Citrus Sinensis ID: 006469

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640----
Protein Sequence
MEAPLGGSDRDKPNTSSSSPVSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYNLLYLFLFS
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccccccHHHHccccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHEEEEEc
Coil and Loop (DISEMBL)
meaplggsdrdkpntsssspvsvisNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLyeapdpypalASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSandeagsrnsdtldsnsyleNSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELqarptskmVDDLRKKVKILQAVGynsieaedwevatndEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILkgysskdrkgnvfddwdlseaggtelsekadkkhtypdqdqssMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMyeddinpfaafskkERDQRYKELGIRDRITLSSGRFLLGNKYNLLYLFLFS
Flexible Loop (DISEMBL)
meaplggsdrdkpntsssspvsvisnFWKDFDLEKEKSLLDELGLKiaenqensqknrRKLAEstrdfkkaspeeKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEeyrteathlknqqstirRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQsandeagsrnsdtldsnsYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKelqarptskmvddlRKKVKILqavgynsieaedwevatndEEMSKMESLLLDKNRKMEHELTqlkvklsektslLETAEGKIAELTAKINEQQKLIQKLEDDILKgysskdrkgnvfddwdlseaggtelsekadkkhtypdqdqssmlkvICNQRDRFRARLRETEEEVRQLKekigvltaelektkadnvqlygkirfvqdynnekvisrgskkyaedlesgftsDIESKYKKMYEDDInpfaafskkerdqrykelgirdritlssgrfllgnkynllylflfs
Low Complexity Region (SEG)
MEAPLGGSDRDKPNTsssspvsvisNFWkdfdlekekslldelglkIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIrrleernrqleqqmeekvkeiveikqRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYNLLYLFLFS
Disordered region (IsUnstruct)
**********************VISNFWKDFDLE********************************************LFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALA****************************************************************************************************************************************************************************************************************************LL*************************LRKKVKILQAVGYNSIEAEDWEV**********************************************************LIQKL**DIL**********************************************VICN******************LKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNEKVIS************************MYEDDINPFAAF*******RYKELGIRDRITLSSGRFLLGNKYNLLYLFLF*
Disordered Region (DISOPRED)
*************************NFWKDFDLEK**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************INPF******************DRITLSSGRFLLGNKYNLLYLFLFS
Disordered Region (DISEMBL)
*********************SVISNFWKDFDLEKEKSLLDELGLKIAENQ**********************EEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVR********AKQSEVNLLMDEVERAQTRLLSLQREKDLLRS****************LDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTE***************QSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYNLLYLFLFS
Disordered Region (DISPRO)
******************SPVSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN**************SYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYN****************SKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS*************************************SSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYN*********************SDIESKYKKMYEDDINPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYNLLYLFLFS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEAPLGGSDRDKPNTSSSSPVSVISNFWKDFDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRDFKKASPEEKxxxxxxxxxxxxxxxxxxxxxxxxxxxxFLNIYQKLYEAPDPYPALASxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHELAQSQLFEVRAQSDEERVAKQSExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGSRNSDTLDSNSYLENSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYNLLYLFLFS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	644	2.2.26 [Sep-21-2011]
Q9LS42	689	Protein CASP OS=Arabidops	yes	no	1.0	0.934	0.791	0.0
Q13948	678	Protein CASP OS=Homo sapi	yes	no	0.933	0.886	0.316	5e-76
Q5R8V1	678	Protein CASP OS=Pongo abe	yes	no	0.933	0.886	0.313	1e-75
P70403	678	Protein CASP OS=Mus muscu	yes	no	0.933	0.886	0.310	2e-74
P39880	1505	Homeobox protein cut-like	no	no	0.583	0.249	0.324	4e-42
P53564	1515	Homeobox protein cut-like	no	no	0.583	0.248	0.318	5e-41
P34237	679	Protein CASP OS=Saccharom	yes	no	0.891	0.845	0.268	1e-35
O59795	633	Protein CASP OS=Schizosac	yes	no	0.840	0.854	0.267	1e-30
O14529	1486	Homeobox protein cut-like	no	no	0.610	0.264	0.282	2e-25
Q8IA98	621	Protein CASP OS=Caenorhab	yes	no	0.880	0.913	0.204	2e-17

>sp|Q9LS42|CASP_ARATH Protein CASP OS=Arabidopsis thaliana GN=CASP PE=1 SV=2

 Score = 1035 bits (2676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/649 (79%), Positives = 585/649 (90%), Gaps = 5/649 (0%)

Query: 1   MEAPLGGSDRDKPNTSSSSP-----VSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQ 55
           ME    GS+RDK    SSS      + V++NFWK+FDLEKEKSLLDE GL+IAENQENSQ
Sbjct: 1   MEVSQDGSERDKTPPPSSSSSSSSPIPVVTNFWKEFDLEKEKSLLDEQGLRIAENQENSQ 60

Query: 56  KNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEA 115
           KNRRKLAESTRDFKKASPE KLS+FNSLLKGYQEEVDN+TKRAKFGENAFLNIYQKLYEA
Sbjct: 61  KNRRKLAESTRDFKKASPENKLSMFNSLLKGYQEEVDNITKRAKFGENAFLNIYQKLYEA 120

Query: 116 PDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQ 175
           PDP+PALASIAEQD KLSE+ESENRKMK+ELEE+RTEATHLKNQQ+TIRRLEERNRQLEQ
Sbjct: 121 PDPFPALASIAEQDRKLSEVESENRKMKVELEEFRTEATHLKNQQATIRRLEERNRQLEQ 180

Query: 176 QMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQL 235
           QMEEK+KE+VEIKQR LAEENQKT+E+L++REQALQDQLRQAKDSV+TMQKLHELAQ+QL
Sbjct: 181 QMEEKIKEVVEIKQRNLAEENQKTMELLKDREQALQDQLRQAKDSVSTMQKLHELAQNQL 240

Query: 236 FEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDT 295
           FE+RAQSDEE   KQSEV+LLMDEVERAQTRLL+L+REK  LRSQLQ+AN++  ++ SD 
Sbjct: 241 FELRAQSDEETAGKQSEVSLLMDEVERAQTRLLTLEREKGHLRSQLQTANEDTDNKKSDN 300

Query: 296 LDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDM 355
           +DSNS LENSL+AKEKIISELN E+HN+ETAL+NERE H+ EIKKLN+LL +K+  +E+M
Sbjct: 301 IDSNSMLENSLTAKEKIISELNMEIHNVETALANERESHVAEIKKLNSLLNKKDTIIEEM 360

Query: 356 KKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKME 415
           KKELQ RP++K+VDDLRKKVKILQAVGYNSIEAEDW+ AT  EEMSKMESLLLDKNRKME
Sbjct: 361 KKELQERPSAKLVDDLRKKVKILQAVGYNSIEAEDWDAATTGEEMSKMESLLLDKNRKME 420

Query: 416 HELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFD 475
           HE+TQLKV+LSEK SLLE AE K  ELTAK+NEQQ+LIQKLEDDILKGY SK+RKG +FD
Sbjct: 421 HEVTQLKVQLSEKASLLEKAEAKGEELTAKVNEQQRLIQKLEDDILKGYGSKERKGALFD 480

Query: 476 DWDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIG 535
           +W+ SEAG  E SE  D+KH   +QDQSSMLKVIC+QRDRFRARLRETEEE+R+LKEKIG
Sbjct: 481 EWEFSEAGVAEQSEPMDQKHVPSEQDQSSMLKVICSQRDRFRARLRETEEEIRRLKEKIG 540

Query: 536 VLTAELEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYE 595
            LT ELEKTKADNV+LYGKIR+VQDYN++KV+SRGSKKY EDLESGF+SD+ESKYKK+YE
Sbjct: 541 FLTDELEKTKADNVKLYGKIRYVQDYNHDKVVSRGSKKYVEDLESGFSSDVESKYKKIYE 600

Query: 596 DDINPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYNLLYLFLFS 644
           DDINPFAAFSKKER+QR K+LGIRDRITLSSGRFLLGNKY   + F ++
Sbjct: 601 DDINPFAAFSKKEREQRIKDLGIRDRITLSSGRFLLGNKYARTFAFFYT 649

May be involved in intra-Golgi transport.
Arabidopsis thaliana (taxid: 3702)

>sp|Q13948|CASP_HUMAN Protein CASP OS=Homo sapiens GN=CUX1 PE=1 SV=2

 Score =  285 bits (730), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 204/644 (31%), Positives = 352/644 (54%), Gaps = 43/644 (6%)

Query: 21  VSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLF 80
           V  +  +WK FDL++ +  LD     +A  Q+ S+++R++L E +R+FKK +PE+     
Sbjct: 5   VGSMFQYWKRFDLQQLQRELDATATVLANRQDESEQSRKRLIEQSREFKKNTPEDLRKQV 64

Query: 81  NSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLK---LSELES 137
             LLK +Q E+D L+KR+K  E AFLN+Y++L + PDP PAL    +  LK   L ++E+
Sbjct: 65  APLLKSFQGEIDALSKRSKEAEAAFLNVYKRLIDVPDPVPALDLGQQLQLKVQRLHDIET 124

Query: 138 ENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQ 197
           EN+K++  LEEY  E   +KNQ+ TI+ L+E+ R+ EQ ++ + + I   K++ L  +  
Sbjct: 125 ENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREYEQTLKNQAETIALEKEQKLQNDFA 184

Query: 198 KTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLM 257
           +    LQE + +   +L +A+  V ++Q   E  +++LF+++ + DEE  AK  E+ ++M
Sbjct: 185 EKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRTELFDLKTKYDEETTAKADEIEMIM 244

Query: 258 DEVERAQTRLLSLQREKDLLRSQLQSAND--EAGSRNSDTLD--------SNSYLENSLS 307
            ++ERA  R    QRE + LR QL SAN   +  S+     D        + S LE  L+
Sbjct: 245 TDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQAIEVLTRSSLEVELA 304

Query: 308 AKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKM 367
           AKE+ I++L  ++  ++ +L+  RE   ++I +L   L  K + L+ ++++L+ +     
Sbjct: 305 AKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKGQAD--- 361

Query: 368 VDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSE 427
            ++++K++ IL+++ +   E      A   +    +E LLL+KNR ++ E   L++  S+
Sbjct: 362 YEEVKKELNILKSMEFAPSEG-----AGTQDAAKPLEVLLLEKNRSLQSENAALRISNSD 416

Query: 428 KTSLLETAEGKIAELTAKINEQQKLIQKLEDD--ILKGYSSKDRKGNVFDDWD-----LS 480
            +      + +I E  A   EQ++LI +LE D  I++     D +G      +     + 
Sbjct: 417 LSGRCAELQVRITEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIK 476

Query: 481 EAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAE 540
           EA        A      P+    S+L +I +QR+RFRAR +E E E R  +  +  L +E
Sbjct: 477 EATALFYGPAAPASGALPEGQVDSLLSIISSQRERFRARNQELEAENRLAQHTLQALQSE 536

Query: 541 LEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINP 600
           L+  +ADN++L+ KI+F+Q Y       RGS           + D E +Y   YE+ ++P
Sbjct: 537 LDSLRADNIKLFEKIKFLQSYPG-----RGSG----------SDDTELRYSSQYEERLDP 581

Query: 601 FAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYNLLYLFLFS 644
           F++FSK+ER ++Y  L   D+ TLS GR +L NK      F ++
Sbjct: 582 FSSFSKRERQRKYLSLSPWDKATLSMGRLVLSNKMARTIGFFYT 625

May be involved in intra-Golgi retrograde transport.

Homo sapiens (taxid: 9606)

>sp|Q5R8V1|CASP_PONAB Protein CASP OS=Pongo abelii GN=CUTL1 PE=2 SV=1

 Score =  284 bits (727), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 202/644 (31%), Positives = 352/644 (54%), Gaps = 43/644 (6%)

Query: 21  VSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLF 80
           V  +  +WK FDL++ +  LD     +A  Q+ S+++R++L E +R+FKK +PE+     
Sbjct: 5   VGSMFQYWKRFDLQQLQRELDATATVLANRQDESEQSRKRLIEQSREFKKNTPEDLRKQV 64

Query: 81  NSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLK---LSELES 137
             LLK +Q E+D L+KR+K  E AFLN+Y++L + PDP PAL    +  LK   L ++E+
Sbjct: 65  APLLKSFQGEIDALSKRSKEAEAAFLNVYKRLIDVPDPVPALDLGQQLQLKVQRLHDIET 124

Query: 138 ENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQ 197
           EN+K++  LEEY  E   +KNQ+ TI+ L+E+ R+ EQ ++ + + I   K++ L  +  
Sbjct: 125 ENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREYEQTLKNQAETIALEKEQKLQNDFA 184

Query: 198 KTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLM 257
           +    LQE + +   +L +A+  V ++Q   E  +++LF+++ + DEE  AK  E+ ++M
Sbjct: 185 EKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRTELFDLKTKYDEETTAKADEIEMIM 244

Query: 258 DEVERAQTRLLSLQREKDLLRSQLQSAND--EAGSRNSDTLD--------SNSYLENSLS 307
            ++ERA  R    QRE + LR QL SAN   +  S+     D        + S LE  L+
Sbjct: 245 TDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQAIEVLTRSSLEVELA 304

Query: 308 AKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKM 367
           AKE+ I++L  ++  ++ +L+  RE   ++I +L   L  K + L+ ++++L+ +     
Sbjct: 305 AKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKGQAD--- 361

Query: 368 VDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSE 427
            ++++K++ IL+++ +   E      A   +    +E LLL+KNR ++ E   L++  S+
Sbjct: 362 YEEVKKELNILKSMEFAPSEG-----AGTQDAAKPLEVLLLEKNRSLQSENAALRISNSD 416

Query: 428 KTSLLETAEGKIAELTAKINEQQKLIQKLEDD--ILKGYSSKDRKGNVFDDWD-----LS 480
            +      + ++ E  A   EQ++LI +LE D  I++     D +G      +     + 
Sbjct: 417 LSGRCAELQVRVTEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIK 476

Query: 481 EAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAE 540
           EA        A      P+    S+L +I +QR+RFRAR +E E E R  +  +  L +E
Sbjct: 477 EATALFYGPTAPASGALPEGQVDSLLSIISSQRERFRARNQELEAENRLAQHTLQALQSE 536

Query: 541 LEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINP 600
           L+  +ADN++L+ KI+F+Q Y       RGS           + D E +Y   YE+ ++P
Sbjct: 537 LDSLRADNIKLFEKIKFLQSYPG-----RGSG----------SDDTELRYSSQYEERLDP 581

Query: 601 FAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYNLLYLFLFS 644
           F++FSK+ER ++Y  +   D+ TLS GR +L NK      F ++
Sbjct: 582 FSSFSKRERQRKYLSMSPWDKATLSMGRLVLSNKMARTIGFFYT 625

May be involved in intra-Golgi retrograde transport.

Pongo abelii (taxid: 9601)

>sp|P70403|CASP_MOUSE Protein CASP OS=Mus musculus GN=Cux1 PE=2 SV=2

 Score =  280 bits (717), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 200/644 (31%), Positives = 350/644 (54%), Gaps = 43/644 (6%)

Query: 21  VSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLF 80
           V  +S +WK FDL++ +  LD     +A  Q+ S+++R++L E +R+FKK +PE+     
Sbjct: 5   VGSMSQYWKRFDLQQLQRELDAAATVLANRQDESEQSRKRLIEQSREFKKNTPEDLRKQV 64

Query: 81  NSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLK---LSELES 137
             LLK +Q E+D L+KR+K  E AFL +Y++L + PDP PAL    + ++K   L ++E+
Sbjct: 65  APLLKSFQGEIDALSKRSKEAEAAFLTVYKRLIDVPDPVPALDVGQQLEIKVQRLHDIET 124

Query: 138 ENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQ 197
           EN+K++  LEEY  E   +KNQ+ TI+ L+E+ R+ EQ ++ + + I   K++ L  +  
Sbjct: 125 ENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREYEQTLKSQAETIALEKEQKLQNDFA 184

Query: 198 KTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLM 257
           +    LQE + +   +L +A+  + T+Q   E  +++LF+++ + DEE  AK  E+ ++M
Sbjct: 185 EKERKLQETQMSTTSKLEEAEHKLQTLQTALEKTRTELFDLKTKYDEETTAKADEIEMIM 244

Query: 258 DEVERAQTRLLSLQREKDLLRSQLQSAND--EAGSRNSDTLD--------SNSYLENSLS 307
            ++ERA  R    QRE + LR QL SAN   +  S+     D        + S LE  L+
Sbjct: 245 TDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQAIEVLTRSSLEVELA 304

Query: 308 AKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKM 367
           AKE+ I++L  ++  ++ +L+  RE   ++I +L   L  K + L+ ++++L+ +     
Sbjct: 305 AKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLNAKNSTLKQLEEKLKGQAD--- 361

Query: 368 VDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSE 427
            ++++K++  L+++ +   E      A   +    +E LLL+KNR ++ E   L++  S+
Sbjct: 362 YEEVKKELNTLKSMEFAPSEG-----AGTQDSTKPLEVLLLEKNRSLQSENATLRISNSD 416

Query: 428 KTSLLETAEGKIAELTAKINEQQKLIQKLEDDI--LKGYSSKDRKGNVFDDWD-----LS 480
            +      +  + E TAK  EQ++LI +LE D+  ++     D +G      +     + 
Sbjct: 417 LSGRCAELQIHLTEATAKAVEQKELIARLEQDLSTIQSIQRPDAEGASEQGLEKIPEPIK 476

Query: 481 EAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAE 540
           EA             T P+    S+L +I +QR+RFR R +E E E R  +  I  L +E
Sbjct: 477 EATALFYGPSMSSSGTLPEGQVDSLLSIISSQRERFRTRNQELEAESRMAQHTIQALQSE 536

Query: 541 LEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINP 600
           L+  +ADN++L+ KI+F+Q Y    +   GS             D E +Y   YE+ ++P
Sbjct: 537 LDSLRADNIKLFEKIKFLQSYPGRGI---GS------------DDTELRYSSQYEERLDP 581

Query: 601 FAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYNLLYLFLFS 644
           F++FSK+ER ++Y  L   D+ TL  GR +L NK      F ++
Sbjct: 582 FSSFSKRERQRKYLGLSPWDKATLGMGRLILSNKTARTIGFFYT 625

May be involved in intra-Golgi retrograde transport.

Mus musculus (taxid: 10090)

>sp|P39880|CUX1_HUMAN Homeobox protein cut-like 1 OS=Homo sapiens GN=CUX1 PE=1 SV=3

 Score =  173 bits (439), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 129/397 (32%), Positives = 228/397 (57%), Gaps = 21/397 (5%)

Query: 40  LDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAK 99
           LD     +A  Q+ S+++R++L E +R+FKK +PE+       LLK +Q E+D L+KR+K
Sbjct: 13  LDATATVLANRQDESEQSRKRLIEQSREFKKNTPEDLRKQVAPLLKSFQGEIDALSKRSK 72

Query: 100 FGENAFLNIYQKLYEAPDPYPALASIAEQDLK---LSELESENRKMKIELEEYRTEATHL 156
             E AFLN+Y++L + PDP PAL    +  LK   L ++E+EN+K++  LEEY  E   +
Sbjct: 73  EAEAAFLNVYKRLIDVPDPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEV 132

Query: 157 KNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQ 216
           KNQ+ TI+ L+E+ R+ EQ ++ + + I   K++ L  +  +    LQE + +   +L +
Sbjct: 133 KNQEVTIKALKEKIREYEQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEE 192

Query: 217 AKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDL 276
           A+  V ++Q   E  +++LF+++ + DEE  AK  E+ ++M ++ERA  R    QRE + 
Sbjct: 193 AEHKVQSLQTALEKTRTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAET 252

Query: 277 LRSQLQSAND--EAGSRNSDTLD--------SNSYLENSLSAKEKIISELNSELHNIETA 326
           LR QL SAN   +  S+     D        + S LE  L+AKE+ I++L  ++  ++ +
Sbjct: 253 LREQLSSANHSLQLASQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQAS 312

Query: 327 LSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSI 386
           L+  RE   ++I +L   L  K + L+ ++++L+ +      ++++K++ IL+     S+
Sbjct: 313 LTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKGQ---ADYEEVKKELNILK-----SM 364

Query: 387 EAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKV 423
           E    E A   +    +E LLL+KNR ++ E   L++
Sbjct: 365 EFAPSEGAGTQDAAKPLEVLLLEKNRSLQSENAALRI 401

Probably has a broad role in mammalian development as a repressor of developmentally regulated gene expression. May act by preventing binding of positively-activing CCAAT factors to promoters. Component of nf-munr repressor; binds to the matrix attachment regions (MARs) (5' and 3') of the immunoglobulin heavy chain enhancer. Represses T-cell receptor (TCR) beta enhancer function by binding to MARbeta, an ATC-rich DNA sequence located upstream of the TCR beta enhancer.

Homo sapiens (taxid: 9606)

>sp|P53564|CUX1_MOUSE Homeobox protein cut-like 1 OS=Mus musculus GN=Cux1 PE=1 SV=3

 Score =  169 bits (429), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 126/395 (31%), Positives = 227/395 (57%), Gaps = 19/395 (4%)

Query: 40  LDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAK 99
           LD     +A  Q+ S+++R++L E +R+FKK +PE+       LLK +Q E+D L+KR+K
Sbjct: 13  LDATATVLANRQDESEQSRKRLIEQSREFKKNTPEDLRKQVAPLLKSFQGEIDALSKRSK 72

Query: 100 FGENAFLNIYQKLYEAPDPYPALASIAEQDLK---LSELESENRKMKIELEEYRTEATHL 156
             E AFL +Y++L + PDP PAL    + ++K   L ++E+EN+K++  LEEY  E   +
Sbjct: 73  EAEAAFLTVYKRLIDVPDPVPALDVGQQLEIKVQRLHDIETENQKLRETLEEYNKEFAEV 132

Query: 157 KNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQ 216
           KNQ+ TI+ L+E+ R+ EQ ++ + + I   K++ L  +  +    LQE + +   +L +
Sbjct: 133 KNQEVTIKALKEKIREYEQTLKSQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEE 192

Query: 217 AKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDL 276
           A+  + T+Q   E  +++LF+++ + DEE  AK  E+ ++M ++ERA  R    QRE + 
Sbjct: 193 AEHKLQTLQTALEKTRTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAET 252

Query: 277 LRSQLQSAND--EAGSRNSDTLD------SNSYLENSLSAKEKIISELNSELHNIETALS 328
           LR QL SAN   +  S+     D      + S LE  L+AKE+ I++L  ++  ++ +L+
Sbjct: 253 LREQLSSANHSLQLASQIQKAPDVAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLT 312

Query: 329 NEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEA 388
             RE   ++I +L   L  K + L+ ++++L+ +      ++++K++  L+     S+E 
Sbjct: 313 KLRENSASQISQLEQQLNAKNSTLKQLEEKLKGQ---ADYEEVKKELNTLK-----SMEF 364

Query: 389 EDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKV 423
              E A   +    +E LLL+KNR ++ E   L++
Sbjct: 365 APSEGAGTQDSTKPLEVLLLEKNRSLQSENATLRI 399

Probably has a broad role in mammalian development as a repressor of developmentally regulated gene expression. May act by preventing binding of positively-activing CCAAT factors to promoters. Component of nf-munr repressor; binds to the matrix attachment regions (MARs) (5' and 3') of the immunoglobulin heavy chain enhancer. Represses T-cell receptor (TCR) beta enhancer function by binding to MARbeta, an ATC-rich DNA sequence located upstream of the TCR beta enhancer.

Mus musculus (taxid: 10090)

>sp|P34237|CASP_YEAST Protein CASP OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=COY1 PE=1 SV=2

 Score =  151 bits (382), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 175/652 (26%), Positives = 327/652 (50%), Gaps = 78/652 (11%)

Query: 26  NFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLK 85
           + W   DL   +  LD   ++I + +  S  +R+ LA  T+ FKK  PEEKL+  N ++K
Sbjct: 11  DIWAKADLTNLQRELDADVIEIKDKETLSLNSRKSLATETKKFKKLEPEEKLNNVNKIIK 70

Query: 86  GYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIE 145
            YQ E+DNLT+R+KF E    ++Y+KL EAPDP P L S  E+  K+   +S+  K KI 
Sbjct: 71  QYQREIDNLTQRSKFSEKVLFDVYEKLSEAPDPQPLLQSSLEKLGKID--DSKELKEKIS 128

Query: 146 -LEEYRTEATHLKNQQSTIRRLEERN-RQLEQQMEEKVKEI---VEIKQRGLAEENQ--- 197
            LE+   +    +  +S +  LE+ + + L +++  K +EI    E K R   E      
Sbjct: 129 YLEDKLAKYADYETLKSRLLDLEQSSAKTLAKRLTAKTQEINSTWEEKGRNWKEREADLL 188

Query: 198 KTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLM 257
           K L  +QE+ +AL+ ++ +  D      +  +   +Q         +E   + +E NL+ 
Sbjct: 189 KQLTNVQEQNKALEAKISKNIDIEGNGNEDGDQENNQ---------KEVSTRIAEYNLVT 239

Query: 258 DEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELN 317
            E+E  Q R+  L++  + L   L  A  EA              E  L AKE  +++L 
Sbjct: 240 QELETTQARIYQLEKRNEELSGALAKATSEAEK------------ETELHAKELKLNQLE 287

Query: 318 SELHNIETALSNERE---QHMNEIK-KLNALLIEKEAA---LEDMKKELQARP-TSKMVD 369
           SE   +  +   ER+     +NE+K +LN+++ E E+    LE ++++L      +K+ +
Sbjct: 288 SENALLSASYEQERKSTSHAINELKEQLNSVVAESESYKSELETVRRKLNNYSDYNKIKE 347

Query: 370 DLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKT 429
           +L    KI    G N  ++ D ++ + D+  +  ES LL  N+K++  L + + K + + 
Sbjct: 348 ELSALKKI--EFGVNEDDS-DNDIRSEDKNDNTFESSLLSANKKLQATLAEYRSKSTAQE 404

Query: 430 SLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSE 489
                 +  + +L  +I   ++  +KLE D+       ++  NV   ++ + +  + ++ 
Sbjct: 405 EERNELKKSVDQLKQQIATLKEANEKLETDL-------EKVENVSPHFNETASMMSGVTR 457

Query: 490 KADKKHTY-----------PDQ-----DQSSMLKVICNQRDRFRARLRETEEEVRQLKEK 533
           + + + ++           P+      +QS++L ++  QRDRFR+R  + E+++RQ   +
Sbjct: 458 QMNNRTSHKMSPTSSIIGIPEDGELSGNQSTILPIVTKQRDRFRSRNMDLEKQLRQGNSE 517

Query: 534 IGVLTAELEKTKADNVQLYGKIRFVQDYNNEKV-ISRGSKKYAEDLESGFTSDIESKYKK 592
            G L  E+ K K DN +LY +IR++Q YNN    +++ +++           D+ES+Y +
Sbjct: 518 KGKLKLEISKLKGDNTKLYERIRYLQSYNNNNAPVNQSTERI----------DVESQYSR 567

Query: 593 MYEDDINPFAAFSKKERDQ-RYKELGIRDRITLSSGRFLLGNKYNLLYLFLF 643
           +Y++ ++P A F + E +  + K+L   +++  S  + +L NK   + +FLF
Sbjct: 568 VYDESLHPMANFRQNELNHYKNKKLSALEKLFSSFAKVILQNKMTRM-VFLF 618

May be involved in intra-Golgi transport.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O59795|CASP_SCHPO Protein CASP OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=coy1 PE=3 SV=1

 Score =  135 bits (339), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 166/621 (26%), Positives = 294/621 (47%), Gaps = 80/621 (12%)

Query: 51  QENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQ 110
           Q+ S   R++L+  T++F+K   E KL     LLK YQ  +D+LTKRAK  E  F  +Y+
Sbjct: 39  QKTSLDERKELSSKTKEFRKQPDEVKLGEMKGLLKLYQSGIDSLTKRAKSAEATFFRVYE 98

Query: 111 KLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERN 170
            L E PDPYP L   A            N K + ++E+ + E   ++       +LE   
Sbjct: 99  TLGEVPDPYPLLIEAA-----------NNLKTQKQIEDLKKEKEEMEGSLQGKEKLEREV 147

Query: 171 RQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKL--- 227
             L +++ +K K++VE +    A   ++  E     +Q L   + Q  ++ +T+QKL   
Sbjct: 148 ENLRKEL-DKYKDLVETEAEKRAAITKEECEKSWLEQQKLYKDMEQ--ENASTIQKLTSK 204

Query: 228 -HELAQSQL-FEVRAQSDEERV----AKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQL 281
             EL  SQL  +++A  +E       AK +EVN ++ E++ A   ++ LQ E  +L+   
Sbjct: 205 IRELQASQLDHDLQASQNESAGLDVNAKSAEVNAILSELDDANKIIVELQAEIAVLK--- 261

Query: 282 QSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKL 341
           Q+  ++    + D L +    +  L   + +  +L++EL +I+ A   E E H   I+ L
Sbjct: 262 QNTKEQKSGSSQDDLSNQQ--KQQLDFMDSLNKKLSTELESIKEASRKEMETHCATIQTL 319

Query: 342 NALLIEKEAALEDMKKELQARPTSKM--VDDLRKKVKILQAVGYNSIEAEDWEVATNDEE 399
                E E       KE      +K    D++++++ +L+ + ++       E AT+  E
Sbjct: 320 -----ENEVKEARKVKEESLTLANKFSDYDEIKRELSVLKQIEFSG------EHATH--E 366

Query: 400 MSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDD 459
            + +ES LL + +++  EL +L+   ++ T  +     K + L  K +EQ+++I+KLE D
Sbjct: 367 NTSLESQLLKREKQLSEELAKLRSTNAQLTDRITQESKKASFLEQKASEQEEVIRKLEKD 426

Query: 460 ILKGYSSKDRKGNVFDDWDLSEAGGT--ELSEKADKKHTYP-------------DQDQSS 504
           +    +  D +G+V+         GT  +LS  +      P             ++  S+
Sbjct: 427 L----ADVDVEGSVYLSNTTYRREGTSGQLSPTSSIMGGNPSLFNGSVLSRNSVNETGSA 482

Query: 505 MLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNE 564
           ++ VI  QRDRFR        +V    +KI +L ++LE+ +  N  LY ++RF   Y   
Sbjct: 483 IVDVIKQQRDRFRRANVTLVNQVSAANDKIALLESKLEEVEKSNTLLYEQMRFRDHY--- 539

Query: 565 KVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINPFAAFSKKERDQRYKELGIRDRITL 624
                  +K+ E   S   +         YE+ I+PFA+F KKE ++ Y  +G  +RI  
Sbjct: 540 -------QKHVEPSSSHLQT------AAAYENSISPFASFRKKEAERAYSRMGSFERIVY 586

Query: 625 SSGRFLLGNKY--NLLYLFLF 643
           +  R LL ++    L +++L 
Sbjct: 587 ALLRTLLFSRATRGLFFMYLI 607

May be involved in intra-Golgi transport.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O14529|CUX2_HUMAN Homeobox protein cut-like 2 OS=Homo sapiens GN=CUX2 PE=1 SV=4

 Score =  117 bits (294), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 124/439 (28%), Positives = 210/439 (47%), Gaps = 46/439 (10%)

Query: 21  VSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLF 80
           V  +  +WK FDL + +  L+ +  +++  QE S+ + + L E  R+FKK  PEE   + 
Sbjct: 5   VGSMFQYWKRFDLRRLQKELNSVASELSARQEESEHSHKHLIELRREFKKNVPEEIREMV 64

Query: 81  NSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENR 140
             +LK +Q EV  L+KR++  E AFL++Y++L EAPDP P   +    D +L     +  
Sbjct: 65  APVLKSFQAEVVALSKRSQEAEAAFLSVYKQLIEAPDPVPVFEAARSLDDRL-----QPP 119

Query: 141 KMKIELEEYRTEATHLKNQQSTIRRLEER--NRQLEQQMEEKVKEIVEIKQRGLAEEN-- 196
                 +  R   T  K     +   E+R         + E  + +  I  + L  E   
Sbjct: 120 SFDPSGQPRRDLHTSWKRNPELLSPKEQREGTSPAGPTLTEGSR-LPGIPGKALLTETLL 178

Query: 197 -------QKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAK 249
                  QK L   QE +  L  +L +A++ +  +    +  Q++L E+R + DEE  +K
Sbjct: 179 QRNEAEKQKGL---QEVQITLAARLGEAEEKIKVLHSALKATQAELLELRRKYDEEAASK 235

Query: 250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN-----------DEAGSRNSDTLDS 298
             EV L+M  +E+A  R  + QRE + LR QL S N             +G + + TL S
Sbjct: 236 ADEVGLIMTNLEKANQRAEAAQREVESLREQLASVNSSIRLACCSPQGPSGDKVNFTLCS 295

Query: 299 NSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKE 358
              LE +L++K++ I  L  ++ +++++L    E   N+I  L   L  K  A+E ++++
Sbjct: 296 GPRLEAALASKDREILRLLKDVQHLQSSLQELEEASANQIADLERQLTAKSEAIEKLEEK 355

Query: 359 LQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKME-SLLLDKNRKMEHE 417
           LQA+      ++++ ++ IL+A+   S         +  + M+K E SLL+ K    E  
Sbjct: 356 LQAQ---SDYEEIKTELSILKAMKLAS------STCSLPQGMAKPEDSLLIAK----EAF 402

Query: 418 LTQLKVKLSEKTSLLETAE 436
               K  L EK SLL + E
Sbjct: 403 FPTQKFLL-EKPSLLASPE 420

May be a transcription factor involved in neural specification. Binds to DNA in a sequence-specific manner.

Homo sapiens (taxid: 9606)

>sp|Q8IA98|CASP_CAEEL Protein CASP OS=Caenorhabditis elegans GN=ceh-44 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 129/630 (20%), Positives = 305/630 (48%), Gaps = 63/630 (10%)

Query: 23  VISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNS 82
           ++S  W+  D ++ ++ ++     + + Q++S+  + +L E +  ++  + ++   +   
Sbjct: 3   IVSRAWESVDWDRIQTRVEAEVTALGQRQDDSEIRKTRLVEESNAYRGRTNKDSRKVAIP 62

Query: 83  LLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPAL--ASIAEQDLKLSELESENR 140
           L+K +Q E D L  R+   ENA ++I + +   PDP   L  A   + D + ++   E R
Sbjct: 63  LIKAFQSEFDGLLARSTAAENALIDICKSIVSLPDPKSLLKGAEAWKNDAEKTQKAVEER 122

Query: 141 -KMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIV-EIKQRGLAEENQK 198
            ++K +L +   E   L+ +   +R+L+++  +LE + +  ++  V E++++   E N +
Sbjct: 123 EELKRQLIKVNNELEDLRGKDVKVRKLKDKLAKLESEQDIFIENAVNEVEKKAEQELNDR 182

Query: 199 TLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSE-VNLLM 257
             E++ E+E+ +++Q    + ++ +++  ++  Q +L E+  Q+ E++   ++E +++ M
Sbjct: 183 LTELIAEKEK-MKEQNEILEKNMDSLESKNKDIQRKL-EIAKQTVEQKDGLENEQLSIAM 240

Query: 258 DEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELN 317
            ++  A+ +++ L+     L ++ +  N+   S+ +  ++  + L + L  K+ +I +L 
Sbjct: 241 KDLADAKHKIVFLEERVSQLENEAEKVNE---SKKAGNIEDIAALGSVLVQKDDVIQQLT 297

Query: 318 SELHNIETALSNEREQ---HMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKK 374
           +++   E +   E  +    ++ ++K N  LI     L ++K +L++R   + +   + +
Sbjct: 298 NDIKRHEASHVEELAKWKLAVSAVEKKNKTLI---GELNELKNQLESRNDYEAI---KNE 351

Query: 375 VKILQAVGY-NSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLE 433
           +++L+ + + +S EA    +    E +  ++ LL +KNR++++E   L+V         E
Sbjct: 352 LRLLREIEFGDSAEANAESIERLGETVETLDRLLAEKNRRLQNENASLRVANDGFKGRNE 411

Query: 434 TAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADK 493
             E ++  L  K     +LI +LE D+           +   D  + E  GT    +  K
Sbjct: 412 EQEAELTVLKEKSERNDRLIAQLEADL----------ASAVQDIGIPERMGT---NEMLK 458

Query: 494 KHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYG 553
               P    +S++ ++ +QR+R   R+   EE +   K K   +  E+E+ + +N++L  
Sbjct: 459 DAPAPTISDASLVPILTSQRNRLHERVTSLEEAISLEKTKQLSVQNEIERVREENIRLCE 518

Query: 554 KIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINPFAAFSKKERDQRY 613
           +IRF+Q        S G ++ A ++E+G  +D  +                       R 
Sbjct: 519 RIRFLQ--------SPGGQQQA-NVEAGLGNDFRN---------------------GNRN 548

Query: 614 KELGIRDRITLSSGRFLLGNKYNLLYLFLF 643
           K++ + D+ TL+ GR +L    +    F +
Sbjct: 549 KKVSLHDKTTLNMGRAILATPKSRTVFFSY 578

May be involved in intra-Golgi retrograde transport.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	644
255541800	682	Protein CASP, putative [Ricinus communis	0.998	0.942	0.854	0.0
225455880	684	PREDICTED: protein CASP [Vitis vinifera]	1.0	0.941	0.838	0.0
224118916	689	predicted protein [Populus trichocarpa]	0.996	0.931	0.839	0.0
356520513	690	PREDICTED: protein CASP-like [Glycine ma	1.0	0.933	0.846	0.0
297734183	671	unnamed protein product [Vitis vinifera]	0.976	0.937	0.839	0.0
356531222	692	PREDICTED: protein CASP-like [Glycine ma	0.987	0.919	0.841	0.0
357521095	683	Protein CASP [Medicago truncatula] gi|35	0.992	0.935	0.811	0.0
18401903	689	protein CASP [Arabidopsis thaliana] gi|8	1.0	0.934	0.791	0.0
297830502	705	hypothetical protein ARALYDRAFT_318610 [	1.0	0.913	0.777	0.0
449442592	685	PREDICTED: protein CASP-like [Cucumis sa	0.998	0.938	0.814	0.0

>gi|255541800|ref|XP_002511964.1| Protein CASP, putative [Ricinus communis] gi|223549144|gb|EEF50633.1| Protein CASP, putative [Ricinus communis]

 Score = 1107 bits (2863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/644 (85%), Positives = 602/644 (93%), Gaps = 1/644 (0%)

Query: 1   MEAPLGGSDRDKPNTSSSSPVSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRK 60
           MEAP GGSDR+K N SSS P+ V+SNFWK+FDLEKEK +LDE GL+IAENQENS KNRRK
Sbjct: 1   MEAPPGGSDREKSNPSSS-PIPVVSNFWKEFDLEKEKIVLDEQGLRIAENQENSLKNRRK 59

Query: 61  LAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYP 120
           LAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYP
Sbjct: 60  LAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYP 119

Query: 121 ALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEK 180
           ALASIA+QDLKLSELESENRKMK+ELEE+RTEATHLKNQQ+TIRRLE+RNRQLEQQMEEK
Sbjct: 120 ALASIADQDLKLSELESENRKMKVELEEFRTEATHLKNQQATIRRLEDRNRQLEQQMEEK 179

Query: 181 VKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRA 240
           VKEIVE+KQR LAEENQKTLE+L+EREQ+LQDQLRQAK+SV+ MQKLHELAQSQLFEV A
Sbjct: 180 VKEIVEMKQRSLAEENQKTLEVLKEREQSLQDQLRQAKESVSNMQKLHELAQSQLFEVHA 239

Query: 241 QSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNS 300
           QS+EER AKQSEVNLLMDEVERAQTRLLSL+REK +LRSQLQSAN+E G++ SD+LDSN+
Sbjct: 240 QSEEERAAKQSEVNLLMDEVERAQTRLLSLEREKGVLRSQLQSANEETGNKKSDSLDSNN 299

Query: 301 YLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQ 360
            LEN+LSAKEKIISELN ELHNIETAL+NEREQH+NEIKKLN +L EKE ++E+MKKELQ
Sbjct: 300 VLENTLSAKEKIISELNMELHNIETALTNEREQHINEIKKLNMVLNEKELSIEEMKKELQ 359

Query: 361 ARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQ 420
           ARPT+K+VDDLRKKVKILQAVGYNSIEAEDWE AT+ EEMSKMESLLLDKNRKMEHELT 
Sbjct: 360 ARPTAKLVDDLRKKVKILQAVGYNSIEAEDWEAATSGEEMSKMESLLLDKNRKMEHELTH 419

Query: 421 LKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLS 480
           LKVKLSEK S LETAE KI EL+AK+NEQQKLIQKLEDDILKGYSSKD+KG +FDDWDLS
Sbjct: 420 LKVKLSEKESTLETAESKIVELSAKVNEQQKLIQKLEDDILKGYSSKDQKGGLFDDWDLS 479

Query: 481 EAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAE 540
           EAG  ELSE AD+KH   DQDQSSMLKVICNQRDRFR RLRETEEEVRQLKEKIG+LTAE
Sbjct: 480 EAGRVELSENADQKHVSSDQDQSSMLKVICNQRDRFRKRLRETEEEVRQLKEKIGLLTAE 539

Query: 541 LEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINP 600
           LEK+KADNV+LYGKIR+VQDYN EKV+SRGSKK AEDLESGF+SD+ESKYKK+YEDDINP
Sbjct: 540 LEKSKADNVKLYGKIRYVQDYNLEKVVSRGSKKQAEDLESGFSSDVESKYKKIYEDDINP 599

Query: 601 FAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYNLLYLFLFS 644
           FAAFSKKERDQRYKELG+RDRITLSSGRFLLGNKY   + F ++
Sbjct: 600 FAAFSKKERDQRYKELGLRDRITLSSGRFLLGNKYARTFAFFYT 643

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455880|ref|XP_002275327.1| PREDICTED: protein CASP [Vitis vinifera]

 Score = 1101 bits (2847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/644 (83%), Positives = 606/644 (94%)

Query: 1   MEAPLGGSDRDKPNTSSSSPVSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRK 60
           MEAP GGSDRDKP  +SSSP+ V+SNFW++FDLEKE+S+LDE GL+IAENQENSQKNRRK
Sbjct: 1   MEAPQGGSDRDKPMPASSSPIPVVSNFWREFDLEKERSVLDEQGLRIAENQENSQKNRRK 60

Query: 61  LAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYP 120
           LAESTRDFKKASP+EKL+LFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYP
Sbjct: 61  LAESTRDFKKASPDEKLNLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYP 120

Query: 121 ALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEK 180
           ALASIAEQD+KLSELESENRKMK+ELEE+RTEATHLKNQQ+TIRRLEERNRQLEQQMEEK
Sbjct: 121 ALASIAEQDMKLSELESENRKMKVELEEFRTEATHLKNQQATIRRLEERNRQLEQQMEEK 180

Query: 181 VKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRA 240
           VKEIVE+KQR LAEENQKTLE+L+ERE+ LQDQLRQAK+SV+ MQKLHELAQSQ+FE+RA
Sbjct: 181 VKEIVEMKQRSLAEENQKTLEVLKERERLLQDQLRQAKESVSNMQKLHELAQSQMFELRA 240

Query: 241 QSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNS 300
           QS+E+  AKQSEV+LLMDEVERAQT LLSL+REK LLRS+LQSANDE G + SD LDSNS
Sbjct: 241 QSEEDTAAKQSEVSLLMDEVERAQTLLLSLEREKGLLRSKLQSANDENGQKKSDNLDSNS 300

Query: 301 YLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQ 360
            LENSLSAKEKIISELN ELHNIE  LSNEREQH+NEIK+LNALL EK+ ALE++KKEL 
Sbjct: 301 ILENSLSAKEKIISELNMELHNIEITLSNEREQHVNEIKRLNALLNEKDLALEEIKKELL 360

Query: 361 ARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQ 420
           ARPT+K+VDDLRKKVKILQAVGYNSIEAEDWEVAT+ EEMSK+ESLLLDKNRKMEHELTQ
Sbjct: 361 ARPTAKLVDDLRKKVKILQAVGYNSIEAEDWEVATSGEEMSKLESLLLDKNRKMEHELTQ 420

Query: 421 LKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLS 480
           LKVKL+EKTSLLETAEGKI ELTAK+NEQQ+LIQKLEDDILKGYSSK+RKG++F+DWDL 
Sbjct: 421 LKVKLTEKTSLLETAEGKIVELTAKVNEQQRLIQKLEDDILKGYSSKERKGSLFEDWDLL 480

Query: 481 EAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAE 540
           + G TE S++A++KH  PDQ+Q+SMLKVICNQRDRFRARLRETEEEV+QLKEKIG+LT E
Sbjct: 481 DNGATETSQRAEQKHVSPDQEQNSMLKVICNQRDRFRARLRETEEEVKQLKEKIGLLTVE 540

Query: 541 LEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINP 600
           LEKTKADNV+LYGKIR+VQDYN EKV+SRGSKK++EDLESGF+SD+ESKYKK+YEDDINP
Sbjct: 541 LEKTKADNVKLYGKIRYVQDYNLEKVVSRGSKKHSEDLESGFSSDVESKYKKIYEDDINP 600

Query: 601 FAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYNLLYLFLFS 644
           FAAFSKKERDQRYKELGIRD+ITLSSGRFLLGN+Y   + F ++
Sbjct: 601 FAAFSKKERDQRYKELGIRDKITLSSGRFLLGNRYARTFAFFYT 644

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118916|ref|XP_002317937.1| predicted protein [Populus trichocarpa] gi|222858610|gb|EEE96157.1| predicted protein [Populus trichocarpa]

 Score = 1090 bits (2818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 548/653 (83%), Positives = 596/653 (91%), Gaps = 11/653 (1%)

Query: 1   MEAPLGGSDRDKPNTSSSSPVSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRK 60
           MEAP GGS+RDK  T S+SPVS++SNFWKDF+LEKEKS+LDE GL+IAENQENSQKNRRK
Sbjct: 1   MEAPQGGSERDK--TISTSPVSLVSNFWKDFELEKEKSVLDEQGLRIAENQENSQKNRRK 58

Query: 61  LAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYP 120
           LAESTRDFKKAS +EKL LFNSLLKG+QEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYP
Sbjct: 59  LAESTRDFKKASSDEKLGLFNSLLKGFQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYP 118

Query: 121 ALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEK 180
           ALASI+EQDLKLSELESE+RKMK+ELEE+RTEA HLKNQQ+TIRRLEERNRQLEQQMEEK
Sbjct: 119 ALASISEQDLKLSELESESRKMKVELEEFRTEAAHLKNQQATIRRLEERNRQLEQQMEEK 178

Query: 181 VKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRA 240
           VKEIVE+KQR LAEENQKTLE+L+EREQ+LQDQLRQAKDSVAT+QKLHELAQSQLFEVRA
Sbjct: 179 VKEIVEMKQRSLAEENQKTLEVLKEREQSLQDQLRQAKDSVATIQKLHELAQSQLFEVRA 238

Query: 241 QSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNS 300
           QS+EE  AKQSEVN LMDEVERAQTRL SL+REK +LRSQLQSAN+E   +  D  DS S
Sbjct: 239 QSEEEWAAKQSEVNFLMDEVERAQTRLHSLEREKGVLRSQLQSANEEIEDKKGDNSDSTS 298

Query: 301 YLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQ 360
            LE+SLS KEK+ISELN ELHNIET L+NEREQH+NEIKKLN LL EKEAALE+MKKELQ
Sbjct: 299 ILESSLSTKEKLISELNMELHNIETTLTNEREQHINEIKKLNILLNEKEAALEEMKKELQ 358

Query: 361 ARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQ 420
           A+PT K+VDDLRKKVKILQAVGYNSIEAEDWEVAT+ EEMSKMESLLLDKNRKMEHELTQ
Sbjct: 359 AKPTEKLVDDLRKKVKILQAVGYNSIEAEDWEVATSGEEMSKMESLLLDKNRKMEHELTQ 418

Query: 421 LKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLS 480
           LKVK+SEK + LETAEGKI ELTAK+NEQQKLIQKLEDDILKGYSSKDRKG++FD WDLS
Sbjct: 419 LKVKISEKATSLETAEGKITELTAKVNEQQKLIQKLEDDILKGYSSKDRKGSLFDAWDLS 478

Query: 481 EAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEE---------EVRQLK 531
           EAGG ELSE AD+KH   DQDQSSMLKVICNQRDRFRARLRETEE         EVRQLK
Sbjct: 479 EAGGVELSENADQKHVSVDQDQSSMLKVICNQRDRFRARLRETEEACYMLYNLFEVRQLK 538

Query: 532 EKIGVLTAELEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYK 591
           EKIGVL A+LEKTKADNV+LYGKIR+VQDYN EKV+SRGSKK+AEDLESGF SD+ESKYK
Sbjct: 539 EKIGVLAADLEKTKADNVKLYGKIRYVQDYNLEKVVSRGSKKHAEDLESGFASDVESKYK 598

Query: 592 KMYEDDINPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYNLLYLFLFS 644
           K+YEDDINPFAAFSKKERDQRYKELG RDRITLSSGRFLLGNKY   + F ++
Sbjct: 599 KIYEDDINPFAAFSKKERDQRYKELGFRDRITLSSGRFLLGNKYARTFAFFYT 651

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520513|ref|XP_003528906.1| PREDICTED: protein CASP-like [Glycine max]

 Score = 1082 bits (2797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/650 (84%), Positives = 601/650 (92%), Gaps = 6/650 (0%)

Query: 1   MEAPLGGS----DRDKPNTSSSSPVSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQK 56
           MEAP GGS    +RDK    SSSP+SV+S FWKDF+LEKEKS+LDE GL+IAENQE+SQK
Sbjct: 1   MEAPQGGSGSGPERDKSTAPSSSPISVVSAFWKDFELEKEKSILDEQGLRIAENQESSQK 60

Query: 57  NRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAP 116
           NRRKLAE+TRDFKKASPE+KLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAP
Sbjct: 61  NRRKLAENTRDFKKASPEDKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAP 120

Query: 117 DPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQ 176
           DPYPALASIAEQDLK+SELESENRKMK+ELEE+RTEATHLKNQQ+TIRRLEERNRQLEQQ
Sbjct: 121 DPYPALASIAEQDLKISELESENRKMKVELEEFRTEATHLKNQQATIRRLEERNRQLEQQ 180

Query: 177 MEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLF 236
           MEEKVKEIVEIKQR LAEENQKTLE+L+EREQALQDQL+ AKDSV+TMQKLHELAQ+QLF
Sbjct: 181 MEEKVKEIVEIKQRSLAEENQKTLEVLKEREQALQDQLQHAKDSVSTMQKLHELAQNQLF 240

Query: 237 EVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTL 296
           E+RAQS+EER +KQSEVNLLMDEVERAQ+ LLSL+REK +LRSQLQ+AN+E  ++NSD  
Sbjct: 241 ELRAQSEEERASKQSEVNLLMDEVERAQSMLLSLEREKGVLRSQLQTANEETETKNSDNF 300

Query: 297 DSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMK 356
           DSNS LENSL+AKEK ISELN ELHNIETALSNER+QH+NE+KKL A+L EKEAALE+MK
Sbjct: 301 DSNSALENSLNAKEKQISELNMELHNIETALSNERDQHINEVKKLTAMLNEKEAALEEMK 360

Query: 357 KELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEH 416
           KEL+ARPT KMVDDLRKKVKILQAVGYNSIEAEDWEVAT+ EEMSKMESLLLDKNRKMEH
Sbjct: 361 KELKARPTEKMVDDLRKKVKILQAVGYNSIEAEDWEVATSGEEMSKMESLLLDKNRKMEH 420

Query: 417 ELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS--SKDRKGNVF 474
           ELTQLKV LSEKTSLLETAE KIAELTAK+NEQQKL+QKLEDDILKGYS  SKDRKGN  
Sbjct: 421 ELTQLKVTLSEKTSLLETAEQKIAELTAKVNEQQKLVQKLEDDILKGYSSNSKDRKGNFL 480

Query: 475 DDWDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKI 534
           DDWDLSEAGG E+SE  D++    DQDQSSMLKVICNQRDRFR RLRETEEE+RQLKEKI
Sbjct: 481 DDWDLSEAGGGEVSENTDQRQVSLDQDQSSMLKVICNQRDRFRTRLRETEEEIRQLKEKI 540

Query: 535 GVLTAELEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMY 594
           GVLT ELEK+KADNV+LYGKIR+VQDYN+EKVISRGSKKYAEDLESGF SD+ESKYKK+Y
Sbjct: 541 GVLTVELEKSKADNVKLYGKIRYVQDYNHEKVISRGSKKYAEDLESGFASDVESKYKKIY 600

Query: 595 EDDINPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYNLLYLFLFS 644
           EDDINPFAAFSKKERDQRYKELG RDRITLSSGRFLLGNKY   + F ++
Sbjct: 601 EDDINPFAAFSKKERDQRYKELGFRDRITLSSGRFLLGNKYARTFAFFYT 650

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734183|emb|CBI15430.3| unnamed protein product [Vitis vinifera]

 Score = 1075 bits (2779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/629 (83%), Positives = 594/629 (94%)

Query: 16  SSSSPVSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEE 75
           +SSSP+ V+SNFW++FDLEKE+S+LDE GL+IAENQENSQKNRRKLAESTRDFKKASP+E
Sbjct: 3   ASSSPIPVVSNFWREFDLEKERSVLDEQGLRIAENQENSQKNRRKLAESTRDFKKASPDE 62

