Citrus Sinensis ID: 006448

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640----
Protein Sequence
MIITNNGWGITPATQTQLRRRPPPPRFQCLDLSVKKSSTPTSSLSFVLGCYSFPSSSKYKKVKHPLPQPLCCLCSDNTHSTNTNNTISSSSLDWDWNRWTRHFSEIEQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAASKDTVAEIMAQLKNAIDEERYHDASRLCRYTGSGLVGWWVGYSKDSDDPFGRLIQIKPGVGRFVARNYSPRQLVTASPGTPLFEIFVVKDNEESYVMQVVHLKQAKGTSTNSTSSPSKSTKSPSTSEVENASVVDVQGTKVKEERSDEKGINIEGVTEEGIKSVINFLKEKIPGLKVKVMNIDITAEVTDDADSLKQLIQDGEEAESSDSEGEADDIEEIQPDEVALEGANEASEDEKELDTKVFIGGVVHNNEDAPTKDEYVRMPADVKDLEKDSFVLHVPAKSLDYDHTGESKMSKLKVAALAAQGVSELMPFDVAKAFWSSDKASSKAQKQSRLSEYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWSGEGEKSSDMEFFEYVEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKGMGPYVKGADLGFLYVVPEQSFLVLFNRLKLPD
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccEEEcccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccccccccEEEEEccccEEEEEccccHHHccccccccEEEEEEEEcccccEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccEEEEEEEccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEEccEEEccccccccccccccccccccccccEEEEEEcccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccccEEEEEEEccccccccccEEEEEcccccccEEEEEEEcccccccccccccccccEEEEEEEEEccccccccEEEEEEEEEccccccccccccccccccEEEEEcccccccccccccccccEEEEEEccccccccccccccEEEEEEccccEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cEEEcccccccccccccccccccccccEEEEEcccccccccccEEEEEEEEcccccccccccccccccccEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccccccEEEEEEccccccEEEEEccHHHHHcccccccEEEEEEEEcccccEEEEEEEEEccccccccccccccccccccccccccccccEEEEcccccccccccccccccccHHccHHHHHHHHHccccccEEEEEEEccccEcccccccHHHHHccccccccccccccccccccccccccEccccccccccccccEEEEEEEEEEEcccccccccccEEEccEEEccccccEEEEEccccccccccccccccHHHHHHHHHccccccccHHHHHHHHccHHHHHHcccccccccEEEEccEEccccccccccEEEEEcccccccEEEEEEEcccccccccccccccEEEEEEEEEEEcccccccccEEEEEEEEcccccccccccccHHccEEEEEccccEEccccccccccEccEEEEEccccccccccccEEEEEEEcccccEEEEEccccccc
Coil and Loop (DISEMBL)
miitnngwgitpatqtqlrrrpppprfqcldlsvkksstptsslsfvlgcysfpssskykkvkhplpqplcclcsdnthstntnntissssldwdwnrwtrhFSEIEQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAASKDTVAEIMAQLKNAIDEERYHDASRLCRYTGSGLVGWwvgyskdsddpfgrliqikpgvgrfvarnysprqlvtaspgtplFEIFVVKDNEESYVMQVVHLKqakgtstnstsspskstkspstsevenasvvdvqgtkvkeersdekginiegvTEEGIKSVINFLKekipglkvkvMNIDITAEVTDDADSLKQLIQDgeeaessdsegeaddieeiqpdevaleganeasedekeldTKVFIGGvvhnnedaptkdeyvrmpadvkdlekdsfvlhvpaksldydhtgeskMSKLKVAALAAQgvselmpfDVAKAfwssdkasskaqkqsrlseyttfsrintsegdldpfdglyvgafgpygtEVVQLRRKYgqwsgegekssdmEFFEYVEAVKLtgdlnvpagevtfrakigkgsrlpnrgkfpdelgvvasysgqgriadfgfrnpkwvdgellqlngkgmgpyvkgadlgflyvvpeQSFLVLFNRLKLPD
Flexible Loop (DISEMBL)
miitnngwgitpatqtqlrrrppppRFQCLDlsvkksstptsslsFVLGCYSFPSSSKYKKVKHPLPQPLCCLCSDNTHSTNTnntissssldwdwNRWTRHFSEIEQAESYASLLKFQLEDAIEREDFEEAANLKNAIaeaaskdtVAEIMAQLKNAIDEERYHDASRLCRYTGSGLVGWWVGYSKDSDDPFGRLIQIKPGVGRFVARNYSPrqlvtaspgtpLFEIFVVKDNEESYVMQVVHLKqakgtstnstsspskstkspstsevenasvvdvqgtkvkeersdekginiegvteegIKSVINFLKEKIPGLKVKVMNIDITAEVTDDADSLKQLIQDGEeaessdsegeaddieeiqPDEVALEGANEASEDEKELDTKVFIGgvvhnnedaptkdeyVRMPADVKDLEKDSFVLHVPAKSLDYDHTGESKMSKLKVAALAAQGVSELMPFDVAKAFWSSdkasskaqkqsrlseyttfsrintsegdldpFDGLYVGAFGPYGTEVVQLRRKYGQWsgegekssdMEFFEYVEAVKLtgdlnvpaGEVTFrakigkgsrlpnrgkfpdELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKGMGPYVKGADLGFLYVVPEQSFLVLFNRLKLPD
Low Complexity Region (SEG)
MIITNNGWGITPATQTQLrrrpppprFQCLDLSVKKSSTPTSSLSFVLGCYSFPSSSKYKKVKHPLPQPLCCLCsdnthstntnntissssLDWDWNRWTRHFSEIEQAESYASLLKFQLEDAIEREDFeeaanlknaiaeaaSKDTVAEIMAQLKNAIDEERYHDASRLCRYTGSGLVGWWVGYSKDSDDPFGRLIQIKPGVGRFVARNYSPRQLVTASPGTPLFEIFVVKDNEESYVMQVVHLKQAKGtstnstsspskstkspstsEVENASVVDVQGTKVKEERSDEKGINIEGVTEEGIKSVINFLKEKIPGLKVKVMNIDITAEVTDDADSLKQLIQdgeeaessdsegeaddieeiQPDEVALEGANEASEDEKELDTKVFIGGVVHNNEDAPTKDEYVRMPADVKDLEKDSFVLHVPAKSLDYDHTGESKMSKLKVAALAAQGVSELMPFDVAKAFWssdkasskaqkqsRLSEYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWSGEGEKSSDMEFFEYVEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKGMGPYVKGADLGFLYVVPEQSFLVLFNRLKLPD
Disordered region (IsUnstruct)
*******************************************LSFVLGCYSFPSSSKYKKVKHPLPQPLCCLCSDNTH******TISSSSLDWDWNRWTRHFSEIEQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAASKDTVAEIMAQLKNAIDEERYHDASRLCRYTGSGLVGWWVGYSKDSDDPFGRLIQIKPGVGRFVARNYSPRQLVTASPGTPLFEIFVVKDNEESYVMQVVHL*************************************************NIEGVTEEGIKSVINFLKEKIPGLKVKVMNIDITAEVT*****************************************************KVFIGGVVH***********************DSFVLHVPAKSLDY**********LKVAALAAQGVSELMPFDVAKAFW***********************I***EGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWSG******DMEFFEYVEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKGMGPYVKGADLGFLYVVPEQSFLVLFNRL****
Disordered Region (DISOPRED)
*******WGITPATQTQLRRRPPPPRFQ***************LSFVLGCYSF*******************LC***********************RWTRHFSEIEQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAASKDTVAEIMAQLKNAIDEERYHDASRLCRYTGSGLVGWWVGYSKDSDDPFGRLIQIKPGVGRFVARNYSPRQLVTASPGTPLFEIFVVKDNEESYVMQVVH**************************************************************VINFLKEKIPGLKVKVMNIDI**********************************************************KVFIGGVV******************VKDLEKDSFVLHV****************************SELMPFDVAKAFWSSD***********LSEYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYG***********MEFFEYVEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKGMGPYVKGADLGFLYVVPEQSFLVLFNRLKL**
Disordered Region (DISEMBL)
MIITNNGWGITPATQTQLRRRPPPPRFQCLDLS********SSLSFVLGCYSFPSSSKYKKVKHPLPQPLCCLCSDNTHSTNTNNTISSSSLDWDWNRWTRHFSEIEQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAASKDTVAEIMAQLKNAIDEERYHDASRLCRYTGSGLVGWWVGYSKDSDDPFGRLIQIKPGVGRFVARNYSPRQLVTASPGTPLFEIFVVKDNEESYVMQVVHLK*****************************VVDVQG*********EKGINIEGVTEEGIKSVINFLKEKIPGLKVKVMNIDITAEVTDDADSLKQLIQ***************DIEEIQPDEVAL***********ELDTKVFIGGVVHNNEDAPTKDEYVRMPADVKDLEKDSFVLHVPAKSLDYDHTGESKMSKLKVAALAAQGVSELMPFDVAKAFW****************EYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWSGEGEKSSDMEFFEYVEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKGMGPYVKGADLGFLYVVPEQSFLVLFNRLKLPD
Disordered Region (DISPRO)
MIITNNGWGITPATQTQLRRRPPPPRFQCLDLSVKKSSTPTSSLSFVLGCYSFPSSSKYKKVKHPLPQPLCCLCSDNTHS*********SSLDWDWNRWTRHFSEIEQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAASKDTVAEIMAQLKNAIDEERYHDASRLCRYTGSGLVGWWVGYSKDSDDPFGRLIQIKPGVGRFVARNYSPRQLVTASPGTPLFEIFVVKDNEESYVMQVVHLKQA*****************************************************EGIKSVINFLKEKIPGLKVKVMNIDITAEVTDD**********************************************KELDTKVFIGGVVHNNEDAPTKDEYVRMPADVKDLEKDSFVLHVPAK************SKLKVAALAAQGVSELMPFDVAKAFWSSDKASSKAQKQSRLSEYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWSGEGEKSSDMEFFEYVEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKGMGPYVKGADLGFLYVVPEQSFLVLFNRLKL**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIITNNGWGITPATQTQLRRRPPPPRFQCLDLSVKKSSTPTSSLSFVLGCYSFPSSSKYKKVKHPLPQPLCCLCSDNTHSTNTNNTISSSSLDWDWNRWTRHFSEIEQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAASKDTVAEIMAQLKNAIDEERYHDASRLCRYTGSGLVGWWVGYSKDSDDPFGRLIQIKPGVGRFVARNYSPRQLVTASPGTPLFEIFVVKDNEESYVMQVVHLKQAKGTSTNSTSSPSKSTKSPSTSEVENASVVDVQGTKVKEERSDEKGINIEGVTEEGIKSVINFLKEKIPGLKVKVMNIDITAEVTDDADSLKQLIQDGEEAESSDSEGEADDIEEIQPDEVALEGANEASEDEKELDTKVFIGGVVHNNEDAPTKDEYVRMPADVKDLEKDSFVLHVPAKSLDYDHTGESKMSKLKVAALAAQGVSELMPFDVAKAFWSSDKASSKAQKQSRLSEYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWSGEGEKSSDMEFFEYVEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKGMGPYVKGADLGFLYVVPEQSFLVLFNRLKLPD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	644	2.2.26 [Sep-21-2011]
Q93YW0	684	Protein EXECUTER 1, chlor	no	no	0.821	0.773	0.390	2e-97

>sp|Q93YW0|EXEC1_ARATH Protein EXECUTER 1, chloroplastic OS=Arabidopsis thaliana GN=EX1 PE=1 SV=1

 Score =  357 bits (916), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 228/584 (39%), Positives = 329/584 (56%), Gaps = 55/584 (9%)

Query: 98  RWTRHFSEIEQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAASKDTVAEIMAQLKN 157
           RW +HF +++  +   S+LK QL  AI+RED+E+AA LK AIA  A+ D V ++M+    
Sbjct: 115 RWKKHFDQVDDQDRLLSVLKSQLNRAIKREDYEDAARLKVAIAATATNDAVGKVMSTFYR 174

Query: 158 AIDEERYHDASRLCRYTGSGLVGWWVGYSKDSDDPFGRLIQIKPGVGRFVARNYSPRQLV 217
           A+ EERY DA  L    G+GLVGWW G S+D  DPFG ++QI    GR+VAR+Y+PRQL 
Sbjct: 175 ALLEERYKDAVYLRDKAGAGLVGWWSGISEDVKDPFGLIVQITAEHGRYVARSYNPRQLS 234

Query: 218 TASPGTPLFEIFVVKDNEESYVMQVVHLKQAK-----GTSTNSTSSPSKSTKSPSTSEVE 272
           T++ G PLFEIF+  D + +Y  Q V+LK  +      T  + T +P +   SP   E  
Sbjct: 235 TSAAGAPLFEIFLTLDGKGNYKKQAVYLKWKEIFPDVPTMPSRTLTPGRFLTSPGRKEDT 294

Query: 273 NASVVDVQGTKVKEERSDEKGINIEGVTEEGIKSVINFLKEKIPGLKVKVMNIDITAEVT 332
               V+    +  +   D+  +  E     G +S   FL++ IPG+KVKVM +     V 
Sbjct: 295 GNLAVESSEDEESDNSDDDSDLLEE---SSGFQS---FLRDMIPGVKVKVMKVTAPGRV- 347

