999999999999999997644 35566677777887778899999999764 4578
Q ss_pred CEEEEEeCCeEEeeC-CChhHHHH
Q 006442 608 NRVVEVKGSNLQDYA-GDYNQVQS 630 (645)
Q Consensus 608 d~v~~l~~g~i~~~~-~~~~~~~~ 630 (645)
+++..+.+|++...+ .+++.+.+
T Consensus 147 ~~i~~~~~~~i~~v~~~nrd~~~~ 170 (178)
T d1ye8a1 147 KEIRRLPGAVLIELTPENRDVILE 170 (178)
T ss_dssp HHHHTCTTCEEEECCTTTTTTHHH
T ss_pred ceEEEEeCCEEEEECCccHHHHHH
Confidence 999999999997643 34454433
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.61 E-value=2.5e-17 Score=154.81 Aligned_cols=78 Identities=10% Similarity=0.009 Sum_probs=64.9
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC--CCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcCcee
Q 006442 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNH--LDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (645)
Q Consensus 257 ~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~--LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~i~~l~~G~~ 334 (645)
..++|+|+++|.++++++..+|++|++|||... .+......+.+.++..+.|+|+++|+... ..+|+++..+.+|++
T Consensus 79 ~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~~-~~~~~~i~~~~~~~i 157 (178)
T d1ye8a1 79 YFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDV-HPLVKEIRRLPGAVL 157 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCC-SHHHHHHHTCTTCEE
T ss_pred hhhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEEccHHH-HHhhceEEEEeCCEE
Confidence 356899999999999999999999999997544 35566777888888889999999999764 457888888888886
Q ss_pred E
Q 006442 335 R 335 (645)
Q Consensus 335 ~ 335 (645)
.
T Consensus 158 ~ 158 (178)
T d1ye8a1 158 I 158 (178)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.04 E-value=7e-10 Score=112.35 Aligned_cols=76 Identities=32% Similarity=0.479 Sum_probs=62.8
Q ss_pred CcCcCCHhHHHHHHHHHHH----ccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhCCEEEEE
Q 006442 540 KVSLLSGGEKARLAFCKFM----VKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEV 613 (645)
Q Consensus 540 ~~~~LSgGqkqrv~lAral----~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~d~v~~l 613 (645)
.+..+|+|||+...++..+ ..++.++++|||-+||+|.....+.+.|++.. ..||++||...++. .+|+++.+
T Consensus 216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~-~~d~~~~v 294 (308)
T d1e69a_ 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVME-AADLLHGV 294 (308)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGG-GCSEEEEE
T ss_pred hhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH-hcccEEEE
Confidence 4568999999998776653 45689999999999999999999999998653 48999999999886 48998664
Q ss_pred --eCC
Q 006442 614 --KGS 616 (645)
Q Consensus 614 --~~g 616 (645)
++|
T Consensus 295 ~~~~g 299 (308)
T d1e69a_ 295 TMVNG 299 (308)
T ss_dssp EESSS
T ss_pred EEeCC
Confidence 455
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.99 E-value=2.5e-09 Score=108.12 Aligned_cols=79 Identities=19% Similarity=0.309 Sum_probs=63.5
Q ss_pred ccCCCCChHHHHHHHHHHH----HccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcCeEEE
Q 006442 255 RLVASFSSGWQMRMSLGKI----LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVE 328 (645)
Q Consensus 255 ~~~~~LSGGqkqRvaLAra----L~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~d~i~~ 328 (645)
.....+|+|||+...++.. ....+.++++|||-+||+|.....|.++|++ .+.-||++||...+++ .+|+++.
T Consensus 215 ~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~-~~d~~~~ 293 (308)
T d1e69a_ 215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVME-AADLLHG 293 (308)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGG-GCSEEEE
T ss_pred chhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH-hcccEEE
Confidence 3467899999999877665 3456789999999999999999999988853 4678999999999996 4687744
Q ss_pred --EcCcee
Q 006442 329 --TEMGVS 334 (645)
Q Consensus 329 --l~~G~~ 334 (645)
+++|..
T Consensus 294 v~~~~g~s 301 (308)
T d1e69a_ 294 VTMVNGVS 301 (308)
T ss_dssp EEESSSCE
T ss_pred EEEeCCEE
Confidence 566643
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.67 E-value=2.3e-08 Score=105.06 Aligned_cols=74 Identities=28% Similarity=0.409 Sum_probs=61.4
Q ss_pred cCcCcCCHhHHHHHHHHHHH----ccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcC---ceEEEEecCHHHHHhhCCEEE
Q 006442 539 RKVSLLSGGEKARLAFCKFM----VKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK---GTVITVSHDRYFVKQIVNRVV 611 (645)
Q Consensus 539 ~~~~~LSgGqkqrv~lAral----~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~---~tvi~vsHd~~~i~~~~d~v~ 611 (645)
.+...||||||.+++||-.+ ..++++++||||+++||+.....+.+.|.+.. ..+|++||+..++. .+|+++
T Consensus 328 ~~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~-~ad~~~ 406 (427)
T d1w1wa_ 328 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFE-KSDALV 406 (427)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHT-TCSEEE
T ss_pred hhhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHH-hcccEE
Confidence 45567999999998776543 46788999999999999999999999997652 36999999998775 589988
Q ss_pred EE
Q 006442 612 EV 613 (645)
Q Consensus 612 ~l 613 (645)
.+
T Consensus 407 ~V 408 (427)
T d1w1wa_ 407 GV 408 (427)
T ss_dssp EE
T ss_pred EE
Confidence 66
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.61 E-value=4.3e-08 Score=102.92 Aligned_cols=74 Identities=19% Similarity=0.407 Sum_probs=59.8
Q ss_pred ccCCCCChHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCeEE
Q 006442 255 RLVASFSSGWQMRMSLGKIL----LQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIV 327 (645)
Q Consensus 255 ~~~~~LSGGqkqRvaLAraL----~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d~i~ 327 (645)
+++..||||||.+++||-.+ ..++++++||||+++||+..+..+.++|+ ..+.-+|++||+...+.. +|+++
T Consensus 328 ~~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~-ad~~~ 406 (427)
T d1w1wa_ 328 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEK-SDALV 406 (427)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTT-CSEEE
T ss_pred hhhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHh-cccEE
Confidence 34578899999998877543 45778999999999999999999988874 335569999999998865 68766
Q ss_pred EE
Q 006442 328 ET 329 (645)
Q Consensus 328 ~l 329 (645)
.+
T Consensus 407 ~V 408 (427)
T d1w1wa_ 407 GV 408 (427)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.10 E-value=1.6e-05 Score=76.23 Aligned_cols=45 Identities=16% Similarity=0.066 Sum_probs=34.4
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHH----HHHHccCCCeEEEEecCHHHHH
Q 006442 276 QDPDLLLLDEPTNHLDLDTIEWL----EGYLGKQDVPMVIISHDRAFLD 320 (645)
Q Consensus 276 ~~p~iLLLDEPts~LD~~~~~~l----~~~L~~~g~tvIivsHd~~~l~ 320 (645)
.+..++|+||+..|=|+.....+ .+.|.+.+..++++||..+...
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 45569999999999999764433 4455556888999999987654
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.94 E-value=1.5e-05 Score=76.98 Aligned_cols=44 Identities=18% Similarity=0.079 Sum_probs=31.4
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHH----HHHH-ccCCCeEEEEecCHHHH
Q 006442 276 QDPDLLLLDEPTNHLDLDTIEWL----EGYL-GKQDVPMVIISHDRAFL 319 (645)
Q Consensus 276 ~~p~iLLLDEPts~LD~~~~~~l----~~~L-~~~g~tvIivsHd~~~l 319 (645)
.+..++|+||+..|=++.....+ .+.| .+.+..+|++||..+..
T Consensus 119 ~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 119 TEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred ccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence 44559999999999998765443 2333 44567889999987644
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.74 E-value=0.00017 Score=68.89 Aligned_cols=46 Identities=15% Similarity=0.160 Sum_probs=34.8
Q ss_pred ccCCCeEEeeCCCCCCCHHHHHHHHH----HHHhcCceEEEEecCHHHHH
Q 006442 559 VKPSTLLVLDEPTNHLDIPSKEMLEE----AISEYKGTVITVSHDRYFVK 604 (645)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~s~~~l~~----~l~~~~~tvi~vsHd~~~i~ 604 (645)
+.+..++|+||+.+|=|+.....+.. .|.+.+..++++||..+...
T Consensus 112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 35567999999999999987655444 33444668999999987654
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.52 E-value=4.1e-05 Score=73.81 Aligned_cols=45 Identities=13% Similarity=0.021 Sum_probs=31.8
Q ss_pred ccCCCeEEeeCCCCCCCHHHHHHHHHHH-H---hcC-ceEEEEecCHHHH
Q 006442 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAI-S---EYK-GTVITVSHDRYFV 603 (645)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~s~~~l~~~l-~---~~~-~tvi~vsHd~~~i 603 (645)
+.+..++|+||+.+|=++.....+..++ . ... ..+|++||..+..
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence 4556799999999999998876665432 2 222 3788888876544
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.22 E-value=1.3e-05 Score=73.87 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=27.9
Q ss_pred ceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHc
Q 006442 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 439 ~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g 472 (645)
-+++.++.+.+| +++|+|+|||||||+|.+|.-
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 366777888766 899999999999999999964
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.21 E-value=8.1e-06 Score=75.32 Aligned_cols=34 Identities=26% Similarity=0.318 Sum_probs=29.0
Q ss_pred eeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcC
Q 006442 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
.+++.+|.+.+| +++|+|+|||||||+|.+|.-.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 467778888876 9999999999999999999643
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.95 E-value=0.00054 Score=60.10 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=24.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECce
Q 006442 451 EKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (645)
Q Consensus 451 e~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~ 486 (645)
+.+.|+|++|||||||.+.|.... .|...++..
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~~d 35 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINRD 35 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC---CCCEEechH
Confidence 468899999999999999886532 245555543
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.94 E-value=0.00022 Score=67.85 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=26.5
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCCCccEEE
Q 006442 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155 (645)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~ 155 (645)
+|+.++++|++|+|||||++.|.|...-..|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 4889999999999999999999998776677765
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.93 E-value=0.00015 Score=66.51 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=24.6
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCCC
Q 006442 123 GEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (645)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~l~G~~~p 149 (645)
|.++.|+||+|||||||++.|....+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 889999999999999999999887654
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.85 E-value=0.00024 Score=63.41 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
+++|+|++|||||||++.|+..+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987543
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.81 E-value=0.00025 Score=63.29 Aligned_cols=25 Identities=32% Similarity=0.292 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLEKP 476 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~~p 476 (645)
+++|+|++|||||||++.|...+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999876543
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.80 E-value=0.0027 Score=61.54 Aligned_cols=35 Identities=31% Similarity=0.369 Sum_probs=27.7
Q ss_pred eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHH
Q 006442 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144 (645)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~ 144 (645)
.+-|+++.-=+.+|+++.|.|++|+|||||+.-|+
T Consensus 22 ~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp CTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred chhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 33455544337899999999999999999988776
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.79 E-value=0.00025 Score=64.91 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 006442 450 GEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (645)
Q Consensus 450 Ge~v~i~G~NGsGKSTLl~~l~g~~~p 476 (645)
|.++.|+||+|||||||++.|....+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 889999999999999999999887654
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.78 E-value=0.00032 Score=63.00 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=23.9
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q 006442 122 KGEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
.|.++.|+||+||||||+.+.|+..+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999999765
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.72 E-value=0.00015 Score=65.41 Aligned_cols=30 Identities=30% Similarity=0.277 Sum_probs=25.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCccEE
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I 154 (645)
.+.|+||+|+|||||++.++..+....+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v 32 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPV 32 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEE
Confidence 588999999999999999998886655444
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.71 E-value=0.00043 Score=65.70 Aligned_cols=34 Identities=38% Similarity=0.449 Sum_probs=26.3
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEE
Q 006442 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482 (645)
Q Consensus 449 ~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~ 482 (645)
+|.+.+++|++|+|||||++.|.+-.....|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 4789999999999999999999997766666664
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.67 E-value=0.00044 Score=62.05 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=28.0
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECc
Q 006442 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (645)
Q Consensus 449 ~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g 485 (645)
.|+++.|.|++||||||+.+.|+..+... .+.+++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~--~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGVP--KVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSC--EEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC--EEEecH
Confidence 58899999999999999999999876322 355554
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.62 E-value=0.0013 Score=66.03 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=27.1
Q ss_pred EECCcEEEEECCCCccHHHHHHHHHcCCCCCc
Q 006442 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151 (645)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~ 151 (645)
+..|.-+.|+|+.|||||||+++|++.++|..
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~ 194 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE 194 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhccccc
Confidence 34455589999999999999999999998754
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.62 E-value=0.00021 Score=68.12 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCCCccEEE
Q 006442 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155 (645)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~ 155 (645)
+|..++++|++|+|||||++.|.|...-..|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 4789999999999999999999998776677775
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.61 E-value=0.00016 Score=65.18 Aligned_cols=30 Identities=33% Similarity=0.502 Sum_probs=25.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCeeEE
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i 481 (645)
.|.|+||+|||||||++.++..+....+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v 32 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPV 32 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEE
Confidence 588999999999999999999886554433
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.58 E-value=0.00044 Score=61.87 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=23.9
Q ss_pred ECCcEEEEECCCCccHHHHHHHHHcCC
Q 006442 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
+.+.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998754
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.56 E-value=0.00027 Score=63.61 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLEKPR 477 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~~p~ 477 (645)
+++|+|++|||||||+..|...+...
