Citrus Sinensis ID: 006473
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 643 | 2.2.26 [Sep-21-2011] | |||||||
| Q921I2 | 584 | Kelch domain-containing p | yes | no | 0.716 | 0.789 | 0.375 | 2e-87 | |
| Q8TBB5 | 520 | Kelch domain-containing p | yes | no | 0.741 | 0.917 | 0.365 | 3e-85 | |
| Q5R8W1 | 522 | Kelch domain-containing p | yes | no | 0.699 | 0.862 | 0.372 | 2e-84 | |
| Q08979 | 651 | Kelch repeat-containing p | yes | no | 0.668 | 0.660 | 0.311 | 2e-55 | |
| P87061 | 1147 | Tip elongation aberrant p | yes | no | 0.353 | 0.197 | 0.275 | 8e-24 | |
| O14248 | 1125 | Tip elongation aberrant p | no | no | 0.312 | 0.178 | 0.277 | 3e-21 | |
| Q7M3S9 | 943 | RING finger protein B OS= | yes | no | 0.351 | 0.239 | 0.266 | 2e-20 | |
| P38853 | 1164 | Kelch repeat-containing p | no | no | 0.349 | 0.193 | 0.258 | 7e-19 | |
| Q54C94 | 1127 | Ras guanine nucleotide ex | no | no | 0.393 | 0.224 | 0.241 | 1e-18 | |
| P50090 | 882 | Kelch repeat-containing p | no | no | 0.362 | 0.264 | 0.253 | 2e-17 |
| >sp|Q921I2|KLDC4_MOUSE Kelch domain-containing protein 4 OS=Mus musculus GN=Klhdc4 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 323 bits (828), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 191/509 (37%), Positives = 281/509 (55%), Gaps = 48/509 (9%)
Query: 13 EKTERKTAKAEEKRARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNC 72
EKT K K KR+R+E E+D++A++ Q +AKK +V E P PSPR N
Sbjct: 15 EKTAAKMEKKVSKRSRKE------EEDLEALIAHFQTLDAKKTQV-TETPCPPPSPRLNA 67
Query: 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAV- 131
SL+ +P K+ ELIL+GGE++NG KT++Y +LY Y + K W + P PP R AHQAV
Sbjct: 68 SLSAHPEKD-ELILFGGEYFNGQKTFMYNELYIYSIRKDTWTKVDIPGPPPRRCAHQAVV 126
Query: 132 --SWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYK 189
L++FGGEF SP+ E+F+HYKD W+L L T WEQ+ G PS RSGHRMV +K
Sbjct: 127 VPQGGGQLWVFGGEFASPDGEQFYHYKDLWVLHLATKTWEQIRSTGGPSGRSGHRMVAWK 186
Query: 190 HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEV 248
++I+FGGF+++ R+ YY+D+Y F LD F+W ++ P P+PRSG V Q +
Sbjct: 187 RQLILFGGFHESARDYIYYSDVYTFSLDTFQWSKLSPSGAG--PTPRSGCLMAVTPQGSI 244
Query: 249 FLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR-----TWEWSKVKKIGMPPGPRAGFSMC 303
+YGGYSK+ K +KG HSD++ L P W W+++ G+ P R+GFS+
Sbjct: 245 AIYGGYSKQ--RVKKDVDKGTQHSDMFLLKPAEGGEGKWAWTRINPSGVKPTARSGFSVA 302
Query: 304 VH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSS 362
V + L+FGGV D E + + S F ++LY + RW+ +L+ KS K K ++
Sbjct: 303 VAPNHQILVFGGVCDEEEEESLEGSFF-SDLYIYDAAKSRWFAAQLKGPKSEKKKRRRGK 361
Query: 363 EQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGV 422
+ P + +E + E E +E + + + + V+ G+
Sbjct: 362 AEDPEGTT---------EQETGGSSAPEPLEVIKEVVSEDGTVVTIKQ-----VLTPSGL 407
Query: 423 LAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITL 482
G +P S K D +PC R N+ + V LYVYGGM E D+++TL
Sbjct: 408 -----GVQP--SPKADDSASEASSTGQEPCPRSNAMLAVKHGLLYVYGGMFEAGDRQVTL 460
Query: 483 DDLYSLNLSKLDEWKCII---PASESEWV 508
DLY L+L K++EWK ++ P S+ EW+
Sbjct: 461 SDLYCLDLHKMEEWKTLVEMDPKSQ-EWL 488
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Mus musculus (taxid: 10090) |
| >sp|Q8TBB5|KLDC4_HUMAN Kelch domain-containing protein 4 OS=Homo sapiens GN=KLHDC4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 316 bits (810), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 198/541 (36%), Positives = 298/541 (55%), Gaps = 64/541 (11%)
Query: 13 EKTERKTAKAEEKRARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNC 72
EKT K K KR+R+E E+D++A++ Q +AK+ + VE P PSPR N
Sbjct: 15 EKTAAKMEKKVSKRSRKE------EEDLEALIAHFQTLDAKRTQT-VELPCPPPSPRLNA 67
Query: 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAV- 131
SL+++P K+ ELIL+GGE++NG KT++Y +LY Y+ K W + P+ PP R AHQAV
Sbjct: 68 SLSVHPEKD-ELILFGGEYFNGQKTFLYNELYVYNTRKDTWTKVDIPSPPPRRCAHQAVV 126
Query: 132 --SWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYK 189
L++FGGEF SPN E+F+HYKD W+L L T WEQ+ G PS RSGHRMV +K
Sbjct: 127 VPQGGGQLWVFGGEFASPNGEQFYHYKDLWVLHLATKTWEQVKSTGGPSGRSGHRMVAWK 186
Query: 190 HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEV 248
++I+FGGF+++ R+ YYND+Y F+LD F W ++ P P+PRSG Q V Q +
Sbjct: 187 RQLILFGGFHESTRDYIYYNDVYAFNLDTFTWSKLSPS--GTGPTPRSGCQMSVTPQGGI 244
Query: 249 FLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR-----TWEWSKVKKIGMPPGPRAGFSMC 303
+YGGYSK+ K +KG HSD++ L P W W+++ G+ P PR+GFS+
Sbjct: 245 VVYGGYSKQRV--KKDVDKGTRHSDMFLLKPEDGREDKWVWTRMNPSGVKPTPRSGFSVA 302
Query: 304 VH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSS 362
+ + L FGGV D E + + F N+LY + +RW+ +L+ KS K K ++
Sbjct: 303 MAPNHQTLFFGGVCDEEEEES-LSGEFFNDLYFYDATRNRWFEGQLKGPKSEKKKRRRGR 361
Query: 363 EQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVP--NSVIVDD 420
+++P + P + + + E V +V+
Sbjct: 362 KEEPEGGS-----RPACG-----------------GAGTQGPVQLVKEVVAEDGTVVTIK 399
Query: 421 GVLAAK-SGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQE 479
VL A S G+P S+ + ++++ P PC R N+ + V LYVYGGM E D++
Sbjct: 400 QVLTAPGSAGQP-RSEDEDSLEEAGSP-APGPCPRSNAMLAVKHGVLYVYGGMFEAGDRQ 457
Query: 480 ITLDDLYSLNLSKLDEWKCII---PASESEWVEASE----------GEDEDDDEDDSEDE 526
+TL DL+ L+L +++ WK ++ P ++ EW+E ++ E DDED E+
Sbjct: 458 VTLSDLHCLDLHRMEAWKALVEMDPETQ-EWLEETDSEEDSEEVEGAEGGVDDEDSGEES 516
Query: 527 G 527
G
Sbjct: 517 G 517
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Homo sapiens (taxid: 9606) |
| >sp|Q5R8W1|KLDC4_PONAB Kelch domain-containing protein 4 OS=Pongo abelii GN=KLHDC4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 313 bits (803), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 187/502 (37%), Positives = 277/502 (55%), Gaps = 52/502 (10%)
Query: 13 EKTERKTAKAEEKRARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNC 72
EKT K K KR+R+E E+D++A++ Q +AK+ + VE P PSPR N
Sbjct: 15 EKTAAKMEKKVSKRSRKE------EEDLEALIAHFQTLDAKRTQT-VEAPCPPPSPRLNA 67
Query: 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAV- 131
SL+++P K+ ELIL+GGE++NG KT++Y +LY Y++ K W + P+ PP R AHQAV
Sbjct: 68 SLSVHPEKD-ELILFGGEYFNGQKTFLYNELYVYNIRKDTWTKVDIPSPPPRRCAHQAVV 126
Query: 132 --SWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYK 189
L++FGGEF SPN E+F+HYKD W+L L T WEQ+ G PS RSGHRMV +K
Sbjct: 127 VPQGGGQLWVFGGEFASPNGEQFYHYKDLWVLHLATKTWEQVKSTGSPSGRSGHRMVAWK 186
Query: 190 HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEV 248
++I+FGGF+++ R+ YYND+Y F+LD F W ++ P P+PRSG Q V Q +
Sbjct: 187 RQLILFGGFHESTRDYIYYNDVYTFNLDTFTWSKLSPS--GTGPTPRSGCQMSVTPQGGI 244
Query: 249 FLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR-----TWEWSKVKKIGMPPGPRAGFSMC 303
+YGGYSK+ K ++G HSD++ L P W W+++ G+ P PR+GFS
Sbjct: 245 IIYGGYSKQ--RVKKDVDRGTRHSDMFLLKPEDGREDKWVWTRMNPSGVKPTPRSGFSAA 302
Query: 304 VH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSS 362
+ + L FGGV D E + + F N+LY + +RW+ +L+ KS K K ++
Sbjct: 303 MALNHQTLFFGGVCDEEEEES-LAGEFFNDLYFYDATRNRWFEGQLKGPKSEKKKRRRGR 361
Query: 363 EQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVP--NSVIVDD 420
E + ++ + + + E V +V+
Sbjct: 362 ----------------------KEESEGGSKLACGGAGTQGPVQVVKEVVAEDGTVVTIK 399
Query: 421 GVLAAK-SGGKPY-ESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQ 478
VLAA S G+P E + + S P PC R N+ + V LYVYGGM E D+
Sbjct: 400 QVLAAPGSAGQPRSEDEDSPEEAGSSAP---GPCPRSNAMLAVKHGVLYVYGGMFEAGDR 456
Query: 479 EITLDDLYSLNLSKLDEWKCII 500
++TL DL+ L+L +++ WK ++
Sbjct: 457 QVTLSDLHCLDLHRMEAWKALV 478
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Pongo abelii (taxid: 9601) |
| >sp|Q08979|KEL3_YEAST Kelch repeat-containing protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KEL3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 217 bits (553), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 148/475 (31%), Positives = 239/475 (50%), Gaps = 45/475 (9%)
Query: 37 EDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSLNINPL-KETELILYGGEFYNGN 95
+ D+D IL S K++ + + V + +V PS R++ + NP + EL ++GGEF +
Sbjct: 48 DQDLDEILSSFSKKQIELEHVDIT-SVEKPSCRTHPLMFANPQHNKHELFIFGGEFTDPE 106
Query: 96 K--TYVYGDLYRYDVEKQEWKVISSPNSPPPRS-AHQAVSWKNYLYIFGGEFTSPNQERF 152
T+ Y DLY Y ++ WK S N+P PRS A AV + GGEF+SP Q +F
Sbjct: 107 TKLTHFYNDLYSYSIKNNSWKKYVSQNAPLPRSSAAVAVHPSGIALLHGGEFSSPKQSKF 166
Query: 153 HHYKDFWMLDLKTNQWEQLNLKG---CPSPRSGHRMVLYKHKIIVFGGFYDTLR-EVRYY 208
+HY D W+ D ++ +L G PS RSGHR++ +K+ I+FGGF D + Y
Sbjct: 167 YHYSDTWLFDCVERKFTKLEFGGRDSSPSARSGHRIIAWKNYFILFGGFRDLGNGQTSYL 226
Query: 209 NDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKG 268
NDL+ FD+ +KW +++ P RSG F + L GGY K ++ + KG
Sbjct: 227 NDLWCFDISTYKWTKLETNSK---PDARSGHCFIPTDNSAILMGGYCKIIAKNNKNLMKG 283
Query: 269 IIHSDLWSL----DPRTWEWSKVKKIGMPPGPRAGFSMCVHKK-RALLFGGVVDMEMKGD 323
I +D W L DP+ W+W K+K P PR G+S + K+ +++ FGGV D++ +
Sbjct: 284 KILNDAWKLNLTPDPKKWQWEKLKNFKNQPSPRVGYSFNLWKQNKSVAFGGVYDLQETEE 343
Query: 324 VIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDK----LKKSSEQKPNSSALHEKLNPIE 379
+ S+F N+LY F L+ ++W L ++ ++ T K K K L + LN I
Sbjct: 344 SLESVFYNDLYMFHLELNKWSKLRIKPQRQTNSKNSPATSKRKSNKDQEKELQDLLNSIL 403
Query: 380 AEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSD 439
A+ ++ + + D+ S PNS+ D+ E D
Sbjct: 404 AK--------------SNLNDDDDDNDDNSTTGPNSIDDDEDN----------EDDSDLD 439
Query: 440 MQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLD 494
Q+ + P R N+ V D+L++Y G+ E+ +++ ++ YS++L+KLD
Sbjct: 440 NQEDITISNQLPHPRFNAATCVVGDSLFIYSGVWELGEKDYPINSFYSIDLNKLD 494
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Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|P87061|TEA1_SCHPO Tip elongation aberrant protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tea1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 112 bits (281), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 120/269 (44%), Gaps = 42/269 (15%)
Query: 94 GNKTYVYG----------DLYRYDVEKQEWKVISSPN-SPPPRSAHQAVSWKNYLYIFGG 142
G + Y++G DL+ ++ ++ + S +P PR H ++ N +FGG
Sbjct: 92 GQEIYIFGGVASDSQPKNDLWVLNLATSQFTSLRSLGETPSPRLGHASILIGNAFIVFGG 151
Query: 143 EFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFYDT 201
+R ++L+ + W++ N G PS R GH + KI +FGG
Sbjct: 152 LTNHDVADR--QDNSLYLLNTSSLVWQKANASGARPSGRYGHTISCLGSKICLFGG---- 205
Query: 202 LREVRYY-NDLYVFDLDQFKWQEIKPRFGSMW---PSPRSGFQFFVYQDEVFLYGGYSKE 257
R + YY NDL FDL+ + + S+ P R+G F + D+++++GG
Sbjct: 206 -RLLDYYFNDLVCFDLNNLNTSDSRWELASVVNDPPPARAGHVAFTFSDKLYIFGG---- 260
Query: 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVD 317
++ +DLW P+ WSKV+ G+ P PRAG + V + +FGG
Sbjct: 261 -------TDGANFFNDLWCYHPKQSAWSKVETFGVAPNPRAGHAASVVEGILYVFGGRAS 313
Query: 318 MEMKGDVIMSLFLNELYGFQLDNHRWYPL 346
FLN+LY F+L + WY L
Sbjct: 314 --------DGTFLNDLYAFRLSSKHWYKL 334
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Cell polarity protein. Acts as an end marker, directing the growth machinery to the cell poles. Involved in the regulation of microtubular organization, affecting the maintenance of a single central axis. Prevents the curling of microtubule tips around the cell ends and is required for the retention of polarity factors such as pom1, tip1 and tea2 at the cell ends, necessary for the cell to grow in a straight line. Links tip1 and tea4 in a common complex. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|O14248|TEA3_SCHPO Tip elongation aberrant protein 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tea3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 107/252 (42%), Gaps = 51/252 (20%)
Query: 120 NSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPS 178
N P R H V + +Y+FGG + + + + K+NQW ++ + PS
Sbjct: 108 NDSPARVGHSIVCSADTIYLFGGCDSETDSTFEVGDNSLYAYNFKSNQWNLVSTQSPLPS 167
Query: 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFD----------------------- 215
PR+GH M+L K+ +FGG + +Y ND+++FD
Sbjct: 168 PRTGHSMLLVDSKLWIFGGEC----QGKYLNDIHLFDTKGVDRRTQSELKQKANANNVEK 223
Query: 216 ----LDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIH 271
D+ W P S P PRS + Q ++F++GG++ + G +
Sbjct: 224 ANMEFDETDWSWETPFLHSSSPPPRSNHSVTLVQGKIFVHGGHN----------DTGPL- 272
Query: 272 SDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLN 331
SDLW D T W++V+ IG PGPR G ++GG + KG L LN
Sbjct: 273 SDLWLFDLETLSWTEVRSIGRFPGPREGHQATTIDDTVYIYGG---RDNKG-----LILN 324
Query: 332 ELYGFQLDNHRW 343
EL+ F RW
Sbjct: 325 ELWAFNYSQQRW 336
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Acts as a cell end marker required for efficient new end take-off (NETO), whereby growth is activated at the cell end to generate bipolarity in extending cells. Also required for proper placement of the septum. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q7M3S9|RNGB_DICDI RING finger protein B OS=Dictyostelium discoideum GN=rngB PE=2 SV=2 | Back alignment and function description |
|---|
Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 130/274 (47%), Gaps = 48/274 (17%)
Query: 88 GGEFYNGNKTYVYGDLYRYDVEKQEW-KVISSPNSPPPRSAHQAVSWKNY---------L 137
G + GN + D+ Y++ W K+ + N+P R H AV +++ +
Sbjct: 30 GFIVFGGNSNRAFNDIQYYNIFNNSWSKIEAVGNAPSERYGHSAVLYQSQSRPYSDSYQI 89
Query: 138 YIFGGEFTSPNQERFHHYKDFWMLDLKTNQ---WEQLNLKGCPSPRSGHRMVLYKHKIIV 194
FGG TS + D +L + +N+ W+Q+ K R+GH V+Y+ ++V
Sbjct: 90 IFFGGRATSK------PFSDINILYVNSNRSFIWKQVTTKSIEG-RAGHTAVVYRQNLVV 142
Query: 195 FGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFF-VYQDEVFLYGG 253
FGG + + +YYN + +F L+ +W++ G + PS R+ F V +++F++GG
Sbjct: 143 FGGHNN--HKSKYYNSVLLFSLESNEWRQ--QVCGGVIPSARATHSTFQVNNNKMFIFGG 198
Query: 254 YSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC-VHKKRALLF 312
Y + ++D++ LD TW W KV+ G PP PR+G S + + ++F
Sbjct: 199 YDGKK-----------YYNDIYYLDLETWIWKKVEAKGTPPKPRSGHSATMIQNNKLMIF 247
Query: 313 GGVVDMEMKGDVIMSLFLNELYGFQLDN---HRW 343
GG S FLN+++ ++ +RW
Sbjct: 248 GGCGS--------DSNFLNDIHILHIEGANEYRW 273
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|P38853|KEL1_YEAST Kelch repeat-containing protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KEL1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 96.3 bits (238), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 122/278 (43%), Gaps = 53/278 (19%)
Query: 95 NKTYVYGDLYRYDVEKQEWKVISSPN--------------SPPPRSAHQAVSWKNYLYIF 140
N+ YV G L+ V W + + N +PPPR H AV N +F
Sbjct: 138 NQIYVIGGLHDQSVYGDTWILTAFDNATRFSTTTIDISEATPPPRVGHAAVLCGNAFVVF 197
Query: 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP--RSGHRMVLY-----KHKII 193
GG+ N+E D ++L++ + +W G P P R GH++ + K K+
Sbjct: 198 GGDTHKVNKEGLMD-DDIYLLNINSYKWTVPAPVG-PRPLGRYGHKISIIATTQMKTKLY 255
Query: 194 VFGGFYDTLREVRYYNDLYVFDLDQFK-----WQEIKPRFGSMWPSPRSGFQFFVYQDEV 248
VFGG +D Y+NDL V+DL F+ W+ +KPR + P P + F Y ++
Sbjct: 256 VFGGQFDD----TYFNDLAVYDLSSFRRPDSHWEFLKPR--TFTPPPITNFTMISYDSKL 309
Query: 249 FLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKR 308
+++GG + +G+++ D++ DP +W + G P P + V+
Sbjct: 310 WVFGG----------DTLQGLVN-DVFMYDPAINDWFIIDTTGEKPPPVQEHATVVYNDL 358
Query: 309 ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346
+ GG + + +LN +Y L + +W+ L
Sbjct: 359 MCVVGGKDEHDA--------YLNSVYFLNLKSRKWFKL 388
|
Has a role in cell morphogenesis and cell fusion and may antagonize the PKC1 pathway. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q54C94|GEFF_DICDI Ras guanine nucleotide exchange factor F OS=Dictyostelium discoideum GN=gefF PE=2 SV=1 | Back alignment and function description |
|---|
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 132/286 (46%), Gaps = 33/286 (11%)
Query: 86 LYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFT 145
L+GG +G+ T D Y + + W +++ ++P R+ H V + N +YIFGG
Sbjct: 215 LFGGTLPDGSYT---NDFYTFQFAIKAWTILTFGSAPSIRTRHTGVLYNNSMYIFGGY-- 269
Query: 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFY--DTL 202
SP+ + D ++ T W ++ +G PSPR GH V+ +IVFGG T
Sbjct: 270 SPSGPK----NDIYVFSFDTQTWSEVQTEGTKPSPRYGHTAVVESGHMIVFGGISCDQTT 325
Query: 203 REVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDK 262
++ ND++ +LD +W ++ + PSPR+ +++ ++++GG ++
Sbjct: 326 KQQTVNNDIFSLNLDTKQWSQV---LSTCPPSPRTHHTATMHKGNMYVFGGQDQQ----S 378
Query: 263 NQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKG 322
NQ E I+H W+ + W ++ G PR+ S + + + GG +
Sbjct: 379 NQVED-IVHCYTWASN----SWKSIQFEGSSMTPRSDHSAVLFQDSIFISGGSSKSQTSQ 433
Query: 323 DVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNS 368
++ E+Y + L + + ++ ++++ SS K NS
Sbjct: 434 NL-------EIYEYDLYQKKCF--KISSSTIVQNRISHSSVVKGNS 470
|
Promotes the exchange of Ras-bound GDP by GTP. Dictyostelium discoideum (taxid: 44689) |
| >sp|P50090|KEL2_YEAST Kelch repeat-containing protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KEL2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 122/284 (42%), Gaps = 51/284 (17%)
Query: 93 NGNKTYVYGDLYRYDVEKQEWKVISSP--------------NSPPPRSAHQAVSWKNYLY 138
N N+ +V G L+ V W++ ++ N+PPPR H + N
Sbjct: 96 NDNRIFVTGGLHDQSVYGDVWQIAANADGTSFTSKRIDIDQNTPPPRVGHASTICGNAYV 155
Query: 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLY-----KHKI 192
+FGG+ N+ D ++ ++ + +W G P R GH++ + + K+
Sbjct: 156 VFGGDTHKLNKNGLLD-DDLYLFNINSYKWTIPQPIGRRPLGRYGHKISIIASNPMQTKL 214
Query: 193 IVFGGFYDTLREVRYYNDLYVFDLDQFK-----WQEIKPRFGSMWPSPRSGFQFFVYQDE 247
+FGG D Y+NDL VFDL F+ W+ ++P G + P P + Y ++
Sbjct: 215 YLFGGQVDE----TYFNDLVVFDLSSFRRPNSHWEFLEP-VGDL-PPPLTNHTMVAYDNK 268
Query: 248 VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKK 307
++++GG + + I +D + DP EWSKVK G P P + V+K
Sbjct: 269 LWVFGGETPKT-----------ISNDTYRYDPAQSEWSKVKTTGEKPPPIQEHASVVYKH 317
Query: 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKE 351
+ G G + + N++Y L + +WY L KE
Sbjct: 318 LMCVLG--------GKDTHNAYSNDVYFLNLLSLKWYKLPRMKE 353
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 643 | ||||||
| 118488318 | 680 | unknown [Populus trichocarpa] | 0.933 | 0.882 | 0.799 | 0.0 | |
| 225456767 | 682 | PREDICTED: kelch domain-containing prote | 0.928 | 0.875 | 0.799 | 0.0 | |
| 147781765 | 697 | hypothetical protein VITISV_027056 [Viti | 0.936 | 0.863 | 0.786 | 0.0 | |
| 255540383 | 681 | kelch repeat protein, putative [Ricinus | 0.953 | 0.900 | 0.773 | 0.0 | |
| 356508772 | 661 | PREDICTED: kelch domain-containing prote | 0.923 | 0.898 | 0.755 | 0.0 | |
| 356518912 | 660 | PREDICTED: kelch domain-containing prote | 0.922 | 0.898 | 0.744 | 0.0 | |
| 449440586 | 668 | PREDICTED: kelch domain-containing prote | 0.917 | 0.883 | 0.766 | 0.0 | |
| 18423130 | 666 | kelch repeat-containing protein [Arabido | 0.928 | 0.896 | 0.747 | 0.0 | |
| 297792335 | 665 | kelch repeat-containing protein [Arabido | 0.926 | 0.896 | 0.755 | 0.0 | |
| 38345333 | 679 | OSJNBa0081L15.6 [Oryza sativa Japonica G | 0.951 | 0.901 | 0.684 | 0.0 |
| >gi|118488318|gb|ABK95978.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 944 bits (2440), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/602 (79%), Positives = 539/602 (89%), Gaps = 2/602 (0%)
Query: 28 RRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSLNINPLKETELILY 87
RRETKK+SPEDDIDAILLSIQKEEAKKK+VHVE+NV APSPRSNC+LNINPLK+TELILY
Sbjct: 28 RRETKKLSPEDDIDAILLSIQKEEAKKKDVHVEENVAAPSPRSNCTLNINPLKDTELILY 87