Query: 76  KLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSEL 135
           KL+LFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQD+KLSEL
Sbjct: 63  KLNLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDMKLSEL 122

Query: 136 ESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEE 195
           ESENRKMK+ELEE+RTEATHLKNQQ+TIRRLEERNRQLEQQMEEKVKEIVE+KQR LAEE
Sbjct: 123 ESENRKMKVELEEFRTEATHLKNQQATIRRLEERNRQLEQQMEEKVKEIVEMKQRSLAEE 182

Query: 196 NQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNL 255
           NQKTLE+L+ERE+ LQDQLRQAK+SV+ MQKLHELAQSQ+FE+RAQS+E+  AKQSEV+L
Sbjct: 183 NQKTLEVLKERERLLQDQLRQAKESVSNMQKLHELAQSQMFELRAQSEEDTAAKQSEVSL 242

Query: 256 LMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISE 315
           LMDEVERAQT LLSL+REK LLRS+LQSANDE G + SD LDSNS LENSLSAKEKIISE
Sbjct: 243 LMDEVERAQTLLLSLEREKGLLRSKLQSANDENGQKKSDNLDSNSILENSLSAKEKIISE 302

Query: 316 LNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKV 375
           LN ELHNIE  LSNEREQH+NEIK+LNALL EK+ ALE++KKEL ARPT+K+VDDLRKKV
Sbjct: 303 LNMELHNIEITLSNEREQHVNEIKRLNALLNEKDLALEEIKKELLARPTAKLVDDLRKKV 362

Query: 376 KILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETA 435
           KILQAVGYNSIEAEDWEVAT+ EEMSK+ESLLLDKNRKMEHELTQLKVKL+EKTSLLETA
Sbjct: 363 KILQAVGYNSIEAEDWEVATSGEEMSKLESLLLDKNRKMEHELTQLKVKLTEKTSLLETA 422

Query: 436 EGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKH 495
           EGKI ELTAK+NEQQ+LIQKLEDDILKGYSSK+RKG++F+DWDL + G TE S++A++KH
Sbjct: 423 EGKIVELTAKVNEQQRLIQKLEDDILKGYSSKERKGSLFEDWDLLDNGATETSQRAEQKH 482

Query: 496 TYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKI 555
             PDQ+Q+SMLKVICNQRDRFRARLRETEEEV+QLKEKIG+LT ELEKTKADNV+LYGKI
Sbjct: 483 VSPDQEQNSMLKVICNQRDRFRARLRETEEEVKQLKEKIGLLTVELEKTKADNVKLYGKI 542

Query: 556 RFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINPFAAFSKKERDQRYKE 615
           R+VQDYN EKV+SRGSKK++EDLESGF+SD+ESKYKK+YEDDINPFAAFSKKERDQRYKE
Sbjct: 543 RYVQDYNLEKVVSRGSKKHSEDLESGFSSDVESKYKKIYEDDINPFAAFSKKERDQRYKE 602

Query: 616 LGIRDRITLSSGRFLLGNKYNLLYLFLFS 644
           LGIRD+ITLSSGRFLLGN+Y   + F ++
Sbjct: 603 LGIRDKITLSSGRFLLGNRYARTFAFFYT 631

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531222|ref|XP_003534177.1| PREDICTED: protein CASP-like [Glycine max]

 Score = 1063 bits (2749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/638 (84%), Positives = 591/638 (92%), Gaps = 2/638 (0%)

Query: 9   DRDKPNTSSSSPVSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDF 68
           +RDK    SSSP+SV+S FWKDF+LEKEKS+LDE GL+IAENQENSQ+NRRKLAE+TRDF
Sbjct: 15  ERDKSTAPSSSPISVVSAFWKDFELEKEKSILDEQGLRIAENQENSQRNRRKLAENTRDF 74

Query: 69  KKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQ 128
           KKASPE+KLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPAL SIAEQ
Sbjct: 75  KKASPEDKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALVSIAEQ 134

Query: 129 DLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIK 188
           DLK+SELESENRKMK+ELEE+RTEATHLKNQQ+TIRRLEERNRQLEQQMEEKVKEIVEIK
Sbjct: 135 DLKISELESENRKMKVELEEFRTEATHLKNQQATIRRLEERNRQLEQQMEEKVKEIVEIK 194

Query: 189 QRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVA 248
           QR LAEENQKT+E+L+EREQALQDQL+ AKDSV+TMQKLHELAQ+QLFE+RAQS+EER +
Sbjct: 195 QRSLAEENQKTMEVLKEREQALQDQLQHAKDSVSTMQKLHELAQNQLFELRAQSEEERAS 254

Query: 249 KQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSA 308
           KQSEVNLLMDEVERAQ+ LLSL+REK +LR+QLQ+AN+E  ++NSD  DSNS LENSL+A
Sbjct: 255 KQSEVNLLMDEVERAQSMLLSLEREKGVLRNQLQTANEETETKNSDNFDSNSALENSLNA 314

Query: 309 KEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMV 368
           KEK IS+LN ELHNIETALSNER+QH+NE+KKL A+L EKEAALE+MKKEL+ARPT KMV
Sbjct: 315 KEKQISDLNMELHNIETALSNERDQHINEVKKLTAMLNEKEAALEEMKKELKARPTEKMV 374

Query: 369 DDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEK 428
           DDLRKKVKILQAVGYNSIEAEDWEVAT+ EEMSKMESLLLDKNRKMEHELTQLKV LSEK
Sbjct: 375 DDLRKKVKILQAVGYNSIEAEDWEVATSGEEMSKMESLLLDKNRKMEHELTQLKVTLSEK 434

Query: 429 TSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS--SKDRKGNVFDDWDLSEAGGTE 486
           TS+LETAE KIAELTAK NEQQKLIQKLEDDILKGYS  SKDRKGN  DDWDLSEAGG E
Sbjct: 435 TSILETAEQKIAELTAKSNEQQKLIQKLEDDILKGYSSNSKDRKGNFLDDWDLSEAGGGE 494

Query: 487 LSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546
           +SE  D++    DQDQSSMLKVICNQRDRFR RLRETEEE+RQLKEKIGVLT ELEK+K 
Sbjct: 495 VSENTDQRQVSLDQDQSSMLKVICNQRDRFRTRLRETEEEIRQLKEKIGVLTVELEKSKV 554

Query: 547 DNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINPFAAFSK 606
           DNV+LYGKIR+VQDYN+EKV+SRGSKKYAEDLESGF SD+ESKYKK+YEDDINPFAAFSK
Sbjct: 555 DNVKLYGKIRYVQDYNHEKVVSRGSKKYAEDLESGFMSDVESKYKKIYEDDINPFAAFSK 614

Query: 607 KERDQRYKELGIRDRITLSSGRFLLGNKYNLLYLFLFS 644
           KERDQRYKELG RDRITLSSGRFLLGNKY   + F ++
Sbjct: 615 KERDQRYKELGFRDRITLSSGRFLLGNKYARTFAFFYT 652

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357521095|ref|XP_003630836.1| Protein CASP [Medicago truncatula] gi|355524858|gb|AET05312.1| Protein CASP [Medicago truncatula]

 Score = 1046 bits (2705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/648 (81%), Positives = 586/648 (90%), Gaps = 9/648 (1%)

Query: 1   MEAPLGGSDRDKPNTSSSSPVSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRK 60
           ME+P  GS+RD  N    SP+SV+S FWKDFDLEKEKS+LDE GL+IAENQENSQKNRRK
Sbjct: 1   MESPPSGSERDTTN----SPISVVSAFWKDFDLEKEKSVLDEQGLRIAENQENSQKNRRK 56

Query: 61  LAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYP 120
           LAESTR+FKKASPE+K SLFN+LLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYP
Sbjct: 57  LAESTRNFKKASPEDKSSLFNALLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYP 116

Query: 121 ALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEK 180
           ALAS+AEQDLKLSELESENRKMK+ELEE+RTEATHLKNQQ+TIRRLEER+RQLEQQMEEK
Sbjct: 117 ALASVAEQDLKLSELESENRKMKVELEEFRTEATHLKNQQATIRRLEERSRQLEQQMEEK 176

Query: 181 VKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRA 240
           VKEIVEIK R LAEENQKTLEIL+EREQ LQDQL+ AK+SV+ M+KLHELAQ+QLFE+RA
Sbjct: 177 VKEIVEIKHRNLAEENQKTLEILKEREQLLQDQLQSAKESVSNMKKLHELAQNQLFELRA 236

Query: 241 QSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNS 300
           QS+EER AKQ+E NLLMDEVERAQT LL L+REK +LRSQLQ+AN+++ ++ SD LDSN+
Sbjct: 237 QSEEERAAKQAEANLLMDEVERAQTMLLGLEREKGVLRSQLQTANEDSETKKSDNLDSNN 296

Query: 301 YLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQ 360
            LENSL AKEK+ISELN ELHNIET LSNERE+H+N++KK  A+L EKEA++  MKKELQ
Sbjct: 297 ALENSLIAKEKLISELNMELHNIETTLSNEREEHINDVKKFTAMLNEKEASIVAMKKELQ 356

Query: 361 ARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQ 420
            RPT K+VDDLRKKVKILQAVGYNSIEAEDWEVAT+ EEMSKMESLLLDKNRKMEHELTQ
Sbjct: 357 TRPTEKIVDDLRKKVKILQAVGYNSIEAEDWEVATSGEEMSKMESLLLDKNRKMEHELTQ 416

Query: 421 LKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY--SSKDRKGNVFDDWD 478
           LKVKLSEKTS LETAE K+AEL+AK+NEQQKLIQKLEDDI KGY  SSKD KG   DDWD
Sbjct: 417 LKVKLSEKTSSLETAEQKVAELSAKVNEQQKLIQKLEDDISKGYNSSSKDHKGTFLDDWD 476

Query: 479 LSEAGGTELSEK--ADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGV 536
           LSEA  +E+SE    D++H   DQDQSSMLKVIC+QRDRFR RLRETEEE+RQLKEKIGV
Sbjct: 477 LSEANRSEVSEHQNMDQRHAL-DQDQSSMLKVICSQRDRFRTRLRETEEEIRQLKEKIGV 535

Query: 537 LTAELEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYED 596
           LTAELEKTKADNV+LYGKIR+VQDYN EKV+SRGSKKYAEDLESGFTSD+ESKYKK+YE+
Sbjct: 536 LTAELEKTKADNVKLYGKIRYVQDYNVEKVVSRGSKKYAEDLESGFTSDVESKYKKIYEE 595

Query: 597 DINPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYNLLYLFLFS 644
           DINPFAAFSKKERDQRYKELG RDRITLSSGRFLLGNKY   + F ++
Sbjct: 596 DINPFAAFSKKERDQRYKELGFRDRITLSSGRFLLGNKYARTFAFFYT 643

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401903|ref|NP_566611.1| protein CASP [Arabidopsis thaliana] gi|85540967|sp|Q9LS42.2|CASP_ARATH RecName: Full=Protein CASP gi|15810373|gb|AAL07074.1| unknown protein [Arabidopsis thaliana] gi|23296990|gb|AAN13218.1| unknown protein [Arabidopsis thaliana] gi|332642581|gb|AEE76102.1| protein CASP [Arabidopsis thaliana]

 Score = 1035 bits (2676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/649 (79%), Positives = 585/649 (90%), Gaps = 5/649 (0%)

Query: 1   MEAPLGGSDRDKPNTSSSSP-----VSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQ 55
           ME    GS+RDK    SSS      + V++NFWK+FDLEKEKSLLDE GL+IAENQENSQ
Sbjct: 1   MEVSQDGSERDKTPPPSSSSSSSSPIPVVTNFWKEFDLEKEKSLLDEQGLRIAENQENSQ 60

Query: 56  KNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEA 115
           KNRRKLAESTRDFKKASPE KLS+FNSLLKGYQEEVDN+TKRAKFGENAFLNIYQKLYEA
Sbjct: 61  KNRRKLAESTRDFKKASPENKLSMFNSLLKGYQEEVDNITKRAKFGENAFLNIYQKLYEA 120

Query: 116 PDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQ 175
           PDP+PALASIAEQD KLSE+ESENRKMK+ELEE+RTEATHLKNQQ+TIRRLEERNRQLEQ
Sbjct: 121 PDPFPALASIAEQDRKLSEVESENRKMKVELEEFRTEATHLKNQQATIRRLEERNRQLEQ 180

Query: 176 QMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQL 235
           QMEEK+KE+VEIKQR LAEENQKT+E+L++REQALQDQLRQAKDSV+TMQKLHELAQ+QL
Sbjct: 181 QMEEKIKEVVEIKQRNLAEENQKTMELLKDREQALQDQLRQAKDSVSTMQKLHELAQNQL 240

Query: 236 FEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDT 295
           FE+RAQSDEE   KQSEV+LLMDEVERAQTRLL+L+REK  LRSQLQ+AN++  ++ SD 
Sbjct: 241 FELRAQSDEETAGKQSEVSLLMDEVERAQTRLLTLEREKGHLRSQLQTANEDTDNKKSDN 300

Query: 296 LDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDM 355
           +DSNS LENSL+AKEKIISELN E+HN+ETAL+NERE H+ EIKKLN+LL +K+  +E+M
Sbjct: 301 IDSNSMLENSLTAKEKIISELNMEIHNVETALANERESHVAEIKKLNSLLNKKDTIIEEM 360

Query: 356 KKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKME 415
           KKELQ RP++K+VDDLRKKVKILQAVGYNSIEAEDW+ AT  EEMSKMESLLLDKNRKME
Sbjct: 361 KKELQERPSAKLVDDLRKKVKILQAVGYNSIEAEDWDAATTGEEMSKMESLLLDKNRKME 420

Query: 416 HELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFD 475
           HE+TQLKV+LSEK SLLE AE K  ELTAK+NEQQ+LIQKLEDDILKGY SK+RKG +FD
Sbjct: 421 HEVTQLKVQLSEKASLLEKAEAKGEELTAKVNEQQRLIQKLEDDILKGYGSKERKGALFD 480

Query: 476 DWDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIG 535
           +W+ SEAG  E SE  D+KH   +QDQSSMLKVIC+QRDRFRARLRETEEE+R+LKEKIG
Sbjct: 481 EWEFSEAGVAEQSEPMDQKHVPSEQDQSSMLKVICSQRDRFRARLRETEEEIRRLKEKIG 540

Query: 536 VLTAELEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYE 595
            LT ELEKTKADNV+LYGKIR+VQDYN++KV+SRGSKKY EDLESGF+SD+ESKYKK+YE
Sbjct: 541 FLTDELEKTKADNVKLYGKIRYVQDYNHDKVVSRGSKKYVEDLESGFSSDVESKYKKIYE 600

Query: 596 DDINPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYNLLYLFLFS 644
           DDINPFAAFSKKER+QR K+LGIRDRITLSSGRFLLGNKY   + F ++
Sbjct: 601 DDINPFAAFSKKEREQRIKDLGIRDRITLSSGRFLLGNKYARTFAFFYT 649

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830502|ref|XP_002883133.1| hypothetical protein ARALYDRAFT_318610 [Arabidopsis lyrata subsp. lyrata] gi|297328973|gb|EFH59392.1| hypothetical protein ARALYDRAFT_318610 [Arabidopsis lyrata subsp. lyrata]

 Score = 1031 bits (2667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/665 (77%), Positives = 589/665 (88%), Gaps = 21/665 (3%)

Query: 1   MEAPLGGSDRDKPNTSSSSP----VSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQK 56
           ME    GS+RDK    SSS     + V++NFWK+FDLEKEKSLLDE GLKIAENQENSQK
Sbjct: 1   MEVLQDGSERDKTPPPSSSSSSSPIPVVTNFWKEFDLEKEKSLLDEQGLKIAENQENSQK 60

Query: 57  NRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAP 116
           NRRKLAESTRDFKKASPE+KLS+FNSLLKGYQEEVDN+TKRAKFGENAFLNIYQKLYEAP
Sbjct: 61  NRRKLAESTRDFKKASPEDKLSMFNSLLKGYQEEVDNITKRAKFGENAFLNIYQKLYEAP 120

Query: 117 DPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQ 176
           DP+PALASIA+QD KLSE+ESENRKMK+ELEE+RTEATHLKNQQ+TIRRLEERNRQLEQQ
Sbjct: 121 DPFPALASIADQDRKLSEVESENRKMKVELEEFRTEATHLKNQQATIRRLEERNRQLEQQ 180

Query: 177 MEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLF 236
           MEEK+KE+VEIKQR LAEENQKT+E+L++REQALQDQLRQAKDSV+TMQKLHELAQSQLF
Sbjct: 181 MEEKIKEVVEIKQRNLAEENQKTMELLKDREQALQDQLRQAKDSVSTMQKLHELAQSQLF 240

Query: 237 EVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTL 296
           E+RAQSDEE  AKQSEV+LLMDEVERAQTRLL+L+REK  LRSQLQ+AN++  ++ SD +
Sbjct: 241 EIRAQSDEETAAKQSEVSLLMDEVERAQTRLLTLEREKGHLRSQLQTANEDTDNKKSDNV 300

Query: 297 DSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALL----------- 345
           DSNS LENSL+AKEKIISELN E+HN+ETAL+NERE H+ EIKKLN+LL           
Sbjct: 301 DSNSMLENSLTAKEKIISELNMEIHNVETALANERESHVAEIKKLNSLLNKKNFYFVLKP 360

Query: 346 ------IEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEE 399
                 + ++  +E+MKKEL+ RP++K+VDDLRKKVKILQAVGYNSIEAEDW+ AT  EE
Sbjct: 361 TVILLVLNQDTVIEEMKKELRERPSAKLVDDLRKKVKILQAVGYNSIEAEDWDAATTGEE 420

Query: 400 MSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDD 459
           MSKMESLLLDKNRKMEHE+TQLKV+LSEKTSLLE AE K  ELTAK+NEQQ+LIQKLEDD
Sbjct: 421 MSKMESLLLDKNRKMEHEVTQLKVQLSEKTSLLEKAEAKGEELTAKVNEQQRLIQKLEDD 480

Query: 460 ILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRAR 519
           ILKGYSSK+RKG +FD+W+ SEAG  E SE  D+KH   DQDQSSMLKVIC+QRDRFRAR
Sbjct: 481 ILKGYSSKERKGALFDEWEFSEAGVAEQSEPMDQKHIPSDQDQSSMLKVICSQRDRFRAR 540

Query: 520 LRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLE 579
           LRETEEE+R+LKEKIG LT ELEKTKADNV+LYGKIR+VQDYN++KV+SRGSKKY EDLE
Sbjct: 541 LRETEEEIRRLKEKIGFLTDELEKTKADNVKLYGKIRYVQDYNHDKVVSRGSKKYVEDLE 600

Query: 580 SGFTSDIESKYKKMYEDDINPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYNLLY 639
           SGF+SD+ESKYKK+YEDDINPFAAFSKKER+QR K+LGIRDRITLSSGRFLLGNKY   +
Sbjct: 601 SGFSSDVESKYKKIYEDDINPFAAFSKKEREQRIKDLGIRDRITLSSGRFLLGNKYARTF 660

Query: 640 LFLFS 644
            F ++
Sbjct: 661 AFFYT 665

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442592|ref|XP_004139065.1| PREDICTED: protein CASP-like [Cucumis sativus]

 Score = 1021 bits (2641), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/646 (81%), Positives = 586/646 (90%), Gaps = 3/646 (0%)

Query: 1   MEAPLGGSDRDKP--NTSSSSPVSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNR 58
           ME+P GGS+RDKP  ++SS+S VSV+S+FWK+FDLEKEKS LDE GL+IAENQENSQKNR
Sbjct: 1   MESPQGGSERDKPPNSSSSTSAVSVVSSFWKEFDLEKEKSALDEQGLRIAENQENSQKNR 60

Query: 59  RKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDP 118
           RKLAESTRDFKKA PEEKL+LF+SLLK YQEEVDNLTKRAKFGENAFLNIYQKLYEAPDP
Sbjct: 61  RKLAESTRDFKKAQPEEKLNLFSSLLKSYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDP 120

Query: 119 YPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQME 178
           YPALASI EQDLKLSELESENRKMK+ELEE+RTEATHLKNQQ+TIRRLEERNRQLEQQME
Sbjct: 121 YPALASIGEQDLKLSELESENRKMKVELEEFRTEATHLKNQQATIRRLEERNRQLEQQME 180

Query: 179 EKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEV 238
           EK+KEIVEIKQR LAEE    L ++  RE+ LQDQLR+ ++SV+ MQKLHE AQSQLFE+
Sbjct: 181 EKIKEIVEIKQRSLAEEGYFILFLIMFRERLLQDQLRREQESVSNMQKLHERAQSQLFEL 240

Query: 239 RAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDS 298
           RAQSDEER AKQSEV LLMDEVERAQTRLLSL+REK LLRSQLQSAND+ G++ SD LD 
Sbjct: 241 RAQSDEERAAKQSEVTLLMDEVERAQTRLLSLEREKGLLRSQLQSANDDTGNKKSDNLDL 300

Query: 299 NSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKE 358
           NS LENSLSAKEKIISELN ELHNIET LS+EREQH+ EIK LNAL+ EKE A+++MK+E
Sbjct: 301 NSVLENSLSAKEKIISELNMELHNIETTLSSEREQHIIEIKNLNALINEKETAIDEMKRE 360

Query: 359 LQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHEL 418
           LQ+RPT KMVDDLRKKVKILQAVGYNSIEAEDWEVAT+ EEMSKMESLLLDKNRKMEHEL
Sbjct: 361 LQSRPTEKMVDDLRKKVKILQAVGYNSIEAEDWEVATSGEEMSKMESLLLDKNRKMEHEL 420

Query: 419 TQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWD 478
           TQ KVKLSEK+SLL+TAE KIAELT K+ EQQKLIQKLE+DILKGY+SKD+KG++FD+WD
Sbjct: 421 TQFKVKLSEKSSLLDTAESKIAELTEKVVEQQKLIQKLEEDILKGYNSKDQKGSLFDEWD 480

Query: 479 LSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLT 538
           LSEA G ELSE  D+KH   DQDQSSMLKVIC+QRDRFRARLRE EEE+RQLKEKIG LT
Sbjct: 481 LSEARG-ELSENVDRKHFPLDQDQSSMLKVICSQRDRFRARLREAEEEIRQLKEKIGQLT 539

Query: 539 AELEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDI 598
            +LEKTKADNV+LYGKIR+VQDYN EKV+SRGSKK+AEDLESG  SD+ESKYKK+YEDDI
Sbjct: 540 VDLEKTKADNVKLYGKIRYVQDYNLEKVVSRGSKKHAEDLESGSMSDVESKYKKIYEDDI 599

Query: 599 NPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYNLLYLFLFS 644
           NPFAAFS+KE+DQRYKELG RDRITLSSGRFLLGNKY   + F ++
Sbjct: 600 NPFAAFSRKEKDQRYKELGFRDRITLSSGRFLLGNKYARAFAFFYT 645

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	644
TAIR|locus:2095012	689	CASP "AT3G18480" [Arabidopsis	1.0	0.934	0.727	1.3e-244
UNIPROTKB|H0YMA9	692	CUX1 "Protein CASP" [Homo sapi	0.877	0.816	0.314	4.6e-73
UNIPROTKB|Q13948	678	CUX1 "Protein CASP" [Homo sapi	0.877	0.833	0.314	4.6e-73
MGI|MGI:88568	678	Cux1 "cut-like homeobox 1" [Mu	0.875	0.831	0.305	1.1e-71
UNIPROTKB|F1NGM7	658	Gga.43632 "Uncharacterized pro	0.891	0.872	0.299	2.9e-71
ZFIN|ZDB-GENE-040801-260	672	cux1b "cut-like homeobox 1b" [	0.922	0.883	0.289	1.1e-69
UNIPROTKB|H0YL76	633	CUX1 "Protein CASP" [Homo sapi	0.821	0.835	0.312	3.6e-66
UNIPROTKB|F1P4L9	620	Gga.43632 "Uncharacterized pro	0.835	0.867	0.295	4.7e-64
DICTYBASE|DDB_G0283375	861	scdA "similar to CCAAT displac	0.628	0.470	0.315	3e-63
SGD|S000001662	679	COY1 "Golgi membrane protein w	0.868	0.823	0.260	4.7e-48

TAIR|locus:2095012 CASP "AT3G18480" [Arabidopsis thaliana (taxid:3702)]

 Score = 2357 (834.8 bits), Expect = 1.3e-244, P = 1.3e-244
 Identities = 472/649 (72%), Positives = 538/649 (82%)

Query:     1 MEAPLGGSDRDK---PNTXXXXXXXX--XXNFWXXXXXXXXXXXXXXXXXXIAENQENSQ 55
             ME    GS+RDK   P++            NFW                  IAENQENSQ
Sbjct:     1 MEVSQDGSERDKTPPPSSSSSSSSPIPVVTNFWKEFDLEKEKSLLDEQGLRIAENQENSQ 60

Query:    56 KNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEA 115
             KNRRKLAESTRDFKKASPE KLS+FNSLLKGYQEEVDN+TKRAKFGENAFLNIYQKLYEA
Sbjct:    61 KNRRKLAESTRDFKKASPENKLSMFNSLLKGYQEEVDNITKRAKFGENAFLNIYQKLYEA 120

Query:   116 PDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIXXXXXXXXXXXX 175
             PDP+PALASIAEQD KLSE+ESENRKMK+ELEE+RTEATHLKNQQ+TI            
Sbjct:   121 PDPFPALASIAEQDRKLSEVESENRKMKVELEEFRTEATHLKNQQATIRRLEERNRQLEQ 180

Query:   176 XXXXXXXXXXXXXXRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQL 235
                           R LAEENQKT+E+L++REQALQDQLRQAKDSV+TMQKLHELAQ+QL
Sbjct:   181 QMEEKIKEVVEIKQRNLAEENQKTMELLKDREQALQDQLRQAKDSVSTMQKLHELAQNQL 240

Query:   236 FEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDT 295
             FE+RAQSDEE   KQSEV+LLMDEVERAQTRLL+L+REK  LRSQLQ+AN++  ++ SD 
Sbjct:   241 FELRAQSDEETAGKQSEVSLLMDEVERAQTRLLTLEREKGHLRSQLQTANEDTDNKKSDN 300

Query:   296 LDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDM 355
             +DSNS LENSL+AKEKIISELN E+HN+ETAL+NERE H+ EIKKLN+LL +K+  +E+M
Sbjct:   301 IDSNSMLENSLTAKEKIISELNMEIHNVETALANERESHVAEIKKLNSLLNKKDTIIEEM 360

Query:   356 KKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKME 415
             KKELQ RP++K+VDDLRKKVKILQAVGYNSIEAEDW+ AT  EEMSKMESLLLDKNRKME
Sbjct:   361 KKELQERPSAKLVDDLRKKVKILQAVGYNSIEAEDWDAATTGEEMSKMESLLLDKNRKME 420

Query:   416 HELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFD 475
             HE+TQLKV+LSEK SLLE AE K  ELTAK+NEQQ+LIQKLEDDILKGY SK+RKG +FD
Sbjct:   421 HEVTQLKVQLSEKASLLEKAEAKGEELTAKVNEQQRLIQKLEDDILKGYGSKERKGALFD 480

Query:   476 DWDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIG 535
             +W+ SEAG  E SE  D+KH   +QDQSSMLKVIC+QRDRFRARLRETEEE+R+LKEKIG
Sbjct:   481 EWEFSEAGVAEQSEPMDQKHVPSEQDQSSMLKVICSQRDRFRARLRETEEEIRRLKEKIG 540

Query:   536 VLTAELEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYE 595
              LT ELEKTKADNV+LYGKIR+VQDYN++KV+SRGSKKY EDLESGF+SD+ESKYKK+YE
Sbjct:   541 FLTDELEKTKADNVKLYGKIRYVQDYNHDKVVSRGSKKYVEDLESGFSSDVESKYKKIYE 600

Query:   596 DDINPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYNLLYLFLFS 644
             DDINPFAAFSKKER+QR K+LGIRDRITLSSGRFLLGNKY   + F ++
Sbjct:   601 DDINPFAAFSKKEREQRIKDLGIRDRITLSSGRFLLGNKYARTFAFFYT 649

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IDA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

UNIPROTKB|H0YMA9 CUX1 "Protein CASP" [Homo sapiens (taxid:9606)]

 Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
 Identities = 191/608 (31%), Positives = 321/608 (52%)

Query:    47 IAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFL 106
             +A  Q+ S+++R++L E +R+FKK +PE+       LLK +Q E+D L+KR+K  E AFL
Sbjct:    45 LANRQDESEQSRKRLIEQSREFKKNTPEDLRKQVAPLLKSFQGEIDALSKRSKEAEAAFL 104

Query:   107 NIYQKLYEAPDPYPALASIAEQDLK---LSELESENRKMKIELEEYRTEATHLKNQQSTI 163
             N+Y++L + PDP PAL    +  LK   L ++E+EN+K++  LEEY  E   +KNQ+ TI
Sbjct:   105 NVYKRLIDVPDPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTI 164

Query:   164 XXXXXXXXXXXXXXXXXXXXXXXXXXRGLAEENQKTLEILQEREQALQDQLRQAKDSVAT 223
                                       + L  +  +    LQE + +   +L +A+  V +
Sbjct:   165 KALKEKIREYEQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQS 224

Query:   224 MQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQS 283
             +Q   E  +++LF+++ + DEE  AK  E+ ++M ++ERA  R    QRE + LR QL S
Sbjct:   225 LQTALEKTRTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSS 284

Query:   284 AND--EAGSRNSDTLD--------SNSYLENSLSAKEKIISELNSELHNIETALSNEREQ 333
             AN   +  S+     D        + S LE  L+AKE+ I++L  ++  ++ +L+  RE 
Sbjct:   285 ANHSLQLASQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLREN 344

Query:   334 HMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEV 393
               ++I +L   L  K + L+ ++++L+ +      ++++K++ IL+     S+E    E 
Sbjct:   345 SASQISQLEQQLSAKNSTLKQLEEKLKGQAD---YEEVKKELNILK-----SMEFAPSEG 396

Query:   394 ATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLI 453
             A   +    +E LLL+KNR ++ E   L++  S+ +      + +I E  A   EQ++LI
Sbjct:   397 AGTQDAAKPLEVLLLEKNRSLQSENAALRISNSDLSGRCAELQVRITEAVATATEQRELI 456

Query:   454 QKLEDD--ILKGYSSKDRKGNVFDDWD-----LSEAGGTELSEKADKKHTYPDQDQSSML 506
              +LE D  I++     D +G      +     + EA        A      P+    S+L
Sbjct:   457 ARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIKEATALFYGPAAPASGALPEGQVDSLL 516

Query:   507 KVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNEKV 566
              +I +QR+RFRAR +E E E R  +  +  L +EL+  +ADN++L+ KI+F+Q Y     
Sbjct:   517 SIISSQRERFRARNQELEAENRLAQHTLQALQSELDSLRADNIKLFEKIKFLQSYPG--- 573

Query:   567 ISRGSKKYAEDLESGFTSDIESKYKKMYEDDINPFAAFSKKERDQRYKELGIRDRITLSS 626
               RGS         G + D E +Y   YE+ ++PF++FSK+ER ++Y  L   D+ TLS 
Sbjct:   574 --RGS---------G-SDDTELRYSSQYEERLDPFSSFSKRERQRKYLSLSPWDKATLSM 621

Query:   627 GRFLLGNK 634
             GR +L NK
Sbjct:   622 GRLVLSNK 629

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

GO:0030173 "integral to Golgi membrane" evidence=IEA

UNIPROTKB|Q13948 CUX1 "Protein CASP" [Homo sapiens (taxid:9606)]

 Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
 Identities = 191/608 (31%), Positives = 321/608 (52%)

Query:    47 IAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFL 106
             +A  Q+ S+++R++L E +R+FKK +PE+       LLK +Q E+D L+KR+K  E AFL
Sbjct:    31 LANRQDESEQSRKRLIEQSREFKKNTPEDLRKQVAPLLKSFQGEIDALSKRSKEAEAAFL 90

Query:   107 NIYQKLYEAPDPYPALASIAEQDLK---LSELESENRKMKIELEEYRTEATHLKNQQSTI 163
             N+Y++L + PDP PAL    +  LK   L ++E+EN+K++  LEEY  E   +KNQ+ TI
Sbjct:    91 NVYKRLIDVPDPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTI 150

Query:   164 XXXXXXXXXXXXXXXXXXXXXXXXXXRGLAEENQKTLEILQEREQALQDQLRQAKDSVAT 223
                                       + L  +  +    LQE + +   +L +A+  V +
Sbjct:   151 KALKEKIREYEQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQS 210

Query:   224 MQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQS 283
             +Q   E  +++LF+++ + DEE  AK  E+ ++M ++ERA  R    QRE + LR QL S
Sbjct:   211 LQTALEKTRTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSS 270

Query:   284 AND--EAGSRNSDTLD--------SNSYLENSLSAKEKIISELNSELHNIETALSNEREQ 333
             AN   +  S+     D        + S LE  L+AKE+ I++L  ++  ++ +L+  RE 
Sbjct:   271 ANHSLQLASQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLREN 330

Query:   334 HMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEV 393
               ++I +L   L  K + L+ ++++L+ +      ++++K++ IL+     S+E    E 
Sbjct:   331 SASQISQLEQQLSAKNSTLKQLEEKLKGQAD---YEEVKKELNILK-----SMEFAPSEG 382

Query:   394 ATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLI 453
             A   +    +E LLL+KNR ++ E   L++  S+ +      + +I E  A   EQ++LI
Sbjct:   383 AGTQDAAKPLEVLLLEKNRSLQSENAALRISNSDLSGRCAELQVRITEAVATATEQRELI 442

Query:   454 QKLEDD--ILKGYSSKDRKGNVFDDWD-----LSEAGGTELSEKADKKHTYPDQDQSSML 506
              +LE D  I++     D +G      +     + EA        A      P+    S+L
Sbjct:   443 ARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIKEATALFYGPAAPASGALPEGQVDSLL 502

Query:   507 KVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNEKV 566
              +I +QR+RFRAR +E E E R  +  +  L +EL+  +ADN++L+ KI+F+Q Y     
Sbjct:   503 SIISSQRERFRARNQELEAENRLAQHTLQALQSELDSLRADNIKLFEKIKFLQSYPG--- 559

Query:   567 ISRGSKKYAEDLESGFTSDIESKYKKMYEDDINPFAAFSKKERDQRYKELGIRDRITLSS 626
               RGS         G + D E +Y   YE+ ++PF++FSK+ER ++Y  L   D+ TLS 
Sbjct:   560 --RGS---------G-SDDTELRYSSQYEERLDPFSSFSKRERQRKYLSLSPWDKATLSM 607

Query:   627 GRFLLGNK 634
             GR +L NK
Sbjct:   608 GRLVLSNK 615

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

GO:0030173 "integral to Golgi membrane" evidence=IEA

MGI|MGI:88568 Cux1 "cut-like homeobox 1" [Mus musculus (taxid:10090)]

 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 186/609 (30%), Positives = 319/609 (52%)

Query:    47 IAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFL 106
             +A  Q+ S+++R++L E +R+FKK +PE+       LLK +Q E+D L+KR+K  E AFL
Sbjct:    31 LANRQDESEQSRKRLIEQSREFKKNTPEDLRKQVAPLLKSFQGEIDALSKRSKEAEAAFL 90

Query:   107 NIYQKLYEAPDPYPALASIAEQ-DLK---LSELESENRKMKIELEEYRTEATHLKNQQST 162
              +Y++L + PDP PAL  + +Q ++K   L ++E+EN+K++  LEEY  E   +KNQ+ T
Sbjct:    91 TVYKRLIDVPDPVPAL-DVGQQLEIKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVT 149

Query:   163 IXXXXXXXXXXXXXXXXXXXXXXXXXXRGLAEENQKTLEILQEREQALQDQLRQAKDSVA 222
             I                          + L  +  +    LQE + +   +L +A+  + 
Sbjct:   150 IKALKEKIREYEQTLKSQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKLQ 209

Query:   223 TMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQ 282
             T+Q   E  +++LF+++ + DEE  AK  E+ ++M ++ERA  R    QRE + LR QL 
Sbjct:   210 TLQTALEKTRTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLS 269

Query:   283 SAND--EAGSRNSDTLD--------SNSYLENSLSAKEKIISELNSELHNIETALSNERE 332
             SAN   +  S+     D        + S LE  L+AKE+ I++L  ++  ++ +L+  RE
Sbjct:   270 SANHSLQLASQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRE 329

Query:   333 QHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWE 392
                ++I +L   L  K + L+ ++++L+ +      ++++K++  L+     S+E    E
Sbjct:   330 NSASQISQLEQQLNAKNSTLKQLEEKLKGQAD---YEEVKKELNTLK-----SMEFAPSE 381

Query:   393 VATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKL 452
              A   +    +E LLL+KNR ++ E   L++  S+ +      +  + E TAK  EQ++L
Sbjct:   382 GAGTQDSTKPLEVLLLEKNRSLQSENATLRISNSDLSGRCAELQIHLTEATAKAVEQKEL 441

Query:   453 IQKLEDDI--LKGYSSKDRKGNVFDDWD-----LSEAGGTELSEKADKKHTYPDQDQSSM 505
             I +LE D+  ++     D +G      +     + EA             T P+    S+
Sbjct:   442 IARLEQDLSTIQSIQRPDAEGASEQGLEKIPEPIKEATALFYGPSMSSSGTLPEGQVDSL 501

Query:   506 LKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNEK 565
             L +I +QR+RFR R +E E E R  +  I  L +EL+  +ADN++L+ KI+F+Q Y    
Sbjct:   502 LSIISSQRERFRTRNQELEAESRMAQHTIQALQSELDSLRADNIKLFEKIKFLQSYPGRG 561

Query:   566 VISRGSKKYAEDLESGFTSDIESKYKKMYEDDINPFAAFSKKERDQRYKELGIRDRITLS 625
             +   GS             D E +Y   YE+ ++PF++FSK+ER ++Y  L   D+ TL 
Sbjct:   562 I---GS------------DDTELRYSSQYEERLDPFSSFSKRERQRKYLGLSPWDKATLG 606

Query:   626 SGRFLLGNK 634
              GR +L NK
Sbjct:   607 MGRLILSNK 615

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0000139 "Golgi membrane" evidence=ISO

GO:0000301 "retrograde transport, vesicle recycling within Golgi" evidence=ISO

GO:0001822 "kidney development" evidence=IGI

GO:0003677 "DNA binding" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030173 "integral to Golgi membrane" evidence=IEA

GO:0030324 "lung development" evidence=IMP

GO:0030674 "protein binding, bridging" evidence=ISO

GO:0042491 "auditory receptor cell differentiation" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|F1NGM7 Gga.43632 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
 Identities = 186/622 (29%), Positives = 325/622 (52%)

Query:    47 IAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFL 106
             +A  Q+ S+++R+KL E +R+FKK +PE+       LLK +Q E+D L KR+K  E AFL
Sbjct:    11 LANRQDESEQSRKKLIEQSREFKKNTPEDLRKQVAPLLKSFQGEIDALGKRSKEAEAAFL 70

Query:   107 NIYQKLYEAPDPYPALASIAEQDLKLS---ELESENRKMKIELEEYRTEATHLKNQQSTI 163
             N+Y++L + PDP PAL    +  LK+    ++E+EN+K++  LEEY  E   +KNQ+ TI
Sbjct:    71 NVYKRLIDVPDPVPALDLGQQLQLKVQRMHDIETENQKLRETLEEYNKEFAEVKNQEVTI 130

Query:   164 XXXXXXXXXXXXXXXXXXXXXXXXXXRGLAEENQKTLEILQEREQALQDQLRQAKDSVAT 223
                                       + L  +  +    LQE + +   +L +A+  V  
Sbjct:   131 KALKEKIREYEQTLKNQAENIALEKEQKLQNDFAEKERKLQETQMSTASKLEEAEHKVQA 190

Query:   224 MQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQS 283
             +Q   E  +++LF+++ + DEE  AK  E+ ++M ++ERA  R    QRE + LR QL S
Sbjct:   191 LQTALEKTRTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSS 250

Query:   284 AND--EAGSRNSDTLD--------SNSYLENSLSAKEKIISELNSELHNIETALSNEREQ 333
             AN   +  ++     D        + S LE  L+AKE+ I++L  ++  ++ +L+  RE 
Sbjct:   251 ANKSLQLATQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQGSLTKLREN 310

Query:   334 HMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEV 393
               ++I +L   L  K + L+ ++++L+ +      ++++K++ IL+++ +   E+     
Sbjct:   311 SSSQISQLEQQLTAKNSTLKQLEEKLKGQAD---YEEVKKELNILKSMEFAPPES----- 362

Query:   394 ATNDEEMSK-MESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKL 452
              +  ++ SK +E LLL+KNR ++ E   L++  S+ +      + ++ E  + +  Q++L
Sbjct:   363 -SGAQDASKPLEVLLLEKNRSLQSENATLRITNSDLSVRCAELQIQLTEAVSGLAGQKEL 421

Query:   453 IQKLEDDI-----LKGYSSKDRKGNVFDDWD-----LSEAGGTELSEKADKKHTYPDQDQ 502
             + KLE D+     L      D +G      +     + EA              +P+   
Sbjct:   422 VAKLEHDLSTIQALSAVHRPDAEGAAIPSLEKIPEPIKEATALFYGHPPSPSAPFPEGQV 481

Query:   503 SSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYN 562
              S+L +I +QR+RFRAR +E E E R ++  +  L +EL+  +ADN++LY KI+F+Q Y 
Sbjct:   482 DSLLSIISSQRERFRARNQELEGENRMMQHTVHALQSELDNLRADNIKLYEKIKFLQSYP 541

Query:   563 NEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINPFAAFSKKERDQRYKELGIRDRI 622
                   RGS +           D E +Y   YE+ ++PF++FS+KER ++Y  L   D+ 
Sbjct:   542 G-----RGSSR----------DDTELRYSSQYEERLDPFSSFSRKERQRKYLSLSPWDKA 586

Query:   623 TLSSGRFLLGNKYNLLYLFLFS 644
             TLS GR +L NK      F ++
Sbjct:   587 TLSMGRLILSNKTARTVAFFYT 608

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

GO:0030173 "integral to Golgi membrane" evidence=IEA

ZFIN|ZDB-GENE-040801-260 cux1b "cut-like homeobox 1b" [Danio rerio (taxid:7955)]

 Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
 Identities = 185/639 (28%), Positives = 330/639 (51%)

Query:    27 FWXXXXXXXXXXXXXXXXXXIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKG 86
             FW                  +A  Q++S+++R+KL + +R+FKK +PE+   L   LLK 
Sbjct:    11 FWKRFDLVQLQRELDSTATLLASRQDDSEQSRKKLIDQSREFKKNTPEDLRKLVAPLLKS 70

Query:    87 YQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALA---SIAEQDLKLSELESENRKMK 143
             +Q E+D L+KR+K  E AFLN+Y++L + PDP P L     + ++  +++++++EN+K++
Sbjct:    71 FQAEIDALSKRSKESETAFLNVYKRLIDVPDPVPVLELSQQLHQKVQRMNDIDTENQKLR 130

Query:   144 IELEEYRTEATHLKNQQSTIXXXXXXXXXXXXXXXXXXXXXXXXXXRGLAEENQKTLEIL 203
               LEEY  E   +KNQ+ TI                          + + ++  +    L
Sbjct:   131 ETLEEYNKEFAEVKNQEVTIKTLKEKIREYEQSMKNQAENLALEKQQQIHKDYTEKERRL 190

Query:   204 QEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERA 263
             QE +++L  +L++A+    T+Q   E  Q++LF+++ ++DEE  AK  E++++M ++ERA
Sbjct:   191 QESQESLVCKLQEAELKAQTLQTALERTQTELFDLKTKNDEESTAKADEIDMVMIDLERA 250

Query:   264 QTRLLSLQREKDLLRSQLQSA--NDEAGSRNSDT--------LDSNSYLENSLSAKEKII 313
               R  + +R  + LR QL  A  + +  +R  +T        L   S LE  LSAKE+ +
Sbjct:   251 NQRAEAAERAAEALREQLMLAGKSSQLPTRTDETPYADECVDLVPRSSLEAELSAKEREM 310

Query:   314 SELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRK 373
              +L  ++  ++ +LS  RE    +I +L   L  K  AL  ++++LQA+      ++++K
Sbjct:   311 LQLVEDVQRLQASLSALRENTHTQISQLQQQLTMKTTALTQLEEKLQAQAD---YEEVKK 367

Query:   374 KVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLE 433
             +  IL+++ +   +      A  D     +E LLL+KNR ++ E   L++  +E +    
Sbjct:   368 EFSILKSMEFGPRDGS----AVQDSS-KPLEVLLLEKNRSLQSENASLRIANTELSGRYA 422

Query:   434 TAEGKIAELTAKINEQQKLIQKLEDDI--LKGYSSKDRKGNVFDDWDLSEAGGTELSEKA 491
               + + +      ++Q++LI KLE D+  ++  S  D +G       + E     + E  
Sbjct:   423 CLQMEFSTAVQTTSDQKELILKLEQDLSTIQTMSRPDAEG-ADTSAVMRECVPDPIKEAT 481

Query:   492 DKKHTY---PDQDQS---SMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTK 545
                 +    P  DQ    S+L +I +QR+RFR+R +E E     L++ +  L +EL+  +
Sbjct:   482 ALFSSISGSPQADQGQMDSLLSIISSQRERFRSRNQELEVANSSLQQTLQALQSELDSLR 541

Query:   546 ADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINPFAAFS 605
             ADN++LY KI+F+Q Y                  +G + D   +Y   YE+ ++PF++FS
Sbjct:   542 ADNIKLYEKIKFLQSYPTR---------------AGDSDDTVMRYSSQYEERLDPFSSFS 586

Query:   606 KKERDQRYKELGIRDRITLSSGRFLLGNKYNLLYLFLFS 644
             KKER +RY+ L   D+ TLS GR +L NK      F ++
Sbjct:   587 KKERQRRYQSLSPWDKATLSLGRVILSNKTARTIAFFYT 625

GO:0030173 "integral to Golgi membrane" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|H0YL76 CUX1 "Protein CASP" [Homo sapiens (taxid:9606)]

 Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
 Identities = 179/572 (31%), Positives = 298/572 (52%)

Query:    83 LLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLK---LSELESEN 139
             LLK +Q E+D L+KR+K  E AFLN+Y++L + PDP PAL    +  LK   L ++E+EN
Sbjct:    22 LLKSFQGEIDALSKRSKEAEAAFLNVYKRLIDVPDPVPALDLGQQLQLKVQRLHDIETEN 81

Query:   140 RKMKIELEEYRTEATHLKNQQSTIXXXXXXXXXXXXXXXXXXXXXXXXXXRGLAEENQKT 199
             +K++  LEEY  E   +KNQ+ TI                          + L  +  + 
Sbjct:    82 QKLRETLEEYNKEFAEVKNQEVTIKALKEKIREYEQTLKNQAETIALEKEQKLQNDFAEK 141

Query:   200 LEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDE 259
                LQE + +   +L +A+  V ++Q   E  +++LF+++ + DEE  AK  E+ ++M +
Sbjct:   142 ERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRTELFDLKTKYDEETTAKADEIEMIMTD 201

Query:   260 VERAQTRLLSLQREKDLLRSQLQSAND--EAGSRNSDTLD--------SNSYLENSLSAK 309
             +ERA  R    QRE + LR QL SAN   +  S+     D        + S LE  L+AK
Sbjct:   202 LERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQAIEVLTRSSLEVELAAK 261

Query:   310 EKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVD 369
             E+ I++L  ++  ++ +L+  RE   ++I +L   L  K + L+ ++++L+ +      +
Sbjct:   262 EREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKGQAD---YE 318

Query:   370 DLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKT 429
             +++K++ IL+     S+E    E A   +    +E LLL+KNR ++ E   L++  S+ +
Sbjct:   319 EVKKELNILK-----SMEFAPSEGAGTQDAAKPLEVLLLEKNRSLQSENAALRISNSDLS 373

Query:   430 SLLETAEGKIAELTAKINEQQKLIQKLEDD--ILKGYSSKDRKGNVFDDWD-----LSEA 482
                   + +I E  A   EQ++LI +LE D  I++     D +G      +     + EA
Sbjct:   374 GRCAELQVRITEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIKEA 433

Query:   483 GGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELE 542
                     A      P+    S+L +I +QR+RFRAR +E E E R  +  +  L +EL+
Sbjct:   434 TALFYGPAAPASGALPEGQVDSLLSIISSQRERFRARNQELEAENRLAQHTLQALQSELD 493

Query:   543 KTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINPFA 602
               +ADN++L+ KI+F+Q Y       RGS         G + D E +Y   YE+ ++PF+
Sbjct:   494 SLRADNIKLFEKIKFLQSYPG-----RGS---------G-SDDTELRYSSQYEERLDPFS 538

Query:   603 AFSKKERDQRYKELGIRDRITLSSGRFLLGNK 634
             +FSK+ER ++Y  L   D+ TLS GR +L NK
Sbjct:   539 SFSKRERQRKYLSLSPWDKATLSMGRLVLSNK 570

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

GO:0030173 "integral to Golgi membrane" evidence=IEA

UNIPROTKB|F1P4L9 Gga.43632 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 173/586 (29%), Positives = 302/586 (51%)

Query:    83 LLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLS---ELESEN 139
             LLK +Q E+D L KR+K  E AFLN+Y++L + PDP PAL    +  LK+    ++E+EN
Sbjct:     9 LLKSFQGEIDALGKRSKEAEAAFLNVYKRLIDVPDPVPALDLGQQLQLKVQRMHDIETEN 68

Query:   140 RKMKIELEEYRTEATHLKNQQSTIXXXXXXXXXXXXXXXXXXXXXXXXXXRGLAEENQKT 199
             +K++  LEEY  E   +KNQ+ TI                          + L  +  + 
Sbjct:    69 QKLRETLEEYNKEFAEVKNQEVTIKALKEKIREYEQTLKNQAENIALEKEQKLQNDFAEK 128

Query:   200 LEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDE 259
                LQE + +   +L +A+  V  +Q   E  +++LF+++ + DEE  AK  E+ ++M +
Sbjct:   129 ERKLQETQMSTASKLEEAEHKVQALQTALEKTRTELFDLKTKYDEETTAKADEIEMIMTD 188

Query:   260 VERAQTRLLSLQREKDLLRSQLQSAND--EAGSRNSDTLD--------SNSYLENSLSAK 309
             +ERA  R    QRE + LR QL SAN   +  ++     D        + S LE  L+AK
Sbjct:   189 LERANQRAEVAQREAETLREQLSSANKSLQLATQIQKAPDVEQAIEVLTRSSLEVELAAK 248

Query:   310 EKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVD 369
             E+ I++L  ++  ++ +L+  RE   ++I +L   L  K + L+ ++++L+ +      +
Sbjct:   249 EREIAQLVEDVQRLQGSLTKLRENSSSQISQLEQQLTAKNSTLKQLEEKLKGQAD---YE 305

Query:   370 DLRKKVKILQAVGYNSIEAEDWEVATNDEEMSK-MESLLLDKNRKMEHELTQLKVKLSEK 428
             +++K++ IL+++ +   E+      +  ++ SK +E LLL+KNR ++ E   L++  S+ 
Sbjct:   306 EVKKELNILKSMEFAPPES------SGAQDASKPLEVLLLEKNRSLQSENATLRITNSDL 359

Query:   429 TSLLETAEGKIAELTAKINEQQKLIQKLEDDI-----LKGYSSKDRKGNVFDDWD----- 478
             +      + ++ E  + +  Q++L+ KLE D+     L      D +G      +     
Sbjct:   360 SVRCAELQIQLTEAVSGLAGQKELVAKLEHDLSTIQALSAVHRPDAEGAAIPSLEKIPEP 419

Query:   479 LSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLT 538
             + EA              +P+    S+L +I +QR+RFRAR +E E E R ++  +  L 
Sbjct:   420 IKEATALFYGHPPSPSAPFPEGQVDSLLSIISSQRERFRARNQELEGENRMMQHTVHALQ 479

Query:   539 AELEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDI 598
             +EL+  +ADN++LY KI+F+Q Y       RGS +           D E +Y   YE+ +
Sbjct:   480 SELDNLRADNIKLYEKIKFLQSYPG-----RGSSR----------DDTELRYSSQYEERL 524

Query:   599 NPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYNLLYLFLFS 644
             +PF++FS+KER ++Y  L   D+ TLS GR +L NK      F ++
Sbjct:   525 DPFSSFSRKERQRKYLSLSPWDKATLSMGRLILSNKTARTVAFFYT 570

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

GO:0030173 "integral to Golgi membrane" evidence=IEA

DICTYBASE|DDB_G0283375 scdA "similar to CCAAT displacement protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 489 (177.2 bits), Expect = 3.0e-63, Sum P(2) = 3.0e-63
 Identities = 134/425 (31%), Positives = 227/425 (53%)

Query:    51 QENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQ 110
             +E+  K+R+ LA+ T+DFKK + +EK+  F SLLK YQ+EVD LTKR+KF E  FL +Y+
Sbjct:   105 KEDCLKSRKVLAKQTQDFKKFTDDEKIKQFGSLLKLYQDEVDKLTKRSKFTETVFLGMYK 164

Query:   111 KLYEAPDPYPALASIAEQDLKLSE---LESENRKMKIELEEYRTEATHLKNQQSTIXXXX 167
              L E  DP PAL++  E+  K+ +   LE ENRK++++L +++ E   ++NQ+ TI    
Sbjct:   165 DLNEISDPVPALSAALEECSKVDQTTKLEIENRKLQMQLTDFKKEFQEIQNQEVTIRRLE 224