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 68999999999999999988876543
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.55 E-value=0.00048 Score=61.77 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=23.8
Q ss_pred ECCcEEEEECCCCccHHHHHHHHHcCC
Q 006442 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
++|-++.|+|++||||||+.+.|+-.+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998544
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.53 E-value=0.00034 Score=62.85 Aligned_cols=26 Identities=23% Similarity=0.219 Sum_probs=22.4
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCCC
Q 006442 124 EKVGLVGVNGAGKTTQLRIIAGQEEP 149 (645)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~l~G~~~p 149 (645)
.+++|+|++|||||||+..|...+..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 37899999999999999988876653
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.47 E-value=0.00057 Score=61.44 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=21.6
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q 006442 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
..++|+|+.|||||||++.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999765
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.43 E-value=0.00075 Score=60.38 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=24.0
Q ss_pred ECCcEEEEECCCCccHHHHHHHHHcCC
Q 006442 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
++|-.++|.||.||||||+.+.|+-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999998754
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.39 E-value=0.00071 Score=60.42 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=24.2
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
+.+.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999999865
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.37 E-value=0.0068 Score=54.69 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.2
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHc
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g 472 (645)
+.-+.+.++|+.||||||+.+.++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998854
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.37 E-value=0.019 Score=55.04 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=21.3
Q ss_pred ECCcEEEEECCCCccHHHHHHHHH
Q 006442 121 KKGEKVGLVGVNGAGKTTQLRIIA 144 (645)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~l~ 144 (645)
-+|+++.|.|+.|+|||||+-.|+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 469999999999999999987665
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.36 E-value=0.00073 Score=60.70 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 451 EKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 451 e~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
.+|+|+|+.|||||||.+.|+..+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998763
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.34 E-value=0.01 Score=57.07 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=21.7
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHc
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g 472 (645)
.+|+.+.|.|+.|+|||||+..|+-
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4699999999999999999877653
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.28 E-value=0.00046 Score=65.73 Aligned_cols=34 Identities=32% Similarity=0.406 Sum_probs=22.6
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEE
Q 006442 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482 (645)
Q Consensus 449 ~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~ 482 (645)
+|.+++++|++|+|||||++.|.+-.....|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 4788999999999999999999997766666664
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.25 E-value=0.0011 Score=59.22 Aligned_cols=28 Identities=25% Similarity=0.448 Sum_probs=24.6
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
++|-.|+|+|+.||||||+.+.|+..+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 4677899999999999999999987654
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.24 E-value=0.00092 Score=60.96 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
++||.|+.|||||||.+.|.-.+
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l 46 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTL 46 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998543
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.24 E-value=0.0012 Score=58.91 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=23.2
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCC
Q 006442 123 GEKVGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
..++.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998764
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.23 E-value=0.00099 Score=59.56 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=24.0
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
.+|-+|.|+|++||||||+.+.|+..+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998655
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.22 E-value=0.0011 Score=58.09 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.4
Q ss_pred cEEEEECCCCccHHHHHHHHHc
Q 006442 124 EKVGLVGVNGAGKTTQLRIIAG 145 (645)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~l~G 145 (645)
+++.|+|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999998754
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.21 E-value=0.0012 Score=61.79 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=24.1
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCC
Q 006442 122 KGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
.|.++.|+||+|||||||++.|.-..|
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 488999999999999999999987654
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.20 E-value=0.001 Score=58.25 Aligned_cols=23 Identities=48% Similarity=0.466 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
.+.|+||+||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999998654
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.19 E-value=0.0011 Score=59.21 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 450 GEKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 450 Ge~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
..+|.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46889999999999999999999875
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.16 E-value=0.0013 Score=59.12 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.0
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCC
Q 006442 124 EKVGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
.+++|.|+.||||||+++.|+-.+.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999986543
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.16 E-value=0.0065 Score=58.62 Aligned_cols=24 Identities=38% Similarity=0.637 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 451 EKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 451 e~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
.-+.+.||.|||||+|.+.|+..+
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEeeCCCCCCccHHHHHHHHHc
Confidence 447799999999999999999875
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.15 E-value=0.0013 Score=61.45 Aligned_cols=27 Identities=26% Similarity=0.562 Sum_probs=24.1
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 449 RGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 449 ~Ge~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
+|.++.|+||+|+|||||++.|....+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 588999999999999999999987654
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.09 E-value=0.0013 Score=58.60 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=19.0
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q 006442 126 VGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G~ 146 (645)
++|+|+.||||||+.+.|+-.
T Consensus 7 I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999754
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.08 E-value=0.0013 Score=59.92 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
+|||.|+.|||||||.+.|...+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 589999999999999999986553
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.08 E-value=0.001 Score=60.71 Aligned_cols=26 Identities=38% Similarity=0.441 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q 006442 122 KGEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
+|-++.|+|+.||||||+.+.|+-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57799999999999999999998543
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.03 E-value=0.0015 Score=57.88 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.0
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCC
Q 006442 124 EKVGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
.++.|+||.||||||+.+.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999997653
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.96 E-value=0.0016 Score=56.99 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
.|.|+||+||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998866
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.94 E-value=0.0019 Score=57.97 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 006442 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPR 477 (645)
Q Consensus 450 Ge~v~i~G~NGsGKSTLl~~l~g~~~p~ 477 (645)
+.+|+|.|+.||||||+.+.|+..+...
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~ 28 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKE 28 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3589999999999999999998765443
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.92 E-value=0.0035 Score=56.73 Aligned_cols=23 Identities=48% Similarity=0.677 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
+|||+|+.|+|||||++.|+|.-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999853
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.91 E-value=0.0016 Score=59.74 Aligned_cols=23 Identities=17% Similarity=0.458 Sum_probs=20.8
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
.++|+|+.|+|||||++.|+|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 49999999999999999999963
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.91 E-value=0.0015 Score=57.87 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 451 EKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 451 e~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
..+.|+|+.||||||+.+.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999998764
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.89 E-value=0.0017 Score=59.67 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
+|+|+|+.|+|||||++.|+|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 59999999999999999999863
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=95.87 E-value=0.021 Score=55.17 Aligned_cols=30 Identities=27% Similarity=0.388 Sum_probs=26.4
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHcCCC
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
=|+.|.++-|.||.|||||||+..++....
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHH
Confidence 478999999999999999999998887543
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.80 E-value=0.0018 Score=57.54 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
.+.|+|+.||||||+.+.|+..+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997654
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.80 E-value=0.0021 Score=60.76 Aligned_cols=22 Identities=36% Similarity=0.371 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
+++|+|+.|||||||++.|+..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 6899999999999999999753
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.73 E-value=0.0082 Score=57.54 Aligned_cols=22 Identities=50% Similarity=0.665 Sum_probs=20.3
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q 006442 126 VGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
+.+.||.|||||+|.++|+...
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 6899999999999999999865
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.71 E-value=0.0027 Score=58.00 Aligned_cols=26 Identities=42% Similarity=0.514 Sum_probs=23.2
Q ss_pred ECCcEEEEECCCCccHHHHHHHHHcC
Q 006442 121 KKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
++|-.+.|+||.||||||+.+.|+-.
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHH
Confidence 46888999999999999999999953
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.68 E-value=0.0019 Score=57.96 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 451 EKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 451 e~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
-+++|+|+.|||||||++.|.+-.
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999998864
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.68 E-value=0.0024 Score=56.19 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
+++|+|+.|||||||++.+.+-.
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.67 E-value=0.0025 Score=59.35 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=28.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCc
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~ 171 (645)
++||.|+.|||||||.+.|+-.+....- ......+.+++++-+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~----~~~~~~~~vi~~D~y 46 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEV----DYRQKQVVILSQDSF 46 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGS----CGGGCSEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchhcc----ccCCCceEEEecccc
Confidence 6899999999999999999765432110 001224667777643
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.67 E-value=0.0021 Score=58.90 Aligned_cols=23 Identities=48% Similarity=0.657 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 006442 453 TAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 453 v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
|+|+||+|||||||++.|+...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999987654
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.66 E-value=0.0021 Score=64.42 Aligned_cols=39 Identities=26% Similarity=0.383 Sum_probs=32.2
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEEC
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~ 484 (645)
-++.|.-+.|+|+.|||||||+++|++.++|..=-|++.
T Consensus 162 ~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiE 200 (323)
T d1g6oa_ 162 GIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE 200 (323)
T ss_dssp HHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred HHHhCCCEEEEeeccccchHHHHHHhhhcccccceeecc
Confidence 345667799999999999999999999998876556553
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.66 E-value=0.0025 Score=55.63 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
+++|+|++|+|||||++.|.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999853
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.66 E-value=0.0025 Score=55.68 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
++.|+|+.|||||||++.|.+-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999764
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.65 E-value=0.0018 Score=58.84 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=23.1
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 449 RGEKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 449 ~Ge~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
+|-+|.|+|+.||||||+.+.|+..+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998754
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.64 E-value=0.0096 Score=57.61 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=21.8
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q 006442 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
.-+.|.||.|+|||+|.++|++..
T Consensus 42 ~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 42 KGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcchhHHHHHHHHh
Confidence 448899999999999999999976
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.64 E-value=0.0029 Score=56.68 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
.++|+|+.|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.62 E-value=0.0029 Score=56.62 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
.|+|+|+.|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.60 E-value=0.0027 Score=57.85 Aligned_cols=26 Identities=12% Similarity=0.390 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 450 GEKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 450 Ge~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
...+.|+||+|+|||||++.|+...+
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCC
Confidence 45789999999999999999986543
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.60 E-value=0.0022 Score=58.68 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.4
Q ss_pred EEEECCCCccHHHHHHHHHcCCC
Q 006442 126 VGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
++|+||+|||||||++.|+...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 68999999999999999987654
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.57 E-value=0.0038 Score=57.02 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=24.5
Q ss_pred EECCcEEEEECCCCccHHHHHHHHHcC
Q 006442 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
+++|+++.|.||.|||||||+.-++..
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 789999999999999999999877753
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.57 E-value=0.0027 Score=58.16 Aligned_cols=25 Identities=32% Similarity=0.250 Sum_probs=21.8
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q 006442 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
..+++|+||.||||||+.+.|+-.+
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998643
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.53 E-value=0.0025 Score=57.48 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
.++|+|+.|+|||||++.|.|.-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999963
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.52 E-value=0.0029 Score=57.60 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=21.2
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q 006442 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
..+.|+||+|+|||||++.|....
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999988654
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.50 E-value=0.0033 Score=56.92 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
.+||+|..|+|||||++.|+|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.48 E-value=0.0023 Score=57.36 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
+++|||+.|+|||||++.|.|-..
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999998653
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.48 E-value=0.0032 Score=58.54 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
+|||.|+.|||||||.+.|...+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 589999999999999999977653
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.46 E-value=0.0033 Score=54.87 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=20.8
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
+++|+|+.|+|||||++.|.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999853
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.46 E-value=0.0033 Score=54.92 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=19.7
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
.++|+|+.|+|||||++.+++.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.46 E-value=0.0034 Score=55.31 Aligned_cols=25 Identities=44% Similarity=0.640 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 450 GEKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 450 Ge~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
|=+++|+|+.|+|||||++.|+|.-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999999863
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.44 E-value=0.0032 Score=57.80 Aligned_cols=22 Identities=41% Similarity=0.549 Sum_probs=19.5
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q 006442 126 VGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
++|+||+|||||||++.|+-..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999987654
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.44 E-value=0.0033 Score=55.36 Aligned_cols=25 Identities=44% Similarity=0.652 Sum_probs=22.1
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q 006442 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
|=.++|+|+.|+|||||++.|+|.-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999864
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.43 E-value=0.0021 Score=58.35 Aligned_cols=22 Identities=41% Similarity=0.733 Sum_probs=20.2
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q 006442 126 VGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
|||+|+.++|||||++.|+|..
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999998853
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.43 E-value=0.0033 Score=57.73 Aligned_cols=22 Identities=45% Similarity=0.726 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 006442 453 TAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 453 v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
|+|+||+|||||||.+.|+...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999997654
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.41 E-value=0.0033 Score=56.70 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
.|+|+|+.|+|||||++.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999853
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.41 E-value=0.0037 Score=56.32 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=21.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
+++|+|..|+|||||++.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.40 E-value=0.0035 Score=55.11 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
.++|||..|+|||||++.+.+-.
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998764
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.38 E-value=0.0039 Score=56.22 Aligned_cols=23 Identities=43% Similarity=0.684 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
+|+|+|..|+|||||++.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.38 E-value=0.0039 Score=55.91 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
+++|+|..|+|||||++.|+|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.37 E-value=0.018 Score=59.11 Aligned_cols=47 Identities=26% Similarity=0.280 Sum_probs=34.2
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHH
Q 006442 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRA 317 (645)
Q Consensus 267 RvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~ 317 (645)
--+|..+|=++||++++.|.. |+++.....+.- ..|.-|+-+-|--+
T Consensus 217 ~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~aa-~tGhlV~tTlHa~~ 263 (401)
T d1p9ra_ 217 ARGLRAILRQDPDVVMVGEIR---DLETAQIAVQAS-LTGHLVMSTLHTNT 263 (401)
T ss_dssp HHHHHHHGGGCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEECCSS
T ss_pred HHHHHHHHhhcCCEEEecCcC---ChHHHHHHHHHH-hcCCeEEEEeccCc
Confidence 345777888999999999987 667766655443 34888888878543
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.34 E-value=0.0041 Score=55.75 Aligned_cols=22 Identities=45% Similarity=0.646 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
+|+|+|..|+|||||++.|+|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.26 E-value=0.003 Score=58.00 Aligned_cols=27 Identities=37% Similarity=0.393 Sum_probs=23.9
Q ss_pred ECCcEEEEECCCCccHHHHHHHHHcCC
Q 006442 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
+++.++.|+||.||||||+.+.|+-.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998644
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.24 E-value=0.0043 Score=55.26 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.7
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q 006442 126 VGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
+.|+|+.||||||+.++|+-.+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999998754
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.23 E-value=0.0043 Score=58.44 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
+++|+|+.|||||||++.|....