Query: 333 DDADSLKQLIQD----------GEEAESSDSEGEADDIEEIQPDEVALEGANEASEDE-- 380
            D D + ++I+            +  +    +    +I+E   D + LE   +   D   
Sbjct: 348 -DKDFISKVIEQIADEEDEENDLDIEDIDVEDDTKAEIDEKNAD-IELESVTDEIIDNNG 405

Query: 381 -KELDTKVFIGGVVHNNEDAPTKDEYVRMPADVKDLEKDSFVLHVPAKSLDYDHTGESKM 439
            +E+  K  IG +V          E +R PA+++ +E  SF L +  K L+   +   + 
Sbjct: 406 GREIAVKFVIGDIVDRLSGNQPLKESLRSPANLESVENSSFYLRL-EKDLNVKESKGVEG 464

Query: 440 SKL---KVAALAAQGVSELMPFDVAKAFWSSDKAS---------------SKAQKQSRLS 481
           + L   K +  + + +  +M  D+AK+     K S               S+AQ + +LS
Sbjct: 465 TTLVDGKGSRQSRRRIENIMG-DLAKSIEKEKKISVKMLKDVGELLSLTLSQAQNRQQLS 523

Query: 482 EYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWSG--EGEKSSDMEFFEY 539
             T F RI+ +   LDP DGLY+GA G Y +EV+ L+RK+GQW G  E +K +D+EF+EY
Sbjct: 524 GLTKFRRIDVTPS-LDPLDGLYIGAHGLYTSEVIHLKRKFGQWKGGKESKKPTDIEFYEY 582

Query: 540 VEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRNPK 599
           VEAVKLTGD  VPAG+V FRAKIG+   LP++G  P+E GV+A Y GQGR+AD GFRNP+
Sbjct: 583 VEAVKLTGDPYVPAGKVAFRAKIGRRYELPHKGLIPEEFGVIARYKGQGRLADPGFRNPR 642

Query: 600 WVDGELLQLNGKGMGPYVKGAD-LGFLYVVPEQSFLVLFNRLKL 642
           WVDGEL+ L+GK    YVKG   +GF+Y  PE  F++ FNRL+L
Sbjct: 643 WVDGELVILDGK----YVKGGPVVGFVYWAPEYHFVMFFNRLRL 682

Enables higher plants to perceive singlet oxygen as a stress signal that activates a genetically determined stress response program.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	644
255540691	658	EXECUTER1 protein, chloroplast precursor	0.972	0.951	0.692	0.0
297733793	656	unnamed protein product [Vitis vinifera]	0.981	0.963	0.675	0.0
359491590	648	PREDICTED: protein EXECUTER 1, chloropla	0.964	0.958	0.680	0.0
449518939	657	PREDICTED: protein EXECUTER 1, chloropla	0.954	0.936	0.644	0.0
357462003	630	Protein EXECUTER [Medicago truncatula] g	0.916	0.936	0.638	0.0
449441021	609	PREDICTED: protein EXECUTER 1, chloropla	0.899	0.950	0.661	0.0
356518979	634	PREDICTED: protein EXECUTER 1, chloropla	0.934	0.949	0.606	0.0
356507232	632	PREDICTED: protein EXECUTER 1, chloropla	0.936	0.954	0.602	0.0
297851182	647	predicted protein [Arabidopsis lyrata su	0.947	0.942	0.553	0.0
18396370	651	uncharacterized protein [Arabidopsis tha	0.948	0.938	0.537	1e-176

>gi|255540691|ref|XP_002511410.1| EXECUTER1 protein, chloroplast precursor, putative [Ricinus communis] gi|223550525|gb|EEF52012.1| EXECUTER1 protein, chloroplast precursor, putative [Ricinus communis]

 Score =  870 bits (2247), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/667 (69%), Positives = 536/667 (80%), Gaps = 41/667 (6%)

Query: 6   NGWGITPATQTQLRRRPPPPRFQCLDLSVKKSSTPTSSLSFVLGCYSFP-SSSKYKKVKH 64
           NG+G+  A  T    RP    F C+D S KKS+      SFVL    FP +    K VK 
Sbjct: 5   NGFGLGQAMTTVPHLRP----FCCIDFSAKKSNNS----SFVL----FPDNQHNNKNVKK 52

Query: 65  P------LPQPLCCLCS-DNTHSTNTN----NTISSSSLDWDWNRWTRHFSEIEQAESYA 113
           P           CC CS  NT+S +TN     +   SSLDWDW RW RHFSEIEQ ES+A
Sbjct: 53  PSFSLSRTRSLHCCRCSHSNTNSNSTNLAPSPSPPPSSLDWDWIRWNRHFSEIEQVESFA 112

Query: 114 SLLKFQLEDAIEREDFEEAANLKNAIAEAASKDTVAEIMAQLKNAIDEERYHDASRLCRY 173
           S+LKFQLEDAIE+EDF+EAA LK AIAEA SKD+VAEIM++L+NAIDEERYHDASRLC+Y
Sbjct: 113 SVLKFQLEDAIEKEDFQEAAKLKLAIAEATSKDSVAEIMSELQNAIDEERYHDASRLCKY 172

Query: 174 TGSGLVGWWVGYSKDSDDPFGRLIQIKPGVGRFVARNYSPRQLVTASPGTPLFEIFVVKD 233
           TGSGLVGWWVGYS DSDDPFGRL++I PGVGRFV R+YSPRQLVTASPGTPLFEIFVVKD
Sbjct: 173 TGSGLVGWWVGYSTDSDDPFGRLVRITPGVGRFVGRSYSPRQLVTASPGTPLFEIFVVKD 232

Query: 234 NEESYVMQVVHLKQAKGTSTNSTSSPSKSTKSPSTSEVENASVVDVQGTKVKEERSDEKG 293
            +E YVMQVV L++AK  +TNST SPSKS KSPS SEVE  S +DVQG +VK ERS+EKG
Sbjct: 233 ADERYVMQVVCLQRAKSVATNSTGSPSKSGKSPSPSEVEKESELDVQGNEVKAERSEEKG 292

Query: 294 INIEGVTEEGIKSVINFLKEKIPGLKVKVMNIDITAEVTDDADSLKQLIQDGEE-AESSD 352
           INIEG TEEGIKSVINFLK+KIPGLKVKVMN++ T EV +D DS+KQL+QD E+ A S  
Sbjct: 293 INIEGATEEGIKSVINFLKDKIPGLKVKVMNVNATEEVVEDNDSVKQLMQDDEKIASSES 352

Query: 353 SEGEADDIEEIQPDEVALEGANEASEDEKELDTKVFIGGVVHNNEDAPTKDEYVRMPADV 412
           SE E++++EEIQP  V++EG  + ++D K+LD K+FIGGVVHN+ED P+KDEYVR+PA++
Sbjct: 353 SEDESNELEEIQPAGVSVEGNTDPTDDGKDLDMKLFIGGVVHNDEDTPSKDEYVRLPAEI 412

Query: 413 KDLEKDSFVLHVPAKSLDYDHTGESKMSKLKVAALAAQGVSELMPFDVAKAFWSSDKASS 472
           KD+E+DSF LH+P KSL+YD + E K SK+KVAA+AA+GVSELMP D+AKAFW +DK SS
Sbjct: 413 KDIERDSFALHIPEKSLEYD-SKERKASKIKVAAIAAKGVSELMPPDIAKAFWGADKVSS 471

Query: 473 K---------------AQKQSRLSEYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQL 517
           K               AQKQSRLS++T FSRINTS  + DPFDGLYVGAFGPYGTEVVQL
Sbjct: 472 KVSRDVREIVKLAVSQAQKQSRLSKHTNFSRINTSNNNFDPFDGLYVGAFGPYGTEVVQL 531

Query: 518 RRKYGQWSGEGEKSSDMEFFEYVEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDE 577
           RRK+G W+   +KSSD+EFFEYVEAVKLTGDLNVPAG+VTFRAKIGKGSR PNRG +PDE
Sbjct: 532 RRKFGHWNVTDDKSSDVEFFEYVEAVKLTGDLNVPAGQVTFRAKIGKGSRNPNRGMYPDE 591

Query: 578 LGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKGMGPYVKGADLGFLYVVPEQSFLVLF 637
           LGVVASY GQGRIA+FGFRNP+WVDGELLQLNGKG+GPYVKGADLGFLYV+PEQSFLVLF
Sbjct: 592 LGVVASYKGQGRIAEFGFRNPQWVDGELLQLNGKGLGPYVKGADLGFLYVIPEQSFLVLF 651

Query: 638 NRLKLPD 644
           NRLKLP+
Sbjct: 652 NRLKLPE 658

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733793|emb|CBI15040.3| unnamed protein product [Vitis vinifera]

 Score =  861 bits (2225), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/668 (67%), Positives = 536/668 (80%), Gaps = 36/668 (5%)

Query: 1   MIITNNGWGITP-ATQTQLRRRPPPPRFQCLD--LSVKKSSTPTSSLSFV--LGCYSFPS 55
           M +TN  WG+   A+ TQ R     P   C D  LS K+SS       F   LGC  +  
Sbjct: 1   MALTN-AWGMGHIASMTQFR-----PSKSCSDALLSSKRSSNLKLGFFFGWGLGCSVYHK 54

Query: 56  SSKYKKVKHPLPQPLCCLCSDNTHSTNTNNTISSSSLDWDWNRWTRHFSEIEQAESYASL 115
            + ++  K P    LCC CS+N   T  NN  SSSS  WDWN+W+RHFSEIEQAES+AS+
Sbjct: 55  PADFRPRKSP---NLCCRCSNNP--TIANNGNSSSSSGWDWNQWSRHFSEIEQAESFASV 109

Query: 116 LKFQLEDAIEREDFEEAANLKNAIAEAASKDTVAEIMAQLKNAIDEERYHDASRLCRYTG 175
           LKFQLEDAIEREDFEEAA LK AIAEA S D+V EIM+QLKNAIDEERYHDAS+LCR+T 
Sbjct: 110 LKFQLEDAIEREDFEEAAKLKMAIAEAMSMDSVTEIMSQLKNAIDEERYHDASKLCRHTA 169

Query: 176 SGLVGWWVGYSKDSDDPFGRLIQIKPGVGRFVARNYSPRQLVTASPGTPLFEIFVVKDNE 235
           SGLVGWWVG S DSDDPFGRL+ I PGVGRFV R+YSPRQLVTAS GTPLFEIFVVKD++
Sbjct: 170 SGLVGWWVGCSADSDDPFGRLVHITPGVGRFVGRSYSPRQLVTASAGTPLFEIFVVKDSD 229

Query: 236 ESYVMQVVHLKQAKGTSTNSTSSPSKSTKSPSTSEVENASVVDVQGTKVKEERSDEKGIN 295
           E Y+MQVV+L++AKG++ N TS  S+ TK  S+SE E ASVVD+QG + K E+ +EKGI+
Sbjct: 230 EKYIMQVVYLQRAKGSTANPTSLTSRPTKGSSSSETETASVVDIQGNEGKTEKREEKGIS 289

Query: 296 IEGVTEEGIKSVINFLKEKIPGLKVKVMNIDITAEVTDDADSLKQLIQ-DGEEAESS-DS 353
           IEG TEEGIKSVINFLK+KIP LKVKVM I++  EV +D DS+KQ +Q D E+ +SS DS
Sbjct: 290 IEGATEEGIKSVINFLKDKIPELKVKVMKINVPDEVIEDGDSVKQFMQEDDEKTQSSEDS 349

Query: 354 EGEADDIEEIQPDEVALEGANEASEDEKELDTKVFIGGVVHNNEDAPTKDEYVRMPADVK 413
           E EADD+++IQPDEVAL G +  +ED + LD K+FIGGV+HN ED  +KD+YVR PA+++
Sbjct: 350 EDEADDLDKIQPDEVALGGGSNTAEDGQNLDMKLFIGGVLHNKEDTSSKDDYVRQPAEIR 409

Query: 414 DLEKDSFVLHVPAKSLDYDHTGESKMSKLKVAALAAQGVSELMPFDVAKAFWSSDKAS-- 471
           D+E+DSFVLHVP +S D+D  GE+K+SK+KVAA+AAQG+SELMP +VAKAFWS+DK S  
Sbjct: 410 DMERDSFVLHVPVRSQDHD-IGENKVSKVKVAAIAAQGISELMPSEVAKAFWSADKVSPK 468

Query: 472 -------------SKAQKQSRLSEYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQLR 518
                        S+AQK++RLSE+T+FSRI TS+G LDPFDGLYVGAFGPYGTEVVQLR
Sbjct: 469 VSRDVREIVKLAVSQAQKRNRLSEHTSFSRITTSKGSLDPFDGLYVGAFGPYGTEVVQLR 528

Query: 519 RKYGQWSG--EGEKSSDMEFFEYVEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPD 576
            K+G W+G  + +KSSD+EFFEYVEAVKLTGDLNVPAG+VTFRAKIGKGSR+PNRG +PD
Sbjct: 529 CKFGNWNGGDDNDKSSDVEFFEYVEAVKLTGDLNVPAGQVTFRAKIGKGSRIPNRGMYPD 588