Query:   168 XXXXXXXXXXXXXXXXXXXXXX-RGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQK 226
                                    + L +E Q+ L+  ++REQ LQ Q  Q +D +  +  
Sbjct:   225 DKIKEMNSERSEFISMDKLNLKEQELKQEFQQQLQASKQREQQLQKQNDQLQDELTKISI 284

Query:   227 LHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAND 286
              +   Q+QL +++ + ++E  +K SE+ +L  E +R Q++L +LQRE   +R +     +
Sbjct:   285 TNNQIQNQLLDIKTKYEDELQSKHSEIEMLTVEFDRVQSKLTTLQRENLSIREESMVEKN 344

Query:   287 EAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLI 346
                       D    LE  +  KE   S+L  ++  ++T +S ++++  N + +L    I
Sbjct:   345 SLTPMVKRVAD----LELEMLQKETETSKLVDQIQELKTHISTQQDEKSN-LSRLYE--I 397

Query:   347 EKEAALEDMKKELQARPTSKMVDDLRKKVKILQA-VGYNSIEAE--DWEVATNDEEMSK- 402
             EKE  +E + K +Q  P+   V+ ++K++  L+A V  + I     D E   N    +  
Sbjct:   398 EKEK-VEKLDKYIQNNPSPSEVELIKKELLTLKAIVDQDEINKAIIDQEKDNNQNNTTNN 456

Query:   403 ----MESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLED 458
                  + LL DKNR++E+E T+L++  + + S L      I EL    +EQ  LIQ+LE+
Sbjct:   457 TGGGSDKLLKDKNRQLENECTRLRLLTNTQESELIEKNLAIDELQKVKDEQLLLIQRLEE 516

Query:   459 DILKG 463
             D+  G
Sbjct:   517 DLSNG 521

GO:0030173 "integral to Golgi membrane" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

SGD|S000001662 COY1 "Golgi membrane protein with similarity to mammalian CASP" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 163/625 (26%), Positives = 308/625 (49%)

Query:    47 IAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFL 106
             I + +  S  +R+ LA  T+ FKK  PEEKL+  N ++K YQ E+DNLT+R+KF E    
Sbjct:    32 IKDKETLSLNSRKSLATETKKFKKLEPEEKLNNVNKIIKQYQREIDNLTQRSKFSEKVLF 91

Query:   107 NIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIXXX 166
             ++Y+KL EAPDP P L S  E   KL +++ +++++K ++     +     + + T+   
Sbjct:    92 DVYEKLSEAPDPQPLLQSSLE---KLGKID-DSKELKEKISYLEDKLAKYADYE-TLKSR 146

Query:   167 XXXXXXXXXXXXXXXXXXXXXXXRGLAEENQKTLEILQEREQALQDQL----RQAKDSVA 222
                                        EE  +  +   ERE  L  QL     Q K   A
Sbjct:   147 LLDLEQSSAKTLAKRLTAKTQEINSTWEEKGRNWK---EREADLLKQLTNVQEQNKALEA 203

Query:   223 TMQKLHELAQSQLFEVRAQSDEERVAKQ-SEVNLLMDEVERAQTRLLSLQREKDLLRSQL 281
              + K  ++  +   +   +++++ V+ + +E NL+  E+E  Q R+  L++  + L   L
Sbjct:   204 KISKNIDIEGNGNEDGDQENNQKEVSTRIAEYNLVTQELETTQARIYQLEKRNEELSGAL 263

Query:   282 QSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQ--H-MNEI 338
               A  EA              E  L AKE  +++L SE   +  +   ER+   H +NE+
Sbjct:   264 AKATSEAEK------------ETELHAKELKLNQLESENALLSASYEQERKSTSHAINEL 311

Query:   339 KK-LNALLIEKEA---ALEDMKKELQARPT-SKMVDDLRKKVKILQAVGYNSIEAEDWEV 393
             K+ LN+++ E E+    LE ++++L      +K+ ++L    KI    G N  ++++ ++
Sbjct:   312 KEQLNSVVAESESYKSELETVRRKLNNYSDYNKIKEELSALKKI--EFGVNEDDSDN-DI 368

Query:   394 ATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLI 453
              + D+  +  ES LL  N+K++  L + + K + +       +  + +L  +I   ++  
Sbjct:   369 RSEDKNDNTFESSLLSANKKLQATLAEYRSKSTAQEEERNELKKSVDQLKQQIATLKEAN 428

Query:   454 QKLEDDILKGYSSKDRKGNVFDDWDLSEAGGT-ELSEKADKKHT-------YPDQ----- 500
             +KLE D+ K  +        F++     +G T +++ +   K +        P+      
Sbjct:   429 EKLETDLEKVENVSPH----FNETASMMSGVTRQMNNRTSHKMSPTSSIIGIPEDGELSG 484

Query:   501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQD 560
             +QS++L ++  QRDRFR+R  + E+++RQ   + G L  E+ K K DN +LY +IR++Q 
Sbjct:   485 NQSTILPIVTKQRDRFRSRNMDLEKQLRQGNSEKGKLKLEISKLKGDNTKLYERIRYLQS 544

Query:   561 YNNEKV-ISRGSKKYAEDLESGFTSDIESKYKKMYEDDINPFAAFSKKERDQ-RYKELGI 618
             YNN    +++ +++           D+ES+Y ++Y++ ++P A F + E +  + K+L  
Sbjct:   545 YNNNNAPVNQSTERI----------DVESQYSRVYDESLHPMANFRQNELNHYKNKKLSA 594

Query:   619 RDRITLSSGRFLLGNKYNLLYLFLF 643
              +++  S  + +L NK   + +FLF
Sbjct:   595 LEKLFSSFAKVILQNKMTRM-VFLF 618

GO:0003674 "molecular_function" evidence=ND

GO:0000139 "Golgi membrane" evidence=IEA;IGI

GO:0048193 "Golgi vesicle transport" evidence=IGI

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030173 "integral to Golgi membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LS42	CASP_ARATH	No assigned EC number	0.7919	1.0	0.9346	yes	no
Q13948	CASP_HUMAN	No assigned EC number	0.3167	0.9332	0.8864	yes	no
Q5R8V1	CASP_PONAB	No assigned EC number	0.3136	0.9332	0.8864	yes	no
P70403	CASP_MOUSE	No assigned EC number	0.3105	0.9332	0.8864	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	644
pfam08172	245	pfam08172, CASP_C, CASP C terminal	7e-55
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-11
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-10
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-06
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	4e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-05
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	1e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-05
PRK04863	1486	PRK04863, mukB, cell division protein MukB; Provis	6e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-04
PRK04863	1486	PRK04863, mukB, cell division protein MukB; Provis	2e-04
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	3e-04
COG1269	660	COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su	3e-04
pfam09726	680	pfam09726, Macoilin, Transmembrane protein	3e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-04
TIGR01843	423	TIGR01843, type_I_hlyD, type I secretion membrane	0.002
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.003
pfam13514	1118	pfam13514, AAA_27, AAA domain	0.003

>gnl|CDD|219737 pfam08172, CASP_C, CASP C terminal

 Score =  186 bits (475), Expect = 7e-55
 Identities = 76/216 (35%), Positives = 114/216 (52%), Gaps = 14/216 (6%)

Query: 432 LETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKA 491
           LE  + +++ L AK+ EQQ+L  KLE+D+              D+  +   G   +  + 
Sbjct: 1   LEELQKELSSLNAKLEEQQELNAKLENDLATVQDEISN-RRFNDNASMISGGTRRIPNRG 59

Query: 492 DKKHTYP-------DQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKT 544
                 P           SS+L +I +QRDRFR R  E EEE+R+  + I  L  ELE  
Sbjct: 60  GSGKLSPTSSIIGGPGGSSSILPIITSQRDRFRKRNTELEEELRKQNQTISSLRRELESL 119

Query: 545 KADNVQLYGKIRFVQDYN-----NEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDIN 599
           KADN++LY KIR++Q Y      ++  +S    + +     G + D+ES+Y K YE+ +N
Sbjct: 120 KADNIKLYEKIRYLQSYQGNSPPSDSAVSNSPGRSSLQPGPG-SIDVESRYSKAYEESLN 178

Query: 600 PFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKY 635
           PFAAF K+ER++ YK L   +RI LS  R +L N+ 
Sbjct: 179 PFAAFRKRERERAYKRLSPPERIFLSLTRAVLANRT 214

This domain is the C-terminal region of the CASP family of proteins. It is a Golgi membrane protein which is thought to have a role in vesicle transport. Length = 245

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 66.2 bits (162), Expect = 3e-11
 Identities = 62/317 (19%), Positives = 130/317 (41%), Gaps = 26/317 (8%)

Query: 125 IAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEI 184
           I E + K+ ELE +  +++  L E R E   L+ +   +R+  E   +    + + +  +
Sbjct: 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL 738

Query: 185 VEIKQRGLA---------EENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQL 235
               ++             E +  +E L+ER +  +++L +A+  +  ++   E  + +L
Sbjct: 739 EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL 798

Query: 236 FEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDT 295
             +R   DE     ++E+ LL +E    + RL SL+R       +L+   ++    + D 
Sbjct: 799 KALREALDE----LRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854

Query: 296 LDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDM 355
               + +E      E++ SEL +        L NER      +  L + L E    L ++
Sbjct: 855 ESLAAEIEELEELIEELESELEA--------LLNERASLEEALALLRSELEELSEELREL 906

Query: 356 KKELQA-----RPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDK 410
           + +            + +  L  +++ L+    N  E    E +   EE   +E+ + D 
Sbjct: 907 ESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDD 966

Query: 411 NRKMEHELTQLKVKLSE 427
             +    L +L+ K+ E
Sbjct: 967 EEEARRRLKRLENKIKE 983

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 63.5 bits (155), Expect = 2e-10
 Identities = 70/301 (23%), Positives = 134/301 (44%), Gaps = 17/301 (5%)

Query: 166 LEERNRQLE--QQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVAT 223
           L E  RQL+  ++  EK +   E+K    AE  +  L +L  R + L+++L + ++ +  
Sbjct: 195 LNELERQLKSLERQAEKAERYKELK----AELRELELALLVLRLEELREELEELQEELKE 250

Query: 224 MQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQS 283
            ++  E   ++L E+  + +E R+        L +E+E  Q  L +L  E   L  Q Q 
Sbjct: 251 AEEELEELTAELQELEEKLEELRLEVSE----LEEEIEELQKELYALANEISRLEQQKQI 306

Query: 284 ANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNA 343
             +   +      +  + LE   S  +++  EL  EL      L  E E    E+++L A
Sbjct: 307 LRERLANLERQLEELEAQLEELESKLDELAEELA-ELEEKLEELKEELESLEAELEELEA 365

Query: 344 LLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQA-VGYNSIEAEDWE--VATNDEEM 400
            L E E+ LE+++++L+       V  L  ++  L   +       E  E       +E+
Sbjct: 366 ELEELESRLEELEEQLETL--RSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI 423

Query: 401 SKMESLLLDKNRK-MEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDD 459
            ++   L +   K ++ EL +L+ +L E    LE  E  + EL  ++ E ++ +   E +
Sbjct: 424 EELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERE 483

Query: 460 I 460
           +
Sbjct: 484 L 484

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 62.4 bits (152), Expect = 5e-10
 Identities = 74/377 (19%), Positives = 152/377 (40%), Gaps = 31/377 (8%)

Query: 84   LKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMK 143
            LK  +EE+  L  + +  E    ++  +L                +  L EL  +  +++
Sbjct: 669  LKELEEELAELEAQLEKLEEELKSLKNELRSL-------------EDLLEELRRQLEELE 715

Query: 144  IELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEIL 203
             +LEE + E   L+ +     +L+ R  +LE+++EE  +E+ E+++R   EE ++ LE L
Sbjct: 716  RQLEELKRELAALEEEL---EQLQSRLEELEEELEELEEELEELQER--LEELEEELESL 770

Query: 204  QEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERA 263
            +E    L++++ + ++    +Q+  E  + +L E   + D      +S         ER 
Sbjct: 771  EEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQ----RRERL 826

Query: 264  QTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNI 323
            +  +  L+ E + L  +L    +E              L+  L   E    EL  EL  +
Sbjct: 827  EQEIEELEEEIEELEEKLDELEEELEELEK----ELEELKEELEELEAEKEELEDELKEL 882

Query: 324  ETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGY 383
            E     E+E+   E+++L + L E +  +E +++ L+         ++       +    
Sbjct: 883  E----EEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEE 938

Query: 384  NSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELT 443
                 E  E+    E + +    L   N +   E  +++ +  E  S  E  E    +L 
Sbjct: 939  YEDTLET-ELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLL 997

Query: 444  AKINEQQKLIQKLEDDI 460
              I E  K  ++   + 
Sbjct: 998  EVIEELDKEKRERFKET 1014

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 58.9 bits (143), Expect = 6e-09
 Identities = 59/310 (19%), Positives = 132/310 (42%), Gaps = 30/310 (9%)

Query: 127 EQDLKLSELESENRKMK--IELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEI 184
           E+  +   L  E R+ +    L+E        +  +  +  LEE   +L +++ E  K +
Sbjct: 208 EKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRL 267

Query: 185 VEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDE 244
            EI+Q  L E N+K  ++ +E +  +++++ + +  +A++++     + +L      ++E
Sbjct: 268 EEIEQL-LEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKEREL----EDAEE 322

Query: 245 ERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLEN 304
                ++E++ L+ E+E  +  +   ++ +D L  +     +E              L  
Sbjct: 323 RLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELED-----------LRA 371

Query: 305 SLSAKEKIISELNSELHNIETALS---NEREQHMNEIKKLNALLIEKEAALEDMKKELQA 361
            L   +K  +E   EL +    L     E  +   E+ +L   L      L D+   +  
Sbjct: 372 ELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAG 431

Query: 362 RPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKN---RKMEHEL 418
                   +  K+ K L+      I+ ++W++     ++SK E  L D      ++E EL
Sbjct: 432 IEAKINELEEEKEDKALE------IKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKEL 485

Query: 419 TQLKVKLSEK 428
           ++L+ +L+E 
Sbjct: 486 SKLQRELAEA 495

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 52.4 bits (126), Expect = 6e-07
 Identities = 79/349 (22%), Positives = 159/349 (45%), Gaps = 19/349 (5%)

Query: 123  ASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVK 182
             S   Q  +L ELE E  +++ +LE+   E   LKN+  ++  L E  R+  +++E +++
Sbjct: 660  RSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLE 719

Query: 183  EIVEIKQRGLAEENQ--KTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRA 240
            E+         E  Q    LE L+E  + L+++L + ++ +  +++  E  +  L +++ 
Sbjct: 720  ELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKE 779

Query: 241  QSDE---ERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLD 297
            + +E   +R A Q E+  L +E+E A+ RL +L+RE + L  + +    E      +  +
Sbjct: 780  EIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEE 839

Query: 298  SNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKK 357
                LE  L   E+ + EL  EL      L  E E+   E ++L   L E E   E++++
Sbjct: 840  ----LEEKLDELEEELEELEKEL----EELKEELEELEAEKEELEDELKELEEEKEELEE 891

Query: 358  ELQ------ARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKN 411
            EL+      A    ++     +  ++   +    +E  + E    +E    +E+ L  + 
Sbjct: 892  ELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREI 951

Query: 412  RKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDI 460
             ++E E+  L           E  E +  EL ++  + ++  +KL + I
Sbjct: 952  ERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVI 1000

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 50.1 bits (120), Expect = 3e-06
 Identities = 48/228 (21%), Positives = 98/228 (42%), Gaps = 39/228 (17%)

Query: 125 IAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEI 184
           + E + KL EL  E  +++ E+EE + E   L    + I RLE++            + +
Sbjct: 262 LQELEEKLEELRLEVSELEEEIEELQKE---LYALANEISRLEQQ-----------KQIL 307

Query: 185 VEIKQRGLA---------EENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQL 235
            E                EE +  L+ L E    L+++L + K+ + +++   E  +++L
Sbjct: 308 RERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL 367

Query: 236 FEVRAQSDE----------ERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN 285
            E+ ++ +E          +    + ++  L +E+ER + RL  L+  ++ L+ +++   
Sbjct: 368 EELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELL 427

Query: 286 DEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQ 333
            +        L +       L   E+ + EL  EL  +E AL   RE+
Sbjct: 428 KKLEEAELKELQAE------LEELEEELEELQEELERLEEALEELREE 469

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 50.1 bits (120), Expect = 3e-06
 Identities = 57/243 (23%), Positives = 112/243 (46%), Gaps = 16/243 (6%)

Query: 123 ASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVK 182
             + E + ++ EL+SE  +++ ELEE + E   LK +   I  LE     L +++EE   
Sbjct: 260 EELEEAEKEIEELKSELEELREELEELQEELLELKEE---IEELEGEISLLRERLEELEN 316

Query: 183 EIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQS 242
           E+ E+         ++ LE L+E+ +AL+++L + +  +  +++L    +    E+  + 
Sbjct: 317 ELEEL---------EERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKL 367

Query: 243 DEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAG---SRNSDTLDSN 299
                  +     L +E+   +  L  ++ E + L+ +++S  +       R  D  +  
Sbjct: 368 SALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEEL 427

Query: 300 SYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKEL 359
             LE  L   +  + ELN EL  +E  L   R++   E+++  A L E+   LE     L
Sbjct: 428 KELEAELEELQTELEELNEELEELEEQLEELRDRLK-ELERELAELQEELQRLEKELSSL 486

Query: 360 QAR 362
           +AR
Sbjct: 487 EAR 489

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 49.8 bits (119), Expect = 4e-06
 Identities = 91/443 (20%), Positives = 184/443 (41%), Gaps = 21/443 (4%)

Query: 32  DLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEV 91
           +LE + S L E    + E  E   K  +KL E   + ++   E+++      L   +EE 
Sbjct: 189 ELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEK 248

Query: 92  DNLTKRAKFGENAFLNIYQKLYEAPDPY----PALASIAEQDLKLSELESENRKMKIELE 147
           + L +             + L    +        L  + E+  +L ELE E  +++ ELE
Sbjct: 249 ERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELE 308

Query: 148 EYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQR-----GLAEENQKTLEI 202
             R     L+     ++ LEER  +LE+++E+   E+ E+ +       L EE  K LE 
Sbjct: 309 GLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEE 368

Query: 203 LQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVER 262
             E  +   ++  +    +    +  +   ++L     +  EE    + E+  L  E+E 
Sbjct: 369 RLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEE 428

Query: 263 AQTRLLSLQREKDLLRSQLQSANDEAGSRNS----DTLDSNSYLENSLSAKEKIISELNS 318
            +  +  L+ + + L S+     + AG+              + +  L   E  + EL  
Sbjct: 429 LEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEE 488

Query: 319 ELHNIETA--LSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVK 376
           EL   +    L  E E+   E+++L   LIE     E +K+EL+ +   K+ + L +  +
Sbjct: 489 ELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEK-LEKLENLLEELEE 547

Query: 377 ILQAVGYNSIEAEDWEVATNDEEMSKMESLL--LDKNRKMEHELTQLKVKLSEKTSLLET 434
           + + +    ++    E+   ++ + +++ LL  L   R  + EL +L+ +L E    L+ 
Sbjct: 548 LKEKLQLQQLKE---ELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKE 604

Query: 435 AEGKIAELTAKINEQQKLIQKLE 457
            E ++++L   +   +    + E
Sbjct: 605 LEERLSQLEELLQSLELSEAENE 627

Length = 908

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 49.7 bits (119), Expect = 5e-06
 Identities = 64/357 (17%), Positives = 147/357 (41%), Gaps = 29/357 (8%)

Query: 194  EENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQ---SQLFEVRAQSDEERVAKQ 250
             E +  LE L+E  ++L+++LR  +D +  +++  E  +    +L    A  +EE    Q
Sbjct: 677  AELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQ 736

Query: 251  SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKE 310
            S +  L +E+E  +  L  LQ   + L  +L+S  +       +  +     +      E
Sbjct: 737  SRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELE 796

Query: 311  KI---ISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKM 367
            ++   + E    L  +E  L +  ++     +++  L  E E   E +            
Sbjct: 797  ELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKL------------ 844

Query: 368  VDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSE 427
             D+L ++++ L+      +E    E+   + E  ++E  L    +++E E  +L+ +L E
Sbjct: 845  -DELEEELEELE----KELEELKEELEELEAEKEELEDEL----KELEEEKEELEEELRE 895

Query: 428  KTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTEL 487
              S L   + +I +L  ++ E +  +++LE ++ +     + +     + +L      E 
Sbjct: 896  LESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELERE--IER 953

Query: 488  SEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKT 544
             E+  +     +       + +  + +  +++  + EE   +L E I  L  E  + 
Sbjct: 954  LEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRER 1010

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.6 bits (116), Expect = 1e-05
 Identities = 75/339 (22%), Positives = 160/339 (47%), Gaps = 22/339 (6%)

Query: 131 KLSELESENRKMKIELEEYRTEATHLKNQQSTIRR---LEERNRQLEQQMEEKVKEIVEI 187
           KL   E    +++  LEE   +   L+ Q     R   L+   R+LE  +     + +  
Sbjct: 180 KLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRK 239

Query: 188 KQRGLAEE---NQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDE 244
           +   L EE    ++ LE LQE  +  + ++ + K  +  +++  E  Q +L E++ + +E
Sbjct: 240 ELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEE 299

Query: 245 ERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLEN 304
                + E++LL + +E  +  L  L+   + L+ ++++  +E   R +   +    L  
Sbjct: 300 ----LEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAE 355

Query: 305 SLSAKEKIISELNSELHNIETALSNERE---QHMNEIKKLNALLIEKEAALEDMKKELQA 361
              AKE++  +L++ L  +E      RE   +   E+ ++   L E +  +E +++ L+ 
Sbjct: 356 LEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLER 415

Query: 362 RPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLL---LDKNRKMEHEL 418
              S+ ++DL++++K L+A     +E    E+   +EE+ ++E  L    D+ +++E EL
Sbjct: 416 --LSERLEDLKEELKELEA----ELEELQTELEELNEELEELEEQLEELRDRLKELEREL 469

Query: 419 TQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLE 457
            +L+ +L      L + E ++  L A+    Q +   LE
Sbjct: 470 AELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLE 508

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 58/248 (23%), Positives = 111/248 (44%), Gaps = 12/248 (4%)

Query: 32  DLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPE--EKLSLFNSLLKGYQE 89
           +LE+E   L E   ++ E  E+ ++   KL E   + ++      E+L      L+  + 
Sbjct: 748 ELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAER 807

Query: 90  EVDNLTKRAKFGENAFLNIYQKLYEAPDPY-PALASIAEQDLKLSELESENRKMKIELEE 148
            +D L +  +  E     + Q++ E  +        + E + +L ELE E  ++K ELEE
Sbjct: 808 RLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEE 867

Query: 149 YRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQ 208
              E    +  +  ++ LEE   +LE+++ E   E+ E+K     EE +K  E L+E E 
Sbjct: 868 LEAE---KEELEDELKELEEEKEELEEELRELESELAELK-----EEIEKLRERLEELEA 919

Query: 209 ALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLL-MDEVERAQTRL 267
            L+    +  +    +++ +E       E   +  EE +     VNL  ++E E  + R 
Sbjct: 920 KLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERY 979

Query: 268 LSLQREKD 275
             L+ +++
Sbjct: 980 EELKSQRE 987

Length = 1163

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 48.0 bits (115), Expect = 1e-05
 Identities = 33/144 (22%), Positives = 70/144 (48%), Gaps = 25/144 (17%)

Query: 126 AEQDLKLSELESENRKMKIELE------EYRTEA-THLKNQQSTIRRLEERNRQLEQQME 178
           A++ ++ ++ E+E  K +  LE      + R E    LK +++ ++RLE R  Q E+ ++
Sbjct: 34  AKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLD 93

Query: 179 EKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEV 238
            K+            E   K  E L+++E+ L ++ +   +    +++L    + +L  +
Sbjct: 94  RKM------------ESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERI 141

Query: 239 RAQSDEERVAKQSEVNLLMDEVER 262
              + EE  AK+    +L++EVE 
Sbjct: 142 SGLTQEE--AKE----ILLEEVEE 159

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 57/262 (21%), Positives = 115/262 (43%), Gaps = 26/262 (9%)

Query: 200 LEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDE 259
           L+ L+ER + L+ +L   +  +  ++        +L +  + +  +    + E+  L  E
Sbjct: 676 LQRLRERLEGLKRELSSLQSELRRIENR----LDELSQELSDASRKIGEIEKEIEQLEQE 731

Query: 260 VERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSE 319
            E+ + RL  L+ +   L  ++++   E              LE  +   E+ + +L   
Sbjct: 732 EEKLKERLEELEEDLSSLEQEIENVKSEL-----------KELEARIEELEEDLHKLEEA 780

Query: 320 LHNIETALSNER-EQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKIL 378
           L+++E  LS+ R  +   E+ KL   +   EA L +++++L      K    L K+++ L
Sbjct: 781 LNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEY--LEKEIQEL 838

Query: 379 QAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGK 438
           Q       +  D +      E  K    L  K  ++E EL +L+  L +  S L   + +
Sbjct: 839 QE------QRIDLKEQIKSIE--KEIENLNGKKEELEEELEELEAALRDLESRLGDLKKE 890

Query: 439 IAELTAKINEQQKLIQKLEDDI 460
             EL A++ E ++ I++LE  I
Sbjct: 891 RDELEAQLRELERKIEELEAQI 912

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 68/297 (22%), Positives = 123/297 (41%), Gaps = 54/297 (18%)

Query: 258 DEVERAQTRLLSLQREKDLLRSQL---QSANDEAGSRNSDTLDSNSYLENSLSAKEKIIS 314
            E++R + RL  L+RE   L+S+L   ++  DE     SD       +E  +   E+   
Sbjct: 674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEE 733

Query: 315 ELNSELHNIET---ALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDL 371
           +L   L  +E    +L  E E   +E+K+L A + E E  L  +++ L            
Sbjct: 734 KLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEAL------------ 781

Query: 372 RKKVKILQAVGYNSIEAE--DWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKT 429
                       N +EA      +     E+SK+E    ++  ++E  L +++ KL+  T
Sbjct: 782 ------------NDLEARLSHSRIPEIQAELSKLE----EEVSRIEARLREIEQKLNRLT 825

Query: 430 SLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSE 489
              E  E +I EL  +  + ++ I+ +E +I                 +       EL E
Sbjct: 826 LEKEYLEKEIQELQEQRIDLKEQIKSIEKEI-----------------ENLNGKKEELEE 868

Query: 490 KADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546
           +  ++     +D  S L  +  +RD   A+LRE E ++ +L+ +I      L + KA
Sbjct: 869 EL-EELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKA 924

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional

 Score = 46.1 bits (110), Expect = 6e-05
 Identities = 48/245 (19%), Positives = 104/245 (42%), Gaps = 42/245 (17%)

Query: 103  NAFLNIYQKLYEAPDPYPALASIA----EQDLKLSELESENRKMKIELEEYRTEATHLKN 158
            + F+  +  +    DP   L  +     E +  L++ ES+ +       + R++    K 
Sbjct: 820  SRFIGSHLAVAFEADPEAELRQLNRRRVELERALADHESQEQ-------QQRSQLEQAKE 872

Query: 159  QQSTIRRLE------------ERNRQLEQQMEEKVKEIVEIKQRG-LAEENQKTLEILQE 205
              S + RL             +R  ++ +Q++E  +    ++Q G    + +  + +LQ 
Sbjct: 873  GLSALNRLLPRLNLLADETLADRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSVLQS 932

Query: 206  REQ---ALQDQLRQAKDSVATMQKLHELAQSQLFEVRA----QSDEERVAKQSEVNLLMD 258
              +    L+   +QA+ +    ++    A +++ + RA    +   E +AK S++N    
Sbjct: 933  DPEQFEQLKQDYQQAQQTQRDAKQ-QAFALTEVVQRRAHFSYEDAAEMLAKNSDLN---- 987

Query: 259  EVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNS 318
              E+ + RL   ++E+   R QL+ A  +    N         L++S  AK +++ EL  
Sbjct: 988  --EKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLAS----LKSSYDAKRQMLQELKQ 1041

Query: 319  ELHNI 323
            EL ++
Sbjct: 1042 ELQDL 1046

Length = 1486

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 45.8 bits (109), Expect = 7e-05
 Identities = 66/352 (18%), Positives = 131/352 (37%), Gaps = 63/352 (17%)

Query: 194 EENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEER---VAKQ 250
           EE ++ +E L+E+   L+  L + +  +  +++  E  + +L E+  Q    R      +
Sbjct: 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE 739

Query: 251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKE 310
           +EV  L + + +    L  L+ E + L  +L+ A +E            +  E  +   E
Sbjct: 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEEL-----------AEAEAEIEELE 788

Query: 311 KIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDD 370
             I +L  EL  +  AL   R +       LN         LE +++ + A  T + ++D
Sbjct: 789 AQIEQLKEELKALREALDELRAEL----TLLNEEAANLRERLESLERRIAA--TERRLED 842

Query: 371 LRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTS 430
           L ++++ L             ++ +   E+ ++E L+     ++E EL  L  + +    
Sbjct: 843 LEEQIEELSE-----------DIESLAAEIEELEELI----EELESELEALLNERASLEE 887

Query: 431 LLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEK 490
            L     ++ EL+ ++ E +    +L                             EL E 
Sbjct: 888 ALALLRSELEELSEELRELESKRSELRR---------------------------ELEEL 920

Query: 491 ADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELE 542
            +K     +     +   I N ++R       T EE   L+ KI     E  
Sbjct: 921 REKLAQL-ELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEAR 971

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 48/220 (21%), Positives = 99/220 (45%), Gaps = 28/220 (12%)

Query: 328 SNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIE 387
             E E+   +I++L   + E E AL +++KEL+      + ++L +  K L+      + 
Sbjct: 676 RREIEELEEKIEELEEKIAELEKALAELRKELEE-----LEEELEQLRKELE-----ELS 725

Query: 388 AEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKIN 447
            +   +  +   +      L ++  ++  ELT+L+ ++ E    LE AE ++AE  A+I 
Sbjct: 726 RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIE 785

Query: 448 EQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLK 507
           E +  I++L++++     + D                T L+E+A         +    L+
Sbjct: 786 ELEAQIEQLKEELKALREALDELRAEL----------TLLNEEA--------ANLRERLE 827

Query: 508 VICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKAD 547
            +  +      RL + EE++ +L E I  L AE+E+ +  
Sbjct: 828 SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEEL 867

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional

 Score = 44.2 bits (105), Expect = 2e-04
 Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 13/136 (9%)

Query: 164 RRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVAT 223
           R   E   +L +++    +++   + R    E  + L  L E E  L+   + A D +  
Sbjct: 282 RVHLEEALELRRELYTSRRQLAAEQYR--LVEMARELAELNEAESDLEQDYQAASDHLNL 339

Query: 224 MQKLHELAQSQLFEVRAQSD----EERVAKQSEVNLLMDE-VERAQTRLLSLQREKDLLR 278
           +Q      + Q    R Q+D    EER+ +Q+EV    DE  E  + R  + + E D L+
Sbjct: 340 VQ---TALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELK 396

Query: 279 SQL---QSANDEAGSR 291
           SQL   Q A D   +R
Sbjct: 397 SQLADYQQALDVQQTR 412

Length = 1486

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 45/248 (18%), Positives = 91/248 (36%), Gaps = 21/248 (8%)

Query: 121 ALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEK 180
           A  ++ +  L L  L++E + +K +LE    E       Q  +R+L+ + +QL +Q    
Sbjct: 647 ARTALKQARLDLQRLQNEQQSLKDKLELAIAERKQQAETQ--LRQLDAQLKQLLEQQ--- 701

Query: 181 VKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRA 240
            +  +E  +    E   + L   Q  E  L +QL Q   ++   +   +    +L +   
Sbjct: 702 -QAFLEALKDDFRELRTERLAKWQVVEGELDNQLAQLSAAIEAARTQAKARLKELKKQYD 760

Query: 241 QS------DEERVAK-QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNS 293
           +       D   V + + ++  L   +ER   R   ++  +  ++               
Sbjct: 761 RELASLDVDPNTVKELKRQIEELETTIERIAVRRPEVREYRAFMQETW--------LHRD 812

Query: 294 DTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALE 353
              +    L   L   E    EL  EL  +       R++   E K L   L + +  L 
Sbjct: 813 SLREERPNLAIQLRELESSAEELQQELTRLIKDTKLRRKKLEQERKALEKQLDQLDELLR 872

Query: 354 DMKKELQA 361
            ++ E++ 
Sbjct: 873 GLRDEMRQ 880

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 54/285 (18%), Positives = 107/285 (37%), Gaps = 30/285 (10%)

Query: 122 LASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKV 181
           L S+   + +L  L  E  K++ EL+         +        +EE  R+LE+++ E  
Sbjct: 70  LRSVKGLEGRLFILPEEVEKLEAELKSLEEVIKPAE---KFSSEVEELTRKLEERLSELD 126

Query: 182 KEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQ 241
           +E+ +++      E    L+      + L               K   +       VR +
Sbjct: 127 EELEDLEDLLEELEPLAYLDFDLSLLRGL---------------KFLLVRLGL---VRRE 168

Query: 242 SDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSY 301
             E  V    +   L  E   A   ++     +DL +  +    +E G    +  + +  
Sbjct: 169 KLEALVGVIEDEVALYGENVEASVVIVVAHGAEDLDK--VSKILNELGFELYEVPEFDGG 226

Query: 302 LENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQA 361
               +S  E++I+E+  EL ++ + L    E+   E+  +  +L E E AL D+  +L  
Sbjct: 227 PSELISELEEVIAEIQDELESLRSELEALAEKIAEELLAVREIL-EIEKALGDVLSKLAR 285

Query: 362 RPTSKMV------DDLRKKVKILQAVGYNSIEAEDWEVATNDEEM 400
              +  +      D++ K  KI+      +   E  E   + EE+
Sbjct: 286 TEYTLAIEGWVPADEVEKLKKIINRATGGAAYFEVSETDEDKEEV 330

Length = 660

>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 51/238 (21%), Positives = 106/238 (44%), Gaps = 26/238 (10%)

Query: 132 LSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRG 191
           +  LE + +K++ EL++ R   + L+NQ S +  L ER+ + +    +K  ++++ K   
Sbjct: 408 IERLEQDIKKLQAELQQARQNESELRNQISLLTSL-ERSLKSDLGQLKKENDMLQTKLNS 466

Query: 192 LAEENQK---TLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVA 248
           +    QK   +++ +++R ++  D    A+  +A  +K  +  +       AQ+   R  
Sbjct: 467 MVSAKQKDKQSMQSMEKRLKSEADSRVNAEKQLAEEKKRKKEEEETAARAAAQAAASREE 526

Query: 249 K----QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGS-RNSDTL------- 296
                +     L  E+++ +  L   + E  +L  + Q       S + ++ L       
Sbjct: 527 CAESLKQAKQDLEMEIKKLEHDLKLKEEECRMLEKEAQELRKYQESEKETEVLMSALQAM 586

Query: 297 -DSNSYLENSLSAKEKIISELNSELHNIETALS------NEREQHMNEIKKLNALLIE 347
            D N  LENSLSA+ ++  +L S L +++  L        +RE    EI  L + + +
Sbjct: 587 QDKNLMLENSLSAETRLKLDLFSALGDVKRQLEIAHGAIYKREA---EIVDLKSKIAD 641

This entry is a highly conserved protein present in eukaryotes. Length = 680

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.4 bits (100), Expect = 9e-04
 Identities = 66/335 (19%), Positives = 142/335 (42%), Gaps = 35/335 (10%)

Query: 121  ALASIAEQDLKLSELESENRKMKIELEEYRTEATHLK----NQQSTIRRLEERNRQLEQQ 176
            A   I E + ++ +LE E  K+K  LEE   + + L+    N +S ++ LE R  +LE+ 
Sbjct: 714  ASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEED 773

Query: 177  MEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLF 236
            + +  + + +++ R       +    L + E+ +     + ++    + +L    +  L 
Sbjct: 774  LHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKE-YLE 832

Query: 237  EVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTL 296
            +   +  E+R+  + ++  +  E+E    +   L+ E + L + L+      G    +  
Sbjct: 833  KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERD 892

Query: 297  DSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMK 356
            +    LE  L   E+ I EL +++         ++ + ++E+K     L E+ + +ED K
Sbjct: 893  E----LEAQLRELERKIEELEAQI--------EKKRKRLSELKAKLEALEEELSEIEDPK 940

Query: 357  KELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEH 416
             E +  P  ++   L      LQ V                EE+  +E + +   ++ E 
Sbjct: 941  GEDEEIPEEEL--SLEDVQAELQRVE---------------EEIRALEPVNMLAIQEYEE 983

Query: 417  ELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQK 451
             L +L  +L EK + LE     I E   +  ++++
Sbjct: 984  VLKRLD-ELKEKRAKLEEERKAILERIEEYEKKKR 1017

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 36/183 (19%), Positives = 82/183 (44%), Gaps = 20/183 (10%)

Query: 103 NAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQST 162
           ++   I           PA+  +    +K  +   E+RK  +  +     A  +K  ++ 
Sbjct: 105 DSQAAIEFPDDLLSAEDPAVPEL----IKGQQSLFESRKSTLRAQLELILA-QIKQLEAE 159

Query: 163 IRRLEERNRQLEQQME---EKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKD 219
           +  L+ + + L QQ+E   E+++   ++K++GL    +  LE        L+ +  +A+ 
Sbjct: 160 LAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLE-LLE--------LERERAEAQG 210

Query: 220 SVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRS 279
            +  ++   E+ + Q+ E++ +  +     + EV   ++E+  AQ RL  L+   +  R 
Sbjct: 211 ELGRLEAELEVLKRQIDELQLERQQIEQTFREEV---LEELTEAQARLAELRERLNKARD 267

Query: 280 QLQ 282
           +LQ
Sbjct: 268 RLQ 270

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins [Protein fate, Protein and peptide secretion and trafficking]. Length = 423

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 73/362 (20%), Positives = 153/362 (42%), Gaps = 34/362 (9%)

Query: 123 ASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTI--------------RRLEE 168
             + E   +++E+ SE  +++ ELE+   E   L+  +  I              R+LEE
Sbjct: 200 KELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEE 259

Query: 169 RNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLH 228
           + R+LE+++EE  KEI E++++    +  K L+   E    L +   +  D +  ++K  
Sbjct: 260 KIRELEERIEELKKEIEELEEK---VKELKELKEKAEEYIKLSEFYEEYLDELREIEKRL 316

Query: 229 ELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA 288
              + ++  +  +  +E   K+  +  L  +++  + RL  L+   +L         +  
Sbjct: 317 SRLEEEINGIEERI-KELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELE 375

Query: 289 GSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEK 348
             +   T  +   LE  L   EK   E+  E+  I   +   +     EIK+L   + E 
Sbjct: 376 RLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELK----KEIKELKKAIEEL 431

Query: 349 EAA-----------LEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATND 397
           + A            E+ +KEL    T+++    ++  +I +       E  + E     
Sbjct: 432 KKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKK 491

Query: 398 EEMSKMESLLLDKNRKMEHELTQLKV-KLSEKTSLLETAEGKIAELTAKINEQQKLIQKL 456
           E        L ++ +++E +L +  + +L +K    E  + K+ +L  +I   +K ++KL
Sbjct: 492 ESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKL 551

Query: 457 ED 458
           E+
Sbjct: 552 EE 553

Length = 880

>gnl|CDD|205692 pfam13514, AAA_27, AAA domain

 Score = 40.5 bits (95), Expect = 0.003
 Identities = 71/343 (20%), Positives = 137/343 (39%), Gaps = 25/343 (7%)

Query: 123 ASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVK 182
           A I E  LK    +   + +  E EE          Q    ++  ER R+L   + E  +
Sbjct: 164 AEIREVQLKTRTWKDLVKALD-EAEEELANLRKELRQLEKEKQRLERLRRLLPLLAE--R 220

Query: 183 EIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQS 242
           + +E +   L E      + ++  E+A  + LR A+ ++  + +  E  Q++L E+    
Sbjct: 221 KALEQQLAALGEVIDLPPDAVERYEEARAE-LRAARRNLELLTERLEALQAELDEISLDE 279

Query: 243 DE-ERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSY 301
           +   + A    ++    E   A+  L   + E    R    +   + G       ++   
Sbjct: 280 ELLAQAAAIEALHQQRGEYRNAEQDLPDREGEIANAREAAAALLAQIGPDA--DEEAVES 337

Query: 302 LENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQA 361
           L  SL+AKE +            T L   +E     +K     L E+E  L+ ++ +L A
Sbjct: 338 LRPSLAAKETV------------TELEKRKEALDQALKSARDALEERERELKQVRAQLAA 385

Query: 362 RPTSKMVDDLRKKVKILQAVG--YNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELT 419
            PT  + + LR  +      G    ++ A + EVA    E+++  S L      +E EL 
Sbjct: 386 LPTVTVPEPLRAALADALRAGDIDAALAALEQEVAVAKRELAQALSRLGLWRGDLE-ELV 444

Query: 420 QLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILK 462
            L V  +E+   ++    +  E+     +++  + +LE+D+  
Sbjct: 445 ALPVPSAEQ---VQAFLKEAEEIMQAKRQKRDRLLELEEDLET 484

This domain is found in a number of double-strand DNA break proteins. This domain contains a P-loop motif. Length = 1118

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	644
KOG0963	629	consensus Transcription factor/CCAAT displacement	100.0
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	100.0
KOG0971	1243	consensus Microtubule-associated protein dynactin	99.31
PRK02224	880	chromosome segregation protein; Provisional	99.01
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.0
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.9
PRK02224	880	chromosome segregation protein; Provisional	98.89
PRK03918	880	chromosome segregation protein; Provisional	98.86
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.85
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.76
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.75
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.7
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.69
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.67
KOG0963	629	consensus Transcription factor/CCAAT displacement	98.66
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.64
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.58
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.57
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.56
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.5
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.47
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.41
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.35
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.31
PRK03918	880	chromosome segregation protein; Provisional	98.29
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.27
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.26
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.21
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.2
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	98.19
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.15
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	97.99
KOG0996	1293	consensus Structural maintenance of chromosome pro	97.96
PRK01156	895	chromosome segregation protein; Provisional	97.9
KOG0933	1174	consensus Structural maintenance of chromosome pro	97.79
PRK04863	1486	mukB cell division protein MukB; Provisional	97.76
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	97.71
PRK04863	1486	mukB cell division protein MukB; Provisional	97.7
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.69
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.68
KOG1937	521	consensus Uncharacterized conserved protein [Funct	97.65
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	97.61
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.59
PRK11281	1113	hypothetical protein; Provisional	97.57
PHA02562	562	46 endonuclease subunit; Provisional	97.55
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	97.51
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.5
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.45
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	97.45
PHA02562	562	46 endonuclease subunit; Provisional	97.45
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.44
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.41
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	97.34
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.33
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.26
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.23
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	97.22
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.21
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.21
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.2
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	97.19
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	97.19
KOG0996	1293	consensus Structural maintenance of chromosome pro	97.16
KOG0964	1200	consensus Structural maintenance of chromosome pro	97.13
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.13
PRK11637	428	AmiB activator; Provisional	97.11
KOG1003	205	consensus Actin filament-coating protein tropomyos	97.1
KOG4673	961	consensus Transcription factor TMF, TATA element m	97.06
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	96.97
PRK11637	428	AmiB activator; Provisional	96.86
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	96.75
KOG0933	1174	consensus Structural maintenance of chromosome pro	96.68
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	96.63
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.62
PRK01156	895	chromosome segregation protein; Provisional	96.61
PRK04778	569	septation ring formation regulator EzrA; Provision	96.58
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	96.49
PF13514	1111	AAA_27: AAA domain	96.45
PRK11281	1113	hypothetical protein; Provisional	96.43
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	96.42
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	96.41
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	96.39
KOG4673	961	consensus Transcription factor TMF, TATA element m	96.36
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	96.23
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	96.09
PRK10698	222	phage shock protein PspA; Provisional	95.99
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	95.98
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	95.92
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	95.88
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.88
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	95.77
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	95.76
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	95.76
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	95.76
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	95.7
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	95.6
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	95.52
PF14662	193	CCDC155: Coiled-coil region of CCDC155	95.48
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	95.43
PRK09039	343	hypothetical protein; Validated	95.23
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	95.22
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	95.05
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	95.03
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	94.91
PRK10929	1109	putative mechanosensitive channel protein; Provisi	94.9
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	94.85
PRK09039	343	hypothetical protein; Validated	94.8
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	94.71
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	94.61
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	94.53
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	94.52
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	94.5
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	94.28
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	94.18
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	94.18
PRK04778	569	septation ring formation regulator EzrA; Provision	94.1
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	94.07
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	93.91
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	93.89
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	93.83
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	93.8
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	93.65
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	93.59
PRK10929	1109	putative mechanosensitive channel protein; Provisi	93.54
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	93.51
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	93.46
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	93.42
PF14662	193	CCDC155: Coiled-coil region of CCDC155	93.41
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	93.39
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	93.06
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	93.06
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	92.79
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	92.78
KOG2991	330	consensus Splicing regulator [RNA processing and m	92.71
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	92.71
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	92.56
PF10212	518	TTKRSYEDQ: Predicted coiled-coil domain-containing	92.43
COG5185	622	HEC1 Protein involved in chromosome segregation, i	92.17
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	91.8
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	91.69
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	91.53
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	91.46
KOG4807	593	consensus F-actin binding protein, regulates actin	90.93
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	90.88
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	90.85
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	90.62
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.58
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	90.42
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	90.29
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	90.14
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	90.13
COG4372	499	Uncharacterized protein conserved in bacteria with	89.56
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	89.5
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	89.22
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	89.08
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	89.07
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	88.84
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	88.19
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	87.83
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	87.55
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	87.13
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	87.06
KOG0979	1072	consensus Structural maintenance of chromosome pro	87.02
PRK10884	206	SH3 domain-containing protein; Provisional	86.88
PF15450	531	DUF4631: Domain of unknown function (DUF4631)	86.58
COG2433	652	Uncharacterized conserved protein [Function unknow	86.3
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	86.16
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	85.83
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	85.83
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	85.81
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	85.62
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	85.6
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	84.98
KOG0018	1141	consensus Structural maintenance of chromosome pro	84.89
KOG0964	1200	consensus Structural maintenance of chromosome pro	84.85
COG2433	652	Uncharacterized conserved protein [Function unknow	84.7
PF10224	80	DUF2205: Predicted coiled-coil protein (DUF2205);	84.25
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	84.21
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	83.91
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	83.71
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	82.56
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	82.5
PF13514	1111	AAA_27: AAA domain	82.3
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	82.01
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	81.56
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	81.44
PF04065	233	Not3: Not1 N-terminal domain, CCR4-Not complex com	81.39
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	81.3
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	80.92
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	80.72
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	80.7
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	80.56

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=100.00  E-value=3.7e-109  Score=894.16  Aligned_cols=598  Identities=42%  Similarity=0.607  Sum_probs=549.3

Q ss_pred             CCChHHHHHhhhhcCChhHHHhhHhHHHHHHHHhhHhhHHHHHHHHHHhHHhhcCCcHHHHHhhHHHHHHhHHHHHHHhh
Q 006469           17 SSSPVSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTK   96 (644)
Q Consensus        17 ~~~~~~~a~~~W~~~dl~~lq~~LD~~~~ei~~~q~~s~~sRK~La~~Tk~Fkk~~~~ekl~~~~~LLK~yQ~EID~LTk   96 (644)
                      +++++.+++++|+.|||..||+.||++|++|+++|++|+++||.|++.||+|||++|++|+++++||||+||.|||+||+
T Consensus         1 ~sa~~~~~~~~Wk~~dle~LQreLd~~~~~l~~~Q~~S~~srk~L~e~trefkk~~pe~k~k~~~~llK~yQ~EiD~Ltk   80 (629)
T KOG0963|consen    1 SAANVGSVTQYWKRFDLERLQRELDAEATEIAQRQDESEISRKRLAEETREFKKNTPEDKLKMVNPLLKSYQSEIDNLTK   80 (629)
T ss_pred             CcchHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHhhhhhcCCCChHHHHHHHHHHHhhhhhhHhhHhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHH
Q 006469           97 RAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQ  176 (644)
Q Consensus        97 RsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~le~e~~~Lk~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~  176 (644)
                      |||+||.+||+||+.|+|||||+|+|..+..+..+++..+.|+.+|+.++.+++.+++++++|.++++.|+++++++++.
T Consensus        81 Rsk~aE~afl~vye~L~eaPDP~pll~sa~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~  160 (629)
T KOG0963|consen   81 RSKFAEAAFLDVYEKLIEAPDPVPLLASAAELLNKQQKASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQL  160 (629)
T ss_pred             HHHhhHHHHHHHHHHHhhCCCCchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHH
Confidence            99999999999999999999999999999999988888888999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHH
Q 006469          177 MEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLL  256 (644)
Q Consensus       177 ~e~~~~~~v~~ke~el~~~~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml  256 (644)
                      ++..+...+..++..+...|.+++.-+.+.+..+++++..++.++..|++.++.+|.++++++.+|+++.+++.+|+.+|
T Consensus       161 ~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~li  240 (629)
T KOG0963|consen  161 LEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLI  240 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          257 MDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMN  336 (644)
Q Consensus       257 ~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~  336 (644)
                      |.|||+|++|+..||+|++.|+.+++.++++......++.+   .+...|..+|.+|.+|..+++++++++..+++.+..
T Consensus       241 m~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~---~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~  317 (629)
T KOG0963|consen  241 MTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDID---ALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKA  317 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999987655433333   445558889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhcccCCcccc-hhhhhcchhhhchhHHHHHHHhhhhh
Q 006469          337 EIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAE-DWEVATNDEEMSKMESLLLDKNRKME  415 (644)
Q Consensus       337 ~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf~~~d~~-~~~~a~~~~~~~~LE~lLl~kNrkL~  415 (644)
                      +|+.|+.++..+...+.+++.+|+++   +||++||+||.|||+||||...++ +++     ....++|++|++|||+|+
T Consensus       318 qI~~le~~l~~~~~~leel~~kL~~~---sDYeeIK~ELsiLk~ief~~se~a~~~~-----~~~~~leslLl~knr~lq  389 (629)
T KOG0963|consen  318 QISALEKELKAKISELEELKEKLNSR---SDYEEIKKELSILKAIEFGDSEEANDED-----ETAKTLESLLLEKNRKLQ  389 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhh---ccHHHHHHHHHHHHHhhcCCcccccccc-----cccchHHHHHHHHHhhhh
Confidence            99999999999999999999999996   899999999999999999955433 221     345799999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCC
Q 006469          416 HELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKH  495 (644)
Q Consensus       416 ~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (644)
                      ++++.||+.+..+..++..+....+.+.++..+++.+|++||+||..++......|    ...++.++++..+.+.+..+
T Consensus       390 ~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~i~klE~dl~~~~~~~~~~~----~~~~~~~~~~~~v~e~s~~~  465 (629)
T KOG0963|consen  390 NENASLRVANSGLSGRITELSKKGEELEAKATEQKELIAKLEQDLLKVQVSPPAEG----ATARREEGSGQPVPESSIMG  465 (629)
T ss_pred             HHHHHHhccccccchhHHHHHhhhhhhHHHHHHHHHHHHHHHhhHhhcccCCCCCc----chhhhcccCCcCCCcccccC
Confidence            99999999999999999999999999999999999999999999999997544322    22333444444444333221


Q ss_pred             C----CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhhhccccccccccCC
Q 006469          496 T----YPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNEKVISRGS  571 (644)
Q Consensus       496 ~----~~~~~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkirylqsy~~~~~~~~~~  571 (644)
                      +    +..+..+.|+|||++||||||.||.+++.+++.....+..+..++.++++||++|||||||+|+|.+++      
T Consensus       466 ~~p~~~~~~~~s~~l~ii~~qRdrfr~~n~~~e~~~r~a~~~~~~l~~el~~~~a~n~~lyekir~~q~y~~~~------  539 (629)
T KOG0963|consen  466 GGPSLPNGGVLSRILSVISSQRDRFRARNVELEAQVRLANDKIGFLESELEKLKADNTKLYEKIRYLQSYDGKS------  539 (629)
T ss_pred             CCCCccccccccccchhhhcccchhhhhhhhHHHHHhhccCchhHHhhhhhhhhcccccccccccCccccccCC------
Confidence            1    223466779999999999999999999999999999999999999999999999999999999995532      


Q ss_pred             CCccccccCCCCchhhHHHHHHHHhhcChhHhhhHHHHHHhhhcCCchhhHHHhhhhhhhcchhhhHhHhhcC
Q 006469          572 KKYAEDLESGFTSDIESKYKKMYEDDINPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYNLLYLFLFS  644 (644)
Q Consensus       572 ~~~~~~~~~~~~~d~e~~Y~~~YE~~L~Pf~~F~~~E~~r~~~~l~~~er~~l~~~r~vL~nr~~R~~f~~Y~  644 (644)
                               +...|++.+|..+||++||||++|+++|+.|+|+.|++++|++++++|++|+||++|++|||||
T Consensus       540 ---------~~~~d~e~~y~~~yee~l~p~a~f~k~e~~~k~~~l~~~~~~~~s~~r~~l~nk~~r~~~~~y~  603 (629)
T KOG0963|consen  540 ---------GESSDVESQYSAAYEESISPFASFRKKERERKYKRLGSFERITLSLGRTLLFNKMTRTLFFFYT  603 (629)
T ss_pred             ---------CCCcchhhhhhhHHHhhcCHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     3456789999999999999999999999999999999999999999999999999999999998