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 58999999999999999997543
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.23 E-value=0.0031 Score=57.00 Aligned_cols=22 Identities=41% Similarity=0.620 Sum_probs=20.6
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q 006442 126 VGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
+||+|..|+|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999864
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.23 E-value=0.0028 Score=57.50 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
-|||+|+.++|||||++.|+|.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999874
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.17 E-value=0.0046 Score=54.75 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
+++|+|+.|||||||++.|.+-.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 68999999999999999998854
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.17 E-value=0.0047 Score=56.55 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=22.0
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q 006442 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
-.++.|+||.||||||+.+.|+-.+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3469999999999999999998755
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.17 E-value=0.0044 Score=56.97 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=21.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
.++|+|+.|||||||++.|.|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.15 E-value=0.0055 Score=55.80 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=23.8
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
++|-++.|+||.||||||+.+.|+.-+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999643
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.13 E-value=0.0034 Score=56.63 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 006442 453 TAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 453 v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
|||+|+.|+|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999853
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.12 E-value=0.0061 Score=53.93 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=21.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
.++|+|+.|+|||||++.|.|...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 478999999999999999998643
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.10 E-value=0.0046 Score=55.42 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=19.1
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
.+.|+|+.||||||+.+.|+-.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~ 25 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARA 25 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3668999999999999999853
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.10 E-value=0.0066 Score=55.31 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.9
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHc
Q 006442 447 IERGEKTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 447 i~~Ge~v~i~G~NGsGKSTLl~~l~g 472 (645)
|++|+.+.|.||+|||||||...++.
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999999999887765
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.09 E-value=0.0048 Score=56.70 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
+|+|+|+.|||||||++.|.+-.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998863
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.06 E-value=0.0054 Score=55.12 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=20.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
.+.|+||.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997644
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.06 E-value=0.0048 Score=55.43 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
++.|.|++||||||+.+.|+..+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 677899999999999999987653
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.05 E-value=0.0055 Score=55.90 Aligned_cols=23 Identities=39% Similarity=0.335 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
++.|+||.||||||+.+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998643
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.04 E-value=0.0041 Score=56.67 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
++.|+||.||||||+.+.|+-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998543
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.03 E-value=0.0054 Score=55.39 Aligned_cols=25 Identities=36% Similarity=0.318 Sum_probs=21.4
Q ss_pred ECCcEEEEECCCCccHHHHHHHHHc
Q 006442 121 KKGEKVGLVGVNGAGKTTQLRIIAG 145 (645)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~l~G 145 (645)
++-+++.++|+.||||||+.+.++-
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998853
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.96 E-value=0.0058 Score=54.51 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 006442 451 EKTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 451 e~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
=+++|+|..|||||||++.|.+-
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999999885
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.96 E-value=0.0058 Score=54.36 Aligned_cols=22 Identities=36% Similarity=0.377 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 006442 453 TAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 453 v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
+.|+|+.||||||+.+.|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998765
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.95 E-value=0.0053 Score=55.96 Aligned_cols=20 Identities=30% Similarity=0.587 Sum_probs=18.8
Q ss_pred EEEEECCCCccHHHHHHHHH
Q 006442 125 KVGLVGVNGAGKTTQLRIIA 144 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~ 144 (645)
++||.|+.||||||+++.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999986
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=94.94 E-value=0.0032 Score=56.56 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
+|+|+|+.++|||||++.|.+.-
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999998864
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.93 E-value=0.0048 Score=59.09 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=22.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
.+.|.||.|||||||.+.|++.+.
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 488999999999999999999764
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.90 E-value=0.0063 Score=55.81 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
+++++|..|||||||.+.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998643
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.89 E-value=0.006 Score=54.31 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=19.2
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q 006442 126 VGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
+.|+|+.||||||+.+.|+-.+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999998644
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.89 E-value=0.0059 Score=54.81 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
++.|.|++||||||+.+.|+..+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 577899999999999999987763
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.80 E-value=0.007 Score=54.70 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
++.|+||.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999654
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.77 E-value=0.0067 Score=54.05 Aligned_cols=23 Identities=48% Similarity=0.548 Sum_probs=20.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
.++|+|..|||||||++.|.|..
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999853
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.77 E-value=0.0066 Score=58.55 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
.++|+|++|+|||||++.|+|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 38999999999999999999964
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.77 E-value=0.0069 Score=55.25 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 450 GEKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 450 Ge~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
..+|.|+||.||||||+.+.|+..+
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999998754
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.75 E-value=0.0026 Score=56.10 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
+++|+|+.|+|||||++.|+|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.72 E-value=0.0053 Score=56.10 Aligned_cols=25 Identities=32% Similarity=0.247 Sum_probs=22.1
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q 006442 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
.-+++|-|+.||||||+++.|...+
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999998755
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.68 E-value=0.0069 Score=54.18 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 451 EKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 451 e~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
+.+.|+|+.||||||+.+.|+..+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 346799999999999999998654
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=94.68 E-value=0.0038 Score=56.04 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
.++|+|..++|||||++.|.|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999864
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.63 E-value=0.0059 Score=55.74 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 451 EKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 451 e~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
-+|+|-|+.||||||+++.|...+.
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3799999999999999999998763
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.62 E-value=0.0082 Score=53.85 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
+|.|+||.||||||+.+.|+..+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999997755
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.58 E-value=0.0087 Score=55.43 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=23.3
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q 006442 122 KGEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
+|.+++|-|+-||||||+++.|...+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998644
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.55 E-value=0.0082 Score=55.59 Aligned_cols=20 Identities=45% Similarity=0.609 Sum_probs=18.8
Q ss_pred EEEEECCCCccHHHHHHHHH
Q 006442 125 KVGLVGVNGAGKTTQLRIIA 144 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~ 144 (645)
++||.|+.||||||+++++.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999886
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.54 E-value=0.0082 Score=53.35 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
++.|+|+.||||||+.+.|+..+
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 36788999999999999998765
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.54 E-value=0.0087 Score=54.68 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 450 GEKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 450 Ge~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
-.++.|+||.||||||+.+.|+..+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3469999999999999999999876
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.54 E-value=0.0081 Score=54.04 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
.+.|+||.||||||+.+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999854
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.53 E-value=0.0033 Score=55.37 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
.++|+|..|+|||||++.|+|..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999853
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.51 E-value=0.007 Score=55.05 Aligned_cols=23 Identities=35% Similarity=0.332 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
++.|.||.||||||+.+.|+.-+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998665
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.51 E-value=0.15 Score=49.09 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=20.8
Q ss_pred CcEEEEECCCCccHHHHHHHHHcC
Q 006442 123 GEKVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
..+++|+|.-|.|||||.+.+...
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999998643
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.51 E-value=0.0082 Score=54.60 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
++||+|+.||||||+.+.|.-.
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999998653
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=94.49 E-value=0.0091 Score=55.22 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
+++|.||.||||||+.+.|+-.+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999998654
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.49 E-value=0.0088 Score=55.56 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
+++|-||.||||||+.+.|+-.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57888999999999999999754
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.46 E-value=0.0066 Score=60.13 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
+|||.|++||||||+.+.|..++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHh
Confidence 689999999999999999887763
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.46 E-value=0.0096 Score=53.61 Aligned_cols=23 Identities=43% Similarity=0.466 Sum_probs=20.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
.+.|+||.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998643
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.45 E-value=0.0095 Score=54.57 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
.|.++|..|||||||.+.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.45 E-value=0.0084 Score=57.75 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=21.2
Q ss_pred EEEECCCCccHHHHHHHHHcCCC
Q 006442 126 VGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
++|+|..|+|||||++.|+|...
T Consensus 35 I~LvG~tg~GKSSliN~ilg~~~ 57 (257)
T d1h65a_ 35 ILVMGKGGVGKSSTVNSIIGERV 57 (257)
T ss_dssp EEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCc
Confidence 89999999999999999999753
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.43 E-value=0.0092 Score=53.25 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
+++|+|+.|+|||||++.+.+-
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 5899999999999999998753
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.41 E-value=0.017 Score=54.60 Aligned_cols=41 Identities=17% Similarity=0.116 Sum_probs=33.4
Q ss_pred CCeEEeeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHH
Q 006442 562 STLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFV 603 (645)
Q Consensus 562 p~lLlLDEPt~~LD~~s~~~l~~~l~~~~--~tvi~vsHd~~~i 603 (645)
.+++|+||.=. |...+...|.+.+++.. ..+|++|++.+-+
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i 158 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 158 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCCCCeEEEEEcCCcccc
Confidence 46999999954 88889999999998864 3789999887654
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.40 E-value=0.0095 Score=55.47 Aligned_cols=27 Identities=37% Similarity=0.513 Sum_probs=23.8
Q ss_pred ECCcEEEEECCCCccHHHHHHHHHcCC
Q 006442 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
++|-+++|-|+-||||||+.+.|...+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999987654
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.39 E-value=0.0094 Score=53.07 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 006442 452 KTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g 472 (645)
+++++|+.|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 489999999999999998865
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.36 E-value=0.009 Score=53.95 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.9
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q 006442 126 VGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G~ 146 (645)
+||+|...+|||||++.|+|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999974
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.35 E-value=0.011 Score=55.00 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=21.6
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 449 RGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 449 ~Ge~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
++.+++++||+|+||||.+-=|+..+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 567899999999999998766665543
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=94.33 E-value=0.011 Score=52.59 Aligned_cols=29 Identities=38% Similarity=0.241 Sum_probs=25.4
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHcCC
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
..++|.+++|.|+=|||||||.|.++.-+
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence 34689999999999999999999988654
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.32 E-value=0.01 Score=52.55 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
+++|+|+.|+|||||++.+.+-
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999988653
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.32 E-value=0.011 Score=53.42 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
+|.|+||.||||||+.+.|+.-+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998765
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.27 E-value=0.0085 Score=54.76 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=24.1
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
..+.++.|+||.||||||+.+.|+..+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999998865
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.26 E-value=0.011 Score=53.23 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
++.|+||.||||||+.+.|+-.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47799999999999999998643
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.23 E-value=0.0096 Score=54.81 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=20.1
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
-++|+|+.|+|||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.22 E-value=0.007 Score=56.91 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=23.8
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCC
Q 006442 122 KGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
++.+++|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998653
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.19 E-value=0.011 Score=55.02 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=22.7
Q ss_pred ECCcEEEEECCCCccHHHHHHHHHc
Q 006442 121 KKGEKVGLVGVNGAGKTTQLRIIAG 145 (645)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~l~G 145 (645)
++|.++-|.|.+|||||||.+.|.-
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999999999874
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.18 E-value=0.012 Score=53.52 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
+|.|+||.||||||..+.|+..+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998754
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.17 E-value=0.0097 Score=56.82 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=25.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECc
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g 485 (645)
-+.|.||.|||||||.+.|++.+.. +-+.++.
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~ 65 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN 65 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhc--ceEEEec
Confidence 4779999999999999999998743 2344443
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.17 E-value=0.012 Score=54.94 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=23.7
Q ss_pred EECCcEEEEECCCCccHHHHHHHHHc
Q 006442 120 VKKGEKVGLVGVNGAGKTTQLRIIAG 145 (645)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~l~G 145 (645)
+++|+++.|.|+.|||||||+.-++-
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 89999999999999999999987653
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.17 E-value=0.011 Score=52.49 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
+++|+|+.|+|||||++.+.+-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988763
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.15 E-value=0.012 Score=54.69 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=24.3
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
++|-+|+|-|+-||||||+.+.|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999877553
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.12 E-value=0.012 Score=53.65 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.0
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q 006442 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
=.+.|+||.||||||+.+.|+-.+
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred eeEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999643
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.12 E-value=0.013 Score=54.49 Aligned_cols=26 Identities=46% Similarity=0.590 Sum_probs=21.4
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q 006442 122 KGEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
++.+++++||+|+||||.+-=|+-.+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999876666543
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.11 E-value=0.012 Score=52.74 Aligned_cols=22 Identities=41% Similarity=0.581 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
+++|+|+.|+|||||++.+.+-
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999987663
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.05 E-value=0.012 Score=51.93 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=19.2
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
.++++|+.|+|||||++.+.+-
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988654
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.04 E-value=0.013 Score=54.67 Aligned_cols=27 Identities=30% Similarity=0.475 Sum_probs=24.6
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCC
Q 006442 122 KGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
+|.+++|-|+-||||||+++.|.-.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 699999999999999999999987654
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.03 E-value=0.0082 Score=56.37 Aligned_cols=27 Identities=33% Similarity=0.431 Sum_probs=24.2
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 449 RGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 449 ~Ge~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
++.+|+|-|+-||||||+++.|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 357899999999999999999998774
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.03 E-value=0.014 Score=53.99 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.4
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 449 RGEKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 449 ~Ge~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
+|..|+|-|+-||||||+++.|...+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998654
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.02 E-value=0.011 Score=58.33 Aligned_cols=41 Identities=12% Similarity=0.238 Sum_probs=30.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCcc
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~ 172 (645)
++||.|++||||||+.+.|..++.-.. ...++..++++...