Query: 88 GGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSP 147
GGEFYNG+KT+VYGDLYRYDVEKQEWK++SSPNSPPPRSAHQAV+WKNYLYIFGGEFTSP
Sbjct: 88 GGEFYNGSKTFVYGDLYRYDVEKQEWKLVSSPNSPPPRSAHQAVAWKNYLYIFGGEFTSP 147
Query: 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRY 207
NQERFHHYKDFWMLDLKTNQWEQLN KG PSPRSGHRMVL+KHKII+FGGFYDTLREVRY
Sbjct: 148 NQERFHHYKDFWMLDLKTNQWEQLNFKGSPSPRSGHRMVLHKHKIILFGGFYDTLREVRY 207
Query: 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEK 267
YNDL++FDLDQFKWQEIKP+ G+MWPS RSGFQFFVYQDEVFLYGGYSKEVS+DK+ SEK
Sbjct: 208 YNDLHIFDLDQFKWQEIKPKLGAMWPSARSGFQFFVYQDEVFLYGGYSKEVSSDKSISEK 267
Query: 268 GIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMS 327
GI+HSD+WSLDPRTWEW+KVKK GMPPGPRAGFSMCVHKKRA+LFGGVVDMEM+GDV+MS
Sbjct: 268 GIVHSDMWSLDPRTWEWNKVKKSGMPPGPRAGFSMCVHKKRAMLFGGVVDMEMEGDVMMS 327
Query: 328 LFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANE 387
LFLNELYGFQLDN RWYPLELRKEKSTKD+ KKSSEQ+ +S ++K + EE N+
Sbjct: 328 LFLNELYGFQLDNRRWYPLELRKEKSTKDRSKKSSEQR-TTSFDNKKYSNDMGEEPTPND 386
Query: 388 KDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVL-AAKSGGKPYESKKKSDMQKSLLP 446
DEN EY+EEA+ +ES+ID +S + + V DG L AAK GKP S+ K +Q S+L
Sbjct: 387 PDENLEYHEEAENIESSIDEISHNLTRKITVIDGSLSAAKLDGKPGTSEAKQILQNSVLS 446
Query: 447 EIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIPASESE 506
E VKPCGRINSCMVVG+D LY+YGGMMEI DQEITLDDLYSLNLSKLDEWKCIIPASESE
Sbjct: 447 ETVKPCGRINSCMVVGRDMLYIYGGMMEIRDQEITLDDLYSLNLSKLDEWKCIIPASESE 506
Query: 507 WVEASEGEDEDDDEDDSEDEGNGGSSSDETGDDDDDDEEDAEARDGDAGSLQMGDAVAII 566
WVEASE ED+D+DED S+ EG S+ + +DDDD+ D EAR+ +GSLQ+GDAVAII
Sbjct: 507 WVEASEDEDDDEDEDASDGEGGSDSNDETDDGEDDDDDNDVEARNNGSGSLQVGDAVAII 566
Query: 567 KGEGKNVRRKEKRARIEQIRANLGLSDSQRTPMPGESLKDFYRRTSMYWQMAAHEHTQHT 626
KGE KN+RRKEKRARIEQIRANLGLSD+QRTP PGESLKDFY+RT++YWQMAAHEHTQHT
Sbjct: 567 KGEKKNLRRKEKRARIEQIRANLGLSDAQRTPTPGESLKDFYKRTNLYWQMAAHEHTQHT 626
Query: 627 GK 628
GK
Sbjct: 627 GK 628
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456767|ref|XP_002276501.1| PREDICTED: kelch domain-containing protein 4 [Vitis vinifera] gi|297733624|emb|CBI14871.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 937 bits (2423), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/604 (79%), Positives = 549/604 (90%), Gaps = 7/604 (1%)
Query: 26 RARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSLNINPLKETELI 85
RARRE KKIS EDDIDAILLSIQKEEAKKKEVH+++NVPAP+PRSNCSL +NPLKETELI
Sbjct: 26 RARRENKKISEEDDIDAILLSIQKEEAKKKEVHIDENVPAPTPRSNCSLTMNPLKETELI 85
Query: 86 LYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFT 145
LYGGEFYNGNKT+VYGDLYR+D+EKQEWK+ISSPNSPPPRS+HQAV+WKNYLYIFGGEFT
Sbjct: 86 LYGGEFYNGNKTFVYGDLYRHDIEKQEWKLISSPNSPPPRSSHQAVAWKNYLYIFGGEFT 145
Query: 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV 205
SPNQE FHHYKDFW+LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV
Sbjct: 146 SPNQECFHHYKDFWVLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV 205
Query: 206 RYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265
RY+NDL+VFDLDQFKWQEIKPR GSMWPS RSGFQFFV+QDE+FLYGGYSKEVS+DKN S
Sbjct: 206 RYFNDLHVFDLDQFKWQEIKPRLGSMWPSARSGFQFFVFQDEIFLYGGYSKEVSSDKNNS 265
Query: 266 EKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVI 325
EKGI+HSD+WSLDPRTWEW+KVKK GMPPGPRAGFSMCVHKKRA+LFGGVVDME++GDV+
Sbjct: 266 EKGIVHSDMWSLDPRTWEWNKVKKSGMPPGPRAGFSMCVHKKRAVLFGGVVDMEVEGDVM 325
Query: 326 MSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDA 385
MSLFLNELYGFQLD HRWYPLELRKEKSTKDK+KKSS++K N + L K+ I+ E+ +
Sbjct: 326 MSLFLNELYGFQLDTHRWYPLELRKEKSTKDKVKKSSDKKYNGATLDNKIGSIDLEKCEE 385
Query: 386 NEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLL 445
N+ D+N E +EEA ++ES+ID +S + ++ V+DG + KS G+P+ES + D+Q S+
Sbjct: 386 NDGDDNLESHEEAADLESSIDEISRHMTTNITVNDGGPSIKSDGRPHESGAQLDLQNSIS 445
Query: 446 PEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIPASES 505
EIVKPCGRIN MVVGKDTLY+YGGMME+ DQEITLDDLY LNLSKLDEWKCIIPAS+S
Sbjct: 446 SEIVKPCGRINCSMVVGKDTLYIYGGMMEVKDQEITLDDLYCLNLSKLDEWKCIIPASKS 505
Query: 506 EWVEASEGEDEDDDEDDSEDEG-NGGSSSDETGDDDDDDEEDAEARDGDAGSLQMGDAVA 564
EW+EASE EDED+DEDDSEDE N GS+SDET DD++D EA+DG + SL+MGDAVA
Sbjct: 506 EWIEASEEEDEDEDEDDSEDEDCNSGSNSDET-----DDDDDVEAKDG-SRSLEMGDAVA 559
Query: 565 IIKGEGKNVRRKEKRARIEQIRANLGLSDSQRTPMPGESLKDFYRRTSMYWQMAAHEHTQ 624
IIKGEGKN+RRKEKRARIEQIRANLGLSDSQRTP+PGE+LKDFY+RT++YWQMAAHEHTQ
Sbjct: 560 IIKGEGKNLRRKEKRARIEQIRANLGLSDSQRTPIPGETLKDFYKRTNLYWQMAAHEHTQ 619
Query: 625 HTGK 628
HTGK
Sbjct: 620 HTGK 623
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147781765|emb|CAN61297.1| hypothetical protein VITISV_027056 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 931 bits (2405), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/614 (78%), Positives = 549/614 (89%), Gaps = 12/614 (1%)
Query: 26 RARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSLNINPLKETELI 85
RARRE KKIS EDDIDAILLSIQKEEAKKKEVH+++NVPAP+PRSNCSL +NPLKETELI
Sbjct: 26 RARRENKKISEEDDIDAILLSIQKEEAKKKEVHIDENVPAPTPRSNCSLTMNPLKETELI 85
Query: 86 LYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFT 145
LYGGEFYNGNKT+VYGDLYR+D+EKQEWK+ISSPNSPPPRS+HQAV+WKNYLYIFGGEFT
Sbjct: 86 LYGGEFYNGNKTFVYGDLYRHDIEKQEWKLISSPNSPPPRSSHQAVAWKNYLYIFGGEFT 145
Query: 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV 205
SPNQE FHHYKDFW+LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV
Sbjct: 146 SPNQEXFHHYKDFWVLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV 205
Query: 206 RYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265
RY+NDL+VFDLDQFKWQEIKPR GSMWPS RSGFQFFV+QDE+FLYGGYSKEVS+DKN S
Sbjct: 206 RYFNDLHVFDLDQFKWQEIKPRLGSMWPSARSGFQFFVFQDEIFLYGGYSKEVSSDKNNS 265
Query: 266 EKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVI 325
EKGI+HSD+WSLDPRTWEW+KVKK GMPPGPRAGFSMCVHKKRA+LFGGVVDME++GDV+
Sbjct: 266 EKGIVHSDMWSLDPRTWEWNKVKKSGMPPGPRAGFSMCVHKKRAVLFGGVVDMEVEGDVM 325
Query: 326 MSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDA 385
MSLFLNELYGFQLD HRWYPLELRKEKSTKDK+KKSS++K N + L K+ I+ E+ +
Sbjct: 326 MSLFLNELYGFQLDTHRWYPLELRKEKSTKDKVKKSSDKKYNGATLDNKIGSIDLEKCEE 385
Query: 386 NEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLL 445
N+ D+N E +EEA ++ES+ID +S + ++ V+DG + KS G+P+ES + D+Q S+
Sbjct: 386 NDGDDNLESHEEAADLESSIDEISRHMTTNITVNDGGPSIKSDGRPHESGAQLDLQNSIS 445
Query: 446 PEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIPASES 505
EIVKPCGRIN MVVGKDTLY+YGGMME+ DZEITLDDLY LNLSKLDEWKCIIPAS+S
Sbjct: 446 SEIVKPCGRINCSMVVGKDTLYIYGGMMEVKDZEITLDDLYCLNLSKLDEWKCIIPASKS 505
Query: 506 EWVEASEGEDEDDDEDDSEDEG-NGGSSSDETGDDDDDDEEDAE----------ARDGDA 554
EW+EASE EDED+DEDDSEDE N GS+SDET DDDD + E A+DG +
Sbjct: 506 EWIEASEEEDEDEDEDDSEDEDCNSGSNSDETDDDDDVERWYLELGETFCVSFNAKDG-S 564
Query: 555 GSLQMGDAVAIIKGEGKNVRRKEKRARIEQIRANLGLSDSQRTPMPGESLKDFYRRTSMY 614
SL+MGDAVAIIKGEGKN+RRKEKRARIEQIRANLGLSDSQRTP+PGE+LKDFY+RT++Y
Sbjct: 565 RSLEMGDAVAIIKGEGKNLRRKEKRARIEQIRANLGLSDSQRTPIPGETLKDFYKRTNLY 624
Query: 615 WQMAAHEHTQHTGK 628
WQMAAHEHTQHTGK
Sbjct: 625 WQMAAHEHTQHTGK 638
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540383|ref|XP_002511256.1| kelch repeat protein, putative [Ricinus communis] gi|223550371|gb|EEF51858.1| kelch repeat protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 927 bits (2395), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/617 (77%), Positives = 543/617 (88%), Gaps = 4/617 (0%)
Query: 15 TERKTAKAEEKRARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSL 74
TERKTAKAEEKRARRETKK+SPEDDIDAILLSIQKEEAKKKEV VE++VPAPSPRSNC+L
Sbjct: 15 TERKTAKAEEKRARRETKKVSPEDDIDAILLSIQKEEAKKKEVLVEESVPAPSPRSNCTL 74
Query: 75 NINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK 134
NINP K+TELILYGGEFYNGNKT+VYGDLYRYDVEKQEWK +SSPNSPPPRSAHQAV+WK
Sbjct: 75 NINPSKDTELILYGGEFYNGNKTFVYGDLYRYDVEKQEWKRVSSPNSPPPRSAHQAVAWK 134
Query: 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIV 194
NYLYIFGGEFTSPNQERFHHYKDFW+LDLKTNQWEQLN KGCPSPRSGHRMVLYKHKII+
Sbjct: 135 NYLYIFGGEFTSPNQERFHHYKDFWVLDLKTNQWEQLNYKGCPSPRSGHRMVLYKHKIIL 194
Query: 195 FGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGY 254
FGGFYDTLREVRYYNDLY+FDLDQFKWQEIKP+ G+MWPSPRSGFQFFVYQDE+FLYGGY
Sbjct: 195 FGGFYDTLREVRYYNDLYIFDLDQFKWQEIKPKLGAMWPSPRSGFQFFVYQDEIFLYGGY 254
Query: 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
SKE+S+DK+ S+KGI+HSD+WSLDPRTWEWSKVKK GMPPGPRAGFSMCVHKKRA+LFGG
Sbjct: 255 SKEISSDKSSSDKGIVHSDMWSLDPRTWEWSKVKKSGMPPGPRAGFSMCVHKKRAMLFGG 314
Query: 315 VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEK 374
VVDMEM+GDV+MSLFLNELYGFQLDN RWYPLELRKEKSTKDKLKK EQ+ N + +K
Sbjct: 315 VVDMEMEGDVMMSLFLNELYGFQLDNCRWYPLELRKEKSTKDKLKKIPEQRCNGPDV-DK 373
Query: 375 LNPIEAEEFDA--NEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPY 432
++ +E EE A DEN +Y+ EA +ES I+ +S+ + ++ +DDG +K GK
Sbjct: 374 MSVMEMEETAAFPTNDDENQDYHGEAAGIESTINEISQIMKTNMDLDDGSSTSKLDGKAD 433
Query: 433 ESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSK 492
SK K +Q S+ E+VKPCGRINSCMVVG+DTLY+YGGMMEI DQEITLDDLYSLNLSK
Sbjct: 434 ASKAKMVLQNSVSSEVVKPCGRINSCMVVGRDTLYIYGGMMEIKDQEITLDDLYSLNLSK 493
Query: 493 LDEWKCIIPASESEWV-EASEGEDEDDDEDDSEDEGNGGSSSDETGDDDDDDEEDAEARD 551
LDEW CIIPASESEW+ + + D++DD+ ++ + D+DDDD+EDAEA +
Sbjct: 494 LDEWNCIIPASESEWLEASEDEGDDEDDDSSEDECSCDDDDDETDEDNDDDDDEDAEAGN 553
Query: 552 GDAGSLQMGDAVAIIKGEGKNVRRKEKRARIEQIRANLGLSDSQRTPMPGESLKDFYRRT 611
G + SL++GDAVA+IKG KN+RRKEKRARIEQIRANLGLSDSQRTP+PGESL+DFYRRT
Sbjct: 554 GGSVSLKVGDAVAMIKGGKKNLRRKEKRARIEQIRANLGLSDSQRTPVPGESLRDFYRRT 613
Query: 612 SMYWQMAAHEHTQHTGK 628
++YWQMAAHEHTQHTGK
Sbjct: 614 NLYWQMAAHEHTQHTGK 630
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508772|ref|XP_003523128.1| PREDICTED: kelch domain-containing protein 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 909 bits (2350), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/614 (75%), Positives = 534/614 (86%), Gaps = 20/614 (3%)
Query: 15 TERKTAKAEEKRARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSL 74
TERKTA+AEEK+ARRETKK+SPEDDIDAILLSIQKEEAKKKEVHV+DNVPAPSPRSNCSL
Sbjct: 15 TERKTARAEEKKARRETKKLSPEDDIDAILLSIQKEEAKKKEVHVDDNVPAPSPRSNCSL 74
Query: 75 NINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK 134
+NPLKETELILYGGEFYNGNKT+VYGDLYRYDVEK EWK++SSPNSPPPRSAHQAV+WK
Sbjct: 75 TVNPLKETELILYGGEFYNGNKTFVYGDLYRYDVEKLEWKLVSSPNSPPPRSAHQAVAWK 134
Query: 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIV 194
NY+YIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKII+
Sbjct: 135 NYVYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIL 194
Query: 195 FGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGY 254
FGGFYDTLREVRYYNDL+VFDLDQFKWQEIKP+ G+MWP+ RSGFQ FVYQD++FLYGGY
Sbjct: 195 FGGFYDTLREVRYYNDLFVFDLDQFKWQEIKPKPGAMWPTARSGFQLFVYQDDIFLYGGY 254
Query: 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
SKEVS+DK+ SEKGI+HSD+WSLDP+TWEW+KVKK GMPPGPRAGFSMCVHK+RALLFGG
Sbjct: 255 SKEVSSDKSNSEKGIVHSDMWSLDPKTWEWNKVKKSGMPPGPRAGFSMCVHKRRALLFGG 314
Query: 315 VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEK 374
VVD+E++GDV+MSLFLNELYGFQLD +RWYPLELRKEKSTKDKLKK + P+ K
Sbjct: 315 VVDIEVEGDVMMSLFLNELYGFQLDTNRWYPLELRKEKSTKDKLKKIEQNCPDDV---NK 371
Query: 375 LNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYES 434
+NP + EE+++ E+NID++S+ + +++ +DDG KS GK ES
Sbjct: 372 INPACTTREET----------EESEDEENNIDDISKNIASNMSIDDGETLTKSEGKAEES 421
Query: 435 KKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLD 494
K D+Q SL +VKPCGRIN+CM VG+DTLY+YGGMMEI DQEITLDDLYSLNLSKLD
Sbjct: 422 SAKLDIQSSLPEVVVKPCGRINACMAVGRDTLYIYGGMMEIKDQEITLDDLYSLNLSKLD 481
Query: 495 EWKCIIPASESEWVEASEGEDEDDDEDDSEDEGNGGSSSDETGDDDDDDEEDAEARDGDA 554
EWKCIIPASESEWVEAS+ ++E++D+D+ E +G+ + DE +E+ E +
Sbjct: 482 EWKCIIPASESEWVEASDDDEENEDDDEDESDGDSLTDEDED-------DEEEEEEEAQN 534
Query: 555 GSLQMGDAVAIIKGEGKNVRRKEKRARIEQIRANLGLSDSQRTPMPGESLKDFYRRTSMY 614
S+Q+GDAVA+IKG GKN+RRKE+R RIEQIRA+LGLSDSQRTP PGESLKDFYRRT+MY
Sbjct: 535 ASVQVGDAVALIKGVGKNLRRKERRVRIEQIRASLGLSDSQRTPSPGESLKDFYRRTNMY 594
Query: 615 WQMAAHEHTQHTGK 628
WQMAAHEHTQHTGK
Sbjct: 595 WQMAAHEHTQHTGK 608
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356518912|ref|XP_003528120.1| PREDICTED: kelch domain-containing protein 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 894 bits (2309), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/614 (74%), Positives = 537/614 (87%), Gaps = 21/614 (3%)
Query: 15 TERKTAKAEEKRARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSL 74
TERKTA+AEEK+ARRETKK+SPEDDIDAILLSIQKEEAKKK+V V+DNVPAPSPRSNCSL
Sbjct: 15 TERKTARAEEKKARRETKKLSPEDDIDAILLSIQKEEAKKKDVQVDDNVPAPSPRSNCSL 74
Query: 75 NINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK 134
+NPLKETELILYGGEFYNGNKT+VYGDL+RYDVEK EWK++SSPNSPPPRSAHQAV+WK
Sbjct: 75 TVNPLKETELILYGGEFYNGNKTFVYGDLFRYDVEKLEWKLVSSPNSPPPRSAHQAVAWK 134
Query: 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIV 194
NY+YIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKII+
Sbjct: 135 NYVYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIL 194
Query: 195 FGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGY 254
FGGFYDTLREVRYYNDL+VFDLDQFKWQEIKP+ +MWP+ RSGFQ FVYQD++FLYGGY
Sbjct: 195 FGGFYDTLREVRYYNDLFVFDLDQFKWQEIKPKPAAMWPTARSGFQLFVYQDDIFLYGGY 254
Query: 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
SKEVS+DK+ SEKGI+HSD+WSLDP++WEW+KVKK GMPPGPRAGFSMCVHK+RALLFGG
Sbjct: 255 SKEVSSDKSNSEKGIVHSDMWSLDPKSWEWNKVKKSGMPPGPRAGFSMCVHKRRALLFGG 314
Query: 315 VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEK 374
VVD+E++ DV+MSLFLNELYGFQLD +RWYPLELRKEKSTKDKLKK + P+ + +K
Sbjct: 315 VVDIEVEVDVMMSLFLNELYGFQLDTNRWYPLELRKEKSTKDKLKKIEQNCPDD--VDKK 372
Query: 375 LNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYES 434
+NP A + EE+D+ E++ID +S+ + +++ +DDG KS GKP ES
Sbjct: 373 INPACATREET----------EESDDEENSIDYISKNIASNMSIDDGETLTKSEGKPKES 422
Query: 435 KKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLD 494
K D+Q S LPE+VKPCGRIN+CM VG+DTLY+YGGMMEI DQEITLDDLYSLNLSKLD
Sbjct: 423 SAKLDLQSS-LPEVVKPCGRINACMAVGRDTLYIYGGMMEIKDQEITLDDLYSLNLSKLD 481
Query: 495 EWKCIIPASESEWVEASEGEDEDDDEDDSEDEGNGGSSSDETGDDDDDDEEDAEARDGDA 554
EWKCIIPASESEWVEAS+ ++E+DD++D D ++ ++++++ ++A
Sbjct: 482 EWKCIIPASESEWVEASDDDEENDDDEDESDNDGSTDEDEDDEEEEEEEAQNA------- 534
Query: 555 GSLQMGDAVAIIKGEGKNVRRKEKRARIEQIRANLGLSDSQRTPMPGESLKDFYRRTSMY 614
S+Q+ DAVA+IKG GKN+RRKE+R+RIEQIRA+LGLSDSQRTP+PGESL+DFYRRT+MY
Sbjct: 535 -SVQVVDAVALIKGVGKNLRRKERRSRIEQIRASLGLSDSQRTPLPGESLRDFYRRTNMY 593
Query: 615 WQMAAHEHTQHTGK 628
WQMAAHEHTQHTGK
Sbjct: 594 WQMAAHEHTQHTGK 607
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440586|ref|XP_004138065.1| PREDICTED: kelch domain-containing protein 4-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 885 bits (2287), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/604 (76%), Positives = 530/604 (87%), Gaps = 14/604 (2%)
Query: 26 RARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSLNINPLKETELI 85
RARRE+KK+SPEDDIDAILLSIQKEEAKKKEVHVE+NVPAPSPRSNCSL INPLKETELI
Sbjct: 26 RARRESKKLSPEDDIDAILLSIQKEEAKKKEVHVEENVPAPSPRSNCSLTINPLKETELI 85
Query: 86 LYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFT 145
LYGGEFYNG KTYVYGDLYRYDVEK EWKVISSPNSPPPRSAHQAV+WKNYLYIFGGEFT
Sbjct: 86 LYGGEFYNGTKTYVYGDLYRYDVEKLEWKVISSPNSPPPRSAHQAVAWKNYLYIFGGEFT 145
Query: 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV 205
SPNQERFHHYKDFW+LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV
Sbjct: 146 SPNQERFHHYKDFWVLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV 205
Query: 206 RYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265
RYYND+YVFDLDQ+KWQE+KP G+MWPSPRSGFQFFV+QDEVFLYGGY KE+ +DK S
Sbjct: 206 RYYNDMYVFDLDQYKWQEVKPSPGAMWPSPRSGFQFFVHQDEVFLYGGYFKEIQSDKGTS 265
Query: 266 EKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMK-GDV 324
E+G++H+D+WSLDPRTW+W+KVKK GMPPGPRAGFSMCVHK+RALLFGGVVDME++ GD
Sbjct: 266 ERGVVHADMWSLDPRTWQWNKVKKGGMPPGPRAGFSMCVHKRRALLFGGVVDMEVEGGDA 325
Query: 325 IMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFD 384
+MSLFLNELY FQ+DNHRWYPLELRKEKS K K+KK S+QK N A + +N E D
Sbjct: 326 MMSLFLNELYAFQIDNHRWYPLELRKEKSIKAKIKKISDQKDNEVAFDDNIN---EEVVD 382
Query: 385 ANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSL 444
+ + +E+ ME++ID +S + +SV +++G L SG K ES S + ++
Sbjct: 383 VGKTE--TPVMDESCSMETDIDEISHHISSSVSINNGGLETSSGKKQQES---SSNKNAV 437
Query: 445 LPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIPASE 504
LPE++KPCGRINSC+VVG+DTLY+YGGMMEI DQEITLDDLY+LNLSKLDEWKCIIPA+E
Sbjct: 438 LPEVIKPCGRINSCVVVGRDTLYIYGGMMEIKDQEITLDDLYALNLSKLDEWKCIIPATE 497
Query: 505 SEWVEASEGEDEDDDEDDSEDEGNGGSSSDETGDDDDDDEEDAEARDGDAGSLQMGDAVA 564
SEWVEASE EDE+DDED+SE++ N S++ G D DEED EA G+ GS ++GDAVA
Sbjct: 498 SEWVEASEDEDEEDDEDESENDDNSEGSNESDG---DSDEEDFEA--GNDGSRKVGDAVA 552
Query: 565 IIKGEGKNVRRKEKRARIEQIRANLGLSDSQRTPMPGESLKDFYRRTSMYWQMAAHEHTQ 624
+IKGEG+N+RRKEKRARIEQIRANLGLSDSQRTPMPGESL++FY+RT++YWQMAAHEHTQ
Sbjct: 553 LIKGEGRNLRRKEKRARIEQIRANLGLSDSQRTPMPGESLREFYKRTNLYWQMAAHEHTQ 612
Query: 625 HTGK 628
HTGK
Sbjct: 613 HTGK 616
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18423130|ref|NP_568723.1| kelch repeat-containing protein [Arabidopsis thaliana] gi|15724228|gb|AAL06507.1|AF412054_1 AT5g50310/MXI22_1 [Arabidopsis thaliana] gi|332008541|gb|AED95924.1| kelch repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 879 bits (2272), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/614 (74%), Positives = 530/614 (86%), Gaps = 17/614 (2%)
Query: 15 TERKTAKAEEKRARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSL 74
TERKTAKA+EK+ARRE KK+SPEDDIDAILL+IQKEEAKKKEVHVE+NV APSPRSNCSL
Sbjct: 15 TERKTAKADEKKARREGKKLSPEDDIDAILLNIQKEEAKKKEVHVEENVAAPSPRSNCSL 74
Query: 75 NINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK 134
INPLKETELILYGGEFYNG KTYVYGDLYRYDVEKQEWK++SSPNSPPPRS+HQAV+WK
Sbjct: 75 TINPLKETELILYGGEFYNGQKTYVYGDLYRYDVEKQEWKLVSSPNSPPPRSSHQAVAWK 134
Query: 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIV 194
NYLYIFGGEFTSPNQERFHHYKDFWMLD+KTNQWEQLNLKGCPSPRSGHRMVLYKHKII+
Sbjct: 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDVKTNQWEQLNLKGCPSPRSGHRMVLYKHKIII 194
Query: 195 FGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGY 254
FGGFYDTLREVRYYNDLYVFDLDQ+KWQEIKP+ G+MWP+ RSGFQFFVYQDE+FLYGGY
Sbjct: 195 FGGFYDTLREVRYYNDLYVFDLDQYKWQEIKPKPGAMWPTARSGFQFFVYQDEIFLYGGY 254
Query: 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
SKE + + SEKGI+H+DLWSLDPRTWEW+KVKKIGMPP RAGFS+CVHKKRALLFGG
Sbjct: 255 SKE-VSSEKSSEKGIVHADLWSLDPRTWEWNKVKKIGMPPSSRAGFSVCVHKKRALLFGG 313
Query: 315 VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEK 374
VVDMEM+GDV+MSLFLNELYGFQLDN RWYP+ELRKEKS+KDK KK+ E KP +S
Sbjct: 314 VVDMEMEGDVMMSLFLNELYGFQLDNRRWYPIELRKEKSSKDKAKKTLEAKPVASN---- 369
Query: 375 LNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYES 434
+E D+ E+DE+ E+ D + S+ D +SE + ++ V DG + KS +
Sbjct: 370 ----NDDEMDSTEEDESLAMIEQTDGVGSS-DGISERMATNLTV-DGNRSDKSKALQ-GA 422