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=100.00  E-value=3.3e-52  Score=422.11  Aligned_cols=212  Identities=39%  Similarity=0.601  Sum_probs=172.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccC-------CCCCCCcchh
Q 006469          432 LETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKK-------HTYPDQDQSS  504 (644)
Q Consensus       432 l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~s  504 (644)
                      |+.+++++..++++++++++||++||+||.+++..... ...+++.+.+.+|++..++....+       ++.+.+++++
T Consensus         1 l~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~s   79 (248)
T PF08172_consen    1 LEELQKELSELEAKLEEQKELNAKLENDLAKVQASSSA-SRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSS   79 (248)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-ccCCCCcccccccchhhccCccccCCCCCCccCCCCCCccc
Confidence            46789999999999999999999999999999976332 234566666666655433322111       1112368999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhhhcccccccccc----CCCCccc--cc
Q 006469          505 MLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNEKVISR----GSKKYAE--DL  578 (644)
Q Consensus       505 iL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkirylqsy~~~~~~~~----~~~~~~~--~~  578 (644)
                      ||||||+||||||+||.|||+|++++++++..|++|+++|++||+||||||||||||++++....    +..+++.  ..
T Consensus        80 iLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~~~~~~~~~~~~~~~~~~~~~~~  159 (248)
T PF08172_consen   80 ILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYNNKGSGSSSSAVSNSPGRSSVSP  159 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCcccccCCCCcccCCC
Confidence            99999999999999999999999999999999999999999999999999999999996421111    2222222  22


Q ss_pred             cCCCCchhhH-HHHHHHHhhcChhHhhhHHHHHHhhhcCCchhhHHHhhhhhhhcchhhhHhHhhcC
Q 006469          579 ESGFTSDIES-KYKKMYEDDINPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYNLLYLFLFS  644 (644)
Q Consensus       579 ~~~~~~d~e~-~Y~~~YE~~L~Pf~~F~~~E~~r~~~~l~~~er~~l~~~r~vL~nr~~R~~f~~Y~  644 (644)
                      .++...|++. +|+.+||+.||||++|+++|++|+|++|+|+||+||++||+||+||++||+|||||
T Consensus       160 ~~~~~~d~e~~rY~~~YE~~l~PF~~F~~~E~~R~~~~L~~~eR~~ls~~r~vL~nr~~R~~f~~Y~  226 (248)
T PF08172_consen  160 EPGGSSDVESNRYSSAYEESLNPFAAFRKRERQRRYKRLSPPERIFLSLTRFVLSNRTTRMLFFFYC  226 (248)
T ss_pred             CCCCCCchhHHHHHHHHHhccChHHHHhHhhHHHHHhcCChHHHHHHHHHHHHhcChhhHHHHHHHH
Confidence            2233456776 99999999999999999999999999999999999999999999999999999998

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=99.31  E-value=7.7e-09  Score=117.15  Aligned_cols=300  Identities=17%  Similarity=0.227  Sum_probs=191.1

Q ss_pred             hhhhhhhHHHHHHHhhhhhcCCCC---------hHHHHHHHHHHHhhhhhhHhhHhHHHHHHHHHHHHhHhhhhHHHHHH
Q 006469           95 TKRAKFGENAFLNIYQKLYEAPDP---------YPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRR  165 (644)
Q Consensus        95 TkRsK~aE~aFl~~Y~~L~eaPDP---------~PlLe~s~~~~~~~~~le~e~~~Lk~el~~l~~e~a~lk~q~~~~~~  165 (644)
                      .|+ -+++++|++...+- ++|-|         .|++..+.+...-. ....+-..|+.++.+|..++..++-+..+   
T Consensus       176 ~kp-~p~~t~~l~~lpPq-~tpaqtPl~sP~~~~P~~Tta~a~v~l~-saskte~eLr~QvrdLtEkLetlR~kR~E---  249 (1243)
T KOG0971|consen  176 QKP-VPAATGELSSLPPQ-ETPAQTPLASPIIPTPVLTTAGAVVPLP-SASKTEEELRAQVRDLTEKLETLRLKRAE---  249 (1243)
T ss_pred             CCC-ChhhhcccccCCCc-cCCCCCCccCCCCCCCCCCCccccCCCC-ccccchHHHHHHHHHHHHHHHHHHhhhhh---
Confidence            355 66778998877663 23433         33333322211100 11223334999999999999998866664   


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 006469          166 LEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE  245 (644)
Q Consensus       166 Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~  245 (644)
                      .+.++++|++-.     -.+ +.-.||+       ..+.+.+.+|+++|..+....++++.           |+.+|-.+
T Consensus       250 Dk~Kl~Elekmk-----iql-eqlqEfk-------Skim~qqa~Lqrel~raR~e~keaqe-----------~ke~~k~e  305 (1243)
T KOG0971|consen  250 DKAKLKELEKMK-----IQL-EQLQEFK-------SKIMEQQADLQRELKRARKEAKEAQE-----------AKERYKEE  305 (1243)
T ss_pred             hHHHHHHHHHHH-----HHH-HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH
Confidence            455666675532     111 2223333       44566777888888887777776654           45577777


Q ss_pred             HHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCC-CCCCchhhhHhhhhhhHHHHHHHHHHHHHHH
Q 006469          246 RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNS-DTLDSNSYLENSLSAKEKIISELNSELHNIE  324 (644)
Q Consensus       246 ~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~-~~~~~~s~le~el~~ke~~i~~L~~e~~~L~  324 (644)
                      .+..++-|||++-|-|.|..|+..|+.+++.|++.+....-+.++... +...+. .-   ......+..+|+..|.+|.
T Consensus       306 mad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~-~~---~~~ss~qfkqlEqqN~rLK  381 (1243)
T KOG0971|consen  306 MADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGS-DG---QAASSYQFKQLEQQNARLK  381 (1243)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CC---cccchHHHHHHHHHHHHHH
Confidence            778888899999999999999999999999888888777665442110 000000 00   1223556899999999999


Q ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhcccCCcccc-h-hhhhcchhh
Q 006469          325 TALSNEREQHMNEI---KKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAE-D-WEVATNDEE  399 (644)
Q Consensus       325 ~~l~~~r~~~~~~~---~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf~~~d~~-~-~~~a~~~~~  399 (644)
                      ..|.++|+..+...   .++...+..+..++.+|....+.         ++++++++.++    .++= + .+.|.++  
T Consensus       382 dalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~---------Lsr~~d~aEs~----iadlkEQVDAAlGA--  446 (1243)
T KOG0971|consen  382 DALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKER---------LSRELDQAEST----IADLKEQVDAALGA--  446 (1243)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---------HHHHHHHHHHH----HHHHHHHHHHhhcH--
Confidence            99999999877664   66666777777777777766544         45566665554    1110 0 1122222  


Q ss_pred             hchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          400 MSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAK  445 (644)
Q Consensus       400 ~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~e  445 (644)
                      ..++++ |.+||-.|+..+-.|+-.+.+|+. ++.+..++.+.+.+
T Consensus       447 E~MV~q-LtdknlnlEekVklLeetv~dlEa-lee~~EQL~Esn~e  490 (1243)
T KOG0971|consen  447 EEMVEQ-LTDKNLNLEEKVKLLEETVGDLEA-LEEMNEQLQESNRE  490 (1243)
T ss_pred             HHHHHH-HHhhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            257788 999999999999999988888764 34444555444433

>PRK02224 chromosome segregation protein; Provisional

Probab=99.01  E-value=0.00012  Score=88.73  Aligned_cols=104  Identities=13%  Similarity=0.165  Sum_probs=62.7

Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccc
Q 006469          409 DKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELS  488 (644)
Q Consensus       409 ~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (644)
                      .+...+..++..++..........+.+......+..++.++...+..++.++..+... .                    
T Consensus       537 ~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~-~--------------------  595 (880)
T PRK02224        537 ERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERI-R--------------------  595 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------------------
Confidence            3444566666666666665555555555555555556666666666666666555421 1                    


Q ss_pred             cccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006469          489 EKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTK  545 (644)
Q Consensus       489 ~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk  545 (644)
                                  ....-+.-+....++++.+..+|+.........+..++.+++.+.
T Consensus       596 ------------~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~  640 (880)
T PRK02224        596 ------------TLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELE  640 (880)
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        233345556666666667776666666666777777777777664

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.00  E-value=2.4e-05  Score=97.01  Aligned_cols=23  Identities=9%  Similarity=0.049  Sum_probs=18.5

Q ss_pred             CCCchhhHHHHHHHHhhcChhHh
Q 006469          581 GFTSDIESKYKKMYEDDINPFAA  603 (644)
Q Consensus       581 ~~~~d~e~~Y~~~YE~~L~Pf~~  603 (644)
                      ++.+.++..|..+.+..|++...
T Consensus       528 ~dli~v~~~y~~Aie~~lg~~l~  550 (1164)
T TIGR02169       528 AQLGSVGERYATAIEVAAGNRLN  550 (1164)
T ss_pred             HHhcCcCHHHHHHHHHHhhhhhC
Confidence            55667778999999999998653

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR00606 rad50 rad50

Probab=98.90  E-value=0.00018  Score=90.61  Aligned_cols=43  Identities=12%  Similarity=0.220  Sum_probs=33.5

Q ss_pred             hHHHHHhhhhcCChhHHHhhHhHHHHHHHHhhHhhHHHHHHHHHH
Q 006469           20 PVSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAES   64 (644)
Q Consensus        20 ~~~~a~~~W~~~dl~~lq~~LD~~~~ei~~~q~~s~~sRK~La~~   64 (644)
                      .|...+..| ..+ +.++..++....+|...+++.....+.+.+.
T Consensus       561 ~~~~~~~~~-~~~-~~l~~~~~~~~~el~~~~~~~~~~~~el~~~  603 (1311)
T TIGR00606       561 ELTSLLGYF-PNK-KQLEDWLHSKSKEINQTRDRLAKLNKELASL  603 (1311)
T ss_pred             HHHHhcCCC-CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355555577 666 8899999999999999998888888877553

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK02224 chromosome segregation protein; Provisional

Probab=98.89  E-value=0.0007  Score=82.03  Aligned_cols=205  Identities=15%  Similarity=0.226  Sum_probs=92.8

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCC----CCch------hhhHhhhhhhHHHHHHHHHHH
Q 006469          251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDT----LDSN------SYLENSLSAKEKIISELNSEL  320 (644)
Q Consensus       251 aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~----~~~~------s~le~el~~ke~~i~~L~~e~  320 (644)
                      +.++-+..+++.++.++..++.....++..|..+.........+-    ++..      ..+...+......+..|..++
T Consensus       412 ~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Cp~C~r~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l  491 (880)
T PRK02224        412 DFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEV  491 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            445556666666666666666666666666666653111111111    1111      122222333333444555555


Q ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhcccCCcccchhhh-h---
Q 006469          321 HNIETALSNEREQH--MNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEV-A---  394 (644)
Q Consensus       321 ~~L~~~l~~~r~~~--~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf~~~d~~~~~~-a---  394 (644)
                      ..+...+.......  ..++..+...+......+......++..  ...|++++.++.-|+.- .     .++.. +   
T Consensus       492 ~~~~~~~e~l~~~~~~~~~l~~l~~~~~~l~~~~~~~~e~le~~--~~~~~~l~~e~~~l~~~-~-----~~~~~~~~~~  563 (880)
T PRK02224        492 EEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEK--RERAEELRERAAELEAE-A-----EEKREAAAEA  563 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHH-H-----HHHHHHHHHH
Confidence            44444443332221  1222333333333333333333333332  35677777777776421 0     01000 0   


Q ss_pred             --cchhhhchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006469          395 --TNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS  465 (644)
Q Consensus       395 --~~~~~~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~  465 (644)
                        ........+.. +..+...+.+++..+. ...++..++..+...+..+..++..++.....+...|..+..
T Consensus       564 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~le-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~  634 (880)
T PRK02224        564 EEEAEEAREEVAE-LNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRE  634 (880)
T ss_pred             HhhhHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              00000011222 3444445555566665 456666666666666666666666665555555555555543

>PRK03918 chromosome segregation protein; Provisional

Probab=98.86  E-value=0.00091  Score=80.97  Aligned_cols=29  Identities=17%  Similarity=0.266  Sum_probs=15.1

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          250 QSEVNLLMDEVERAQTRLLSLQREKDLLR  278 (644)
Q Consensus       250 ~aEleml~~dLEra~~R~~~lE~ene~Lr  278 (644)
                      ..+++-+...+...+..+..++.+...++
T Consensus       458 ~~ei~~l~~~~~~l~~~~~~l~~~~~~~~  486 (880)
T PRK03918        458 TAELKRIEKELKEIEEKERKLRKELRELE  486 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555554443

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.85  E-value=3.7e-05  Score=81.74  Aligned_cols=287  Identities=18%  Similarity=0.258  Sum_probs=183.6

Q ss_pred             HHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          143 KIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVA  222 (644)
Q Consensus       143 k~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~~~~~erE~~L~~ql~~ae~~l~  222 (644)
                      |.++..||..|+..   ...++.|+.....|+.+....-...        ......-...|..--..|..+|..+-....
T Consensus         3 K~eL~~LNdRla~Y---IekVr~LE~~N~~Le~~i~~~~~~~--------~~~~~~~~~~ye~el~~lr~~id~~~~eka   71 (312)
T PF00038_consen    3 KEELQSLNDRLASY---IEKVRFLEQENKRLESEIEELREKK--------GEEVSRIKEMYEEELRELRRQIDDLSKEKA   71 (312)
T ss_dssp             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHhhhhHHHHHHHHhcc--------cccCcccccchhhHHHHhHHhhhhHHHHhh
Confidence            45677888888872   3367777777777766553222211        111111122344444566777887777788


Q ss_pred             HHHHHHHHHHHHHHHhhhcchHH---HHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC-------C--
Q 006469          223 TMQKLHELAQSQLFEVRAQSDEE---RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAG-------S--  290 (644)
Q Consensus       223 ~L~~~~e~~Q~~L~~~~~k~~~~---~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~-------~--  290 (644)
                      .+....+..+.++.+++.+++..   ......++..+..+++.+......++.++..|..+|...+..-.       .  
T Consensus        72 ~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~  151 (312)
T PF00038_consen   72 RLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQI  151 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT-
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence            88888888888888888888877   34556899999999999999999999999999999988765311       0  


Q ss_pred             --CCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh
Q 006469          291 --RNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALS-NEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKM  367 (644)
Q Consensus       291 --~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~-~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sD  367 (644)
                        ...++++..  -..+|..   .+.++..++........ .....+...+..+..........+..++.++...  ...
T Consensus       152 ~~~~~~e~~~~--~~~dL~~---~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~--r~~  224 (312)
T PF00038_consen  152 QSSVTVEVDQF--RSSDLSA---ALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKEL--RRQ  224 (312)
T ss_dssp             -----------------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
T ss_pred             ccccceeeccc--ccccchh---hhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHH--Hhh
Confidence              111122211  1112322   25556656554443333 2223345555556555555545555555544433  244


Q ss_pred             HHHHHHHHHHHHhcccCCcccchhhhhcchhhhchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          368 VDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKIN  447 (644)
Q Consensus       368 YeeiKrEL~iLk~IEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~  447 (644)
                      +..+..+|.-|+..                  ...|+.-|.+-...+..++..+...+..++.++..+..++.....+++
T Consensus       225 ~~~l~~el~~l~~~------------------~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~  286 (312)
T PF00038_consen  225 IQSLQAELESLRAK------------------NASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQ  286 (312)
T ss_dssp             HHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHhhhhhhccccc------------------hhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Confidence            55555555555532                  346777788888888888888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcc
Q 006469          448 EQQKLIQKLEDDILKGYS  465 (644)
Q Consensus       448 ~~~~li~kLE~DL~~~~~  465 (644)
                      ++-...-.|+..|.+...
T Consensus       287 ~Ll~~K~~Ld~EIatYR~  304 (312)
T PF00038_consen  287 ELLDVKLALDAEIATYRK  304 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHH
Confidence            988888888888887654

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.76  E-value=0.0014  Score=77.22  Aligned_cols=112  Identities=22%  Similarity=0.321  Sum_probs=61.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006469          252 EVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNER  331 (644)
Q Consensus       252 Eleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r  331 (644)
                      -++.+..+|.+..+.+..+..+.+.+-.+....+.+..           .+...+.+++.....|.+++.+|...|....
T Consensus       288 k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~-----------~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~  356 (775)
T PF10174_consen  288 KMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIE-----------VLKESLRAKEQEAEMLQSDVEALRFRLEEKN  356 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            35566666666665566666655555555444433331           3445566777777778888877777775433


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Q 006469          332 EQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQA  380 (644)
Q Consensus       332 ~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~  380 (644)
                          ..+.+.+.++.....+...+..++..+  ..-|+--.+++.+|+.
T Consensus       357 ----~~l~kk~~~~~~~qeE~~~~~~Ei~~l--~d~~d~~e~ki~~Lq~  399 (775)
T PF10174_consen  357 ----SQLEKKQAQIEKLQEEKSRLQGEIEDL--RDMLDKKERKINVLQK  399 (775)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence                233334444444444445555555444  2334444445555553

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>TIGR00606 rad50 rad50

Probab=98.75  E-value=0.0027  Score=80.13  Aligned_cols=42  Identities=10%  Similarity=0.051  Sum_probs=28.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELE  542 (644)
Q Consensus       501 ~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~  542 (644)
                      ........++.+++.+...+..+..+++....+|..++.+++
T Consensus      1051 ~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~ 1092 (1311)
T TIGR00606      1051 QMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELR 1092 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            344455666666777777777777777777777777777664

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.70  E-value=0.0021  Score=81.49  Aligned_cols=109  Identities=23%  Similarity=0.333  Sum_probs=73.6

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcccccccc
Q 006469          406 LLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGT  485 (644)
Q Consensus       406 lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~  485 (644)
                      .|-.+-++...-|+..+....++..+++..+.+...+..++..+...+..+=..+..+.....                 
T Consensus      1432 ~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk----------------- 1494 (1930)
T KOG0161|consen 1432 ALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENK----------------- 1494 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence            355666777777777777777777777777777777777766666666666555555543321                 


Q ss_pred             ccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469          486 ELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA  546 (644)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~  546 (644)
                                     ...+.+.-++.|-+.+-.++.||+..++....++..|+..+..+..
T Consensus      1495 ---------------~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~ 1540 (1930)
T KOG0161|consen 1495 ---------------NLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEA 1540 (1930)
T ss_pred             ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           4555566667777777777777777777777777777776666655

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.69  E-value=0.0005  Score=77.10  Aligned_cols=181  Identities=23%  Similarity=0.273  Sum_probs=119.0

Q ss_pred             HhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHH
Q 006469          247 VAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETA  326 (644)
Q Consensus       247 ~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~  326 (644)
                      .....|++.+..+|-.++.++...++.++-|+.+|..+.+.-.           .+.++|.....+..+|...+......
T Consensus       279 ~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RD-----------rt~aeLh~aRLe~aql~~qLad~~l~  347 (546)
T PF07888_consen  279 QQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRD-----------RTMAELHQARLEAAQLKLQLADASLE  347 (546)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            3456788888999999999999999999999999987766542           34455665555566666555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhcccCCcccchhhhhcchhhhchhHHH
Q 006469          327 LSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESL  406 (644)
Q Consensus       327 l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf~~~d~~~~~~a~~~~~~~~LE~l  406 (644)
                      +...+..++.+...|..........+..|..+++...  .-|.+=+.|=.                         .|+.=
T Consensus       348 lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e--~~lqEer~E~q-------------------------kL~~q  400 (546)
T PF07888_consen  348 LKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQMLE--EHLQEERMERQ-------------------------KLEKQ  400 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHH-------------------------HHHHH
Confidence            5555555555555454333333333444444433321  12222222222                         23332


Q ss_pred             HHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 006469          407 LLDKNRKME-HELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSS  466 (644)
Q Consensus       407 Ll~kNrkL~-~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~  466 (644)
                      | .+-+... -.|...+..+.+++..+.-++.+...+..+.+++..-|.+||..|..+-+.
T Consensus       401 l-~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~  460 (546)
T PF07888_consen  401 L-GKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVADE  460 (546)
T ss_pred             H-HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            3 1222222 378888889999999999999999999999999999999999999998654

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.67  E-value=0.0039  Score=79.18  Aligned_cols=47  Identities=26%  Similarity=0.416  Sum_probs=24.5

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          412 RKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLED  458 (644)
Q Consensus       412 rkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~  458 (644)
                      +.++..|..++...+++......+..+...+..++.++...+...|.
T Consensus      1241 k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~ 1287 (1930)
T KOG0161|consen 1241 KKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEA 1287 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHH
Confidence            55556666666666655555554444444444444444444444443

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=98.66  E-value=9.8e-05  Score=82.57  Aligned_cols=298  Identities=18%  Similarity=0.220  Sum_probs=208.9

Q ss_pred             HHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          144 IELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVAT  223 (644)
Q Consensus       144 ~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~~~~~erE~~L~~ql~~ae~~l~~  223 (644)
                      .++.++..++.++.+-+..++.++..++.++....+.-...-...++.....+.+..++|.++++.|.+.......++..
T Consensus       121 ~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~  200 (629)
T KOG0963|consen  121 EENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEE  200 (629)
T ss_pred             hhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46778999999999999999999999999999988877777777777777888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhH
Q 006469          224 MQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLE  303 (644)
Q Consensus       224 L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le  303 (644)
                      +......+|..+.+.......-......|+.....++.-+-..++.+..++..|..+.+.........++.......   
T Consensus       201 le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~---  277 (629)
T KOG0963|consen  201 LEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKI---  277 (629)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccC---
Confidence            99999999999988877655555556788999999999999999999999999999999988876544322111111   


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhccc
Q 006469          304 NSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGY  383 (644)
Q Consensus       304 ~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf  383 (644)
                      -.+.+......++.++|..|...+...+.++...+.....++       ..|+.++...  .+..+++++.|.--     
T Consensus       278 ~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI-------~~le~~l~~~--~~~leel~~kL~~~-----  343 (629)
T KOG0963|consen  278 DDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQI-------SALEKELKAK--ISELEELKEKLNSR-----  343 (629)
T ss_pred             CchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH--HHHHHHHHHHHhhh-----
Confidence            335666777888999999999999988888877776555444       4455555443  25667777776533     


Q ss_pred             CCcccchh--h--------hhcchhhhchhHHHHHHHhhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          384 NSIEAEDW--E--------VATNDEEMSKMESLLLDKNRKMEHE----LTQLKVKLSEKTSLLETAEGKIAELTAKINEQ  449 (644)
Q Consensus       384 ~~~d~~~~--~--------~a~~~~~~~~LE~lLl~kNrkL~~e----Lt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~  449 (644)
                      +  |=++.  +        -+++ . ...-+.   +--+.+++-    ...|..++..|......+...+..+....+++
T Consensus       344 s--DYeeIK~ELsiLk~ief~~s-e-~a~~~~---~~~~~leslLl~knr~lq~e~a~Lr~~n~~~~~~~~~~~~~~~el  416 (629)
T KOG0963|consen  344 S--DYEEIKKELSILKAIEFGDS-E-EANDED---ETAKTLESLLLEKNRKLQNENASLRVANSGLSGRITELSKKGEEL  416 (629)
T ss_pred             c--cHHHHHHHHHHHHHhhcCCc-c-cccccc---cccchHHHHHHHHHhhhhHHHHHHhccccccchhHHHHHhhhhhh
Confidence            2  11111  0        0111 1 011111   222334433    33444555555555555555555565556666


Q ss_pred             HHHHHHHHHHHHhhcc
Q 006469          450 QKLIQKLEDDILKGYS  465 (644)
Q Consensus       450 ~~li~kLE~DL~~~~~  465 (644)
                      ...+.....=+.....
T Consensus       417 ~~~~~~~ke~i~klE~  432 (629)
T KOG0963|consen  417 EAKATEQKELIAKLEQ  432 (629)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            5555555554444443

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.64  E-value=0.00069  Score=84.12  Aligned_cols=16  Identities=31%  Similarity=0.318  Sum_probs=10.3

Q ss_pred             CCCCCCCChHHHHHhh
Q 006469           12 KPNTSSSSPVSVISNF   27 (644)
Q Consensus        12 ~~~~~~~~~~~~a~~~   27 (644)
                      .++|++-|++-.|+.|
T Consensus        30 G~NGsGKS~ildAi~~   45 (1164)
T TIGR02169        30 GPNGSGKSNIGDAILF   45 (1164)
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            4455666777777764

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.58  E-value=0.0042  Score=73.18  Aligned_cols=32  Identities=44%  Similarity=0.572  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          512 QRDRFRARLRETEEEVRQLKEKIGVLTAELEK  543 (644)
Q Consensus       512 QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~  543 (644)
                      -.||+...+.+++.+......+|..|..++..
T Consensus       570 EVERLl~~L~~~E~EK~~ke~ki~~LekeLek  601 (775)
T PF10174_consen  570 EVERLLDILREAENEKNDKEKKIGELEKELEK  601 (775)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            34555555555555555555555555555433

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.57  E-value=0.0078  Score=75.44  Aligned_cols=401  Identities=20%  Similarity=0.260  Sum_probs=207.3

Q ss_pred             hHHHHHHH----hhhhhhhHHHHHHHhhhhhcCCCChHHHHHHHHHHHhhhhhhHhhHhHHHHHHHHHHHHhHhhhhHH-
Q 006469           87 YQEEVDNL----TKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQS-  161 (644)
Q Consensus        87 yQ~EID~L----TkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~le~e~~~Lk~el~~l~~e~a~lk~q~~-  161 (644)
                      |..+|++|    .+=.-.+|.....+|+++.             .+..+.+.+..+...++.++.++..+|..+.+... 
T Consensus        32 k~~~~~~lk~e~~k~~v~~eq~~~~~ekK~~-------------~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~   98 (1822)
T KOG4674|consen   32 KSKDFESLKDEDGKTEVNHEQQLSELEKKIL-------------RLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSN   98 (1822)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            44445443    3333345555555666644             12234446677788888888888888886665544 


Q ss_pred             ---HHHHHHHHHHHHHHHHHHhHH-HHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          162 ---TIRRLEERNRQLEQQMEEKVK-EIVEIKQRGLAE-ENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLF  236 (644)
Q Consensus       162 ---~~~~Lke~~~~le~~~e~~~~-~~v~~ke~el~~-~~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~  236 (644)
                         ++.+++..+-.+.+.+.+... .+......++.. .++.    ...--..|..++..+-..+-++.+...-.+...-
T Consensus        99 l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~----l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~v  174 (1822)
T KOG4674|consen   99 LSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEA----LESENKDLNDQLKSSTKTLSELEARLQETQSEDV  174 (1822)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               555566555555555544442 111122222221 1111    1122234556666666666666666555555444


Q ss_pred             Hhhhcc---hHHHHhhHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhh
Q 006469          237 EVRAQS---DEERVAKQSEVNLLMDEVERAQTRLLSLQRE----KDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAK  309 (644)
Q Consensus       237 ~~~~k~---~~~~~a~~aEleml~~dLEra~~R~~~lE~e----ne~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~k  309 (644)
                      ..+.++   .++......+.-.|..||-..+..+..++++    +..|++.|........           .+.......
T Consensus       175 s~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~-----------~~q~~~~~l  243 (1822)
T KOG4674|consen  175 SSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLA-----------ELQEKNKSL  243 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Confidence            433332   2344556667777778888888888888888    8888888877665532           111112222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHhcCCChhhH
Q 006469          310 EKIISELNSELHNIETALSNEREQHMNEIKKLNALL---------------------IEKEAALEDMKKELQARPTSKMV  368 (644)
Q Consensus       310 e~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l---------------------~~~~~~~~~L~~~l~~~~~~sDY  368 (644)
                      ..+..+|..-+..+...+...+.+......++...+                     .+....+.+++..+...  ...|
T Consensus       244 ~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~--~~~~  321 (1822)
T KOG4674|consen  244 KQQNEELSKKIESLNLELSKLKDTAESSEEKFEKELSTQKKLNELWKSKLEELSHEVAELQRAIEELEKLLEDA--SERN  321 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhh
Confidence            222333333333333333333333222222222222                     22222222222222221  0111


Q ss_pred             ------------------HHHHHHHHHHH-hcccCCcccchhhhhcchhhhchhH--HHHHHHhhhhhHHHHHHHHHHHH
Q 006469          369 ------------------DDLRKKVKILQ-AVGYNSIEAEDWEVATNDEEMSKME--SLLLDKNRKMEHELTQLKVKLSE  427 (644)
Q Consensus       369 ------------------eeiKrEL~iLk-~IEf~~~d~~~~~~a~~~~~~~~LE--~lLl~kNrkL~~eLt~lR~~~~~  427 (644)
                                        +.+..++.-|. .|+-    +-+...++  ...+++.  ..+..++.+....|+.++.....
T Consensus       322 ~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~----an~~~~~~--~~~~~~s~~~a~~s~~~~~~~sLtk~ys~~~~  395 (1822)
T KOG4674|consen  322 KENTDQLKELEQSLSKLNEKLEKKVSRLEGELED----ANDSLSAT--GESSMVSEKAALASSLIRPGSSLTKLYSKYSK  395 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHhh--cccchhhhHHHHHHhhcccchhHHHHHHHHHH
Confidence                              11122222222 1111    11100110  1122333  45678899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcchhHHH
Q 006469          428 KTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLK  507 (644)
Q Consensus       428 l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~  507 (644)
                      ++..+..+.-++.++...+..+...+..+..-|........                                ..+.-.-
T Consensus       396 ~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e--------------------------------~~~~~~~  443 (1822)
T KOG4674|consen  396 LQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELE--------------------------------RMQETKA  443 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH--------------------------------HHHHHHH
Confidence            99999999998888888888888888777776666554432                                1222233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHH
Q 006469          508 VICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKI  555 (644)
Q Consensus       508 Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEki  555 (644)
                      -+..++|-..+.+..++..+..+......+.+++..+..++-.|-.-|
T Consensus       444 ~l~~el~~~~q~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv  491 (1822)
T KOG4674|consen  444 ELSEELDFSNQKIQKLEKELESLKKQLNDLERENKLLEQQISDLSRQV  491 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555555555555555555555554444444

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.56  E-value=0.002  Score=79.91  Aligned_cols=20  Identities=10%  Similarity=0.044  Sum_probs=14.5

Q ss_pred             HhhhcCCchhhHHHhhhhhh
Q 006469          611 QRYKELGIRDRITLSSGRFL  630 (644)
Q Consensus       611 r~~~~l~~~er~~l~~~r~v  630 (644)
                      .....||..++..+.+++++
T Consensus      1085 ~~~~~lS~g~~~~~~l~~~~ 1104 (1179)
T TIGR02168      1085 QNLSLLSGGEKALTALALLF 1104 (1179)
T ss_pred             ccccccCccHHHHHHHHHHH
Confidence            34566888888888887765

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.50  E-value=0.0041  Score=77.15  Aligned_cols=15  Identities=13%  Similarity=0.419  Sum_probs=8.4

Q ss_pred             hhhHHHHHHHHhhcC
Q 006469          585 DIESKYKKMYEDDIN  599 (644)
Q Consensus       585 d~e~~Y~~~YE~~L~  599 (644)
                      .+...|..+.+..++
T Consensus       530 ~~~~~~~~a~~~~~g  544 (1179)
T TIGR02168       530 SVDEGYEAAIEAALG  544 (1179)
T ss_pred             eeChhHHHHHHHHHH
Confidence            344567776665443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.47  E-value=0.0048  Score=76.98  Aligned_cols=95  Identities=18%  Similarity=0.234  Sum_probs=49.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhhhccccc----ccccc---CCCC
Q 006469          501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNE----KVISR---GSKK  573 (644)
Q Consensus       501 ~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkirylqsy~~~----~~~~~---~~~~  573 (644)
                      .....+..+..+....+.+..+++.++......+..+..++..++.       ++.-++.....    .....   ...+
T Consensus       443 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~  515 (1163)
T COG1196         443 ELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEA-------RLDRLEAEQRASQGVRAVLEALESGLP  515 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhhhHHHHHHHHhccCC
Confidence            3444555566666666666666666666666666666666555554       22222211110    00000   0011


Q ss_pred             ccccccCCCCchhhHHHHHHHHhhcChhHh
Q 006469          574 YAEDLESGFTSDIESKYKKMYEDDINPFAA  603 (644)
Q Consensus       574 ~~~~~~~~~~~d~e~~Y~~~YE~~L~Pf~~  603 (644)
                      |.. .+.++.+.+..+|..+.+..|+.=.+
T Consensus       516 Gv~-G~v~~li~v~~~y~~Aie~alG~~l~  544 (1163)
T COG1196         516 GVY-GPVAELIKVKEKYETALEAALGNRLQ  544 (1163)
T ss_pred             Ccc-chHHHhcCcChHHHHHHHHHcccccC
Confidence            110 11145566777999999999985433

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.41  E-value=0.018  Score=72.28  Aligned_cols=96  Identities=22%  Similarity=0.281  Sum_probs=60.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchH----------------------HHHhh
Q 006469          192 LAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDE----------------------ERVAK  249 (644)
Q Consensus       192 l~~~~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~----------------------~~~a~  249 (644)
                      ..+.+.+-.+.|.+++..|..++......+..|...+.....++.++..+...                      +....
T Consensus      1086 ~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Ekei~ 1165 (1822)
T KOG4674|consen 1086 RHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEKEIA 1165 (1822)
T ss_pred             HHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHhHHHHH
Confidence            34566677788999999999888888888888888777777666655443210                      01112


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006469          250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE  287 (644)
Q Consensus       250 ~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~  287 (644)
                      ..+++++..|.-+-++++..+++.++.|+.-|......
T Consensus      1166 ~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~ 1203 (1822)
T KOG4674|consen 1166 ETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERAS 1203 (1822)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455555555556666666666666666666554433

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.35  E-value=0.0015  Score=69.39  Aligned_cols=108  Identities=18%  Similarity=0.257  Sum_probs=79.5

Q ss_pred             hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcccc
Q 006469          402 KMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSE  481 (644)
Q Consensus       402 ~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~  481 (644)
                      .++.....+-..+................++..+...+..+..++..++..+..||..|..++..               
T Consensus       188 e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~---------------  252 (312)
T PF00038_consen  188 ELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQR---------------  252 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred             hhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHH---------------
Confidence            34555555555566666666666666777777777777777777777777788888777766532               


Q ss_pred             ccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhh
Q 006469          482 AGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQL  551 (644)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kL  551 (644)
                                                 +..+++.|...+..|+.++......+.....++..|-...+.|
T Consensus       253 ---------------------------~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~L  295 (312)
T PF00038_consen  253 ---------------------------LDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLAL  295 (312)
T ss_dssp             ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------HHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence                                       3577888899999999999999999988888888887765555

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.31  E-value=0.03  Score=70.25  Aligned_cols=37  Identities=27%  Similarity=0.326  Sum_probs=20.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 006469          252 EVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA  288 (644)
Q Consensus       252 Eleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~  288 (644)
                      +..-+...-+.+...+..++++...++.+++.+..-.
T Consensus       498 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L  534 (1201)
T PF12128_consen  498 EEQELRKERDQAEEELRQARRELEELRAQIAELQRQL  534 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3334444445555566666666666666666665443

>PRK03918 chromosome segregation protein; Provisional

Probab=98.29  E-value=0.025  Score=68.54  Aligned_cols=17  Identities=24%  Similarity=0.208  Sum_probs=10.5

Q ss_pred             HhhhcCCchhhHHHhhh
Q 006469          611 QRYKELGIRDRITLSSG  627 (644)
Q Consensus       611 r~~~~l~~~er~~l~~~  627 (644)
                      +.+..||..++..++++
T Consensus       784 ~~~~~lS~G~~~~~~la  800 (880)
T PRK03918        784 RPLTFLSGGERIALGLA  800 (880)
T ss_pred             CChhhCCHhHHHHHHHH
Confidence            34556777777765555

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.27  E-value=0.0044  Score=69.75  Aligned_cols=141  Identities=21%  Similarity=0.291  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHhHhhhhHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHH-------HHHHHHHHHHHH
Q 006469          143 KIELEEYRTEATHLKNQQS-TIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEI-------LQEREQALQDQL  214 (644)
Q Consensus       143 k~el~~l~~e~a~lk~q~~-~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~~~-------~~erE~~L~~ql  214 (644)
                      |.+|.+||+.|+.    |. .++.|+.+.+.|+......-. .+.--...++..|+..+..       -...-..++..+
T Consensus        41 K~El~~LNDRLA~----YIekVR~LEaqN~~L~~di~~lr~-~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei  115 (546)
T KOG0977|consen   41 KKELQELNDRLAV----YIEKVRFLEAQNRKLEHDINLLRG-VVGRETSGIKAKYEAELATARKLLDETARERAKLEIEI  115 (546)
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHh-hccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            5577788888887    44 788888888877776532211 1100001122222222211       112223456667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcchHH---HHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 006469          215 RQAKDSVATMQKLHELAQSQLFEVRAQSDEE---RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA  288 (644)
Q Consensus       215 ~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~---~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~  288 (644)
                      ..++..+++++..++.++......+.+....   .....+|+.++..+.....-.+..|-++|..|+.+|..++...
T Consensus       116 ~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l  192 (546)
T KOG0977|consen  116 TKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL  192 (546)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            7777777777777777766665555444322   3445677777777777777777777777777777777766554

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.26  E-value=0.0011  Score=67.96  Aligned_cols=148  Identities=17%  Similarity=0.289  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469          204 QEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQS  283 (644)
Q Consensus       204 ~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~  283 (644)
                      ..+......++..++.+++++....+.+.       .+|++.    .--+.++..+|+++..|+..+|.++..|..+|..
T Consensus        84 E~r~~~~eeri~~lE~~l~ea~~~~ee~e-------~k~~E~----~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~  152 (237)
T PF00261_consen   84 ENREQSDEERIEELEQQLKEAKRRAEEAE-------RKYEEV----ERKLKVLEQELERAEERAEAAESKIKELEEELKS  152 (237)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHH-------HHHHHC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH----HHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH
Confidence            33444444555555555555555544333       333321    2336788999999999999999999999999998


Q ss_pred             hhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 006469          284 ANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARP  363 (644)
Q Consensus       284 a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~  363 (644)
                      +.....           +++..-.........+...+..|...|...-.    .....+..+..+...+..|+..|... 
T Consensus       153 ~~~~lk-----------~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~----Rae~aE~~v~~Le~~id~le~eL~~~-  216 (237)
T PF00261_consen  153 VGNNLK-----------SLEASEEKASEREDEYEEKIRDLEEKLKEAEN----RAEFAERRVKKLEKEIDRLEDELEKE-  216 (237)
T ss_dssp             HHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHH-----------HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            876652           22222222222234455555555555543322    12223333344444555566666543 


Q ss_pred             ChhhHHHHHHHH-HHHH
Q 006469          364 TSKMVDDLRKKV-KILQ  379 (644)
Q Consensus       364 ~~sDYeeiKrEL-~iLk  379 (644)
                       ...|..|+.+| .+|.
T Consensus       217 -k~~~~~~~~eld~~l~  232 (237)
T PF00261_consen  217 -KEKYKKVQEELDQTLN  232 (237)
T ss_dssp             -HHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHH
Confidence             36789999998 5555

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.21  E-value=0.048  Score=68.41  Aligned_cols=378  Identities=16%  Similarity=0.210  Sum_probs=166.3

Q ss_pred             HhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          140 RKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKD  219 (644)
Q Consensus       140 ~~Lk~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~~~~~erE~~L~~ql~~ae~  219 (644)
                      .+++.++..+...+..+..-...+..|...+...+...+..+ ..+..+-..+...+..-.+.|.+....+...+..+..
T Consensus       242 ~~~r~~~~~l~~~~~~l~~~~~~L~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~  320 (1201)
T PF12128_consen  242 EKVRPEFDKLQQQYRQLQALEQQLCHLHAELNADEQQLEQEQ-PELKEELNELNEELEKLEDEIKELRDELNKELSALNA  320 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444433333333333333333333333322 3333444555556666666777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCch
Q 006469          220 SVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSN  299 (644)
Q Consensus       220 ~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~  299 (644)
                      .+..+...++..+.+-.......=+......+.+.-+..+++..+.++..|......+..+..........         
T Consensus       321 ~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~---------  391 (1201)
T PF12128_consen  321 DLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEE---------  391 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence            77777777776665555443322222333344444555555555555544444444444444332222100         


Q ss_pred             hhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 006469          300 SYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIE-KEAALEDMKKELQARPTSKMVDDLRKKVKIL  378 (644)
Q Consensus       300 s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~-~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iL  378 (644)
                       ..       ...+..+..+...+.......+.........+...+.. .......+..         +-..++.++..|
T Consensus       392 -~~-------~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~l  454 (1201)
T PF12128_consen  392 -AF-------NRQQERLQAQQDEIREEKAERREQIEEEYQALEQELRQQSQEQLEELQE---------QREQLKSELAEL  454 (1201)
T ss_pred             -HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHH
Confidence             11       11222222222222222222223333233333222221 1111112221         223334444444


Q ss_pred             HhcccCCcccchhhhhcchhhhchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          379 QAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLED  458 (644)
Q Consensus       379 k~IEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~  458 (644)
                      +..--...-.++.-.. .......++. .-.........+..++..+..+....+.....+..+..++.+++.-+..|..
T Consensus       455 ~~~~~~~~~~~e~~~~-~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~  532 (1201)
T PF12128_consen  455 KQQLKNPQYTEEEKEQ-LEQADKRLEQ-AQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQR  532 (1201)
T ss_pred             HHHHhCcCCCHHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4321111111110000 0000112222 2333444555566666666666666666666666666666666666666666


Q ss_pred             HHHhhcccCCCC-CCCCCCCcccccccc--------cccc----cc----ccC------CC-CCC-----CcchhHHHHH
Q 006469          459 DILKGYSSKDRK-GNVFDDWDLSEAGGT--------ELSE----KA----DKK------HT-YPD-----QDQSSMLKVI  509 (644)
Q Consensus       459 DL~~~~~~~~~~-~~~~~~~~~~~~~~~--------~~~~----~~----~~~------~~-~~~-----~~~~siL~Iv  509 (644)
                      -|.-..++.-.. ....+||--...-+-        ++.|    ++    ..|      .. .|+     .....-+..+
T Consensus       533 ~L~p~~gSL~~fL~~~~p~We~tIGKVid~eLL~r~dL~P~l~~~~~~dslyGl~LdL~~I~~pd~~~~ee~L~~~l~~~  612 (1201)
T PF12128_consen  533 QLDPQKGSLLEFLRKNKPGWEQTIGKVIDEELLYRTDLEPQLVEDSGSDSLYGLSLDLSAIDVPDYAASEEELRERLEQA  612 (1201)
T ss_pred             hhCCCCCcHHHHHHhCCCcHHHHhHhhCCHHHhcCCCCCCeecCCCcccccceeEeehhhcCCchhhcChHHHHHHHHHH
Confidence            554333221000 001233321110000        0111    00    000      00 010     1233344567


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469          510 CNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA  546 (644)
Q Consensus       510 t~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~  546 (644)
                      ..+..+-..+..++|+++......+..++.++...+.
T Consensus       613 ~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~  649 (1201)
T PF12128_consen  613 EDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQ  649 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788888888888888888887777777777766555

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.20  E-value=0.048  Score=68.26  Aligned_cols=41  Identities=24%  Similarity=0.315  Sum_probs=22.5

Q ss_pred             HhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006469          247 VAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE  287 (644)
Q Consensus       247 ~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~  287 (644)
                      .+...++.......++....+..++.+...+..++......
T Consensus       810 ~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~  850 (1163)
T COG1196         810 DALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEE  850 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34445555555555566666666666666555555544433

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=98.19  E-value=0.032  Score=65.74  Aligned_cols=409  Identities=20%  Similarity=0.201  Sum_probs=195.1

Q ss_pred             ChhHHHhhHhHHHHHHHHhhHhhHHHHHHHHHHhHHhhcCCcH--HHHHhhHHHHHHhHHHHHHHhhhhhhhHHHHHHHh
Q 006469           32 DLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPE--EKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIY  109 (644)
Q Consensus        32 dl~~lq~~LD~~~~ei~~~q~~s~~sRK~La~~Tk~Fkk~~~~--ekl~~~~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y  109 (644)
                      -|+.+.+++-.--.++.+.=+.-+.-|-.|=..-++|.|+--+  +-+... .=.+.|-.|+|.|--+            
T Consensus       178 elAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea-~ra~~yrdeldalre~------------  244 (1195)
T KOG4643|consen  178 ELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEA-HRADRYRDELDALREQ------------  244 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHh------------
Confidence            3444444444444555555566777788888888888885322  222211 1245677777766544            


Q ss_pred             hhhhcCCCC--hHHHHHHHHHHHhhhhhhHhhHhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 006469          110 QKLYEAPDP--YPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEI  187 (644)
Q Consensus       110 ~~L~eaPDP--~PlLe~s~~~~~~~~~le~e~~~Lk~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~~e~~~~~~v~~  187 (644)
                         .|+|||  .|-|--+.=...++.++...|+-|.++-.=|+.++.+++.|-.- -.++..+.++.+++..+-..+-  
T Consensus       245 ---aer~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~-~tleseiiqlkqkl~dm~~erd--  318 (1195)
T KOG4643|consen  245 ---AERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG-ATLESEIIQLKQKLDDMRSERD--  318 (1195)
T ss_pred             ---hhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc-CChHHHHHHHHHHHHHHHHhhh--
Confidence               468887  33332222234466677777888877777777777777766622 1155555555554433221111  


Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHH
Q 006469          188 KQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQK---LHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQ  264 (644)
Q Consensus       188 ke~el~~~~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~---~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~  264 (644)
                                           ..+.|++.+...+..|+.   .+......+..+....+.+.-+..-|.+-|+.      
T Consensus       319 ---------------------tdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts------  371 (1195)
T KOG4643|consen  319 ---------------------TDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTS------  371 (1195)
T ss_pred             ---------------------hHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhh------
Confidence                                 111111111111111111   11111111111111111122233344444444      


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhh----hHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Q 006469          265 TRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSY----LENSLSAKEKIISELNSELHNIETALSNEREQHMN---E  337 (644)
Q Consensus       265 ~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~----le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~---~  337 (644)
                      .|+..++.+|-.+-..|...++..-.       +..+    ++.+-...+.++..|+..+..+-..+....+....   +
T Consensus       372 ~ralkllLEnrrlt~tleelqsss~E-------e~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E  444 (1195)
T KOG4643|consen  372 DRALKLLLENRRLTGTLEELQSSSYE-------ELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFE  444 (1195)
T ss_pred             HHHHHHHHHhHHHHHHHHHHhhhhHH-------HHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999998887766311       0111    11111223444555555555544444333322211   1


Q ss_pred             HHHHHHHHHHHHHHHHHH---HHHHhcCCChhhHHHHHHHHHHHHhcccCCcccchhhhhcchhhhchhHHHHHHHhhhh
Q 006469          338 IKKLNALLIEKEAALEDM---KKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKM  414 (644)
Q Consensus       338 ~~~L~~~l~~~~~~~~~L---~~~l~~~~~~sDYeeiKrEL~iLk~IEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL  414 (644)
                      ..+|............+-   ...+.+.  .++|+++..+...|+.-                  .+.+-..|-.+    
T Consensus       445 ~ekl~~e~~t~~~s~~rq~~e~e~~~q~--ls~~~Q~~~et~el~~~------------------iknlnk~L~~r----  500 (1195)
T KOG4643|consen  445 LEKLLEETSTVTRSLSRQSLENEELDQL--LSLQDQLEAETEELLNQ------------------IKNLNKSLNNR----  500 (1195)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHH------------------HHHHHHHHHHH----
Confidence            122222222222211111   1111111  23444444444444410                  11222222222    


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccC
Q 006469          415 EHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKK  494 (644)
Q Consensus       415 ~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (644)
                      ..+++.+-.....+...+......+..+...++++..+.--||..=..+..                             
T Consensus       501 ~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~Llk-----------------------------  551 (1195)
T KOG4643|consen  501 DLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLK-----------------------------  551 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-----------------------------
Confidence            223444444555555555555555555555555555554444443332221                             


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhh
Q 006469          495 HTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRF  557 (644)
Q Consensus       495 ~~~~~~~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkiry  557 (644)
                             --.-|.+-+.-+--|.+-|..+|-.-..+..-+.+|.    .|+.-=-+|=++|-.
T Consensus       552 -------qI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~idaL~----alrrhke~LE~e~mn  603 (1195)
T KOG4643|consen  552 -------QIQSLKTTSQNGALLEQNNNDLELIHNELKKYIDALN----ALRRHKEKLEEEIMN  603 (1195)
T ss_pred             -------HHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhh
Confidence                   1122444457788888888888888888888888877    344444467777633

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.15  E-value=0.031  Score=63.90  Aligned_cols=294  Identities=16%  Similarity=0.211  Sum_probs=145.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH---HhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006469          211 QDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEER---VAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE  287 (644)
Q Consensus       211 ~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~---~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~  287 (644)
                      ..+|+.+..+....-+.+..+..+|..++..|..-.   .......+..+.-++-...++..|-.++..|++.|..++..
T Consensus       115 k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a  194 (522)
T PF05701_consen  115 KAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLA  194 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555556666666655554332   22223444444445555555556666666666655554332


Q ss_pred             cCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh
Q 006469          288 AGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKM  367 (644)
Q Consensus       288 ~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sD  367 (644)
                      ...           -+.   ..-....+...+...+...+    ......+..|...+    .....|+.+|..-  ..+
T Consensus       195 ~~e-----------Aee---e~~~~~~~~~~~~~~~~~~l----eeae~~l~~L~~e~----~~~k~Le~kL~~a--~~~  250 (522)
T PF05701_consen  195 HIE-----------AEE---ERIEIAAEREQDAEEWEKEL----EEAEEELEELKEEL----EAAKDLESKLAEA--SAE  250 (522)
T ss_pred             HHH-----------HHH---HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH----HHHHHHHHHHHHH--HHH
Confidence            210           000   00000112222223333322    22233333444333    2234455555442  356


Q ss_pred             HHHHHHHHHHHHhcccCCcccchhhhhcchhhhchhHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          368 VDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNR---KMEHELTQLKVKLSEKTSLLETAEGKIAELTA  444 (644)
Q Consensus       368 YeeiKrEL~iLk~IEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNr---kL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~  444 (644)
                      ...++.||...+.-+.....+.............++..=|-+-+.   +...++..++.....|..+++....++..+..
T Consensus       251 l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke  330 (522)
T PF05701_consen  251 LESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKE  330 (522)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666665422221100000000000001111111222222   34577778888888888888888888888887


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 006469          445 KINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETE  524 (644)
Q Consensus       445 el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~rn~ELE  524 (644)
                      ........+..|+.+|..................                  ....+....|.-++..-+.++.......
T Consensus       331 ~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k------------------~~~~~l~~~Lqql~~Eae~Ak~ea~~~~  392 (522)
T PF05701_consen  331 REKEASSEVSSLEAELNKTRSELEAAKAEEEKAK------------------EAMSELPKALQQLSSEAEEAKKEAEEAK  392 (522)
T ss_pred             HHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchh------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777777776654320000000000                  0112566667777777778877777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Q 006469          525 EEVRQLKEKIGVLTAELEKTKA  546 (644)
Q Consensus       525 ~el~~~~~~i~~lr~E~~~Lk~  546 (644)
                      .++......+...+..+..+..
T Consensus       393 ~E~~~~k~E~e~~ka~i~t~E~  414 (522)
T PF05701_consen  393 EEVEKAKEEAEQTKAAIKTAEE  414 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777776666655

Several sequences in this family are described as being myosin heavy chain-like.