Query: 577 ELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKGMGPYVKGADLGFLYVVPEQSFLVL 636
           ELGVVASYSGQGRIA+FGFRNP+WVDGELLQL+GKGMGPYV+GADLGFLYVVPEQSFLVL
Sbjct: 589 ELGVVASYSGQGRIAEFGFRNPQWVDGELLQLSGKGMGPYVRGADLGFLYVVPEQSFLVL 648

Query: 637 FNRLKLPD 644
           FNRLKLP+
Sbjct: 649 FNRLKLPE 656

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491590|ref|XP_002279734.2| PREDICTED: protein EXECUTER 1, chloroplastic [Vitis vinifera]

 Score =  857 bits (2214), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/655 (68%), Positives = 529/655 (80%), Gaps = 34/655 (5%)

Query: 13  ATQTQLRRRPPPPRFQCLD--LSVKKSSTPTSSLSFV--LGCYSFPSSSKYKKVKHPLPQ 68
           A+ TQ R     P   C D  LS K+SS       F   LGC  +   + ++  K P   
Sbjct: 5   ASMTQFR-----PSKSCSDALLSSKRSSNLKLGFFFGWGLGCSVYHKPADFRPRKSP--- 56

Query: 69  PLCCLCSDNTHSTNTNNTISSSSLDWDWNRWTRHFSEIEQAESYASLLKFQLEDAIERED 128
            LCC CS+N   T  NN  SSSS  WDWN+W+RHFSEIEQAES+AS+LKFQLEDAIERED
Sbjct: 57  NLCCRCSNNP--TIANNGNSSSSSGWDWNQWSRHFSEIEQAESFASVLKFQLEDAIERED 114

Query: 129 FEEAANLKNAIAEAASKDTVAEIMAQLKNAIDEERYHDASRLCRYTGSGLVGWWVGYSKD 188
           FEEAA LK AIAEA S D+V EIM+QLKNAIDEERYHDAS+LCR+T SGLVGWWVG S D
Sbjct: 115 FEEAAKLKMAIAEAMSMDSVTEIMSQLKNAIDEERYHDASKLCRHTASGLVGWWVGCSAD 174

Query: 189 SDDPFGRLIQIKPGVGRFVARNYSPRQLVTASPGTPLFEIFVVKDNEESYVMQVVHLKQA 248
           SDDPFGRL+ I PGVGRFV R+YSPRQLVTAS GTPLFEIFVVKD++E Y+MQVV+L++A
Sbjct: 175 SDDPFGRLVHITPGVGRFVGRSYSPRQLVTASAGTPLFEIFVVKDSDEKYIMQVVYLQRA 234

Query: 249 KGTSTNSTSSPSKSTKSPSTSEVENASVVDVQGTKVKEERSDEKGINIEGVTEEGIKSVI 308
           KG++ N TS  S+ TK  S+SE E ASVVD+QG + K E+ +EKGI+IEG TEEGIKSVI
Sbjct: 235 KGSTANPTSLTSRPTKGSSSSETETASVVDIQGNEGKTEKREEKGISIEGATEEGIKSVI 294

Query: 309 NFLKEKIPGLKVKVMNIDITAEVTDDADSLKQLIQ-DGEEAESS-DSEGEADDIEEIQPD 366
           NFLK+KIP LKVKVM I++  EV +D DS+KQ +Q D E+ +SS DSE EADD+++IQPD
Sbjct: 295 NFLKDKIPELKVKVMKINVPDEVIEDGDSVKQFMQEDDEKTQSSEDSEDEADDLDKIQPD 354

Query: 367 EVALEGANEASEDEKELDTKVFIGGVVHNNEDAPTKDEYVRMPADVKDLEKDSFVLHVPA 426
           EVAL G +  +ED + LD K+FIGGV+HN ED  +KD+YVR PA+++D+E+DSFVLHVP 
Sbjct: 355 EVALGGGSNTAEDGQNLDMKLFIGGVLHNKEDTSSKDDYVRQPAEIRDMERDSFVLHVPV 414

Query: 427 KSLDYDHTGESKMSKLKVAALAAQGVSELMPFDVAKAFWSSDKAS--------------- 471
           +S D+D  GE+K+SK+KVAA+AAQG+SELMP +VAKAFWS+DK S               
Sbjct: 415 RSQDHD-IGENKVSKVKVAAIAAQGISELMPSEVAKAFWSADKVSPKVSRDVREIVKLAV 473

Query: 472 SKAQKQSRLSEYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWSG--EGE 529
           S+AQK++RLSE+T+FSRI TS+G LDPFDGLYVGAFGPYGTEVVQLR K+G W+G  + +
Sbjct: 474 SQAQKRNRLSEHTSFSRITTSKGSLDPFDGLYVGAFGPYGTEVVQLRCKFGNWNGGDDND 533

Query: 530 KSSDMEFFEYVEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGR 589
           KSSD+EFFEYVEAVKLTGDLNVPAG+VTFRAKIGKGSR+PNRG +PDELGVVASYSGQGR
Sbjct: 534 KSSDVEFFEYVEAVKLTGDLNVPAGQVTFRAKIGKGSRIPNRGMYPDELGVVASYSGQGR 593

Query: 590 IADFGFRNPKWVDGELLQLNGKGMGPYVKGADLGFLYVVPEQSFLVLFNRLKLPD 644
           IA+FGFRNP+WVDGELLQL+GKGMGPYV+GADLGFLYVVPEQSFLVLFNRLKLP+
Sbjct: 594 IAEFGFRNPQWVDGELLQLSGKGMGPYVRGADLGFLYVVPEQSFLVLFNRLKLPE 648

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518939|ref|XP_004166493.1| PREDICTED: protein EXECUTER 1, chloroplastic-like [Cucumis sativus]

 Score =  795 bits (2054), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/645 (64%), Positives = 511/645 (79%), Gaps = 30/645 (4%)

Query: 27  FQCLDLSVKKSSTPTSSLSFVLGCYSFPSSSKYKKV--KHPLPQPLCCLCSDN------T 78
           F   DLS KKS+   S L    GC +  ++ K   +  +HP    L C CS N       
Sbjct: 16  FSSFDLSPKKSND--SRLIMSWGCATHINNPKLSVISTRHPRNSALFCRCSANGGTSESN 73

Query: 79  HSTNTNNTISSSSLDWDWNRWTRHFSEIEQAESYASLLKFQLEDAIEREDFEEAANLKNA 138
            + +++++ SSSSL+WDW RW R+FSEIEQAE++AS+LKFQLE+A+E+EDFEEAA LK  
Sbjct: 74  SNLSSSSSSSSSSLEWDWVRWNRYFSEIEQAENFASVLKFQLEEAVEKEDFEEAAKLKLV 133

Query: 139 IAEAASKDTVAEIMAQLKNAIDEERYHDASRLCRYTGSGLVGWWVGYSKDSDDPFGRLIQ 198
           IAE A KD+V EIM QLK+AI+EERY DAS LC+ TGSGLVGWWVGYS+DSDDPFGRLI+
Sbjct: 134 IAETARKDSVTEIMHQLKSAIEEERYQDASMLCKCTGSGLVGWWVGYSQDSDDPFGRLIR 193

Query: 199 IKPGVGRFVARNYSPRQLVTASPGTPLFEIFVVKDNEESYVMQVVHLKQAKGTSTNSTSS 258
           I PGVGRF+ R YSPRQLVTASPGTPLFEIF+VKD+EE YVMQVV+++++KG S  STSS
Sbjct: 194 ITPGVGRFIGRGYSPRQLVTASPGTPLFEIFIVKDDEERYVMQVVYMQRSKGNSKISTSS 253

Query: 259 PSKSTKSPSTSEVENASVVDVQGTKVKEERSDEKGINIEGVTEEGIKSVINFLKEKIPGL 318
           PS+ + SPSTS V+N + VD+    V +E S+EKG+ +E  TEEGIK VINFLK+KIPGL
Sbjct: 254 PSEPSNSPSTSGVKNQTAVDIPENVVTKEESEEKGVTMEEATEEGIKGVINFLKDKIPGL 313

Query: 319 KVKVMNIDITAEVTDDADSLKQLIQDGEE--AESSDSEGEADDIEEIQPDEVALEGANEA 376
           KVKVMN ++  EV DDA+S+KQL+Q+  E    S +S+ E D ++EIQP+ V+L   ++A
Sbjct: 314 KVKVMNTNVPEEVIDDANSVKQLMQEDSEKTGTSGNSDDEMDRLDEIQPEAVSLGENSDA 373

Query: 377 SEDEKELDTKVFIGGVVHNNEDAPTKDEYVRMPADVKDLEKDSFVLHVPAKSLDYDHTGE 436
           S+DEK+LD K++IGGVVHN+E+ PTKDE+VR PA ++++++DSFVLH+P +SLD D   E
Sbjct: 374 SDDEKDLDVKLYIGGVVHNSEETPTKDEFVRHPAFIQNMDRDSFVLHIPERSLDLD-AAE 432

Query: 437 SKMSKLKVAALAAQGVSELMPFDVAKAFWSSDKAS---------------SKAQKQSRLS 481
           +K+SK+KVAALAAQGVSELMP DVAK FW  DK S               S+AQK+S+LS
Sbjct: 433 NKVSKVKVAALAAQGVSELMPADVAKVFWGVDKVSPKISRNVREIVKRAVSQAQKRSKLS 492

Query: 482 EYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWSGEGEK--SSDMEFFEY 539
           EYTTF+RI T+ GDLDPFDGLYVGAFGPYGTEVVQLRRK+G W+    K  +SD+EFFEY
Sbjct: 493 EYTTFNRITTASGDLDPFDGLYVGAFGPYGTEVVQLRRKFGHWNDLDNKDDTSDIEFFEY 552

Query: 540 VEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRNPK 599
           VEAVKLTGDLN+PAG+VTFRAKIG+G R  NRG +PDELGVVASY GQGRIA+FGFRNP+
Sbjct: 553 VEAVKLTGDLNLPAGQVTFRAKIGRGIRNANRGIYPDELGVVASYKGQGRIAEFGFRNPQ 612

Query: 600 WVDGELLQLNGKGMGPYVKGADLGFLYVVPEQSFLVLFNRLKLPD 644
           W+DGELLQLNG+G+GPYVKGADLGFLYVVPE SFLVLFNRLKLP+
Sbjct: 613 WIDGELLQLNGRGIGPYVKGADLGFLYVVPEHSFLVLFNRLKLPE 657

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462003|ref|XP_003601283.1| Protein EXECUTER [Medicago truncatula] gi|355490331|gb|AES71534.1| Protein EXECUTER [Medicago truncatula]

 Score =  792 bits (2045), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/634 (63%), Positives = 493/634 (77%), Gaps = 44/634 (6%)

Query: 37  SSTPTSSLSFVLG-----CYSF---PSSSKYKKVKHPLPQPLCCLCSDNTHSTNTNNTIS 88
           S+T T+S  F L       +SF   PS S + + ++  P  L C           N+T  
Sbjct: 15  SNTTTTSSRFNLHPNKPPTFSFQNNPSISIFSR-RNRTPHFLRC---------TPNSTND 64

Query: 89  SSSLDWDWNRWTRHFSEIEQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAASKDTV 148
           +SSL+WDWNRW RHF +IEQAES+ASLLKFQLEDAIE+E+F+EAA LK AI EA SKD+V
Sbjct: 65  ASSLNWDWNRWCRHFDDIEQAESFASLLKFQLEDAIEKEEFQEAAKLKRAIVEATSKDSV 124

Query: 149 AEIMAQLKNAIDEERYHDASRLCRYTGSGLVGWWVGYSKDSDDPFGRLIQIKPGVGRFVA 208
           AEIM+QLKNAID+ERYHDAS+LCRYTGSGLVGWWVGYSK+S+DPFGR+I+I PG+GRFV 
Sbjct: 125 AEIMSQLKNAIDDERYHDASKLCRYTGSGLVGWWVGYSKNSEDPFGRIIRISPGMGRFVG 184

Query: 209 RNYSPRQLVTASPGTPLFEIFVVKDNEESYVMQVVHLKQAKGTSTNSTSSPSKSTKSPST 268
           ++YSPRQL+TAS GTPLFEI+VVK+ +++Y MQVV+L++AKG ST S   PS   K PS 
Sbjct: 185 KSYSPRQLLTASTGTPLFEIYVVKNADDTYHMQVVYLRRAKGNST-SNLPPSLLAKRPSK 243

Query: 269 SEVENASVVDVQGTKVK-EERSDEKGINIEGVTEEGIKSVINFLKEKIPGLKVKVMNIDI 327
            EVEN S  +VQ  + K EER+DEK  N+E  TE+GIKSVINFLKEKIPGLKVKVMNI++
Sbjct: 244 PEVENLSSAEVQEPEDKVEERNDEKNSNVEAATEDGIKSVINFLKEKIPGLKVKVMNINV 303