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~-------~~~~v~~Is~D~F~ 122 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWP-------EHRRVELITTDGFL 122 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTST-------TCCCEEEEEGGGGB
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhc-------CCCceEEEeeeeeE
Confidence 689999999999999999987664211 12356777777554
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.01 E-value=0.013 Score=54.42 Aligned_cols=21 Identities=38% Similarity=0.447 Sum_probs=19.3
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q 006442 125 KVGLVGVNGAGKTTQLRIIAG 145 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G 145 (645)
++||+|..||||||.++++..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 689999999999999999863
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.95 E-value=0.012 Score=55.49 Aligned_cols=25 Identities=44% Similarity=0.517 Sum_probs=22.2
Q ss_pred EEEECCCCccHHHHHHHHHcCCCCC
Q 006442 126 VGLVGVNGAGKTTQLRIIAGQEEPD 150 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G~~~p~ 150 (645)
+.+.||.|+||||+.++|+..+...
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCcHHHHHHHHHhccCCC
Confidence 6899999999999999999876544
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.94 E-value=0.012 Score=52.46 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
+++|+|+.|+|||||++.|.+-
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999774
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.92 E-value=0.015 Score=51.63 Aligned_cols=21 Identities=33% Similarity=0.629 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 006442 452 KTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g 472 (645)
+++|+|..|+|||||++.+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998776
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.92 E-value=0.013 Score=51.90 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
+++++|..|+|||||++.+++-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5889999999999999988764
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.91 E-value=0.025 Score=50.10 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=18.9
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q 006442 125 KVGLVGVNGAGKTTQLRIIAG 145 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G 145 (645)
.++|+|..|+|||||++.+++
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998776
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.90 E-value=0.014 Score=52.46 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
++.|+||.||||||..+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998654
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.90 E-value=0.014 Score=51.61 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 006442 452 KTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g 472 (645)
+++++|+.|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999987764
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.89 E-value=0.018 Score=51.28 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=19.1
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q 006442 126 VGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G~ 146 (645)
++|+|+.|+|||||++.+.+-
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999998764
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=93.89 E-value=0.26 Score=47.19 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc
Q 006442 450 GEKTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 450 Ge~v~i~G~NGsGKSTLl~~l~g 472 (645)
..+++|+|.-|.|||||.+.++.
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999865
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.88 E-value=0.014 Score=51.91 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=18.9
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q 006442 126 VGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G~ 146 (645)
++++|+.|+|||||++.+.+-
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 889999999999999988753
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.86 E-value=0.013 Score=54.77 Aligned_cols=22 Identities=32% Similarity=0.359 Sum_probs=20.2
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q 006442 126 VGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
+.|.||+|+||||++++|+..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6899999999999999999765
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.85 E-value=0.014 Score=53.63 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
.|+|+|+.|+|||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.84 E-value=0.014 Score=52.06 Aligned_cols=22 Identities=45% Similarity=0.542 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
+++|+|+.|+|||||++.+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 5889999999999999987654
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.80 E-value=0.015 Score=52.49 Aligned_cols=21 Identities=33% Similarity=0.678 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 006442 452 KTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g 472 (645)
+++|+|..|||||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998775
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.76 E-value=0.015 Score=53.74 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 006442 452 KTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g 472 (645)
++||+|..||||||+.+.+..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.74 E-value=0.014 Score=51.84 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 006442 452 KTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g 472 (645)
+++|+|..|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999997765
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.74 E-value=0.016 Score=53.93 Aligned_cols=42 Identities=24% Similarity=0.156 Sum_probs=30.7
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCCC--eeEEEECceecc
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPR--GGEVLLGEHNVL 489 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~--~G~i~~~g~~~~ 489 (645)
++|-++-|+|.+|||||||.+.|...+... .-.+.++|..++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR 65 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 65 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHH
Confidence 467789999999999999999997543211 135677876543
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=93.74 E-value=0.015 Score=52.48 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 006442 453 TAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 453 v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
|||+|+..+|||||++.|.+.-
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 8999999999999999999753
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.74 E-value=0.017 Score=52.12 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
+++|+|+.|+|||||++.+.+-
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4899999999999999998864
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.73 E-value=0.015 Score=51.95 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
.++|+|+.|+|||||++.+.+-
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3889999999999999987664
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.71 E-value=0.014 Score=58.35 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 451 EKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 451 e~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
-+|||+|+.|+|||||+..|.+.+
T Consensus 55 ~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 55 LRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHH
Confidence 379999999999999999998543
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.70 E-value=0.019 Score=53.94 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=24.2
Q ss_pred EECCcEEEEECCCCccHHHHHHHHHcC
Q 006442 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
+++|.++.|.|++|||||||+.-++-.
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 789999999999999999999877643
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.70 E-value=0.015 Score=51.52 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 006442 452 KTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g 472 (645)
+++|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 799999999999999999764
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.69 E-value=0.018 Score=54.50 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=20.7
Q ss_pred EEEECCCCccHHHHHHHHHcCCC
Q 006442 126 VGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
+.|.||+|+||||++++|+..+.
T Consensus 55 lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 55 AMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999998653
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.68 E-value=0.017 Score=51.89 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
++.|+||.||||||+.+.|+.-+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999997655
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.67 E-value=0.019 Score=53.19 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=22.2
Q ss_pred EECCcEEEEECCCCccHHHHHHHHH
Q 006442 120 VKKGEKVGLVGVNGAGKTTQLRIIA 144 (645)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~l~ 144 (645)
+++|+++.|.|++|+|||||+.-++
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 8899999999999999999985443
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.62 E-value=0.017 Score=51.13 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
+++|+|+.|+|||||++.+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6899999999999999988764
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.60 E-value=0.014 Score=52.01 Aligned_cols=22 Identities=41% Similarity=0.696 Sum_probs=19.8
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
.++++|+.|+|||||++.+.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999774
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=93.60 E-value=0.017 Score=53.54 Aligned_cols=24 Identities=42% Similarity=0.448 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
+|+|-||.||||||+-+.|+.-+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578899999999999999987653
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=93.60 E-value=0.017 Score=53.19 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
+|+|.||.||||||+-+.|+.-+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999987653
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.59 E-value=0.019 Score=51.03 Aligned_cols=23 Identities=39% Similarity=0.733 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
+++|+|..|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 58999999999999999998864
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.59 E-value=0.018 Score=51.81 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
++.|+||-||||||+.+.|+-.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998764
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.59 E-value=0.02 Score=50.58 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
.++|+|+.|+|||||++.+.+-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999988764
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.59 E-value=0.015 Score=57.99 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=22.0
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q 006442 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
.-++||+|+.|||||||+..|...+
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 5579999999999999999998644
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.54 E-value=0.019 Score=53.53 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=27.1
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEE
Q 006442 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (645)
Q Consensus 449 ~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i 481 (645)
+|..|+|-|+-||||||++++|...+.. .|.+
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~-~~~~ 33 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL 33 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT-SEEE
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh-CCEE
Confidence 6899999999999999999999977764 3443
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.52 E-value=0.017 Score=54.10 Aligned_cols=50 Identities=16% Similarity=0.251 Sum_probs=31.1
Q ss_pred CCCeEEeeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHH-HhhCCEEE
Q 006442 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFV-KQIVNRVV 611 (645)
Q Consensus 561 ~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~--~tvi~vsHd~~~i-~~~~d~v~ 611 (645)
++.++++||- ..+-......+...+.... ..+|++++....+ ..+.+|..
T Consensus 109 ~~~iilide~-d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~~l~sR~~ 161 (231)
T d1iqpa2 109 SFKIIFLDEA-DALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 161 (231)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEE
T ss_pred CceEEeehhh-hhcchhHHHHHhhhcccCCcceEEEeccCChhhchHhHhCccc
Confidence 5779999995 3445556667777777654 3667777766543 22334443
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.50 E-value=0.017 Score=51.43 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 006442 452 KTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g 472 (645)
+++|+|..|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999876
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.49 E-value=0.013 Score=54.65 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=19.3
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcC
Q 006442 449 RGEKTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 449 ~Ge~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
+.-+++++||||+||||.+-=|+-.
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999976655543
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.48 E-value=0.02 Score=53.32 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=24.0
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHc
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g 472 (645)
-|++|+.+-|.|+.|||||||...++-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 388999999999999999999987753
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.48 E-value=0.017 Score=50.87 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 006442 452 KTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g 472 (645)
+++|+|..|+|||||++.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999875
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.48 E-value=0.018 Score=50.92 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 006442 452 KTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g 472 (645)
+++|+|..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998875
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.47 E-value=0.018 Score=50.90 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 006442 452 KTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g 472 (645)
+++|+|..|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998765
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.46 E-value=0.019 Score=58.95 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=21.1
Q ss_pred EEEECCCCccHHHHHHHHHcCCC
Q 006442 126 VGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
++|+|..|+|||||++.|.|.-.
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEECCCCCCHHHHHHHHhCCCc
Confidence 79999999999999999999643
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=93.43 E-value=0.02 Score=52.24 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 451 EKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 451 e~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
=++.|+||.||||||+-+.|+--+
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred eeEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999999998765
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.42 E-value=0.02 Score=53.27 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=23.9
Q ss_pred EECCcEEEEECCCCccHHHHHHHHHc
Q 006442 120 VKKGEKVGLVGVNGAGKTTQLRIIAG 145 (645)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~l~G 145 (645)
+++|+++.|.|+.|+|||||+.-++-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 89999999999999999999887763
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.38 E-value=0.025 Score=49.79 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=18.1
Q ss_pred EEEECCCCccHHHHHHHHHc
Q 006442 126 VGLVGVNGAGKTTQLRIIAG 145 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G 145 (645)
++|+|+.|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987764
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.36 E-value=0.021 Score=53.66 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.6
Q ss_pred EECCcEEEEECCCCccHHHHHHHHH
Q 006442 120 VKKGEKVGLVGVNGAGKTTQLRIIA 144 (645)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~l~ 144 (645)
+++|+++.|.|+.|||||||.--++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 7999999999999999999987553
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.35 E-value=0.022 Score=50.20 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.4
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q 006442 126 VGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
++++|..|+|||||++.+++..
T Consensus 5 i~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7899999999999999887643
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.35 E-value=0.02 Score=58.72 Aligned_cols=23 Identities=30% Similarity=0.674 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
.|||+|+.|+|||||++.|.|.-
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999999853
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.33 E-value=0.01 Score=57.91 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=25.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCc
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~ 171 (645)
++||.|++||||||+.+.|...+.. .+.+...++++..
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~---------~~v~~~iI~~Dsf 43 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRR---------EGVKAVSIEGDAF 43 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHH---------HTCCEEEEEGGGG
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhh---------cCCCeEEEeCCCC
Confidence 7999999999999999998765432 1234567778753
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.31 E-value=0.019 Score=53.71 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=20.0
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q 006442 126 VGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
+.|.||+|+||||++++|+..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6899999999999999999764
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.30 E-value=0.019 Score=51.41 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
++.|+|..|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6899999999999999887754
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.30 E-value=0.022 Score=51.29 Aligned_cols=21 Identities=33% Similarity=0.351 Sum_probs=19.3
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q 006442 126 VGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G~ 146 (645)
++|+|+.|+|||||++.+.+-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999998864
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.28 E-value=0.019 Score=53.94 Aligned_cols=26 Identities=15% Similarity=0.088 Sum_probs=23.9
Q ss_pred EECCcEEEEECCCCccHHHHHHHHHc
Q 006442 120 VKKGEKVGLVGVNGAGKTTQLRIIAG 145 (645)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~l~G 145 (645)
|++|.++.|.|++|||||||...++.