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=97.99  E-value=0.04  Score=63.41  Aligned_cols=45  Identities=11%  Similarity=0.186  Sum_probs=32.5

Q ss_pred             hHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006469          243 DEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE  287 (644)
Q Consensus       243 ~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~  287 (644)
                      ..+..++..|+-|+..||-..+..+.+++.+..++-++.+..+..
T Consensus       154 e~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~  198 (1265)
T KOG0976|consen  154 EDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKA  198 (1265)
T ss_pred             HHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHH
Confidence            345667788888888888888888777777766666665555444

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.96  E-value=0.099  Score=62.88  Aligned_cols=166  Identities=16%  Similarity=0.279  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          257 MDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMN  336 (644)
Q Consensus       257 ~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~  336 (644)
                      ...|.+.++.+..|+++.+..+.+...+....                  ......|..+..++..|...+..++..+..
T Consensus       404 ~E~lK~~~~k~kKleke~ek~~~~~~e~e~~p------------------e~~~~~i~~~~~ei~~L~~~~~~~~~~l~e  465 (1293)
T KOG0996|consen  404 EEKLKRLTSKIKKLEKEIEKARRKKSELEKAP------------------EKARIEIQKCQTEIEQLEELLEKEERELDE  465 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCc------------------hhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666667777777777776655443332                  222445677777777777777776666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhcccCCcccchhhhhcchhhhchhHHHHHHHhhhhhH
Q 006469          337 EIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEH  416 (644)
Q Consensus       337 ~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~  416 (644)
                      ....+.+.-.....++..++.++...  -.+..+.+.+++|..+                     -|+ +|+.+--...+
T Consensus       466 ~~~~l~~~t~~~~~e~~~~ekel~~~--~~~~n~~~~e~~vaes---------------------el~-~L~~~~~~~~~  521 (1293)
T KOG0996|consen  466 ILDSLKQETEGIREEIEKLEKELMPL--LKQVNEARSELDVAES---------------------ELD-ILLSRHETGLK  521 (1293)
T ss_pred             HHHHHhhhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH---------------------HHH-HHHHHHHHHHH
Confidence            66666665555555556666555543  2355555555555541                     011 24444444555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006469          417 ELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY  464 (644)
Q Consensus       417 eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~  464 (644)
                      .+..+...+......+......+..+..++...+..+.+.+.+|.+..
T Consensus       522 ~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~  569 (1293)
T KOG0996|consen  522 KVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLR  569 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHH
Confidence            555555555555555555555555555555555555555555555443

>PRK01156 chromosome segregation protein; Provisional

Probab=97.90  E-value=0.13  Score=62.58  Aligned_cols=35  Identities=20%  Similarity=0.302  Sum_probs=21.7

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469          251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN  285 (644)
Q Consensus       251 aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~  285 (644)
                      .+++-+...++..+.++..+..+...|+..+....
T Consensus       409 ~~~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~  443 (895)
T PRK01156        409 KELNEINVKLQDISSKVSSLNQRIRALRENLDELS  443 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455556666666677777777777776555444

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.79  E-value=0.16  Score=60.22  Aligned_cols=37  Identities=27%  Similarity=0.377  Sum_probs=28.7

Q ss_pred             hhhHhhHhHHHHHHHHHHHHhHhhhhHHHHHHHHHHH
Q 006469          134 ELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERN  170 (644)
Q Consensus       134 ~le~e~~~Lk~el~~l~~e~a~lk~q~~~~~~Lke~~  170 (644)
                      ..+.+++.-+.++++++.++..+.++-...+.|++.+
T Consensus       681 ~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql  717 (1174)
T KOG0933|consen  681 QAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQL  717 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667777778888888888888888887777777643

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.76  E-value=0.29  Score=62.22  Aligned_cols=22  Identities=9%  Similarity=0.040  Sum_probs=15.5

Q ss_pred             CCCch-hhHHHHHHHHhhcChhH
Q 006469          581 GFTSD-IESKYKKMYEDDINPFA  602 (644)
Q Consensus       581 ~~~~d-~e~~Y~~~YE~~L~Pf~  602 (644)
                      ++.++ |...|..++++.++|-.
T Consensus       688 sel~~~v~~~~~~~~~A~lg~~~  710 (1486)
T PRK04863        688 SEIYDDVSLEDAPYFSALYGPAR  710 (1486)
T ss_pred             hHhhhccCcchHHHHHHHHHhhh
Confidence            44455 77788888888887754

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=97.71  E-value=0.16  Score=61.48  Aligned_cols=116  Identities=14%  Similarity=0.155  Sum_probs=65.1

Q ss_pred             hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC---CC--CCCCCCC
Q 006469          403 MESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKD---RK--GNVFDDW  477 (644)
Q Consensus       403 LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~---~~--~~~~~~~  477 (644)
                      ++.-+--+-+-+++++......+..+  +|..-..+.....+.+.+.+....++++++..+.....   ..  ++.-..|
T Consensus       668 ~e~~~e~~lk~~q~~~eq~~~E~~~~--~L~~~e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~  745 (1317)
T KOG0612|consen  668 LEIKLERKLKMLQNELEQENAEHHRL--RLQDKEAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKLN  745 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhccchh
Confidence            44445555556677777777777666  55555666777777777777777777776666654321   00  0000000


Q ss_pred             ccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          478 DLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGV  536 (644)
Q Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~  536 (644)
                      ..-                .......+..--+++|.+++-..-.-+..+|+.+.+.+..
T Consensus       746 ~l~----------------r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLssq~~~~~t  788 (1317)
T KOG0612|consen  746 ELR----------------RSKDQLITEVLKLQSMLEQEISKRLSLQRELKSQEQEVNT  788 (1317)
T ss_pred             hhh----------------hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHhhcc
Confidence            000                0012444555667777777777777777777755554443

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.70  E-value=0.18  Score=64.08  Aligned_cols=318  Identities=18%  Similarity=0.235  Sum_probs=149.8

Q ss_pred             HHHHHhHHHHHHHhh-------------hhhhhHHHHHHHhhhhhcCCCChHHHHHHHHHHHhhhhhhHhhHhHHHHHHH
Q 006469           82 SLLKGYQEEVDNLTK-------------RAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEE  148 (644)
Q Consensus        82 ~LLK~yQ~EID~LTk-------------RsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~le~e~~~Lk~el~~  148 (644)
                      .+|..-+.|+|.+..             |--.+=+.|+++.=.+.=+|||.|.|..+.....   +++..+..+..+...
T Consensus       786 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~f~~~pe~~~~~~~~~~~---~~~~~l~~~~~~~~~  862 (1486)
T PRK04863        786 KRIEQLRAEREELAERYATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEAELRQLNRRRV---ELERALADHESQEQQ  862 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCcchhcCCCcHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence            345555566666543             3333446788888888889999999987655433   233333333333333


Q ss_pred             HHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          149 YRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLH  228 (644)
Q Consensus       149 l~~e~a~lk~q~~~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~  228 (644)
                      ....+..++.+..-..+|.-.+.-|   .++++..++.+.+.++..                   ...+..=+......+
T Consensus       863 ~~~~~~~~~~~~~~l~~~~~~~~~l---~~~~~~~~~~~~~~~~~~-------------------~~~a~~y~~~~~~~L  920 (1486)
T PRK04863        863 QRSQLEQAKEGLSALNRLLPRLNLL---ADETLADRVEEIREQLDE-------------------AEEAKRFVQQHGNAL  920 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHhchhhhhc---CCccHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHH
Confidence            3333333333333322222211111   122233333332222221                   111222233333333


Q ss_pred             HHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhh
Q 006469          229 ELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSA  308 (644)
Q Consensus       229 e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~  308 (644)
                      ...+..|..++  |+.      .+++.+..+.+-|.++...+.++.-.|..=.+-...-+-.....-.+.++.+-..+  
T Consensus       921 ~qLE~~l~~L~--~Dp------~~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~l~~~~~~~~~L--  990 (1486)
T PRK04863        921 AQLEPIVSVLQ--SDP------EQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKL--  990 (1486)
T ss_pred             HHHHHHHHHhC--CCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHhhcchhhhHHH--
Confidence            43444444442  232      44566666777766666666666665554333222111111000001112221111  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhcccCCccc
Q 006469          309 KEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEA  388 (644)
Q Consensus       309 ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf~~~d~  388 (644)
                       +..|.+++++...+...+           .+.+.+.......+..++..++..  ...|.+.+.+   |..+.+..+.+
T Consensus       991 -e~~Le~iE~~~~~areql-----------~qaq~q~~q~~q~l~slksslq~~--~e~L~E~eqe---~~~~g~~~~~~ 1053 (1486)
T PRK04863        991 -RQRLEQAEQERTRAREQL-----------RQAQAQLAQYNQVLASLKSSYDAK--RQMLQELKQE---LQDLGVPADSG 1053 (1486)
T ss_pred             -HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH---HHHcCCCCCcc
Confidence             222333333333333222           222333333333333444433321  1233333333   33444433211


Q ss_pred             chhhhhcchhhhchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006469          389 EDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS  465 (644)
Q Consensus       389 ~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~  465 (644)
                                    .|.-+..+-..|...|..-|.....+...+...+.++..+...+.........++..+..+..
T Consensus      1054 --------------~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~ 1116 (1486)
T PRK04863       1054 --------------AEERARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKA 1116 (1486)
T ss_pred             --------------HHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          122233444778888888888888888888888888888877777777777777777776664

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=97.69  E-value=0.2  Score=58.22  Aligned_cols=145  Identities=21%  Similarity=0.287  Sum_probs=81.0

Q ss_pred             hhHhHHHHHHHHHHHHhHhhhhHHHHH-HHH--HHH-HHHHHHHHHhHHHHHHHHHhhhHHHHHHHH---HHHHHHHHHH
Q 006469          138 ENRKMKIELEEYRTEATHLKNQQSTIR-RLE--ERN-RQLEQQMEEKVKEIVEIKQRGLAEENQKTL---EILQEREQAL  210 (644)
Q Consensus       138 e~~~Lk~el~~l~~e~a~lk~q~~~~~-~Lk--e~~-~~le~~~e~~~~~~v~~ke~el~~~~~ek~---~~~~erE~~L  210 (644)
                      .|..|+.++.+++.-|-.+.|.-.++. .|.  ..+ ++|..++.     .+..+-..+...+..|-   ..|......+
T Consensus       161 QN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~-----~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~  235 (617)
T PF15070_consen  161 QNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLG-----ELQEKLHNLKEKLELKSQEAQSLQEQRDQY  235 (617)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            688999999999999999998875421 111  111 12222221     11112222222222221   1233333334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch---HHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006469          211 QDQLRQAKDSVATMQKLHELAQSQLFEVRAQSD---EERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE  287 (644)
Q Consensus       211 ~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~---~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~  287 (644)
                      -..|......-.-+.+..++.+.+++-...-.+   ....--...++|.+.+|..++.++..+...|++|+.+|......
T Consensus       236 ~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~~~  315 (617)
T PF15070_consen  236 LGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQLSLMALP  315 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCC
Confidence            445555544445555555665555442211111   11111235678899999999999999999999999999865443

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.68  E-value=0.18  Score=59.04  Aligned_cols=59  Identities=24%  Similarity=0.318  Sum_probs=43.9

Q ss_pred             HHHHhhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006469          407 LLDKNRKME----HELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS  465 (644)
Q Consensus       407 Ll~kNrkL~----~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~  465 (644)
                      |.+-|+.++    .+|..+..-.-++..+.+..++-+-...+.|-+++.+++.|-..|....+
T Consensus       484 L~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~d  546 (1243)
T KOG0971|consen  484 LQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTD  546 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            777777655    44455555566777888888888888888899999999999877766654

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.65  E-value=0.15  Score=55.69  Aligned_cols=191  Identities=19%  Similarity=0.213  Sum_probs=116.0

Q ss_pred             HHHHHHHhhhhhhhHHHHHHHhhhhhcCCCChHHHHHHHHHHHhhhhhhHhhHhHHHHHHHHHHHHhHhhhhHHHHHHHH
Q 006469           88 QEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLE  167 (644)
Q Consensus        88 Q~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~le~e~~~Lk~el~~l~~e~a~lk~q~~~~~~Lk  167 (644)
                      -..+|.+.+-++. |..|.... ..--||+|.|.+.-=.+      .-+.|+..+.+++++...-.+..+...+.|..|+
T Consensus       190 ~~~ld~wg~~~~t-~~df~f~~-t~dPa~p~~p~~~~pas------se~ee~eel~eq~eeneel~ae~kqh~v~~~ale  261 (521)
T KOG1937|consen  190 RKWLDQWGNSSHT-EKDFNFKL-TDDPALPPKPIFAKPAS------SEEEEVEELTEQNEENEELQAEYKQHLVEYKALE  261 (521)
T ss_pred             hhHHHHHhccCCc-ccccccee-cCCCCCCCccccCCCcc------ccchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            4578888877777 55554443 34457788887543211      1234567777777777666777777777888888


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 006469          168 ERNRQLEQQMEEKVKEIVEIKQR--GLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE  245 (644)
Q Consensus       168 e~~~~le~~~e~~~~~~v~~ke~--el~~~~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~  245 (644)
                      ++-..++....+. +..+..++.  +.-+.-......+..+-..++.++..+..+....+-.+...-..|.+.....+.+
T Consensus       262 s~~sq~~e~~sel-E~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e  340 (521)
T KOG1937|consen  262 SKRSQFEEQNSEL-EKLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETE  340 (521)
T ss_pred             hhhHHHHHHHHHH-HHHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccch
Confidence            7766654432211 122222222  2222333334444555555666666666666666666655555554443322222


Q ss_pred             HHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 006469          246 RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA  288 (644)
Q Consensus       246 ~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~  288 (644)
                      . .....+.-+..||+.+.+++..=|..++.|+.+|+..-.+.
T Consensus       341 ~-~e~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv  382 (521)
T KOG1937|consen  341 D-EEIRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDV  382 (521)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchh
Confidence            1 22578888999999999999988899999999988755544

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=97.61  E-value=0.032  Score=62.97  Aligned_cols=84  Identities=19%  Similarity=0.210  Sum_probs=52.1

Q ss_pred             hhHHHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhhcCCCChHHHHHHHHHHH-hhhhhhHhhHhHHHHHHHHHHHHhHhh
Q 006469           79 LFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDL-KLSELESENRKMKIELEEYRTEATHLK  157 (644)
Q Consensus        79 ~~~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~-~~~~le~e~~~Lk~el~~l~~e~a~lk  157 (644)
                      .+.-=++.-+.||+.|-++--.++..-..+=..+.+.-++..-|++-..... +...+++++..|+.++..+..+|..++
T Consensus       110 ~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r  189 (546)
T KOG0977|consen  110 KLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR  189 (546)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            3333344445566666665555555555555555555555555555444332 334688889999999999888888888


Q ss_pred             hhHHH
Q 006469          158 NQQST  162 (644)
Q Consensus       158 ~q~~~  162 (644)
                      .+...
T Consensus       190 ~~ld~  194 (546)
T KOG0977|consen  190 KQLDD  194 (546)
T ss_pred             HHHHH
Confidence            76653

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.59  E-value=0.23  Score=56.33  Aligned_cols=58  Identities=19%  Similarity=0.207  Sum_probs=45.4

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006469          407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY  464 (644)
Q Consensus       407 Ll~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~  464 (644)
                      |.+.+.+...+-+.+.........++..|..++..+..-+++-+....+|+.+|....
T Consensus       348 lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~  405 (546)
T PF07888_consen  348 LKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEK  405 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4555566777777777666666678888999999999999999999999999986543

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK11281 hypothetical protein; Provisional

Probab=97.57  E-value=0.15  Score=62.88  Aligned_cols=180  Identities=14%  Similarity=0.108  Sum_probs=85.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006469          252 EVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNER  331 (644)
Q Consensus       252 Eleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r  331 (644)
                      .+--+..-.|||+.++.+...|..+++.+|........+   ........+..++...+.++.-++.+...    .....
T Consensus       150 qLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~---l~~~~~~~l~ae~~~l~~~~~~~~~~l~~----~~~l~  222 (1113)
T PRK11281        150 QLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKA---LRPSQRVLLQAEQALLNAQNDLQRKSLEG----NTQLQ  222 (1113)
T ss_pred             HHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc---CCHHHHHHHHHHHHHHHHHHHHHHHHHhc----chHHH
Confidence            344455668899999999999999999988653322211   00111123444444444443333322221    11111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhcccCCcccchhhhhcchhhhchhHHHHHHHh
Q 006469          332 EQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKN  411 (644)
Q Consensus       332 ~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf~~~d~~~~~~a~~~~~~~~LE~lLl~kN  411 (644)
                      +-...+..-+..++......++.|+..+...    --.+-...+   +..+-  .+..      ......++=+-+++.|
T Consensus       223 ~l~~~q~d~~~~~~~~~~~~~~~lq~~in~k----r~~~se~~~---~~a~~--~~~~------~~~~~~p~i~~~~~~N  287 (1113)
T PRK11281        223 DLLQKQRDYLTARIQRLEHQLQLLQEAINSK----RLTLSEKTV---QEAQS--QDEA------ARIQANPLVAQELEIN  287 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH---HHHhh--hhhh------cccCCChHHHHHHHHH
Confidence            1111111222222233333333333333321    000101111   11100  0000      0011234444467889


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          412 RKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLI  453 (644)
Q Consensus       412 rkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li  453 (644)
                      ++|...|...-...+.+..+.......+..+.+.....++-+
T Consensus       288 ~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi  329 (1113)
T PRK11281        288 LQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQI  329 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998888888777777777777777777666655444443

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.55  E-value=0.044  Score=62.99  Aligned_cols=52  Identities=15%  Similarity=0.291  Sum_probs=36.4

Q ss_pred             hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          403 MESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQK  455 (644)
Q Consensus       403 LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~k  455 (644)
                      ++. +..+++.++.++..|.....++..++..+..++..+..++.+.......
T Consensus       353 i~~-~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~  404 (562)
T PHA02562        353 LIT-LVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYH  404 (562)
T ss_pred             HHH-HHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444 6667778888888888887777777777777777776666666555544

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=97.51  E-value=0.3  Score=55.76  Aligned_cols=35  Identities=14%  Similarity=0.367  Sum_probs=30.7

Q ss_pred             HHh-hhcCCchhhHHHhhhhhhhcchhhhHhHhhcC
Q 006469          610 DQR-YKELGIRDRITLSSGRFLLGNKYNLLYLFLFS  644 (644)
Q Consensus       610 ~r~-~~~l~~~er~~l~~~r~vL~nr~~R~~f~~Y~  644 (644)
                      .|+ .+.++.+|.+.+.+|.|+=.....|.||+|||
T Consensus       470 ~~r~~~a~~~iD~~~ir~g~fLrr~p~~R~~~i~Y~  505 (511)
T PF09787_consen  470 ARRVKRAASVIDSFSIRLGIFLRRYPMARIFVIIYM  505 (511)
T ss_pred             HHHHHHHHHHHhHhhHHHHHHHhcCHHHHHHHHHHH
Confidence            444 45588999999999999999999999999996

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.50  E-value=6.2e-05  Score=89.11  Aligned_cols=200  Identities=19%  Similarity=0.217  Sum_probs=0.0

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006469          251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNE  330 (644)
Q Consensus       251 aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~  330 (644)
                      .+.+....+|..++..+...+..+..|..+|..........            ..+...-..|..|+.+|.++.+.+..+
T Consensus       209 ~e~e~~~~~L~~~q~~~~e~e~~i~~Le~el~~~~~~~~i~------------k~l~~ql~~i~~LE~en~~l~~Elk~L  276 (722)
T PF05557_consen  209 QEAEQQLQELQASQASLAEAEQKIKELEAELKDQESDAEIN------------KELKEQLAHIRELEKENRRLREELKHL  276 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHhhHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444555666666666667777777777765544443111            011111123777888888888777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCChhhHHHHHHHHHHHHhcccCCcc-cch-hhhhcchhhhchhHH
Q 006469          331 REQHMNEIKKLNALLIEKEAALEDMK---KELQARPTSKMVDDLRKKVKILQAVGYNSIE-AED-WEVATNDEEMSKMES  405 (644)
Q Consensus       331 r~~~~~~~~~L~~~l~~~~~~~~~L~---~~l~~~~~~sDYeeiKrEL~iLk~IEf~~~d-~~~-~~~a~~~~~~~~LE~  405 (644)
                      +..+.+. .-|+.+...+...+..++   .++..+  .-.+..|..++.--.++--..+. -+. ++.+..-..-..=..
T Consensus       277 r~~~~n~-elLeEe~~sLq~kl~~~E~~~~el~~l--q~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~  353 (722)
T PF05557_consen  277 RQSQENV-ELLEEEKRSLQRKLERLEELEEELAEL--QLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENA  353 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence            7655432 223333333222222222   111111  11233334443333322111000 000 000000000011155


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006469          406 LLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS  465 (644)
Q Consensus       406 lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~  465 (644)
                      .|++++..++.++..++..+.++..++..+...+..+...+.....++.+||..+.-+..
T Consensus       354 ~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~k  413 (722)
T PF05557_consen  354 SLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATK  413 (722)
T ss_dssp             ------------------------------------------------------------
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999999999999999999999887765553

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.45  E-value=0.12  Score=60.79  Aligned_cols=60  Identities=20%  Similarity=0.247  Sum_probs=32.9

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 006469          407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSS  466 (644)
Q Consensus       407 Ll~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~  466 (644)
                      |.+||..|++-|..--.-..+|=..|-....++.-+...+-..+..|..|-..|..+-..
T Consensus       599 mqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av  658 (697)
T PF09726_consen  599 MQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAV  658 (697)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            666777777777654444444555555555555555555555555555555544444443

; GO: 0016021 integral to membrane

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=97.45  E-value=0.36  Score=55.27  Aligned_cols=59  Identities=12%  Similarity=0.220  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhhhccccc
Q 006469          506 LKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNE  564 (644)
Q Consensus       506 L~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkirylqsy~~~  564 (644)
                      ...........+..+......+.....++.....++...+..=-.-...|+-|+.+...
T Consensus       388 a~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~~~  446 (522)
T PF05701_consen  388 AEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSESESS  446 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            34444455555555555556666666666666666666666555555588888776543

Several sequences in this family are described as being myosin heavy chain-like.

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.45  E-value=0.22  Score=57.23  Aligned_cols=66  Identities=8%  Similarity=0.128  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469          209 ALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN  285 (644)
Q Consensus       209 ~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~  285 (644)
                      .++.++..+..+...++..++..+.++.++..           +++.+...|..++..+..++...+.+...+...+
T Consensus       217 ~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~-----------~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~  282 (562)
T PHA02562        217 RKQNKYDELVEEAKTIKAEIEELTDELLNLVM-----------DIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYE  282 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33444444444444455555544545544432           2233334455666666667777777776666654

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=97.44  E-value=0.38  Score=55.90  Aligned_cols=34  Identities=18%  Similarity=0.162  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006469          432 LETAEGKIAELTAKINEQQKLIQKLEDDILKGYS  465 (644)
Q Consensus       432 l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~  465 (644)
                      ++....++..+...++.+..-|..|...|..+..
T Consensus       281 ~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~~  314 (617)
T PF15070_consen  281 LEMAHQELQEAQEHLEALSQQNQQLQAQLSLMAL  314 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcC
Confidence            3455566677777788888888888888876543

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=97.41  E-value=3.4e-05  Score=92.58  Aligned_cols=49  Identities=14%  Similarity=0.255  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHH
Q 006469          209 ALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLM  257 (644)
Q Consensus       209 ~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~  257 (644)
                      .|..+++.-......++..+...+.+|.+|+.+|+.+......+++-..
T Consensus       275 ~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaK  323 (859)
T PF01576_consen  275 QLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAK  323 (859)
T ss_dssp             -------------------------------------------------
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            3444555444555566666677777888888888877555455544333

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=97.34  E-value=0.53  Score=55.29  Aligned_cols=235  Identities=18%  Similarity=0.215  Sum_probs=133.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH---HhhHHhHHHHHHHHHHHHH-------HHHHHHHH
Q 006469          204 QEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEER---VAKQSEVNLLMDEVERAQT-------RLLSLQRE  273 (644)
Q Consensus       204 ~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~---~a~~aEleml~~dLEra~~-------R~~~lE~e  273 (644)
                      ..+|..|..++..++..++.++..+..++.+...+...+.+..   .....+..-+..|+--...       ...+||-+
T Consensus        26 a~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeE  105 (717)
T PF09730_consen   26 ASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEE  105 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            4566677777777777777777777777766655543322221   1111222233333332222       23356666


Q ss_pred             HHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          274 KDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALE  353 (644)
Q Consensus       274 ne~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~  353 (644)
                      |=.|..+++..+++-             .+  .....-+|.+|.+|+.-|...++.+-.-..    -.+   +.+...+.
T Consensus       106 NislQKqvs~Lk~sQ-------------ve--fE~~Khei~rl~Ee~~~l~~qlee~~rLk~----iae---~qleEALe  163 (717)
T PF09730_consen  106 NISLQKQVSVLKQSQ-------------VE--FEGLKHEIKRLEEEIELLNSQLEEAARLKE----IAE---KQLEEALE  163 (717)
T ss_pred             HHHHHHHHHHHHHhH-------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH---HHHHHHHH
Confidence            666666666555442             11  112234566777777776666654322211    111   12223455


Q ss_pred             HHHHHHhcCCChhhHHHHHHHHHHHHhccc----------------CCc-------ccchhh--hh---c------ch--
Q 006469          354 DMKKELQARPTSKMVDDLRKKVKILQAVGY----------------NSI-------EAEDWE--VA---T------ND--  397 (644)
Q Consensus       354 ~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf----------------~~~-------d~~~~~--~a---~------~~--  397 (644)
                      .|+.+.+.      =-.+|+||.....++-                ...       ++|++.  +.   .      .|  
T Consensus       164 sl~~EReq------k~~LrkEL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  237 (717)
T PF09730_consen  164 SLKSEREQ------KNALRKELDQHLNIESISYLSNLAISLDGLKFSEDPRAATEPNNDDEEENGGLNGGPGLAKGNGDN  237 (717)
T ss_pred             HHHHHHHH------HHHHHHHHHHhcCccccccccchhhcccccccccccccccCCCCchhhhcchhhccchhccccccc
Confidence            55555443      2567777777444321                110       011110  00   0      00  


Q ss_pred             --------hh--h-ch-hHHHHH----HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          398 --------EE--M-SK-MESLLL----DKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDIL  461 (644)
Q Consensus       398 --------~~--~-~~-LE~lLl----~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~  461 (644)
                              ..  + .+ +.-|+-    .=-.+|..+|.........|...++..+.++......++++...|..|-..|.
T Consensus       238 ~~~~~~~~~~~~p~~~lv~DLfSEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~  317 (717)
T PF09730_consen  238 RMSTPRKSESFSPAPSLVSDLFSELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLD  317 (717)
T ss_pred             ccCCCCCCCCCCCCCcccchhhhhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    00  0 11 233333    33478999999999999999999999999999999999999999999999999


Q ss_pred             hhccc
Q 006469          462 KGYSS  466 (644)
Q Consensus       462 ~~~~~  466 (644)
                      .+...
T Consensus       318 aL~~l  322 (717)
T PF09730_consen  318 ALRKL  322 (717)
T ss_pred             HHhhh
Confidence            88763

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.33  E-value=0.57  Score=56.49  Aligned_cols=16  Identities=19%  Similarity=0.223  Sum_probs=11.9

Q ss_pred             hHHHHHHHHhhcChhH
Q 006469          587 ESKYKKMYEDDINPFA  602 (644)
Q Consensus       587 e~~Y~~~YE~~L~Pf~  602 (644)
                      +++|..++|..|+-.+
T Consensus       507 ~~KWa~aIE~~L~n~l  522 (1074)
T KOG0250|consen  507 EPKWALAIERCLGNLL  522 (1074)
T ss_pred             CcHHHHHHHHHHHHhh
Confidence            4599999998776443

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.26  E-value=0.48  Score=57.06  Aligned_cols=179  Identities=18%  Similarity=0.300  Sum_probs=89.9

Q ss_pred             hhhHhhHhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 006469          134 ELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQ  213 (644)
Q Consensus       134 ~le~e~~~Lk~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~~~~~erE~~L~~q  213 (644)
                      ..+.++..++.++.+++..+..+.    ...-+.+++..|..+   ..=..|..++..+... .+.+...+++...++++
T Consensus       232 ~~~e~i~~l~k~i~e~~e~~~~~~----~~e~~~~~l~~Lk~k---~~W~~V~~~~~ql~~~-~~~i~~~qek~~~l~~k  303 (1074)
T KOG0250|consen  232 LKEEEIKNLKKKIKEEEEKLDNLE----QLEDLKENLEQLKAK---MAWAWVNEVERQLNNQ-EEEIKKKQEKVDTLQEK  303 (1074)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            344555556666665555555432    122233333333333   3445566666666643 33445556666777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH
Q 006469          214 LRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQT--------------RLLSLQREKDLLRS  279 (644)
Q Consensus       214 l~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~--------------R~~~lE~ene~Lr~  279 (644)
                      ++....++.+++..+..-+.++..+...    ..+...|++-+..|+..+..              .+..+..++..|+.
T Consensus       304 i~~~~~k~~~~r~k~teiea~i~~~~~e----~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k  379 (1074)
T KOG0250|consen  304 IEEKQGKIEEARQKLTEIEAKIGELKDE----VDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEK  379 (1074)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHh----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777776666555555554332    22333444444444433322              22333333334444


Q ss_pred             HHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          280 QLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQH  334 (644)
Q Consensus       280 eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~  334 (644)
                      +++.++....          -.+..++...+.++..|..++..++..+.+++...
T Consensus       380 ~I~~~~~~~~----------~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~  424 (1074)
T KOG0250|consen  380 QIADLEKQTN----------NELGSELEERENKLEQLKKEVEKLEEQINSLREEL  424 (1074)
T ss_pred             HHHHHHHHHH----------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4443333220          03334455556667777777777666555555443

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.23  E-value=0.16  Score=51.89  Aligned_cols=130  Identities=22%  Similarity=0.309  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 006469          209 ALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA  288 (644)
Q Consensus       209 ~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~  288 (644)
                      ++..++...+..|.+++...+.++..+.         ......|+.-|..++..|+.|+..|+.+...|..++..     
T Consensus        56 ~le~qv~~~e~ei~~~r~r~~~~e~kl~---------~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~-----  121 (239)
T COG1579          56 DLENQVSQLESEIQEIRERIKRAEEKLS---------AVKDERELRALNIEIQIAKERINSLEDELAELMEEIEK-----  121 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh---------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            4556666667777777777766654441         22335677888888888888888888887777766433     


Q ss_pred             CCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhH
Q 006469          289 GSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMV  368 (644)
Q Consensus       289 ~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDY  368 (644)
                                          ++.+|..+...+..++..+...+......+..+.++.........+|..++..- -.+-|
T Consensus       122 --------------------l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~e-ll~~y  180 (239)
T COG1579         122 --------------------LEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPE-LLSEY  180 (239)
T ss_pred             --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-HHHHH
Confidence                                355688888888888888888888888889999888888888888888877642 14567


Q ss_pred             HHHHH
Q 006469          369 DDLRK  373 (644)
Q Consensus       369 eeiKr  373 (644)
                      +-|++
T Consensus       181 eri~~  185 (239)
T COG1579         181 ERIRK  185 (239)
T ss_pred             HHHHh
Confidence            76554

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.22  E-value=0.67  Score=53.40  Aligned_cols=45  Identities=11%  Similarity=0.108  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhhhcc
Q 006469          517 RARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDY  561 (644)
Q Consensus       517 r~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkirylqsy  561 (644)
                      ..++.+|.+.|+.......-+..++.-|..-+.+.|-=..-++.|
T Consensus       383 ~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~  427 (716)
T KOG4593|consen  383 ETKLKELHETLARRLQKRALLLTQERDLNRAILGSKDDEKRLAEE  427 (716)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence            345555666666666555655666655655555555444444444

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.21  E-value=0.16  Score=59.89  Aligned_cols=104  Identities=25%  Similarity=0.329  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhh--------------hHHHHHHHHHHHHHHHHH
Q 006469          261 ERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSA--------------KEKIISELNSELHNIETA  326 (644)
Q Consensus       261 Era~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~--------------ke~~i~~L~~e~~~L~~~  326 (644)
                      |.-.+|..+||.|...||.+|........           .++.++..              .=..++-|.+.+.+|+.+
T Consensus       541 e~~r~r~~~lE~E~~~lr~elk~kee~~~-----------~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~s  609 (697)
T PF09726_consen  541 ESCRQRRRQLESELKKLRRELKQKEEQIR-----------ELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENS  609 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            34456777777777777777765444321           12221110              001133455555566655


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhc
Q 006469          327 LSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAV  381 (644)
Q Consensus       327 l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~I  381 (644)
                      |..+-.-    .-+|=..|.+...+++-++..+.+.  -.++.+||..|.-|-+|
T Consensus       610 LsaEtri----KldLfsaLg~akrq~ei~~~~~~~~--d~ei~~lk~ki~~~~av  658 (697)
T PF09726_consen  610 LSAETRI----KLDLFSALGDAKRQLEIAQGQLRKK--DKEIEELKAKIAQLLAV  658 (697)
T ss_pred             hhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhc
Confidence            5443221    1334444566666677777777766  36888888888777766

; GO: 0016021 integral to membrane

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=97.21  E-value=7.9e-05  Score=89.46  Aligned_cols=59  Identities=15%  Similarity=0.229  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHhHHhhcCCcH--HHHHhhHHHHHHhHHHHHHHhhhhhhhHHHHHHHhhhh
Q 006469           54 SQKNRRKLAESTRDFKKASPE--EKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKL  112 (644)
Q Consensus        54 s~~sRK~La~~Tk~Fkk~~~~--ekl~~~~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L  112 (644)
                      +...+|.|=..-.+++.--++  .-+..+.....-+++||+.|++.--.+|+.+..+-+.-
T Consensus       178 ~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k  238 (859)
T PF01576_consen  178 AEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREK  238 (859)
T ss_dssp             -------------------------------------------------------------
T ss_pred             HHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344466666666666653333  34667777788899999999999999999888887643

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.20  E-value=0.34  Score=49.70  Aligned_cols=13  Identities=23%  Similarity=0.636  Sum_probs=10.1

Q ss_pred             hHHHHHHHHHHHH
Q 006469          367 MVDDLRKKVKILQ  379 (644)
Q Consensus       367 DYeeiKrEL~iLk  379 (644)
                      -|+++-+.|.++.
T Consensus       114 k~~E~~rkl~~~E  126 (237)
T PF00261_consen  114 KYEEVERKLKVLE  126 (237)
T ss_dssp             HHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            5888888888776

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=97.19  E-value=0.39  Score=50.16  Aligned_cols=47  Identities=19%  Similarity=0.241  Sum_probs=39.5

Q ss_pred             chHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 006469          242 SDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA  288 (644)
Q Consensus       242 ~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~  288 (644)
                      |.......-+|-.|+.+.||.-.+--..||.+++..|..|++|-.+.
T Consensus        61 y~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~  107 (305)
T PF14915_consen   61 YNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDH  107 (305)
T ss_pred             HhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            44444555678899999999999999999999999999999988764

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=97.19  E-value=0.88  Score=54.10  Aligned_cols=158  Identities=18%  Similarity=0.233  Sum_probs=90.2

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHH
Q 006469          188 KQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRL  267 (644)
Q Consensus       188 ke~el~~~~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~  267 (644)
                      .++-++..+-.+...|......|+.+|..+...+..+.+...+.-.-|.+-..    .......+-.-+-.|+.-...|+
T Consensus        68 ~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~----~i~~l~~~~~~~e~~~~~l~~~l  143 (769)
T PF05911_consen   68 QEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEK----LIAELSEEKSQAEAEIEDLMARL  143 (769)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHH
Confidence            34444445555556666666677777777777776666655543332321111    11111222233344555666789


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          268 LSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIE  347 (644)
Q Consensus       268 ~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~  347 (644)
                      ..+|++|..|+-++-..                       .++-+|.-.+-++.+-.  .+....++-.-+.+    +..
T Consensus       144 ~~~eken~~Lkye~~~~-----------------------~keleir~~E~~~~~~~--ae~a~kqhle~vkk----iak  194 (769)
T PF05911_consen  144 ESTEKENSSLKYELHVL-----------------------SKELEIRNEEREYSRRA--AEAASKQHLESVKK----IAK  194 (769)
T ss_pred             HHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHH----HHH
Confidence            99999999999887432                       33334444444443321  22222233222222    244


Q ss_pred             HHHHHHHHHHHHhcC-CChhhHHHHHHHHHHH
Q 006469          348 KEAALEDMKKELQAR-PTSKMVDDLRKKVKIL  378 (644)
Q Consensus       348 ~~~~~~~L~~~l~~~-~~~sDYeeiKrEL~iL  378 (644)
                      ++.+...|...+.+. |.++-...+|.|+..|
T Consensus       195 LEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~  226 (769)
T PF05911_consen  195 LEAECQRLRALVRKKLPGPAALAQMKNEVESL  226 (769)
T ss_pred             HHHHHHHHHHHHhccCCChHHHHHhHHHHHHh
Confidence            455677888887754 9999999999999999

The function of this family is unknown.

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.16  E-value=1  Score=54.57  Aligned_cols=62  Identities=27%  Similarity=0.200  Sum_probs=42.5

Q ss_pred             hhcCChhHHHhhHhHHHHHHHHhhHhhHHHHHHHHHHhHHhhcCC--cHHHHHhhHHHHHHhHHHHH
Q 006469           28 WKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKAS--PEEKLSLFNSLLKGYQEEVD   92 (644)
Q Consensus        28 W~~~dl~~lq~~LD~~~~ei~~~q~~s~~sRK~La~~Tk~Fkk~~--~~ekl~~~~~LLK~yQ~EID   92 (644)
                      |+.+.   .|..+-..-..|+..+......+..|-+....|.-..  --+|...++.-+|.++.+++
T Consensus       320 ~~~~~---~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~k  383 (1293)
T KOG0996|consen  320 KKNKL---CQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELK  383 (1293)
T ss_pred             HHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            55443   2444555677888888888888888888888887433  33667777777776666554

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.13  E-value=1  Score=53.71  Aligned_cols=252  Identities=17%  Similarity=0.252  Sum_probs=132.1

Q ss_pred             HhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHH
Q 006469          237 EVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISEL  316 (644)
Q Consensus       237 ~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L  316 (644)
                      ..+....+.+....++++-+..+.++....+.+++.....|+.+.+++...-.           ....+.-..+-+|.+|
T Consensus       244 ~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t-----------~~~k~kt~lel~~kdl  312 (1200)
T KOG0964|consen  244 EDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARET-----------KISKKKTKLELKIKDL  312 (1200)
T ss_pred             HHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhhhhhhhhHHH
Confidence            33334444444555666666777777777777777777777776665543321           1111111223445566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhcccCCcccchhhhhcc
Q 006469          317 NSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATN  396 (644)
Q Consensus       317 ~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf~~~d~~~~~~a~~  396 (644)
                      ..++..-..    .+...-....++...+.+...++..++-+-+++  ...-+..+..|..|+.-    .  -+- .+-.
T Consensus       313 q~~i~~n~q----~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l--~~ee~~~~~rl~~l~~~----~--~~l-~~Kq  379 (1200)
T KOG0964|consen  313 QDQITGNEQ----QRNLALHVLQKVKDKIEEKKDELSKIEPKYNSL--VDEEKRLKKRLAKLEQK----Q--RDL-LAKQ  379 (1200)
T ss_pred             HHHhhhhhh----hhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH--HhHHHHHHHHHHHHHHH----H--HHH-HHhh
Confidence            555543221    111122222333333333333333333332222  11122233334444321    0  000 0000


Q ss_pred             hhhhchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCC
Q 006469          397 DEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDD  476 (644)
Q Consensus       397 ~~~~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~  476 (644)
                      |. ..-.- .--+|.+=+.+++-.+..-+.+....-..++.++..++.++.+.-..+.+|+..|........        
T Consensus       380 gr-~sqFs-sk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~--------  449 (1200)
T KOG0964|consen  380 GR-YSQFS-SKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRME--------  449 (1200)
T ss_pred             cc-ccccC-cHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHH--------
Confidence            00 00000 124677788999999999999999999999999999999999999999999888764432111        


Q ss_pred             CccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469          477 WDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA  546 (644)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~  546 (644)
                                              .......-++..+|..-.+-.+|=.+-.+++..+..++..++.-+.
T Consensus       450 ------------------------~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~  495 (1200)
T KOG0964|consen  450 ------------------------EFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEK  495 (1200)
T ss_pred             ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                    2333344455555555555555555555555555555555554444

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.13  E-value=0.0035  Score=74.38  Aligned_cols=105  Identities=19%  Similarity=0.241  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcchhHHHH
Q 006469          429 TSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLKV  508 (644)
Q Consensus       429 ~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~I  508 (644)
                      ..++..|+.++..++.++..++..+..||..|...+-...     ++.      ..+.+..-       .+++.....-|
T Consensus       502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~-----~~~------~~trVL~l-------r~NP~~~~~~~  563 (722)
T PF05557_consen  502 SEELNELQKEIEELERENERLRQELEELESELEKLTLQGE-----FNP------SKTRVLHL-------RDNPTSKAEQI  563 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT-------BT------TTEEEEEE-------SS-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-----cCC------CCceeeee-------CCCcHHHHHHH
Confidence            4567778888888888888888888888888886431000     000      01111110       01234455566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHhhhhhHhh
Q 006469          509 ICNQRDRFRARLRETEEEVRQ-------------------LKEKIGVLTAELEKTKADNVQL  551 (644)
Q Consensus       509 vt~QRDRfr~rn~ELE~el~~-------------------~~~~i~~lr~E~~~Lk~DN~kL  551 (644)
                      -.+..+.++..|..|...++.                   ....+..|+.++.++.+-|..|
T Consensus       564 k~~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RL  625 (722)
T PF05557_consen  564 KKSTLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRL  625 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            778888888888888887732                   2345677888888888744433

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PRK11637 AmiB activator; Provisional

Probab=97.11  E-value=0.22  Score=55.48  Aligned_cols=15  Identities=13%  Similarity=0.242  Sum_probs=5.7

Q ss_pred             HHHHHHHHHHHHHHh
Q 006469          346 IEKEAALEDMKKELQ  360 (644)
Q Consensus       346 ~~~~~~~~~L~~~l~  360 (644)
                      ......+..++..+.
T Consensus       106 ~~l~~eI~~~q~~l~  120 (428)
T PRK11637        106 DELNASIAKLEQQQA  120 (428)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333444333

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=97.10  E-value=0.33  Score=47.63  Aligned_cols=123  Identities=16%  Similarity=0.328  Sum_probs=73.7

Q ss_pred             hHhhHhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          136 ESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLR  215 (644)
Q Consensus       136 e~e~~~Lk~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~~~~~erE~~L~~ql~  215 (644)
                      +.++..|++.+.-++.++..+.-.+.+   +.+++.++++...+.        +...        ..+..+-..+..++.
T Consensus         3 e~~va~lnrri~~leeele~aqErl~~---a~~KL~Eaeq~~dE~--------er~~--------Kv~enr~~kdEE~~e   63 (205)
T KOG1003|consen    3 EADVAALNRRIQLLEEELDRAQERLAT---ALQKLEEAEQAADES--------ERGM--------KVIENRAQKLEEKME   63 (205)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhcccHH--------HHHH--------HHHHHHHHhhHHHHH
Confidence            446777777777777777776544444   445555554433111        1111        111222233444555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 006469          216 QAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA  288 (644)
Q Consensus       216 ~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~  288 (644)
                      .++.++++.+.--+       +...+|++-    .--|-|+..|||++..|+...+....+|-+++....++.
T Consensus        64 ~~e~qLkEAk~iaE-------~adrK~eEV----arkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nl  125 (205)
T KOG1003|consen   64 AQEAQLKEAKHIAE-------KADRKYEEV----ARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNL  125 (205)
T ss_pred             HHHHHHHHHHHHHH-------HHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Confidence            55555555443333       333344322    234689999999999999999999999999998876665

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=97.06  E-value=0.91  Score=52.04  Aligned_cols=186  Identities=14%  Similarity=0.150  Sum_probs=98.7

Q ss_pred             HHHHHhhhhhhhHHHHHHHhhhhhcCCCChHHHHHHHHHHHhh--hhhhHhhHhHHHHHHHHHHHHhHhhhhHH-HHHHH
Q 006469           90 EVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKL--SELESENRKMKIELEEYRTEATHLKNQQS-TIRRL  166 (644)
Q Consensus        90 EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~--~~le~e~~~Lk~el~~l~~e~a~lk~q~~-~~~~L  166 (644)
                      -||.|-.|.-.-+.+|=++|+.|--+-    .|.  .+. ++.  +.+-..+..||..+..-+...+.-..+.. +|+.|
T Consensus       545 ~~~~le~~~~a~qat~d~a~~Dlqk~n----rlk--Qde-ar~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~L  617 (961)
T KOG4673|consen  545 LAAALEAQALAEQATNDEARSDLQKEN----RLK--QDE-ARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDL  617 (961)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhHHHHh----hhh--hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            477777777777888888887442110    111  000 000  01112233333333322222222111111 45555


Q ss_pred             HHHHHHHHHHHHHhHHH-------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006469          167 EERNRQLEQQMEEKVKE-------IVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVR  239 (644)
Q Consensus       167 ke~~~~le~~~e~~~~~-------~v~~ke~el~~~~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~  239 (644)
                      ..|+...|..-++.++.       -+-.. ..|++.+...-..|+.-|+.|..+|..-+-.+..+.-.--..-.+|+..+
T Consensus       618 qrRlqaaE~R~eel~q~v~~TTrPLlRQI-E~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v~~eqgekqElL~~~  696 (961)
T KOG4673|consen  618 QRRLQAAERRCEELIQQVPETTRPLLRQI-EALQETLSKAATAWEREERSLNERLSDSQTLLRINVLEEQGEKQELLSLN  696 (961)
T ss_pred             HHHHHHHHHHHHHHHhhccccccHHHHHH-HHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHHHHHHHh
Confidence            55555555555444431       12111 23566777777889888999999888666555544333322333566676


Q ss_pred             hcchHH---HHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469          240 AQSDEE---RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQS  283 (644)
Q Consensus       240 ~k~~~~---~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~  283 (644)
                      +.....   ..-..+|-.-+..-++.+..|+...+.++-.+..++..
T Consensus       697 ~~l~s~~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~  743 (961)
T KOG4673|consen  697 FSLPSSPIQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADT  743 (961)
T ss_pred             cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            665433   22334666677777777777877777777777666543

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=96.97  E-value=1.6  Score=53.32  Aligned_cols=40  Identities=18%  Similarity=0.207  Sum_probs=24.5

Q ss_pred             HHHHhHHhhcCCcHHHHHhhH---HHHHHhHHHHHHHhhhhhhhH
Q 006469           61 LAESTRDFKKASPEEKLSLFN---SLLKGYQEEVDNLTKRAKFGE  102 (644)
Q Consensus        61 La~~Tk~Fkk~~~~ekl~~~~---~LLK~yQ~EID~LTkRsK~aE  102 (644)
                      |...+++-+++.  ++...++   .+.|-++..|-.|+.+-...-
T Consensus       443 l~~~~~~~~~~~--~~~~~~~~~~~~~keL~e~i~~lk~~~~el~  485 (1317)
T KOG0612|consen  443 LVNEMQEKEKLD--EKCQAVAELEEMDKELEETIEKLKSEESELQ  485 (1317)
T ss_pred             hhhHHHHhhhHH--HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555433  3444444   678888988888877655443

>PRK11637 AmiB activator; Provisional

Probab=96.86  E-value=1.1  Score=49.89  Aligned_cols=43  Identities=26%  Similarity=0.360  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          418 LTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDI  460 (644)
Q Consensus       418 Lt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL  460 (644)
                      ...+..+..++...+..++.+...+.....+.+.++.+|+.++
T Consensus       186 k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~  228 (428)
T PRK11637        186 KAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSL  228 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333334444444444444444444444444433

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=96.75  E-value=2.2  Score=51.67  Aligned_cols=116  Identities=13%  Similarity=0.123  Sum_probs=60.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccC
Q 006469          415 EHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKK  494 (644)
Q Consensus       415 ~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (644)
                      .+.-..+..+.++....|+..+......+.-++.....+.--.++|..+++...                          
T Consensus      1555 ~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~-------------------------- 1608 (1758)
T KOG0994|consen 1555 RSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETA-------------------------- 1608 (1758)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--------------------------
Confidence            333334444444444444444444444555566666666666777777765432                          


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhhhccc
Q 006469          495 HTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYN  562 (644)
Q Consensus       495 ~~~~~~~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkirylqsy~  562 (644)
                            .....+.-.+.|...|..++.+|..+..+.-.........+.+.+.--+.--.+.+-||+|.
T Consensus      1609 ------~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~ 1670 (1758)
T KOG0994|consen 1609 ------AAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYY 1670 (1758)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  23334455566777777777777776665544444333333333332222222444555554

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.68  E-value=2.3  Score=50.97  Aligned_cols=258  Identities=16%  Similarity=0.251  Sum_probs=117.4

Q ss_pred             hHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          141 KMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAE-ENQKTLEILQEREQALQDQLRQAKD  219 (644)
Q Consensus       141 ~Lk~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~-~~~ek~~~~~erE~~L~~ql~~ae~  219 (644)
                      ..+.++...+.+++++..+..++.....+.+.+.++++-......- .+..+.. .+..    ..+.-..+.+.+...+.
T Consensus       681 ~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l-~~~r~~~~e~~~----~~~~~~~~~e~v~e~~~  755 (1174)
T KOG0933|consen  681 QAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELAL-LEKRLEQNEFHK----LLDDLKELLEEVEESEQ  755 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcChHhh----HHHHHHHHHHHHHHHHH
Confidence            3445666667777777777777777777777777766544432221 1111111 1100    01111223333444444


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCc
Q 006469          220 SVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERA-QTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDS  298 (644)
Q Consensus       220 ~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra-~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~  298 (644)
                      +|++....+...+..+-.+...               +.|...- ..|+.+++++...+...+++....           
T Consensus       756 ~Ike~~~~~k~~~~~i~~lE~~---------------~~d~~~~re~rlkdl~keik~~k~~~e~~~~~-----------  809 (1174)
T KOG0933|consen  756 QIKEKERALKKCEDKISTLEKK---------------MKDAKANRERRLKDLEKEIKTAKQRAEESSKE-----------  809 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---------------HhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence            4444444333333222111111               1111110 224555555555555554442222           


Q ss_pred             hhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 006469          299 NSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKIL  378 (644)
Q Consensus       299 ~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iL  378 (644)
                             +.-++.++..|.-|...|...+    ..+..+...+..++..+..++..+...+.+.  ..|.+..-.+|...
T Consensus       810 -------~ek~~~e~e~l~lE~e~l~~e~----~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~--~~~~~~~~~el~~~  876 (1174)
T KOG0933|consen  810 -------LEKRENEYERLQLEHEELEKEI----SSLKQQLEQLEKQISSLKSELGNLEAKVDKV--EKDVKKAQAELKDQ  876 (1174)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HhHHHHHHHHHHHH
Confidence                   1222333444444444444333    3334444555555666666667777776665  46677777777666


Q ss_pred             HhcccCCcccchhhhhcchhhhchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          379 QAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLE  457 (644)
Q Consensus       379 k~IEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE  457 (644)
                      +.. +-  +.|. .          +. .++..-.++..+..........+..++..++.+-.....++..+.+.+.-|.
T Consensus       877 k~k-~~--~~dt-~----------i~-~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~  940 (1174)
T KOG0933|consen  877 KAK-QR--DIDT-E----------IS-GLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIG  940 (1174)
T ss_pred             HHH-HH--hhhH-H----------Hh-hhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchh
Confidence            654 11  1110 0          00 1222333344444444455555555555555555555555555444444444

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=96.63  E-value=1.3  Score=47.56  Aligned_cols=37  Identities=30%  Similarity=0.413  Sum_probs=32.3

Q ss_pred             HHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhhcCCCC
Q 006469           82 SLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDP  118 (644)
Q Consensus        82 ~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP  118 (644)
                      |+|-.||.=+--|.++=..+-..|=++=...+.-|-|
T Consensus        68 P~Lely~~~c~EL~~~I~egr~~~~~~E~~~~~~nPp  104 (325)
T PF08317_consen   68 PMLELYQFSCRELKKYISEGRQIFEEIEEETYESNPP  104 (325)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Confidence            8999999999999999999999999988888776633

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=96.62  E-value=0.0005  Score=81.35  Aligned_cols=64  Identities=19%  Similarity=0.266  Sum_probs=0.0

Q ss_pred             chhHHHHHHHhhhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006469          401 SKMESLLLDKNRKMEHELT-------QLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY  464 (644)
Q Consensus       401 ~~LE~lLl~kNrkL~~eLt-------~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~  464 (644)
                      ..|+..|..|...+...-.       ..+.-+..+..++.....++..+...+.+....|..||.++....
T Consensus       579 ~~Le~~L~~k~~e~~~~eer~k~~lekak~vi~~Ld~k~~~~~~e~~~L~~ql~e~~~~i~~lE~~~e~~k  649 (713)
T PF05622_consen  579 EELEEALQKKEEEMRAMEERYKKYLEKAKEVIKTLDPKQNPSSPEIQALKKQLQEKDRRIESLEKELEKSK  649 (713)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             HHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHhhccChhccCChHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            3445445555444433323       334444555555555556677777888888888888888887665

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PRK01156 chromosome segregation protein; Provisional

Probab=96.61  E-value=2.9  Score=51.15  Aligned_cols=38  Identities=21%  Similarity=0.270  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          506 LKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEK  543 (644)
Q Consensus       506 L~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~  543 (644)
                      +.-+..+++.++..+.+++.++.....++..++.++..
T Consensus       683 ~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~  720 (895)
T PRK01156        683 LKKSRKALDDAKANRARLESTIEILRTRINELSDRIND  720 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            33444445555555555555555444444444444433

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=96.58  E-value=2.2  Score=49.49  Aligned_cols=30  Identities=13%  Similarity=0.163  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchHHH
Q 006469          217 AKDSVATMQKLHELAQSQLFEVRAQSDEER  246 (644)
Q Consensus       217 ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~  246 (644)
                      -...+..++..|...+..|...+..|+...
T Consensus       138 nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~  167 (569)
T PRK04778        138 NREEVEQLKDLYRELRKSLLANRFSFGPAL  167 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCccccchH
Confidence            344556666666666666666666666553

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=96.49  E-value=2.7  Score=49.51  Aligned_cols=36  Identities=25%  Similarity=0.345  Sum_probs=18.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          413 KMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINE  448 (644)
Q Consensus       413 kL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~  448 (644)
                      .++.++..+...+..+..++..+..++..++.++..
T Consensus       432 ~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  467 (650)
T TIGR03185       432 EAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDE  467 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555555555555555444