Query: 328 TAEVTDDADSLKQLIQDGEEAESSDSEGEADDIEEIQPDEVALEGANEASEDEKELDTKV 387
             E  +  DS+KQ++    E + + ++GE D+++E  PDEV LE   +AS++EK+LD K+
Sbjct: 304 EEEAREGNDSIKQIM----EEDGNKTDGEDDNLDE--PDEVTLESDGDASDEEKDLDMKL 357

Query: 388 FIGGVVHNNEDAPTKDEYVRMPADVKDLEKDSFVLHVPAKSLDYDHTGESKMSKLKVAAL 447
           FIGG+VHNNED  +KDE++R+PA++K++E++SF+LH+P ++LD D   E K+  +KVAAL
Sbjct: 358 FIGGIVHNNEDNSSKDEFIRLPAEIKNMERESFLLHIPRRNLDNDRK-EDKVRNIKVAAL 416

Query: 448 AAQGVSELMPFDVAKAFWSSDKASSK---------------AQKQSRLSEYTTFSRINTS 492
           AAQG+SELMP DVAKAFW SDK SSK               AQK+SRLSE T FSRI   
Sbjct: 417 AAQGISELMPSDVAKAFWGSDKVSSKVSKSMREIVKLAISQAQKKSRLSEDTYFSRIACP 476

Query: 493 EGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWS--GEGEKSSDMEFFEYVEAVKLTGDLN 550
            GD DPFDGLYVGAFGPYG E+VQLRRK+G W+       +SD+EFFEYVEAVKLTGDLN
Sbjct: 477 RGDFDPFDGLYVGAFGPYGIEIVQLRRKFGHWNDVDSENNTSDIEFFEYVEAVKLTGDLN 536

Query: 551 VPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNG 610
           VPAG+VTFRAKIGK +R  NRG +PDELGV ASY GQGRIADFGFRNPKWVDGELLQLNG
Sbjct: 537 VPAGQVTFRAKIGKVNRNANRGLYPDELGVNASYKGQGRIADFGFRNPKWVDGELLQLNG 596

Query: 611 KGMGPYVKGADLGFLYVVPEQSFLVLFNRLKLPD 644
           KGMGP++KGADLGFLY VPEQSFLVLFNRLKLP+
Sbjct: 597 KGMGPHMKGADLGFLYAVPEQSFLVLFNRLKLPE 630

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441021|ref|XP_004138282.1| PREDICTED: protein EXECUTER 1, chloroplastic-like [Cucumis sativus]

 Score =  775 bits (2000), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/602 (66%), Positives = 485/602 (80%), Gaps = 23/602 (3%)

Query: 65  PLPQ--PLCCL-CSDNTHSTNTNNTISSSSLDWDWNRWTRHFSEIEQAESYASLLKFQLE 121
           P+ Q  P C    S    +  T+ + S+ S    W RW R+FSEIEQAE++AS+LKFQLE
Sbjct: 9   PMLQFTPFCSFDLSPKIANGGTSESNSNLSSSSSWVRWNRYFSEIEQAENFASVLKFQLE 68

Query: 122 DAIEREDFEEAANLKNAIAEAASKDTVAEIMAQLKNAIDEERYHDASRLCRYTGSGLVGW 181
           +A+E+EDFEEAA LK  IAE A KD+V EIM QLK+AI+EERY DAS LC+ TGSGLVGW
Sbjct: 69  EAVEKEDFEEAAKLKLVIAETARKDSVTEIMHQLKSAIEEERYQDASMLCKCTGSGLVGW 128

Query: 182 WVGYSKDSDDPFGRLIQIKPGVGRFVARNYSPRQLVTASPGTPLFEIFVVKDNEESYVMQ 241
           WVGYS+DSDDPFGRLI+I PGVGRF+ R YSPRQLVTASPGTPLFEIF+VKD+EE YVMQ
Sbjct: 129 WVGYSQDSDDPFGRLIRITPGVGRFIGRGYSPRQLVTASPGTPLFEIFIVKDDEERYVMQ 188

Query: 242 VVHLKQAKGTSTNSTSSPSKSTKSPSTSEVENASVVDVQGTKVKEERSDEKGINIEGVTE 301
           VV+++++KG S  STSSPS+ + SPSTS V+N + VD+    V +E S+EKG+ +E  TE
Sbjct: 189 VVYMQRSKGNSKISTSSPSEPSNSPSTSGVKNQTAVDIPENVVTKEESEEKGVTMEEATE 248

Query: 302 EGIKSVINFLKEKIPGLKVKVMNIDITAEVTDDADSLKQLIQDGEE--AESSDSEGEADD 359
           EGIK VINFLK+KIPGLKVKVMN ++  EV DDA+S+KQL+Q+  E    S +S+ E D 
Sbjct: 249 EGIKGVINFLKDKIPGLKVKVMNTNVPEEVIDDANSVKQLMQEDSEKTGTSGNSDDEMDR 308

Query: 360 IEEIQPDEVALEGANEASEDEKELDTKVFIGGVVHNNEDAPTKDEYVRMPADVKDLEKDS 419
           ++EIQP+ V+L   ++AS+DEK+LD K++IGGVVHN+E+ PTKDE+VR PA ++++++DS
Sbjct: 309 LDEIQPEAVSLGENSDASDDEKDLDVKLYIGGVVHNSEETPTKDEFVRHPAFIQNMDRDS 368

Query: 420 FVLHVPAKSLDYDHTGESKMSKLKVAALAAQGVSELMPFDVAKAFWSSDKAS-------- 471
           FVLH+P +SLD D   E+K+SK+KVAALAAQGVSELMP DVAK FW  DK S        
Sbjct: 369 FVLHIPERSLDLD-AAENKVSKVKVAALAAQGVSELMPADVAKVFWGVDKVSPKISRNVR 427

Query: 472 -------SKAQKQSRLSEYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQW 524
                  S+AQK+S+LSEYTTF+RI T+ GDLDPFDGLYVGAFGPYGTEVVQLRRK+G W
Sbjct: 428 EIVKRAVSQAQKRSKLSEYTTFNRITTASGDLDPFDGLYVGAFGPYGTEVVQLRRKFGHW 487

Query: 525 SGEGEK--SSDMEFFEYVEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVA 582
           +    K  +SD+EFFEYVEAVKLTGDLN+PAG+VTFRAKIG+G R  NRG +PDELGVVA
Sbjct: 488 NDLDNKDDTSDIEFFEYVEAVKLTGDLNLPAGQVTFRAKIGRGIRNANRGIYPDELGVVA 547

Query: 583 SYSGQGRIADFGFRNPKWVDGELLQLNGKGMGPYVKGADLGFLYVVPEQSFLVLFNRLKL 642
           SY GQGRIA+FGFRNP+W+DGELLQLNG+G+GPYVKGADLGFLYVVPE SFLVLFNRLKL
Sbjct: 548 SYKGQGRIAEFGFRNPQWIDGELLQLNGRGIGPYVKGADLGFLYVVPEHSFLVLFNRLKL 607

Query: 643 PD 644
           P+
Sbjct: 608 PE 609

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518979|ref|XP_003528152.1| PREDICTED: protein EXECUTER 1, chloroplastic-like [Glycine max]

 Score =  773 bits (1997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/645 (60%), Positives = 482/645 (74%), Gaps = 43/645 (6%)

Query: 28  QCLDLSVKKSSTPTSSLSF--------VLGCYSFPSSSKYKKVKHPLPQPLCCLCSDNTH 79
           Q + +++  ++T T S  F        +LG    P  +             CC C+ N+ 
Sbjct: 5   QAISIAISTTATRTPSCCFHFNTKKPSLLGLAHSPQPNLSISAPRNRNNTHCCRCTLNSD 64

Query: 80  STNTNNTISSSSLDWDWNRWTRHFSEIEQAESYASLLKFQLEDAIEREDFEEAANLKNAI 139
            T         SL WDWNRW RHFS+IEQAE++AS+LKFQL+DAIE+EDFEEA  LK A+
Sbjct: 65  HT---------SLTWDWNRWCRHFSQIEQAENFASVLKFQLDDAIEKEDFEEAVKLKRAL 115

Query: 140 AEAASKDTVAEIMAQLKNAIDEERYHDASRLCRYTGSGLVGWWVGYSKDSDDPFGRLIQI 199
            EA SKDTVAE+M QLK+AID+ERYHDASRLC+ TGSGLVGWWVGY K SDDPFGR+I I
Sbjct: 116 VEATSKDTVAEVMDQLKSAIDDERYHDASRLCKCTGSGLVGWWVGYPKASDDPFGRIIHI 175

Query: 200 KPGVGRFVARNYSPRQLVTASPGTPLFEIFVVKDNEESYVMQVVHLKQAKGTS-TNSTSS 258
            PG+GRF+ ++YSPRQL+ AS GTP+FEI+VVK+ +++Y MQVV+L+QAKG S  N  S 
Sbjct: 176 SPGMGRFIGKSYSPRQLMRASTGTPIFEIYVVKNADDTYHMQVVYLRQAKGKSRRNPQSV 235

Query: 259 PSKSTKSPSTSEVENASVVDVQGTKVKEERSDEKGINIEGVTEEGIKSVINFLKEKIPGL 318
           P+   K PS  EVENAS V+VQ  + K ER+DEK  NIEGVTEEGIKSVINFLKEKIPGL
Sbjct: 236 PA---KGPSKPEVENASAVEVQEPEEKIERNDEKNTNIEGVTEEGIKSVINFLKEKIPGL 292

Query: 319 KVKVMNIDITAEVTDDADSLKQLIQD--GEEAESSDSEGEADDIEEIQPDEVALEGANEA 376
           K+KVMN+ +  E  ++ DS+KQL+++   +   S + E E ++++E  PD V LE   +A
Sbjct: 293 KIKVMNVSVEEEAAENNDSIKQLMEEDSNKTGSSENHEEEVNNLDE--PDAVTLERDGDA 350

Query: 377 SEDEKELDTKVFIGGVVHNNEDAPTKDEYVRMPADVKDLEKDSFVLHVPAKSLDYDHTGE 436
           +E+EK+L+ K+ IGGVVHNNED P KDE++R+PA++K++EKDSFV H    ++DY    E
Sbjct: 351 TEEEKDLEMKLLIGGVVHNNEDTPVKDEFIRLPAEIKNMEKDSFVFHFDCGNVDYG-IKE 409

Query: 437 SKMSKLKVAALAAQGVSELMPFDVAKAFWSSDKASSK---------------AQKQSRLS 481
            K+  +KVAALAAQGVSELMP DVA AFWSSDK SSK               AQK+++LS
Sbjct: 410 DKIPNIKVAALAAQGVSELMPPDVANAFWSSDKVSSKISKSMRDIVRVAMSQAQKRTKLS 469

Query: 482 EYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWS--GEGEKSSDMEFFEY 539
             T FSRI  S GD DPFDGLYVGAFGPYG E+V LRRK+G W+      K+SD+ FFEY
Sbjct: 470 GDTNFSRIICSRGDSDPFDGLYVGAFGPYGMEIVHLRRKFGHWNEVDNENKTSDVGFFEY 529

Query: 540 VEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRNPK 599
           VEAVKLTGDLNVPAG VTFRAKIG+G+R+ N+G +PD+LGVVASY GQGRIAD+G+RNPK
Sbjct: 530 VEAVKLTGDLNVPAGLVTFRAKIGRGNRITNQGMYPDDLGVVASYKGQGRIADYGYRNPK 589

Query: 600 WVDGELLQLNGKGMGPYVKGADLGFLYVVPEQSFLVLFNRLKLPD 644
           WV+GELLQLNGKGMGPY+KGADLGFLYVVPEQSFLVLF+RLKLP+
Sbjct: 590 WVEGELLQLNGKGMGPYMKGADLGFLYVVPEQSFLVLFHRLKLPE 634

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507232|ref|XP_003522373.1| PREDICTED: protein EXECUTER 1, chloroplastic-like [Glycine max]

 Score =  768 bits (1984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/661 (60%), Positives = 489/661 (73%), Gaps = 58/661 (8%)

Query: 9   GITPATQTQLRRRPPPPRFQCLDLSVKKSSTPTSSLSFVLGCYSFPS-----SSKYKKVK 63
           G++ A  +    R P     C+D   KK         F+LG    P      S++  +  
Sbjct: 5   GVSQAISSTTATRTP----SCIDFHSKKP--------FLLGLAHSPQPNLSISARRSRNT 52

Query: 64  HPLPQPLCCLCSDNTHSTNTNNTISSSSLDWDWNRWTRHFSEIEQAESYASLLKFQLEDA 123
           H      CC C+ N+  T         SL WDWNRW RHFS+IEQAE++AS+LKFQL+DA
Sbjct: 53  H------CCRCTLNSDDT---------SLSWDWNRWCRHFSDIEQAENFASVLKFQLDDA 97

Query: 124 IEREDFEEAANLKNAIAEAASKDTVAEIMAQLKNAIDEERYHDASRLCRYTGSGLVGWWV 183
           IE+EDFEEA  L  A++EA SKDTVAEIM QLK+AID+ERYHDASRLC+ TGSGLVGWWV
Sbjct: 98  IEKEDFEEAVKLNRALSEATSKDTVAEIMDQLKSAIDDERYHDASRLCKCTGSGLVGWWV 157