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999999987763
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.27 E-value=0.027 Score=50.13 Aligned_cols=23 Identities=39% Similarity=0.768 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
++.|+|..|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 58899999999999999998754
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.26 E-value=0.02 Score=50.53 Aligned_cols=22 Identities=45% Similarity=0.528 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
+++|+|..|+|||||++.+.+-
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999887753
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.26 E-value=0.021 Score=53.89 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
.+.|.||+|+||||++++|+..+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 367999999999999999998764
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.24 E-value=0.021 Score=50.91 Aligned_cols=21 Identities=33% Similarity=0.629 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 006442 452 KTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g 472 (645)
+++|+|+.|+|||||++.+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999977764
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.24 E-value=0.02 Score=53.85 Aligned_cols=41 Identities=22% Similarity=0.292 Sum_probs=27.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHH
Q 006442 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 319 (645)
Q Consensus 277 ~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l 319 (645)
+--||++| ...|+.+.+.+.+. ++...+..+|++-..++.+
T Consensus 95 D~~ilVvd-a~~g~~~~~~~~~~-~~~~~~~p~iivlNK~D~~ 135 (227)
T d1g7sa4 95 DLAILIVD-INEGFKPQTQEALN-ILRMYRTPFVVAANKIDRI 135 (227)
T ss_dssp SEEEEEEE-TTTCCCHHHHHHHH-HHHHTTCCEEEEEECGGGS
T ss_pred ceEEEEEe-cccCcccchhHHHH-HhhcCCCeEEEEEECccCC
Confidence 44467777 77888888765554 4545567777777776654
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.23 E-value=0.021 Score=50.91 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=18.9
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q 006442 126 VGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G~ 146 (645)
++|||+.|+|||||++.+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999987754
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.23 E-value=0.021 Score=52.21 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
+++|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998654
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.18 E-value=0.021 Score=53.03 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 450 GEKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 450 Ge~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
..++.++||||+||||.+-=|+..+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999877776544
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.16 E-value=0.026 Score=52.15 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=22.2
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHH
Q 006442 447 IERGEKTAIIGPNGCGKSTLLKLIM 471 (645)
Q Consensus 447 i~~Ge~v~i~G~NGsGKSTLl~~l~ 471 (645)
|++|+.+.|.|++|+|||||..-++
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 8899999999999999999975443
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.15 E-value=0.023 Score=52.82 Aligned_cols=26 Identities=35% Similarity=0.284 Sum_probs=21.0
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q 006442 122 KGEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
...++.++||+|+||||.+-=|+-.+
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999999887777544
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.14 E-value=0.02 Score=53.41 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 006442 453 TAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 453 v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
+.|.||+|+||||++++|+..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6799999999999999999864
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.14 E-value=0.022 Score=50.05 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 006442 452 KTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g 472 (645)
+++|+|..|+|||||++.+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998874
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.11 E-value=0.022 Score=51.22 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=18.7
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q 006442 125 KVGLVGVNGAGKTTQLRIIAG 145 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G 145 (645)
.++|+|..|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998775
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.11 E-value=0.022 Score=53.90 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=21.7
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q 006442 122 KGEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
.+.++.|.||.|+|||||++.++-..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 34678999999999999999887543
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.09 E-value=0.023 Score=53.78 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=22.7
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 449 RGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 449 ~Ge~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
.+..+.|.||.|+|||||++.++....
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence 456899999999999999998876543
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.07 E-value=0.025 Score=50.11 Aligned_cols=23 Identities=48% Similarity=0.703 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
.++|+|..|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 37899999999999999998864
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.07 E-value=0.021 Score=50.74 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=18.7
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q 006442 125 KVGLVGVNGAGKTTQLRIIAG 145 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G 145 (645)
.++|+|..|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999997765
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.05 E-value=0.016 Score=54.17 Aligned_cols=39 Identities=28% Similarity=0.320 Sum_probs=26.5
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEecc
Q 006442 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQE 169 (645)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~ 169 (645)
+-.++++|||+|+||||.+-=|+-.+. . .+.+|+++.=+
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~~-~--------~~~kV~lit~D 48 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMFV-D--------EGKSVVLAAAD 48 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH-H--------TTCCEEEEEEC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-H--------CCCceEEEeec
Confidence 445789999999999998766664332 1 12357777654
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.03 E-value=0.015 Score=52.26 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
+++++|+.|+|||||++.+.+-
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999988653
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.02 E-value=0.031 Score=49.74 Aligned_cols=24 Identities=42% Similarity=0.679 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
.++|+|..|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCcC
Confidence 378999999999999999988653
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.00 E-value=0.021 Score=53.64 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=22.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCe
Q 006442 453 TAIIGPNGCGKSTLLKLIMGLEKPRG 478 (645)
Q Consensus 453 v~i~G~NGsGKSTLl~~l~g~~~p~~ 478 (645)
+-+.||.|+||||+.++|+..+....
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~~ 63 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTNI 63 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred EEEECCCCCcHHHHHHHHHhccCCCc
Confidence 67999999999999999998765543
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.97 E-value=0.031 Score=49.29 Aligned_cols=22 Identities=27% Similarity=0.361 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
.++|+|..|+|||||++.+++-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999988764
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.93 E-value=0.023 Score=50.61 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 006442 452 KTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g 472 (645)
+++|+|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998765
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.93 E-value=0.028 Score=49.56 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=19.2
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q 006442 125 KVGLVGVNGAGKTTQLRIIAG 145 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G 145 (645)
.++|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999765
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.92 E-value=0.018 Score=53.57 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 451 EKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 451 e~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
.+++++||||+||||.+-=|+..+.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999997766665443
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.92 E-value=0.024 Score=50.64 Aligned_cols=21 Identities=48% Similarity=0.646 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 006442 452 KTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g 472 (645)
+++++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998876
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.92 E-value=0.013 Score=57.22 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
+|||.|++||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 799999999999999998877653
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.91 E-value=0.025 Score=50.13 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
+++|+|..|+|||||++.+.+-
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6899999999999999977653
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=92.91 E-value=0.025 Score=50.02 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=25.7
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 447 i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
.++|.++.|.|+=|||||||.|.++.-+-
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 46899999999999999999999987663
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=92.86 E-value=0.023 Score=53.45 Aligned_cols=23 Identities=39% Similarity=0.430 Sum_probs=20.4
Q ss_pred EEEECCCCccHHHHHHHHHcCCC
Q 006442 126 VGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
+.+.||.|+||||+.++|++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56999999999999999998653
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.84 E-value=0.025 Score=50.84 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 006442 452 KTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g 472 (645)
+++|+|..|+|||||++.+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999988765
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.81 E-value=0.027 Score=51.51 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
+|+|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998654
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=92.80 E-value=0.027 Score=52.07 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
++||+|..||||||..+.+..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHC
Confidence 6899999999999999998654
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.79 E-value=0.032 Score=52.23 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=23.9
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcC
Q 006442 447 IERGEKTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 447 i~~Ge~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
|++|..+.|.|++|||||||..-++--
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 789999999999999999998777543
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.78 E-value=0.031 Score=49.09 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
.++|+|..|+|||||++.+.+-
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999988763
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.72 E-value=0.034 Score=48.95 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=18.9
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q 006442 126 VGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G~ 146 (645)
++|+|..|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999887754
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.72 E-value=0.028 Score=49.68 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=18.9
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q 006442 125 KVGLVGVNGAGKTTQLRIIAG 145 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G 145 (645)
.++|+|..|+|||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998875
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.68 E-value=0.028 Score=54.78 Aligned_cols=22 Identities=23% Similarity=0.227 Sum_probs=19.2
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
++||-|+.|||||||.+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 6899999999999999877543
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.68 E-value=0.028 Score=49.61 Aligned_cols=21 Identities=33% Similarity=0.330 Sum_probs=18.7
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q 006442 125 KVGLVGVNGAGKTTQLRIIAG 145 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G 145 (645)
.++|+|..|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998775
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.68 E-value=0.024 Score=55.94 Aligned_cols=23 Identities=30% Similarity=0.654 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
-+.++||+|||||+|.|+|+..+
T Consensus 51 ~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 51 NILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhhcc
Confidence 35699999999999999999875
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.65 E-value=0.033 Score=49.38 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
.++|+|..|+|||||++.+.+-
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3889999999999999988863
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.63 E-value=0.02 Score=53.32 Aligned_cols=37 Identities=32% Similarity=0.425 Sum_probs=25.9
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEecc
Q 006442 124 EKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQE 169 (645)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~ 169 (645)
.++++|||+|+||||.+-=|+-.+. .. +.+|+++.=+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~-~~--------g~kV~lit~D 46 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE-QQ--------GKSVMLAAGD 46 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH-TT--------TCCEEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH-HC--------CCcEEEEecc
Confidence 5799999999999998776665443 22 2356776544
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.62 E-value=0.029 Score=49.69 Aligned_cols=21 Identities=43% Similarity=0.612 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 006442 452 KTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g 472 (645)
+++|+|+.|+|||||++-+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998875
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.62 E-value=0.028 Score=49.74 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 006442 452 KTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g 472 (645)
+++++|..|+|||||++.+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999999884
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.59 E-value=0.027 Score=50.05 Aligned_cols=21 Identities=43% Similarity=0.629 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 006442 452 KTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g 472 (645)
+++++|..|+|||||++.+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998864
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.57 E-value=0.023 Score=50.50 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
++.|+|+.|+|||||++.+.+-..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~~ 37 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQS 37 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 588999999999999999976543
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.56 E-value=0.027 Score=51.23 Aligned_cols=21 Identities=43% Similarity=0.566 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 006442 452 KTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g 472 (645)
+++|+|+.|+|||||++.+.+
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhh
Confidence 389999999999999998775
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.54 E-value=0.03 Score=49.13 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=18.3
Q ss_pred EEEECCCCccHHHHHHHHHc
Q 006442 126 VGLVGVNGAGKTTQLRIIAG 145 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G 145 (645)
++|+|..|+|||||++.+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998874
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=92.54 E-value=0.033 Score=50.70 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.8
Q ss_pred EEEECCCCccHHHHHHHHHcCCC
Q 006442 126 VGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
+||+|...+|||||++.|+|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEeccCCcHHHHHHHHHhhhh
Confidence 79999999999999999998643
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.53 E-value=0.026 Score=55.71 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.0
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q 006442 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
.-+.++||.|||||+|.|+|+...
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhhcc
Confidence 346799999999999999999864
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.46 E-value=0.028 Score=50.19 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
.++|+|..|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5789999999999999887754
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.45 E-value=0.034 Score=52.09 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=22.4
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHH
Q 006442 447 IERGEKTAIIGPNGCGKSTLLKLIM 471 (645)
Q Consensus 447 i~~Ge~v~i~G~NGsGKSTLl~~l~ 471 (645)
+++|+.+.|.|+.|||||||..-++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 7899999999999999999977553
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.42 E-value=0.02 Score=50.98 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 006442 452 KTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g 472 (645)
+++|+|+.|+|||||++.+++
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987755
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=92.39 E-value=0.033 Score=53.48 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=23.9
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHc
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g 472 (645)
-+.+|+.+.|.|++|+|||||+.-|+-
T Consensus 31 G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 31 GARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp SBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 378999999999999999999877763
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.39 E-value=0.036 Score=51.49 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=23.6
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHc
Q 006442 447 IERGEKTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 447 i~~Ge~v~i~G~NGsGKSTLl~~l~g 472 (645)
+++|+.+.|.|+.|+|||||..-++-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 88999999999999999999877753
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.38 E-value=0.019 Score=51.50 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=19.3
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
.++++|+.|+|||||++.+.+.
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998654
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.37 E-value=0.032 Score=49.55 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=17.8
Q ss_pred EEEECCCCccHHHHHHHHHc
Q 006442 126 VGLVGVNGAGKTTQLRIIAG 145 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G 145 (645)
++|+|+.|+|||||++.+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999977654
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.36 E-value=0.032 Score=52.27 Aligned_cols=27 Identities=26% Similarity=0.199 Sum_probs=24.1
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHc
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g 472 (645)
-|++|..+.|.|++|||||||...++.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999999887763
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.35 E-value=0.062 Score=48.36 Aligned_cols=32 Identities=31% Similarity=0.300 Sum_probs=25.3
Q ss_pred eeeeeeEEEECCcEEEEECCCCccHHHHHHHHH
Q 006442 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144 (645)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~ 144 (645)
.++..-+.+ .|.-+.|.|++|+|||||...+.
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 455545555 67889999999999999997775
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=92.34 E-value=0.036 Score=53.17 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=21.4
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q 006442 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
.-+.+.||.|||||+|.++|+..+
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEeeCCCCCCccHHHHHHHHHc
Confidence 347899999999999999999865
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.34 E-value=0.032 Score=49.18 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
+++|+|..|+|||||++.+..-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999987653
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.34 E-value=0.028 Score=52.30 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=15.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 450 GEKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 450 Ge~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
..+++++||+|+||||.+-=|+..+
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~~ 36 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYFY 36 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999876666544
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.30 E-value=0.033 Score=49.30 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 006442 452 KTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g 472 (645)
+++|+|+.|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999997654
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=92.29 E-value=0.034 Score=54.15 Aligned_cols=30 Identities=33% Similarity=0.479 Sum_probs=27.3
Q ss_pred EEEecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 445 l~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
+.|-.|++.+|+|+.|+|||||+..|+.-.
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 678899999999999999999999998743
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.25 E-value=0.032 Score=52.27 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
+|||+|...+|||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 5999999999999999999874
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.24 E-value=0.034 Score=49.25 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 006442 452 KTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g 472 (645)
++.++|..|+|||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998875
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.21 E-value=0.03 Score=53.33 Aligned_cols=23 Identities=35% Similarity=0.287 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
-+.|.||.|||||+|.++|+...
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhcc
Confidence 47899999999999999999864
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=92.15 E-value=0.031 Score=52.38 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 006442 453 TAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 453 v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
+-+.||.|+||||+.++|++.+
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4699999999999999999865
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.15 E-value=0.045 Score=48.78 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=19.2
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q 006442 126 VGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G~ 146 (645)
++|+|..|+|||||++.+.+-
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=92.13 E-value=0.033 Score=54.21 Aligned_cols=30 Identities=30% Similarity=0.282 Sum_probs=27.1
Q ss_pred EEEECCcEEEEECCCCccHHHHHHHHHcCC
Q 006442 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 118 l~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
+.|-+|++.+|+|+.|+|||||+..|+--.
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 688999999999999999999999988643
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=92.09 E-value=0.036 Score=49.05 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 006442 452 KTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g 472 (645)
+++|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998764
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.04 E-value=0.069 Score=48.02 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=25.0
Q ss_pred eeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHc
Q 006442 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 440 l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g 472 (645)
++...+.+ .|.=+.|+|++|+|||||...|..
T Consensus 6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 44444555 677899999999999999877764
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=91.99 E-value=0.037 Score=54.91 Aligned_cols=24 Identities=33% Similarity=0.649 Sum_probs=21.2
Q ss_pred CcEEEEECCCCccHHHHHHHHHcC
Q 006442 123 GEKVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
.-++||.|+.|+|||||+..|...