Query: 435 KKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLD 494
K + D Q S+ E+VKPCGRINSCMVVGKDTLY+YGGMMEI D+E+TLDDLYSLNLSKLD
Sbjct: 423 KTRLDPQVSVSEEVVKPCGRINSCMVVGKDTLYIYGGMMEIKDKEVTLDDLYSLNLSKLD 482
Query: 495 EWKCIIPASESEWVEASEGEDEDDDEDDSEDEGNGGSSSDETGDDDDDDEEDAEARDGDA 554
EWKCIIP +E+EWVE S+ E+ D+D+D+ + E + DD+DD+E+ EA D D
Sbjct: 483 EWKCIIPTTETEWVEVSDDEEGDEDDDEDDSE----DEGNSEESDDEDDDEEVEAMDVD- 537
Query: 555 GSLQMGDAVAIIKGEGKNVRRKEKRARIEQIRANLGLSDSQRTPMPGESLKDFYRRTSMY 614
GS+++G VA+IKG+GK++RRKEKRARIEQIRANLGLSDSQRTP+PGE+LKDFY+RT+MY
Sbjct: 538 GSVKVGVVVAMIKGQGKSLRRKEKRARIEQIRANLGLSDSQRTPVPGETLKDFYKRTNMY 597
Query: 615 WQMAAHEHTQHTGK 628
WQMAA+EHTQHTGK
Sbjct: 598 WQMAAYEHTQHTGK 611
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297792335|ref|XP_002864052.1| kelch repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297309887|gb|EFH40311.1| kelch repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 875 bits (2260), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/614 (75%), Positives = 532/614 (86%), Gaps = 18/614 (2%)
Query: 15 TERKTAKAEEKRARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSL 74
TERKTAKA+EK+ARRE KK+SPEDDIDAILLSIQKEEAKKKEVHVE+NV APSPRSNCSL
Sbjct: 15 TERKTAKADEKKARREGKKLSPEDDIDAILLSIQKEEAKKKEVHVEENVAAPSPRSNCSL 74
Query: 75 NINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK 134
INPLKETELILYGGEFYNG KTYVYGDLYRYDV+KQEWK ISSPNSPPPRS+HQAV+WK
Sbjct: 75 TINPLKETELILYGGEFYNGQKTYVYGDLYRYDVDKQEWKSISSPNSPPPRSSHQAVAWK 134
Query: 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIV 194
NYLYIFGGEFTSPNQERFHHYKDFWMLD+KTNQWEQLNLKGCPSPRSGHRMVLYKHKII+
Sbjct: 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDVKTNQWEQLNLKGCPSPRSGHRMVLYKHKIII 194
Query: 195 FGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGY 254
FGGFYDTLREVRYYNDLYVFDLDQ+KWQEIKP+ G+MWP+ RSGFQFFVYQDE+FLYGGY
Sbjct: 195 FGGFYDTLREVRYYNDLYVFDLDQYKWQEIKPKPGAMWPTARSGFQFFVYQDEIFLYGGY 254
Query: 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
SKEVS+ + SEKGI+H+DLWSLDPRTWEW+KVKKIGMPP RAGFS+CVHKKRALLFGG
Sbjct: 255 SKEVSS-EKSSEKGIVHADLWSLDPRTWEWNKVKKIGMPPSSRAGFSVCVHKKRALLFGG 313
Query: 315 VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEK 374
VVDMEM+GDV+MSLFLNELYGFQLDN RWYP+ELRKEKSTK K KK+ E KP +S
Sbjct: 314 VVDMEMEGDVMMSLFLNELYGFQLDNRRWYPIELRKEKSTKYKAKKNLEAKPVASN---- 369
Query: 375 LNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYES 434
+E D+ E+DE++ E++D + S+ D +S+ + + V DG + KS +
Sbjct: 370 ----NDDEMDSTEEDESSAMIEQSDGVGSS-DGISDRMAAGLTV-DGNRSDKSKALQ-GA 422
Query: 435 KKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLD 494
K + D Q S+ E++KPCGRINSCMVVGKDTLY+YGGMMEI D+E+TLDDLYSLNLSKLD
Sbjct: 423 KARLDPQVSVSEEVIKPCGRINSCMVVGKDTLYIYGGMMEIKDKEVTLDDLYSLNLSKLD 482
Query: 495 EWKCIIPASESEWVEASEGEDEDDDEDDSEDEGNGGSSSDETGDDDDDDEEDAEARDGDA 554
EWKCIIPA+E+EWVE SE E+ D+DED+ + E G S + DD+E+ EA D D
Sbjct: 483 EWKCIIPATETEWVEVSEDEEGDEDEDEDDSEDEGNSEESDE-----DDDEEVEAMDVD- 536
Query: 555 GSLQMGDAVAIIKGEGKNVRRKEKRARIEQIRANLGLSDSQRTPMPGESLKDFYRRTSMY 614
GS+++G+ VA+IKGEGK++RRKEKRARIEQIRANLGLSDSQRTP+PGE+LKDFY+RT+MY
Sbjct: 537 GSVKVGEVVAMIKGEGKSLRRKEKRARIEQIRANLGLSDSQRTPVPGETLKDFYKRTNMY 596
Query: 615 WQMAAHEHTQHTGK 628
WQMAA+EHTQHTGK
Sbjct: 597 WQMAAYEHTQHTGK 610
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|38345333|emb|CAE03144.2| OSJNBa0081L15.6 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 832 bits (2149), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/637 (68%), Positives = 513/637 (80%), Gaps = 25/637 (3%)
Query: 1 MGKKNKKAGKGKEKTERKTAKAEEKRARRETKKISPEDDIDAILLSIQKEEAKKKEVHVE 60
MGKK KK KGKEKTERKTAK EEKRARRE +K+ EDDIDAIL SIQKEEAKKKEVH++
Sbjct: 1 MGKKQKKPRKGKEKTERKTAKGEEKRARREARKVGEEDDIDAILRSIQKEEAKKKEVHID 60
Query: 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN 120
+NVPAPSPRSNCSL INPLK+TEL+LYGGEFYNG+KT+VYGDLYRYDVEK EWK++SSPN
Sbjct: 61 ENVPAPSPRSNCSLTINPLKDTELVLYGGEFYNGSKTFVYGDLYRYDVEKNEWKLVSSPN 120
Query: 121 SPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180
SPPPRSAHQ V+WKN +Y+FGGEFTSPNQERFHHYKDFW LDLKTNQWEQ+ KGCPS R
Sbjct: 121 SPPPRSAHQTVAWKNNIYMFGGEFTSPNQERFHHYKDFWSLDLKTNQWEQILAKGCPSAR 180
Query: 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240
SGHRMVLYKHKI++FGGFYDTLREVRYYNDL+VFDLD FKW+EIKPR G +WPSPRSGFQ
Sbjct: 181 SGHRMVLYKHKIVLFGGFYDTLREVRYYNDLHVFDLDNFKWEEIKPRPGCLWPSPRSGFQ 240
Query: 241 FFVYQDEVFLYGGYSKE-VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299
VYQD+++LYGGY KE VS+DK+ SEKG +H+D+W+LDPRTWEW+KVKK GMPPGPRAG
Sbjct: 241 LMVYQDQIYLYGGYFKEVVSSDKSASEKGTVHADMWTLDPRTWEWNKVKKTGMPPGPRAG 300
Query: 300 FSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLK 359
FSMCVHKKRA+LFGGVVDME++GDVIMS+F+NELYGFQLDNHRWYPLELRK+K K+K K
Sbjct: 301 FSMCVHKKRAVLFGGVVDMEIEGDVIMSMFMNELYGFQLDNHRWYPLELRKDKPAKNKTK 360
Query: 360 KSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVD 419
++P+++ E+ NE+DE E E +S + +S + S+ ++
Sbjct: 361 DIKRKEPSNN----------VEDNLGNEEDEIMEDSETTGG-QSEVHGVSNHLTKSLTLN 409
Query: 420 DGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQE 479
K+G + +LPE VKP GRIN+C+ VGKDTLY+YGGMME+ D+E
Sbjct: 410 ------KAGSGNSSDILSDSTTQEVLPEAVKPGGRINACLAVGKDTLYLYGGMMELKDRE 463
Query: 480 ITLDDLYSLNLSKLDEWKCIIPASESEWVEASEGEDEDDDEDDSEDEGNGGSSSDETGDD 539
ITLDD+YSLNLSKLDEWKCIIPASESEW+E SE ED++DD+DD + + ++ DD
Sbjct: 464 ITLDDMYSLNLSKLDEWKCIIPASESEWLEISEDEDDEDDDDDDNENDSEDDANQTDEDD 523
Query: 540 DDDDEEDAEARDGDAGSLQMGDAVAIIKGEGKNVRRKEKRARIEQIRANLGLSDSQRTPM 599
++ DE+ + D M AV++IKGE KN+RRKEKRARIEQIR LGLSDSQRTPM
Sbjct: 524 EESDEDAEKNVD-------MSTAVSLIKGERKNLRRKEKRARIEQIRVMLGLSDSQRTPM 576
Query: 600 PGESLKDFYRRTSMYWQMAAHEHTQHTGKVCFHFSFL 636
PGESLKDFY+RT MYWQMAA+EHTQHTGKV S L
Sbjct: 577 PGESLKDFYKRTDMYWQMAAYEHTQHTGKVAGSMSLL 613
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 643 | ||||||
| TAIR|locus:2177542 | 666 | AT5G50310 [Arabidopsis thalian | 0.718 | 0.693 | 0.722 | 2e-221 | |
| MGI|MGI:2384569 | 584 | Klhdc4 "kelch domain containin | 0.475 | 0.523 | 0.408 | 2.8e-82 | |
| ASPGD|ASPL0000047740 | 677 | AN2090 [Emericella nidulans (t | 0.373 | 0.354 | 0.378 | 2.4e-77 | |
| CGD|CAL0001573 | 638 | orf19.5009 [Candida albicans ( | 0.528 | 0.532 | 0.370 | 1.6e-70 | |
| UNIPROTKB|Q5AKW8 | 638 | KEL3 "Putative uncharacterized | 0.528 | 0.532 | 0.370 | 1.6e-70 | |
| SGD|S000006184 | 651 | KEL3 "Cytoplasmic protein of u | 0.674 | 0.666 | 0.307 | 1.6e-54 | |
| POMBASE|SPCC1223.06 | 1147 | tea1 "cell end marker Tea1" [S | 0.367 | 0.205 | 0.286 | 6.3e-18 | |
| DICTYBASE|DDB_G0268860 | 943 | rngB "Kelch repeat-containing | 0.354 | 0.241 | 0.261 | 4.4e-17 | |
| DICTYBASE|DDB_G0293006 | 1127 | gefF "Ras guanine nucleotide e | 0.323 | 0.184 | 0.262 | 4.5e-16 | |
| TAIR|locus:2014400 | 341 | ESP "epithiospecifier protein" | 0.410 | 0.774 | 0.266 | 7.4e-16 |
| TAIR|locus:2177542 AT5G50310 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1843 (653.8 bits), Expect = 2.0e-221, Sum P(2) = 2.0e-221
Identities = 344/476 (72%), Positives = 390/476 (81%)
Query: 34 ISPEDDIDAILLSIQXXXXXXXXXXXXDNVPAPSPRSNCSLNINPLKETELILYGGEFYN 93
+SPEDDIDAILL+IQ +NV APSPRSNCSL INPLKETELILYGGEFYN
Sbjct: 34 LSPEDDIDAILLNIQKEEAKKKEVHVEENVAAPSPRSNCSLTINPLKETELILYGGEFYN 93
Query: 94 GNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFH 153
G KTYVYGDLYRYDVEKQEWK++SSPNSPPPRS+HQAV+WKNYLYIFGGEFTSPNQERFH
Sbjct: 94 GQKTYVYGDLYRYDVEKQEWKLVSSPNSPPPRSSHQAVAWKNYLYIFGGEFTSPNQERFH 153
Query: 154 HYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213
HYKDFWMLD+KTNQWEQLNLKGCPSPRSGHRMVLYKHKII+FGGFYDTLREVRYYNDLYV
Sbjct: 154 HYKDFWMLDVKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIIFGGFYDTLREVRYYNDLYV 213
Query: 214 FDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSD 273
FDLDQ+KWQEIKP+ G+MWP+ RSGFQFFVYQDE+FLYGGYSKEVS++K+ SEKGI+H+D
Sbjct: 214 FDLDQYKWQEIKPKPGAMWPTARSGFQFFVYQDEIFLYGGYSKEVSSEKS-SEKGIVHAD 272
Query: 274 LWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNEL 333
LWSLDPRTWEW+KVKKIGMPP RAGFS+CVHKKRALLFGGVVDMEM+GDV+MSLFLNEL
Sbjct: 273 LWSLDPRTWEWNKVKKIGMPPSSRAGFSVCVHKKRALLFGGVVDMEMEGDVMMSLFLNEL 332
Query: 334 YGFQLDNHRWYPLELRXXXXXXXXXXXXXEQKPNSSALHEKLNPIEAEEFDAXXXXXXXX 393
YGFQLDN RWYP+ELR E KP +S ++++ E +E
Sbjct: 333 YGFQLDNRRWYPIELRKEKSSKDKAKKTLEAKPVASNNDDEMDSTEEDE---------SL 383
Query: 394 XXXXXXXXXSNIDNLSECVPNSVIVDDGVLAAKSGGKPYE-SKKKSDMQKSLLPEIVKPC 452
+ D +SE + ++ VD G + KS K + +K + D Q S+ E+VKPC
Sbjct: 384 AMIEQTDGVGSSDGISERMATNLTVD-GNRSDKS--KALQGAKTRLDPQVSVSEEVVKPC 440
Query: 453 GRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIPASESEWV 508
GRINSCMVVGKDTLY+YGGMMEI D+E+TLDDLYSLNLSKLDEWKCIIP +E+EWV
Sbjct: 441 GRINSCMVVGKDTLYIYGGMMEIKDKEVTLDDLYSLNLSKLDEWKCIIPTTETEWV 496
|
|
| MGI|MGI:2384569 Klhdc4 "kelch domain containing 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 654 (235.3 bits), Expect = 2.8e-82, Sum P(3) = 2.8e-82
Identities = 132/323 (40%), Positives = 192/323 (59%)
Query: 37 EDDIDAILLSIQXXXXXXXXXXXXDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNK 96
E+D++A++ Q P PSPR N SL+ +P K+ ELIL+GGE++NG K
Sbjct: 33 EEDLEALIAHFQTLDAKKTQVTETP-CPPPSPRLNASLSAHPEKD-ELILFGGEYFNGQK 90
Query: 97 TYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAV---SWKNYLYIFGGEFTSPNQERFH 153
T++Y +LY Y + K W + P PP R AHQAV L++FGGEF SP+ E+F+
Sbjct: 91 TFMYNELYIYSIRKDTWTKVDIPGPPPRRCAHQAVVVPQGGGQLWVFGGEFASPDGEQFY 150
Query: 154 HYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213
HYKD W+L L T WEQ+ G PS RSGHRMV +K ++I+FGGF+++ R+ YY+D+Y
Sbjct: 151 HYKDLWVLHLATKTWEQIRSTGGPSGRSGHRMVAWKRQLILFGGFHESARDYIYYSDVYT 210
Query: 214 FDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHS 272
F LD F+W ++ P G+ P+PRSG V Q + +YGGYSK+ K +KG HS
Sbjct: 211 FSLDTFQWSKLSPS-GA-GPTPRSGCLMAVTPQGSIAIYGGYSKQ--RVKKDVDKGTQHS 266
Query: 273 DLWSLDPRT-----WEWSKVKKIGMPPGPRAGFSMCVHKKRALL-FGGVVDMEMKGDVIM 326
D++ L P W W+++ G+ P R+GFS+ V +L FGGV D E + + +
Sbjct: 267 DMFLLKPAEGGEGKWAWTRINPSGVKPTARSGFSVAVAPNHQILVFGGVCDEEEE-ESLE 325
Query: 327 SLFLNELYGFQLDNHRWYPLELR 349
F ++LY + RW+ +L+
Sbjct: 326 GSFFSDLYIYDAAKSRWFAAQLK 348
|
|
| ASPGD|ASPL0000047740 AN2090 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 467 (169.5 bits), Expect = 2.4e-77, Sum P(4) = 2.4e-77
Identities = 97/256 (37%), Positives = 143/256 (55%)
Query: 37 ED-DIDAILLSIQXXXXXXXXXXXXDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGN 95
ED D+DAIL + P PSPRS+ ++ +P EL+++GGE+++G
Sbjct: 42 EDADLDAILAQYAEEQARFLKVTEVVSGP-PSPRSSATVLASPSNRNELLIFGGEYFDGT 100
Query: 96 KTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNY--LYIFGGEFTSPNQERFH 153
Y +L+ Y +++ EW+ ++SPNSP PRS H N +Y+FGGEF+SP Q F+
Sbjct: 101 LATFYNNLFVYLIDRGEWREVTSPNSPLPRSGHAWCRGGNTGGIYLFGGEFSSPKQGTFY 160
Query: 154 HYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLY 212
HY DFW LD T +W ++ KG P RSGHRM +K+ II+FGGF DT ++ +Y DL+
Sbjct: 161 HYNDFWHLDPSTREWSRIETKGKGPPARSGHRMTYFKNYIILFGGFQDTSQQTKYLQDLW 220
Query: 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSK-EVSTDKN-QSEKG-- 268
++D ++ W S P PRS F ++ LYGGYS+ +V+ +S KG
Sbjct: 221 IYDCSKYTWYNPVLSTASQKPDPRSSSSFLPHESGAVLYGGYSRVKVTAGAGGKSAKGGP 280
Query: 269 -------IIHSDLWSL 277
++H D W L
Sbjct: 281 QRMTMKPMVHQDTWFL 296
|
|
| CGD|CAL0001573 orf19.5009 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 589 (212.4 bits), Expect = 1.6e-70, Sum P(3) = 1.6e-70
Identities = 130/351 (37%), Positives = 190/351 (54%)
Query: 37 EDDIDAILLSIQXXXXXXXXXXXXDNVPAPSPRSNCSLNINPL-KETELILYGGEFYNGN 95
+DDIDAIL P+ R N ++ NPL + ELIL+GGE +G
Sbjct: 46 DDDIDAILEKYAKEQLEFTEIKIEICDHHPTKRLNPTMVSNPLHNKRELILFGGENTDGG 105
Query: 96 KTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKN-YLYIFGGEFTSPNQERFHH 154
+ Y DLY Y ++ W+ ISS NSP PRS+H S + + +FGGEF+SP Q F+H
Sbjct: 106 HSKFYNDLYTYSIDNDTWRKISSKNSPLPRSSHAMCSHPSGIILMFGGEFSSPKQSTFYH 165
Query: 155 YKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214
Y D W+LD T +W++++ K PS RSGHR+ ++K+ II+ GGF D Y ND+++F
Sbjct: 166 YGDTWILDADTKEWQKIDSKKGPSARSGHRLAVWKNYIILHGGFRDLGTMTTYLNDVWLF 225
Query: 215 DLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDL 274
D+ +FKW +++ P RSG + +YGGY+K + K +KG + +D
Sbjct: 226 DVTEFKWTQVEFPPNHPIPDARSGHSLLPCSEGAVIYGGYTK-IKAKKGL-QKGKVLNDC 283
Query: 275 WSL----DPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFL 330
W L DP+ + + KK G P PR G S+ HK R +LFGGV D E + + S F
Sbjct: 284 WILKMKSDPKAVRFERRKKQGTLPSPRVGCSLVYHKNRGMLFGGVYDFEESEENLDSEFY 343
Query: 331 NELYGFQLDNHRWYPLELRXXXXXXXXXXXXXEQKPNSSALHEKLNPIEAE 381
N+LY + ++++RWY L L+ ++K L E LN I A+
Sbjct: 344 NQLYTYHIESNRWYNLHLKPQRKKKKETI---KEKTRDEDLEEILNSILAK 391
|
|
| UNIPROTKB|Q5AKW8 KEL3 "Putative uncharacterized protein KEL3" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 589 (212.4 bits), Expect = 1.6e-70, Sum P(3) = 1.6e-70
Identities = 130/351 (37%), Positives = 190/351 (54%)
Query: 37 EDDIDAILLSIQXXXXXXXXXXXXDNVPAPSPRSNCSLNINPL-KETELILYGGEFYNGN 95
+DDIDAIL P+ R N ++ NPL + ELIL+GGE +G
Sbjct: 46 DDDIDAILEKYAKEQLEFTEIKIEICDHHPTKRLNPTMVSNPLHNKRELILFGGENTDGG 105
Query: 96 KTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKN-YLYIFGGEFTSPNQERFHH 154
+ Y DLY Y ++ W+ ISS NSP PRS+H S + + +FGGEF+SP Q F+H
Sbjct: 106 HSKFYNDLYTYSIDNDTWRKISSKNSPLPRSSHAMCSHPSGIILMFGGEFSSPKQSTFYH 165
Query: 155 YKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214
Y D W+LD T +W++++ K PS RSGHR+ ++K+ II+ GGF D Y ND+++F
Sbjct: 166 YGDTWILDADTKEWQKIDSKKGPSARSGHRLAVWKNYIILHGGFRDLGTMTTYLNDVWLF 225
Query: 215 DLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDL 274
D+ +FKW +++ P RSG + +YGGY+K + K +KG + +D
Sbjct: 226 DVTEFKWTQVEFPPNHPIPDARSGHSLLPCSEGAVIYGGYTK-IKAKKGL-QKGKVLNDC 283
Query: 275 WSL----DPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFL 330
W L DP+ + + KK G P PR G S+ HK R +LFGGV D E + + S F
Sbjct: 284 WILKMKSDPKAVRFERRKKQGTLPSPRVGCSLVYHKNRGMLFGGVYDFEESEENLDSEFY 343
Query: 331 NELYGFQLDNHRWYPLELRXXXXXXXXXXXXXEQKPNSSALHEKLNPIEAE 381
N+LY + ++++RWY L L+ ++K L E LN I A+
Sbjct: 344 NQLYTYHIESNRWYNLHLKPQRKKKKETI---KEKTRDEDLEEILNSILAK 391
|
|
| SGD|S000006184 KEL3 "Cytoplasmic protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
Identities = 145/471 (30%), Positives = 227/471 (48%)
Query: 37 EDDIDAILLSIQXXXXXXXXXXXXDNVPAPSPRSNCSLNINPL-KETELILYGGEFYNGN 95
+ D+D IL S +V PS R++ + NP + EL ++GGEF +
Sbjct: 48 DQDLDEILSSFSKKQIELEHVDIT-SVEKPSCRTHPLMFANPQHNKHELFIFGGEFTDPE 106
Query: 96 K--TYVYGDLYRYDVEKQEWKVISSPNSPPPRS-AHQAVSWKNYLYIFGGEFTSPNQERF 152
T+ Y DLY Y ++ WK S N+P PRS A AV + GGEF+SP Q +F
Sbjct: 107 TKLTHFYNDLYSYSIKNNSWKKYVSQNAPLPRSSAAVAVHPSGIALLHGGEFSSPKQSKF 166
Query: 153 HHYKDFWMLDLKTNQWEQLNLKG---CPSPRSGHRMVLYKHKIIVFGGFYDTLR-EVRYY 208
+HY D W+ D ++ +L G PS RSGHR++ +K+ I+FGGF D + Y
Sbjct: 167 YHYSDTWLFDCVERKFTKLEFGGRDSSPSARSGHRIIAWKNYFILFGGFRDLGNGQTSYL 226
Query: 209 NDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKG 268
NDL+ FD+ +KW +++ + P RSG F + L GGY K ++ + KG
Sbjct: 227 NDLWCFDISTYKWTKLET---NSKPDARSGHCFIPTDNSAILMGGYCKIIAKNNKNLMKG 283
Query: 269 IIHSDLWSL----DPRTWEWSKVKKIGMPPGPRAGFSMCVHKK-RALLFGGVVDMEMKGD 323
I +D W L DP+ W+W K+K P PR G+S + K+ +++ FGGV D++ +
Sbjct: 284 KILNDAWKLNLTPDPKKWQWEKLKNFKNQPSPRVGYSFNLWKQNKSVAFGGVYDLQETEE 343
Query: 324 VIMSLFLNELYGFQLDNHRWYPLELRXXXXXXXXXXXXXEQKPNSSALHEKLNPIEAEEF 383
+ S+F N+LY F L+ ++W L ++ + P +S K N + +E
Sbjct: 344 SLESVFYNDLYMFHLELNKWSKLRIKPQRQTNS------KNSPATSK--RKSNKDQEKEL 395
Query: 384 DAXXXXXXXXXXXXXXXXXSNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKS 443
N DN S PNS+ DD + E D Q+
Sbjct: 396 Q-DLLNSILAKSNLNDDDDDNDDN-STTGPNSI--DDD--------EDNEDDSDLDNQED 443
Query: 444 LLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLD 494
+ P R N+ V D+L++Y G+ E+ +++ ++ YS++L+KLD
Sbjct: 444 ITISNQLPHPRFNAATCVVGDSLFIYSGVWELGEKDYPINSFYSIDLNKLD 494
|
|
| POMBASE|SPCC1223.06 tea1 "cell end marker Tea1" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 252 (93.8 bits), Expect = 6.3e-18, P = 6.3e-18
Identities = 77/269 (28%), Positives = 125/269 (46%)
Query: 83 ELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISS-PNSPPPRSAHQAVSWKNYLYIFG 141
E+ ++GG + + DL+ ++ ++ + S +P PR H ++ N +FG
Sbjct: 94 EIYIFGGV---ASDSQPKNDLWVLNLATSQFTSLRSLGETPSPRLGHASILIGNAFIVFG 150
Query: 142 GEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFYD 200
G +R + ++L+ + W++ N G PS R GH + KI +FGG
Sbjct: 151 GLTNHDVADRQDN--SLYLLNTSSLVWQKANASGARPSGRYGHTISCLGSKICLFGG--- 205
Query: 201 TLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW--PSP-RSGFQFFVYQDEVFLYGGYSKE 257
L + Y+NDL FDL+ + + S+ P P R+G F + D+++++GG
Sbjct: 206 RLLDY-YFNDLVCFDLNNLNTSDSRWELASVVNDPPPARAGHVAFTFSDKLYIFGG---- 260
Query: 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVD 317
TD +DLW P+ WSKV+ G+ P PRAG + V + +FGG
Sbjct: 261 --TDGAN-----FFNDLWCYHPKQSAWSKVETFGVAPNPRAGHAASVVEGILYVFGG--- 310
Query: 318 MEMKGDVIMSLFLNELYGFQLDNHRWYPL 346
D FLN+LY F+L + WY L
Sbjct: 311 --RASD---GTFLNDLYAFRLSSKHWYKL 334
|
|
| DICTYBASE|DDB_G0268860 rngB "Kelch repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 247 (92.0 bits), Expect = 4.4e-17, Sum P(2) = 4.4e-17
Identities = 69/264 (26%), Positives = 128/264 (48%)
Query: 92 YNGNKTYVYGDLYRYDVEKQEW-KVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTS---P 147
+ GN + D+ Y++ W K+ + N+P R H AV +++ + +
Sbjct: 34 FGGNSNRAFNDIQYYNIFNNSWSKIEAVGNAPSERYGHSAVLYQSQSRPYSDSYQIIFFG 93
Query: 148 NQERFHHYKDFWMLDLKTNQ---WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLRE 204
+ + D +L + +N+ W+Q+ K R+GH V+Y+ ++VFGG + +
Sbjct: 94 GRATSKPFSDINILYVNSNRSFIWKQVTTKSIEG-RAGHTAVVYRQNLVVFGGHNN--HK 150
Query: 205 VRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFF-VYQDEVFLYGGYSKEVSTDKN 263
+YYN + +F L+ +W++ G + PS R+ F V +++F++GGY
Sbjct: 151 SKYYNSVLLFSLESNEWRQ--QVCGGVIPSARATHSTFQVNNNKMFIFGGYD-------- 200
Query: 264 QSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC-VHKKRALLFGGVVDMEMKG 322
+K ++D++ LD TW W KV+ G PP PR+G S + + ++FGG
Sbjct: 201 -GKK--YYNDIYYLDLETWIWKKVEAKGTPPKPRSGHSATMIQNNKLMIFGGC-----GS 252
Query: 323 DVIMSLFLNELYGFQLDN---HRW 343
D S FLN+++ ++ +RW
Sbjct: 253 D---SNFLNDIHILHIEGANEYRW 273
|
|
| DICTYBASE|DDB_G0293006 gefF "Ras guanine nucleotide exchange factor" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 235 (87.8 bits), Expect = 4.5e-16, P = 4.5e-16
Identities = 61/232 (26%), Positives = 111/232 (47%)
Query: 86 LYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFT 145
L+GG +G+ T D Y + + W +++ ++P R+ H V + N +YIFGG
Sbjct: 215 LFGGTLPDGSYT---NDFYTFQFAIKAWTILTFGSAPSIRTRHTGVLYNNSMYIFGGY-- 269
Query: 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFY--DTL 202
SP+ + D ++ T W ++ +G PSPR GH V+ +IVFGG T
Sbjct: 270 SPSGPK----NDIYVFSFDTQTWSEVQTEGTKPSPRYGHTAVVESGHMIVFGGISCDQTT 325
Query: 203 REVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDK 262
++ ND++ +LD +W ++ + PSPR+ +++ ++++GG ++
Sbjct: 326 KQQTVNNDIFSLNLDTKQWSQV---LSTCPPSPRTHHTATMHKGNMYVFGGQDQQ----S 378
Query: 263 NQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
NQ E I+H W+ + W ++ G PR+ S + + + GG