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF13514 AAA_27: AAA domain

Probab=96.45  E-value=4.1  Score=51.11  Aligned_cols=194  Identities=18%  Similarity=0.198  Sum_probs=90.9

Q ss_pred             hhHHHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhhcCCCChHHHHHHHHHHHhhhhh---hHhhHhHHHHHHHHHHHHhH
Q 006469           79 LFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSEL---ESENRKMKIELEEYRTEATH  155 (644)
Q Consensus        79 ~~~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~l---e~e~~~Lk~el~~l~~e~a~  155 (644)
                      .....+..-+..+..+..........+-.+...+. .|+| |  ....+++.+.+.+   -.+....+.++..+....+.
T Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~g-~p~~-p--~~~~~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  636 (1111)
T PF13514_consen  561 EARARLARAQARLAAAEAALAALEAAWAALWAAAG-LPLS-P--AEMRDWLARREAALEAAEELRAARAELEALRARRAA  636 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCC-h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344555566677777777777788888888887 7765 4  5556665544311   11222222222222222222


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          156 LKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQL  235 (644)
Q Consensus       156 lk~q~~~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L  235 (644)
                      +.      ..|...+..+..  ...+...+...+. +-+.+.    ....+-..++.++..++..+..++..+...+..+
T Consensus       637 ~~------~~L~~~l~~~~~--~~~l~~~l~~a~~-~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  703 (1111)
T PF13514_consen  637 AR------AALAAALAALGP--AEELAALLEEAEA-LLEEWE----QAAARREQLEEELQQLEQELEEAEAELQEAQEAL  703 (1111)
T ss_pred             HH------HHHHHHHHhCCc--cccHHHHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11      111111111111  1111222211111 111111    1112223445555555555666666665566555


Q ss_pred             HHhhhcchHH--------------HH---hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 006469          236 FEVRAQSDEE--------------RV---AKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAG  289 (644)
Q Consensus       236 ~~~~~k~~~~--------------~~---a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~  289 (644)
                      ..|......-              ..   ....++.-....+.....|+..+++....+..++...-....
T Consensus       704 ~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~  774 (1111)
T PF13514_consen  704 EEWQEEWQEALAELGLPADASPEEALEALELLEELREALAEIRELRRRIEQMEADLAAFEEQVAALAERLG  774 (1111)
T ss_pred             HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            5555443311              11   112344444455566667777777777777777776665543

>PRK11281 hypothetical protein; Provisional

Probab=96.43  E-value=4  Score=50.77  Aligned_cols=26  Identities=19%  Similarity=0.409  Sum_probs=17.7

Q ss_pred             HHHHHHhcCCChhhHHHHHHHHHHHH
Q 006469          354 DMKKELQARPTSKMVDDLRKKVKILQ  379 (644)
Q Consensus       354 ~L~~~l~~~~~~sDYeeiKrEL~iLk  379 (644)
                      -|..+++++|+..-++.+-.++.-++
T Consensus       341 ~l~~q~~~LP~~~~~~~l~~~iAdlr  366 (1113)
T PRK11281        341 ILYQQQQALPSADLIEGLADRIADLR  366 (1113)
T ss_pred             HHHHHHHhCCCCcccchHHHHHHHHH
Confidence            56677788887776666666666554

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=96.42  E-value=0.34  Score=45.14  Aligned_cols=69  Identities=22%  Similarity=0.388  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006469          209 ALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSA  284 (644)
Q Consensus       209 ~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a  284 (644)
                      .+..++..++..+..|+...+.+...|       +....++..+-.++..++..+..|+.+|...|.-|..+|...
T Consensus        63 ~lr~e~~~~~~~~~~l~~~~~~a~~~l-------~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l  131 (132)
T PF07926_consen   63 QLREELQELQQEINELKAEAESAKAEL-------EESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL  131 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            344455555556666665555555444       444556778889999999999999999999999999999764

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=96.41  E-value=4  Score=50.64  Aligned_cols=82  Identities=16%  Similarity=0.204  Sum_probs=47.4

Q ss_pred             HHHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhhcCCCChHHHHHHHHHHHhhhhhhHhhHhHHHHHHHHHHHHhHhhhhH
Q 006469           81 NSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQ  160 (644)
Q Consensus        81 ~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~le~e~~~Lk~el~~l~~e~a~lk~q~  160 (644)
                      ..+++.....|++.-...+.++...=..|+..-..|--.|....-      ...++.+.+.++.++..+..++.++..++
T Consensus       690 ~ef~~~l~~~i~s~p~~~~~~~~~l~k~~k~~e~l~~~~~~~~~~------~~l~~~~i~e~~~~l~~~~~el~~~~~~~  763 (1294)
T KOG0962|consen  690 VEFIKKLESKIDSAPDKLEEAEVELSKEEKIFEILLKLKPTFGSI------IKLIDKEIPELEKELQEVYEELGDLSEEE  763 (1294)
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhhHHHHH------HHHHhhhhhHHHHHHHHHHHHHHhhhhhh
Confidence            455566666666666666666555555555522233233332211      12345667777788888888888888777


Q ss_pred             HHHHHHHH
Q 006469          161 STIRRLEE  168 (644)
Q Consensus       161 ~~~~~Lke  168 (644)
                      ++...+..
T Consensus       764 e~~~~~l~  771 (1294)
T KOG0962|consen  764 EDDEKLLD  771 (1294)
T ss_pred             hHHHHHhc
Confidence            76554443

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=96.39  E-value=1.7  Score=45.97  Aligned_cols=110  Identities=15%  Similarity=0.220  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCC-CCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          262 RAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDT-LDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKK  340 (644)
Q Consensus       262 ra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~-~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~  340 (644)
                      +-..|+..|+.++..|...|....++..++.... .....+....+   ...|..|.+++.+|...|..........+..
T Consensus       182 ~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~---~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~  258 (310)
T PF09755_consen  182 RLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERL---SSHIRSLRQEVSRLRQQLAASQQEHSEKMAQ  258 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567999999999999999998766533221110 00000111112   4459999999999999998877777777766


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q 006469          341 LNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVK  376 (644)
Q Consensus       341 L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~  376 (644)
                      .-.....+..+...|+..|+.-  ...-+.+.|.|.
T Consensus       259 ~~~eek~ireEN~rLqr~L~~E--~erreal~R~ls  292 (310)
T PF09755_consen  259 YLQEEKEIREENRRLQRKLQRE--VERREALCRHLS  292 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence            6666677777777787777752  233444444443

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=96.36  E-value=2.8  Score=48.23  Aligned_cols=65  Identities=23%  Similarity=0.303  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          254 NLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQ  333 (644)
Q Consensus       254 eml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~  333 (644)
                      +|++.+.+..+.|+..+|+|++.|-.++-..                            ..-|.-++..|+++|......
T Consensus       608 d~~R~Ei~~LqrRlqaaE~R~eel~q~v~~T----------------------------TrPLlRQIE~lQ~tl~~~~ta  659 (961)
T KOG4673|consen  608 DMFRGEIEDLQRRLQAAERRCEELIQQVPET----------------------------TRPLLRQIEALQETLSKAATA  659 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----------------------------ccHHHHHHHHHHHHHhhhhhH
Confidence            5667777777778888888888877665221                            112334457788888877777


Q ss_pred             HHHHHHHHHHHHH
Q 006469          334 HMNEIKKLNALLI  346 (644)
Q Consensus       334 ~~~~~~~L~~~l~  346 (644)
                      +......|.+.|.
T Consensus       660 wereE~~l~~rL~  672 (961)
T KOG4673|consen  660 WEREERSLNERLS  672 (961)
T ss_pred             HHHHHHHHHHhhh
Confidence            7766655555554

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.23  E-value=3  Score=47.28  Aligned_cols=37  Identities=24%  Similarity=0.433  Sum_probs=27.0

Q ss_pred             HhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469          247 VAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQS  283 (644)
Q Consensus       247 ~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~  283 (644)
                      ....-.|+++..+++.-...+..+..+|..|+.++..
T Consensus       290 ~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~  326 (581)
T KOG0995|consen  290 QHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIEL  326 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444567777777777777777788888888887754

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=96.09  E-value=4.2  Score=47.63  Aligned_cols=43  Identities=21%  Similarity=0.178  Sum_probs=28.3

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          406 LLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINE  448 (644)
Q Consensus       406 lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~  448 (644)
                      -|..+|-.|..|+....-....++..++.++.-.+..-...++
T Consensus       274 qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseq  316 (1265)
T KOG0976|consen  274 QLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQ  316 (1265)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence            3666777777777777776677777777776666555444433

>PRK10698 phage shock protein PspA; Provisional

Probab=95.99  E-value=1.5  Score=44.62  Aligned_cols=41  Identities=17%  Similarity=0.165  Sum_probs=23.0

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHhhhhhhHhhHhHHHHHHHHHHHHhH
Q 006469          109 YQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATH  155 (644)
Q Consensus       109 Y~~L~eaPDP~PlLe~s~~~~~~~~~le~e~~~Lk~el~~l~~e~a~  155 (644)
                      ...|-.+-||.-.|...+.      ++++.+.+++..+...-..-..
T Consensus        16 n~~ldkaEDP~k~l~q~i~------em~~~l~~~r~alA~~~A~~k~   56 (222)
T PRK10698         16 NALLEKAEDPQKLVRLMIQ------EMEDTLVEVRSTSARALAEKKQ   56 (222)
T ss_pred             HHHHHhhcCHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence            3446667899988777555      3455555555554443333333

>TIGR02977 phageshock_pspA phage shock protein A

Probab=95.98  E-value=2.1  Score=43.31  Aligned_cols=40  Identities=18%  Similarity=0.193  Sum_probs=22.5

Q ss_pred             hhhhcCCCChHHHHHHHHHHHhhhhhhHhhHhHHHHHHHHHHHHhH
Q 006469          110 QKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATH  155 (644)
Q Consensus       110 ~~L~eaPDP~PlLe~s~~~~~~~~~le~e~~~Lk~el~~l~~e~a~  155 (644)
                      ..+-.+-||.-.|...+.      ++++.+.+.+..+...-..-..
T Consensus        17 ~~~dk~EDP~~~l~q~ir------em~~~l~~ar~~lA~~~a~~k~   56 (219)
T TIGR02977        17 ALLDKAEDPEKMIRLIIQ------EMEDTLVEVRTTSARTIADKKE   56 (219)
T ss_pred             HHHHhccCHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence            445567799888776554      3444555555555544333333

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=95.92  E-value=5.7  Score=47.78  Aligned_cols=214  Identities=21%  Similarity=0.247  Sum_probs=108.7

Q ss_pred             HHhhhhcCChhHHHhhHhHHHHHHHHhhHhhHHHHHHHHHHhHHhhc---CCcHHH------HHhhHHHHHH----hHHH
Q 006469           24 ISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKK---ASPEEK------LSLFNSLLKG----YQEE   90 (644)
Q Consensus        24 a~~~W~~~dl~~lq~~LD~~~~ei~~~q~~s~~sRK~La~~Tk~Fkk---~~~~ek------l~~~~~LLK~----yQ~E   90 (644)
                      ++-.|..+-++.  ++|+.+-+.|.+.+.++-+-| .+|+-|-+--+   ++.+++      +.-+.+|+|-    |-.=
T Consensus        50 ~llLg~avqcp~--kelfi~riq~ldlete~a~~~-~iaevtd~~~~vleld~~er~~~~q~~~hir~llk~r~~~~k~~  126 (1195)
T KOG4643|consen   50 QLLLGSAVQCPT--KELFIQRIQILDLETEMAQMR-TIAEVTDEECQVLELDNEERAQKIQILEHIRLLLKDRKKKWKSV  126 (1195)
T ss_pred             HHHHHhhhcCCc--HHHHHHHHHhhhhHHHHHHHH-HHHHhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            355788888874  789999999999999998888 77777654322   333333      3344556553    4455


Q ss_pred             HHHHhhhhhhh-HH--HHHHHhhhhhcCCCC-----hHHHHH---HHHHHHhhhhhhHhhHhHHHHHHHHHHHHhHhhhh
Q 006469           91 VDNLTKRAKFG-EN--AFLNIYQKLYEAPDP-----YPALAS---IAEQDLKLSELESENRKMKIELEEYRTEATHLKNQ  159 (644)
Q Consensus        91 ID~LTkRsK~a-E~--aFl~~Y~~L~eaPDP-----~PlLe~---s~~~~~~~~~le~e~~~Lk~el~~l~~e~a~lk~q  159 (644)
                      ||.+--.+-.. |.  -..++-+.+.+.||-     .|..-.   .....+.+..++.-+..|+.++++=-.-+-.+   
T Consensus       127 id~~qe~se~i~e~~le~vGl~~~~~~s~s~~~~~~sp~~~~~~~~~hL~velAdle~kir~LrqElEEK~enll~l---  203 (1195)
T KOG4643|consen  127 IDDLQEASEKIAEKLLELVGLEKKYRESRSGKELYKSPYDIVVKKNLHLEVELADLEKKIRTLRQELEEKFENLLRL---  203 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccceeeccccCCCCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            66554332211 11  133455566666653     222111   00011111233333333333333211111111   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHhhhHHHHHHHHHH----HHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 006469          160 QSTIRRLEERNRQLEQQMEEKVKEIV--EIKQRGLAEENQKTLEI----LQEREQ---ALQDQLRQAKDSVATMQKLHEL  230 (644)
Q Consensus       160 ~~~~~~Lke~~~~le~~~e~~~~~~v--~~ke~el~~~~~ek~~~----~~erE~---~L~~ql~~ae~~l~~L~~~~e~  230 (644)
                      ..+++-++.++..+.+...+-+..+-  ..--.++.+..+ +...    +.++-.   .+.++++++++.+.+|....+.
T Consensus       204 r~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre-~aer~d~~ykerlmDs~fykdRveelkedN~vLleekeM  282 (1195)
T KOG4643|consen  204 RNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALRE-QAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEM  282 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH-hhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence            12333344444444444433332111  111112222111 1111    233322   2578899999999999999999


Q ss_pred             HHHHHHHhhhcchH
Q 006469          231 AQSQLFEVRAQSDE  244 (644)
Q Consensus       231 ~Q~~L~~~~~k~~~  244 (644)
                      ...+|..++++.+.
T Consensus       283 LeeQLq~lrarse~  296 (1195)
T KOG4643|consen  283 LEEQLQKLRARSEG  296 (1195)
T ss_pred             HHHHHHHHHhcccc
Confidence            99999988887643

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=95.88  E-value=6.4  Score=47.99  Aligned_cols=60  Identities=18%  Similarity=0.184  Sum_probs=43.3

Q ss_pred             cCChhHHHhhHhHHHHHHHHhhHhhHHHHHHHHHHhHHhhcCCcHHHHHhhHHHHHHhHH
Q 006469           30 DFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQE   89 (644)
Q Consensus        30 ~~dl~~lq~~LD~~~~ei~~~q~~s~~sRK~La~~Tk~Fkk~~~~ekl~~~~~LLK~yQ~   89 (644)
                      +.+|+..+..++..+.++...|+++..=-+-+.+.--.|-|+...+.+..|+.+=++|+.
T Consensus      1252 E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~sdi~GA~~~~r~a~~~ 1311 (1758)
T KOG0994|consen 1252 EETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIKESDILGAFNSTRHAYEQ 1311 (1758)
T ss_pred             hhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHH
Confidence            456777777788888888888887665544445555555566666788888888888875

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.88  E-value=0.33  Score=52.22  Aligned_cols=127  Identities=20%  Similarity=0.207  Sum_probs=68.1

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006469          251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNE  330 (644)
Q Consensus       251 aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~  330 (644)
                      .+...|...++.++.-+-.+..+...|..++...+.............-..+..+|.....+|..+..++..++..+.. 
T Consensus       163 ~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~-  241 (325)
T PF08317_consen  163 EDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEE-  241 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            3344444445555555555555555555555554443321100000011123334444444444444444444444433 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHHHhc
Q 006469          331 REQHMNEIKKLNALLIEKEAALEDMKKELQAR--PTSKMVDDLRKKVKILQAV  381 (644)
Q Consensus       331 r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~--~~~sDYeeiKrEL~iLk~I  381 (644)
                         +...+..+..+......++.+++..++..  .+..+...||.++..|+.+
T Consensus       242 ---l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~  291 (325)
T PF08317_consen  242 ---LEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKL  291 (325)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence               33345566666667777777777777644  4677999999999999976

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=95.77  E-value=1.4  Score=52.81  Aligned_cols=36  Identities=19%  Similarity=0.277  Sum_probs=31.0

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469          250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN  285 (644)
Q Consensus       250 ~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~  285 (644)
                      ..++.-+...|..++.+...++.+...++..+....
T Consensus       236 ~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~  271 (754)
T TIGR01005       236 TQQLAELNTELSRARANRAAAEGTADSVKKALQNGG  271 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            367888889999999999999999999999987643

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=95.76  E-value=2.5  Score=42.47  Aligned_cols=184  Identities=19%  Similarity=0.289  Sum_probs=89.1

Q ss_pred             HhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 006469          140 RKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEI-LQEREQALQDQLRQAK  218 (644)
Q Consensus       140 ~~Lk~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~~~-~~erE~~L~~ql~~ae  218 (644)
                      ..++.++...+.+...|+.++.....--.++..+=..++.++...+.+.+.... .....+.. ..++ ..+...|..++
T Consensus        12 ~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~-~~~~~i~~~~~er-dq~~~dL~s~E   89 (207)
T PF05010_consen   12 KKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKE-LSEAEIQKLLKER-DQAYADLNSLE   89 (207)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHH-hHHHHHHHHHhhH-HHHHHHHHHHH
Confidence            334444443334444444433332222223333334444455555544443321 11222222 2222 34566788888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCc
Q 006469          219 DSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDS  298 (644)
Q Consensus       219 ~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~  298 (644)
                      ....+|+..|+....-+.+++...           +.+..-++....|+...+.|...|+.-.+.               
T Consensus        90 ~sfsdl~~ryek~K~vi~~~k~NE-----------E~Lkk~~~ey~~~l~~~eqry~aLK~hAee---------------  143 (207)
T PF05010_consen   90 KSFSDLHKRYEKQKEVIEGYKKNE-----------ETLKKCIEEYEERLKKEEQRYQALKAHAEE---------------  143 (207)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence            888999999887766666665421           233344555556777777777777755332               


Q ss_pred             hhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          299 NSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKK  357 (644)
Q Consensus       299 ~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~  357 (644)
                        .|+.-....+...+...+++..|++.|....    -.+..|+.+|..+..++++|..
T Consensus       144 --kL~~ANeei~~v~~~~~~e~~aLqa~lkk~e----~~~~SLe~~LeQK~kEn~ELtk  196 (207)
T PF05010_consen  144 --KLEKANEEIAQVRSKHQAELLALQASLKKEE----MKVQSLEESLEQKTKENEELTK  196 (207)
T ss_pred             --HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence              1111111123334445555666666664332    2234455555555444444433

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=95.76  E-value=5.7  Score=46.56  Aligned_cols=38  Identities=24%  Similarity=0.172  Sum_probs=30.7

Q ss_pred             HHHhhHHHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhh
Q 006469           76 KLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLY  113 (644)
Q Consensus        76 kl~~~~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~  113 (644)
                      +......|+--||.+|+.++.+++.-..-|...|+.+.
T Consensus       312 ~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (698)
T KOG0978|consen  312 KSRDLESLLDKIQDLISQEAELSKKLRSKLLESAKKLK  349 (698)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556677888999999999999977888888777766

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=95.76  E-value=2.4  Score=42.22  Aligned_cols=179  Identities=18%  Similarity=0.312  Sum_probs=110.2

Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 006469          249 KQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALS  328 (644)
Q Consensus       249 ~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~  328 (644)
                      ..-.+.-+..++.-++.++.++..+|..|+.--..-....+ .   ..    ..++++   ...|.....|++.|...|.
T Consensus        10 r~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~-k---~e----~~e~~L---pqll~~h~eEvr~Lr~~LR   78 (194)
T PF15619_consen   10 RLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQ-K---YE----DTEAEL---PQLLQRHNEEVRVLRERLR   78 (194)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HH----hhhhhH---HHHHHHHHHHHHHHHHHHH
Confidence            34455566667777777888888888887754222111110 0   00    111222   3336667777777776666


Q ss_pred             HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhcccCCcccchhhhhcchhhhchhHH
Q 006469          329 NEREQ---HMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMES  405 (644)
Q Consensus       329 ~~r~~---~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf~~~d~~~~~~a~~~~~~~~LE~  405 (644)
                      .....   ....+.+.+.++......+..|+...... +-.+-+++-++|+.+...    .++       .......|+.
T Consensus        79 ~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dk-nL~eReeL~~kL~~~~~~----l~~-------~~~ki~~Lek  146 (194)
T PF15619_consen   79 KSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDK-NLAEREELQRKLSQLEQK----LQE-------KEKKIQELEK  146 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CchhHHHHHHHHHHHHHH----HHH-------HHHHHHHHHH
Confidence            55444   33334555555555556666666655532 235789999999999854    221       1123456777


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          406 LLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQ  450 (644)
Q Consensus       406 lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~  450 (644)
                      -|---|+.+..++......+.++...+..++.++..+.+.+.+-.
T Consensus       147 ~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKe  191 (194)
T PF15619_consen  147 QLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKE  191 (194)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            777778888888888888888888888888888888877776543

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=95.70  E-value=0.0028  Score=75.11  Aligned_cols=44  Identities=30%  Similarity=0.314  Sum_probs=0.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469          503 SSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA  546 (644)
Q Consensus       503 ~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~  546 (644)
                      .+-++.+..+.+....++..|+.+.+...+++..++.+++.++.
T Consensus       480 ~e~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~  523 (713)
T PF05622_consen  480 EEKLEELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQK  523 (713)
T ss_dssp             --------------------------------------------
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556677888888888888888888888888888877776665

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.60  E-value=5.3  Score=45.03  Aligned_cols=61  Identities=13%  Similarity=0.253  Sum_probs=49.0

Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006469          404 ESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY  464 (644)
Q Consensus       404 E~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~  464 (644)
                      --+.+.--.+|+.+|-........+..-+...+..+......+.++..-+..|-.++..+.
T Consensus       313 sel~iseiqkLkqqL~smErek~~l~anL~dtqt~le~T~~~l~~~~er~~~l~e~v~al~  373 (772)
T KOG0999|consen  313 SELNISEIQKLKQQLMSMEREKAELLANLQDTQTQLEHTEGDLMEQRERVDRLTEHVQALR  373 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence            3346666778888888888888888888888888888888888888888888877776665

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=95.52  E-value=7.3  Score=46.09  Aligned_cols=31  Identities=29%  Similarity=0.202  Sum_probs=20.7

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006469          407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEG  437 (644)
Q Consensus       407 Ll~kNrkL~~eLt~lR~~~~~l~~~l~~l~~  437 (644)
                      |..|-+....++..++..+..+..++..++.
T Consensus       357 Le~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~  387 (717)
T PF09730_consen  357 LECKYKVAVSEVIQLKAELKALKSKYNELEE  387 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666666777777777666666666666655

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=95.48  E-value=2.9  Score=41.24  Aligned_cols=129  Identities=16%  Similarity=0.191  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhcccCCcccc
Q 006469          310 EKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAE  389 (644)
Q Consensus       310 e~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf~~~d~~  389 (644)
                      +.-=..|..++..|+.++...-+    ..++|...+..+......++..++      -|.-|+.||.-||..-... +  
T Consensus        14 ~~~n~~L~~en~kL~~~ve~~ee----~na~L~~e~~~L~~q~~s~Qqal~------~aK~l~eEledLk~~~~~l-E--   80 (193)
T PF14662_consen   14 QLNNQKLADENAKLQRSVETAEE----GNAQLAEEITDLRKQLKSLQQALQ------KAKALEEELEDLKTLAKSL-E--   80 (193)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH-H--
Confidence            33344566666666666543322    223344333444344444443333      4677777777777431100 0  


Q ss_pred             hhhhhcchhhhchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006469          390 DWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKG  463 (644)
Q Consensus       390 ~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~  463 (644)
                              ..    =.-|+..+|.++.+...|-..+..|+.+...+..+...+.....++-..+..|-..|-.+
T Consensus        81 --------E~----~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~  142 (193)
T PF14662_consen   81 --------EE----NRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEF  142 (193)
T ss_pred             --------HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence                    00    012666777777777777777777777776666666666666666666555555555333

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=95.43  E-value=3.2  Score=41.38  Aligned_cols=89  Identities=17%  Similarity=0.217  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          196 NQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKD  275 (644)
Q Consensus       196 ~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene  275 (644)
                      +.+.+++|.++-+..+.+...+++++++....+-.++..+..+..-.   .....+|.+-+..-|+.++.++...++++.
T Consensus        66 h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~---~dknL~eReeL~~kL~~~~~~l~~~~~ki~  142 (194)
T PF15619_consen   66 HNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLS---EDKNLAEREELQRKLSQLEQKLQEKEKKIQ  142 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555555555554444444444332210   112346677778888888888888888888


Q ss_pred             HHHHHHHhhhhh
Q 006469          276 LLRSQLQSANDE  287 (644)
Q Consensus       276 ~Lr~eL~~a~s~  287 (644)
                      .|..++.-+.+.
T Consensus       143 ~Lek~leL~~k~  154 (194)
T PF15619_consen  143 ELEKQLELENKS  154 (194)
T ss_pred             HHHHHHHHHhhH
Confidence            888777665444

>PRK09039 hypothetical protein; Validated

Probab=95.23  E-value=2.6  Score=45.73  Aligned_cols=21  Identities=14%  Similarity=0.186  Sum_probs=12.3

Q ss_pred             hhHhhHhHHHHHHHHHHHHhH
Q 006469          135 LESENRKMKIELEEYRTEATH  155 (644)
Q Consensus       135 le~e~~~Lk~el~~l~~e~a~  155 (644)
                      |..++..+..++++++.+++.
T Consensus        44 Ls~~i~~~~~eL~~L~~qIa~   64 (343)
T PRK09039         44 LSREISGKDSALDRLNSQIAE   64 (343)
T ss_pred             HHHHHhhHHHHHHHHHHHHHH
Confidence            445566666666666655555

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=95.22  E-value=3.8  Score=41.05  Aligned_cols=149  Identities=21%  Similarity=0.260  Sum_probs=90.7

Q ss_pred             HHHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhhcCCCChHHHHHHHHHHHhhhhhhHhhHhHHHHHHHHHHHHhHhhhhH
Q 006469           81 NSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQ  160 (644)
Q Consensus        81 ~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~le~e~~~Lk~el~~l~~e~a~lk~q~  160 (644)
                      -.|||+.-.+|..+-++....+..+..+-.--...-.|-             ..++.++..|+..+..|......+++-.
T Consensus        26 L~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL-------------~~a~~e~~eL~k~L~~y~kdK~~L~~~k   92 (201)
T PF13851_consen   26 LELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPL-------------KKAEEEVEELRKQLKNYEKDKQSLQNLK   92 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357888888999888888877777665544322222221             1234566777777777777666666655


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469          161 STIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRA  240 (644)
Q Consensus       161 ~~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~  240 (644)
                      ..+..++.++..|+-..+... .++...+.+...-+..-.....+-++-..-+.--+++++..|...++....+|.+.-.
T Consensus        93 ~rl~~~ek~l~~Lk~e~evL~-qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~  171 (201)
T PF13851_consen   93 ARLKELEKELKDLKWEHEVLE-QRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLA  171 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555556666666655543332 3343444444433333333333333334445556899999999999999999987755


Q ss_pred             cch
Q 006469          241 QSD  243 (644)
Q Consensus       241 k~~  243 (644)
                      ..+
T Consensus       172 ~~n  174 (201)
T PF13851_consen  172 AAN  174 (201)
T ss_pred             HcC
Confidence            433

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=95.05  E-value=9.2  Score=44.55  Aligned_cols=95  Identities=22%  Similarity=0.335  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 006469          214 LRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNS  293 (644)
Q Consensus       214 l~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~  293 (644)
                      |..++..+..|+.-.+.+...+..+..+-+..+.-..+|+..+..-...-.......-.+...+|.++.           
T Consensus       389 L~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k-----------  457 (594)
T PF05667_consen  389 LPDAEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIK-----------  457 (594)
T ss_pred             hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH-----------
Confidence            444566666666666666666666655555444444455444443211111111112223333333332           


Q ss_pred             CCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHH
Q 006469          294 DTLDSNSYLENSLSAKEKIISELNSELHNIETA  326 (644)
Q Consensus       294 ~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~  326 (644)
                             .+..++..|+..+.+|..++..+-..
T Consensus       458 -------~~~~e~~~Kee~~~qL~~e~e~~~k~  483 (594)
T PF05667_consen  458 -------EIEEEIRQKEELYKQLVKELEKLPKD  483 (594)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence                   34455666777777777777766544

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.03  E-value=9.7  Score=44.70  Aligned_cols=108  Identities=25%  Similarity=0.335  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhhcCCCCCCCCCc-hhhhHhhhhhhHHHHHHHHHHHHHHHH
Q 006469          254 NLLMDEVERAQTRLLSLQREKDLLR-------SQLQSANDEAGSRNSDTLDS-NSYLENSLSAKEKIISELNSELHNIET  325 (644)
Q Consensus       254 eml~~dLEra~~R~~~lE~ene~Lr-------~eL~~a~s~~~~~~~~~~~~-~s~le~el~~ke~~i~~L~~e~~~L~~  325 (644)
                      ++.+.+..--++|+.+++..+-.|-       .+|-+..+....     .+. -+.|+..+..|+..+.++...+..|. 
T Consensus       482 e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~-----~~~~~s~L~aa~~~ke~irq~ikdqldels-  555 (1118)
T KOG1029|consen  482 ELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKE-----TTQRKSELEAARRKKELIRQAIKDQLDELS-  555 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccC-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            4444555556666666666555443       333332222211     122 34566667777777777776665544 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh-hHHHHH
Q 006469          326 ALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSK-MVDDLR  372 (644)
Q Consensus       326 ~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~s-DYeeiK  372 (644)
                         .+.++.-+++.-+..++.++...+......++..  |. .|+-+|
T Consensus       556 ---kE~esk~~eidi~n~qlkelk~~~~~q~lake~~--yk~e~d~~k  598 (1118)
T KOG1029|consen  556 ---KETESKLNEIDIFNNQLKELKEDVNSQQLAKEEL--YKNERDKLK  598 (1118)
T ss_pred             ---HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence               3445555666667777777666666555555543  22 566555

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=94.91  E-value=10  Score=44.24  Aligned_cols=39  Identities=18%  Similarity=0.287  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006469          426 SEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY  464 (644)
Q Consensus       426 ~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~  464 (644)
                      ...-.++..+...+..+..++..-..++.+|..+++.+.
T Consensus       443 ~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~  481 (594)
T PF05667_consen  443 KQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLP  481 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            334455556666666677777777778888888877664

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=94.90  E-value=14  Score=45.98  Aligned_cols=23  Identities=9%  Similarity=0.228  Sum_probs=12.3

Q ss_pred             HHHHHHhcCCChhhHHHHHHHHH
Q 006469          354 DMKKELQARPTSKMVDDLRKKVK  376 (644)
Q Consensus       354 ~L~~~l~~~~~~sDYeeiKrEL~  376 (644)
                      -|..+++++|+..-|..+-.++.
T Consensus       321 ~L~~Q~~~LP~~~~~~~l~~~IA  343 (1109)
T PRK10929        321 ALRAQVARLPEMPKPQQLDTEMA  343 (1109)
T ss_pred             HHHHHHHhCCCCcccchhHHHHH
Confidence            45566666666554444444433

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=94.85  E-value=5.6  Score=47.23  Aligned_cols=151  Identities=19%  Similarity=0.264  Sum_probs=106.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhcccCCc
Q 006469          307 SAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSI  386 (644)
Q Consensus       307 ~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf~~~  386 (644)
                      .+.+..|.++..+++.+.+.+..........+.+++.++....-+.++-+...+..  ..|-+.|+.|+.-|..---.  
T Consensus       329 d~~~~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~--~~e~eqLr~elaql~a~r~q--  404 (980)
T KOG0980|consen  329 DPRELQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQEN--REEQEQLRNELAQLLASRTQ--  404 (980)
T ss_pred             ChhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHH--
Confidence            56677888999999888888887777776777888888888777777766666654  57888999998888743111  


Q ss_pred             ccchhhhhcchhhhchhHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006469          387 EAEDWEVATNDEEMSKMESLLLDKNR--KMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY  464 (644)
Q Consensus       387 d~~~~~~a~~~~~~~~LE~lLl~kNr--kL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~  464 (644)
                       .+.   + .+.-...--..|...||  ++-..++.++..|.++-.++.+.+++++.....+.+....+..|..-|+.++
T Consensus       405 -~ek---a-~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~  479 (980)
T KOG0980|consen  405 -LEK---A-QVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQ  479 (980)
T ss_pred             -HHH---H-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence             100   0 00000011222333343  6777888888888999999998888888888888888888888888887776


Q ss_pred             cc
Q 006469          465 SS  466 (644)
Q Consensus       465 ~~  466 (644)
                      ..
T Consensus       480 ~~  481 (980)
T KOG0980|consen  480 RA  481 (980)
T ss_pred             HH
Confidence            53

>PRK09039 hypothetical protein; Validated

Probab=94.80  E-value=2.2  Score=46.36  Aligned_cols=65  Identities=18%  Similarity=0.155  Sum_probs=35.4

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHH
Q 006469          251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETA  326 (644)
Q Consensus       251 aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~  326 (644)
                      +++.........++..+..|.++++.||.+|+.......           ..+........+|..|...+....+.
T Consensus       123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~-----------~ae~~~~~~~~~i~~L~~~L~~a~~~  187 (343)
T PRK09039        123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALD-----------ASEKRDRESQAKIADLGRRLNVALAQ  187 (343)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444455555555556666666555554432           23333445566677777777777654

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=94.71  E-value=4.7  Score=40.69  Aligned_cols=26  Identities=19%  Similarity=0.323  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          253 VNLLMDEVERAQTRLLSLQREKDLLR  278 (644)
Q Consensus       253 leml~~dLEra~~R~~~lE~ene~Lr  278 (644)
                      +.-.+..+++...|+..+|.+.+...
T Consensus       160 ~~~a~~~~er~e~ki~~~ea~a~a~~  185 (221)
T PF04012_consen  160 VSSAMDSFERMEEKIEEMEARAEASA  185 (221)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556677777777777777765444

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=94.61  E-value=3.4  Score=42.39  Aligned_cols=118  Identities=24%  Similarity=0.320  Sum_probs=62.2

Q ss_pred             hhHhHHHHHHHHHHHHhHhhhhHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 006469          138 ENRKMKIELEEYRTEATHLKNQQS----TIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQ  213 (644)
Q Consensus       138 e~~~Lk~el~~l~~e~a~lk~q~~----~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~~~~~erE~~L~~q  213 (644)
                      +...++..+..++.++.++++|..    +++.+.+++...+.++     ..+ ..+.++.+ +...+..|+++...|.++
T Consensus        39 e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl-----~~v-~~~~e~~a-L~~E~~~ak~r~~~le~e  111 (239)
T COG1579          39 ELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL-----SAV-KDERELRA-LNIEIQIAKERINSLEDE  111 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcc-ccHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            333444444555555555554443    4444555555555544     111 12333333 445556788888888877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHH
Q 006469          214 LRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVER  262 (644)
Q Consensus       214 l~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEr  262 (644)
                      |..+...++.+....+..+..+........+.......++..+..+...
T Consensus       112 l~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~  160 (239)
T COG1579         112 LAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQE  160 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777666666666666555555555444333344444444444444333

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=94.53  E-value=4  Score=38.68  Aligned_cols=25  Identities=20%  Similarity=0.307  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Q 006469          260 VERAQTRLLSLQREKDLLRSQLQSA  284 (644)
Q Consensus       260 LEra~~R~~~lE~ene~Lr~eL~~a  284 (644)
                      +|..+.|+..||.+.+.....|..+
T Consensus        75 ~E~l~rriq~LEeele~ae~~L~e~   99 (143)
T PF12718_consen   75 AEQLNRRIQLLEEELEEAEKKLKET   99 (143)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            3344445555555555554444443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=94.52  E-value=8.2  Score=45.35  Aligned_cols=103  Identities=19%  Similarity=0.291  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          203 LQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQ  282 (644)
Q Consensus       203 ~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~  282 (644)
                      ++.+..+|-+-++.++..++.+.........+|+..+..++.+.+...-|++-.+..+...+-++++.|+||-.|.--  
T Consensus       453 lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~it--  530 (861)
T PF15254_consen  453 LQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGIT--  530 (861)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhH--
Confidence            455566777777778888888887777777788888888888888888888888888888888999999988777633  


Q ss_pred             hhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006469          283 SANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNE  330 (644)
Q Consensus       283 ~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~  330 (644)
                                             +.++|.+|.+|++=.+.|+.+...+
T Consensus       531 -----------------------lrQrDaEi~RL~eLtR~LQ~Sma~l  555 (861)
T PF15254_consen  531 -----------------------LRQRDAEIERLRELTRTLQNSMAKL  555 (861)
T ss_pred             -----------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                   5667888999988888888776544

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=94.50  E-value=7.3  Score=43.41  Aligned_cols=23  Identities=13%  Similarity=0.086  Sum_probs=15.7

Q ss_pred             HhhHhhHHHHHHHHHHhHHhhcC
Q 006469           49 ENQENSQKNRRKLAESTRDFKKA   71 (644)
Q Consensus        49 ~~q~~s~~sRK~La~~Tk~Fkk~   71 (644)
                      ..|-+=+.||.-+..-.+++.--
T Consensus        70 ~tq~~il~S~~v~~~Vi~~l~l~   92 (444)
T TIGR03017        70 ATQVDIINSDRVAKKVVDKLKLD   92 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCC
Confidence            44445578888887777777654

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=94.28  E-value=1.6  Score=40.57  Aligned_cols=73  Identities=15%  Similarity=0.247  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH---HhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006469          215 RQAKDSVATMQKLHELAQSQLFEVRAQSDEER---VAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE  287 (644)
Q Consensus       215 ~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~---~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~  287 (644)
                      ..++..+..++..++.......+...+|+.+.   +....+|..+..++...+..+..+..+.+..+..|......
T Consensus        20 ~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~s   95 (132)
T PF07926_consen   20 EDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEAS   95 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33333344444444433333445556676662   23356677777777777777777777777777776554443

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=94.18  E-value=14  Score=42.83  Aligned_cols=68  Identities=10%  Similarity=0.156  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469          216 QAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMD------------EVERAQTRLLSLQREKDLLRSQLQS  283 (644)
Q Consensus       216 ~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~------------dLEra~~R~~~lE~ene~Lr~eL~~  283 (644)
                      .-...+..|+..|...+..|.+.+..|+.........+.-+..            |-..|+.-+..++.....|...+..
T Consensus       133 ~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~  212 (560)
T PF06160_consen  133 KNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMED  212 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666666666666766666666553333333322222            3334666666666666666666544

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=94.18  E-value=9.1  Score=40.65  Aligned_cols=84  Identities=26%  Similarity=0.377  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHh---hHHh--------HHHHHHHHHHHHHHHHHHHH
Q 006469          204 QEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVA---KQSE--------VNLLMDEVERAQTRLLSLQR  272 (644)
Q Consensus       204 ~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a---~~aE--------leml~~dLEra~~R~~~lE~  272 (644)
                      .++-..|..+|..+...+..|+..+. ...+|...-...+++...   ....        ..--...++.-+.++..||.
T Consensus        96 ~~~~~~le~~L~~~~e~v~qLrHeL~-~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEe  174 (306)
T PF04849_consen   96 SERNEALEEQLGAALEQVEQLRHELS-MKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEE  174 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHH
Confidence            34444556666666666666665554 233444333322222110   0000        01112346677889999999


Q ss_pred             HHHHHHHHHHhhhhhc
Q 006469          273 EKDLLRSQLQSANDEA  288 (644)
Q Consensus       273 ene~Lr~eL~~a~s~~  288 (644)
                      +|..||.+.+......
T Consensus       175 EN~~LR~Ea~~L~~et  190 (306)
T PF04849_consen  175 ENEQLRSEASQLKTET  190 (306)
T ss_pred             HHHHHHHHHHHhhHHH
Confidence            9999999988776554

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=94.10  E-value=15  Score=42.74  Aligned_cols=51  Identities=8%  Similarity=0.193  Sum_probs=24.8

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          410 KNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDI  460 (644)
Q Consensus       410 kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL  460 (644)
                      .-..+..++..+.....++...+..+.+.-..+...+...+..+..+..-+
T Consensus       384 ~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l  434 (569)
T PRK04778        384 ELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYL  434 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444445555555555555555555555555555555444444433333

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=94.07  E-value=5  Score=45.56  Aligned_cols=36  Identities=28%  Similarity=0.305  Sum_probs=28.5

Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469          248 AKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQS  283 (644)
Q Consensus       248 a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~  283 (644)
                      .....+.-+...+..++.++..++.+...|+.++..
T Consensus       201 ~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~  236 (498)
T TIGR03007       201 DYYSEISEAQEELEAARLELNEAIAQRDALKRQLGG  236 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            345677778888888888888888888888887764

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.91  E-value=8.3  Score=45.50  Aligned_cols=121  Identities=14%  Similarity=0.162  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhcccCCcccchhhhhcc
Q 006469          317 NSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATN  396 (644)
Q Consensus       317 ~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf~~~d~~~~~~a~~  396 (644)
                      .+++.+...++..+.....-++..+.+...+...+.++|+.+++..  .+....+|+++.+|| ++||-+.+.-.     
T Consensus       652 ~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~--~s~hsql~~q~~~Lk-~qLg~~~~~~~-----  723 (970)
T KOG0946|consen  652 HEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDF--ISEHSQLKDQLDLLK-NQLGIISSKQR-----  723 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-HHhcccccchh-----
Confidence            3444455555555556666666777777777777788888888765  477889999999999 78885432110     


Q ss_pred             hhhhchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          397 DEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQK  451 (644)
Q Consensus       397 ~~~~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~  451 (644)
                           .+-+ ..++++-...+|..++.+...+....+.+.+++..-.+.++.++.
T Consensus       724 -----~~~q-~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~  772 (970)
T KOG0946|consen  724 -----DLLQ-GAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKA  772 (970)
T ss_pred             -----hHHh-HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence                 1111 456778888888888888888887777777666555555444443

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=93.89  E-value=27  Score=44.97  Aligned_cols=27  Identities=19%  Similarity=0.236  Sum_probs=22.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          501 DQSSMLKVICNQRDRFRARLRETEEEV  527 (644)
Q Consensus       501 ~~~siL~Ivt~QRDRfr~rn~ELE~el  527 (644)
                      +...++..|..+++.-+.-+.|-|.+|
T Consensus      1083 ~~~~l~~~l~~~i~~~~~ll~e~er~l 1109 (1353)
T TIGR02680      1083 TPAGLLARLEQEIAQRRELLTAREREL 1109 (1353)
T ss_pred             CHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            566788888888888888888877776

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>smart00787 Spc7 Spc7 kinetochore protein

Probab=93.83  E-value=2.5  Score=45.23  Aligned_cols=120  Identities=22%  Similarity=0.244  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchh---hhHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006469          255 LLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNS---YLENSLSAKEKIISELNSELHNIETALSNER  331 (644)
Q Consensus       255 ml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s---~le~el~~ke~~i~~L~~e~~~L~~~l~~~r  331 (644)
                      .|+.+++.++.=+-.+..+...|+.++...+.....-   +.|...   .+..++.....+|.....++..++..+..  
T Consensus       162 ~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~---~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~--  236 (312)
T smart00787      162 LLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDEL---EDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQE--  236 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            3444444444444444555555555544444332110   011111   12223333333344444444444433322  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHHHhc
Q 006469          332 EQHMNEIKKLNALLIEKEAALEDMKKELQAR--PTSKMVDDLRKKVKILQAV  381 (644)
Q Consensus       332 ~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~--~~~sDYeeiKrEL~iLk~I  381 (644)
                        +...+.....+..+...++.+++..++..  -+..+...||..++.|+..
T Consensus       237 --l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l  286 (312)
T smart00787      237 --LESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL  286 (312)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence              33334555555666777778888877655  3456889999999999976

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=93.80  E-value=22  Score=43.72  Aligned_cols=37  Identities=19%  Similarity=0.170  Sum_probs=25.4

Q ss_pred             ChhHhhhHHHHHHhhhcCCchhhHHHhhh-hhhhcchhh
Q 006469          599 NPFAAFSKKERDQRYKELGIRDRITLSSG-RFLLGNKYN  636 (644)
Q Consensus       599 ~Pf~~F~~~E~~r~~~~l~~~er~~l~~~-r~vL~nr~~  636 (644)
                      .+|.-+-+-+ -|.+..||-.|++.++++ |+-|+.-++
T Consensus       800 ~~~~~~~~~~-~r~~~~LSGGE~~~~sLalrLALs~~~~  837 (908)
T COG0419         800 LVVVVYDGGE-VRPIKTLSGGERFLASLALRLALSDLLQ  837 (908)
T ss_pred             eEEEEecCCC-ccccccCCchHHHHHHHHHHHHHHHHHh
Confidence            4565566666 677899999999998884 554444333

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=93.65  E-value=6.5  Score=37.12  Aligned_cols=11  Identities=36%  Similarity=0.335  Sum_probs=4.5

Q ss_pred             HHHHHHHHHHH
Q 006469          310 EKIISELNSEL  320 (644)
Q Consensus       310 e~~i~~L~~e~  320 (644)
                      ...|++|++-+
T Consensus        93 q~kv~eLE~~~  103 (140)
T PF10473_consen   93 QEKVSELESLN  103 (140)
T ss_pred             HHHHHHHHHHh
Confidence            33344444333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=93.59  E-value=18  Score=42.17  Aligned_cols=273  Identities=20%  Similarity=0.255  Sum_probs=139.6

Q ss_pred             hhhHhhHhHHHHHHHHHHHHhHhhhhHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 006469          134 ELESENRKMKIELEEYRTEATHLKNQQS-TIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQD  212 (644)
Q Consensus       134 ~le~e~~~Lk~el~~l~~e~a~lk~q~~-~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~~~~~erE~~L~~  212 (644)
                      +..+....|+..++.|+.++.......+ -...|+++..+++-..  .-.   +....+|.        -..+....++.
T Consensus       328 eh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevER--v~s---ktLQ~ELs--------rAqea~~~lqq  394 (739)
T PF07111_consen  328 EHRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVER--VGS---KTLQAELS--------RAQEARRRLQQ  394 (739)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--Hhh---HHHHHHHH--------HHHHHHHHHHH
Confidence            3456677888888888888877543322 4455665555443322  000   00111121        11122223556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC--C
Q 006469          213 QLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAG--S  290 (644)
Q Consensus       213 ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~--~  290 (644)
                      +...++..++-+.......|.-|           .+..+.++-....|-.-..|+.-+-+++..++..++.-..-..  .
T Consensus       395 q~~~aee~Lk~v~eav~S~q~~L-----------~s~ma~ve~a~aRL~sL~~RlSyAvrrv~tiqGL~Ark~Alaqlrq  463 (739)
T PF07111_consen  395 QTASAEEQLKLVSEAVSSSQQWL-----------ESQMAKVEQALARLPSLSNRLSYAVRRVHTIQGLMARKLALAQLRQ  463 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhHHHHHHhcccchhHHHHHHHHHHHHHHh
Confidence            66666666666665555444321           1223445555555555666666666667788877664332111  0


Q ss_pred             CCC-CCCCchhhhHhhhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 006469          291 RNS-DTLDSNSYLENSLSAKEKIISELNSELHN----IETALSNEREQHMNE-------IKKLNALLIEKEAALEDMKKE  358 (644)
Q Consensus       291 ~~~-~~~~~~s~le~el~~ke~~i~~L~~e~~~----L~~~l~~~r~~~~~~-------~~~L~~~l~~~~~~~~~L~~~  358 (644)
                      ... +..-....+..+|.....+..+|.+++..    ++......++....+       ...|+..+......+..+...
T Consensus       464 e~~~~~pp~~~dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~Q  543 (739)
T PF07111_consen  464 EQCPPSPPSVTDLSLELQQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQ  543 (739)
T ss_pred             ccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000 01112225656666665566666555442    222222333333332       345555555555555555555


Q ss_pred             HhcC-----CChhhHHHHHHHHHHHHhcccCCcccchhhhhcchhhhchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 006469          359 LQAR-----PTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLE  433 (644)
Q Consensus       359 l~~~-----~~~sDYeeiKrEL~iLk~IEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~  433 (644)
                      |...     .+...-..+++||.--+.+ |+.        + ......-+|+-|.++-..++..|...|..|....-.+.
T Consensus       544 L~~Ar~~lqes~eea~~lR~EL~~QQ~~-y~~--------a-lqekvsevEsrl~E~L~~~E~rLNeARREHtKaVVsLR  613 (739)
T PF07111_consen  544 LEAARKSLQESTEEAAELRRELTQQQEV-YER--------A-LQEKVSEVESRLREQLSEMEKRLNEARREHTKAVVSLR  613 (739)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHH--------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5432     0111223444444444433 110        0 01233467888888889999999999988888877777


Q ss_pred             HHHHHHH
Q 006469          434 TAEGKIA  440 (644)
Q Consensus       434 ~l~~~~~  440 (644)
                      +++....
T Consensus       614 Q~qrqa~  620 (739)
T PF07111_consen  614 QIQRQAA  620 (739)
T ss_pred             HHHHHHH
Confidence            7765444

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=93.54  E-value=26  Score=43.77  Aligned_cols=48  Identities=17%  Similarity=0.207  Sum_probs=31.5

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQ  454 (644)
Q Consensus       407 Ll~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~  454 (644)
                      +++.|++|..+|...-...+.+..+.......+..+.+.....++-++
T Consensus       263 ~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~  310 (1109)
T PRK10929        263 QFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQ  310 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            557788888888877777666666666666666655555554444443

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=93.51  E-value=12  Score=39.93  Aligned_cols=138  Identities=17%  Similarity=0.203  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhcccCCcccchhh
Q 006469          313 ISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWE  392 (644)
Q Consensus       313 i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf~~~d~~~~~  392 (644)
                      -..+..+|..|...+...-+.+.-....+...+..+.-++.-+.++++..  ..-+..-......++.+-+  .      
T Consensus       130 ~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~--~~~~~~e~~k~~~~~~~~l--~------  199 (309)
T PF09728_consen  130 NIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQ--QEEAEQEKEKAKQEKEILL--E------  199 (309)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHH--H------
Confidence            44577888888888877777766555555555555555555555555543  1122222222222322100  0      


Q ss_pred             hhcchhhhchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 006469          393 VATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSK  467 (644)
Q Consensus       393 ~a~~~~~~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~  467 (644)
                            ....+.. +......|..+|..+-....+.+..+.....-+.....++....+-+.+||.+-.......
T Consensus       200 ------~~~~~~~-~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~  267 (309)
T PF09728_consen  200 ------EAAQVQT-LKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKW  267 (309)
T ss_pred             ------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  0001122 3334444444555554444555555444555555555667777777777777776665443

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=93.46  E-value=22  Score=42.57  Aligned_cols=135  Identities=19%  Similarity=0.246  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcchHHHH---hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCC
Q 006469          221 VATMQKLHELAQSQLFEVRAQSDEERV---AKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLD  297 (644)
Q Consensus       221 l~~L~~~~e~~Q~~L~~~~~k~~~~~~---a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~  297 (644)
                      ++++....-+.+.+...++.+|.+-..   ....-..-+..-++.+.+-+.+++++|..|..+|..+....+-....   
T Consensus       412 ~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K---  488 (980)
T KOG0980|consen  412 VEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETK---  488 (980)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            344444444444444444444433321   11222334455566777777788999999999888877655310000   


Q ss_pred             chhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          298 SNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKEL  359 (644)
Q Consensus       298 ~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l  359 (644)
                       ..+..-.+.+.+.+..-|..++..|+.++......+.++...|...+.++-.....+..++
T Consensus       489 -~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~  549 (980)
T KOG0980|consen  489 -TESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVARE  549 (980)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence             0011112333344444455556666666666666666667777776666655555555554

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=93.42  E-value=5.4  Score=39.97  Aligned_cols=20  Identities=25%  Similarity=0.326  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 006469          263 AQTRLLSLQREKDLLRSQLQ  282 (644)
Q Consensus       263 a~~R~~~lE~ene~Lr~eL~  282 (644)
                      +.-+..-||+....|...|+
T Consensus       141 ~~~kn~lLEkKl~~l~~~lE  160 (201)
T PF13851_consen  141 TGLKNLLLEKKLQALSEQLE  160 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44444455555555554443

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=93.41  E-value=8.8  Score=37.93  Aligned_cols=31  Identities=32%  Similarity=0.341  Sum_probs=20.6

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQL  281 (644)
Q Consensus       251 aEleml~~dLEra~~R~~~lE~ene~Lr~eL  281 (644)
                      .|-.-+..+.+..+.|..+|-..+..|..++
T Consensus       109 een~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql  139 (193)
T PF14662_consen  109 EENGKLLAERDGLKKRSKELATEKATLQRQL  139 (193)
T ss_pred             HHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence            4444555556666667777777777777776

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=93.39  E-value=10  Score=38.66  Aligned_cols=41  Identities=24%  Similarity=0.259  Sum_probs=24.9