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHH
Confidence 457999999999999999998754
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=91.99 E-value=0.032 Score=51.92 Aligned_cols=39 Identities=26% Similarity=0.331 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEecc
Q 006442 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQE 169 (645)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~ 169 (645)
...++++|||+|+||||.+-=|+-.+. . ...+|+++.=+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~-~--------~g~kV~lit~D 49 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK-K--------KGFKVGLVGAD 49 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH-H--------TTCCEEEEECC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-H--------CCCceEEEEee
Confidence 346799999999999998766664432 1 12357777654
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.98 E-value=0.035 Score=49.37 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.2
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
.++|+|..|+|||||++-+.+-
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999987653
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.94 E-value=0.025 Score=50.33 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=9.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 006442 452 KTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g 472 (645)
+++|+|..|+|||||++.+++
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987765
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.93 E-value=0.1 Score=47.65 Aligned_cols=106 Identities=12% Similarity=0.167 Sum_probs=67.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhh
Q 006442 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGR 529 (645)
Q Consensus 450 Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~ 529 (645)
+-.+.+.||+|+||||+.+.++..+.-..- . .+.++. +.++ ......++++++.+.
T Consensus 15 ~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~-----~---h~D~~~------i~~~----------~~~I~Id~IR~i~~~ 70 (198)
T d2gnoa2 15 GISILINGEDLSYPREVSLELPEYVEKFPP-----K---ASDVLE------IDPE----------GENIGIDDIRTIKDF 70 (198)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCC-----C---TTTEEE------ECCS----------SSCBCHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHhcccc-----C---CCCEEE------EeCC----------cCCCCHHHHHHHHHH
Confidence 446789999999999999998875411000 0 000000 0010 112245667776665
Q ss_pred cCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHH
Q 006442 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFV 603 (645)
Q Consensus 530 ~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~--~tvi~vsHd~~~i 603 (645)
+...+ . ..+.+|+|+||+ -.|...+...|.+.|++.. ..+|++|++.+-+
T Consensus 71 ~~~~~---------~--------------~~~~KviIId~a-d~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~l 122 (198)
T d2gnoa2 71 LNYSP---------E--------------LYTRKYVIVHDC-ERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYL 122 (198)
T ss_dssp HTSCC---------S--------------SSSSEEEEETTG-GGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGS
T ss_pred HhhCc---------c--------------cCCCEEEEEeCc-cccchhhhhHHHHHHhCCCCCceeeeccCChhhC
Confidence 44321 1 123689999996 5688999999999999874 3788999997743
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.90 E-value=0.039 Score=51.39 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=23.5
Q ss_pred EEEEECCCCccHHHHHHHH-HcCCCCCcc
Q 006442 125 KVGLVGVNGAGKTTQLRII-AGQEEPDSG 152 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l-~G~~~p~~G 152 (645)
.+.|+|..|+|||||++-+ .+...|+-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 5789999999999999976 456667777
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.89 E-value=0.037 Score=51.39 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.5
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q 006442 126 VGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
+.|.||.|+||||++++++..+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHH
Confidence 5789999999999999998654
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.88 E-value=0.05 Score=47.96 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.1
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
.++|+|..|+|||||++.+.+-
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999977653
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.85 E-value=0.041 Score=48.64 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
.++|||+.|+|||||++-+.+-
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999988853
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.83 E-value=0.041 Score=53.55 Aligned_cols=22 Identities=32% Similarity=0.298 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
+|||.|+.|||||||-..|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 6899999999999999877544
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.83 E-value=0.041 Score=49.54 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 006442 452 KTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g 472 (645)
+++|+|..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 589999999999999988764
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.82 E-value=0.042 Score=49.18 Aligned_cols=29 Identities=28% Similarity=0.423 Sum_probs=24.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCeeE
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~~p~~G~ 480 (645)
++.|+|..|+|||||++-+....-|+.|.
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~ 32 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGI 32 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccE
Confidence 68999999999999999987766676664
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=91.81 E-value=0.025 Score=50.32 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
.+.|+|+.|+|||||++.+.+-..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~~ 37 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQS 37 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999986543
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=91.78 E-value=0.029 Score=57.51 Aligned_cols=28 Identities=29% Similarity=0.284 Sum_probs=24.3
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
.++..+.|.||.||||||++..+...+.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~ 183 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELN 183 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence 3567899999999999999999988654
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.78 E-value=0.047 Score=49.49 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=18.9
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q 006442 126 VGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G~ 146 (645)
++|+|+.|+|||||++.+.+-
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 889999999999999987753
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.75 E-value=0.038 Score=49.04 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=18.5
Q ss_pred EEEECCCCccHHHHHHHHHc
Q 006442 126 VGLVGVNGAGKTTQLRIIAG 145 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G 145 (645)
++|+|..|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 88999999999999998765
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.72 E-value=0.046 Score=51.52 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=23.1
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCCCC
Q 006442 124 EKVGLVGVNGAGKTTQLRIIAGQEEPD 150 (645)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~l~G~~~p~ 150 (645)
..+.|.||.|+||||+++.|+..++..
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~~ 70 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKDK 70 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhcc
Confidence 467899999999999999999876543
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.71 E-value=0.042 Score=49.27 Aligned_cols=22 Identities=32% Similarity=0.294 Sum_probs=19.3
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
.++|+|..|+|||||++.+.+-
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999887653
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.66 E-value=0.043 Score=49.12 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
+++++|..|+|||||++.+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999977663
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.66 E-value=0.043 Score=49.17 Aligned_cols=21 Identities=33% Similarity=0.757 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 006442 452 KTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g 472 (645)
++.++|..|+|||||++.+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999976654
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=91.65 E-value=0.043 Score=54.45 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=25.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC---CCCeeEEEEC
Q 006442 451 EKTAIIGPNGCGKSTLLKLIMGLE---KPRGGEVLLG 484 (645)
Q Consensus 451 e~v~i~G~NGsGKSTLl~~l~g~~---~p~~G~i~~~ 484 (645)
-++||.|+-|+|||||+..|...+ ...-|-|.+|
T Consensus 52 ~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavD 88 (323)
T d2qm8a1 52 IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 88 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred eEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecc
Confidence 379999999999999999998643 2334555555
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.62 E-value=0.056 Score=47.70 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.3
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
.++++|..|+|||||++.+.+-
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999988843
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.60 E-value=0.035 Score=52.22 Aligned_cols=42 Identities=12% Similarity=0.260 Sum_probs=30.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHccC--CCeEEEEecCHHHH
Q 006442 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVIISHDRAFL 319 (645)
Q Consensus 277 ~p~iLLLDEPts~LD~~~~~~l~~~L~~~--g~tvIivsHd~~~l 319 (645)
+..++|+||.=. |.......+...+... ...+|+++++.+.+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CceEEEeccccc-cccccchhhhcccccccccccceeeeccccch
Confidence 456999999854 7777777777777543 34578899887644
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=91.49 E-value=0.04 Score=52.39 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 006442 453 TAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 453 v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
+.|.||.|||||+|.+.|+...
T Consensus 43 vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 43 VLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhhcc
Confidence 6799999999999999998754
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=91.40 E-value=0.049 Score=51.05 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q 006442 125 KVGLVGVNGAGKTTQLRIIAG 145 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G 145 (645)
++||.|+-||||||+.+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999964
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.40 E-value=0.045 Score=50.75 Aligned_cols=41 Identities=15% Similarity=0.235 Sum_probs=27.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHccC--CCeEEEEecCHHHH
Q 006442 278 PDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVIISHDRAFL 319 (645)
Q Consensus 278 p~iLLLDEPts~LD~~~~~~l~~~L~~~--g~tvIivsHd~~~l 319 (645)
..++++||. ..+.......|...+.+. ...+++++++...+
T Consensus 100 ~kiiiiDe~-d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 142 (227)
T d1sxjc2 100 FKLIILDEA-DAMTNAAQNALRRVIERYTKNTRFCVLANYAHKL 142 (227)
T ss_dssp CEEEEETTG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred eEEEEEecc-ccchhhHHHHHHHHhhhcccceeeccccCcHHHh
Confidence 469999996 456777777777777543 34456677765544
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=91.35 E-value=0.063 Score=51.59 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=25.8
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHcCCC
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
=|+.|.++-|.||+|||||||+-.++-...
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q 79 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 79 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence 478999999999999999999887776543
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.33 E-value=0.049 Score=49.12 Aligned_cols=28 Identities=36% Similarity=0.509 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHc--CCCCCee
Q 006442 452 KTAIIGPNGCGKSTLLKLIMG--LEKPRGG 479 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g--~~~p~~G 479 (645)
++.|+|..|+|||||++-+.- -..|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 688999999999999998832 2357777
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.32 E-value=0.05 Score=48.12 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=18.7
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q 006442 125 KVGLVGVNGAGKTTQLRIIAG 145 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G 145 (645)
.+.++|..|+|||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998775
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.31 E-value=0.046 Score=49.42 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 006442 452 KTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g 472 (645)
+++|+|..|+|||||++.+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999977654
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.30 E-value=0.05 Score=47.89 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.1
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
.++|||..|+|||||++.+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999987653
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.29 E-value=0.029 Score=49.80 Aligned_cols=22 Identities=41% Similarity=0.444 Sum_probs=18.1
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
.++|+|+.|+|||||++.+++-
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999987653
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.23 E-value=0.047 Score=51.45 Aligned_cols=27 Identities=26% Similarity=0.519 Sum_probs=23.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 006442 451 EKTAIIGPNGCGKSTLLKLIMGLEKPR 477 (645)
Q Consensus 451 e~v~i~G~NGsGKSTLl~~l~g~~~p~ 477 (645)
..+.|.||.|+||||+++.|+..++..
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~~ 70 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKDK 70 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhcc
Confidence 468899999999999999999877543
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.21 E-value=0.048 Score=50.56 Aligned_cols=42 Identities=12% Similarity=0.263 Sum_probs=30.1
Q ss_pred CCCeEEeeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHH
Q 006442 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFV 603 (645)
Q Consensus 561 ~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~--~tvi~vsHd~~~i 603 (645)
+.+++|+||.- ++.......+...+.+.. ..+++++++.+-+
T Consensus 101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 101 KHKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQSNKI 144 (224)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred ceEEEEEeccc-ccchhHHHHHhhhccccccceeeeeccCchhhh
Confidence 36799999965 566667777777777654 3677888877554
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.18 E-value=0.034 Score=49.44 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=9.0
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
.++|+|..|+|||||++.+++-
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3889999999999999877653
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.13 E-value=0.053 Score=47.91 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=18.8
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q 006442 125 KVGLVGVNGAGKTTQLRIIAG 145 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G 145 (645)
.++|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998764
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.11 E-value=0.06 Score=48.06 Aligned_cols=30 Identities=30% Similarity=0.413 Sum_probs=25.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCccEE
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I 154 (645)
.+.|+|..|+|||||++-+.....|+.|..
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 478999999999999999877666777743
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.11 E-value=0.042 Score=51.63 Aligned_cols=42 Identities=14% Similarity=0.253 Sum_probs=33.0
Q ss_pred cCCCeEEeeCCCCCCCHHHHHHHHHHHHhcCc--eEEEEecCHHH
Q 006442 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYF 602 (645)
Q Consensus 560 ~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~~--tvi~vsHd~~~ 602 (645)
.+.+++|+||.- .|.......+.+.+.++.. .+|++|++.+.
T Consensus 130 ~~~~iiiide~d-~l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~ 173 (252)
T d1sxje2 130 HRYKCVIINEAN-SLTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 173 (252)
T ss_dssp -CCEEEEEECTT-SSCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred CCceEEEecccc-ccccccchhhhcccccccccccceeeeccccc
Confidence 356799999995 4888888889999988754 57899998753
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.07 E-value=0.054 Score=47.81 Aligned_cols=20 Identities=45% Similarity=0.486 Sum_probs=18.0
Q ss_pred EEEECCCCccHHHHHHHHHc
Q 006442 126 VGLVGVNGAGKTTQLRIIAG 145 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G 145 (645)
++|+|+.|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999997654
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=91.04 E-value=0.061 Score=49.33 Aligned_cols=24 Identities=38% Similarity=0.529 Sum_probs=21.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
-++|+|...+|||||+..|+|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 389999999999999999998654
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.03 E-value=0.055 Score=48.38 Aligned_cols=22 Identities=18% Similarity=0.427 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
.++++|..|+|||||++.+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999977764
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=90.84 E-value=0.028 Score=55.83 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=23.6
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCCC
Q 006442 124 EKVGLVGVNGAGKTTQLRIIAGQEEP 149 (645)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~l~G~~~p 149 (645)
.-+.|+|+.|+|||||++.+++++++
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCCC
Confidence 35789999999999999999999876
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.83 E-value=0.055 Score=50.12 Aligned_cols=41 Identities=17% Similarity=0.270 Sum_probs=30.1
Q ss_pred CCCeEEeeCCCCCCCHHHHHHHHHHHHhcCc--eEEEEecCHHH
Q 006442 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYF 602 (645)
Q Consensus 561 ~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~~--tvi~vsHd~~~ 602 (645)
+.+++|+||. ..+.......+...|.+... -+++++++...