Sbjct: 379 NQVED-IVHCYTWASN----SWKSIQFEGSSMTPRSDHSAVLFQDSIFISGG 425
|
|
| TAIR|locus:2014400 ESP "epithiospecifier protein" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 212 (79.7 bits), Expect = 7.4e-16, Sum P(2) = 7.4e-16
Identities = 77/289 (26%), Positives = 125/289 (43%)
Query: 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPR 125
P PRS S I + + +L +GGE NK ++ DLY +D Q W + P
Sbjct: 20 PGPRS--SHGIAAVGD-KLYSFGGEL-TPNK-HIDKDLYVFDFNTQTWSIAQPKGDAPTV 74
Query: 126 SAH--QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWE---QLNLKGCPSPR 180
S + V+ +YIFGG + N E F Y D T++W +L+ G P R
Sbjct: 75 SCLGVRMVAVGTKIYIFGGRDENRNFENFRSY------DTVTSEWTFLTKLDEVGGPEAR 128
Query: 181 SGHRMVLYKHKIIVFGGFYD--TLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG 238
+ H M ++ + VFGG T+ + + +++ KW ++ P G + R G
Sbjct: 129 TFHSMASDENHVYVFGGVSKGGTMNTPTRFRTIEAYNIADGKWAQL-PDPGDNFEK-RGG 186
Query: 239 FQFFVYQDEVFL-YGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPR 297
F V Q ++++ YG + V K+ E + DP + +W++V+ G P R
Sbjct: 187 AGFAVVQGKIWVVYGFATSIVPGGKDDYESNAVQF----YDPASKKWTEVETTGAKPSAR 242
Query: 298 AGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346
+ F+ V K ++F G V ++ G NE Y + W L
Sbjct: 243 SVFAHAVVGKYIIIFAGEVWPDLNGHYGPGTLSNEGYALDTETLVWEKL 291
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 643 | |||
| PLN02153 | 341 | PLN02153, PLN02153, epithiospecifier protein | 6e-17 | |
| PLN02193 | 470 | PLN02193, PLN02193, nitrile-specifier protein | 3e-15 | |
| PLN02153 | 341 | PLN02153, PLN02153, epithiospecifier protein | 1e-11 | |
| pfam13422 | 99 | pfam13422, DUF4110, Domain of unknown function (DU | 3e-11 | |
| pfam13415 | 48 | pfam13415, Kelch_3, Galactose oxidase, central dom | 4e-09 | |
| pfam13854 | 42 | pfam13854, Kelch_5, Kelch motif | 1e-08 | |
| pfam13854 | 42 | pfam13854, Kelch_5, Kelch motif | 6e-08 | |
| pfam13415 | 48 | pfam13415, Kelch_3, Galactose oxidase, central dom | 2e-06 | |
| pfam13418 | 49 | pfam13418, Kelch_4, Galactose oxidase, central dom | 2e-06 | |
| TIGR03547 | 346 | TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | 2e-06 | |
| pfam02724 | 583 | pfam02724, CDC45, CDC45-like protein | 6e-06 | |
| pfam13415 | 48 | pfam13415, Kelch_3, Galactose oxidase, central dom | 9e-06 | |
| pfam13415 | 48 | pfam13415, Kelch_3, Galactose oxidase, central dom | 1e-05 | |
| pfam13964 | 50 | pfam13964, Kelch_6, Kelch motif | 2e-05 | |
| pfam13854 | 42 | pfam13854, Kelch_5, Kelch motif | 3e-05 | |
| PHA03098 | 534 | PHA03098, PHA03098, kelch-like protein; Provisiona | 4e-05 | |
| TIGR03547 | 346 | TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | 5e-05 | |
| TIGR03548 | 323 | TIGR03548, mutarot_permut, cyclically-permuted mut | 5e-05 | |
| PRK14131 | 376 | PRK14131, PRK14131, N-acetylneuraminic acid mutaro | 8e-05 | |
| pfam13854 | 42 | pfam13854, Kelch_5, Kelch motif | 1e-04 | |
| pfam01344 | 46 | pfam01344, Kelch_1, Kelch motif | 1e-04 | |
| pfam13418 | 49 | pfam13418, Kelch_4, Galactose oxidase, central dom | 2e-04 | |
| pfam13418 | 49 | pfam13418, Kelch_4, Galactose oxidase, central dom | 2e-04 | |
| pfam13964 | 50 | pfam13964, Kelch_6, Kelch motif | 2e-04 | |
| pfam13964 | 50 | pfam13964, Kelch_6, Kelch motif | 2e-04 | |
| PHA03098 | 534 | PHA03098, PHA03098, kelch-like protein; Provisiona | 2e-04 | |
| pfam01344 | 46 | pfam01344, Kelch_1, Kelch motif | 2e-04 | |
| TIGR03547 | 346 | TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | 8e-04 | |
| pfam13418 | 49 | pfam13418, Kelch_4, Galactose oxidase, central dom | 0.001 | |
| pfam05327 | 554 | pfam05327, RRN3, RNA polymerase I specific transcr | 0.001 | |
| pfam07646 | 48 | pfam07646, Kelch_2, Kelch motif | 0.001 | |
| PRK05901 | 509 | PRK05901, PRK05901, RNA polymerase sigma factor; P | 0.001 | |
| pfam04147 | 809 | pfam04147, Nop14, Nop14-like family | 0.001 | |
| TIGR03547 | 346 | TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | 0.002 | |
| pfam07646 | 48 | pfam07646, Kelch_2, Kelch motif | 0.002 | |
| pfam06213 | 282 | pfam06213, CobT, Cobalamin biosynthesis protein Co | 0.002 | |
| PRK14131 | 376 | PRK14131, PRK14131, N-acetylneuraminic acid mutaro | 0.003 | |
| pfam04147 | 809 | pfam04147, Nop14, Nop14-like family | 0.004 |
| >gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein | Back alignment and domain information |
|---|
Score = 82.3 bits (203), Expect = 6e-17
Identities = 76/287 (26%), Positives = 132/287 (45%), Gaps = 27/287 (9%)
Query: 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPR 125
P PR CS I + + +L +GGE N+ ++ DLY +D W I+ N PR
Sbjct: 20 PGPR--CSHGIAVVGD-KLYSFGGEL-KPNE-HIDKDLYVFDFNTHTWS-IAPANGDVPR 73
Query: 126 SAH---QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWE---QLNLKGCPSP 179
+ + V+ LYIFGG +++R + DF+ D N+W +L+ +G P
Sbjct: 74 ISCLGVRMVAVGTKLYIFGGR----DEKR--EFSDFYSYDTVKNEWTFLTKLDEEGGPEA 127
Query: 180 RSGHRMVLYKHKIIVFGGFYD--TLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237
R+ H M ++ + VFGG ++ + + +++ KW ++ P G + R
Sbjct: 128 RTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQL-PDPGENF-EKRG 185
Query: 238 GFQFFVYQDEVFL-YGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGP 296
G F V Q ++++ YG + + K+ E + DP + +W++V+ G P
Sbjct: 186 GAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQF----FDPASGKWTEVETTGAKPSA 241
Query: 297 RAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343
R+ F+ V K ++FGG V ++KG + NE Y + W
Sbjct: 242 RSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVW 288
|
Length = 341 |
| >gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein | Back alignment and domain information |
|---|
Score = 78.5 bits (193), Expect = 3e-15
Identities = 73/273 (26%), Positives = 115/273 (42%), Gaps = 32/273 (11%)
Query: 55 KEVHVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK 114
K + VE P R CS I + ++ +GGEF + LY +D+E + W
Sbjct: 152 KWIKVEQKGEGPGLR--CSHGIAQVG-NKIYSFGGEFTPNQP--IDKHLYVFDLETRTWS 206
Query: 115 VISSPNSPPPRS--AHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLN 172
+ + P S + VS + LY+FGG S Y F+ D TN+W+ L
Sbjct: 207 ISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDAS------RQYNGFYSFDTTTNEWKLLT 260
Query: 173 -LKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSM 231
++ P+PRS H M + + VFGG T R L +++ KW S
Sbjct: 261 PVEEGPTPRSFHSMAADEENVYVFGGVSATAR----LKTLDSYNIVDKKWFHCSTPGDSF 316
Query: 232 WPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG 291
S R G V Q +V++ G++ G D+ DP +W++V+ G
Sbjct: 317 --SIRGGAGLEVVQGKVWVVYGFN------------GCEVDDVHYYDPVQDKWTQVETFG 362
Query: 292 MPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDV 324
+ P R+ F+ K ++FGG + M+ V
Sbjct: 363 VRPSERSVFASAAVGKHIVIFGGEIAMDPLAHV 395
|
Length = 470 |
| >gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 1e-11
Identities = 66/247 (26%), Positives = 102/247 (41%), Gaps = 36/247 (14%)
Query: 94 GNKTYVYG---------DLYRYDVEKQEWKVISSPN---SPPPRSAHQAVSWKNYLYIFG 141
G K Y++G D Y YD K EW ++ + P R+ H S +N++Y+FG
Sbjct: 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFG 144
Query: 142 GEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP------RSGHRMVLYKHKIIVF 195
G + ++ ++ +W QL P P R G + + KI V
Sbjct: 145 GVSKGGLMKTPERFRTIEAYNIADGKWVQL-----PDPGENFEKRGGAGFAVVQGKIWVV 199
Query: 196 GGFYDTL----REVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLY 251
GF ++ + N + FD KW E++ PS RS F V + ++
Sbjct: 200 YGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAK--PSARSVFAHAVVGKYIIIF 257
Query: 252 GGYSKEVSTD-KNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPR---AGFSMCVHKK 307
GG EV D K G + ++ ++LD T W K+ + G P PR A + V+ K
Sbjct: 258 GG---EVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGK 314
Query: 308 RALLFGG 314
LL G
Sbjct: 315 NGLLMHG 321
|
Length = 341 |
| >gnl|CDD|222117 pfam13422, DUF4110, Domain of unknown function (DUF4110) | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 3e-11
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 587 ANLGLSDSQRTPMPGESLKDFYRRTSMYWQMAAHEHTQ---HTGK 628
GL DS TP P ESL+DF+ RTS YWQ A E + +GK
Sbjct: 1 EQPGLDDSLPTPRPFESLRDFFARTSAYWQEIAMESLRDAELSGK 45
|
This is a family that is found predominantly at the C-terminus of Kelch-containing proteins. However, the exact function of this region is not known. Length = 99 |
| >gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 4e-09
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY 188
+Y+FGG R D W+ DL TN WE+ L P PR+GH +
Sbjct: 1 GGKIYVFGGL--GDGGTR---LNDLWVYDLDTNTWEK--LGDLPGPRAGHAATVI 48
|
Length = 48 |
| >gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 1e-08
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 177 PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219
P PR+ H V+ +I ++GG+ T + +D+YV L F
Sbjct: 2 PVPRANHCAVVVGGEIYLYGGY--TSGNGQSSDDVYVLSLPGF 42
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 42 |
| >gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 6e-08
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 122 PPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN 166
P PR+ H AV +Y++GG +TS N + D ++L L
Sbjct: 2 PVPRANHCAVVVGGEIYLYGG-YTSGNGQ---SSDDVYVLSLPGF 42
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 42 |
| >gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-06
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY 244
KI VFGG D NDL+V+DLD W+++ P PR+G V
Sbjct: 1 GGKIYVFGGLGDG---GTRLNDLWVYDLDTNTWEKLGD-----LPGPRAGHAATVI 48
|
Length = 48 |
| >gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-06
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 124 PRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL 171
PR+ H + S LY+FGGE D W+ DL TN W +L
Sbjct: 1 PRAYHTSTSIGDGRLYLFGGENED-----GSVLSDVWVFDLSTNTWTRL 44
|
Length = 49 |
| >gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 59/289 (20%), Positives = 104/289 (35%), Gaps = 58/289 (20%)
Query: 84 LILYGGEFYNGNK--TYVYGDLYRYDVEKQEWKVISSPNSPPPRS--AHQAVSWKN-YLY 138
L ++GG ++ V+ D+YRYD +K W+ + ++ P S N Y
Sbjct: 66 LYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKL---DTRSPVGLLGASGFSLHNGQAY 122
Query: 139 IFGG-----------------EFTSPNQERFHHY-----------KDFWMLDLKTNQWEQ 170
GG + + P + Y K+ D TNQW
Sbjct: 123 FTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWR- 181
Query: 171 LNLKGCP-SPRSGHRMVLYKHKIIVFGG-FYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228
NL P +G +V +K+++ G LR Y+F + +W ++ P
Sbjct: 182 -NLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVK--QYLFTGGKLEWNKLPPLP 238
Query: 229 GSMWPSPR--SGFQFFVYQDEVFLYGGYS-----KEVSTDKNQSEKGII---HSDLWSLD 278
S +G + + + GG + + K + +G+I S++++LD
Sbjct: 239 PPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALD 298
Query: 279 PRTWEWSKVKKIGMPPGPRA-GFSMCVHKKRALLFGGVVDMEMKGDVIM 326
W K+G P A G S+ + L+ G + DV +
Sbjct: 299 NGKW-----SKVGKLPQGLAYGVSVSWNNGVLLIGGENSGGKAVTDVYL 342
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. Length = 346 |
| >gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 6e-06
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 20/109 (18%)
Query: 476 NDQEITLDDLYSLNLSKLDEWKCIIPASESEWVEASEGEDEDDDEDDSEDEGNGGSSSDE 535
+DQ + DD ++E P + + E +D+DD+E D EDE + S DE
Sbjct: 95 SDQVVIFDD------GDIEEELQDEPRYDDAY-RDLEEDDDDDEESDEEDEESSKSEDDE 147
Query: 536 TGDDDDDDEEDAEARDGDAGSLQMGDAVAIIKGEGKNVRRKEKRARIEQ 584
DDDDDD++ A + +EKRA +E
Sbjct: 148 DDDDDDDDDDIATRERSLERRRRR-------------REWEEKRAELEF 183
|
CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583 |
| >gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 9e-06
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 83 ELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS 132
++ ++GG T DL+ YD++ W+ + P PR+ H A
Sbjct: 3 KIYVFGG--LGDGGTR-LNDLWVYDLDTNTWEKLGDL--PGPRAGHAATV 47
|
Length = 48 |
| >gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 1e-05
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 13/60 (21%)
Query: 246 DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305
+++++GG + G +DLW D T W +K+G PGPRAG + V
Sbjct: 2 GKIYVFGGLG----------DGGTRLNDLWVYDLDTNTW---EKLGDLPGPRAGHAATVI 48
|
Length = 48 |
| >gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 2e-05
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 124 PRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180
PR+ H AVS +Y+FGG + D +T WE+L P+PR
Sbjct: 1 PRTGHSAVSVGGKIYVFGGYSNGSK-----ASNKVLVYDPETGSWEKLP--PLPTPR 50
|
Length = 50 |
| >gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 3e-05
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 451 PCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNL 490
P R N C VV +Y+YGG + + DD+Y L+L
Sbjct: 2 PVPRANHCAVVVGGEIYLYGGY--TSGNGQSSDDVYVLSL 39
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 42 |
| >gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 4e-05
Identities = 46/199 (23%), Positives = 74/199 (37%), Gaps = 28/199 (14%)
Query: 92 YNGNKTYV----YGDLYRYDVEKQEWKVISS-----PNSPPPRSAHQAVSWKNYLYIFGG 142
N+ YV Y + VE WK S P PR V+ N +Y+ GG
Sbjct: 340 VFNNRIYVIGGIYNSISLNTVES--WKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGG 397
Query: 143 EFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGF-YDT 201
+ K L TN+W + + P G + + KI V GG Y
Sbjct: 398 IS-----KNDELLKTVECFSLNTNKWSKGS--PLPISHYGGCAIYHDGKIYVIGGISYID 450
Query: 202 LREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTD 261
+V YN + ++ KW E+ S PR ++ +++++ GG E
Sbjct: 451 NIKV--YNIVESYNPVTNKWTEL-----SSLNFPRINASLCIFNNKIYVVGGDKYEYYI- 502
Query: 262 KNQSEKGIIHSDLWSLDPR 280
N+ E ++ W+L +
Sbjct: 503 -NEIEVYDDKTNTWTLFCK 520
|
Length = 534 |
| >gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 5e-05
Identities = 41/193 (21%), Positives = 77/193 (39%), Gaps = 47/193 (24%)
Query: 156 KDFWMLDLK--TNQWEQL-NLKGCPSPRSGHRMVLYKHKIIVFGGF--YDTLREVRYYND 210
++ LDLK + W+++ + G P R+ K+ VFGG ++ + ++D
Sbjct: 29 TSWYKLDLKKPSKGWQKIADFPGGP--RNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDD 86
Query: 211 LYVFDLDQFKWQEIKPRFGSMWPSPR-----SGFQFFVYQDEVFLYGGYSKE-------- 257
+Y +D + WQ++ SP SGF ++ + + GG +K
Sbjct: 87 VYRYDPKKNSWQKL------DTRSPVGLLGASGFS--LHNGQAYFTGGVNKNIFDGYFAD 138
Query: 258 -VSTDKNQS-EKGIIHS-------------DLWSLDPRTWEWSKVKKIGMPPG-PRAGFS 301
+ DK+ + +I + ++ S DP T +W + G P AG +
Sbjct: 139 LSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNL---GENPFLGTAGSA 195
Query: 302 MCVHKKRALLFGG 314
+ + LL G
Sbjct: 196 IVHKGNKLLLING 208
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. Length = 346 |
| >gnl|CDD|211835 TIGR03548, mutarot_permut, cyclically-permuted mutarotase family protein | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 5e-05
Identities = 61/282 (21%), Positives = 104/282 (36%), Gaps = 48/282 (17%)
Query: 83 ELILYGGEFY------NGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNY 136
+++ GG + G K Y +Y D E K + + P + ++S +N
Sbjct: 15 RILVAGGCNFPEKPVAEGGKKKYYKGIYTLDDEDSNLKWVKAGQLPYAAAYGASISTENG 74
Query: 137 LYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS-PRSGHRMV-LYKHKIIV 194
+Y GG S + E F + + L E L ++ PS P + YK +
Sbjct: 75 IYYIGG---SNSSESF---SSVYRITLD-ESKEALIIETLPSLPFAMDNGSATYKDGKLY 127
Query: 195 FGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWP-SPRSGFQFFVYQDEVFLYGG 253
GG + N Y F+L+ +W+E P F P +PR Q+E++++GG
Sbjct: 128 VGG---GNANGKPSNKFYCFNLETQEWEE-LPDF----PGAPRVQPVCVKLQNELYVFGG 179
Query: 254 YSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRA---GFSMCVHKKRAL 310
TD + P+T W KV P + S+ +++ L
Sbjct: 180 GDNIAYTDG------------YKYSPKTGTWEKVADPLSDGEPISLLGAASIAINESLLL 227
Query: 311 LFGG---------VVDMEMKGDVIMSLFLNELYGFQLDNHRW 343
GG V+ + D + + E + D +RW
Sbjct: 228 CIGGFNYDVFNDAVIRLATMKDESLKSYAAEYFLHPPDWYRW 269
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. Length = 323 |
| >gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 8e-05
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 18/116 (15%)
Query: 94 GNKTYVYG------DLYRYDVEKQE--WKVISS-PNSPPPRSAHQAVSWKNYLYIFGGEF 144
N YV G Y+ D+ W I++ P PR A LY+FGG
Sbjct: 38 NNTVYV-GLGSAGTSWYKLDLNAPSKGWTKIAAFPG--GPREQAVAAFIDGKLYVFGGIG 94
Query: 145 TSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRS--GHRMV-LYKHKIIVFGG 197
+ ++ + D + D KTN W++L+ + SP GH V L+ K + GG
Sbjct: 95 KTNSEGSPQVFDDVYKYDPKTNSWQKLDTR---SPVGLAGHVAVSLHNGKAYITGG 147
|
Length = 376 |
| >gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 1e-04
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 9/50 (18%)
Query: 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW 282
P PR+ V E++LYGGY+ S G D++ L +
Sbjct: 2 PVPRANHCAVVVGGEIYLYGGYT---------SGNGQSSDDVYVLSLPGF 42
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 42 |
| >gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 1e-04
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226
PRSG +V+ KI V GG+ + + + V+D + W ++
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGG----QSLSSVEVYDPETNTWSKLPS 44
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46 |
| >gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 2e-04
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 68 PRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNS 121
PR+ + + + L L+GGE +G V D++ +D+ W + S S
Sbjct: 1 PRAYHTST--SIGDGRLYLFGGENEDG---SVLSDVWVFDLSTNTWTRLPSLPS 49
|
Length = 49 |
| >gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 2e-04
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 179 PRSGHRMV-LYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226
PR+ H + ++ +FGG + + +D++VFDL W +
Sbjct: 1 PRAYHTSTSIGDGRLYLFGGENE---DGSVLSDVWVFDLSTNTWTRLPS 46
|
Length = 49 |
| >gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 2e-04
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 13/63 (20%)
Query: 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPP 294
PR+G +++++GGYS + + DP T W K+ P
Sbjct: 1 PRTGHSAVSVGGKIYVFGGYSN----------GSKASNKVLVYDPETGSWE---KLPPLP 47
Query: 295 GPR 297
PR
Sbjct: 48 TPR 50
|
Length = 50 |
| >gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 2e-04
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226
PR+GH V KI VFGG+ + + N + V+D + W+++ P
Sbjct: 1 PRTGHSAVSVGGKIYVFGGYSN---GSKASNKVLVYDPETGSWEKLPP 45
|
Length = 50 |
| >gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 44/221 (19%), Positives = 78/221 (35%), Gaps = 31/221 (14%)
Query: 95 NKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHH 154
+ YD + + W + P PR + N +Y+ GG + S +
Sbjct: 305 KNNLSVNSVVSYDTKTKSWNKV--PELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTV-- 360
Query: 155 YKDFWMLDLKTNQWEQL-NLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213
+ W ++W + L PR +V + I V GG + +
Sbjct: 361 --ESW--KPGESKWREEPPLI---FPRYNPCVVNVNNLIYVIGGISKNDELL---KTVEC 410
Query: 214 FDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSD 273
F L+ KW GS P G + ++++ GG S N I+
Sbjct: 411 FSLNTNKW-----SKGSPLPISHYGGCAIYHDGKIYVIGGISYI----DNIKVYNIVE-- 459
Query: 274 LWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
S +P T +W+++ + PR S+C+ + + GG