Q ss_pred             hhhhhcCCCChHHHHHHHHHHHhhhhhhHhhHhHHHHHHHHHHHHhH
Q 006469          109 YQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATH  155 (644)
Q Consensus       109 Y~~L~eaPDP~PlLe~s~~~~~~~~~le~e~~~Lk~el~~l~~e~a~  155 (644)
                      -..+-.+-||.-.|+..+.      +.+.+..+++..+...-.....
T Consensus        16 ~~~~dk~EDp~~~l~Q~ir------d~~~~l~~ar~~~A~~~a~~k~   56 (225)
T COG1842          16 NELLDKAEDPEKMLEQAIR------DMESELAKARQALAQAIARQKQ   56 (225)
T ss_pred             HHHHHhhcCHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence            3556678899977766554      3455666666665554444333

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=93.06  E-value=14  Score=39.27  Aligned_cols=33  Identities=30%  Similarity=0.377  Sum_probs=24.9

Q ss_pred             hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006469          403 MESLLLDKNRKMEHELTQLKVKLSEKTSLLETAE  436 (644)
Q Consensus       403 LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~  436 (644)
                      ++. |..|-|.|+.++-.||.....+.+....++
T Consensus       162 le~-Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~E  194 (306)
T PF04849_consen  162 LEA-LQEKLKSLEEENEQLRSEASQLKTETDTYE  194 (306)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHhhHHHhhcc
Confidence            455 889999999999999988877775444443

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.06  E-value=24  Score=41.90  Aligned_cols=57  Identities=19%  Similarity=0.295  Sum_probs=36.1

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          405 SLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDIL  461 (644)
Q Consensus       405 ~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~  461 (644)
                      .++..||-.++.+++....+..++.-.+....+.+..+...+..+..-++..|....
T Consensus       893 a~~~~k~~nl~lki~s~kqeqee~~v~~~~~~~~i~alk~~l~dL~q~~eeie~e~~  949 (970)
T KOG0946|consen  893 ALKTVKSENLSLKIVSNKQEQEELLVLLADQKEKIQALKEALEDLNQPVEEIEDEKV  949 (970)
T ss_pred             HHHHhhcccchhcccchhhhHHHHHHHHhhHHHHHHHHHHHHHHhCCChhhHHhhhh
Confidence            445667777888888777777777776666666666665555555444444444443

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=92.79  E-value=11  Score=39.12  Aligned_cols=112  Identities=16%  Similarity=0.198  Sum_probs=62.4

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccc
Q 006469          407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTE  486 (644)
Q Consensus       407 Ll~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (644)
                      |-.++.+|.++|..-..+..-+++.+......+..+++++.       ++..+|++.+....     ..+..+.. +.+ 
T Consensus        79 lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelk-------r~KsELErsQ~~~~-----~~~~sl~~-~st-  144 (307)
T PF10481_consen   79 LEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELK-------RCKSELERSQQAAS-----SGDVSLNP-CST-  144 (307)
T ss_pred             HHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhc-----cCCccccc-cCC-
Confidence            55577789999999888888888887777776666655554       45555555553321     00100000 000 


Q ss_pred             cccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469          487 LSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA  546 (644)
Q Consensus       487 ~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~  546 (644)
                        |--....           |..-+| -.--.+..+|.+...+.-..-..|..|+..|+.
T Consensus       145 --pqk~f~~-----------p~tp~q-~~~~sk~e~L~ekynkeveerkrle~e~k~lq~  190 (307)
T PF10481_consen  145 --PQKSFAT-----------PLTPSQ-YYSDSKYEELQEKYNKEVEERKRLEAEVKALQA  190 (307)
T ss_pred             --chhhccC-----------CCChhh-hhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence              0000000           000011 111346677777777777777778888888886

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=92.78  E-value=6.1  Score=37.28  Aligned_cols=52  Identities=17%  Similarity=0.194  Sum_probs=23.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006469          412 RKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKG  463 (644)
Q Consensus       412 rkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~  463 (644)
                      |+.+.+-+.+.-.+..++..++..+.....+..+.+..+..|..|+..|..+
T Consensus        13 K~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~l   64 (140)
T PF10473_consen   13 KESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEEL   64 (140)
T ss_pred             HHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444444444444444444444444

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG2991 consensus Splicing regulator [RNA processing and modification]

Probab=92.71  E-value=13  Score=38.11  Aligned_cols=179  Identities=15%  Similarity=0.198  Sum_probs=90.4

Q ss_pred             hhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Q 006469          301 YLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQA  380 (644)
Q Consensus       301 ~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~  380 (644)
                      .+...++.++.+..++.+.++-|.+...-....+.+.+  |.   -.++.....|+.+|+.-  ..-.++...+|..-+ 
T Consensus       133 ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~l--lD---PAinl~F~rlK~ele~t--k~Klee~QnelsAwk-  204 (330)
T KOG2991|consen  133 ILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTL--LD---PAINLFFLRLKGELEQT--KDKLEEAQNELSAWK-  204 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHh--hC---hHHHHHHHHHHHHHHHH--HHHHHHHHhhhheee-
Confidence            34455677777788888877777655432111111110  11   11222233444444332  223444444444433 


Q ss_pred             cccCCcccchhhhhcchhhhchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          381 VGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDI  460 (644)
Q Consensus       381 IEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL  460 (644)
                        |-.+.          ..    -..|+.|-|-|..+...|-.+..  ++++..|..++.--...-++++.--..|-..+
T Consensus       205 --FTPdS----------~t----GK~LMAKCR~L~qENeElG~q~s--~Gria~Le~eLAmQKs~seElkssq~eL~dfm  266 (330)
T KOG2991|consen  205 --FTPDS----------KT----GKMLMAKCRTLQQENEELGHQAS--EGRIAELEIELAMQKSQSEELKSSQEELYDFM  266 (330)
T ss_pred             --ecCCC----------cc----hHHHHHHHHHHHHHHHHHHhhhh--cccHHHHHHHHHHHHhhHHHHHHhHHHHHHHH
Confidence              54321          11    23489999999999988875543  34444444444433333333333333333333


Q ss_pred             HhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          461 LKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVL  537 (644)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~l  537 (644)
                      ..+.....                                +.++-+-|+..+...-|.+|.-|+..+..+.+-+...
T Consensus       267 ~eLdedVE--------------------------------gmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~d~  311 (330)
T KOG2991|consen  267 EELDEDVE--------------------------------GMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVGDK  311 (330)
T ss_pred             HHHHHHHh--------------------------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            33322221                                3344466777887777877777777776666555443

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=92.71  E-value=25  Score=41.14  Aligned_cols=101  Identities=19%  Similarity=0.295  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch--HHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006469          207 EQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSD--EERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSA  284 (644)
Q Consensus       207 E~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~--~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a  284 (644)
                      ++.+.++...++...+.+.+..... .++.+.+....  ........|++-+......-=+++..+++.+.+++++++..
T Consensus       192 eke~~~~~~ql~~~~q~~~~~~~~l-~e~~~~~qq~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~  270 (716)
T KOG4593|consen  192 EKELDRQHKQLQEENQKIQELQASL-EERADHEQQNAELEQQLSLSEELEAINKNMKDQLQELEELERALSQLREELATL  270 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444445555544444444322 22333322211  11233344666555555555678888999999999998876


Q ss_pred             hhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006469          285 NDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNE  330 (644)
Q Consensus       285 ~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~  330 (644)
                      +....            .          +--|..|+.+|++.+...
T Consensus       271 re~~~------------t----------v~~LqeE~e~Lqskl~~~  294 (716)
T KOG4593|consen  271 RENRE------------T----------VGLLQEELEGLQSKLGRL  294 (716)
T ss_pred             HHhhh------------h----------hHHHHHHHHHHHHHHHHH
Confidence            65542            1          444666667776666543

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=92.56  E-value=22  Score=40.29  Aligned_cols=22  Identities=18%  Similarity=0.285  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Q 006469          264 QTRLLSLQREKDLLRSQLQSAN  285 (644)
Q Consensus       264 ~~R~~~lE~ene~Lr~eL~~a~  285 (644)
                      +-.+..+.++.+.|+.++....
T Consensus       274 hP~v~~l~~qi~~l~~~l~~~~  295 (498)
T TIGR03007       274 HPDVIATKREIAQLEEQKEEEG  295 (498)
T ss_pred             ChHHHHHHHHHHHHHHHHHhhc
Confidence            3455667777777777765543

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif

Probab=92.43  E-value=4.9  Score=45.39  Aligned_cols=89  Identities=19%  Similarity=0.325  Sum_probs=63.1

Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 006469          249 KQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALS  328 (644)
Q Consensus       249 ~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~  328 (644)
                      -...++-++.++..|..++.....+.+.|...|..+...                  ....+.++..+...+.+|+..|.
T Consensus       418 Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~e------------------k~~l~eeL~~a~~~i~~LqDEL~  479 (518)
T PF10212_consen  418 YMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKE------------------KESLEEELKEANQNISRLQDELE  479 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778888999999999999999999999988765332                  33445567777777788887777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 006469          329 NEREQHMNEIKKLNALLIEKEAALEDMKKELQAR  362 (644)
Q Consensus       329 ~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~  362 (644)
                      ..+...+.++.-+       .+++..|-.+|.++
T Consensus       480 TTr~NYE~QLs~M-------SEHLasmNeqL~~Q  506 (518)
T PF10212_consen  480 TTRRNYEEQLSMM-------SEHLASMNEQLAKQ  506 (518)
T ss_pred             HHHhhHHHHHHHH-------HHHHHHHHHHHHHH
Confidence            7777776665444       44555555555554

It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=92.17  E-value=23  Score=39.51  Aligned_cols=127  Identities=8%  Similarity=0.143  Sum_probs=56.9

Q ss_pred             hHHHHH----HHhhhhhcCCCChHHHHHHHHHHH--hhhhhhHhhHhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHH
Q 006469          101 GENAFL----NIYQKLYEAPDPYPALASIAEQDL--KLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLE  174 (644)
Q Consensus       101 aE~aFl----~~Y~~L~eaPDP~PlLe~s~~~~~--~~~~le~e~~~Lk~el~~l~~e~a~lk~q~~~~~~Lke~~~~le  174 (644)
                      +|..||    .-|+...+..|-+..++.-+....  -...+-.++..|+.+++.+...+.+       ..++-+.+..++
T Consensus       229 Vek~lfdY~~~~Y~~fl~~~~~~~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~e-------a~k~s~~i~~l~  301 (622)
T COG5185         229 VEKLLFDYFTESYKSFLKLEDNYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQE-------AMKISQKIKTLR  301 (622)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence            455554    456666655544443333221110  0112344455555555554444444       444444444444


Q ss_pred             HHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          175 QQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLF  236 (644)
Q Consensus       175 ~~~e~~~~~~v~~ke~el~~~~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~  236 (644)
                      .++...-..-++ -++. -..+.-|.+.|-.+-..|...++.-+.+|+.|++..+....++.
T Consensus       302 ek~r~l~~D~nk-~~~~-~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~  361 (622)
T COG5185         302 EKWRALKSDSNK-YENY-VNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLR  361 (622)
T ss_pred             HHHHHHhhhHHH-HHHH-HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            444222221110 0111 11223334455555556666666666666666666665554443

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.80  E-value=27  Score=39.64  Aligned_cols=48  Identities=17%  Similarity=0.254  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHH
Q 006469          507 KVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGK  554 (644)
Q Consensus       507 ~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEk  554 (644)
                      .+..+-...+++..+..|.+...+-..+.+-+..+...+.|=...-++
T Consensus       314 el~iseiqkLkqqL~smErek~~l~anL~dtqt~le~T~~~l~~~~er  361 (772)
T KOG0999|consen  314 ELNISEIQKLKQQLMSMEREKAELLANLQDTQTQLEHTEGDLMEQRER  361 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccchhHHHHHHHH
Confidence            344455556666666666666665555555555555555544433333

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=91.69  E-value=24  Score=38.70  Aligned_cols=15  Identities=13%  Similarity=0.206  Sum_probs=10.7

Q ss_pred             HHHHHHHhhcChhHh
Q 006469          589 KYKKMYEDDINPFAA  603 (644)
Q Consensus       589 ~Y~~~YE~~L~Pf~~  603 (644)
                      .-+..|+-.|+||..
T Consensus       400 ~~~~~~~~~l~~~~~  414 (423)
T TIGR01843       400 GERTVIEYLLKPITD  414 (423)
T ss_pred             CCccHHHHHHHHHHH
Confidence            456778888888854

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=91.53  E-value=15  Score=36.20  Aligned_cols=38  Identities=26%  Similarity=0.335  Sum_probs=29.1

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 006469          251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA  288 (644)
Q Consensus       251 aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~  288 (644)
                      ..|+.+..=||--++|...|..-|.-||++|..++..+
T Consensus        60 ~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N   97 (182)
T PF15035_consen   60 PDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKAN   97 (182)
T ss_pred             ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555666677777788888888888999999987765

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=91.46  E-value=35  Score=40.26  Aligned_cols=73  Identities=16%  Similarity=0.181  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 006469          209 ALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA  288 (644)
Q Consensus       209 ~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~  288 (644)
                      .+..++..+...+..++..++..+..+.+++.......+....+       .+....++..++.+....+.++...-++.
T Consensus       220 ~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~-------r~~Le~ei~~le~e~~e~~~~l~~l~~~~  292 (650)
T TIGR03185       220 EQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEE-------REQLERQLKEIEAARKANRAQLRELAADP  292 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            34444444445555555555555555555544433333333333       33344455556666666666666555444

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]

Probab=90.93  E-value=27  Score=37.98  Aligned_cols=28  Identities=14%  Similarity=0.046  Sum_probs=20.8

Q ss_pred             HHHHHhhhhcCChhHHHhhHhHHHHHHH
Q 006469           21 VSVISNFWKDFDLEKEKSLLDELGLKIA   48 (644)
Q Consensus        21 ~~~a~~~W~~~dl~~lq~~LD~~~~ei~   48 (644)
                      -..+++-|-..-+..+.--+|++|.+.-
T Consensus        32 t~~~~k~~~~~~~~~~~~~~d~~A~~~~   59 (593)
T KOG4807|consen   32 TSQWKKHWFVLTDSSLKYYRDSTAEEAD   59 (593)
T ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence            3456778888888888888888877653

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=90.88  E-value=15  Score=34.83  Aligned_cols=53  Identities=17%  Similarity=0.264  Sum_probs=25.3

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDD  459 (644)
Q Consensus       407 Ll~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~D  459 (644)
                      +-.+.+.++.++..+...+..|+.++..++.++..+...+...+......+..
T Consensus        19 ~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~   71 (143)
T PF12718_consen   19 LEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKR   71 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            44444455555555555555555555555444444444444444444443333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=90.85  E-value=3.4  Score=41.07  Aligned_cols=34  Identities=21%  Similarity=0.241  Sum_probs=24.8

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469          250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQS  283 (644)
Q Consensus       250 ~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~  283 (644)
                      .+|+..+.-.+..+..++..|+.+|..|-..+..
T Consensus       150 ~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~  183 (194)
T PF08614_consen  150 QDELQALQLQLNMLEEKLRKLEEENRELVERWMQ  183 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555556666666777888899999998877654

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=90.62  E-value=16  Score=37.75  Aligned_cols=24  Identities=25%  Similarity=0.505  Sum_probs=17.6

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHH
Q 006469          406 LLLDKNRKMEHELTQLKVKLSEKT  429 (644)
Q Consensus       406 lLl~kNrkL~~eLt~lR~~~~~l~  429 (644)
                      ..++||+.|+.+|..|+..+..+.
T Consensus       179 t~~EKnk~lq~QL~~L~~EL~~~k  202 (246)
T PF00769_consen  179 TYAEKNKRLQEQLKELKSELEQLK  202 (246)
T ss_dssp             -HHHH-HHHHHHHHHHHHHHHTTB
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHh
Confidence            367889999998888888776655

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.58  E-value=39  Score=40.41  Aligned_cols=34  Identities=15%  Similarity=0.327  Sum_probs=17.0

Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          249 KQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQ  282 (644)
Q Consensus       249 ~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~  282 (644)
                      ...|++.+...+..-..++..+-++.+..+.+++
T Consensus       637 ~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~  670 (717)
T PF10168_consen  637 FKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE  670 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3455555555555555555555555444444443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=90.42  E-value=2.7  Score=41.74  Aligned_cols=57  Identities=16%  Similarity=0.181  Sum_probs=40.0

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006469          407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKG  463 (644)
Q Consensus       407 Ll~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~  463 (644)
                      |..+.+.+..+|......++.+..++..++-++..++.++..++..|..|-..+...
T Consensus       128 L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~  184 (194)
T PF08614_consen  128 LEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQR  184 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666667777777777777777777777777777777777777777776655543

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=90.29  E-value=19  Score=37.19  Aligned_cols=121  Identities=14%  Similarity=0.277  Sum_probs=52.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhcccCCccc
Q 006469          309 KEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEA  388 (644)
Q Consensus       309 ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf~~~d~  388 (644)
                      .+..+.++.++.......|...    ...+..|..++.....+...|+.+.      .+.++.+..|..-...    .  
T Consensus        10 le~rL~q~eee~~~a~~~L~e~----e~~a~~Leek~k~aeeea~~Le~k~------~eaee~~~rL~~~~~~----~--   73 (246)
T PF00769_consen   10 LEERLRQMEEEMRRAQEALEES----EETAEELEEKLKQAEEEAEELEQKR------QEAEEEKQRLEEEAEM----Q--   73 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH-----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH----H--
Confidence            3455666666666666666332    2233445544444444445555542      3445555555443311    0  


Q ss_pred             chhhhhcchhhhchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006469          389 EDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY  464 (644)
Q Consensus       389 ~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~  464 (644)
                                         ..-...|..++..+...+..+......-..+...+..++...+....+--.-|..+-
T Consensus        74 -------------------~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~~  130 (246)
T PF00769_consen   74 -------------------EEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELLEVM  130 (246)
T ss_dssp             --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred             -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                               001112444444444444444444444455555555555555554444444444443

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=90.14  E-value=3  Score=34.93  Aligned_cols=69  Identities=29%  Similarity=0.395  Sum_probs=51.9

Q ss_pred             hhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 006469          301 YLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKV  375 (644)
Q Consensus       301 ~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL  375 (644)
                      +++..+..|+.+|.+|..|-..|...-    -.+.+.|.+|+..+......+..+...++..  -.+++.++..+
T Consensus         2 sl~~~l~EKDe~Ia~L~eEGekLSk~e----l~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~--e~~~~~l~~~l   70 (74)
T PF12329_consen    2 SLEKKLAEKDEQIAQLMEEGEKLSKKE----LKLNNTIKKLRAKIKELEKQIKELKKKLEEL--EKELESLEERL   70 (74)
T ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHh
Confidence            566678999999999999998876554    4566778888888888888888888777665  25555555544

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=90.13  E-value=29  Score=37.10  Aligned_cols=61  Identities=25%  Similarity=0.228  Sum_probs=52.4

Q ss_pred             hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006469          403 MESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY  464 (644)
Q Consensus       403 LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~  464 (644)
                      +|. +..+.++|+.+...++..+..-...+-.+-.+......++..+...+.+||+=.-.++
T Consensus       246 mek-m~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ  306 (309)
T PF09728_consen  246 MEK-MSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQ  306 (309)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344 6778899999999999999999999999999999999999999999999987655554

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=89.56  E-value=35  Score=37.18  Aligned_cols=19  Identities=16%  Similarity=0.186  Sum_probs=9.0

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 006469          214 LRQAKDSVATMQKLHELAQ  232 (644)
Q Consensus       214 l~~ae~~l~~L~~~~e~~Q  232 (644)
                      ++....+|..+++.+++++
T Consensus        76 lddi~~qlr~~rtel~~a~   94 (499)
T COG4372          76 LDDIRPQLRALRTELGTAQ   94 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444444455555555444

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=89.50  E-value=33  Score=36.79  Aligned_cols=87  Identities=15%  Similarity=0.205  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH-HHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          201 EILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE-RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRS  279 (644)
Q Consensus       201 ~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~-~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~  279 (644)
                      ....++-..|...+..+..++.+++--.......+...+...... ......|-+.+...||+++.+...||+..-.+-.
T Consensus        75 ~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lD  154 (319)
T PF09789_consen   75 SESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLD  154 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555555566666666665555555555555544432211 1112278899999999999999999999988888


Q ss_pred             HHHhhhhh
Q 006469          280 QLQSANDE  287 (644)
Q Consensus       280 eL~~a~s~  287 (644)
                      +.+.+...
T Consensus       155 EkeEl~~E  162 (319)
T PF09789_consen  155 EKEELVTE  162 (319)
T ss_pred             HHHHHHHH
Confidence            87765543

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=89.22  E-value=43  Score=37.70  Aligned_cols=103  Identities=16%  Similarity=0.126  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          255 LLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQH  334 (644)
Q Consensus       255 ml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~  334 (644)
                      .+..++..++.++..++.+...|+.++......... .+.. +.. .....+.....+...+..++......+...+...
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~rL~a~~~~~~~~~~~-f~~~-~~~-~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~  170 (457)
T TIGR01000        94 NEENQKQLLEQQLDNLKDQKKSLDTLKQSIENGRNQ-FPTD-DSF-GYRNLFNGYLAQVESLTSETQQQNDKSQTQNEAA  170 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-CCCC-cch-hHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            455667778888888888888888877654322110 0000 000 0111122222233344444444444444444445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469          335 MNEIKKLNALLIEKEAALEDMKKELQ  360 (644)
Q Consensus       335 ~~~~~~L~~~l~~~~~~~~~L~~~l~  360 (644)
                      ..++..+..++.....++..++..+.
T Consensus       171 ~~~~~~~~~~i~~~~~~~~~~~~~~~  196 (457)
T TIGR01000       171 EKTKAQLDQQISKTDQKLQDYQALKN  196 (457)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555555544

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=89.08  E-value=33  Score=36.21  Aligned_cols=22  Identities=27%  Similarity=0.353  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 006469          516 FRARLRETEEEVRQLKEKIGVL  537 (644)
Q Consensus       516 fr~rn~ELE~el~~~~~~i~~l  537 (644)
                      +..||.+|-.+...+...+-..
T Consensus       276 lEErNKeL~ne~n~LkEr~~qy  297 (305)
T PF14915_consen  276 LEERNKELINECNHLKERLYQY  297 (305)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHH
Confidence            5667777766666665555443

>smart00787 Spc7 Spc7 kinetochore protein

Probab=89.07  E-value=36  Score=36.55  Aligned_cols=220  Identities=21%  Similarity=0.243  Sum_probs=117.6

Q ss_pred             HHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhhcCCCChHHHHHHHHHHHhhhhhhHhhHhHHHHHHHHHHHHhHhhhhHH
Q 006469           82 SLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQS  161 (644)
Q Consensus        82 ~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~le~e~~~Lk~el~~l~~e~a~lk~q~~  161 (644)
                      |+|-.||-=.--|.++=..+=..|-++=...+.-|.|  ++.-=..    +   .++.+.      -++..|.-+|    
T Consensus        63 P~LElY~~sC~EL~~~I~egr~~~~~~E~et~~~nPp--LF~EY~~----a---~~d~r~------lm~~Qf~lvK----  123 (312)
T smart00787       63 PLLELYQFSCKELKKYISEGRDLFKEIEEETLINNPP--LFKEYFS----A---SPDVKL------LMDKQFQLVK----  123 (312)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH--HHHHHHc----C---CHHHHH------HHHHHHHHHH----
Confidence            8899999999999988888777777777776644433  4321111    0   001110      0112222222    


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 006469          162 TIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQ  241 (644)
Q Consensus       162 ~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k  241 (644)
                      ++-||+.+--=++=.+         ..-..+...+++....++.=...|.+++..+..-+-.++..+...+.++..++..
T Consensus       124 ~~aRl~ak~~WYeWR~---------kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~  194 (312)
T smart00787      124 TFARLEAKKMWYEWRM---------KLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQL  194 (312)
T ss_pred             HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4444444322121111         1122334444444445555455566666666666777777777777777666655


Q ss_pred             chHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHH
Q 006469          242 SDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELH  321 (644)
Q Consensus       242 ~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~  321 (644)
                      .++...--.+|+..+...|......+...-...+.++.++......                  +.....+++++.++++
T Consensus       195 ~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~------------------I~~~~~~k~e~~~~I~  256 (312)
T smart00787      195 EDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESK------------------IEDLTNKKSELNTEIA  256 (312)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHH
Confidence            4443333445555555555555555555555555555555443333                  3334555777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          322 NIETALSNEREQHMNEIKKLNALLIE  347 (644)
Q Consensus       322 ~L~~~l~~~r~~~~~~~~~L~~~l~~  347 (644)
                      .++..+..-+.-...++..|...+..
T Consensus       257 ~ae~~~~~~r~~t~~Ei~~Lk~~~~~  282 (312)
T smart00787      257 EAEKKLEQCRGFTFKEIEKLKEQLKL  282 (312)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            77776655555556666666544443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=88.84  E-value=68  Score=39.50  Aligned_cols=56  Identities=21%  Similarity=0.337  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhHhhHHHHhhhhcc
Q 006469          506 LKVICNQRDRFRARLRETEEEVRQ---LKEKIGVLTAELEKTKADNVQLYGKIRFVQDY  561 (644)
Q Consensus       506 L~Ivt~QRDRfr~rn~ELE~el~~---~~~~i~~lr~E~~~Lk~DN~kLYEkirylqsy  561 (644)
                      +.-+..+.+.++.+..++...+..   ....+.....++..++..--+++..+..+...
T Consensus       690 ~~~~~~el~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l  748 (908)
T COG0419         690 LEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALELLEEL  748 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566666666666565555555   44455555666666666555555444444433

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=88.19  E-value=42  Score=36.35  Aligned_cols=58  Identities=33%  Similarity=0.337  Sum_probs=31.4

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006469          407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY  464 (644)
Q Consensus       407 Ll~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~  464 (644)
                      +..+...++.++...+..+...+..+..++..+..+..+++.......+|+.++...+
T Consensus       219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~  276 (344)
T PF12777_consen  219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETE  276 (344)
T ss_dssp             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555555555555555555555555555555555555555555554443

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=87.83  E-value=35  Score=34.95  Aligned_cols=171  Identities=16%  Similarity=0.233  Sum_probs=104.8

Q ss_pred             HHHHHHHHHhcCCChhhHHHHHHHHHHHHhcccCCcccchhhhhcchhhhchhHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 006469          351 ALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTS  430 (644)
Q Consensus       351 ~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~  430 (644)
                      ....++..+...|  .....++++|.-++.-  .......       ...-+++. |-.+--...+.|..+...+.....
T Consensus        39 ~~~~~~~~i~~aP--~~~~~l~~~l~~l~~~--~~~~~~~-------~~~~s~~e-Leq~l~~~~~~L~~~q~~l~~~~~  106 (240)
T PF12795_consen   39 RAAEYQKQIDQAP--KEIRELQKELEALKSQ--DAPSKEI-------LANLSLEE-LEQRLSQEQAQLQELQEQLQQENS  106 (240)
T ss_pred             HHHHHHHHHHHhH--HHHHHHHHHHHhhhcc--ccccccC-------cccCCHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456666677664  7888888888888754  1000000       01123333 444555677778888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcccccccccc----cc-ccccCC-CCCCCcchh
Q 006469          431 LLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTEL----SE-KADKKH-TYPDQDQSS  504 (644)
Q Consensus       431 ~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~-~~~~~~~~s  504 (644)
                      .+..++.....+...+.+....+..++.+|........        .+++.+....+    .. ..-+.- -..-.+.+.
T Consensus       107 ~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~--------~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~  178 (240)
T PF12795_consen  107 QLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGE--------SPLSEAQRWLLQAELAALEAQIEMLEQELLSNNN  178 (240)
T ss_pred             HHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCc--------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHH
Confidence            88888888888888888888888888888764321110        01110000000    00 000000 000125667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          505 MLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAEL  541 (644)
Q Consensus       505 iL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~  541 (644)
                      +..+.+.|||-+..++.-++..+..++..++.+|..-
T Consensus       179 rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~~e  215 (240)
T PF12795_consen  179 RQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRRQE  215 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788899999999999999999888888888777643

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=87.55  E-value=53  Score=36.73  Aligned_cols=34  Identities=21%  Similarity=0.275  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 006469          209 ALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQS  242 (644)
Q Consensus       209 ~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~  242 (644)
                      .|+.-+...++.|.+-+...+..|.+|...+..|
T Consensus       394 nLqe~la~tqk~LqEsr~eKetLqlelkK~k~ny  427 (527)
T PF15066_consen  394 NLQEALANTQKHLQESRNEKETLQLELKKIKANY  427 (527)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhH
Confidence            3444455555555555555566665555554444

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=87.13  E-value=25  Score=34.46  Aligned_cols=55  Identities=24%  Similarity=0.372  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhhhc
Q 006469          506 LKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQD  560 (644)
Q Consensus       506 L~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkirylqs  560 (644)
                      +.-+......+..+..++...+......+..++.++..++.+.-.|-+++..+++
T Consensus       132 l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  186 (191)
T PF04156_consen  132 LDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQE  186 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444445555555555555566666677777777777777766666666666544

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=87.06  E-value=54  Score=36.29  Aligned_cols=54  Identities=15%  Similarity=0.211  Sum_probs=39.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006469          412 RKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS  465 (644)
Q Consensus       412 rkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~  465 (644)
                      .++...|..+|.++...+.........+.....+....++++..|=..|.+++-
T Consensus       335 qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~  388 (502)
T KOG0982|consen  335 QRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRR  388 (502)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            346666777777777777666666667777777777777888888888877774

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=87.02  E-value=84  Score=38.48  Aligned_cols=212  Identities=16%  Similarity=0.153  Sum_probs=109.6

Q ss_pred             CCcHHHHHhhHHHHHHhHHHHHHHhh---hhhhhHHHHHHHhhhhhcC---CCChHHHHH---HHHHHHhhhhhhHhh--
Q 006469           71 ASPEEKLSLFNSLLKGYQEEVDNLTK---RAKFGENAFLNIYQKLYEA---PDPYPALAS---IAEQDLKLSELESEN--  139 (644)
Q Consensus        71 ~~~~ekl~~~~~LLK~yQ~EID~LTk---RsK~aE~aFl~~Y~~L~ea---PDP~PlLe~---s~~~~~~~~~le~e~--  139 (644)
                      +...-.-+.|..|+..|-=.||+|+.   -=|-+|-|=|.=|+.|.|+   -||-.+|..   ..++......|+...  
T Consensus       120 N~~a~t~s~i~elv~~fNIQi~NLCqFLpQDkV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~  199 (1072)
T KOG0979|consen  120 NDSATTKSEIEELVAHFNIQIDNLCQFLPQDKVKEFARLSPIELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTT  199 (1072)
T ss_pred             ccchhhhHHHHHHHHHHhcccCchhhhccHHHHHHHHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445677899999999999999973   3344454444444444432   223222222   222211111233222  


Q ss_pred             -----HhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHH---HHHHH---HHH
Q 006469          140 -----RKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTL---EILQE---REQ  208 (644)
Q Consensus       140 -----~~Lk~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~---~~~~e---rE~  208 (644)
                           ..|+.+++.|...+..++    +-.+.+.+++-+++++.-..   ......++.+..+.+-   .++..   --.
T Consensus       200 ~~~~l~~L~~~~~~l~kdVE~~r----er~~~~~~Ie~l~~k~~~v~---y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~  272 (1072)
T KOG0979|consen  200 KTEKLNRLEDEIDKLEKDVERVR----ERERKKSKIELLEKKKKWVE---YKKHDREYNAYKQAKDRAKKELRKLEKEIK  272 (1072)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhccccc---hHhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence                 223333333333333322    22223333333433321111   1112222222222211   11111   112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH---HHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469          209 ALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE---RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN  285 (644)
Q Consensus       209 ~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~---~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~  285 (644)
                      -+......++....++.+.+...+..+.....+-.+-   .--..+++++...++|....+....+++.+..+..|-.+.
T Consensus       273 pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q  352 (1072)
T KOG0979|consen  273 PIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQ  352 (1072)
T ss_pred             hhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3355666677777777777877777777665554322   1234578888899999988888888888888888888777


Q ss_pred             hhcC
Q 006469          286 DEAG  289 (644)
Q Consensus       286 s~~~  289 (644)
                      ...+
T Consensus       353 ~el~  356 (1072)
T KOG0979|consen  353 AELQ  356 (1072)
T ss_pred             hhhh
Confidence            6544

>PRK10884 SH3 domain-containing protein; Provisional

Probab=86.88  E-value=4.6  Score=40.63  Aligned_cols=59  Identities=15%  Similarity=0.324  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHH
Q 006469          262 RAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETAL  327 (644)
Q Consensus       262 ra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l  327 (644)
                      .+..|+..+|++++.|+.+|+........       ..+.+...+...+..|++|.++|..|...+
T Consensus        90 ~~~~rlp~le~el~~l~~~l~~~~~~~~~-------~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l  148 (206)
T PRK10884         90 SLRTRVPDLENQVKTLTDKLNNIDNTWNQ-------RTAEMQQKVAQSDSVINGLKEENQKLKNQL  148 (206)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35668888888888888888876654321       112344444455555666666666555444

>PF15450 DUF4631: Domain of unknown function (DUF4631)

Probab=86.58  E-value=64  Score=36.67  Aligned_cols=198  Identities=16%  Similarity=0.254  Sum_probs=89.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          157 KNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLF  236 (644)
Q Consensus       157 k~q~~~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~  236 (644)
                      +++....+-++.++-+++..+-+.+...-.+ ...-...-+-...-++++...|...+..+.+.+++|-..+...+..+.
T Consensus       297 kaR~~k~~~e~sk~eeL~~~L~~~lea~q~a-gkla~Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld  375 (531)
T PF15450_consen  297 KARDAKEKLEESKAEELATKLQENLEAMQLA-GKLAQQETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLD  375 (531)
T ss_pred             HHHHHHhHHHHhhHHHHHHHHHHHHHHHHHh-hhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            3444444444555556666555555432211 111111111222334455556666666666666666666555554433


Q ss_pred             HhhhcchHHHHhhHHhHH-H---HHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhh
Q 006469          237 EVRAQSDEERVAKQSEVN-L---LMDEVER----AQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSA  308 (644)
Q Consensus       237 ~~~~k~~~~~~a~~aEle-m---l~~dLEr----a~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~  308 (644)
                      -.....+........|.+ .   ...++..    +...+..+.-.++.|-.+|.........-.+   +.+-.+..+-.+
T Consensus       376 ~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ks---d~d~kIdtE~k~  452 (531)
T PF15450_consen  376 LQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQIEEVSDKCDLHKS---DSDTKIDTEGKA  452 (531)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh---hhhhhccHHHHH
Confidence            221111111111111211 1   1111111    2333344455555555555554433210000   011134445666


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Q 006469          309 KEKIISELNSELHNIETALSNEREQHMN-EIKKLNALLIEKEAALEDMKKELQ  360 (644)
Q Consensus       309 ke~~i~~L~~e~~~L~~~l~~~r~~~~~-~~~~L~~~l~~~~~~~~~L~~~l~  360 (644)
                      .+..|..+..++..+-.++.-.+..... .++.++..+.  ..++..|+.-++
T Consensus       453 R~~eV~~vRqELa~lLssvQ~~~e~~~~rkiaeiqg~l~--~~qi~kle~siq  503 (531)
T PF15450_consen  453 REREVGAVRQELATLLSSVQLLKEDNPGRKIAEIQGKLA--TNQIMKLENSIQ  503 (531)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHH--HHHHHHHHHHHH
Confidence            6778888888888877777666654333 4566665555  334444544444

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=86.30  E-value=42  Score=38.80  Aligned_cols=34  Identities=21%  Similarity=0.184  Sum_probs=24.0

Q ss_pred             HHHhHHhhcCCcHHHHHhhHHHHHHhHHHHHHHhh
Q 006469           62 AESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTK   96 (644)
Q Consensus        62 a~~Tk~Fkk~~~~ekl~~~~~LLK~yQ~EID~LTk   96 (644)
                      +-.+..|+ .+|+--+....+-+|+|+..--.|.+
T Consensus       330 ~~r~~~~~-~~ddH~RDALAAA~kAY~~yk~kl~~  363 (652)
T COG2433         330 ALRTLKIS-VSDDHERDALAAAYKAYLAYKPKLEK  363 (652)
T ss_pred             HHhhcCCC-CCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            44444554 46667788888999999988766654

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=86.16  E-value=51  Score=35.15  Aligned_cols=26  Identities=19%  Similarity=0.325  Sum_probs=16.9

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHH
Q 006469          407 LLDKNRKMEHELTQLKVKLSEKTSLL  432 (644)
Q Consensus       407 Ll~kNrkL~~eLt~lR~~~~~l~~~l  432 (644)
                      +...-+.|.+++..||.++...+...
T Consensus       227 ~~shI~~Lr~EV~RLR~qL~~sq~e~  252 (310)
T PF09755_consen  227 LSSHIRSLRQEVSRLRQQLAASQQEH  252 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55556677777777777776555444

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=85.83  E-value=35  Score=32.96  Aligned_cols=122  Identities=22%  Similarity=0.334  Sum_probs=67.0

Q ss_pred             HhhHhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 006469          137 SENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQ-------MEEKVKEIVEIKQRGLAEENQKTLEILQEREQA  209 (644)
Q Consensus       137 ~e~~~Lk~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~-------~e~~~~~~v~~ke~el~~~~~ek~~~~~erE~~  209 (644)
                      .|...++.++.+++.+++.+   ...+++|+.+.+.....       +....+..+...-.+ ...++-+...+.++|..
T Consensus        27 ~E~~~l~~EL~evk~~v~~~---I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~-A~~lQ~~L~~~re~E~q  102 (159)
T PF05384_consen   27 QEYERLRKELEEVKEEVSEV---IEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEE-AHELQVRLAMLREREKQ  102 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            34555555555555555553   22444454444433333       322222222211111 11345556677888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 006469          210 LQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQRE  273 (644)
Q Consensus       210 L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~e  273 (644)
                      |..+-..+++.++.|....+-+.           .-..-..-=++.|..||......+..++.+
T Consensus       103 Lr~rRD~LErrl~~l~~tierAE-----------~l~sqi~vvl~yL~~dl~~v~~~~e~~~~~  155 (159)
T PF05384_consen  103 LRERRDELERRLRNLEETIERAE-----------NLVSQIGVVLNYLSGDLQQVSEQIEDAQQK  155 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            88888888888888888777443           222222334567777777777777666654

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=85.83  E-value=59  Score=35.57  Aligned_cols=26  Identities=23%  Similarity=0.311  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          210 LQDQLRQAKDSVATMQKLHELAQSQL  235 (644)
Q Consensus       210 L~~ql~~ae~~l~~L~~~~e~~Q~~L  235 (644)
                      +..++..++.++..++..++..+.++
T Consensus       149 l~~~i~~~~~~i~~~~~~l~~~~~~l  174 (423)
T TIGR01843       149 ILAQIKQLEAELAGLQAQLQALRQQL  174 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444333333333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=85.81  E-value=73  Score=36.61  Aligned_cols=30  Identities=27%  Similarity=0.357  Sum_probs=19.2

Q ss_pred             HHHHhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 006469          244 EERVAKQSEVNLLMDEVERAQTRLLSLQRE  273 (644)
Q Consensus       244 ~~~~a~~aEleml~~dLEra~~R~~~lE~e  273 (644)
                      .+.....-+|+++..++++..+.+-.++.+
T Consensus       339 ~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~  368 (581)
T KOG0995|consen  339 LERNKLKRELNKIQSELDRLSKEVWELKLE  368 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            334455567777777777776666655553

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=85.62  E-value=78  Score=36.78  Aligned_cols=129  Identities=14%  Similarity=0.220  Sum_probs=82.5

Q ss_pred             hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcccc
Q 006469          402 KMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSE  481 (644)
Q Consensus       402 ~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~  481 (644)
                      .+=+.+.+.-+.+...|+.+..++.++...+..|.++-..+...+..++..+...-..+.+.+=                
T Consensus       372 ~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nL----------------  435 (560)
T PF06160_consen  372 VPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNL----------------  435 (560)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----------------
Confidence            3345577778888888999999999998888888888888888888877777777766665431                


Q ss_pred             ccccc-cccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHH
Q 006469          482 AGGTE-LSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKI  555 (644)
Q Consensus       482 ~~~~~-~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEki  555 (644)
                      +|+++ .....        ...+..+.-|..+.++.+.-+..+...+......+..|...+..+= ||..|-|++
T Consensus       436 PGlp~~y~~~~--------~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li-~~A~L~E~~  501 (560)
T PF06160_consen  436 PGLPEDYLDYF--------FDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELI-DNATLAEQL  501 (560)
T ss_pred             CCCCHHHHHHH--------HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            11110 00000        0233445555556666666666666666666666666666666654 356666654

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=85.60  E-value=29  Score=32.78  Aligned_cols=76  Identities=22%  Similarity=0.343  Sum_probs=43.3

Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHH
Q 006469          248 AKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETAL  327 (644)
Q Consensus       248 a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l  327 (644)
                      ...++++-+..++++.+.+++.+++++..+......+...                  +......+.....++.++...+
T Consensus        63 ~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~------------------~~~~~~~~k~~kee~~klk~~~  124 (151)
T PF11559_consen   63 RLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQ------------------LKSLEAKLKQEKEELQKLKNQL  124 (151)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence            3445666666666666666666666666555554443332                  2233344555666667666666


Q ss_pred             HHHHHHHHHHHHHH
Q 006469          328 SNEREQHMNEIKKL  341 (644)
Q Consensus       328 ~~~r~~~~~~~~~L  341 (644)
                      ...+..+..++.+-
T Consensus       125 ~~~~tq~~~e~rkk  138 (151)
T PF11559_consen  125 QQRKTQYEHELRKK  138 (151)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66666665555333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=84.98  E-value=81  Score=36.58  Aligned_cols=13  Identities=38%  Similarity=0.373  Sum_probs=9.5

Q ss_pred             hHHHHHHHHHHHH
Q 006469          367 MVDDLRKKVKILQ  379 (644)
Q Consensus       367 DYeeiKrEL~iLk  379 (644)
                      .|+.++.=+.|++
T Consensus       306 ~y~k~~~iv~i~q  318 (861)
T KOG1899|consen  306 NYDKNAQIVRILQ  318 (861)
T ss_pred             hhhhhhhhhhhhc
Confidence            5777777777776

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=84.89  E-value=1.1e+02  Score=37.81  Aligned_cols=63  Identities=17%  Similarity=0.249  Sum_probs=51.3

Q ss_pred             chhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006469          401 SKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY  464 (644)
Q Consensus       401 ~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~  464 (644)
                      .+|+. +.+++..++..+..++.++..+..+...+...+..+...++++......|+.+.....
T Consensus       395 ~~ld~-~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~  457 (1141)
T KOG0018|consen  395 DTLDH-ELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAE  457 (1141)
T ss_pred             HHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhh
Confidence            34555 7788888999999999998888888888888888888888888888888888776554

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=84.85  E-value=1e+02  Score=37.60  Aligned_cols=106  Identities=25%  Similarity=0.309  Sum_probs=64.6

Q ss_pred             HHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHH
Q 006469          246 RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIET  325 (644)
Q Consensus       246 ~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~  325 (644)
                      ......|++-+.+-+...+.+...++.+.+.++.++.+-.....           .++..+......+.++.+++..+..
T Consensus       392 Dkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~-----------~l~~si~e~~~r~~~~~~~~~~~k~  460 (1200)
T KOG0964|consen  392 DKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIK-----------ELESSINETKGRMEEFDAENTELKR  460 (1200)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhhHhhhhhHHHHHHHHHHHHHH
Confidence            34455788777777777777777777777777777766544432           2333333334445555555555554


Q ss_pred             HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 006469          326 ALSNE---REQHMNEIKKLNALLIEKEAALEDMKKELQAR  362 (644)
Q Consensus       326 ~l~~~---r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~  362 (644)
                      .++.+   |..+-.+.++|+..+..+...+..-+..|...
T Consensus       461 ~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~  500 (1200)
T KOG0964|consen  461 ELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRAT  500 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44433   33355556777777777777777777766654

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=84.70  E-value=44  Score=38.59  Aligned_cols=18  Identities=6%  Similarity=0.169  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 006469          160 QSTIRRLEERNRQLEQQM  177 (644)
Q Consensus       160 ~~~~~~Lke~~~~le~~~  177 (644)
                      +..|...+.++...|.+.
T Consensus       351 ~kAY~~yk~kl~~vEr~~  368 (652)
T COG2433         351 YKAYLAYKPKLEKVERKL  368 (652)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            335555555555555543

>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure

Probab=84.25  E-value=5.7  Score=33.83  Aligned_cols=51  Identities=18%  Similarity=0.401  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhhhccccc
Q 006469          507 KVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNE  564 (644)
Q Consensus       507 ~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkirylqsy~~~  564 (644)
                      ..-...++++..++.+|..-|..+...+...+.|.++|++.|       +|||.|-++
T Consensus        12 ~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN-------~~Lq~YI~n   62 (80)
T PF10224_consen   12 KLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESEN-------EYLQQYIGN   62 (80)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence            455677999999999999999999999999999999999977       566666543

The exact function is unknown.

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=84.21  E-value=61  Score=34.35  Aligned_cols=45  Identities=13%  Similarity=0.330  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 006469          197 QKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQ  241 (644)
Q Consensus       197 ~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k  241 (644)
                      ......|.++-.+|..++..+..++.+++...+..-.++..++.+
T Consensus        33 ~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~k   77 (294)
T COG1340          33 RKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEK   77 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455666666666666666666666666665444444444443

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=83.91  E-value=59  Score=33.96  Aligned_cols=32  Identities=19%  Similarity=0.346  Sum_probs=25.6

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          499 DQDQSSMLKVICNQRDRFRARLRETEEEVRQL  530 (644)
Q Consensus       499 ~~~~~siL~Ivt~QRDRfr~rn~ELE~el~~~  530 (644)
                      .+..+.++..+..|=..+|.|+.|||-.|..+
T Consensus       273 ~s~~s~l~dQLK~qNQEL~ski~ELE~rLq~q  304 (307)
T PF10481_consen  273 NSSSSQLLDQLKAQNQELRSKINELELRLQGQ  304 (307)
T ss_pred             CCCchHHHHHHHHHhHHHHHHHHHHHHHHhhc
Confidence            34677788888888889999999998877654

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=83.71  E-value=30  Score=31.01  Aligned_cols=43  Identities=12%  Similarity=0.398  Sum_probs=33.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEK  543 (644)
Q Consensus       501 ~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~  543 (644)
                      +-..++|.|....+-...++..|+.++..+..++..++..+..
T Consensus        64 ~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~  106 (110)
T TIGR02338        64 DKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE  106 (110)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677888888888888888888888888887777777776544

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.56  E-value=1.2e+02  Score=36.32  Aligned_cols=34  Identities=26%  Similarity=0.345  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhh
Q 006469          512 QRDRFRARLRETEEEVRQLKEKIG-VLTAELEKTK  545 (644)
Q Consensus       512 QRDRfr~rn~ELE~el~~~~~~i~-~lr~E~~~Lk  545 (644)
                      +.|-|.....||.+.+..+.-... ..+++.+.++
T Consensus       564 eidi~n~qlkelk~~~~~q~lake~~yk~e~d~~k  598 (1118)
T KOG1029|consen  564 EIDIFNNQLKELKEDVNSQQLAKEELYKNERDKLK  598 (1118)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555554443333 2334555555

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=82.50  E-value=1.2e+02  Score=36.30  Aligned_cols=99  Identities=21%  Similarity=0.374  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Q 006469          267 LLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELH----------NIETALSNEREQHMN  336 (644)
Q Consensus       267 ~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~----------~L~~~l~~~r~~~~~  336 (644)
                      ...||-+++.||.|+.+++++.....      ...    |   ...|-.|..|+.          .|+.+|.-++..+..
T Consensus       431 ~~~Le~elekLk~eilKAk~s~~~~~------~~~----L---~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sK  497 (762)
T PLN03229        431 VRELEGEVEKLKEQILKAKESSSKPS------ELA----L---NEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSK  497 (762)
T ss_pred             CccHHHHHHHHHHHHHhcccccCCCC------ChH----H---HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Confidence            56799999999999999963332211      112    2   223555555443          356666555533322


Q ss_pred             HH---HHHHHHHHHHHHHHHHHHHHHhcC-CChhhHHHHHHHHHHHHhc
Q 006469          337 EI---KKLNALLIEKEAALEDMKKELQAR-PTSKMVDDLRKKVKILQAV  381 (644)
Q Consensus       337 ~~---~~L~~~l~~~~~~~~~L~~~l~~~-~~~sDYeeiKrEL~iLk~I  381 (644)
                      ..   .-+.-.|.   ..++.|+.+.++. +..-+|-+||..|++||..
T Consensus       498 a~~~~~~~~~~L~---eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~  543 (762)
T PLN03229        498 ANSQDQLMHPVLM---EKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEF  543 (762)
T ss_pred             cccccccccHHHH---HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHH
Confidence            11   00111122   2355555555543 3335999999999999965

>PF13514 AAA_27: AAA domain

Probab=82.30  E-value=1.5e+02  Score=37.46  Aligned_cols=40  Identities=28%  Similarity=0.387  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469          507 KVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA  546 (644)
Q Consensus       507 ~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~  546 (644)
                      +.+....+....++..|+.++......+..++.++..|..
T Consensus       892 ~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~  931 (1111)
T PF13514_consen  892 DELEAELEELEEELEELEEELEELQEERAELEQELEALEG  931 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4455555666666666666666666666666666666554

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=82.01  E-value=1e+02  Score=35.36  Aligned_cols=40  Identities=10%  Similarity=0.010  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006469          425 LSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY  464 (644)
Q Consensus       425 ~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~  464 (644)
                      ..+++.++..+...+-.....++.+-.....|--.|+++.
T Consensus       387 ~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~  426 (511)
T PF09787_consen  387 WNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLE  426 (511)
T ss_pred             cHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHH
Confidence            3566677777776666666666666666555555555555

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=81.56  E-value=52  Score=37.22  Aligned_cols=84  Identities=13%  Similarity=0.175  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHH-HHHHHHHHHHHHHHHHHHHHH
Q 006469          198 KTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNL-LMDEVERAQTRLLSLQREKDL  276 (644)
Q Consensus       198 ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aElem-l~~dLEra~~R~~~lE~ene~  276 (644)
                      +....+.+++..++..+.+++.+..+.-..+..+|.+|..++....-......+-.-. .=.-+..|...+.-..+.|=+
T Consensus       261 ~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs~~~p~~~s~~~~~~~~~fp~~~~aae~i~lt~r~~~q  340 (596)
T KOG4360|consen  261 EHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRSCDAPKLISQEALSHGHHFPQLSLAAEKIELTMRKNLQ  340 (596)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHhhhhCChhhHHHHHHHHhhhhhhc
Confidence            3344566777778888888888877777777778888887776654332111111000 112234455566666777777


Q ss_pred             HHHHH
Q 006469          277 LRSQL  281 (644)
Q Consensus       277 Lr~eL  281 (644)
                      |+++.
T Consensus       341 ldee~  345 (596)
T KOG4360|consen  341 LDEEA  345 (596)
T ss_pred             ccccc
Confidence            77664

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=81.44  E-value=67  Score=38.18  Aligned_cols=93  Identities=18%  Similarity=0.199  Sum_probs=55.6

Q ss_pred             hhhHHHHHHHHHHHHhcccCCcccchhhhhcchhhhchhHHH-HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          365 SKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESL-LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELT  443 (644)
Q Consensus       365 ~sDYeeiKrEL~iLk~IEf~~~d~~~~~~a~~~~~~~~LE~l-Ll~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~  443 (644)
                      .++-..|+|.|+||-.- |-..  +.... ..+.....+|-+ |...|.-|+++|.+.....+.++...+.|-+-+....
T Consensus       393 rsENaqLrRrLrilnqq-lreq--e~~~k-~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~  468 (861)
T PF15254_consen  393 RSENAQLRRRLRILNQQ-LREQ--EKAEK-TSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQK  468 (861)
T ss_pred             hhhhHHHHHHHHHHHHH-HHHH--Hhhcc-cCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH
Confidence            45677788888887643 1100  00000 011112344332 7778888888888888888888777777777777666


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 006469          444 AKINEQQKLIQKLEDDIL  461 (644)
Q Consensus       444 ~el~~~~~li~kLE~DL~  461 (644)
                      .+-..+..++..-+..|.
T Consensus       469 ~Enk~~~~~~~ekd~~l~  486 (861)
T PF15254_consen  469 EENKRLRKMFQEKDQELL  486 (861)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            666666666555554444

>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []

Probab=81.39  E-value=69  Score=32.94  Aligned_cols=31  Identities=32%  Similarity=0.509  Sum_probs=28.3

Q ss_pred             hHHHHHHHhhhhhhhHHHHHHHhhhhhcCCC
Q 006469           87 YQEEVDNLTKRAKFGENAFLNIYQKLYEAPD  117 (644)
Q Consensus        87 yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPD  117 (644)
                      -|.|||.+-|+-...=..|=.+|.++..+.-
T Consensus         6 LQ~Eid~~lKkv~EG~~~F~~i~~K~~~~~n   36 (233)
T PF04065_consen    6 LQQEIDRTLKKVQEGVEEFDEIYEKVESATN   36 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence            5899999999999999999999999997653