Query: 184 GYSKDSDDPFGRLIQIKPGVGRFVARNYSPRQLVTASPGTPLFEIFVVKDNEESYVMQVV 243
           GYSK SDDPFGR+I I PG+GRF+ ++YSPRQL+ AS GTP+FEI+VVK+ +++Y MQVV
Sbjct: 158 GYSKASDDPFGRIIHISPGMGRFIGKSYSPRQLMRASTGTPIFEIYVVKNADDTYHMQVV 217

Query: 244 HLKQAKGTS-TNSTSSPSKSTKSPSTSEVENASVVDVQGTKVKEERSDEKGINIEGVTEE 302
           +L+QAKG S  N  S P+   K PS  EVENAS V+VQ  + K ER+DEK  NIEGVTEE
Sbjct: 218 YLRQAKGKSRRNPQSIPA---KGPSKPEVENASSVEVQEPEEKIERNDEKNSNIEGVTEE 274

Query: 303 GIKSVINFLKEKIPGLKVKVMNIDITAEVTDDADSLKQLIQD--GEEAESSDSEGEADDI 360
           GIKSVINFLKEKIPGLKVKVMN+++  E  ++ DS+KQL+++   E   S + E E +++
Sbjct: 275 GIKSVINFLKEKIPGLKVKVMNVNVEEEAAENNDSIKQLMEEDSNESGSSENHEEEVNNL 334

Query: 361 EEIQPDEVALEGANEASEDEKELDTKVFIGGVVHNNEDAPTKDEYVRMPADVKDLEKDSF 420
           +E  PD V LE   + +E+EK+ + K+FIGGVVHNNED P KDE++R+PA++K++EKDSF
Sbjct: 335 DE--PDAVTLERDGDVTEEEKDFEMKLFIGGVVHNNEDTPVKDEFIRLPAEIKNIEKDSF 392

Query: 421 VLHVPAKSLDYDHTGESKMSKLKVAALAAQGVSELMPFDVAKAFWSSDK----------- 469
           V H  + ++DY    E K+  +KVAALAAQG+SELMP DVA AFWSSDK           
Sbjct: 393 VFHFASGNVDYG-IKEDKIPNIKVAALAAQGISELMPPDVANAFWSSDKVSSKVSKSMRD 451

Query: 470 ----ASSKAQKQSRLSEYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWS 525
               A S+AQK++RLS  T FSRI  S GD DPFDGLYVGAFGPYG E+V LRRK+G W+
Sbjct: 452 IVRVAMSQAQKRTRLSGDTNFSRIICSRGDSDPFDGLYVGAFGPYGMEIVHLRRKFGHWN 511

Query: 526 --GEGEKSSDMEFFEYVEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVAS 583
                  +SD+ FFEYVEAVKLTGDLNVPAG+VTFRAKIG+G+R  NRG +PD+LGVVAS
Sbjct: 512 EVNNENNTSDVGFFEYVEAVKLTGDLNVPAGQVTFRAKIGRGNRNTNRGMYPDDLGVVAS 571

Query: 584 YSGQGRIADFGFRNPKWVDGELLQLNGKGMGPYVKGADLGFLYVVPEQSFLVLFNRLKLP 643
           Y GQGRIAD+G+RNPKWV+GELLQLNGKGMGPY+KGADLGFLYVVPEQSFLVLF+RLKLP
Sbjct: 572 YKGQGRIADYGYRNPKWVEGELLQLNGKGMGPYMKGADLGFLYVVPEQSFLVLFHRLKLP 631

Query: 644 D 644
           +
Sbjct: 632 E 632

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851182|ref|XP_002893472.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297339314|gb|EFH69731.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/652 (55%), Positives = 470/652 (72%), Gaps = 42/652 (6%)

Query: 20  RRPPPPRFQCLDLSVKKSSTP------TSSLSFVLGC-YSFPSSSKYKKVKHPLPQPLCC 72
           +R   P+F  L  S K S  P       ++ S  +G  +SF S + +    +P    L C
Sbjct: 11  QRISVPQFHLL-FSPKNSPIPELSTNKRTNFSVSIGLRHSFASITTW----NPKKPSLSC 65

Query: 73  LCSDNTHSTNTNNTISSSSLDWDWNRWTRHFSEIEQAESYASLLKFQLEDAIEREDFEEA 132
           L   N  + +  +T SS    WDW+RW RHFSEIE+ E+  SLLK QLEDA+E+EDFEEA
Sbjct: 66  L--RNCPAVDGADT-SSCEDKWDWDRWNRHFSEIEEVETVVSLLKSQLEDAVEKEDFEEA 122

Query: 133 ANLKNAIAEAASKDTVAEIMAQLKNAIDEERYHDASRLCRYTGSGLVGWWVGYSKDSDDP 192
             LK AIAEA   D VAEIM QL+ AI EERYHDASRLC  TGSGLVGWWVGY +DS++P
Sbjct: 123 VKLKQAIAEATVDDAVAEIMRQLQTAISEERYHDASRLCNETGSGLVGWWVGYPRDSEEP 182

Query: 193 FGRLIQIKPGVGRFVARNYSPRQLVTASPGTPLFEIFVVKDNEESYVMQVVHLKQAKGTS 252
           FGR++ I PGVGRF+ ++YSPRQLV  + GTPLFEIFVVKD +  YVMQVV+L+  K   
Sbjct: 183 FGRIVHITPGVGRFIGKSYSPRQLVAEAAGTPLFEIFVVKDTDGGYVMQVVYLQHVKQNL 242

Query: 253 TNSTSSPSKSTKSPSTSEVENASVVDVQGTKVKEERSDEKGINIEGVTEEGIKSVINFLK 312
           + S +S  ++ +S +TS +++ S++DV+G+++K ++ ++  +N    TEEGIK+VI FLK
Sbjct: 243 SISENSYLRAQQSSNTS-IDDPSILDVRGSELKSDKKEDIQLNAGEPTEEGIKNVIKFLK 301

Query: 313 EKIPGLKVKVMNIDITAE---VTDDADSLKQLIQDGEEAESSDSEGEADDIEEIQPDEVA 369
           +KIPGLK+KVM++    E   V  DA + ++L+ +G E  +S  + E ++  +   +  +
Sbjct: 302 DKIPGLKLKVMDVIKIPEEEIVGSDA-ATEELVGEGIEETNSSDDEEEEEENDSIEEISS 360

Query: 370 LEGANEASEDEKELDTKVFIGGVVHNNEDAPTKDEYVRMPADVKDLEKDSFVLHVPAKS- 428
           ++ A+      K L+TK+ IGGV+HN ED+   DE  R+ AD+ D E+DSF+LHVP +S 
Sbjct: 361 MDSADYG----KHLNTKLVIGGVLHNIEDSSIDDEIDRVSADIMDAERDSFILHVPGRSK 416

Query: 429 LDYDHTGESKMSKLKVAALAAQGVSELMPFDVAKAFWSSDKASSK--------------- 473
           +D D T ++ +SK +V ALAAQG+S+LMP +VAKAFW S+KAS K               
Sbjct: 417 IDID-TRKNGVSKEQVTALAAQGISDLMPPEVAKAFWGSEKASLKVSRNVREIVKLAINQ 475

Query: 474 AQKQSRLSEYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWS-GEGEKSS 532
           AQK +RLSEYT+F+RI T E +LDPFDGLYVGAFGPYGTE+VQL+RKYG+W+  EG  SS
Sbjct: 476 AQKGNRLSEYTSFNRIITPESNLDPFDGLYVGAFGPYGTEIVQLKRKYGRWNDAEGSNSS 535

Query: 533 DMEFFEYVEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGRIAD 592
           D+EFFEYVEAVKLTGD NVPAGEVTFRA+IG GSR+ N G FP+ELGV+ASY GQGRIAD
Sbjct: 536 DIEFFEYVEAVKLTGDPNVPAGEVTFRARIGNGSRMTNHGLFPEELGVLASYRGQGRIAD 595

Query: 593 FGFRNPKWVDGELLQLNGKGMGPYVKGADLGFLYVVPEQSFLVLFNRLKLPD 644
           FGF+NPKWV+G+LL+LNGKGMGPYVKGADLGFLY+ PEQSFLV+FNRL+LP+
Sbjct: 596 FGFKNPKWVEGKLLKLNGKGMGPYVKGADLGFLYIGPEQSFLVVFNRLRLPE 647

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396370|ref|NP_564287.1| uncharacterized protein [Arabidopsis thaliana] gi|15027911|gb|AAK76486.1| unknown protein [Arabidopsis thaliana] gi|21281187|gb|AAM45133.1| unknown protein [Arabidopsis thaliana] gi|332192719|gb|AEE30840.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  625 bits (1613), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 347/645 (53%), Positives = 459/645 (71%), Gaps = 34/645 (5%)

Query: 25  PRFQCL-----DLSVKKSSTPTSSLSFVLGC-YSFPSSSKYKKVKHPLPQPLCCLCSDNT 78
           P+F  L      L  + S+   ++ S  +G  +SF SS      K P    L CL   N 
Sbjct: 16  PQFHILFSPRNSLKPELSTNKRTNFSVSIGLRHSFASSISTCNPKAP---SLSCL--RNC 70

Query: 79  HSTNTNNTISS-SSLDWDWNRWTRHFSEIEQAESYASLLKFQLEDAIEREDFEEAANLKN 137
            + +  +T SS    DWDW+RW RHFSEIE+ ES  SLLK QLEDA+E+EDFEEA  LK 
Sbjct: 71  AAVDGADTSSSEDKWDWDWDRWNRHFSEIEEVESVVSLLKSQLEDAVEKEDFEEAVKLKQ 130

Query: 138 AIAEAASKDTVAEIMAQLKNAIDEERYHDASRLCRYTGSGLVGWWVGYSKDSDDPFGRLI 197
           AI+EA   D VAEIM QL+ A++EERYHDASRLC  TGSGLVGWWVG  +DS++PFGR++
Sbjct: 131 AISEATVDDAVAEIMRQLQTAVNEERYHDASRLCNETGSGLVGWWVGLPRDSEEPFGRIV 190

Query: 198 QIKPGVGRFVARNYSPRQLVTASPGTPLFEIFVVKDNEESYVMQVVHLKQAKGTSTNSTS 257
            I PGVGRF+ ++YSPRQLV  + GTPLFEIFV+KD +  YVMQVV+++  K   T S +
Sbjct: 191 HITPGVGRFIGKSYSPRQLVAEAAGTPLFEIFVIKDTDGGYVMQVVYVQHVKQNLTISEN 250

Query: 258 SPSKSTKSPSTSEVENASVVDVQGTKVKEERSDEKGINIEGVTEEGIKSVINFLKEKIPG 317
           S     +  S S + + S++DV+G+++K ++ ++  +N    TEEGIK+VI FLK+KIPG
Sbjct: 251 S-FSKVQQSSKSSINDPSILDVRGSELKVDKKEDTQLNAGEPTEEGIKNVIKFLKDKIPG 309

Query: 318 LKVKVMNIDITA--EVTDDADSLKQLIQDGEEAESSDSEGEADDIEEIQPDEVALEGANE 375
           LK+KVM++      E+    D+ ++L+  GE  E ++S  + +++EE + D +    + +
Sbjct: 310 LKLKVMDVIKIPEEEIVGSDDATEELV--GEGTEETNSSDDEEEVEEEENDSIEAISSMD 367

Query: 376 ASEDEKELDTKVFIGGVVHNNEDAPTKDEYVRMPADVKDLEKDSFVLHVPAKSLDYDHTG 435
           +++  K  +TK+ IGGV+HN ED+   DE VR+ A++ D E+DSF+LHVP +S     T 
Sbjct: 368 SADYGKHSNTKLVIGGVLHNIEDSSIDDEIVRVSANIMDTERDSFILHVPGRSKRDIDTR 427

Query: 436 ESKMSKLKVAALAAQGVSELMPFDVAKAFWSSDKASSK---------------AQKQSRL 480
           ++++SK +V ALAAQG+S+L+P +VA+AFW  +KAS K               AQK + L
Sbjct: 428 KNRVSKEQVTALAAQGLSDLLPPEVAEAFW-GEKASLKVSKHVHEIVKLAINQAQKGNHL 486

Query: 481 SEYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQW-SGEGEKSSDMEFFEY 539
           SEYT F+RI T E +LDPFDGLYVGAFGPYGTE+VQL+RKYG+W   EG  SSD+EFFEY
Sbjct: 487 SEYTAFNRIITPESNLDPFDGLYVGAFGPYGTEIVQLKRKYGRWDDAEGSNSSDIEFFEY 546

Query: 540 VEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRNPK 599
           VEAVKLTGD NVPAG+VTFRA+IG GSR+ N G FP+ELGV+ASY GQG+IADFGF+ P+
Sbjct: 547 VEAVKLTGDPNVPAGQVTFRARIGNGSRMTNHGLFPEELGVLASYRGQGKIADFGFKKPR 606

Query: 600 WVDGELLQLNGKGMGPYVKGADLGFLYVVPEQSFLVLFNRLKLPD 644
           WV+G+LL+LNGKGMGPYVKGADLGFLY+ PEQSFLVLFNRL+LP+
Sbjct: 607 WVEGKLLKLNGKGMGPYVKGADLGFLYIGPEQSFLVLFNRLRLPE 651