Sbjct: 460 --SYNPVTNKWTELSSLNF---PRINASLCIFNNKIYVVGG 495
|
Length = 534 |
| >gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 2e-04
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 124 PRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL 171
PRS V +Y+ GG Q + D +TN W +L
Sbjct: 1 PRSGAGVVVLGGKIYVIGG--YDGGQ----SLSSVEVYDPETNTWSKL 42
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46 |
| >gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 8e-04
Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 16/111 (14%)
Query: 209 NDLYVFDLDQF--KWQEIKPRFGSMWPS-PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265
Y DL + WQ+I +P PR+ +++++GG K S Q
Sbjct: 29 TSWYKLDLKKPSKGWQKIAD-----FPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQ- 82
Query: 266 EKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC-VHKKRALLFGGV 315
+ D++ DP+ W K+ P G S +H +A GGV
Sbjct: 83 ----VFDDVYRYDPKKNSWQKLDTR--SPVGLLGASGFSLHNGQAYFTGGV 127
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. Length = 346 |
| >gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.001
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 11/54 (20%)
Query: 235 PRSGFQ-FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287
PR+ + ++L+GG + E G + SD+W D T W+++
Sbjct: 1 PRAYHTSTSIGDGRLYLFGGEN----------EDGSVLSDVWVFDLSTNTWTRL 44
|
Length = 49 |
| >gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3 | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 12/48 (25%), Positives = 20/48 (41%)
Query: 517 DDDEDDSEDEGNGGSSSDETGDDDDDDEEDAEARDGDAGSLQMGDAVA 564
DD +D+ E+ D+ D D D++D E D + V+
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTSTIKEVS 270
|
This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554 |
| >gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.001
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 124 PRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG 175
PR H +V LY+ GG T D W+LD +TN W +L
Sbjct: 1 PRYPHASVVVGGKLYVVGG-STGLGDLSS---SDLWVLDPETNVWTELPALP 48
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 48 |
| >gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 26/205 (12%)
Query: 350 KEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLS 409
STK +L E K L K ++ K+E E E + ID +
Sbjct: 2 TTASTKAELAAEEEAKKKLKKLAAK-----SKSKGFITKEEIKEALESKKKTPEQIDQVL 56
Query: 410 ECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVY 469
+ V D + K ++ K+ K+ KD L
Sbjct: 57 IFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKA-------------PAKKKLKDELDSS 103
Query: 470 GGMMEINDQEITLDDLYSLNLSKLDEWKCIIPASESEWVEASEGEDEDDDEDDSEDEGNG 529
+ N + D Y ++ L++ + + ++ + +D+DDDEDD ED
Sbjct: 104 KKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDED---- 159
Query: 530 GSSSDETGDDDDDDEEDAEARDGDA 554
D+ D DD+DEE EA++ +
Sbjct: 160 ----DDDDDVDDEDEEKKEAKELEK 180
|
Length = 509 |
| >gnl|CDD|217927 pfam04147, Nop14, Nop14-like family | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 501 PASESEWVEASEGEDEDDDEDDSEDEGNGGSSSDETGDDDDDDEEDAEARD 551
+ E E +G D++D+EDD +D D + +++D+++ED++ D
Sbjct: 319 GEEDEEEEE--DGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDED 367
|
Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809 |
| >gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 18/117 (15%)
Query: 94 GNKTYVYG------DLYRYDVEKQE--WKVISSPNSP-PPRSAHQAVSWKNYLYIFGGEF 144
G+K YV G Y+ D++K W+ I + P PR+ A + LY+FGG
Sbjct: 17 GDKVYV-GLGSAGTSWYKLDLKKPSKGWQKI--ADFPGGPRNQAVAAAIDGKLYVFGGIG 73
Query: 145 TSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRS--GHRMV-LYKHKIIVFGGF 198
+ ++ + D + D K N W++L+ SP G L+ + GG
Sbjct: 74 KANSEGSPQVFDDVYRYDPKKNSWQKLD---TRSPVGLLGASGFSLHNGQAYFTGGV 127
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. Length = 346 |
| >gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif | Back alignment and domain information |
|---|
Score = 36.2 bits (84), Expect = 0.002
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226
PR H V+ K+ V GG +DL+V D + W E+
Sbjct: 1 PRYPHASVVVGGKLYVVGGSTGLGDLSS--SDLWVLDPETNVWTELPA 46
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 48 |
| >gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 11/56 (19%), Positives = 29/56 (51%)
Query: 509 EASEGEDEDDDEDDSEDEGNGGSSSDETGDDDDDDEEDAEARDGDAGSLQMGDAVA 564
A ++ED+D+ +++ + G + D ++ DA + + ++G ++ +A A
Sbjct: 218 SADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASA 273
|
This family consists of several bacterial cobalamin biosynthesis (CobT) proteins. CobT is involved in the transformation of precorrin-3 into cobyrinic acid. Length = 282 |
| >gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 14/110 (12%)
Query: 209 NDLYVFDLDQF--KWQEIKPRFGSMWPS-PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265
Y DL+ W +I +P PR +++++GG K S Q
Sbjct: 50 TSWYKLDLNAPSKGWTKIAA-----FPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQ- 103
Query: 266 EKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGV 315
+ D++ DP+T W K+ P G ++ +H +A + GGV
Sbjct: 104 ----VFDDVYKYDPKTNSWQKLDTRS-PVGLAGHVAVSLHNGKAYITGGV 148
|
Length = 376 |
| >gnl|CDD|217927 pfam04147, Nop14, Nop14-like family | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.004
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 476 NDQEITLDDLYSLNLSKLDEWKCIIPASESEWVEASEGEDEDDDEDDSEDEGNGGSSSDE 535
++ E DD + L + DE E + V+ + ED+DDD ++ E++ + ++
Sbjct: 304 DEFEPDDDDNFGLGQGEEDE------EEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEED 357
Query: 536 TGDDDDDDEEDAEARD 551
D+D DDE+D E +
Sbjct: 358 EEDEDSDDEDDEEEEE 373
|
Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 643 | |||
| KOG1230 | 521 | consensus Protein containing repeated kelch motifs | 100.0 | |
| PLN02153 | 341 | epithiospecifier protein | 100.0 | |
| PLN02193 | 470 | nitrile-specifier protein | 100.0 | |
| KOG1230 | 521 | consensus Protein containing repeated kelch motifs | 100.0 | |
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| PLN02193 | 470 | nitrile-specifier protein | 100.0 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 100.0 | |
| PLN02153 | 341 | epithiospecifier protein | 100.0 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 100.0 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 100.0 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 100.0 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 100.0 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 100.0 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 100.0 | |
| KOG4152 | 830 | consensus Host cell transcription factor HCFC1 [Ce | 100.0 | |
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0379 | 482 | consensus Kelch repeat-containing proteins [Genera | 100.0 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 100.0 | |
| KOG0379 | 482 | consensus Kelch repeat-containing proteins [Genera | 100.0 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 100.0 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 99.97 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 99.97 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 99.97 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 99.97 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 99.97 | |
| KOG4152 | 830 | consensus Host cell transcription factor HCFC1 [Ce | 99.97 | |
| KOG2437 | 723 | consensus Muskelin [Signal transduction mechanisms | 99.83 | |
| COG3055 | 381 | Uncharacterized protein conserved in bacteria [Fun | 99.77 | |
| PF13422 | 96 | DUF4110: Domain of unknown function (DUF4110) | 99.76 | |
| COG3055 | 381 | Uncharacterized protein conserved in bacteria [Fun | 99.64 | |
| KOG2437 | 723 | consensus Muskelin [Signal transduction mechanisms | 99.62 | |
| PF13964 | 50 | Kelch_6: Kelch motif | 98.98 | |
| PF13964 | 50 | Kelch_6: Kelch motif | 98.95 | |
| PF13415 | 49 | Kelch_3: Galactose oxidase, central domain | 98.82 | |
| PF13415 | 49 | Kelch_3: Galactose oxidase, central domain | 98.79 | |
| PF03089 | 337 | RAG2: Recombination activating protein 2; InterPro | 98.76 | |
| PF01344 | 47 | Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is | 98.71 | |
| PF07646 | 49 | Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is | 98.68 | |
| PLN02772 | 398 | guanylate kinase | 98.68 | |
| PLN02772 | 398 | guanylate kinase | 98.67 | |
| PF13854 | 42 | Kelch_5: Kelch motif | 98.66 | |
| PF13418 | 49 | Kelch_4: Galactose oxidase, central domain; PDB: 2 | 98.65 | |
| PF13418 | 49 | Kelch_4: Galactose oxidase, central domain; PDB: 2 | 98.6 | |
| PF01344 | 47 | Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is | 98.6 | |
| PF07646 | 49 | Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is | 98.55 | |
| PF13854 | 42 | Kelch_5: Kelch motif | 98.52 | |
| PF03089 | 337 | RAG2: Recombination activating protein 2; InterPro | 98.44 | |
| TIGR01640 | 230 | F_box_assoc_1 F-box protein interaction domain. Th | 98.24 | |
| smart00612 | 47 | Kelch Kelch domain. | 98.16 | |
| smart00612 | 47 | Kelch Kelch domain. | 98.15 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 97.87 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 97.64 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.46 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.46 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.42 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.02 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 96.85 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 96.85 | |
| TIGR01640 | 230 | F_box_assoc_1 F-box protein interaction domain. Th | 96.83 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 96.52 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 96.49 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 96.2 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 95.53 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 95.48 | |
| PF07893 | 342 | DUF1668: Protein of unknown function (DUF1668); In | 95.44 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 95.34 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 95.16 | |
| cd00094 | 194 | HX Hemopexin-like repeats.; Hemopexin is a heme-bi | 95.13 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 95.1 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 94.76 | |
| cd00094 | 194 | HX Hemopexin-like repeats.; Hemopexin is a heme-bi | 94.68 | |
| PF07893 | 342 | DUF1668: Protein of unknown function (DUF1668); In | 94.58 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 94.52 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 94.44 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 94.41 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 94.38 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 94.32 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 94.28 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 94.24 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 94.17 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 94.12 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 94.11 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 93.96 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 93.52 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 93.31 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 93.25 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 92.92 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 92.81 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 92.36 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 91.81 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 91.4 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 91.32 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 91.26 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 91.16 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 91.01 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 90.93 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 90.74 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 90.66 | |
| PF10446 | 458 | DUF2457: Protein of unknown function (DUF2457); In | 90.11 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 89.98 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 89.77 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 89.19 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 88.88 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 88.38 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 88.27 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 88.24 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 87.92 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 87.74 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 87.11 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 86.68 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 86.23 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 85.52 | |
| PTZ00421 | 493 | coronin; Provisional | 85.17 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 84.94 | |
| PF08268 | 129 | FBA_3: F-box associated domain; InterPro: IPR01318 | 84.5 | |
| PF09910 | 339 | DUF2139: Uncharacterized protein conserved in arch | 84.33 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 84.21 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 84.1 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 84.0 | |
| PF06524 | 314 | NOA36: NOA36 protein; InterPro: IPR010531 This fam | 83.6 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 83.51 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 83.17 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 82.7 | |
| PF08268 | 129 | FBA_3: F-box associated domain; InterPro: IPR01318 | 82.0 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 81.69 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 81.47 | |
| PTZ00421 | 493 | coronin; Provisional | 81.32 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 81.04 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 80.21 |
| >KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-81 Score=636.18 Aligned_cols=477 Identities=45% Similarity=0.747 Sum_probs=381.9
Q ss_pred CCCCCCCCCCCc--chhHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHhhHhhhceeeEEeeccCCCCCCCCceEEEEec
Q 006473 1 MGKKNKKAGKGK--EKTERKTAKAEEKRARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSLNINP 78 (643)
Q Consensus 1 m~k~~k~~~~~~--~k~~~k~~k~~~k~~~~~~~~~~~~edi~~~l~~~~~~~~~~~~~~~~~~~~~P~~R~~~s~~~~~ 78 (643)
||||.||.+++| +|+++|+.|+..|++ +++.++.|+..|...++..+++....+....+++|+||.++++++.|
T Consensus 1 MgKK~Kk~kkgk~aek~a~K~dkK~akr~----kkl~~e~de~~i~~~iq~~eaK~~e~~~e~~~~~PspRsn~sl~~nP 76 (521)
T KOG1230|consen 1 MGKKNKKDKKGKGAEKTAAKQDKKFAKRK----KKLNEELDEADIAEIIQSLEAKQIEHVVETSVPPPSPRSNPSLFANP 76 (521)
T ss_pred CCccccCcccccchhhhHHHHHHHHHhhh----hhcCcccchHHHHHHHHhhhhhccceeeeccCCCCCCCCCcceeecc
Confidence 999977654444 444444444444333 56677777777777888888887677777889999999999999999
Q ss_pred cCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEEC-CEEEEEeCccCCCCCCcceecCe
Q 006473 79 LKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK-NYLYIFGGEFTSPNQERFHHYKD 157 (643)
Q Consensus 79 ~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~-~~iyvfGG~~~~~~~~~~~~~~d 157 (643)
.+ +.|+||||++++|+.+.+||+||+||+.+++|+++.+++.|+||++|++|++. |.+|||||++.++++.+|+||.|
T Consensus 77 ek-eELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD 155 (521)
T KOG1230|consen 77 EK-EELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKD 155 (521)
T ss_pred Cc-ceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhh
Confidence 86 59999999999999999999999999999999999999999999999999994 89999999999999999999999
Q ss_pred EEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCcc
Q 006473 158 FWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237 (643)
Q Consensus 158 v~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~ 237 (643)
+|.||+.+++|+++...+.|+||+||+|++++++|+|||||+++.+...|+||||+||+.+++|+.+.+. +..|.||+
T Consensus 156 ~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Kleps--ga~PtpRS 233 (521)
T KOG1230|consen 156 LWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPS--GAGPTPRS 233 (521)
T ss_pred eeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCC--CCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999984 45899999
Q ss_pred ceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCC-----CeeEEeccCCCCCCCceeeEEEEE-CCeEE
Q 006473 238 GFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT-----WEWSKVKKIGMPPGPRAGFSMCVH-KKRAL 310 (643)
Q Consensus 238 ~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t-----~~W~~l~~~g~~P~~R~g~s~~~~-~~~iy 310 (643)
||++.+. ++.|||+|||+.. ..+....+|..|+|+|.|++.. +.|+++.+.|..|.||+|++++++ +++.|
T Consensus 234 Gcq~~vtpqg~i~vyGGYsK~--~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal 311 (521)
T KOG1230|consen 234 GCQFSVTPQGGIVVYGGYSKQ--RVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKAL 311 (521)
T ss_pred cceEEecCCCcEEEEcchhHh--hhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceE
Confidence 9999999 9999999999987 5777888999999999999988 899999999999999999999999 46999
Q ss_pred EeccccccccCccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccc
Q 006473 311 LFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDE 390 (643)
Q Consensus 311 vfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (643)
+|||+.+.+..++.+.+.|+||||.||+.+++|+...+.+.++.... +|..++ +..+.+.++..+.... |-
T Consensus 312 ~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq~~~S~~~~--~r~~~K----d~~k~~~~~~~G~~tk---d~ 382 (521)
T KOG1230|consen 312 FFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQLQGKKSPATS--RRRSRK----DQEKELQRPTVGPNTK---DL 382 (521)
T ss_pred EecceecccccchhhhhhhhhhhhheecccchhhHhhhccCCCCccc--cccccc----cccccccCcccCCCcc---cc
Confidence 99999999999999999999999999999999999988766544332 111111 2222222222221110 00
Q ss_pred hhhhhhhhhhcccccccccccCCcceeecCceee-e--ecCCCCCCc-cccccccccCCCCCcCCccccccceeeecCeE
Q 006473 391 NAEYYEEADEMESNIDNLSECVPNSVIVDDGVLA-A--KSGGKPYES-KKKSDMQKSLLPEIVKPCGRINSCMVVGKDTL 466 (643)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~-~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~L 466 (643)
+ -+.. -+....+-++++. + ...+....+ ++............--|.||.++.++|..++|
T Consensus 383 e-----------~~~v-----~k~v~~~~d~l~i~v~v~~~g~~~~p~s~~e~s~~~~~e~~~~~~pr~d~~~~v~~G~~ 446 (521)
T KOG1230|consen 383 E-----------VQAV-----DKAVCPTTDSLFIYVGVWEPGEADYPESEDEASREGDREPDEGEFPRMDDELSVKVGVL 446 (521)
T ss_pred c-----------ceec-----ceeeeecCCceEEEeecCCCCCCCCcccccccccccCCCCCCCCCccCCCccCcccceE
Confidence 0 0000 0001111122221 0 111111111 11111112222222259999999999999999
Q ss_pred EEecceEeecCeEEeecceeccccCCccceEEeccCCch--hhcccc
Q 006473 467 YVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIPASES--EWVEAS 511 (643)
Q Consensus 467 yi~GG~~e~g~~e~tl~D~~~ldl~k~d~w~~i~~~~~~--~w~~~~ 511 (643)
||+||+++.+|+..||.|||+|||.++..|+.|.+.+.. +|.+..