This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=81.30  E-value=1.2e+02  Score=35.88  Aligned_cols=50  Identities=24%  Similarity=0.194  Sum_probs=34.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhhhc
Q 006469          504 SMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQD  560 (644)
Q Consensus       504 siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkirylqs  560 (644)
                      .-+.-..++..++.....+++.++.........+..|+..|+.       |.+++.+
T Consensus       573 ~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~-------kle~~k~  622 (698)
T KOG0978|consen  573 IELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKR-------KLERLKK  622 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhcc
Confidence            3444556666677777777777777777777777777777777       7777543

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=80.92  E-value=51  Score=31.13  Aligned_cols=43  Identities=23%  Similarity=0.320  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 006469          203 LQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE  245 (644)
Q Consensus       203 ~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~  245 (644)
                      +..++..+..++..+...++..+..+..++..+...+++|..+
T Consensus        92 ~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e  134 (151)
T PF11559_consen   92 AEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHE  134 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455556666666666666666666665555555555555444

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=80.72  E-value=73  Score=32.85  Aligned_cols=65  Identities=17%  Similarity=0.172  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHH
Q 006469          196 NQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEV  260 (644)
Q Consensus       196 ~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dL  260 (644)
                      +.|-+.--.+-|+.|..+|..++..++.|.+.+.....++.-.+.+.+....-..-.+..|..|+
T Consensus        36 l~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddl  100 (333)
T KOG1853|consen   36 LNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDL  100 (333)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445667788888999999999999888777766666666665443322233334444444

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=80.70  E-value=1.4e+02  Score=36.07  Aligned_cols=31  Identities=23%  Similarity=0.273  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChhh
Q 006469          337 EIKKLNALLIEKEAALEDMKKELQARPTSKM  367 (644)
Q Consensus       337 ~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sD  367 (644)
                      +++-.-..|.+....|..|-.+|.++.++.|
T Consensus       734 EiaaAA~KLAECQeTI~sLGkQLksLa~~~d  764 (769)
T PF05911_consen  734 EIAAAAEKLAECQETIASLGKQLKSLATPED  764 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCChhh
Confidence            3444445567777777888888877744433

The function of this family is unknown.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=80.56  E-value=1.4e+02  Score=35.91  Aligned_cols=25  Identities=16%  Similarity=0.258  Sum_probs=11.9

Q ss_pred             hhHhhHhHHHHHHHHHHHHhHhhhh
Q 006469          135 LESENRKMKIELEEYRTEATHLKNQ  159 (644)
Q Consensus       135 le~e~~~Lk~el~~l~~e~a~lk~q  159 (644)
                      ++.-+.-|+.+.+..-+++..+++.
T Consensus       563 i~~rv~~Lk~~~e~Ql~~L~~l~e~  587 (717)
T PF10168_consen  563 IQRRVKLLKQQKEQQLKELQELQEE  587 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555555555555554443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	644
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-15
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-07
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	4e-05
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	6e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	1e-04
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 81.1 bits (199), Expect = 6e-16
 Identities = 97/653 (14%), Positives = 189/653 (28%), Gaps = 180/653 (27%)

Query: 26  NFWKDFD----LEKEKSLL-----DE-LGLK------------IAENQENS--------- 54
            F  +FD     +  KS+L     D  +  K            +   QE           
Sbjct: 28  AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87

Query: 55  QKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYE 114
           + N + L    +  ++  P     ++         +     K        +L + Q L E
Sbjct: 88  RINYKFLMSPIKTEQRQ-PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146

Query: 115 A-PDPY-----------PALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQST 162
             P                +A       K+ + + + +   + L+   +  T L+  Q  
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKV-QCKMDFKIFWLNLKNCNSPETVLEMLQKL 205

Query: 163 IRRLEERNRQLEQQMEEKVKEIVEIKQ--RGLAEENQ--KTLEILQEREQALQDQLRQAK 218
           + +++                I  I+   R L +       L +L               
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL--------------- 250

Query: 219 DSVATMQKLHELA-QSQ-LFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDL 276
            +V   +  +      + L   R +   + ++  +  ++ +D         L+    K L
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT----LTPDEVKSL 306

Query: 277 LRSQL-QSAND---EAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNERE 332
           L   L     D   E  + N   L               II+E   +          +  
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRL--------------SIIAESIRDGLAT-----WDNW 347

Query: 333 QHMNEIKKLNALLIEKEAALEDMK-KELQARPTSKMVDDL---RKKVKI----LQAVGYN 384
           +H+N   KL  ++   E++L  ++  E +     KM D L        I    L  +   
Sbjct: 348 KHVN-CDKLTTII---ESSLNVLEPAEYR-----KMFDRLSVFPPSAHIPTILLSLI--- 395

Query: 385 SIEAEDWEVATNDEEMSKMESL----LLDKNRKME----HELTQ-LKVKLSEKTSLLETA 435
                 W      + M  +  L    L++K  K        +   LKVKL  + +L    
Sbjct: 396 ------WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL---- 445

Query: 436 EGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAG----GTELSEKA 491
                         + ++     +I K + S D      D +  S  G      E  E+ 
Sbjct: 446 -------------HRSIVDH--YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490

Query: 492 DK-KHTYPDQDQSSMLKVICNQRDRF-RARLRETEEEVRQLKEKIGVLTAELEKTK---A 546
              +  + D               RF   ++R            +  L  +L+  K    
Sbjct: 491 TLFRMVFLD--------------FRFLEQKIRHDSTAWNASGSILNTLQ-QLKFYKPYIC 535

Query: 547 DNVQLYGK-----IRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMY 594
           DN   Y +     + F+       + S    KY + L     ++ E+ +++ +
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICS----KYTDLLRIALMAEDEAIFEEAH 584

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.0 bits (160), Expect = 3e-11
 Identities = 59/383 (15%), Positives = 119/383 (31%), Gaps = 97/383 (25%)

Query: 25  SNFWKDFDLE-------KEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKL 77
           +  W  F+L        + K + D L          +      L   +      +P+E  
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLS--------AATTTHISLDHHSMTL---TPDEVK 304

Query: 78  SLFNSLLKGYQEEVDNLTKRAKFGENAFLNI-YQKL-YEAPDPYP-ALASIAE------- 127
           SL                   K+     L+   Q L  E     P  L+ IAE       
Sbjct: 305 SLL-----------------LKY-----LDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342

Query: 128 --QDLKLSELESENRKMKIELE-----EYRTEATHL----KNQQSTIRRLEERNRQLEQQ 176
              + K    +     ++  L      EYR     L     +       L      +   
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS----LIWFD 398

Query: 177 MEEKVKEIV--EIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQ 234
           + +    +V  ++ +  L E+  K   I      ++     + K  +     LH      
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTI------SIPSIYLELKVKLENEYALHRSIVDH 452

Query: 235 LFEVRAQSDEERVAKQSEVNLL-------MDEVERAQTRLLSLQREK--DL--LRSQLQ- 282
            + +    D + +                +  +E  +   ++L R    D   L  +++ 
Sbjct: 453 -YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE--RMTLFRMVFLDFRFLEQKIRH 509

Query: 283 --SANDEAGSRNSDTLDSNSYLE---NSLSAKEKIISELNSELHNIETALSNEREQHMNE 337
             +A + +GS  +       Y     ++    E++++ +   L  IE  L     ++ + 
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI--CSKYTDL 567

Query: 338 IKKLNALLIEKEAALEDMKKELQ 360
           ++   AL+ E EA  E+  K++Q
Sbjct: 568 LRI--ALMAEDEAIFEEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 1e-07
 Identities = 33/225 (14%), Positives = 72/225 (32%), Gaps = 57/225 (25%)

Query: 20  PVSVISNFWKDFDLEKE---------KSLLDE-----------LGLKIAENQENSQKNRR 59
           P  ++S  W D                SL+++           + L++    EN     R
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447

Query: 60  KLAESTRDFKKASPEEKLSL------FNSLLKGYQEEVDNLTKRAKFGENAFLN---IYQ 110
            + +     K    ++ +        ++ +  G+  +     +R       FL+   + Q
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHI--GHHLKNIEHPERMTLFRMVFLDFRFLEQ 505

Query: 111 KLYEAPDPYPALASIAE--QDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEE 168
           K+      + A  SI    Q LK                 Y+    ++ +      RL  
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKF----------------YK---PYICDNDPKYERLVN 546

Query: 169 RNRQLEQQMEEKV--KEIVEIKQRGLAEENQKTLEILQEREQALQ 211
                  ++EE +   +  ++ +  L  E++    I +E  + +Q
Sbjct: 547 AILDFLPKIEENLICSKYTDLLRIALMAEDE---AIFEEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 6e-05
 Identities = 47/339 (13%), Positives = 96/339 (28%), Gaps = 112/339 (33%)

Query: 321 HNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQA 380
           H+++     E +    +I  +           +            K V D+ K +     
Sbjct: 5   HHMDFET-GEHQYQYKDILSVF---------EDAFVDNFDC----KDVQDMPKSI----- 45

Query: 381 VGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIA 440
                              +SK E   +D     +  ++           L  T   K  
Sbjct: 46  -------------------LSKEE---IDHIIMSKDAVSGTLR-------LFWTLLSK-- 74

Query: 441 ELTAKINEQQKLIQKLEDDIL-KGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPD 499
                   Q++++QK  +++L   Y            + L     TE  + +     Y +
Sbjct: 75  --------QEEMVQKFVEEVLRINY-----------KF-LMSPIKTEQRQPSMMTRMYIE 114

Query: 500 QDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRF-- 557
           Q        + N    F        +   +L++ +      LE   A NV + G +    
Sbjct: 115 Q-----RDRLYNDNQVFAKYNVSRLQPYLKLRQAL------LELRPAKNVLIDGVLGSGK 163

Query: 558 ------------VQDYNNEKV--ISRGSKKYAEDLESGFTSDIESKYKKMYEDDINPFAA 603
                       VQ   + K+  ++  +    E +       +E   +K+       + +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV-------LE-MLQKLLYQIDPNWTS 215

Query: 604 FSKKERDQRYKELGIRDRITLSSGRFLLGNKYN--LLYL 640
            S    + + +   I+  +     R L    Y   LL L
Sbjct: 216 RSDHSSNIKLRIHSIQAELR----RLLKSKPYENCLLVL 250

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 78.0 bits (192), Expect = 5e-15
 Identities = 60/302 (19%), Positives = 126/302 (41%), Gaps = 21/302 (6%)

Query: 163  IRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVA 222
            ++  +E  ++ +++ ++   E+ E++Q+      +K   +LQE+ QA  +   +A++   
Sbjct: 859  MQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKN--LLQEKLQAETELYAEAEEMRV 916

Query: 223  TMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQ 282
             +    +  +  L E+ A+ +EE    +     L  E ++ Q ++L L+ + +   +  Q
Sbjct: 917  RLAAKKQELEEILHEMEARIEEE----EERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQ 972

Query: 283  SANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLN 342
                E  + +         +E+ +   E   ++L  E   +E  +S+       E +K  
Sbjct: 973  KLQLEKVTADGKIKK----MEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK 1028

Query: 343  ALLIEKEAALEDMKKELQAR--PTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEM 400
             L   K    E M  EL+ R     K   +L K  +         +E E  ++     E+
Sbjct: 1029 NLTKLKNK-HESMISELEVRLKKEEKSRQELEKIKR--------KLEGESSDLHEQIAEL 1079

Query: 401  SKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDI 460
                + L  +  K E EL     +L ++TS    A  KI EL + I++ Q+ ++  +   
Sbjct: 1080 QAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAAR 1139

Query: 461  LK 462
             K
Sbjct: 1140 NK 1141

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 76.4 bits (188), Expect = 1e-14
 Identities = 56/322 (17%), Positives = 125/322 (38%), Gaps = 19/322 (5%)

Query: 131  KLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQR 190
            +L ELE ++ ++  E    + +        +    +  R    +Q++EE + E+ E +  
Sbjct: 879  ELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEM-EARIE 937

Query: 191  GLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQ 250
               E +Q+     ++ +Q + D   Q ++  A  QKL     +   +++ + +++ +  +
Sbjct: 938  EEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIK-KMEDDILIME 996

Query: 251  SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKE 310
             + N L  E +  + R+  L         + ++         S   +    LE  L  +E
Sbjct: 997  DQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISE----LEVRLKKEE 1052

Query: 311  KIISELNSELHNIET---ALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKM 367
            K   EL      +E     L  +  +   +I +L A L +KE  L+     L+    +  
Sbjct: 1053 KSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDE--TSQ 1110

Query: 368  VDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSE 427
             ++  KK++ L++     I     ++ +     +K E     + R +  EL  LK +L +
Sbjct: 1111 KNNALKKIRELES----HISDLQEDLESEKAARNKAEK----QKRDLSEELEALKTELED 1162

Query: 428  KTSLLETAEGKIAELTAKINEQ 449
                  T +          +++
Sbjct: 1163 TLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 75.3 bits (185), Expect = 4e-14
 Identities = 49/258 (18%), Positives = 113/258 (43%), Gaps = 18/258 (6%)

Query: 125  IAEQDLKLSELESENRKMKIELEEYRTEATHLKNQ----QSTIRRLEERNRQLEQQMEEK 180
            + E + ++ E E  +++++ E ++ + +   L+ Q    ++  ++L+      + ++++ 
Sbjct: 929  LHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKM 988

Query: 181  VKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRA 240
              +I+ ++ +    +  K  ++L+ER   L   L + ++    + KL    +S + E+  
Sbjct: 989  EDDILIMEDQ--NNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEV 1046

Query: 241  QSDEERVAKQ---SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLD 297
            +  +E  ++Q        L  E      ++  LQ +   L++QL    +E  +  +   D
Sbjct: 1047 RLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLED 1106

Query: 298  SNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKK 357
              S   N+L    K I EL S + +++  L +E+       K+   L       LE +K 
Sbjct: 1107 ETSQKNNAL----KKIRELESHISDLQEDLESEKAARNKAEKQKRDL----SEELEALKT 1158

Query: 358  ELQ-ARPTSKMVDDLRKK 374
            EL+    T+    +LR  
Sbjct: 1159 ELEDTLDTTATQQELRGS 1176

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 65.6 bits (160), Expect = 3e-11
 Identities = 73/431 (16%), Positives = 153/431 (35%), Gaps = 56/431 (12%)

Query: 140  RKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIV-----EIKQRGLAE 194
               +    + + +   +   Q  +R            +   +  ++     E + +   E
Sbjct: 805  YLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDE 864

Query: 195  ENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVN 254
            E Q+T E  Q+ E  L++  ++          L E  Q++  E+ A+++E RV   ++  
Sbjct: 865  ELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAET-ELYAEAEEMRVRLAAKKQ 923

Query: 255  LLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIIS 314
             L + +   + R+   +        QLQ+   +   +  D       LE  L  +E    
Sbjct: 924  ELEEILHEMEARIEEEEER----SQQLQAEKKKMQQQMLD-------LEEQLEEEEAARQ 972

Query: 315  ELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKK 374
            +L  E    +  +    +  +    + N L  E++  LE+   +L        + +  +K
Sbjct: 973  KLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKL-LEERVSDLTTN-----LAEEEEK 1026

Query: 375  VKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLET 434
             K L  +  N  E+   E+    ++  K    L    RK+E E + L  +++E  + +  
Sbjct: 1027 AKNLTKL-KNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE 1085

Query: 435  AEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKK 494
             +   A+L  K  E Q  + +LED+                      +      +K  + 
Sbjct: 1086 LK---AQLAKKEEELQAALARLEDE---------------------TSQKNNALKKIREL 1121

Query: 495  HTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGK 554
                 +   S L+      +  +A   + E++ R L E++  L  ELE T          
Sbjct: 1122 -----ESHISDLQ---EDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQEL 1173

Query: 555  IRFVQDYNNEK 565
                   +++K
Sbjct: 1174 RGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 49.8 bits (119), Expect = 3e-06
 Identities = 52/281 (18%), Positives = 104/281 (37%), Gaps = 22/281 (7%)

Query: 306  LSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNAL--LIEKEAALEDMKKELQARP 363
            + AK++ +          E  L    ++H    ++ N L   ++ E  L    +E++ R 
Sbjct: 859  MQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRL 918

Query: 364  TSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKV 423
             +K  + L + +  ++A                 EE  +    L  + +KM+ ++  L+ 
Sbjct: 919  AAKKQE-LEEILHEMEA---------------RIEEEEERSQQLQAEKKKMQQQMLDLEE 962

Query: 424  KLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAG 483
            +L E+ +  +  + +      KI + +  I  +ED   K    +        D   + A 
Sbjct: 963  QLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAE 1022

Query: 484  GTELSEKADK---KHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAE 540
              E ++   K   KH     +    LK     R       R+ E E   L E+I  L A+
Sbjct: 1023 EEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQ 1082

Query: 541  LEKTKADNVQLYGKI-RFVQDYNNEKVISRGSKKYAEDLES 580
            + + KA   +   ++   +    +E      + K   +LES
Sbjct: 1083 IAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELES 1123

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 45.2 bits (107), Expect = 7e-05
 Identities = 27/168 (16%), Positives = 65/168 (38%), Gaps = 13/168 (7%)

Query: 32   DLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEV 91
            +L K K+  + +  ++    +  +K+R++L +  R       E + S  +  +   Q ++
Sbjct: 1029 NLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKL-----EGESSDLHEQIAELQAQI 1083

Query: 92   DNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRT 151
              L  +    E        +L +        +       K+ ELES    ++ +LE  + 
Sbjct: 1084 AELKAQLAKKEEELQAALARLEDE------TSQKNNALKKIRELESHISDLQEDLESEKA 1137

Query: 152  EATHLKNQQSTIRR-LEERNRQLEQQMEEKVKEIVEIKQRGLAEENQK 198
                 + Q+  +   LE    +LE  ++    +  E++     +++ K
Sbjct: 1138 ARNKAEKQKRDLSEELEALKTELEDTLDTTATQQ-ELRGSDYKDDDDK 1184

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 66.7 bits (163), Expect = 2e-11
 Identities = 39/237 (16%), Positives = 84/237 (35%), Gaps = 20/237 (8%)

Query: 131  KLSELESENRKMKIELE-EYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQ 189
            K   +  E++ + I+          H       I  L+   R++  + E K  +I     
Sbjct: 857  KYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSV 916

Query: 190  RGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRA------QSD 243
                + +      + + ++ + +Q ++ K  +  M  L     ++  ++R+       S+
Sbjct: 917  ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSE 976

Query: 244  EERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLE 303
            EE     + V  L +E+ + +  L   Q EK  +         E     S+       L+
Sbjct: 977  EEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE-------LK 1029

Query: 304  NSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQ 360
               +  +    ELN  +H+    ++   E+ + E  K      + E  L D +   Q
Sbjct: 1030 EQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETK------QLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 51.6 bits (124), Expect = 7e-07
 Identities = 49/391 (12%), Positives = 114/391 (29%), Gaps = 72/391 (18%)

Query: 97   RAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKM---KI--------E 145
            R  + E  F + Y+ L +  D         +  L+   L+ +  +    KI         
Sbjct: 701  RWTYQE--FFSRYRVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAY 758

Query: 146  LEEYRTE-----ATHLKNQQSTIRRLEERNRQLEQQ-----------MEEKVKEIVEIKQ 189
            LE+ R +        +   Q TIR    R + +  +             +       +++
Sbjct: 759  LEKIRADKLRAACIRI---QKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYATFLRR 815

Query: 190  RGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAK 249
               A   QK   +   R++    +             L       +         ++  +
Sbjct: 816  TRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVR 875

Query: 250  QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAK 309
                 +      +A   L    R   + + +L+    EA S            +      
Sbjct: 876  GWLARVHYHRTLKAIVYLQCCYRRM-MAKRELKKLKIEARSVER--------YKKLHIGL 926

Query: 310  EKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVD 369
            E  I +L  ++        +  E+    +  L      +   L    + L+   + +   
Sbjct: 927  ENKIMQLQRKIDEQNKEYKSLLEK----MNNLEITYSTETEKLRSDVERLRM--SEEEAK 980

Query: 370  DLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKT 429
            +   +V  LQ            E+A   +E+ + ++    + + +E    + K +  +  
Sbjct: 981  NATNRVLSLQE-----------EIAKLRKELHQTQT----EKKTIEEWADKYKHETEQL- 1024

Query: 430  SLLETAEGKIAELTAKINEQQKLIQKLEDDI 460
                     ++EL  +    +   ++L   I
Sbjct: 1025 ---------VSELKEQNTLLKTEKEELNRRI 1046

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863

 Score = 45.7 bits (107), Expect = 4e-05
 Identities = 51/406 (12%), Positives = 128/406 (31%), Gaps = 23/406 (5%)

Query: 133 SELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGL 192
            +LE      ++       E   L+   +T++     + +      E            +
Sbjct: 287 QKLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSE------GKMVSDI 340

Query: 193 AEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQS-----QLFEVRAQSDEERV 247
                   +  +  E+ L +++R+ +      +K  + A          E   Q  +   
Sbjct: 341 NNAWGGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAMLQQKDYET 400

Query: 248 AKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLS 307
           A  SE+  L+ + E  ++ L + Q   + + +  Q  N+     +         + +   
Sbjct: 401 ATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWD 460

Query: 308 AKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKM 367
               +  +    L   E  L    + ++   K+        E A+ED++       T + 
Sbjct: 461 NLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFI-VHTIEE 519

Query: 368 VDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSE 427
           +  L    +  +A    ++   D E        +++  ++   +  M        +   E
Sbjct: 520 IQGLTTAHEQFKA----TLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQE 575

Query: 428 KTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTEL 487
                E     +      + E+    Q+ E    +       + NV   W +      E 
Sbjct: 576 INGKWEHVRQLVPRRDQALMEEHARQQQNE----RLRKQFGAQANVIGPW-IQTK--MEE 628

Query: 488 SEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEK 533
             +   +     +DQ + L+        ++ ++ + E + +Q++E 
Sbjct: 629 IGRISIEMHGTLEDQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQEA 674

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 45.7 bits (108), Expect = 6e-05
 Identities = 36/279 (12%), Positives = 83/279 (29%), Gaps = 41/279 (14%)

Query: 118  PYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRR------------ 165
               AL  +  +  +  +LE+          +      +         R            
Sbjct: 1814 SPEALFQVGSEFTRNLDLENPQYIAPPVFIQEAEIMGNNLMAIPPSHRDAVVSSLVYIHQ 1873

Query: 166  -LEERNRQLEQQM--------EEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQ 216
             + E N +L ++            +  I ++    L  E +  LE  Q        +LR 
Sbjct: 1874 TIGEANIRLLKRQGRQNYVTPRHYLDFINQVVL--LINEKRDQLEEEQLHLNIGLKKLRD 1931

Query: 217  AKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDL 276
             +  V  +Q        +L             K  + N  + ++ + Q      Q++   
Sbjct: 1932 TEAQVKDLQVSLAQKNREL-----------DVKNEQANQKLKQMVQDQQAAEIKQKDARE 1980

Query: 277  LRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMN 336
            L+ QL   N E   +      ++           + + +L +  + ++          + 
Sbjct: 1981 LQVQLDVRNKEIAVQKVKA-YADLEKAEPTGPLREEVEQLENAANELKLKQDEIVAT-IT 2038

Query: 337  EIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKV 375
             ++K  A   E+ A L    ++++          ++ KV
Sbjct: 2039 ALEKSIATYKEEYATLIRETEQIK-----TESSKVKNKV 2072

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 13/36 (36%)

Query: 88  QEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALA 123
           ++ +  L       + +      KLY A D  PALA
Sbjct: 19  KQALKKL-------QASL-----KLY-ADDSAPALA 41

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 39/288 (13%), Positives = 96/288 (33%), Gaps = 37/288 (12%)

Query: 172  QLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELA 231
            ++E+  E+++            +   + ++ + +++ +L+   R   DS+ ++Q      
Sbjct: 753  RIEEAREQRLGSEQTKSDY--LKRANELVQWINDKQASLE--SRDFGDSIESVQSF---- 804

Query: 232  QSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSR 291
                  + A     +  K++E      EV   +    SLQ +  L++ +   A       
Sbjct: 805  ------MNAH----KEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPN 854

Query: 292  NSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAA 351
                      ++++ SA EK   E    L                 ++K N +L + E  
Sbjct: 855  ---------EIDSTWSALEKAEQEHAEALRIELKRQKKIAV----LLQKYNRILKKLENW 901

Query: 352  LEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKN 411
                   L +  T   +  ++ K+K L+A        E    +     ++++  L  +  
Sbjct: 902  ATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGV 961

Query: 412  RKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDD 459
             ++         +           +         +  + + +QK+ED 
Sbjct: 962  PELTERKDTFFAQQ------WTGVKSSAETYKNTLLAELERLQKIEDL 1003

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	644
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.3
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.16
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.67
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.2
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	96.95
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.92
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	96.74
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	96.71
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.21
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	95.43
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	94.77
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	94.47
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	94.25
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	93.95
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	93.66
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	92.6
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	92.55
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	91.76
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	91.65
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	90.19
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	90.18
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	89.72
1ik9_A	213	DNA repair protein XRCC4; DNA END joining, double-	89.15
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	88.7
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	87.99
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	87.36
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	87.25
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	86.29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	86.25
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	85.81
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	84.8
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	84.53
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	84.0
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	83.97
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	83.6
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	82.57
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	82.49
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	82.39
3bas_A	89	Myosin heavy chain, striated muscle/general contro	81.47
1gk4_A	84	Vimentin; intermediate filament, dimer, parallel c	81.25
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	81.01

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.30  E-value=1.7e-06  Score=105.87  Aligned_cols=19  Identities=16%  Similarity=0.158  Sum_probs=9.1

Q ss_pred             hhHhHHHHHHHHHHHHhHh
Q 006469          138 ENRKMKIELEEYRTEATHL  156 (644)
Q Consensus       138 e~~~Lk~el~~l~~e~a~l  156 (644)
                      ++..|+.++.+++..+..+
T Consensus       858 El~~L~~eL~el~~~L~~l  876 (1184)
T 1i84_S          858 EMQAKDEELQRTKERQQKA  876 (1184)
T ss_dssp             HCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4444445555544444443

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.16  E-value=4.3e-06  Score=102.27  Aligned_cols=22  Identities=18%  Similarity=0.197  Sum_probs=10.6

Q ss_pred             hhHhhHhHHHHHHHHHHHHhHh
Q 006469          135 LESENRKMKIELEEYRTEATHL  156 (644)
Q Consensus       135 le~e~~~Lk~el~~l~~e~a~l  156 (644)
                      ++.++..++..+..++..+.++
T Consensus       862 L~~eL~el~~~L~~le~~l~el  883 (1184)
T 1i84_S          862 KDEELQRTKERQQKAEAELKEL  883 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4444445555555554444443

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.67  E-value=0.004  Score=59.78  Aligned_cols=88  Identities=15%  Similarity=0.111  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH-------HHhhHHhHHHHHHHHHHHHHHHH
Q 006469          196 NQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE-------RVAKQSEVNLLMDEVERAQTRLL  268 (644)
Q Consensus       196 ~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~-------~~a~~aEleml~~dLEra~~R~~  268 (644)
                      +++-+..-.+-|..|...|..+++.++.|+..+.....++..|+.++...       ......|+..+....+....++-
T Consensus        33 l~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ir  112 (189)
T 2v71_A           33 LVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVR  112 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445667778888888888888888888888888888888887655       33456777777777777788888


Q ss_pred             HHHHHHHHHHHHHHh
Q 006469          269 SLQREKDLLRSQLQS  283 (644)
Q Consensus       269 ~lE~ene~Lr~eL~~  283 (644)
                      .||..|+.|-...-.
T Consensus       113 eLEq~NDdlEr~~R~  127 (189)
T 2v71_A          113 ELEQANDDLERAKRA  127 (189)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHH
Confidence            888887777665443

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.20  E-value=0.11  Score=52.42  Aligned_cols=132  Identities=17%  Similarity=0.183  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006469          208 QALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE  287 (644)
Q Consensus       208 ~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~  287 (644)
                      .++..++..++..+..++...+..+.++...+         ..-|+..+..+++.+..++..+|.+.-.+-.++...   
T Consensus        56 ~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~---------~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~---  123 (256)
T 3na7_A           56 LALKLQVSKNEQTLQDTNAKIASIQKKMSEIK---------SERELRSLNIEEDIAKERSNQANREIENLQNEIKRK---  123 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS---------SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            34555666667777777777776666664432         234566666666666667777776666555554332   


Q ss_pred             cCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh
Q 006469          288 AGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKM  367 (644)
Q Consensus       288 ~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sD  367 (644)
                                            ...+..+...+..+...+...+......+..++..+..+......+...+.. +-..-
T Consensus       124 ----------------------~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~~-~lL~~  180 (256)
T 3na7_A          124 ----------------------SEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEP-KIYSF  180 (256)
T ss_dssp             ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCH-HHHHH
T ss_pred             ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-HHHHH
Confidence                                  2223334444444444444444444445555554444444444444433321 11357


Q ss_pred             HHHHHHH
Q 006469          368 VDDLRKK  374 (644)
Q Consensus       368 YeeiKrE  374 (644)
                      |+-|++-
T Consensus       181 Yerir~~  187 (256)
T 3na7_A          181 YERIRRW  187 (256)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8887764

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=96.95  E-value=0.0064  Score=51.23  Aligned_cols=78  Identities=18%  Similarity=0.293  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH---HHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469          209 ALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE---RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN  285 (644)
Q Consensus       209 ~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~---~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~  285 (644)
                      +|+.|+..+......+...++.++..+.+++.+|+.+   ++...+++..+..|++.|..--.+||++++.|+++|...+
T Consensus         4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk   83 (86)
T 3swk_A            4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK   83 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6788888888888888888999999999999999988   5667789999999999999999999999999999998765


Q ss_pred             h
Q 006469          286 D  286 (644)
Q Consensus       286 s  286 (644)
                      .
T Consensus        84 k   84 (86)
T 3swk_A           84 K   84 (86)
T ss_dssp             T
T ss_pred             h
Confidence            3

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.92  E-value=0.41  Score=48.15  Aligned_cols=38  Identities=21%  Similarity=0.277  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhh
Q 006469          517 RARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRF  557 (644)
Q Consensus       517 r~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkiry  557 (644)
                      ...+.+++.++.........+..   .+-.+=+..|++||-
T Consensus       149 ~~~~~e~~~e~~~l~~~r~~l~~---~i~~~lL~~Yerir~  186 (256)
T 3na7_A          149 ENEVKNIKETQQIIFKKKEDLVE---KTEPKIYSFYERIRR  186 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH---TSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Confidence            33444444444444444444433   455688899999995

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=96.71  E-value=0.4  Score=45.97  Aligned_cols=56  Identities=7%  Similarity=0.086  Sum_probs=41.0

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469          407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILK  462 (644)
Q Consensus       407 Ll~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~  462 (644)
                      |...+..|...|..|...+++++.........+..+...+...=.-|+-||.+|..
T Consensus       100 l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E  155 (189)
T 2v71_A          100 TRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE  155 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556667777777777777777777777777777777777777777777777764

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.21  E-value=1.7  Score=57.80  Aligned_cols=84  Identities=15%  Similarity=0.147  Sum_probs=45.8

Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 006469          249 KQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALS  328 (644)
Q Consensus       249 ~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~  328 (644)
                      ..+++...+..|..++..+.+++.+.+.|+.+++.+........    ......+..+...++-|.-|.+|..|+..+..
T Consensus      2019 ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~----~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~ 2094 (3245)
T 3vkg_A         2019 LENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIK----TESSKVKNKVDRSIALLDNLNSERGRWEQQSE 2094 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhccccHHHHHH
Confidence            34555566666666666666666666666666665544321000    00001223344445557777777777777776


Q ss_pred             HHHHHHHH
Q 006469          329 NEREQHMN  336 (644)
Q Consensus       329 ~~r~~~~~  336 (644)
                      ........
T Consensus      2095 ~l~~~~~~ 2102 (3245)
T 3vkg_A         2095 NFNTQMST 2102 (3245)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            66554433

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=95.43  E-value=1.7  Score=40.66  Aligned_cols=75  Identities=9%  Similarity=0.110  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006469          209 ALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE  287 (644)
Q Consensus       209 ~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~  287 (644)
                      ++...+..++..+.+|+..+...+..-..+    +.+.....+.++--.++.-.+..++.+++.++..|..+|...+..
T Consensus        38 El~k~~~~~E~~~rELq~~~~~L~~~k~~L----eke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~  112 (168)
T 3o0z_A           38 EMSKSISQLESLNRELQERNRILENSKSQT----DKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHN  112 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444333322222    223334444455555555566666677777777777776654443

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=94.77  E-value=0.32  Score=42.66  Aligned_cols=66  Identities=17%  Similarity=0.294  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          215 RQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQ  280 (644)
Q Consensus       215 ~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~e  280 (644)
                      +....++.+|......++..|.+++..+.+-..+...+|.-|+.+-++...++..|+++|+.|.+.
T Consensus        41 E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~Gk  106 (112)
T 1x79_B           41 EDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGK  106 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhh
Confidence            334445555555555555555566555555666678899999999999999999999999999865

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=94.47  E-value=15  Score=49.27  Aligned_cols=12  Identities=33%  Similarity=0.470  Sum_probs=6.5

Q ss_pred             hhhHHHhhhhhh
Q 006469          619 RDRITLSSGRFL  630 (644)
Q Consensus       619 ~er~~l~~~r~v  630 (644)
                      +||++..+.+||
T Consensus      2606 pDr~~~a~~~fV 2617 (3245)
T 3vkg_A         2606 SDRVLQYSHSFV 2617 (3245)
T ss_dssp             GGGHHHHHHHHH
T ss_pred             ccHHHHHHHHHH
Confidence            355555555554

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=94.25  E-value=0.9  Score=54.86  Aligned_cols=36  Identities=31%  Similarity=0.434  Sum_probs=20.7

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469          250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN  285 (644)
Q Consensus       250 ~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~  285 (644)
                      .++++.+..+++.+..++..++.+++.|+.++..+.
T Consensus       969 l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ 1004 (1080)
T 2dfs_A          969 VERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQ 1004 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555556666666666666666655543

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=93.95  E-value=0.83  Score=55.15  Aligned_cols=34  Identities=15%  Similarity=0.113  Sum_probs=25.6

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIA  440 (644)
Q Consensus       407 Ll~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~  440 (644)
                      |.++...|+++++.||.+.++++..+...+++..
T Consensus      1021 L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~~~~ 1054 (1080)
T 2dfs_A         1021 TEQLVSELKEQNTLLKTEKEELNRRIHDQAKEIT 1054 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5577778888888888888888877766665543

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=93.66  E-value=3.6  Score=36.57  Aligned_cols=82  Identities=22%  Similarity=0.350  Sum_probs=60.3

Q ss_pred             hhHHHHHHHHHHHHhcccCCcccchhhhhcchhhhchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          366 KMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAK  445 (644)
Q Consensus       366 sDYeeiKrEL~iLk~IEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~e  445 (644)
                      .+.++++-||+|.=.+              ......++++ |.-||--.+.+|..||..+..++..++..+..+..-..+
T Consensus        25 ~eleEnqeEL~iVgkM--------------L~EEqgKVDQ-lqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~q   89 (167)
T 4gkw_A           25 KQLEENQEELEIVGNM--------------LREEQGKVDQ-LQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQ   89 (167)
T ss_dssp             HHHHHHHHHHHHHHHH--------------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH--------------HHHHHhhHHH-HHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHH
Confidence            4567777777776554              1233457788 889999999999999999999999999988888776665


Q ss_pred             HHHHHHHHH---HHHHHHHh
Q 006469          446 INEQQKLIQ---KLEDDILK  462 (644)
Q Consensus       446 l~~~~~li~---kLE~DL~~  462 (644)
                      -..+.--+.   .||.||-.
T Consensus        90 QnQQSlDiRKLrELEADLKE  109 (167)
T 4gkw_A           90 QNQQSLDMRKLGELEADLKE  109 (167)
T ss_dssp             HHHHHHHHHHTHHHHHTHHH
T ss_pred             HhHhhhhHHHHHHHHhHHhh
Confidence            555544443   46777753

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=92.60  E-value=6.7  Score=36.69  Aligned_cols=123  Identities=15%  Similarity=0.199  Sum_probs=87.4

Q ss_pred             hchhHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCC
Q 006469          400 MSKMESLLLDKNRKMEHE---LTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDD  476 (644)
Q Consensus       400 ~~~LE~lLl~kNrkL~~e---Lt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~  476 (644)
                      ...||.-|.+-|.+|..+   -+.+|.++.++...+..+......+...+..+..--..|+.++..++.           
T Consensus         8 i~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa-----------   76 (168)
T 3o0z_A            8 LSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQA-----------   76 (168)
T ss_dssp             --CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence            345677777777777654   456777777777777777777777777777777777777777776653           


Q ss_pred             CccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHh
Q 006469          477 WDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIR  556 (644)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkir  556 (644)
                                                  .|.--..-|.+--..+.+|+..+..+...+..++.-...+..||-+|-|+|-
T Consensus        77 ----------------------------~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~  128 (168)
T 3o0z_A           77 ----------------------------ILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLN  128 (168)
T ss_dssp             ----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                        3444455566666777788888888888888888888888888888888887


Q ss_pred             hhhcc
Q 006469          557 FVQDY  561 (644)
Q Consensus       557 ylqsy  561 (644)
                      -|+-.
T Consensus       129 ~lEKe  133 (168)
T 3o0z_A          129 HSEKE  133 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76653

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=92.55  E-value=2.5  Score=36.60  Aligned_cols=85  Identities=19%  Similarity=0.235  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcch
Q 006469          424 KLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQS  503 (644)
Q Consensus       424 ~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (644)
                      +++.|..++..+++.+.....++.+++..+.++..++++                                         
T Consensus        25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~-----------------------------------------   63 (110)
T 2v4h_A           25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMET-----------------------------------------   63 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH-----------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------
Confidence            455566666666666666777777777777777776643                                         


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhh
Q 006469          504 SMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQL  551 (644)
Q Consensus       504 siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kL  551 (644)
                        +|++..|-|=|+.--.--...--+...++..|..++..|+..|-+|
T Consensus        64 --I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l  109 (110)
T 2v4h_A           64 --VPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL  109 (110)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             --HHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence              5667777777776666666666666677777777777777755443

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=91.76  E-value=1.4  Score=48.02  Aligned_cols=52  Identities=17%  Similarity=0.149  Sum_probs=40.0

Q ss_pred             hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 006469          415 EHELT-QLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSS  466 (644)
Q Consensus       415 ~~eLt-~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~  466 (644)
                      -++++ +||..+..|+.++...-..+..|+.-|++|...|++||.||......
T Consensus       108 ynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirs  160 (562)
T 3ghg_A          108 YNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRS  160 (562)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34555 77777777777777777788888888888888888999988866543

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=91.65  E-value=3.1  Score=38.44  Aligned_cols=46  Identities=15%  Similarity=0.220  Sum_probs=41.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469          501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA  546 (644)
Q Consensus       501 ~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~  546 (644)
                      ..+.|+.--...|..+..||..|+.++......+..++.++..||.
T Consensus        98 EAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~  143 (154)
T 2ocy_A           98 EANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKK  143 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566777778899999999999999999999999999999999987

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=90.19  E-value=3  Score=35.34  Aligned_cols=33  Identities=30%  Similarity=0.503  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHH
Q 006469          144 IELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEE  179 (644)
Q Consensus       144 ~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~~e~  179 (644)
                      .++..|++.||..   ...++.|++..+.|+.++..
T Consensus         9 e~mq~LNdRlAsy---IdKVR~LEqqN~~Le~~i~~   41 (93)
T 3s4r_A            9 VELQELNDRFANL---IDKVRFLEQQNKILLAELEQ   41 (93)
T ss_dssp             CCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            3567888888883   45788888888888777643

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=90.18  E-value=8.3  Score=35.37  Aligned_cols=36  Identities=17%  Similarity=0.268  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 006469          253 VNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA  288 (644)
Q Consensus       253 leml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~  288 (644)
                      +.++..||++|..|+..++..+..|..+|..+....
T Consensus        82 l~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nl  117 (147)
T 2b9c_A           82 LVIIESDLERAEERAELSEGKCAELEEELKTVTNNL  117 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999998766654

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=89.72  E-value=6.9  Score=34.16  Aligned_cols=71  Identities=15%  Similarity=0.144  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469          206 REQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQS  283 (644)
Q Consensus       206 rE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~  283 (644)
                      ++++|..++..+...+..++..+...+.+.       .........|+..++..-+.-..++-.||..|+.|-..--.
T Consensus         4 ~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~-------~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~   74 (111)
T 2v66_B            4 RNRDLQADNQRLKYEVEALKEKLEHQYAQS-------YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRA   74 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence            334455555555555555555444332111       12244567888888888888888999999998888766443

>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*

Probab=89.15  E-value=5.1  Score=39.08  Aligned_cols=52  Identities=13%  Similarity=0.233  Sum_probs=33.3

Q ss_pred             hhcCCCChHHHHHHHHHHHh-hhhhhHhhHhHHHHHHHHHHHHhHhhhhHHHH
Q 006469          112 LYEAPDPYPALASIAEQDLK-LSELESENRKMKIELEEYRTEATHLKNQQSTI  163 (644)
Q Consensus       112 L~eaPDP~PlLe~s~~~~~~-~~~le~e~~~Lk~el~~l~~e~a~lk~q~~~~  163 (644)
                      |..+|||..++....+.... +..++.++..|..++.++..++.++..|+..+
T Consensus       113 L~~~~d~~e~i~elfd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~  165 (213)
T 1ik9_A          113 LEKVENPAEVIRELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKA  165 (213)
T ss_dssp             CEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55678998875444444332 23556677777777777777777776555543

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=88.70  E-value=4.6  Score=44.07  Aligned_cols=24  Identities=17%  Similarity=0.066  Sum_probs=19.3

Q ss_pred             CChhhHHHHHHHHHHHHhcccCCc
Q 006469          363 PTSKMVDDLRKKVKILQAVGYNSI  386 (644)
Q Consensus       363 ~~~sDYeeiKrEL~iLk~IEf~~~  386 (644)
                      .+..+|+.+.++|.-+-++.+-..
T Consensus       173 vd~~sY~~~QKQLeQv~a~dL~p~  196 (562)
T 3ghg_A          173 VDLKDYEDQQKQLEQVIAKDLLPS  196 (562)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCCCCS
T ss_pred             cchHHHHHHHHHHHHHhhcccCCc
Confidence            456799999999999988866543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=87.99  E-value=12  Score=41.54  Aligned_cols=39  Identities=15%  Similarity=0.286  Sum_probs=30.1

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 006469          250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA  288 (644)
Q Consensus       250 ~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~  288 (644)
                      ..|++.+...++..+.++.++.+++..++.++.+.....
T Consensus       543 ~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~  581 (597)
T 3oja_B          543 EQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK  581 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            356677777788888888888888888888887766554

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=87.36  E-value=4.2  Score=36.41  Aligned_cols=36  Identities=22%  Similarity=0.262  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469          511 NQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA  546 (644)
Q Consensus       511 ~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~  546 (644)
                      .+...+...+..||.++.+....+...-.|+..|-.
T Consensus        75 ~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Lln  110 (129)
T 3tnu_B           75 LALKDARNKLAELEEALQKAKQDMARLLREYQELMN  110 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            456667778888888888888877777666665544

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=87.25  E-value=16  Score=32.61  Aligned_cols=30  Identities=27%  Similarity=0.279  Sum_probs=18.7

Q ss_pred             hHHHHHHHHHHHhhhhhhHhhHhHHHHHHHHHHHHhHh
Q 006469          119 YPALASIAEQDLKLSELESENRKMKIELEEYRTEATHL  156 (644)
Q Consensus       119 ~PlLe~s~~~~~~~~~le~e~~~Lk~el~~l~~e~a~l  156 (644)
                      .|+|..+..        +.++.++..++..++..+...
T Consensus         3 KPLL~~~~~--------e~E~~~~~eel~~lke~l~k~   32 (129)
T 2fxo_A            3 SPLLKSAER--------EKEMASMKEEFTRLKEALEKS   32 (129)
T ss_dssp             HHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCchhhhhh--------HHHHHHHHHHHHHHHHHHHHH
Confidence            588877644        335666666666666666543

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=86.29  E-value=3.5  Score=37.01  Aligned_cols=76  Identities=16%  Similarity=0.219  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcchhHHHH
Q 006469          429 TSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLKV  508 (644)
Q Consensus       429 ~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~I  508 (644)
                      ..++..+...+..+..+++.++..+..||.-|..+....                                         
T Consensus        37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~-----------------------------------------   75 (131)
T 3tnu_A           37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRY-----------------------------------------   75 (131)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-----------------------------------------
Confidence            344444444555555666666666777777766554321                                         


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469          509 ICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA  546 (644)
Q Consensus       509 vt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~  546 (644)
                       ..++..+...+..||.++.+....+...-.|+..|-.
T Consensus        76 -~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~  112 (131)
T 3tnu_A           76 -CMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLD  112 (131)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             3456677888888888888888877777777665554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=86.25  E-value=6.5  Score=43.72  Aligned_cols=37  Identities=11%  Similarity=0.128  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469          510 CNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA  546 (644)
Q Consensus       510 t~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~  546 (644)
                      ..+.+.++.++.++|..+...+..+..+++|+..+++
T Consensus       536 ~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~  572 (597)
T 3oja_B          536 QKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQ  572 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            3445555566666666666666666666666666666

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=85.81  E-value=22  Score=32.86  Aligned_cols=32  Identities=16%  Similarity=0.346  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          201 EILQEREQALQDQLRQAKDSVATMQKLHELAQ  232 (644)
Q Consensus       201 ~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q  232 (644)
                      ..+.+++..+..++..+..++++.....+.+.
T Consensus        66 ekasqrEd~yEeqIk~L~~kLKEAE~RAE~AE   97 (155)
T 2efr_A           66 EKYSQKEDKYEEEIKVLSDKLKEAETRAEFAE   97 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555555555555555555443

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=84.80  E-value=6.8  Score=34.71  Aligned_cols=73  Identities=21%  Similarity=0.287  Sum_probs=59.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhc
Q 006469          307 SAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAV  381 (644)
Q Consensus       307 ~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~I  381 (644)
                      ..++..|-.|..++.+|...+..........+.+|..++..+..+++.-....+..  ..|-+.|+.++..|+..
T Consensus        11 d~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a--~~e~e~Lr~e~~~l~~~   83 (120)
T 3i00_A           11 DEKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQA--ADDCEFLRAELDELRRQ   83 (120)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence            45577799999999999999999888888888999988888888888777665544  46888999999988754

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=84.53  E-value=11  Score=31.93  Aligned_cols=29  Identities=10%  Similarity=0.192  Sum_probs=23.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          501 DQSSMLKVICNQRDRFRARLRETEEEVRQ  529 (644)
Q Consensus       501 ~~~siL~Ivt~QRDRfr~rn~ELE~el~~  529 (644)
                      ..+.|+.--...|..+..||..|..+|..
T Consensus        66 EAN~MVa~ar~e~~~~e~kn~~L~~qL~d   94 (97)
T 2eqb_B           66 EANNMVADARKEKYAIEILNKRLTEQLRE   94 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45667776788889999999999988865

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=84.00  E-value=26  Score=32.30  Aligned_cols=56  Identities=14%  Similarity=0.201  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Q 006469          312 IISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQA  380 (644)
Q Consensus       312 ~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~  380 (644)
                      .|..|+.++.+|+..|...+..+......|...+..+    ..+         .+++..+..++.-||.
T Consensus        99 sv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el----~~~---------~~~~~~~~~~~~~~~~  154 (155)
T 2efr_A           99 SVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKV----EEL---------LSKNYHLENEVARLKK  154 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH---------HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhc---------ccchHHHHHHHHHhhc
Confidence            3555555556666566555555544444444333332    122         2466677777776664

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=83.97  E-value=12  Score=31.51  Aligned_cols=40  Identities=13%  Similarity=0.095  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006469          424 KLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKG  463 (644)
Q Consensus       424 ~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~  463 (644)
                      ++..|...+...++-+......+.+++..+.+++.+++++
T Consensus         3 ~~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i   42 (94)
T 3jsv_C            3 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETV   42 (94)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777888888888888888888888888888877644

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=83.60  E-value=19  Score=30.43  Aligned_cols=39  Identities=18%  Similarity=0.229  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469          201 EILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRA  240 (644)
Q Consensus       201 ~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~  240 (644)
                      .-|.+. ..+..++-.....+..+.+.+..++.+|.-++.
T Consensus        57 ~~w~ey-n~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~K   95 (96)
T 3q8t_A           57 QYQREY-SEFKRQQLELDDELKSVENQMRYAQMQLDKLKK   95 (96)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            335443 467778888899999999999999999887764

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=82.57  E-value=12  Score=33.38  Aligned_cols=65  Identities=20%  Similarity=0.237  Sum_probs=57.2

Q ss_pred             chhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006469          401 SKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS  465 (644)
Q Consensus       401 ~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~  465 (644)
                      .+||..|.+-..+...++..++..+..++..+..+..++.....+++.+-..--.|+..|.+...
T Consensus        60 ~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYRk  124 (129)
T 3tnu_B           60 ANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYRK  124 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57888899989999999999999999999999999999999999999888888888888877653

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=82.49  E-value=20  Score=30.35  Aligned_cols=39  Identities=8%  Similarity=0.218  Sum_probs=27.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTA  539 (644)
Q Consensus       501 ~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~  539 (644)
                      +.....|.|....+-...++..|+.++.....++..++.
T Consensus        62 ~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~  100 (107)
T 1fxk_A           62 AKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQV  100 (107)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566778888887777777777777776666666555554

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=82.39  E-value=7.8  Score=34.69  Aligned_cols=45  Identities=13%  Similarity=0.243  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469          316 LNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQ  360 (644)
Q Consensus       316 L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~  360 (644)
                      +.+.+..|+.++.........++..++..+..+..++..++....
T Consensus        57 l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~  101 (131)
T 3tnu_A           57 QLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEME  101 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444444444444444444433

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=81.47  E-value=22  Score=29.58  Aligned_cols=27  Identities=22%  Similarity=0.338  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          202 ILQEREQALQDQLRQAKDSVATMQKLH  228 (644)
Q Consensus       202 ~~~erE~~L~~ql~~ae~~l~~L~~~~  228 (644)
                      ...++-..|..+-..++.++.++...+
T Consensus        60 eaEe~~~~L~~~K~eLE~~l~el~~rl   86 (89)
T 3bas_A           60 QLEDKVEELLSKNYHLENEVARLKKLV   86 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344455555555566666666665544

>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1

Probab=81.25  E-value=15  Score=30.27  Aligned_cols=50  Identities=14%  Similarity=0.256  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 006469          313 ISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQAR  362 (644)
Q Consensus       313 i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~  362 (644)
                      |..+.+.+..|+.++.........++..++..+..+..++..++...+.+
T Consensus         3 l~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q   52 (84)
T 1gk4_A            3 VDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARH   52 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55667777778887877777777777777777777666666666665554

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=81.01  E-value=25  Score=29.95  Aligned_cols=63  Identities=16%  Similarity=0.207  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          253 VNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNERE  332 (644)
Q Consensus       253 leml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~  332 (644)
                      |.++..|.|.|.-|+..++..+..+.....+                  ++.++.+..+.|..++.++...+..|.....
T Consensus        11 m~~lk~e~e~a~drae~~e~~~k~~e~~~~~------------------~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~   72 (101)
T 3u1c_A           11 MQMLKLDKENALDRAEQAEADKKAAEERSKQ------------------LEDDIVQLEKQLRVTEDSRDQVLEELHKSED   72 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566667777777777777666555544322                  3333444455677777777766666655444


Q ss_pred             H
Q 006469          333 Q  333 (644)
Q Consensus       333 ~  333 (644)
                      .
T Consensus        73 k   73 (101)
T 3u1c_A           73 S   73 (101)
T ss_dssp             H
T ss_pred             H
Confidence            3

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	644
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	90.62
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	83.72

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=90.62  E-value=2.2  Score=35.92  Aligned_cols=118  Identities=17%  Similarity=0.205  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcccccccc-ccccccccC-
Q 006469          417 ELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGT-ELSEKADKK-  494 (644)
Q Consensus       417 eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-  494 (644)
                      .|.+|..+...++..++.++.++..++..+.+....+..|+.    +....        +..++++.+. -.+++.-.. 
T Consensus         2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~----l~~~~--------~~e~lvplg~~~~v~~~i~~~   69 (133)
T d1fxkc_           2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSD----IQGKD--------GSETLVPVGAGSFIKAELKDT   69 (133)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTTCT--------TCEEEEEEETTEEEEEECCST
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcCC--------CCeEEEEcCCceEEEEEecCC
Confidence            356666777777777777777777777777777777777653    22111        1111111000 001110000 


Q ss_pred             -------CCC--CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469          495 -------HTY--PDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA  546 (644)
Q Consensus       495 -------~~~--~~~~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~  546 (644)
                             |.+  ..-+...-+.++....+.++..+..|..++......+..+..++..+.+
T Consensus        70 ~~vlV~lG~g~~vE~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~~  130 (133)
T d1fxkc_          70 SEVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA  130 (133)
T ss_dssp             TEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEecCCeeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   000  0124556788888888888888888888888888888888888776654

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=83.72  E-value=8.3  Score=31.05  Aligned_cols=43  Identities=7%  Similarity=0.249  Sum_probs=33.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469          501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEK  543 (644)
Q Consensus       501 ~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~  543 (644)
                      +...+.|.|....+-+..++..|+.++.....++..++..+..
T Consensus        62 ~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l~~  104 (107)
T d1fxka_          62 AKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE  104 (107)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677889888888888888888888887777777777765543