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	644
TAIR|locus:2196889	651	EX2 "EXECUTER 2" [Arabidopsis	0.939	0.929	0.501	3.7e-158
TAIR|locus:2134168	684	EX1 "EXECUTER1" [Arabidopsis t	0.246	0.232	0.580	4.4e-90
ASPGD|ASPL0000031789	457	AN5209 [Emericella nidulans (t	0.190	0.269	0.285	0.00081

TAIR|locus:2196889 EX2 "EXECUTER 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1541 (547.5 bits), Expect = 3.7e-158, P = 3.7e-158
 Identities = 317/632 (50%), Positives = 413/632 (65%)

Query:    32 LSVKKSSTPTSSLSFVLGC-YSFPSSSKYKKVKHPLPQPLCCLCXXXXXXXXXXXXXXXX 90
             L  + S+   ++ S  +G  +SF SS      K P    L CL                 
Sbjct:    28 LKPELSTNKRTNFSVSIGLRHSFASSISTCNPKAP---SLSCL-RNCAAVDGADTSSSED 83

Query:    91 XLDWDWNRWTRHFSEIEQAESYASLLKFQLEDAIEREDFXXXXXXXXXXXXXXSKDTVAE 150
               DWDW+RW RHFSEIE+ ES  SLLK QLEDA+E+EDF                D VAE
Sbjct:    84 KWDWDWDRWNRHFSEIEEVESVVSLLKSQLEDAVEKEDFEEAVKLKQAISEATVDDAVAE 143

Query:   151 IMAQLKNAIDEERYHDASRLCRYTGSGLVGWWVGYSKDSDDPFGRLIQIKPGVGRFVARN 210
             IM QL+ A++EERYHDASRLC  TGSGLVGWWVG  +DS++PFGR++ I PGVGRF+ ++
Sbjct:   144 IMRQLQTAVNEERYHDASRLCNETGSGLVGWWVGLPRDSEEPFGRIVHITPGVGRFIGKS 203

Query:   211 YSPRQLVTASPGTPLFEIFVVKDNEESYVMQVVHLKQAKGXXXXXXXXXXXXXXXXXXXE 270
             YSPRQLV  + GTPLFEIFV+KD +  YVMQVV+++  K                     
Sbjct:   204 YSPRQLVAEAAGTPLFEIFVIKDTDGGYVMQVVYVQHVK-QNLTISENSFSKVQQSSKSS 262

Query:   271 VENASVVDVQGTKVKEERSDEKGINIEGVTEEGIKSVINFLKEKIPGLKVKVMN-IDITA 329
             + + S++DV+G+++K ++ ++  +N    TEEGIK+VI FLK+KIPGLK+KVM+ I I  
Sbjct:   263 INDPSILDVRGSELKVDKKEDTQLNAGEPTEEGIKNVIKFLKDKIPGLKLKVMDVIKIPE 322

Query:   330 E-VTDDADSLKQLIQXXXXXXXXXXXXXXXXXXXXQPDEVALEGANEASEDEKELDTKVF 388
             E +    D+ ++L+                     + D +    + ++++  K  +TK+ 
Sbjct:   323 EEIVGSDDATEELV--GEGTEETNSSDDEEEVEEEENDSIEAISSMDSADYGKHSNTKLV 380

Query:   389 IGGVVHNNEDAPTKDEYVRMPADVKDLEKDSFVLHVPAKSL-DYDHTGESKMSKLKVAAL 447
             IGGV+HN ED+   DE VR+ A++ D E+DSF+LHVP +S  D D T ++++SK +V AL
Sbjct:   381 IGGVLHNIEDSSIDDEIVRVSANIMDTERDSFILHVPGRSKRDID-TRKNRVSKEQVTAL 439

Query:   448 AAQGVSELMPFDVAKAFWXXXXXXXXXXXXXR--------------LSEYTTFSRINTSE 493
             AAQG+S+L+P +VA+AFW                            LSEYT F+RI T E
Sbjct:   440 AAQGLSDLLPPEVAEAFWGEKASLKVSKHVHEIVKLAINQAQKGNHLSEYTAFNRIITPE 499

Query:   494 GDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWS-GEGEKSSDMEFFEYVEAVKLTGDLNVP 552
              +LDPFDGLYVGAFGPYGTE+VQL+RKYG+W   EG  SSD+EFFEYVEAVKLTGD NVP
Sbjct:   500 SNLDPFDGLYVGAFGPYGTEIVQLKRKYGRWDDAEGSNSSDIEFFEYVEAVKLTGDPNVP 559

Query:   553 AGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKG 612
             AG+VTFRA+IG GSR+ N G FP+ELGV+ASY GQG+IADFGF+ P+WV+G+LL+LNGKG
Sbjct:   560 AGQVTFRARIGNGSRMTNHGLFPEELGVLASYRGQGKIADFGFKKPRWVEGKLLKLNGKG 619

Query:   613 MGPYVKGADLGFLYVVPEQSFLVLFNRLKLPD 644
             MGPYVKGADLGFLY+ PEQSFLVLFNRL+LP+
Sbjct:   620 MGPYVKGADLGFLYIGPEQSFLVLFNRLRLPE 651

GO:0003677 "DNA binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0000304 "response to singlet oxygen" evidence=IGI

GO:0042651 "thylakoid membrane" evidence=IDA

GO:0010343 "singlet oxygen-mediated programmed cell death" evidence=IGI

TAIR|locus:2134168 EX1 "EXECUTER1" [Arabidopsis thaliana (taxid:3702)]

 Score = 488 (176.8 bits), Expect = 4.4e-90, Sum P(2) = 4.4e-90
 Identities = 97/167 (58%), Positives = 124/167 (74%)

Query:   479 RLSEYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWSG--EGEKSSDMEF 536
             +LS  T F RI+ +   LDP DGLY+GA G Y +EV+ L+RK+GQW G  E +K +D+EF
Sbjct:   521 QLSGLTKFRRIDVTPS-LDPLDGLYIGAHGLYTSEVIHLKRKFGQWKGGKESKKPTDIEF 579

Query:   537 FEYVEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGRIADFGFR 596
             +EYVEAVKLTGD  VPAG+V FRAKIG+   LP++G  P+E GV+A Y GQGR+AD GFR
Sbjct:   580 YEYVEAVKLTGDPYVPAGKVAFRAKIGRRYELPHKGLIPEEFGVIARYKGQGRLADPGFR 639

Query:   597 NPKWVDGELLQLNGKGMGPYVKGADL-GFLYVVPEQSFLVLFNRLKL 642
             NP+WVDGEL+ L+GK    YVKG  + GF+Y  PE  F++ FNRL+L
Sbjct:   640 NPRWVDGELVILDGK----YVKGGPVVGFVYWAPEYHFVMFFNRLRL 682

GO:0003677 "DNA binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0000304 "response to singlet oxygen" evidence=IGI

GO:0042651 "thylakoid membrane" evidence=IDA

GO:0000302 "response to reactive oxygen species" evidence=RCA

GO:0010039 "response to iron ion" evidence=RCA

GO:0055072 "iron ion homeostasis" evidence=RCA

GO:0010343 "singlet oxygen-mediated programmed cell death" evidence=IGI

ASPGD|ASPL0000031789 AN5209 [Emericella nidulans (taxid:162425)]

 Score = 118 (46.6 bits), Expect = 0.00081, P = 0.00081
 Identities = 38/133 (28%), Positives = 65/133 (48%)

Query:   480 LSEYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVV---QLRRKYGQWSGEGEKSSDMEF 536
             +S Y+T      +     P+ G++VG +  +G E +   Q  ++  +      ++ D+  
Sbjct:   298 MSTYSTLDPSLYTPTKEKPYQGIWVGDYSAHGCEFLLFLQRDKESDEDDARDPRNDDIIQ 357

Query:   537 FEYVEAVKLTGDLNVPAGEVTFRAK-IGKGS--RLPNRGKFPDELGVVASYSGQGRIADF 593
                +EAVKLTGD NVP G+ +F +  IG G   R+     F     VV S   +G +A  
Sbjct:   358 KGSLEAVKLTGDPNVPRGQFSFVSDDIGPGGTVRIATEALFQGAR-VVRS---RGHVAGL 413

Query:   594 GFRNPKWVDGELL 606
             GFR+  ++  +L+
Sbjct:   414 GFRDDTFITSQLI 426


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.135   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      644       553   0.00097  119 3  11 22  0.44    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  619 (66 KB)
  Total size of DFA:  308 KB (2158 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  43.00u 0.16s 43.16t   Elapsed:  00:00:02
  Total cpu time:  43.00u 0.16s 43.16t   Elapsed:  00:00:02
  Start:  Tue May 21 00:41:49 2013   End:  Tue May 21 00:41:51 2013

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	644
pfam12014	138	pfam12014, DUF3506, Domain of unknown function (DU	1e-57
pfam07743	78	pfam07743, HSCB_C, HSCB C-terminal oligomerisation	0.003

>gnl|CDD|192915 pfam12014, DUF3506, Domain of unknown function (DUF3506)

 Score =  190 bits (484), Expect = 1e-57
 Identities = 77/138 (55%), Positives = 96/138 (69%), Gaps = 7/138 (5%)

Query: 481 SEYTTFSRIN---TSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWSGE--GEKSSDME 535
              TTFSRI+    +    DP+ GLYVGA+  +G E + L +K GQW  +   ++ SD+E
Sbjct: 1   EGLTTFSRIDPELYTPTPEDPYRGLYVGAYSGHGCEFLLLLQKDGQWKEDDGSKEPSDIE 60

Query: 536 FFEYVEAVKLTGDLNVPAGEVTFRAKIGKGSRLP--NRGKFPDELGVVASYSGQGRIADF 593
           F+EYVEA+KLTGD NVP G+VTFRAKIGKG  +     G FP+ELGV+    GQG IAD 
Sbjct: 61  FYEYVEAIKLTGDPNVPRGQVTFRAKIGKGGLVRVAEEGLFPEELGVIRVVKGQGHIADP 120

Query: 594 GFRNPKWVDGELLQLNGK 611
           GFRNP+WVDGELL L+GK
Sbjct: 121 GFRNPRWVDGELLLLSGK 138

This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 131 to 148 amino acids in length. This domain has a conserved KLTGD sequence motif. Length = 138

>gnl|CDD|219548 pfam07743, HSCB_C, HSCB C-terminal oligomerisation domain

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 119 QLEDAIEREDFEEAANLKNAIAEAASKDTVAEIMAQLKNAIDEERYHDASRLCRY 173
            LE+A   +D E    LK  +     K  + E++ +L+ A+DE+ + +A+ L R 
Sbjct: 16  ALEEARASDDEEALDELKKEV-----KQRIKELLEELEEALDEKDWEEAADLVRR 65

This domain is the HSCB C-terminal oligomerisation domain and is found on co-chaperone proteins. Length = 78

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	644
PF12014	134	DUF3506: Domain of unknown function (DUF3506); Int	100.0
PF02151	36	UVR: UvrB/uvrC motif; InterPro: IPR001943 During t	97.46
COG3880	176	Modulator of heat shock repressor CtsR, McsA [Sign	95.37
PF02151	36	UVR: UvrB/uvrC motif; InterPro: IPR001943 During t	93.52
PRK14668	577	uvrC excinuclease ABC subunit C; Provisional	92.45
PRK14671	621	uvrC excinuclease ABC subunit C; Provisional	92.22
COG0322	581	UvrC Nuclease subunit of the excinuclease complex	91.56
TIGR00194	574	uvrC excinuclease ABC, C subunit. This family cons	91.41
PRK14666	694	uvrC excinuclease ABC subunit C; Provisional	90.9
PRK14670	574	uvrC excinuclease ABC subunit C; Provisional	90.75
PRK07883	557	hypothetical protein; Validated	90.57
TIGR00631	655	uvrb excinuclease ABC, B subunit. This family is b	90.04
PRK05298	652	excinuclease ABC subunit B; Provisional	89.76
PRK12306	519	uvrC excinuclease ABC subunit C; Reviewed	89.4
PRK00558	598	uvrC excinuclease ABC subunit C; Validated	88.79
PRK14667	567	uvrC excinuclease ABC subunit C; Provisional	88.36
COG0556	663	UvrB Helicase subunit of the DNA excision repair c	88.31
PRK14672	691	uvrC excinuclease ABC subunit C; Provisional	87.42
PRK14669	624	uvrC excinuclease ABC subunit C; Provisional	86.86

>PF12014 DUF3506: Domain of unknown function (DUF3506); InterPro: IPR021894 This presumed domain is functionally uncharacterised

Probab=100.00  E-value=8.3e-49  Score=361.67  Aligned_cols=129  Identities=43%  Similarity=0.763  Sum_probs=115.7