T Consensus 447 ~i~gGi~ee~d~q~tl~dfyal~~hr~~~~K~L~~~sfe~~E~re~~ 493 (521)
T KOG1230|consen 447 YIGGGIFEERDWQPTLRDFYALDLHRNEKGKQLKTKSFELCEWRERR 493 (521)
T ss_pred EecCCCcccccccchHHHHhhhhhhhhhhhhhhccCCchhhhhhhhh
Confidence 999999999999999999999999998899999999764 798543
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=370.75 Aligned_cols=280 Identities=23% Similarity=0.413 Sum_probs=217.1
Q ss_pred hceeeEEeeccCCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCC-CCCC-ceeeE
Q 006473 52 AKKKEVHVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN-SPPP-RSAHQ 129 (643)
Q Consensus 52 ~~~~~~~~~~~~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~-~P~p-Rs~ha 129 (643)
..|.++.. ....+|.||.+|+++++ +++||||||.... .....+++|+||+.+++|..++++. .|.+ +.+|+
T Consensus 7 ~~W~~~~~-~~~~~P~pR~~h~~~~~---~~~iyv~GG~~~~--~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~ 80 (341)
T PLN02153 7 GGWIKVEQ-KGGKGPGPRCSHGIAVV---GDKLYSFGGELKP--NEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVR 80 (341)
T ss_pred CeEEEecC-CCCCCCCCCCcceEEEE---CCEEEEECCccCC--CCceeCcEEEEECCCCEEEEcCccCCCCCCccCceE
Confidence 34554443 23347899999999999 8999999996322 2235689999999999999987653 3332 45899
Q ss_pred EEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccC---CCCCCCceeEEEEECCEEEEEeeeecCCC--c
Q 006473 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK---GCPSPRSGHRMVLYKHKIIVFGGFYDTLR--E 204 (643)
Q Consensus 130 ~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~---g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~--~ 204 (643)
+++++++||||||..... .++++++||+.+++|+.++.. ..|.+|.+|++++++++||||||+..... .
T Consensus 81 ~~~~~~~iyv~GG~~~~~------~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~ 154 (341)
T PLN02153 81 MVAVGTKLYIFGGRDEKR------EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKT 154 (341)
T ss_pred EEEECCEEEEECCCCCCC------ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCC
Confidence 999999999999975432 468999999999999998752 12889999999999999999999864321 1
Q ss_pred eeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCee
Q 006473 205 VRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284 (643)
Q Consensus 205 ~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W 284 (643)
...++++++||+.+++|+.++.+ ...|.+|.+|++++++++|||+||..... ..+ .......+++++||+.+++|
T Consensus 155 ~~~~~~v~~yd~~~~~W~~l~~~--~~~~~~r~~~~~~~~~~~iyv~GG~~~~~--~~g-G~~~~~~~~v~~yd~~~~~W 229 (341)
T PLN02153 155 PERFRTIEAYNIADGKWVQLPDP--GENFEKRGGAGFAVVQGKIWVVYGFATSI--LPG-GKSDYESNAVQFFDPASGKW 229 (341)
T ss_pred CcccceEEEEECCCCeEeeCCCC--CCCCCCCCcceEEEECCeEEEEecccccc--ccC-CccceecCceEEEEcCCCcE
Confidence 22468999999999999998876 33468999999999999999999976320 000 00112367899999999999
Q ss_pred EEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 285 SKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 285 ~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
+++...+..|.+|.+|++++++++||||||.......++.......|+||+||+.+++|+.+..
T Consensus 230 ~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 230 TEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGE 293 (341)
T ss_pred EeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccC
Confidence 9998877789999999999999999999997543222222234567899999999999998865
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=381.25 Aligned_cols=259 Identities=25% Similarity=0.447 Sum_probs=214.4
Q ss_pred ccCCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCC-CCCC-CceeeEEEEECCEEE
Q 006473 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSP-NSPP-PRSAHQAVSWKNYLY 138 (643)
Q Consensus 61 ~~~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~-~~P~-pRs~ha~~~~~~~iy 138 (643)
....+|.||.+|+++++ ++.||||||..... ....+++|+||+.+++|..++.. ..|. +|.+|++++++++||
T Consensus 158 ~~~~~P~pR~~h~~~~~---~~~iyv~GG~~~~~--~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lY 232 (470)
T PLN02193 158 QKGEGPGLRCSHGIAQV---GNKIYSFGGEFTPN--QPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLY 232 (470)
T ss_pred cCCCCCCCccccEEEEE---CCEEEEECCcCCCC--CCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEE
Confidence 33457899999999999 89999999963222 22568999999999999987654 2344 367999999999999
Q ss_pred EEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCC-CCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcC
Q 006473 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (643)
Q Consensus 139 vfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g-~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~ 217 (643)
||||.... ..++++|+||+.+++|+.+.+.+ .|.+|++|++++++++||||||+.... +++++++||+.
T Consensus 233 vfGG~~~~------~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~----~~~~~~~yd~~ 302 (470)
T PLN02193 233 VFGGRDAS------RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATA----RLKTLDSYNIV 302 (470)
T ss_pred EECCCCCC------CCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCC----CcceEEEEECC
Confidence 99997643 24799999999999999997732 289999999999999999999986532 47899999999
Q ss_pred CCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCc
Q 006473 218 QFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPR 297 (643)
Q Consensus 218 t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R 297 (643)
+++|+.++.. ...|.+|.+|++++++++|||+||+.+. .++++++||+.+++|+++..++.+|.+|
T Consensus 303 t~~W~~~~~~--~~~~~~R~~~~~~~~~gkiyviGG~~g~------------~~~dv~~yD~~t~~W~~~~~~g~~P~~R 368 (470)
T PLN02193 303 DKKWFHCSTP--GDSFSIRGGAGLEVVQGKVWVVYGFNGC------------EVDDVHYYDPVQDKWTQVETFGVRPSER 368 (470)
T ss_pred CCEEEeCCCC--CCCCCCCCCcEEEEECCcEEEEECCCCC------------ccCceEEEECCCCEEEEeccCCCCCCCc
Confidence 9999998764 3357899999999999999999998643 3688999999999999999888889999
Q ss_pred eeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 298 AGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 298 ~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
.+|++++++++||||||....+.........+.|++|+||+.+++|+.+..
T Consensus 369 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~ 419 (470)
T PLN02193 369 SVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDK 419 (470)
T ss_pred ceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEccc
Confidence 999999999999999998653322222224567899999999999998875
|
|
| >KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=345.90 Aligned_cols=272 Identities=28% Similarity=0.582 Sum_probs=230.2
Q ss_pred CCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEEC-CEEEEE
Q 006473 119 PNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYK-HKIIVF 195 (643)
Q Consensus 119 ~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~-~~lyvf 195 (643)
-..|.||++.++++. .+-|+||||++..... .+.|||+|.||+.+++|..+..+..|+||++|.++++. |.||||
T Consensus 61 ~~~PspRsn~sl~~nPekeELilfGGEf~ngqk--T~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~f 138 (521)
T KOG1230|consen 61 VPPPSPRSNPSLFANPEKEELILFGGEFYNGQK--THVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLF 138 (521)
T ss_pred CCCCCCCCCcceeeccCcceeEEecceeeccee--EEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEe
Confidence 345889999999987 5689999999876443 67899999999999999999887779999999999995 899999
Q ss_pred eeeecCCCcee--eeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeee
Q 006473 196 GGFYDTLREVR--YYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSD 273 (643)
Q Consensus 196 GG~~~~~~~~~--~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d 273 (643)
||-.....+.. .+.|+|.||+.+++|.++.... .|+||+||-|+++..+|+||||+... +....++||
T Consensus 139 GGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g---~PS~RSGHRMvawK~~lilFGGFhd~-------nr~y~YyND 208 (521)
T KOG1230|consen 139 GGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG---GPSPRSGHRMVAWKRQLILFGGFHDS-------NRDYIYYND 208 (521)
T ss_pred ccccCCcchhhhhhhhheeeeeeccchheeeccCC---CCCCCccceeEEeeeeEEEEcceecC-------CCceEEeee
Confidence 99765544433 4789999999999999998874 49999999999999999999998764 345678999
Q ss_pred EEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCC-----CcEEEeE
Q 006473 274 LWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN-----HRWYPLE 347 (643)
Q Consensus 274 v~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t-----~~W~~l~ 347 (643)
+|+||+.+.+|+++.+.|..|.||+||++++. .+.|||+||++......+...+...+|+|.++++. ..|.++.
T Consensus 209 vy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvk 288 (521)
T KOG1230|consen 209 VYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVK 288 (521)
T ss_pred eEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeecc
Confidence 99999999999999999889999999999999 99999999998776666667788999999999998 5676666
Q ss_pred ecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeecCceeeeec
Q 006473 348 LRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKS 427 (643)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (643)
..+
T Consensus 289 p~g----------------------------------------------------------------------------- 291 (521)
T KOG1230|consen 289 PSG----------------------------------------------------------------------------- 291 (521)
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 522
Q ss_pred CCCCCCccccccccccCCCCCcCCccccccceeeecC-eEEEecceEeec-CeE----EeecceeccccCCccceEEecc
Q 006473 428 GGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKD-TLYVYGGMMEIN-DQE----ITLDDLYSLNLSKLDEWKCIIP 501 (643)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~-~Lyi~GG~~e~g-~~e----~tl~D~~~ldl~k~d~w~~i~~ 501 (643)
+.|.||.+.+.+|..| .-|.|||++..- ..| .-+||||.|||.. ++|....-
T Consensus 292 ---------------------~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~-nrW~~~ql 349 (521)
T KOG1230|consen 292 ---------------------VKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTR-NRWSEGQL 349 (521)
T ss_pred ---------------------CCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheeccc-chhhHhhh
Confidence 2599999999988766 899999987421 111 3499999999988 99977643
|
|
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=316.29 Aligned_cols=263 Identities=22% Similarity=0.441 Sum_probs=222.6
Q ss_pred CCCCceEEEEeccCCCEEEEEcceecCCC-CceeeccEEEEECCCCcEEEecCC-----------CCCCCceeeEEEEEC
Q 006473 67 SPRSNCSLNINPLKETELILYGGEFYNGN-KTYVYGDLYRYDVEKQEWKVISSP-----------NSPPPRSAHQAVSWK 134 (643)
Q Consensus 67 ~~R~~~s~~~~~~~~~~lyvfGG~~~~g~-~~~~~ndv~~yd~~~~~W~~l~s~-----------~~P~pRs~ha~~~~~ 134 (643)
+.|.+|+++.+ +..||-|||...... ...---||+++|..+-.|.++++. -.|-.|++|+++.+.
T Consensus 12 PrRVNHAavaV---G~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~ 88 (392)
T KOG4693|consen 12 PRRVNHAAVAV---GSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQ 88 (392)
T ss_pred cccccceeeee---cceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEc
Confidence 46899999999 899999999631111 011123799999999999988752 246679999999999
Q ss_pred CEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCC-CCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEE
Q 006473 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213 (643)
Q Consensus 135 ~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~-P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~ 213 (643)
+++||.||.+.... ..|-++.||++++.|.+....|. |.+|-||++|++++.+|||||+.... .++.++++.
T Consensus 89 d~~yvWGGRND~eg-----aCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a--~~FS~d~h~ 161 (392)
T KOG4693|consen 89 DKAYVWGGRNDDEG-----ACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDA--QRFSQDTHV 161 (392)
T ss_pred ceEEEEcCccCccc-----ccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHH--Hhhhcccee
Confidence 99999999987654 36899999999999999888774 99999999999999999999997654 458999999
Q ss_pred EEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCC
Q 006473 214 FDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMP 293 (643)
Q Consensus 214 yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~ 293 (643)
+|+.+.+|+.+... +.+|.-|-.|+++++++.+|||||.... ............+.+-.||+.|..|.+-...+..
T Consensus 162 ld~~TmtWr~~~Tk--g~PprwRDFH~a~~~~~~MYiFGGR~D~--~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~ 237 (392)
T KOG4693|consen 162 LDFATMTWREMHTK--GDPPRWRDFHTASVIDGMMYIFGGRSDE--SGPFHSIHEQYCDTIMALDLATGAWTRTPENTMK 237 (392)
T ss_pred Eeccceeeeehhcc--CCCchhhhhhhhhhccceEEEecccccc--CCCccchhhhhcceeEEEeccccccccCCCCCcC
Confidence 99999999999887 6678899999999999999999999876 2333344455677888999999999999888889
Q ss_pred CCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEecC
Q 006473 294 PGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRK 350 (643)
Q Consensus 294 P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~ 350 (643)
|..|..|++.+.++.||||||+++. -..-+|+||+||+.+..|..+..++
T Consensus 238 P~GRRSHS~fvYng~~Y~FGGYng~-------ln~HfndLy~FdP~t~~W~~I~~~G 287 (392)
T KOG4693|consen 238 PGGRRSHSTFVYNGKMYMFGGYNGT-------LNVHFNDLYCFDPKTSMWSVISVRG 287 (392)
T ss_pred CCcccccceEEEcceEEEecccchh-------hhhhhcceeecccccchheeeeccC
Confidence 9999999999999999999999763 2456899999999999999999843
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=347.91 Aligned_cols=299 Identities=22% Similarity=0.381 Sum_probs=238.5
Q ss_pred CCCCC-CceEEEEeccCCCEEEEEcceecCCCCceeeccE--EEEECCC----CcEEEecCC-CCCCCceeeEEEEECCE
Q 006473 65 APSPR-SNCSLNINPLKETELILYGGEFYNGNKTYVYGDL--YRYDVEK----QEWKVISSP-NSPPPRSAHQAVSWKNY 136 (643)
Q Consensus 65 ~P~~R-~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv--~~yd~~~----~~W~~l~s~-~~P~pRs~ha~~~~~~~ 136 (643)
+|... .+..+++. +++|+.|+|.. +. .++.+ |.+++.+ ++|..++++ ..|.||++|+++++++.
T Consensus 106 ~~~g~~~g~~f~~~---~~~ivgf~G~~--~~---~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~ 177 (470)
T PLN02193 106 HPIEKRPGVKFVLQ---GGKIVGFHGRS--TD---VLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNK 177 (470)
T ss_pred cccccCCCCEEEEc---CCeEEEEeccC--CC---cEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCE
Confidence 44433 34445443 79999999952 22 34444 4446544 799998764 35889999999999999
Q ss_pred EEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCC-CCC-CCceeEEEEECCEEEEEeeeecCCCceeeeccEEEE
Q 006473 137 LYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPS-PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214 (643)
Q Consensus 137 iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g-~P~-~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~y 214 (643)
||||||...... ...+++|+||+.+++|+.++..+ .|. +|.+|++++++++||||||+... ..++++|+|
T Consensus 178 iyv~GG~~~~~~----~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~----~~~ndv~~y 249 (470)
T PLN02193 178 IYSFGGEFTPNQ----PIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDAS----RQYNGFYSF 249 (470)
T ss_pred EEEECCcCCCCC----CeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCC----CCCccEEEE
Confidence 999999854321 14578999999999999887643 344 36799999999999999998643 358999999
Q ss_pred EcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCC
Q 006473 215 DLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPP 294 (643)
Q Consensus 215 D~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 294 (643)
|+.+++|+.+.++. ..|.+|++|++++++++|||+||+... ..++++++||+.+++|+.+...+.+|
T Consensus 250 D~~t~~W~~l~~~~--~~P~~R~~h~~~~~~~~iYv~GG~~~~-----------~~~~~~~~yd~~t~~W~~~~~~~~~~ 316 (470)
T PLN02193 250 DTTTNEWKLLTPVE--EGPTPRSFHSMAADEENVYVFGGVSAT-----------ARLKTLDSYNIVDKKWFHCSTPGDSF 316 (470)
T ss_pred ECCCCEEEEcCcCC--CCCCCccceEEEEECCEEEEECCCCCC-----------CCcceEEEEECCCCEEEeCCCCCCCC
Confidence 99999999998763 348899999999999999999998764 45678999999999999998766678
Q ss_pred CCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhc
Q 006473 295 GPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEK 374 (643)
Q Consensus 295 ~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (643)
.+|.+|++++++++|||+||... ..+++|++||+.+++|..+...+
T Consensus 317 ~~R~~~~~~~~~gkiyviGG~~g----------~~~~dv~~yD~~t~~W~~~~~~g------------------------ 362 (470)
T PLN02193 317 SIRGGAGLEVVQGKVWVVYGFNG----------CEVDDVHYYDPVQDKWTQVETFG------------------------ 362 (470)
T ss_pred CCCCCcEEEEECCcEEEEECCCC----------CccCceEEEECCCCEEEEeccCC------------------------
Confidence 89999999999999999999753 23689999999999999887521
Q ss_pred cCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeecCceeeeecCCCCCCccccccccccCCCCCcCCccc
Q 006473 375 LNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGR 454 (643)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R 454 (643)
..|.||
T Consensus 363 --------------------------------------------------------------------------~~P~~R 368 (470)
T PLN02193 363 --------------------------------------------------------------------------VRPSER 368 (470)
T ss_pred --------------------------------------------------------------------------CCCCCc
Confidence 048999
Q ss_pred cccceeeecCeEEEecceEeecC-----eEEeecceeccccCCccceEEecc
Q 006473 455 INSCMVVGKDTLYVYGGMMEIND-----QEITLDDLYSLNLSKLDEWKCIIP 501 (643)
Q Consensus 455 ~~~~~~v~~~~Lyi~GG~~e~g~-----~e~tl~D~~~ldl~k~d~w~~i~~ 501 (643)
..|+++++++.||||||...... ....++|+|.||+.+ +.|+.+..
T Consensus 369 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t-~~W~~~~~ 419 (470)
T PLN02193 369 SVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTET-LQWERLDK 419 (470)
T ss_pred ceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCc-CEEEEccc
Confidence 99999999999999999753110 113478999999999 99998864
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=352.94 Aligned_cols=284 Identities=21% Similarity=0.365 Sum_probs=247.6
Q ss_pred CCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCcc
Q 006473 65 APSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEF 144 (643)
Q Consensus 65 ~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~ 144 (643)
.+.+|..... .. .+.||++||... .....+.+.+||+.+++|..++.+ |.+|..++++++++.||++||.+
T Consensus 272 ~~~~~t~~r~-~~---~~~l~~vGG~~~---~~~~~~~ve~yd~~~~~w~~~a~m--~~~r~~~~~~~~~~~lYv~GG~~ 342 (571)
T KOG4441|consen 272 MQSPRTRPRR-SV---SGKLVAVGGYNR---QGQSLRSVECYDPKTNEWSSLAPM--PSPRCRVGVAVLNGKLYVVGGYD 342 (571)
T ss_pred ccCCCcccCc-CC---CCeEEEECCCCC---CCcccceeEEecCCcCcEeecCCC--CcccccccEEEECCEEEEEcccc
Confidence 4555554433 22 588999999632 233678999999999999999885 58999999999999999999998
Q ss_pred CCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEe
Q 006473 145 TSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (643)
Q Consensus 145 ~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (643)
+. ...++.+|+||+.+++|+.+++ |+.+|.+|+++++++.||++||+++ ..+++.+++||+.+++|+.+
T Consensus 343 ~~-----~~~l~~ve~YD~~~~~W~~~a~--M~~~R~~~~v~~l~g~iYavGG~dg----~~~l~svE~YDp~~~~W~~v 411 (571)
T KOG4441|consen 343 SG-----SDRLSSVERYDPRTNQWTPVAP--MNTKRSDFGVAVLDGKLYAVGGFDG----EKSLNSVECYDPVTNKWTPV 411 (571)
T ss_pred CC-----CcccceEEEecCCCCceeccCC--ccCccccceeEEECCEEEEEecccc----ccccccEEEecCCCCccccc
Confidence 51 2368999999999999999888 9999999999999999999999985 34699999999999999999
Q ss_pred ccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEE
Q 006473 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV 304 (643)
Q Consensus 225 ~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~ 304 (643)
+++ +.+|++|+++++++.||++||+++. ...++.+.+|||.+++|+.+++| +.+|.++++++
T Consensus 412 a~m-----~~~r~~~gv~~~~g~iYi~GG~~~~----------~~~l~sve~YDP~t~~W~~~~~M---~~~R~~~g~a~ 473 (571)
T KOG4441|consen 412 APM-----LTRRSGHGVAVLGGKLYIIGGGDGS----------SNCLNSVECYDPETNTWTLIAPM---NTRRSGFGVAV 473 (571)
T ss_pred CCC-----CcceeeeEEEEECCEEEEEcCcCCC----------ccccceEEEEcCCCCceeecCCc---ccccccceEEE
Confidence 999 7799999999999999999999887 23889999999999999999987 77999999999
Q ss_pred ECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcc
Q 006473 305 HKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFD 384 (643)
Q Consensus 305 ~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (643)
++++||++||.++ ......+++||+.+++|..+..