T Consensus 99 ~~kiiiiDe~-d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ 141 (227)
T d1sxjc2 99 GFKLIILDEA-DAMTNAAQNALRRVIERYTKNTRFCVLANYAHK 141 (227)
T ss_dssp SCEEEEETTG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CeEEEEEecc-ccchhhHHHHHHHHhhhcccceeeccccCcHHH
Confidence 3469999997 46778888899999987753 45666666543
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.82 E-value=0.06 Score=50.05 Aligned_cols=28 Identities=25% Similarity=0.391 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHH-HcCCCCCee
Q 006442 452 KTAIIGPNGCGKSTLLKLI-MGLEKPRGG 479 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l-~g~~~p~~G 479 (645)
++.|+|.+|+|||||++-+ .+-..|+-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 6899999999999999876 444567766
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=90.80 E-value=0.11 Score=46.66 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=21.4
Q ss_pred EECCcEEEEECCCCccHHHHHHHHHc
Q 006442 120 VKKGEKVGLVGVNGAGKTTQLRIIAG 145 (645)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~l~G 145 (645)
.-.|.-+.|.|++|+|||||.-.+..
T Consensus 11 ~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 11 DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 44567899999999999999877653
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.78 E-value=0.05 Score=52.28 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=23.0
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 449 RGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 449 ~Ge~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
...-+-|.||.|||||+|.++|++.+.
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 344488999999999999999999873
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.66 E-value=0.055 Score=51.73 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.5
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q 006442 126 VGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
+.|.||.|||||+|+++++...
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEecCCCCCchHHHHHHHHHh
Confidence 7899999999999999999864
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.58 E-value=0.062 Score=48.25 Aligned_cols=21 Identities=38% Similarity=0.360 Sum_probs=18.6
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q 006442 125 KVGLVGVNGAGKTTQLRIIAG 145 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G 145 (645)
.++|+|..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 389999999999999988764
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.49 E-value=0.065 Score=48.23 Aligned_cols=28 Identities=32% Similarity=0.551 Sum_probs=22.5
Q ss_pred EEEEECCCCccHHHHHHHHHc--CCCCCcc
Q 006442 125 KVGLVGVNGAGKTTQLRIIAG--QEEPDSG 152 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G--~~~p~~G 152 (645)
.+.|+|..|+|||||++-+.- ...|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 478999999999999998842 2357777
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.37 E-value=0.066 Score=47.89 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=18.0
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q 006442 125 KVGLVGVNGAGKTTQLRIIAG 145 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G 145 (645)
.++++|..|+|||||++.+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999986654
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=90.31 E-value=0.071 Score=51.97 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
.+||||...+|||||+++|++--.
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~~~ 35 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKSVL 35 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHSTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Confidence 599999999999999999998643
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=90.29 E-value=0.062 Score=51.07 Aligned_cols=22 Identities=32% Similarity=0.699 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 006442 453 TAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 453 v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
+.+.||.|||||+|.++|+..+
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 5799999999999999999865
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.22 E-value=0.056 Score=52.34 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.8
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q 006442 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
.+++|+||-++||||||+.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 379999999999999999999864
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.20 E-value=0.065 Score=50.06 Aligned_cols=24 Identities=17% Similarity=0.369 Sum_probs=21.4
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q 006442 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
.+++|=|+-||||||+++.|.-.+
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 478999999999999999998654
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.10 E-value=0.066 Score=48.28 Aligned_cols=22 Identities=32% Similarity=0.294 Sum_probs=18.7
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
.++|+|..|+|||||++.+.+-
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999877643
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=89.93 E-value=0.057 Score=55.92 Aligned_cols=23 Identities=30% Similarity=0.654 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 006442 453 TAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 453 v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
+.++||+|||||-|.+.|++++.
T Consensus 52 ILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 52 ILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67999999999999999999874
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=89.91 E-value=0.08 Score=49.47 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 006442 452 KTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g 472 (645)
+|||+|.-||||||..+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999965
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.88 E-value=0.053 Score=52.24 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=24.7
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHcCC
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
=++.|.++-|.||+|||||||+-.++...
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~ 84 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANA 84 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHH
Confidence 47899999999999999999987666543
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.86 E-value=0.065 Score=52.00 Aligned_cols=52 Identities=8% Similarity=-0.003 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHccC-CCeEEEEec
Q 006442 263 GWQMRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYLGKQ-DVPMVIISH 314 (645)
Q Consensus 263 GqkqRvaLAraL~~~p~--iLLLDEPts~LD~~~~~~l~~~L~~~-g~tvIivsH 314 (645)
...+--++++..+.+++ +++....+..+-......+.+.+... ..+++++|+
T Consensus 147 ~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~~~~r~i~Vltk 201 (299)
T d2akab1 147 IEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITK 201 (299)
T ss_dssp HHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEEC
T ss_pred HHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHhCcCCCceeeEEec
Confidence 33344477888888887 44555555555544455555556543 578888876
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=89.81 E-value=0.051 Score=51.51 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=19.4
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q 006442 126 VGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
+.|.||.|+||||+++.++..+
T Consensus 49 l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHHHH
Confidence 5677999999999999998765
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.81 E-value=0.068 Score=51.74 Aligned_cols=24 Identities=33% Similarity=0.428 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 451 EKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 451 e~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
-+|+|+||-++||||||+.|+|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 379999999999999999999864
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=89.71 E-value=0.14 Score=45.95 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=20.8
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHc
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g 472 (645)
-.|.=+.|+|++|+|||||...|..
T Consensus 12 ~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 12 IYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp ETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred ECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 3567799999999999999877654
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=89.51 E-value=0.13 Score=45.80 Aligned_cols=28 Identities=21% Similarity=0.164 Sum_probs=22.2
Q ss_pred eEEEECCcEEEEECCCCccHHHHHHHHH
Q 006442 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIA 144 (645)
Q Consensus 117 sl~i~~Ge~~~lvG~NGsGKSTLl~~l~ 144 (645)
++-.-.|.-+.|.|++|+|||||.-.+.
T Consensus 9 ~~v~~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 9 VLVDVYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EEEEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCEEEEEEeCCCCCHHHHHHHHH
Confidence 3444557789999999999999986655
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=89.50 E-value=0.1 Score=50.76 Aligned_cols=23 Identities=30% Similarity=0.661 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
.++|+|.-+|||||||++|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999976
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=89.47 E-value=0.11 Score=49.71 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=29.7
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCC-CCCeeEEEECc
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLE-KPRGGEVLLGE 485 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~-~p~~G~i~~~g 485 (645)
-|+.|.++-|.||+|||||||.-.++... ++..-.+++|.
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidt 90 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 90 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 47899999999999999999987776544 34333455554
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=89.42 E-value=0.081 Score=48.64 Aligned_cols=20 Identities=35% Similarity=0.391 Sum_probs=18.5
Q ss_pred EEEECCCCccHHHHHHHHHc
Q 006442 126 VGLVGVNGAGKTTQLRIIAG 145 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G 145 (645)
++|+|..++|||||+..|++
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 79999999999999999964
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=89.17 E-value=0.17 Score=49.11 Aligned_cols=23 Identities=30% Similarity=0.611 Sum_probs=21.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
.++|||.-.||||||+++|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999965
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.17 E-value=0.088 Score=50.72 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=26.4
Q ss_pred eEEEecCcEEEEEcCCCCcHHHHHHHHHcC
Q 006442 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 444 sl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
-+.+-+|++++|+|+.|+|||||+..|+.-
T Consensus 62 l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 62 LAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 368899999999999999999998888653
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.12 E-value=0.096 Score=49.94 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 006442 453 TAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 453 v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
+-|.||.|||||+|+++++...
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEecCCCCCchHHHHHHHHHh
Confidence 6799999999999999999965
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=89.12 E-value=0.045 Score=54.23 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=23.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC
Q 006442 451 EKTAIIGPNGCGKSTLLKLIMGLEKP 476 (645)
Q Consensus 451 e~v~i~G~NGsGKSTLl~~l~g~~~p 476 (645)
..+-|+|+-|+|||||++.|.++++|
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCCC
Confidence 45889999999999999999999987
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=89.08 E-value=0.084 Score=51.80 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
.+||||..-+|||||+++|+|--
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred cEeEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999863
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.05 E-value=0.11 Score=50.38 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
.++|+|.-+|||||||++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999965
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.01 E-value=0.094 Score=48.88 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 451 EKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 451 e~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
.+|+|=|.-||||||+++.|...+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4789999999999999999987654
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=88.88 E-value=0.12 Score=46.78 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 006442 453 TAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 453 v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
+||+|.-.+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999854
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=88.80 E-value=0.077 Score=54.87 Aligned_cols=42 Identities=21% Similarity=0.397 Sum_probs=27.4
Q ss_pred EEEECCCCccHHHHHHHHHcCCC-CCccEEEEcCC-CceEEEEeccC
Q 006442 126 VGLVGVNGAGKTTQLRIIAGQEE-PDSGNVIKAKS-NMKIAFLSQEF 170 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G~~~-p~~G~I~~~~~-~~~i~~v~Q~~ 170 (645)
+.+|||+|||||-|.+.|++++. | -+..+.. -...||+-.+.
T Consensus 52 ILliGPTGvGKTlLAr~LAk~l~VP---Fv~~daT~fTeaGYvG~DV 95 (443)
T d1g41a_ 52 ILMIGPTGVGKTEIARRLAKLANAP---FIKVEATKFTEVGYVGKEV 95 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCC---EEEEEGGGGC----CCCCT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC---EEEeecceeeecceeecch
Confidence 78999999999999999999763 2 2333322 12478877764
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=88.65 E-value=0.069 Score=50.51 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 006442 453 TAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 453 v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
+.|+||.|+||||+++.++..+
T Consensus 49 l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHHHH
Confidence 5567999999999999999865
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=88.58 E-value=0.17 Score=44.98 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=21.1
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHc
Q 006442 447 IERGEKTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 447 i~~Ge~v~i~G~NGsGKSTLl~~l~g 472 (645)
.-.|.=+.|+|++|+|||||...|..
T Consensus 12 ~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 12 DVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 34677899999999999998866654
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.56 E-value=0.1 Score=46.59 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
++.|+|..|+|||||++-+..-
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999988553
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.53 E-value=0.11 Score=50.99 Aligned_cols=59 Identities=15% Similarity=0.083 Sum_probs=35.6
Q ss_pred cCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHH---hcCceEEEEecCHHHH
Q 006442 541 VSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAIS---EYKGTVITVSHDRYFV 603 (645)
Q Consensus 541 ~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~---~~~~tvi~vsHd~~~i 603 (645)
...++.-+..++.-..-+...|-++++-. .|....+.+.++.+ ..+..|+.++...+.-
T Consensus 195 ~~~~~~~e~~~~~~~~~~~~kP~~~v~Nk----~d~~~~e~~~~~~~~~~~~~~~vi~~sa~~E~~ 256 (319)
T d1wxqa1 195 PTKWSQDDLLAFASEIRRVNKPMVIAANK----ADAASDEQIKRLVREEEKRGYIVIPTSAAAELT 256 (319)
T ss_dssp GGGCCHHHHHHHHHHHHHHHSCEEEEEEC----GGGSCHHHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred hhhcCHHHHHHhHHHhhhhcCchhhhccc----ccchhhHHHHHHHHHHhhcCCEEEEecHHHHHH
Confidence 34577788888887777778887777532 22223344444433 3445777777766543
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=88.32 E-value=0.095 Score=52.68 Aligned_cols=30 Identities=20% Similarity=0.072 Sum_probs=26.7
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHcCCC
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
.++++..+.+.||.|+||||+.++|++.+.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 457888999999999999999999998763
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.10 E-value=0.11 Score=49.94 Aligned_cols=34 Identities=32% Similarity=0.471 Sum_probs=27.9
Q ss_pred eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHc
Q 006442 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG 145 (645)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G 145 (645)
++++ .=+.+-+|++.+|+|+.|+|||||+..|+-
T Consensus 57 raID-~l~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 57 KVVD-LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp HHHH-HHSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred eeee-eeccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 3443 346899999999999999999999777754
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.64 E-value=0.11 Score=48.38 Aligned_cols=22 Identities=50% Similarity=0.534 Sum_probs=19.7
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
++.|.|.=|||||||++-++..
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6889999999999999998864
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=87.60 E-value=0.12 Score=50.27 Aligned_cols=35 Identities=31% Similarity=0.427 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC------------CCCeeEEEEC
Q 006442 450 GEKTAIIGPNGCGKSTLLKLIMGLE------------KPRGGEVLLG 484 (645)
Q Consensus 450 Ge~v~i~G~NGsGKSTLl~~l~g~~------------~p~~G~i~~~ 484 (645)
+=++||+|...||||||+++|++-- .|.-|.+.+.
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~ 56 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVP 56 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEecc
Confidence 4469999999999999999999753 3456777654
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=87.30 E-value=0.13 Score=49.43 Aligned_cols=19 Identities=47% Similarity=0.639 Sum_probs=17.8
Q ss_pred EEEECCCCccHHHHHHHHH
Q 006442 126 VGLVGVNGAGKTTQLRIIA 144 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~ 144 (645)
++|+|..|+|||||+..|+
T Consensus 5 v~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 5 VALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHH
Confidence 7999999999999999994
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=87.06 E-value=0.14 Score=46.62 Aligned_cols=21 Identities=38% Similarity=0.408 Sum_probs=19.3
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q 006442 126 VGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G~ 146 (645)
+||+|..++|||||++.|++.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 799999999999999999864
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=86.80 E-value=0.16 Score=48.89 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=21.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
.+||||-.-+|||||+++|++--
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999863
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.77 E-value=0.16 Score=45.28 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.1
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
.+.|+|..|+|||||++.+..-
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988643
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.24 E-value=0.16 Score=48.93 Aligned_cols=19 Identities=37% Similarity=0.441 Sum_probs=17.7
Q ss_pred EEEECCCCccHHHHHHHHH
Q 006442 126 VGLVGVNGAGKTTQLRIIA 144 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~ 144 (645)
++|+|..|||||||+-.|+
T Consensus 9 i~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 7999999999999999884
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=86.14 E-value=0.18 Score=49.49 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
.+.++||+|+|||.|.+.|+..+.