Q ss_pred             ccccceeeee-eeeCCCCCCCCCCceEeeccCCCccEEEEEEEecCCCCCCCC--CCCccccceEEEEEEEcCCCCccCe
Q 006448          478 SRLSEYTTFS-RINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWSGEGE--KSSDMEFFEYVEAVKLTGDLNVPAG  554 (644)
Q Consensus       478 ~~l~~~ttf~-rIytPt~~~dP~~GLwVGdYG~HG~EfL~L~~~~g~~~~~d~--~~sd~~~~~~LEAVKLTGDpNVPRG  554 (644)
                      +.++||+|++ ++||||+ .|||+|||||+||+||||||+|+|++++|++++.  ++++.+|+++|||||||||||||||
T Consensus         1 ~~~ttfstl~p~lytpt~-~~P~~GiwVGdyg~hG~Efl~l~q~~~~~~~~~~~~~~~~~~~~~~leAiKLTGDpNVPrG   79 (134)
T PF12014_consen    1 EGVTTFSTLDPELYTPTP-EKPFRGIWVGDYGPHGCEFLLLHQPDGQWDEDDGSKEPSDREFRGRLEAIKLTGDPNVPRG   79 (134)
T ss_pred             CCceEEEecChhccCCCC-CCCccceEEcccCCCCeEEEEEEccCCCccccccccccccccccceEEEEEecCCCCCcCc
Confidence            3567777777 8889999 9999999999999999999999999999988776  3578999999999999999999999


Q ss_pred             eEEEEEE-cCCCcCCCCCCCCCCCCCceeE-EEeeeeecCCCCCCCceeeeEEEEEcC
Q 006448          555 EVTFRAK-IGKGSRLPNRGKFPDELGVVAS-YSGQGRIADFGFRNPKWVDGELLQLNG  610 (644)
Q Consensus       555 eVTF~A~-ig~~~~lp~~G~~peElg~gAR-vkG~G~VA~~GF~np~wI~gqLIlis~  610 (644)
                      ||||+|+ ||+.++|   +++.++++.|+| |||+||||++||+|++||+|||||||+
T Consensus        80 evtF~A~DiG~~~~i---~~a~~~~f~G~r~vk~~G~vA~~GF~~~~~id~eLilis~  134 (134)
T PF12014_consen   80 EVTFRADDIGPGGRI---RVAHEGPFPGARRVKGQGHVAEPGFRNDKWIDGELILISG  134 (134)
T ss_pred             cEEEEecccCCCccc---ccccCCCCCceEEEecCCeEcCcCcCCCcceeeEEEEecC
Confidence            9999999 9999998   444555555555 999999999999999999999999986

This domain is found in eukaryotes. This domain is typically between 131 to 148 amino acids in length. This domain has a conserved KLTGD sequence motif.

>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []

Probab=97.46  E-value=0.00019  Score=53.59  Aligned_cols=35  Identities=37%  Similarity=0.548  Sum_probs=30.7

Q ss_pred             hhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhc
Q 006448          110 ESYASLLKFQLEDAIEREDFEEAANLKNAIAEAAS  144 (644)
Q Consensus       110 e~~~~~Lk~QLe~Av~~EDy~eAArLK~ai~~~~~  144 (644)
                      +.++..|+.+|+.||+.+||+.||+||+.|..+..
T Consensus         1 ~~~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~   35 (36)
T PF02151_consen    1 EKLIKELEEKMEEAVENEDFEKAARLRDQIKALKK   35 (36)
T ss_dssp             HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHc
Confidence            35788999999999999999999999999998863

UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.

>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]

Probab=95.37  E-value=0.019  Score=56.78  Aligned_cols=38  Identities=39%  Similarity=0.517  Sum_probs=33.4

Q ss_pred             HhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhcCC
Q 006448          109 AESYASLLKFQLEDAIEREDFEEAANLKNAIAEAASKD  146 (644)
Q Consensus       109 ~e~~~~~Lk~QLe~Av~~EDy~eAArLK~ai~~~~~~D  146 (644)
                      ..+=+.+|+.-|+++|++||||+||-+||.|+++..++
T Consensus       134 ~~~~I~~L~e~Lq~~i~~EefEeAA~iRDqIr~Lk~k~  171 (176)
T COG3880         134 PKRKIIALKEALQDLIEREEFEEAAVIRDQIRALKAKN  171 (176)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            34456889999999999999999999999999998654

>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []

Probab=93.52  E-value=0.059  Score=40.30  Aligned_cols=26  Identities=23%  Similarity=0.512  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhcc
Q 006448          148 VAEIMAQLKNAIDEERYHDASRLCRY  173 (644)
Q Consensus       148 V~~~~~~Lk~AI~EERY~DAA~lRD~  173 (644)
                      +..+...|..|+++++|+.|++|||.
T Consensus         4 i~~l~~~m~~a~~~~dfE~Aa~~Rd~   29 (36)
T PF02151_consen    4 IKELEEKMEEAVENEDFEKAARLRDQ   29 (36)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            45678899999999999999999996

UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.

>PRK14668 uvrC excinuclease ABC subunit C; Provisional

Probab=92.45  E-value=0.31  Score=55.75  Aligned_cols=48  Identities=23%  Similarity=0.383  Sum_probs=38.7

Q ss_pred             hhHHHhhhhhHHH-----HhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHh
Q 006448           96 WNRWTRHFSEIEQ-----AESYASLLKFQLEDAIEREDFEEAANLKNAIAEAA  143 (644)
Q Consensus        96 W~rW~rhF~~ve~-----~e~~~~~Lk~QLe~Av~~EDy~eAArLK~ai~~~~  143 (644)
                      =+.|+....++-.     ...++..|+.+|+.|.++.+||+||+||+.|.++.
T Consensus       179 ~e~Y~~~v~~~~~fL~G~~~~~~~~l~~~m~~aa~~l~FE~Aa~~Rd~i~~l~  231 (577)
T PRK14668        179 EEAYAEDVESAERFFEGETGVLADPLRREMEAAAQAQEFERAANLRDRLEAVE  231 (577)
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            3456655555554     34578999999999999999999999999998865

>PRK14671 uvrC excinuclease ABC subunit C; Provisional

Probab=92.22  E-value=0.32  Score=56.11  Aligned_cols=49  Identities=24%  Similarity=0.297  Sum_probs=39.1

Q ss_pred             ChhHHHhhhhhHH-----HHhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHh
Q 006448           95 DWNRWTRHFSEIE-----QAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAA  143 (644)
Q Consensus        95 dW~rW~rhF~~ve-----~~e~~~~~Lk~QLe~Av~~EDy~eAArLK~ai~~~~  143 (644)
                      +=+.|+....++.     .-..++..|+.+|+.|.++.+||.||++|+.|.++.
T Consensus       194 s~e~Y~~~v~~~~~fL~G~~~~l~~~L~~~M~~as~~l~FE~Aa~~RD~i~~l~  247 (621)
T PRK14671        194 SEEDYLEMIEEIVRLLKGKTSALIRSLTEEMQRAAAELKFEEAAELKDQIESLK  247 (621)
T ss_pred             CHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            3455775555554     235677999999999999999999999999998875

>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]

Probab=91.56  E-value=0.42  Score=54.90  Aligned_cols=47  Identities=26%  Similarity=0.261  Sum_probs=37.5

Q ss_pred             hHHHhhhhhHHHHh--------hHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHh
Q 006448           97 NRWTRHFSEIEQAE--------SYASLLKFQLEDAIEREDFEEAANLKNAIAEAA  143 (644)
Q Consensus        97 ~rW~rhF~~ve~~e--------~~~~~Lk~QLe~Av~~EDy~eAArLK~ai~~~~  143 (644)
                      ..+..|+..|+++.        .++..|+.+|+.|.+..|||.||+||+.|.++.
T Consensus       180 is~e~Y~e~v~~~~~fL~G~~~~v~~~L~~~M~~As~~l~FE~Aa~~RD~i~al~  234 (581)
T COG0322         180 ISEEEYREIVEEVKGFLKGKDDAVLQELEEKMEEASENLDFERAARLRDQIKALE  234 (581)
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence            33444555555554        455889999999999999999999999999886

>TIGR00194 uvrC excinuclease ABC, C subunit

Probab=91.41  E-value=0.51  Score=54.07  Aligned_cols=48  Identities=27%  Similarity=0.356  Sum_probs=37.2

Q ss_pred             hhHHHhhhhhHHHH-----hhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHh
Q 006448           96 WNRWTRHFSEIEQA-----ESYASLLKFQLEDAIEREDFEEAANLKNAIAEAA  143 (644)
Q Consensus        96 W~rW~rhF~~ve~~-----e~~~~~Lk~QLe~Av~~EDy~eAArLK~ai~~~~  143 (644)
                      =+.|+....++-+.     ..++..|+.+|+.|+++.+||.||++|+.|.++.
T Consensus       174 ~e~Y~~~v~~~~~fL~g~~~~~~~~L~~~M~~aa~~l~FE~Aa~~Rd~i~~l~  226 (574)
T TIGR00194       174 EEEYQQIVEKIELFFNGRPQEVIKELEQKMEKASENLEFEEAARIRDQIAAVR  226 (574)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            34555444444332     4567889999999999999999999999998875

This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.

>PRK14666 uvrC excinuclease ABC subunit C; Provisional

Probab=90.90  E-value=0.52  Score=55.21  Aligned_cols=50  Identities=22%  Similarity=0.310  Sum_probs=39.4

Q ss_pred             CChhHHHhhhhhHHH-----HhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHh
Q 006448           94 WDWNRWTRHFSEIEQ-----AESYASLLKFQLEDAIEREDFEEAANLKNAIAEAA  143 (644)
Q Consensus        94 ~dW~rW~rhF~~ve~-----~e~~~~~Lk~QLe~Av~~EDy~eAArLK~ai~~~~  143 (644)
                      .+-+.|+....++..     ...++..|+.+|+.|+++.+||+||+||+.|.++.
T Consensus       179 is~e~Y~~~V~~v~~fL~G~~~~l~~~L~~~M~~AAe~l~FE~AA~lRD~i~aL~  233 (694)
T PRK14666        179 VPRETYAALVRKVEMLLSGRSGELVDALRTEMEAASEALEFERAAVLRDQIRAVE  233 (694)
T ss_pred             CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            344667755555543     24577899999999999999999999999998876

>PRK14670 uvrC excinuclease ABC subunit C; Provisional

Probab=90.75  E-value=0.62  Score=53.46  Aligned_cols=49  Identities=22%  Similarity=0.387  Sum_probs=39.0

Q ss_pred             ChhHHHhhhhhHHH-----HhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHh
Q 006448           95 DWNRWTRHFSEIEQ-----AESYASLLKFQLEDAIEREDFEEAANLKNAIAEAA  143 (644)
Q Consensus        95 dW~rW~rhF~~ve~-----~e~~~~~Lk~QLe~Av~~EDy~eAArLK~ai~~~~  143 (644)
                      +=+.|+..+..+..     -..++..|+.+|+.|.++.+||.||++|+.|.++.
T Consensus       156 ~~e~Y~~~v~~~~~fL~G~~~~~~~~L~~~M~~aa~~l~FE~Aa~~RD~i~al~  209 (574)
T PRK14670        156 LEKEYQKEVDKIKHILNGNISKLLSQIEIKMKEAIQKEDFEAAIKLKETKRSLI  209 (574)
T ss_pred             CHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            34567755555543     24677899999999999999999999999998876

>PRK07883 hypothetical protein; Validated

Probab=90.57  E-value=0.33  Score=55.11  Aligned_cols=47  Identities=19%  Similarity=0.347  Sum_probs=36.8

Q ss_pred             hHHHhhhhhHHH-----HhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHh
Q 006448           97 NRWTRHFSEIEQ-----AESYASLLKFQLEDAIEREDFEEAANLKNAIAEAA  143 (644)
Q Consensus        97 ~rW~rhF~~ve~-----~e~~~~~Lk~QLe~Av~~EDy~eAArLK~ai~~~~  143 (644)
                      +.++.+..++..     -..++..|+.+|+.|+++.+||.||++|+.|.+++
T Consensus       387 ~~Y~~~v~~~~~fL~G~~~~~~~~l~~~M~~aa~~l~FE~Aa~~Rd~i~~l~  438 (557)
T PRK07883        387 AEYAEAVARARAALTGDDDAVLAALRARIDRLAAAERFEEAARLRDRLAALL  438 (557)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            445544444432     23577999999999999999999999999998775

>TIGR00631 uvrb excinuclease ABC, B subunit

Probab=90.04  E-value=0.36  Score=55.84  Aligned_cols=36  Identities=28%  Similarity=0.416  Sum_probs=33.0

Q ss_pred             HHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 006448          107 EQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEA  142 (644)
Q Consensus       107 e~~e~~~~~Lk~QLe~Av~~EDy~eAArLK~ai~~~  142 (644)
                      ++.+.++..|+.+|..|+++.+||+||+||+.|.++
T Consensus       619 ~~~~~~i~~l~~~M~~aa~~l~FE~Aa~~RD~i~~L  654 (655)
T TIGR00631       619 KELKKLIKQLEKEMKQAARNLEFEEAARLRDEILEL  654 (655)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            567789999999999999999999999999999876

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)

>PRK05298 excinuclease ABC subunit B; Provisional

Probab=89.76  E-value=0.45  Score=54.80  Aligned_cols=37  Identities=32%  Similarity=0.443  Sum_probs=33.1