T Consensus 474 ~~~~iYvvGG~~~---------~~~~~~VE~ydp~~~~W~~v~~------------------------------------ 508 (571)
T KOG4441|consen 474 LNGKIYVVGGFDG---------TSALSSVERYDPETNQWTMVAP------------------------------------ 508 (571)
T ss_pred ECCEEEEECCccC---------CCccceEEEEcCCCCceeEccc------------------------------------
Confidence 9999999999986 2235669999999999999976
Q ss_pred cCcccchhhhhhhhhhcccccccccccCCcceeecCceeeeecCCCCCCccccccccccCCCCCcCCccccccceeeecC
Q 006473 385 ANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKD 464 (643)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~ 464 (643)
|+.+|.++++++.++
T Consensus 509 -----------------------------------------------------------------m~~~rs~~g~~~~~~ 523 (571)
T KOG4441|consen 509 -----------------------------------------------------------------MTSPRSAVGVVVLGG 523 (571)
T ss_pred -----------------------------------------------------------------CccccccccEEEECC
Confidence 799999999999999
Q ss_pred eEEEecceEeecCeEEeecceeccccCCccceEEecc
Q 006473 465 TLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIP 501 (643)
Q Consensus 465 ~Lyi~GG~~e~g~~e~tl~D~~~ldl~k~d~w~~i~~ 501 (643)
.||+.||.. ..-.|+.+-.||..+ |.|+.+.+
T Consensus 524 ~ly~vGG~~----~~~~l~~ve~ydp~~-d~W~~~~~ 555 (571)
T KOG4441|consen 524 KLYAVGGFD----GNNNLNTVECYDPET-DTWTEVTE 555 (571)
T ss_pred EEEEEeccc----CccccceeEEcCCCC-CceeeCCC
Confidence 999999953 233588888889998 99999987
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-37 Score=326.12 Aligned_cols=281 Identities=21% Similarity=0.340 Sum_probs=219.6
Q ss_pred CCCCcEEEecCCC--CCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCC-CCC-CCcee
Q 006473 108 VEKQEWKVISSPN--SPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPS-PRSGH 183 (643)
Q Consensus 108 ~~~~~W~~l~s~~--~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g-~P~-~Rs~h 183 (643)
+....|..+.... .|.||.+|+++++++.||||||...... ...+++|+||+.+++|+.+++.+ .|. .+.+|
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~----~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~ 79 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNE----HIDKDLYVFDFNTHTWSIAPANGDVPRISCLGV 79 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCC----ceeCcEEEEECCCCEEEEcCccCCCCCCccCce
Confidence 3567899997642 5889999999999999999999854321 24589999999999999987643 233 23489
Q ss_pred EEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccC
Q 006473 184 RMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKN 263 (643)
Q Consensus 184 ~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~ 263 (643)
++++++++||||||+.... .++++++||+.+++|+.++.++....|.+|.+|++++++++|||+||+....
T Consensus 80 ~~~~~~~~iyv~GG~~~~~----~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~----- 150 (341)
T PLN02153 80 RMVAVGTKLYIFGGRDEKR----EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGG----- 150 (341)
T ss_pred EEEEECCEEEEECCCCCCC----ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCC-----
Confidence 9999999999999986432 4789999999999999998764334488999999999999999999986430
Q ss_pred CCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcE
Q 006473 264 QSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (643)
Q Consensus 264 ~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (643)
.......++++++||+.+++|+.++.++.+|.+|.+|++++++++|||+||.......+. ......++|++||+.+++|
T Consensus 151 ~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG-~~~~~~~~v~~yd~~~~~W 229 (341)
T PLN02153 151 LMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGG-KSDYESNAVQFFDPASGKW 229 (341)
T ss_pred ccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCC-ccceecCceEEEEcCCCcE
Confidence 000112467899999999999999987777789999999999999999999753211000 0012368899999999999
Q ss_pred EEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeecCcee
Q 006473 344 YPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVL 423 (643)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (643)
..+...+
T Consensus 230 ~~~~~~g------------------------------------------------------------------------- 236 (341)
T PLN02153 230 TEVETTG------------------------------------------------------------------------- 236 (341)
T ss_pred EeccccC-------------------------------------------------------------------------
Confidence 9987521
Q ss_pred eeecCCCCCCccccccccccCCCCCcCCccccccceeeecCeEEEecceEeec-----CeEEeecceeccccCCccceEE
Q 006473 424 AAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEIN-----DQEITLDDLYSLNLSKLDEWKC 498 (643)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g-----~~e~tl~D~~~ldl~k~d~w~~ 498 (643)
-+|.+|..++++++++.||||||..... .....++|+|.||+.+ +.|+.
T Consensus 237 -------------------------~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~-~~W~~ 290 (341)
T PLN02153 237 -------------------------AKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTET-LVWEK 290 (341)
T ss_pred -------------------------CCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCc-cEEEe
Confidence 0599999999999999999999974210 1223478999999998 99999
Q ss_pred ecc
Q 006473 499 IIP 501 (643)
Q Consensus 499 i~~ 501 (643)
+..
T Consensus 291 ~~~ 293 (341)
T PLN02153 291 LGE 293 (341)
T ss_pred ccC
Confidence 864
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=322.23 Aligned_cols=249 Identities=19% Similarity=0.288 Sum_probs=191.8
Q ss_pred CCCCceEEEEeccCCCEEEEEcceecCC------CCceeeccEEEEECCC--CcEEEecCCCCCCCceeeEEEEECCEEE
Q 006473 67 SPRSNCSLNINPLKETELILYGGEFYNG------NKTYVYGDLYRYDVEK--QEWKVISSPNSPPPRSAHQAVSWKNYLY 138 (643)
Q Consensus 67 ~~R~~~s~~~~~~~~~~lyvfGG~~~~g------~~~~~~ndv~~yd~~~--~~W~~l~s~~~P~pRs~ha~~~~~~~iy 138 (643)
..++++.++++ ++.|||+||..+.. .....++++|+|+... .+|..+++ +|.+|..|+++++++.||
T Consensus 2 ~~~~g~~~~~~---~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~--lp~~r~~~~~~~~~~~ly 76 (323)
T TIGR03548 2 LGVAGCYAGII---GDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQ--LPYEAAYGASVSVENGIY 76 (323)
T ss_pred CceeeEeeeEE---CCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEccc--CCccccceEEEEECCEEE
Confidence 45678888888 89999999986542 2346789999996332 37998875 468898888899999999
Q ss_pred EEeCccCCCCCCcceecCeEEEEECCCCcE----EEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEE
Q 006473 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQW----EQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214 (643)
Q Consensus 139 vfGG~~~~~~~~~~~~~~dv~~yD~~t~~W----~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~y 214 (643)
++||..... .++++|+||+.++.| ..+++ +|.+|.+|++++++++|||+||.... ..++++++|
T Consensus 77 viGG~~~~~------~~~~v~~~d~~~~~w~~~~~~~~~--lp~~~~~~~~~~~~~~iYv~GG~~~~----~~~~~v~~y 144 (323)
T TIGR03548 77 YIGGSNSSE------RFSSVYRITLDESKEELICETIGN--LPFTFENGSACYKDGTLYVGGGNRNG----KPSNKSYLF 144 (323)
T ss_pred EEcCCCCCC------CceeEEEEEEcCCceeeeeeEcCC--CCcCccCceEEEECCEEEEEeCcCCC----ccCceEEEE
Confidence 999975432 468999999999998 55554 79999999999999999999997532 247899999
Q ss_pred EcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCC--
Q 006473 215 DLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGM-- 292 (643)
Q Consensus 215 D~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~-- 292 (643)
|+.+++|+.+++++ ..+|..|++++++++|||+||.... ...++++||+.+++|+.+..+..
T Consensus 145 d~~~~~W~~~~~~p----~~~r~~~~~~~~~~~iYv~GG~~~~------------~~~~~~~yd~~~~~W~~~~~~~~~~ 208 (323)
T TIGR03548 145 NLETQEWFELPDFP----GEPRVQPVCVKLQNELYVFGGGSNI------------AYTDGYKYSPKKNQWQKVADPTTDS 208 (323)
T ss_pred cCCCCCeeECCCCC----CCCCCcceEEEECCEEEEEcCCCCc------------cccceEEEecCCCeeEECCCCCCCC
Confidence 99999999998762 2479999999999999999998643 24578999999999999987632
Q ss_pred CCCCceeeE-EEEECCeEEEeccccccccCcc-----------------------ccccccCCcEEEEECCCCcEEEeEe
Q 006473 293 PPGPRAGFS-MCVHKKRALLFGGVVDMEMKGD-----------------------VIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 293 ~P~~R~g~s-~~~~~~~iyvfGG~~~~~~~~~-----------------------~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
.|..+.+++ +++.+++||||||.+....... .-...|.+.+++||+.+++|+.++.
T Consensus 209 ~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 288 (323)
T TIGR03548 209 EPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGN 288 (323)
T ss_pred CceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccc
Confidence 244444444 4455799999999864210000 0001245789999999999998875
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=323.61 Aligned_cols=257 Identities=19% Similarity=0.296 Sum_probs=190.7
Q ss_pred CCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEEC--CCCcEEEecCCCCC-CCceeeEEEEECCEEEE
Q 006473 63 VPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDV--EKQEWKVISSPNSP-PPRSAHQAVSWKNYLYI 139 (643)
Q Consensus 63 ~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~--~~~~W~~l~s~~~P-~pRs~ha~~~~~~~iyv 139 (643)
+++|.+|.+++++++ +++|||+||. . .+.+|+||+ .+++|..++++ | .+|.+|++++++++|||
T Consensus 2 ~~lp~~~~~~~~~~~---~~~vyv~GG~--~------~~~~~~~d~~~~~~~W~~l~~~--p~~~R~~~~~~~~~~~iYv 68 (346)
T TIGR03547 2 PDLPVGFKNGTGAII---GDKVYVGLGS--A------GTSWYKLDLKKPSKGWQKIADF--PGGPRNQAVAAAIDGKLYV 68 (346)
T ss_pred CCCCccccCceEEEE---CCEEEEEccc--c------CCeeEEEECCCCCCCceECCCC--CCCCcccceEEEECCEEEE
Confidence 468899998888888 8999999995 1 257899996 57899999875 4 48999999999999999
Q ss_pred EeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEE-EECCEEEEEeeeecCCC---------------
Q 006473 140 FGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMV-LYKHKIIVFGGFYDTLR--------------- 203 (643)
Q Consensus 140 fGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~-~~~~~lyvfGG~~~~~~--------------- 203 (643)
+||............++++|+||+.+++|+.++. .+|.+|.+|+++ +++++||++||+.....
T Consensus 69 ~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~-~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 147 (346)
T TIGR03547 69 FGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT-RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSE 147 (346)
T ss_pred EeCCCCCCCCCcceecccEEEEECCCCEEecCCC-CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccch
Confidence 9997543211112357899999999999999974 357888888877 78999999999853200
Q ss_pred ---------------ceeeeccEEEEEcCCCceEEeccCCCCCCCC-CccceeEEEeCCEEEEEcCCCCCCCCccCCCCC
Q 006473 204 ---------------EVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS-PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEK 267 (643)
Q Consensus 204 ---------------~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~-~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~ 267 (643)
...+++.+++||+.+++|+.+.++ |. +|.+++++.++++|||+||....
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~-----p~~~r~~~~~~~~~~~iyv~GG~~~~---------- 212 (346)
T TIGR03547 148 PKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGEN-----PFLGTAGSAIVHKGNKLLLINGEIKP---------- 212 (346)
T ss_pred hhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccC-----CCCcCCCceEEEECCEEEEEeeeeCC----------
Confidence 001247899999999999999887 54 78999999999999999998543
Q ss_pred CceeeeEEEEe--CCCCeeEEeccCCCC----CCCceeeEEEEECCeEEEeccccccccCccc----cc----cccCCcE
Q 006473 268 GIIHSDLWSLD--PRTWEWSKVKKIGMP----PGPRAGFSMCVHKKRALLFGGVVDMEMKGDV----IM----SLFLNEL 333 (643)
Q Consensus 268 ~~~~~dv~~yd--~~t~~W~~l~~~g~~----P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~----~~----~~~~ndl 333 (643)
+.....+++|+ +.+++|+.+..+..+ +..|.+|++++++++|||+||.+.....+.. .. ....+.+
T Consensus 213 ~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (346)
T TIGR03547 213 GLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSS 292 (346)
T ss_pred CccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEe
Confidence 12234455554 577899999876332 1234577788999999999998632110000 00 0012458
Q ss_pred EEEECCCCcEEEeEe
Q 006473 334 YGFQLDNHRWYPLEL 348 (643)
Q Consensus 334 ~~yd~~t~~W~~l~~ 348 (643)
.+||+++++|..+..
T Consensus 293 e~yd~~~~~W~~~~~ 307 (346)
T TIGR03547 293 EVYALDNGKWSKVGK 307 (346)
T ss_pred eEEEecCCcccccCC
Confidence 899999999987765
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=341.34 Aligned_cols=265 Identities=13% Similarity=0.207 Sum_probs=220.6
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (643)
..+++||+.+++|..++++ |.+|.+|+++++++.|||+||..... ..++++|+||+.++.|..+++ +|.+|
T Consensus 272 ~~v~~yd~~~~~W~~l~~m--p~~r~~~~~a~l~~~IYviGG~~~~~-----~~~~~v~~Yd~~~n~W~~~~~--m~~~R 342 (557)
T PHA02713 272 PCILVYNINTMEYSVISTI--PNHIINYASAIVDNEIIIAGGYNFNN-----PSLNKVYKINIENKIHVELPP--MIKNR 342 (557)
T ss_pred CCEEEEeCCCCeEEECCCC--CccccceEEEEECCEEEEEcCCCCCC-----CccceEEEEECCCCeEeeCCC--Ccchh
Confidence 4789999999999999764 68899999999999999999974221 146899999999999999987 89999
Q ss_pred ceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCC
Q 006473 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVST 260 (643)
Q Consensus 181 s~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~ 260 (643)
++|++++++++||++||+.+. ..++.+++||+.+++|+.++++ |.+|.++++++++++|||+||.......
T Consensus 343 ~~~~~~~~~g~IYviGG~~~~----~~~~sve~Ydp~~~~W~~~~~m-----p~~r~~~~~~~~~g~IYviGG~~~~~~~ 413 (557)
T PHA02713 343 CRFSLAVIDDTIYAIGGQNGT----NVERTIECYTMGDDKWKMLPDM-----PIALSSYGMCVLDQYIYIIGGRTEHIDY 413 (557)
T ss_pred hceeEEEECCEEEEECCcCCC----CCCceEEEEECCCCeEEECCCC-----CcccccccEEEECCEEEEEeCCCccccc
Confidence 999999999999999998543 2478899999999999999988 8999999999999999999998642000
Q ss_pred -cc------CCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcE
Q 006473 261 -DK------NQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNEL 333 (643)
Q Consensus 261 -~~------~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl 333 (643)
.. ........++.+++|||.+++|+.++++ |.+|.++++++++++|||+||.++. ....+.+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m---~~~r~~~~~~~~~~~IYv~GG~~~~--------~~~~~~v 482 (557)
T PHA02713 414 TSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF---WTGTIRPGVVSHKDDIYVVCDIKDE--------KNVKTCI 482 (557)
T ss_pred ccccccccccccccccccceEEEECCCCCeEeecCCC---CcccccCcEEEECCEEEEEeCCCCC--------CccceeE
Confidence 00 0000012367899999999999999865 7789999999999999999998641 1123568
Q ss_pred EEEECCC-CcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccC
Q 006473 334 YGFQLDN-HRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECV 412 (643)
Q Consensus 334 ~~yd~~t-~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (643)
++|||.+ ++|+.++.
T Consensus 483 e~Ydp~~~~~W~~~~~---------------------------------------------------------------- 498 (557)
T PHA02713 483 FRYNTNTYNGWELITT---------------------------------------------------------------- 498 (557)
T ss_pred EEecCCCCCCeeEccc----------------------------------------------------------------
Confidence 9999999 89998876
Q ss_pred CcceeecCceeeeecCCCCCCccccccccccCCCCCcCCccccccceeeecCeEEEecceEeecCeEEeecceeccccCC
Q 006473 413 PNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSK 492 (643)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~tl~D~~~ldl~k 492 (643)
||.+|..+++++++++||++||... ...+.+||+.+
T Consensus 499 -------------------------------------m~~~r~~~~~~~~~~~iyv~Gg~~~-------~~~~e~yd~~~ 534 (557)
T PHA02713 499 -------------------------------------TESRLSALHTILHDNTIMMLHCYES-------YMLQDTFNVYT 534 (557)
T ss_pred -------------------------------------cCcccccceeEEECCEEEEEeeecc-------eeehhhcCccc
Confidence 7999999999999999999999853 23577899999
Q ss_pred ccceEEeccCC
Q 006473 493 LDEWKCIIPAS 503 (643)
Q Consensus 493 ~d~w~~i~~~~ 503 (643)
+.|+.+.+..
T Consensus 535 -~~W~~~~~~~ 544 (557)
T PHA02713 535 -YEWNHICHQH 544 (557)
T ss_pred -ccccchhhhc
Confidence 9999998764
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=319.51 Aligned_cols=310 Identities=19% Similarity=0.275 Sum_probs=228.3
Q ss_pred eeEEeeccCCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECC--CCcEEEecCCCCCCCceeeEEEE
Q 006473 55 KEVHVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVE--KQEWKVISSPNSPPPRSAHQAVS 132 (643)
Q Consensus 55 ~~~~~~~~~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~--~~~W~~l~s~~~P~pRs~ha~~~ 132 (643)
..+.++..+++|.||..++.+++ +++|||+||. . .+.+|+||+. +++|..+++++ ..+|++|++++
T Consensus 15 ~~~~~~~l~~lP~~~~~~~~~~~---~~~iyv~gG~---~-----~~~~~~~d~~~~~~~W~~l~~~p-~~~r~~~~~v~ 82 (376)
T PRK14131 15 FAANAEQLPDLPVPFKNGTGAID---NNTVYVGLGS---A-----GTSWYKLDLNAPSKGWTKIAAFP-GGPREQAVAAF 82 (376)
T ss_pred cceecccCCCCCcCccCCeEEEE---CCEEEEEeCC---C-----CCeEEEEECCCCCCCeEECCcCC-CCCcccceEEE
Confidence 44556678889999998888888 8999999995 1 1457899986 47899987643 25899999999
Q ss_pred ECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEE-ECCEEEEEeeeecCCC--------
Q 006473 133 WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL-YKHKIIVFGGFYDTLR-------- 203 (643)
Q Consensus 133 ~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~-~~~~lyvfGG~~~~~~-------- 203 (643)
+++.|||+||............++++|+||+.+++|+.++. ..|.+|.+|++++ .+++||+|||......
T Consensus 83 ~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~-~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~ 161 (376)
T PRK14131 83 IDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT-RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLA 161 (376)
T ss_pred ECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCC-CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhh
Confidence 99999999998642111112357899999999999999975 2477888898887 7999999999753100
Q ss_pred ----------------------ceeeeccEEEEEcCCCceEEeccCCCCCCC-CCccceeEEEeCCEEEEEcCCCCCCCC
Q 006473 204 ----------------------EVRYYNDLYVFDLDQFKWQEIKPRFGSMWP-SPRSGFQFFVYQDEVFLYGGYSKEVST 260 (643)
Q Consensus 204 ----------------------~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P-~~R~~~s~~~~~~~iyv~GG~~~~~~~ 260 (643)
...++++|++||+.+++|+.+.++ | .+|.+|+++.++++|||+||....
T Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~-----p~~~~~~~a~v~~~~~iYv~GG~~~~--- 233 (376)
T PRK14131 162 AAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGES-----PFLGTAGSAVVIKGNKLWLINGEIKP--- 233 (376)
T ss_pred hcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcC-----CCCCCCcceEEEECCEEEEEeeeECC---
Confidence 001357899999999999998877 5 478899999999999999997543
Q ss_pred ccCCCCCCceeeeEE--EEeCCCCeeEEeccCCCCC-----CCceeeEEEEECCeEEEeccccccccCcccccccc----
Q 006473 261 DKNQSEKGIIHSDLW--SLDPRTWEWSKVKKIGMPP-----GPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLF---- 329 (643)
Q Consensus 261 ~~~~~~~~~~~~dv~--~yd~~t~~W~~l~~~g~~P-----~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~---- 329 (643)
+....++| .||+.+++|+.+..+..++ ..+.++.+++++++|||+||........+.....+
T Consensus 234 -------~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~ 306 (376)
T PRK14131 234 -------GLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHE 306 (376)
T ss_pred -------CcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCccccc
Confidence 11223344 5678899999998762211 11234456788999999999864321100000000
Q ss_pred ----CCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhccccc
Q 006473 330 ----LNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNI 405 (643)
Q Consensus 330 ----~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (643)
...+.+||+++++|..+..
T Consensus 307 ~~~~~~~~e~yd~~~~~W~~~~~--------------------------------------------------------- 329 (376)
T PRK14131 307 GLKKSWSDEIYALVNGKWQKVGE--------------------------------------------------------- 329 (376)
T ss_pred CCcceeehheEEecCCcccccCc---------------------------------------------------------
Confidence 1246799999999987654
Q ss_pred ccccccCCcceeecCceeeeecCCCCCCccccccccccCCCCCcCCccccccceeeecCeEEEecceEeecCeEEeecce
Q 006473 406 DNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDL 485 (643)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~tl~D~ 485 (643)
||.||..++++++++.|||+||....+ ..++|+
T Consensus 330 --------------------------------------------lp~~r~~~~av~~~~~iyv~GG~~~~~---~~~~~v 362 (376)
T PRK14131 330 --------------------------------------------LPQGLAYGVSVSWNNGVLLIGGETAGG---KAVSDV 362 (376)
T ss_pred --------------------------------------------CCCCccceEEEEeCCEEEEEcCCCCCC---cEeeeE
Confidence 799999999999999999999975444 458899
Q ss_pred eccccCCccceE
Q 006473 486 YSLNLSKLDEWK 497 (643)
Q Consensus 486 ~~ldl~k~d~w~ 497 (643)
|.|++.. ..+.
T Consensus 363 ~~~~~~~-~~~~ 373 (376)
T PRK14131 363 TLLSWDG-KKLT 373 (376)
T ss_pred EEEEEcC-CEEE
Confidence 9988875 4443
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=330.97 Aligned_cols=245 Identities=13% Similarity=0.219 Sum_probs=208.4
Q ss_pred eeccCCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEE
Q 006473 59 VEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLY 138 (643)
Q Consensus 59 ~~~~~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iy 138 (643)
|....++|.+|.+++++++ ++.|||+||...+ ....+.+++|||.+++|..++++ |.+|++|++++++++||
T Consensus 284 W~~l~~mp~~r~~~~~a~l---~~~IYviGG~~~~---~~~~~~v~~Yd~~~n~W~~~~~m--~~~R~~~~~~~~~g~IY 355 (557)
T PHA02713 284 YSVISTIPNHIINYASAIV---DNEIIIAGGYNFN---NPSLNKVYKINIENKIHVELPPM--IKNRCRFSLAVIDDTIY 355 (557)
T ss_pred EEECCCCCccccceEEEEE---CCEEEEEcCCCCC---CCccceEEEEECCCCeEeeCCCC--cchhhceeEEEECCEEE
Confidence 3455678999999999998 8999999995222 22468999999999999998775 68999999999999999
Q ss_pred EEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCC--------------c
Q 006473 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLR--------------E 204 (643)
Q Consensus 139 vfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~--------------~ 204 (643)
++||..... .++.+++||+.+++|+.+++ +|.+|++|++++++++||++||...... .