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCcchhHHHHHHHHhhcc
Confidence 367999999999999999998763
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.89 E-value=0.21 Score=47.91 Aligned_cols=41 Identities=24% Similarity=0.457 Sum_probs=29.1
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeE-EEECce
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE-VLLGEH 486 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~-i~~~g~ 486 (645)
-|+.|.++-|.|++|||||||...++....-..|. |++|..
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE 97 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAE 97 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECC
Confidence 47899999999999999999976665543222333 555543
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=85.81 E-value=0.19 Score=48.28 Aligned_cols=35 Identities=34% Similarity=0.487 Sum_probs=27.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC-----------CCCeeEEEEC
Q 006442 450 GEKTAIIGPNGCGKSTLLKLIMGLE-----------KPRGGEVLLG 484 (645)
Q Consensus 450 Ge~v~i~G~NGsGKSTLl~~l~g~~-----------~p~~G~i~~~ 484 (645)
+=++||||-.-+|||||+++|++-- .|.-|.|.+.
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~ 47 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMP 47 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECC
T ss_pred CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecc
Confidence 3479999999999999999999653 3445776553
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=85.76 E-value=0.19 Score=49.38 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
.+.++||+|+|||.|.+.|+-.+
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCcchhHHHHHHHHhhc
Confidence 36899999999999999999764
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=85.75 E-value=0.19 Score=46.31 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 006442 453 TAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 453 v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
+-|.||.|||||-|+.+++...
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~ 60 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEA 60 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 5699999999999999997643
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=85.60 E-value=0.2 Score=46.22 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.5
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q 006442 126 VGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
+.|.||.|+|||-|+++++-..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~ 60 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEA 60 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 4799999999999999998754
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=85.46 E-value=0.2 Score=46.81 Aligned_cols=41 Identities=22% Similarity=0.247 Sum_probs=31.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHH
Q 006442 278 PDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFL 319 (645)
Q Consensus 278 p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l 319 (645)
.+|+|+||.=. |...+...|...+.+ .+..+|++|++..-+
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i 158 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 158 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCCCCeEEEEEcCCcccc
Confidence 45999999854 788888888888865 356788899887655
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=85.44 E-value=0.27 Score=48.23 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=27.1
Q ss_pred eeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCC
Q 006442 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
+++-+-...++| .+.++||.|+|||.|.+.|++.+
T Consensus 113 ~~~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 113 VAEFGGHRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEETTEEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred HHHHhhcccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 344444667777 55668999999999999999874
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=85.43 E-value=0.19 Score=45.95 Aligned_cols=20 Identities=30% Similarity=0.320 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 006442 453 TAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 453 v~i~G~NGsGKSTLl~~l~g 472 (645)
+||+|.-++|||||+..|..
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 79999999999999999963
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=85.38 E-value=0.26 Score=47.18 Aligned_cols=29 Identities=41% Similarity=0.565 Sum_probs=25.4
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
-|+.|.++-|.|++|||||||...++...
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~a 81 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQA 81 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHH
Confidence 47899999999999999999988877654
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=85.18 E-value=0.2 Score=48.04 Aligned_cols=19 Identities=37% Similarity=0.742 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 006442 453 TAIIGPNGCGKSTLLKLIM 471 (645)
Q Consensus 453 v~i~G~NGsGKSTLl~~l~ 471 (645)
+||+|..|+|||||+..|+
T Consensus 5 v~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 5 VALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHH
Confidence 7999999999999999994
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=85.12 E-value=0.2 Score=50.27 Aligned_cols=29 Identities=28% Similarity=0.334 Sum_probs=25.8
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 447 i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
++++..+.+.||.|+||||+.++|++.+.
T Consensus 151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 151 IPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 36677899999999999999999999874
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=85.12 E-value=0.28 Score=48.51 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=26.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEEC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~ 484 (645)
+|.|=|+=||||||+++.|...+....+.+.+.
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~~ 40 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYFP 40 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEEC
T ss_pred EEEEECCccCCHHHHHHHHHHHhccCCCeEEEe
Confidence 688999999999999999999876655555543
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=85.12 E-value=0.29 Score=48.28 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=22.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQEEPD 150 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~~p~ 150 (645)
++.|=|+-|+||||+++.|...+...
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~ 33 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGG 33 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCS
T ss_pred EEEEECCccCCHHHHHHHHHHHhccC
Confidence 57888999999999999999876543
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.83 E-value=0.19 Score=46.59 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
++.|.|.=||||||||+-|...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 5789999999999999999875
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=84.82 E-value=0.16 Score=48.80 Aligned_cols=33 Identities=21% Similarity=0.390 Sum_probs=27.0
Q ss_pred EEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 006442 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477 (645)
Q Consensus 445 l~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~ 477 (645)
+.|-+|++++|+|+.|+|||+|+..+..-..-.
T Consensus 62 ~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~ 94 (276)
T d1fx0a3 62 IPVGRGQRELIIGDRQTGKTAVATDTILNQQGQ 94 (276)
T ss_dssp SCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTT
T ss_pred ccccCCceEeeccCCCCChHHHHHHHHhhhccc
Confidence 688999999999999999999997654443333
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=84.77 E-value=0.21 Score=47.99 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 006442 453 TAIIGPNGCGKSTLLKLIM 471 (645)
Q Consensus 453 v~i~G~NGsGKSTLl~~l~ 471 (645)
+||+|..|||||||...|+
T Consensus 9 i~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 7999999999999999883
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=84.48 E-value=0.24 Score=45.24 Aligned_cols=52 Identities=10% Similarity=0.051 Sum_probs=34.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHccC--CCeEEEEecCHHHHH-hhcCeEEEE
Q 006442 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVIISHDRAFLD-QLCTKIVET 329 (645)
Q Consensus 277 ~p~iLLLDEPts~LD~~~~~~l~~~L~~~--g~tvIivsHd~~~l~-~~~d~i~~l 329 (645)
+.+|+|+||. -.|...+...|...+.+. +.-+|++|++..-+. .+-.|+..+
T Consensus 108 ~~kviIide~-d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~tI~SRc~~i 162 (207)
T d1a5ta2 108 GAKVVWVTDA-ALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLH 162 (207)
T ss_dssp SCEEEEESCG-GGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred ccceEEechh-hhhhhhhhHHHHHHHHhhcccceeeeeecChhhhhhhhcceeEEE
Confidence 4679999975 345566777888888753 455688899987443 344555443
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=84.24 E-value=0.3 Score=44.42 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
.+||+|.-.+|||||+..|.|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 489999999999999999998653
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=84.05 E-value=0.23 Score=45.99 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=17.8
Q ss_pred EEEECCCCccHHHHHHHHH
Q 006442 126 VGLVGVNGAGKTTQLRIIA 144 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~ 144 (645)
++++|..++|||||+..|+
T Consensus 6 i~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHH
Confidence 7999999999999999885
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=83.96 E-value=0.27 Score=45.66 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=18.4
Q ss_pred EEEECCCCccHHHHHHHHHc
Q 006442 126 VGLVGVNGAGKTTQLRIIAG 145 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G 145 (645)
++++|...+|||||+..|+.
T Consensus 12 i~viGHVd~GKSTL~~~Ll~ 31 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLH 31 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999964
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=83.14 E-value=0.19 Score=49.36 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=22.8
Q ss_pred EEEecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 445 l~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
...++| .+.++||.|||||.|.+.|++..
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 444444 45568999999999999999864
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=83.01 E-value=0.21 Score=48.00 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=27.7
Q ss_pred eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcC
Q 006442 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
++++ .=+.|-+|++.+|+|+.|+|||+|+..+.--
T Consensus 56 ~~ID-~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~ 90 (276)
T d1fx0a3 56 IAID-AMIPVGRGQRELIIGDRQTGKTAVATDTILN 90 (276)
T ss_dssp TTTT-TTSCCBTTCBCBEEESSSSSHHHHHHHHHHT
T ss_pred eEEe-ccccccCCceEeeccCCCCChHHHHHHHHhh
Confidence 3443 3368999999999999999999999765433
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=82.83 E-value=0.25 Score=50.17 Aligned_cols=44 Identities=11% Similarity=-0.041 Sum_probs=32.9
Q ss_pred CCeEEeeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHh
Q 006442 562 STLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQ 605 (645)
Q Consensus 562 p~lLlLDEPt~~LD~~s~~~l~~~l~~~~~tvi~vsHd~~~i~~ 605 (645)
|-++++||.-+-...+....+....+.++..+++++.++.-+..
T Consensus 277 ~v~l~lDE~~~~~~~~~l~~~l~~~Rk~Gv~~~l~~Qs~~ql~~ 320 (433)
T d1e9ra_ 277 RLWLFIDELASLEKLASLADALTKGRKAGLRVVAGLQSTSQLDD 320 (433)
T ss_dssp CEEEEESCGGGSCBCSSHHHHHHHCTTTTEEEEEEESCHHHHHH
T ss_pred ceEEEechHhhhcccHHHHHHHHHhCCCCceEEEEeccHHHHHH
Confidence 33688999877766566666666667788899999999776644
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=82.81 E-value=0.25 Score=49.49 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 006442 453 TAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 453 v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
+-++||+|||||-|.|.|+.+.
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eeeeCCCCccHHHHHHHHHhhc
Confidence 5589999999999999999876
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=82.76 E-value=0.26 Score=49.94 Aligned_cols=42 Identities=19% Similarity=0.104 Sum_probs=29.8
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHh
Q 006442 280 LLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 280 iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~ 321 (645)
++++||.-+-........+....++.|..+++++.++..+..
T Consensus 279 ~l~lDE~~~~~~~~~l~~~l~~~Rk~Gv~~~l~~Qs~~ql~~ 320 (433)
T d1e9ra_ 279 WLFIDELASLEKLASLADALTKGRKAGLRVVAGLQSTSQLDD 320 (433)
T ss_dssp EEEESCGGGSCBCSSHHHHHHHCTTTTEEEEEEESCHHHHHH
T ss_pred EEEechHhhhcccHHHHHHHHHhCCCCceEEEEeccHHHHHH
Confidence 577788766555455556666667788888888888777644
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=82.40 E-value=0.33 Score=44.27 Aligned_cols=41 Identities=7% Similarity=0.046 Sum_probs=32.1
Q ss_pred CCCeEEeeCCCCCCCHHHHHHHHHHHHhcCc--eEEEEecCHHH
Q 006442 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYF 602 (645)
Q Consensus 561 ~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~~--tvi~vsHd~~~ 602 (645)
+.+++|+||. -.|...+...|.+.+++... -+|++|++.+-
T Consensus 108 ~~kviIide~-d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ 150 (207)
T d1a5ta2 108 GAKVVWVTDA-ALLTDAAANALLKTLEEPPAETWFFLATREPER 150 (207)
T ss_dssp SCEEEEESCG-GGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGG
T ss_pred ccceEEechh-hhhhhhhhHHHHHHHHhhcccceeeeeecChhh
Confidence 3679999986 45667888899999998743 56888999863
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=82.33 E-value=0.32 Score=48.01 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=22.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQEEPD 150 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~~p~ 150 (645)
++.|=|+-||||||+++.|.-.+...
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~ 32 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAIT 32 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 48899999999999999999877543
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=81.58 E-value=0.3 Score=48.13 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=23.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLEKPR 477 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~~p~ 477 (645)
+|+|=|+=||||||+++.|...+...
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~ 32 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAIT 32 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 68999999999999999999887654
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.21 E-value=0.22 Score=48.15 Aligned_cols=28 Identities=29% Similarity=0.470 Sum_probs=24.7
Q ss_pred eEEEecCcEEEEEcCCCCcHHHHHHHHH
Q 006442 444 NLTIERGEKTAIIGPNGCGKSTLLKLIM 471 (645)
Q Consensus 444 sl~i~~Ge~v~i~G~NGsGKSTLl~~l~ 471 (645)
-+.|-+|++++|+|+.|+|||+|+..+.
T Consensus 62 l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 62 LVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred ccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 3688999999999999999999987554
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=80.83 E-value=0.34 Score=47.73 Aligned_cols=24 Identities=38% Similarity=0.649 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
+|+|=|+=||||||+++.|...+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCcCCCHHHHHHHHHHHhC
Confidence 588999999999999999987664
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=80.60 E-value=0.33 Score=47.80 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=19.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
++.|=|+-||||||+++.|....
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l 28 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALG 28 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC--
T ss_pred EEEEECCcCCCHHHHHHHHHHHh
Confidence 47899999999999999998654
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=80.41 E-value=0.44 Score=43.15 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=18.6
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q 006442 126 VGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G~ 146 (645)
+.|||+.|.|||+++.-|+-.
T Consensus 46 ~lLvG~pGVGKTalv~~LA~r 66 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEecCCcccHHHHHHHHHH
Confidence 579999999999999988753
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=80.19 E-value=0.43 Score=45.52 Aligned_cols=23 Identities=35% Similarity=0.291 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
-+.|||+.|+|||+++.-++-.+
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHH
Confidence 35799999999999999888643
|