Q ss_pred             HHhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhc
Q 006448          108 QAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAAS  144 (644)
Q Consensus       108 ~~e~~~~~Lk~QLe~Av~~EDy~eAArLK~ai~~~~~  144 (644)
                      ..+.++..|+.+|..|+++.+||+||++|+.|.+++.
T Consensus       610 ~~~~~~~~l~~~M~~aa~~l~fE~Aa~~Rd~i~~l~~  646 (652)
T PRK05298        610 ELEKLIKELEKQMKEAAKNLEFEEAARLRDEIKELKE  646 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            4457889999999999999999999999999999874

>PRK12306 uvrC excinuclease ABC subunit C; Reviewed

Probab=89.40  E-value=0.46  Score=53.84  Aligned_cols=47  Identities=13%  Similarity=0.316  Sum_probs=36.4

Q ss_pred             hHHHhhhhhHHH-----HhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHh
Q 006448           97 NRWTRHFSEIEQ-----AESYASLLKFQLEDAIEREDFEEAANLKNAIAEAA  143 (644)
Q Consensus        97 ~rW~rhF~~ve~-----~e~~~~~Lk~QLe~Av~~EDy~eAArLK~ai~~~~  143 (644)
                      +.++.....+..     ...++..|+.+|+.|.++.+||+||++|+.|.++.
T Consensus       173 e~Y~~~v~~~~~fL~G~~~~~~~~L~~~M~~aa~~l~FE~Aa~~RD~l~~l~  224 (519)
T PRK12306        173 DEYLEQVKKAEEVLKGKIDELIEKLEEEMAEKAKNQQFERALVIRDEINAIE  224 (519)
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            455544444332     24567889999999999999999999999998876

>PRK00558 uvrC excinuclease ABC subunit C; Validated

Probab=88.79  E-value=0.53  Score=54.00  Aligned_cols=34  Identities=26%  Similarity=0.364  Sum_probs=30.7

Q ss_pred             hhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHh
Q 006448          110 ESYASLLKFQLEDAIEREDFEEAANLKNAIAEAA  143 (644)
Q Consensus       110 e~~~~~Lk~QLe~Av~~EDy~eAArLK~ai~~~~  143 (644)
                      ..++..|+.+|+.|+++.+||+||+||+.|.++.
T Consensus       201 ~~~i~~L~~~M~~aa~~l~FE~Aa~~RD~i~aL~  234 (598)
T PRK00558        201 DEVLKELEEKMEEASENLEFERAARYRDQIQALR  234 (598)
T ss_pred             HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence            3466889999999999999999999999998876

>PRK14667 uvrC excinuclease ABC subunit C; Provisional

Probab=88.36  E-value=0.57  Score=53.64  Aligned_cols=48  Identities=15%  Similarity=0.156  Sum_probs=37.7

Q ss_pred             hhHHHhhhhhHHH-----HhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHh
Q 006448           96 WNRWTRHFSEIEQ-----AESYASLLKFQLEDAIEREDFEEAANLKNAIAEAA  143 (644)
Q Consensus        96 W~rW~rhF~~ve~-----~e~~~~~Lk~QLe~Av~~EDy~eAArLK~ai~~~~  143 (644)
                      =+.|+.....+-.     ...++..|+.+|+.|+++.+||+||++|+.|.+++
T Consensus       179 ~e~Y~~~v~~~~~fL~G~~~~l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~  231 (567)
T PRK14667        179 KEDYELSVKSAKAFLSGNVKEVLPELYDKIEEYSQKLMFEKAAVIRDQILALE  231 (567)
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            3556655444432     24577899999999999999999999999998875

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]

Probab=88.31  E-value=0.65  Score=53.35  Aligned_cols=40  Identities=28%  Similarity=0.410  Sum_probs=35.5

Q ss_pred             HHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhcC
Q 006448          106 IEQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAASK  145 (644)
Q Consensus       106 ve~~e~~~~~Lk~QLe~Av~~EDy~eAArLK~ai~~~~~~  145 (644)
                      -.+.+.++..|+.||.+|++.-+||.||+||+.|.+++..
T Consensus       619 ~~e~~~~I~~Le~~M~~aA~~l~FE~Aa~lRD~i~~L~~~  658 (663)
T COG0556         619 KKELEKLIKKLEKEMKEAAKNLEFEEAARLRDEIKELKEE  658 (663)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            3566778899999999999999999999999999998753

>PRK14672 uvrC excinuclease ABC subunit C; Provisional

Probab=87.42  E-value=0.74  Score=53.94  Aligned_cols=49  Identities=20%  Similarity=0.361  Sum_probs=38.4

Q ss_pred             ChhHHHhhhhhHHH-----HhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHh
Q 006448           95 DWNRWTRHFSEIEQ-----AESYASLLKFQLEDAIEREDFEEAANLKNAIAEAA  143 (644)
Q Consensus        95 dW~rW~rhF~~ve~-----~e~~~~~Lk~QLe~Av~~EDy~eAArLK~ai~~~~  143 (644)
                      +=+.|+....++..     -..++..|+.+|+.|+++.+||.||++|+.|.+++
T Consensus       184 s~e~Y~~~V~~v~~fL~G~~~~ll~~L~~~M~~AA~~l~FE~AA~lRD~i~aL~  237 (691)
T PRK14672        184 SPRTYQKDIHEITLLLEGNIDATVARLEKRMKRAVRQEAFEAAARIRDDIQAIR  237 (691)
T ss_pred             CHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            34567755555443     23567899999999999999999999999998876

>PRK14669 uvrC excinuclease ABC subunit C; Provisional

Probab=86.86  E-value=0.83  Score=52.94  Aligned_cols=47  Identities=19%  Similarity=0.292  Sum_probs=37.5

Q ss_pred             hHHHhhhhhHHH-----HhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHh
Q 006448           97 NRWTRHFSEIEQ-----AESYASLLKFQLEDAIEREDFEEAANLKNAIAEAA  143 (644)
Q Consensus        97 ~rW~rhF~~ve~-----~e~~~~~Lk~QLe~Av~~EDy~eAArLK~ai~~~~  143 (644)
                      +.++.....+..     ...++..|+.+|+.|+++.+||+||++|+.|.+++
T Consensus       184 e~Y~~~v~~v~~fL~G~~~~l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~  235 (624)
T PRK14669        184 EAYAEAVRDVRLFLEGRHSDLARSLRARMEAAALEMQFELAAKYRDLITTVE  235 (624)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            556655454443     24677899999999999999999999999998865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	644
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 8e-07
 Identities = 71/627 (11%), Positives = 155/627 (24%), Gaps = 231/627 (36%)

Query: 102 HFSEIEQAE---SYASLLKFQLEDAIEREDFEEAAN-LKNAIAEAASKDTVAEIMAQLKN 157
           H  + E  E    Y  +L    +  ++  D ++  +  K+ +    SK+ +  I+   K+
Sbjct: 5   HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSIL----SKEEIDHII-MSKD 59

Query: 158 AIDEERY-------HDASRLCRYTGSGL---VGW-WVGYSKDSDDPFGR----------- 195
           A+                 + ++    L     +       +   P              
Sbjct: 60  AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119

Query: 196 ------------------------LIQIKP----------GVGR-----FVARNYSPRQL 216
                                   L++++P          G G+      V  +Y    +
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK---V 176

Query: 217 VTASPGTPLFEIFVVK----DNEESYVMQVVHLKQAKGTSTNSTSSPSKSTKSPSTS--- 269
                    F+IF +     ++ E+ +  +  L      +  S S  S + K    S   
Sbjct: 177 QCKMD----FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 270 -------------------EVENASVVD--------------------VQGTKVKEERSD 290
                               V+NA   +                    +          D
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 291 EKGINIEGVTEEGIKSVI-NFLKEKIPGLKVKVMNID------ITAEVTDDADSLKQLIQ 343
               +   +T + +KS++  +L  +   L  +V+  +      I   + D   +      
Sbjct: 293 H---HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349

Query: 344 DGEEAESSDSEGEADDIEEIQPDEVALEGANEASEDEKEL--DTKVFIGGVVHNNEDAPT 401
              +  ++  E     +  ++P E             +++     VF             
Sbjct: 350 VNCDKLTTIIE---SSLNVLEPAEY------------RKMFDRLSVF------------- 381

Query: 402 KDEYVRMPADVKDLEKDSFVLHVPAKSL-------DYDHTGESKMSKLKVAALAAQGVSE 454
                  P              +P   L                ++KL   +L  +   E
Sbjct: 382 -------PPSAH----------IPTILLSLIWFDVIKSDV-MVVVNKLHKYSLVEKQPKE 423

Query: 455 L------MPFDVAKAFWSSDKASSKAQKQSRLSE-YTTFSRINTSEGDLDPFDGLYVGAF 507
                  +  ++        K  ++      + + Y      ++ +      D  Y  + 
Sbjct: 424 STISIPSIYLELKV------KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ-YFYSH 476

Query: 508 GPYGTEVVQLRRKYGQWSGEGEKSSDMEFFEYVEAVKLTGDLNVPAGEVTF-RAKI-GKG 565
             +      L+          E    M  F       +  D         F   KI    
Sbjct: 477 IGH-----HLK--------NIEHPERMTLFR-----MVFLDFR-------FLEQKIRHDS 511

Query: 566 SRLPNRGKFPDELGVVASYSGQGRIAD 592
           +     G   + L  +  Y  +  I D
Sbjct: 512 TAWNASGSILNTLQQLKFY--KPYICD 536

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	644
1e52_A	63	Excinuclease ABC subunit; DNA excision repair, UVR	96.83
2d7d_A	661	Uvrabc system protein B; helicase, protein-DNA-ADP	92.87
1c4o_A	664	DNA nucleotide excision repair enzyme UVRB; uvrabc	88.11
1e52_A	63	Excinuclease ABC subunit; DNA excision repair, UVR	85.44

>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*

Probab=92.87  E-value=0.065  Score=59.39  Aligned_cols=38  Identities=21%  Similarity=0.415  Sum_probs=27.5

Q ss_pred             HHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhc
Q 006448          107 EQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAAS  144 (644)
Q Consensus       107 e~~e~~~~~Lk~QLe~Av~~EDy~eAArLK~ai~~~~~  144 (644)
                      ++...++..|+.+|.+|++.+|||+||+||+.|.+++.
T Consensus       622 ~~~~~~i~~l~~~m~~aa~~~~fe~Aa~~Rd~i~~l~~  659 (661)
T 2d7d_A          622 KERQKVVEQMEHEMKEAAKALDFERAAELRDLLLELKA  659 (661)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHh
Confidence            35566778888888888888889999888888888764

>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*

Probab=88.11  E-value=0.094  Score=58.15  Aligned_cols=39  Identities=28%  Similarity=0.373  Sum_probs=0.0

Q ss_pred             HHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhcC
Q 006448          107 EQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAASK  145 (644)
Q Consensus       107 e~~e~~~~~Lk~QLe~Av~~EDy~eAArLK~ai~~~~~~  145 (644)
                      ++.+..+..|+.+|.+|++.++||.||+||+.|.+++..
T Consensus       607 ~~~~~~i~~l~~~m~~aa~~l~fe~Aa~lRd~i~~l~~~  645 (664)
T 1c4o_A          607 EDLRERIAELELAMWQAAEALDFERAARLRDEIRALEAR  645 (664)
T ss_dssp             ---------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence            456777888999999999999999999999999888754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	644
d1e52a_	56	C-terminal UvrC-binding domain of UvrB {Escherichi	96.79
d1e52a_	56	C-terminal UvrC-binding domain of UvrB {Escherichi	82.61

>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: C-terminal UvrC-binding domain of UvrB
family: C-terminal UvrC-binding domain of UvrB
domain: C-terminal UvrC-binding domain of UvrB
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.00053  Score=53.38  Aligned_cols=37  Identities=16%  Similarity=0.230  Sum_probs=34.0

Q ss_pred             HHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHh
Q 006448          107 EQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAA  143 (644)
Q Consensus       107 e~~e~~~~~Lk~QLe~Av~~EDy~eAArLK~ai~~~~  143 (644)
                      ++.+..+..|+.+|..|+++.||++||+||+.|.+++
T Consensus        13 ~el~k~i~~Le~~M~~aa~~l~FE~AA~~RD~I~~l~   49 (56)
T d1e52a_          13 KALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR   49 (56)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence            4567889999999999999999999999999999886

>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: C-terminal UvrC-binding domain of UvrB
family: C-terminal UvrC-binding domain of UvrB
domain: C-terminal UvrC-binding domain of UvrB
species: Escherichia coli [TaxId: 562]

Probab=82.61  E-value=0.29  Score=37.53  Aligned_cols=26  Identities=8%  Similarity=0.224  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhcc
Q 006448          148 VAEIMAQLKNAIDEERYHDASRLCRY  173 (644)
Q Consensus       148 V~~~~~~Lk~AI~EERY~DAA~lRD~  173 (644)
                      +-.+..+++.|.++.+|+.||+|||.
T Consensus        19 i~~Le~~M~~aa~~l~FE~AA~~RD~   44 (56)
T d1e52a_          19 IHELEGLMMQHAQNLEFEEAAQIRDQ   44 (56)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHTTHHHH
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            45677899999999999999999996