T Consensus 356 viGG~~~~~------~~~sve~Ydp~~~~W~~~~~--mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 356 AIGGQNGTN------VERTIECYTMGDDKWKMLPD--MPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred EECCcCCCC------CCceEEEEECCCCeEEECCC--CCcccccccEEEECCEEEEEeCCCccccccccccccccccccc
Confidence 999975332 46889999999999999987 8999999999999999999999864211 0
Q ss_pred eeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCC-Ce
Q 006473 205 VRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT-WE 283 (643)
Q Consensus 205 ~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t-~~ 283 (643)
...++.+++|||.+++|+.++++ |.+|.++++++++++|||+||++.. ....+.+++|||.+ ++
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m-----~~~r~~~~~~~~~~~IYv~GG~~~~----------~~~~~~ve~Ydp~~~~~ 492 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNF-----WTGTIRPGVVSHKDDIYVVCDIKDE----------KNVKTCIFRYNTNTYNG 492 (557)
T ss_pred ccccceEEEECCCCCeEeecCCC-----CcccccCcEEEECCEEEEEeCCCCC----------CccceeEEEecCCCCCC
Confidence 11367899999999999999988 8899999999999999999998743 12345689999999 89
Q ss_pred eEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEec
Q 006473 284 WSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELR 349 (643)
Q Consensus 284 W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~ 349 (643)
|+.+.++ |.+|.++++++++++||++||..+ ...+.+||+.+++|+.+...
T Consensus 493 W~~~~~m---~~~r~~~~~~~~~~~iyv~Gg~~~------------~~~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 493 WELITTT---ESRLSALHTILHDNTIMMLHCYES------------YMLQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred eeEcccc---CcccccceeEEECCEEEEEeeecc------------eeehhhcCcccccccchhhh
Confidence 9999865 889999999999999999999865 23689999999999999874
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=329.46 Aligned_cols=242 Identities=23% Similarity=0.400 Sum_probs=218.3
Q ss_pred eccCCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEE
Q 006473 60 EDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYI 139 (643)
Q Consensus 60 ~~~~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyv 139 (643)
....++|.+|..++++++ ++.||++||... ....++.+++||+.+++|..+++++ .+|++|+++++++.||+
T Consensus 314 ~~~a~m~~~r~~~~~~~~---~~~lYv~GG~~~---~~~~l~~ve~YD~~~~~W~~~a~M~--~~R~~~~v~~l~g~iYa 385 (571)
T KOG4441|consen 314 SSLAPMPSPRCRVGVAVL---NGKLYVVGGYDS---GSDRLSSVERYDPRTNQWTPVAPMN--TKRSDFGVAVLDGKLYA 385 (571)
T ss_pred eecCCCCcccccccEEEE---CCEEEEEccccC---CCcccceEEEecCCCCceeccCCcc--CccccceeEEECCEEEE
Confidence 366789999999999999 899999999632 2346799999999999999998875 89999999999999999
Q ss_pred EeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCC
Q 006473 140 FGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (643)
Q Consensus 140 fGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~ 219 (643)
+||.+.. ..++.+.+||+.+++|+.+.+ ++.+|++|++++++++||++||..+..+ +++.+.+|||.++
T Consensus 386 vGG~dg~------~~l~svE~YDp~~~~W~~va~--m~~~r~~~gv~~~~g~iYi~GG~~~~~~---~l~sve~YDP~t~ 454 (571)
T KOG4441|consen 386 VGGFDGE------KSLNSVECYDPVTNKWTPVAP--MLTRRSGHGVAVLGGKLYIIGGGDGSSN---CLNSVECYDPETN 454 (571)
T ss_pred Eeccccc------cccccEEEecCCCCcccccCC--CCcceeeeEEEEECCEEEEEcCcCCCcc---ccceEEEEcCCCC
Confidence 9999843 357899999999999999988 8889999999999999999999877543 7999999999999
Q ss_pred ceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCcee
Q 006473 220 KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299 (643)
Q Consensus 220 ~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g 299 (643)
+|+.++++ +.+|.+++++++++.||++||+++. .....+.+|||.+++|+.+..+ +.+|.+
T Consensus 455 ~W~~~~~M-----~~~R~~~g~a~~~~~iYvvGG~~~~-----------~~~~~VE~ydp~~~~W~~v~~m---~~~rs~ 515 (571)
T KOG4441|consen 455 TWTLIAPM-----NTRRSGFGVAVLNGKIYVVGGFDGT-----------SALSSVERYDPETNQWTMVAPM---TSPRSA 515 (571)
T ss_pred ceeecCCc-----ccccccceEEEECCEEEEECCccCC-----------CccceEEEEcCCCCceeEcccC---cccccc
Confidence 99999999 8999999999999999999999874 4556699999999999999765 679999
Q ss_pred eEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 300 FSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 300 ~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
++++++++++|++||..+ ..+++.+.+||+.+++|+.+..
T Consensus 516 ~g~~~~~~~ly~vGG~~~---------~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 516 VGVVVLGGKLYAVGGFDG---------NNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred ccEEEECCEEEEEecccC---------ccccceeEEcCCCCCceeeCCC
Confidence 999999999999999765 5678999999999999999887
|
|
| >KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=306.39 Aligned_cols=320 Identities=26% Similarity=0.461 Sum_probs=258.9
Q ss_pred ceeeEEeeccCCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEe-cCCCCCCCceeeEEE
Q 006473 53 KKKEVHVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVI-SSPNSPPPRSAHQAV 131 (643)
Q Consensus 53 ~~~~~~~~~~~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l-~s~~~P~pRs~ha~~ 131 (643)
+|+.+.- ...+.|.||.+|-++++ ..-|+||||- |.. ....+++||..+++|..- ..+..|++...|.++
T Consensus 18 rWrrV~~-~tGPvPrpRHGHRAVai---kELiviFGGG--NEG---iiDELHvYNTatnqWf~PavrGDiPpgcAA~Gfv 88 (830)
T KOG4152|consen 18 RWRRVQQ-STGPVPRPRHGHRAVAI---KELIVIFGGG--NEG---IIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFV 88 (830)
T ss_pred ceEEEec-ccCCCCCccccchheee---eeeEEEecCC--ccc---chhhhhhhccccceeecchhcCCCCCchhhcceE
Confidence 4554443 56788999999999999 7889999992 222 678999999999999843 245678899999999
Q ss_pred EECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCC-----CCCCCceeEEEEECCEEEEEeeeecCCC---
Q 006473 132 SWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-----CPSPRSGHRMVLYKHKIIVFGGFYDTLR--- 203 (643)
Q Consensus 132 ~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g-----~P~~Rs~h~~~~~~~~lyvfGG~~~~~~--- 203 (643)
..+.+||+|||+.... .+.||+|.+-...-.|.++.+.. .|.||-||+..+++++.|+|||..+...
T Consensus 89 cdGtrilvFGGMvEYG-----kYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpk 163 (830)
T KOG4152|consen 89 CDGTRILVFGGMVEYG-----KYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPK 163 (830)
T ss_pred ecCceEEEEccEeeec-----cccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcc
Confidence 9999999999986543 36789888877777888887643 2889999999999999999999864332
Q ss_pred --ceeeeccEEEEEcCCC----ceEEeccCCCCCCCCCccceeEEEe------CCEEEEEcCCCCCCCCccCCCCCCcee
Q 006473 204 --EVRYYNDLYVFDLDQF----KWQEIKPRFGSMWPSPRSGFQFFVY------QDEVFLYGGYSKEVSTDKNQSEKGIIH 271 (643)
Q Consensus 204 --~~~~~~dv~~yD~~t~----~W~~v~~~~~~~~P~~R~~~s~~~~------~~~iyv~GG~~~~~~~~~~~~~~~~~~ 271 (643)
-.+|+||+|++.+.-. .|...-.. +..|.+|..|+++++ ..++|||||.++ ..+
T Consensus 164 nNvPrYLnDlY~leL~~Gsgvv~W~ip~t~--Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G------------~RL 229 (830)
T KOG4152|consen 164 NNVPRYLNDLYILELRPGSGVVAWDIPITY--GVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG------------CRL 229 (830)
T ss_pred cccchhhcceEEEEeccCCceEEEeccccc--CCCCCCcccceeEEEEeccCCcceEEEEccccc------------ccc
Confidence 2459999999998743 38766544 677999999999998 458999999986 578
Q ss_pred eeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEecccccc-----ccCccccccccCCcEEEEECCCCcEEEe
Q 006473 272 SDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDM-----EMKGDVIMSLFLNELYGFQLDNHRWYPL 346 (643)
Q Consensus 272 ~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~-----~~~~~~~~~~~~ndl~~yd~~t~~W~~l 346 (643)
.|+|.+|+.+.+|.+....|.+|.||+-|+++++++++|||||.... ....+.-+-.+.+.+-++|+++..|..|
T Consensus 230 gDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl 309 (830)
T KOG4152|consen 230 GDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETL 309 (830)
T ss_pred cceeEEecceeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeee
Confidence 99999999999999999999999999999999999999999998542 2222223345678899999999999999
Q ss_pred EecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeecCceeeee
Q 006473 347 ELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAK 426 (643)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (643)
-... .+|
T Consensus 310 ~~d~------------------------------------~ed------------------------------------- 316 (830)
T KOG4152|consen 310 LMDT------------------------------------LED------------------------------------- 316 (830)
T ss_pred eecc------------------------------------ccc-------------------------------------
Confidence 8721 000
Q ss_pred cCCCCCCccccccccccCCCCCcCCccccccceeeecCeEEEecceEe---ecCeEEeecceeccccCCcc
Q 006473 427 SGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMME---INDQEITLDDLYSLNLSKLD 494 (643)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e---~g~~e~tl~D~~~ldl~k~d 494 (643)
.-+|.+|..||.+.++..|||+-|... .-+.++++-|||-||..+..
T Consensus 317 ---------------------~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTekPp 366 (830)
T KOG4152|consen 317 ---------------------NTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTEKPP 366 (830)
T ss_pred ---------------------cccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhcccCCC
Confidence 005999999999999999999999642 24667999999999998755
|
|
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=281.23 Aligned_cols=273 Identities=25% Similarity=0.453 Sum_probs=230.4
Q ss_pred cEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCC-----------CCCCC
Q 006473 112 EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-----------CPSPR 180 (643)
Q Consensus 112 ~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g-----------~P~~R 180 (643)
.|..--.+. +.|.+|++++++..||-|||+.+...-. ..---||.+||..+-.|+++++.- .|..|
T Consensus 3 ~WTVHLeGG--PrRVNHAavaVG~riYSFGGYCsGedy~-~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqR 79 (392)
T KOG4693|consen 3 TWTVHLEGG--PRRVNHAAVAVGSRIYSFGGYCSGEDYD-AKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQR 79 (392)
T ss_pred eEEEEecCC--cccccceeeeecceEEecCCcccccccc-cCCcceeEEeeccceeEEecCcccccccccCCCCccchhh
Confidence 466433333 5799999999999999999987654321 112247999999999999998721 27789
Q ss_pred ceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCC
Q 006473 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVST 260 (643)
Q Consensus 181 s~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~ 260 (643)
+||+.+.+++++||.||.++... ..|.++.||+.+++|..+... +..|.+|-||++|++++.+||||||...
T Consensus 80 YGHtvV~y~d~~yvWGGRND~eg---aCN~Ly~fDp~t~~W~~p~v~--G~vPgaRDGHsAcV~gn~MyiFGGye~~--- 151 (392)
T KOG4693|consen 80 YGHTVVEYQDKAYVWGGRNDDEG---ACNLLYEFDPETNVWKKPEVE--GFVPGARDGHSACVWGNQMYIFGGYEED--- 151 (392)
T ss_pred cCceEEEEcceEEEEcCccCccc---ccceeeeecccccccccccee--eecCCccCCceeeEECcEEEEecChHHH---
Confidence 99999999999999999987533 689999999999999988776 6679999999999999999999999876
Q ss_pred ccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCC
Q 006473 261 DKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (643)
Q Consensus 261 ~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (643)
...+.+|++.||..|.+|..+...|.||.-|-.|+++++++++|||||..+....-+++...+.+.|-.+|+.|
T Consensus 152 ------a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T 225 (392)
T KOG4693|consen 152 ------AQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLAT 225 (392)
T ss_pred ------HHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccc
Confidence 24788999999999999999999999999999999999999999999998865555566678889999999999
Q ss_pred CcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeecC
Q 006473 341 HRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDD 420 (643)
Q Consensus 341 ~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (643)
..|...+..
T Consensus 226 ~aW~r~p~~----------------------------------------------------------------------- 234 (392)
T KOG4693|consen 226 GAWTRTPEN----------------------------------------------------------------------- 234 (392)
T ss_pred cccccCCCC-----------------------------------------------------------------------
Confidence 999876441
Q ss_pred ceeeeecCCCCCCccccccccccCCCCCcCCccccccceeeecCeEEEecceEeecCeEEeecceeccccCCccceEEec
Q 006473 421 GVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCII 500 (643)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~tl~D~~~ldl~k~d~w~~i~ 500 (643)
.++|..|..|++.|.++.||||||+...= ..-++|||+||..+ -.|+.|.
T Consensus 235 ---------------------------~~~P~GRRSHS~fvYng~~Y~FGGYng~l--n~HfndLy~FdP~t-~~W~~I~ 284 (392)
T KOG4693|consen 235 ---------------------------TMKPGGRRSHSTFVYNGKMYMFGGYNGTL--NVHFNDLYCFDPKT-SMWSVIS 284 (392)
T ss_pred ---------------------------CcCCCcccccceEEEcceEEEecccchhh--hhhhcceeeccccc-chheeee
Confidence 12699999999999999999999998443 34589999999988 8999997
Q ss_pred cC
Q 006473 501 PA 502 (643)
Q Consensus 501 ~~ 502 (643)
..
T Consensus 285 ~~ 286 (392)
T KOG4693|consen 285 VR 286 (392)
T ss_pred cc
Confidence 65
|
|
| >KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=314.11 Aligned_cols=256 Identities=33% Similarity=0.586 Sum_probs=223.4
Q ss_pred ccCCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEec-CCCCCCCceeeEEEEECCEEEE
Q 006473 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVIS-SPNSPPPRSAHQAVSWKNYLYI 139 (643)
Q Consensus 61 ~~~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~-s~~~P~pRs~ha~~~~~~~iyv 139 (643)
.....|.+|.+|+++.+ ++++|||||...+..... .+||+||..+..|.... .+..|.+|++|++++++++||+
T Consensus 53 ~~~~~p~~R~~hs~~~~---~~~~~vfGG~~~~~~~~~--~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~l 127 (482)
T KOG0379|consen 53 VLGVGPIPRAGHSAVLI---GNKLYVFGGYGSGDRLTD--LDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYL 127 (482)
T ss_pred cCCCCcchhhccceeEE---CCEEEEECCCCCCCcccc--ceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEE
Confidence 34568999999999999 899999999743322211 16999999999999654 4557889999999999999999
Q ss_pred EeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCC-CCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCC
Q 006473 140 FGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (643)
Q Consensus 140 fGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~-P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t 218 (643)
|||.... ..++++++.||+.|++|..+.+.+. |++|.+|++++++++||||||...... ++|++|+||+.+
T Consensus 128 fGG~~~~-----~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~---~~ndl~i~d~~~ 199 (482)
T KOG0379|consen 128 FGGTDKK-----YRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGD---SLNDLHIYDLET 199 (482)
T ss_pred EccccCC-----CCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCccc---ceeeeeeecccc
Confidence 9998762 2358999999999999999988776 999999999999999999999876543 799999999999
Q ss_pred CceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCce
Q 006473 219 FKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRA 298 (643)
Q Consensus 219 ~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~ 298 (643)
.+|.++... +..|.||++|+++++++++|||||.+.. ..+++|+|+||+.+..|.++...+..|.+|+
T Consensus 200 ~~W~~~~~~--g~~P~pR~gH~~~~~~~~~~v~gG~~~~----------~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~ 267 (482)
T KOG0379|consen 200 STWSELDTQ--GEAPSPRYGHAMVVVGNKLLVFGGGDDG----------DVYLNDVHILDLSTWEWKLLPTGGDLPSPRS 267 (482)
T ss_pred ccceecccC--CCCCCCCCCceEEEECCeEEEEeccccC----------CceecceEeeecccceeeeccccCCCCCCcc
Confidence 999999887 6679999999999999999999999832 4899999999999999999998899999999
Q ss_pred eeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 299 GFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 299 g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
+|++++.+..++||||..... ...+.++|.||+.+..|..+..
T Consensus 268 ~h~~~~~~~~~~l~gG~~~~~-------~~~l~~~~~l~~~~~~w~~~~~ 310 (482)
T KOG0379|consen 268 GHSLTVSGDHLLLFGGGTDPK-------QEPLGDLYGLDLETLVWSKVES 310 (482)
T ss_pred eeeeEEECCEEEEEcCCcccc-------cccccccccccccccceeeeec
Confidence 999999999999999987531 1258899999999999999987
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=319.35 Aligned_cols=260 Identities=19% Similarity=0.289 Sum_probs=216.9
Q ss_pred eccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC
Q 006473 100 YGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (643)
Q Consensus 100 ~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (643)
+..+.+|++..++|..++.. | .+..|+++++++.|||+||..... ...+++|+||+.+++|..++. +|.+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~lyv~GG~~~~~-----~~~~~v~~yd~~~~~W~~~~~--~~~~ 332 (534)
T PHA03098 263 TYNYITNYSPLSEINTIIDI--H-YVYCFGSVVLNNVIYFIGGMNKNN-----LSVNSVVSYDTKTKSWNKVPE--LIYP 332 (534)
T ss_pred hceeeecchhhhhcccccCc--c-ccccceEEEECCEEEEECCCcCCC-----CeeccEEEEeCCCCeeeECCC--CCcc
Confidence 34556788889999987542 2 345678889999999999985432 246799999999999999877 7899
Q ss_pred CceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCC
Q 006473 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVS 259 (643)
Q Consensus 180 Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~ 259 (643)
|.+|++++++++||++||... ...++++++||+.+++|+.++++ |.+|++|+++.++++|||+||....
T Consensus 333 R~~~~~~~~~~~lyv~GG~~~----~~~~~~v~~yd~~~~~W~~~~~l-----p~~r~~~~~~~~~~~iYv~GG~~~~-- 401 (534)
T PHA03098 333 RKNPGVTVFNNRIYVIGGIYN----SISLNTVESWKPGESKWREEPPL-----IFPRYNPCVVNVNNLIYVIGGISKN-- 401 (534)
T ss_pred cccceEEEECCEEEEEeCCCC----CEecceEEEEcCCCCceeeCCCc-----CcCCccceEEEECCEEEEECCcCCC--
Confidence 999999999999999999863 23578999999999999999887 8899999999999999999997543
Q ss_pred CccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECC
Q 006473 260 TDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD 339 (643)
Q Consensus 260 ~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~ 339 (643)
...++++++||+.+++|+.+.++ |.+|.+|++++++++|||+||.+.... ...++.+++||+.
T Consensus 402 --------~~~~~~v~~yd~~t~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~------~~~~~~v~~yd~~ 464 (534)
T PHA03098 402 --------DELLKTVECFSLNTNKWSKGSPL---PISHYGGCAIYHDGKIYVIGGISYIDN------IKVYNIVESYNPV 464 (534)
T ss_pred --------CcccceEEEEeCCCCeeeecCCC---CccccCceEEEECCEEEEECCccCCCC------CcccceEEEecCC
Confidence 23478899999999999998754 788999999999999999999864221 1235679999999
Q ss_pred CCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeec
Q 006473 340 NHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVD 419 (643)
Q Consensus 340 t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (643)
+++|..++.
T Consensus 465 ~~~W~~~~~----------------------------------------------------------------------- 473 (534)
T PHA03098 465 TNKWTELSS----------------------------------------------------------------------- 473 (534)
T ss_pred CCceeeCCC-----------------------------------------------------------------------
Confidence 999998764
Q ss_pred CceeeeecCCCCCCccccccccccCCCCCcCCccccccceeeecCeEEEecceEeecCeEEeecceeccccCCccceEEe
Q 006473 420 DGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCI 499 (643)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~tl~D~~~ldl~k~d~w~~i 499 (643)
+|.||.++++++.++.|||+||.... ..+++++.||+.+ +.|+.+
T Consensus 474 ------------------------------~~~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~v~~yd~~~-~~W~~~ 518 (534)
T PHA03098 474 ------------------------------LNFPRINASLCIFNNKIYVVGGDKYE----YYINEIEVYDDKT-NTWTLF 518 (534)
T ss_pred ------------------------------CCcccccceEEEECCEEEEEcCCcCC----cccceeEEEeCCC-CEEEec
Confidence 68899999999999999999998532 2378999999998 999988
Q ss_pred ccCC
Q 006473 500 IPAS 503 (643)
Q Consensus 500 ~~~~ 503 (643)
...+
T Consensus 519 ~~~p 522 (534)
T PHA03098 519 CKFP 522 (534)
T ss_pred CCCc
Confidence 6533
|
|
| >KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=310.74 Aligned_cols=258 Identities=31% Similarity=0.541 Sum_probs=224.4
Q ss_pred CCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCC-CCCCceeEEEEECCEEEEEe
Q 006473 118 SPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFG 196 (643)
Q Consensus 118 s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~-P~~Rs~h~~~~~~~~lyvfG 196 (643)
....|.+|++|+++.+++++|||||........ .+ ++|+||..+..|......+. |.+|++|++++++++||+||
T Consensus 54 ~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~---~~-dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfG 129 (482)
T KOG0379|consen 54 LGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLT---DL-DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFG 129 (482)
T ss_pred CCCCcchhhccceeEECCEEEEECCCCCCCccc---cc-eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEc
Confidence 345689999999999999999999987665431 11 69999999999999887765 89999999999999999999
Q ss_pred eeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEE
Q 006473 197 GFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWS 276 (643)
Q Consensus 197 G~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~ 276 (643)
|.... ..++++|+.||+.+.+|..+.+. +..|.+|.+|++++++++||||||.... +..++++|+
T Consensus 130 G~~~~---~~~~~~l~~~d~~t~~W~~l~~~--~~~P~~r~~Hs~~~~g~~l~vfGG~~~~----------~~~~ndl~i 194 (482)
T KOG0379|consen 130 GTDKK---YRNLNELHSLDLSTRTWSLLSPT--GDPPPPRAGHSATVVGTKLVVFGGIGGT----------GDSLNDLHI 194 (482)
T ss_pred cccCC---CCChhheEeccCCCCcEEEecCc--CCCCCCcccceEEEECCEEEEECCccCc----------ccceeeeee
Confidence 98763 23589999999999999999887 4479999999999999999999999876 238999999
Q ss_pred EeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEecCCCcchh
Q 006473 277 LDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKD 356 (643)
Q Consensus 277 yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~ 356 (643)
||+.+.+|.++...|..|.||.+|+|+++++++|||||.+. ...+++|+|+||+.+..|..+...+.
T Consensus 195 ~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~--------~~~~l~D~~~ldl~~~~W~~~~~~g~----- 261 (482)
T KOG0379|consen 195 YDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDD--------GDVYLNDVHILDLSTWEWKLLPTGGD----- 261 (482)
T ss_pred eccccccceecccCCCCCCCCCCceEEEECCeEEEEecccc--------CCceecceEeeecccceeeeccccCC-----
Confidence 99999999999999999999999999999999999999872 25689999999999999995554210
Q ss_pred hhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeecCceeeeecCCCCCCccc
Q 006473 357 KLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKK 436 (643)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (643)
T Consensus 262 -------------------------------------------------------------------------------- 261 (482)
T KOG0379|consen 262 -------------------------------------------------------------------------------- 261 (482)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCCcCCccccccceeeecCeEEEecceEeecCeEEeecceeccccCCccceEEeccCC
Q 006473 437 KSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIPAS 503 (643)
Q Consensus 437 ~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~tl~D~~~ldl~k~d~w~~i~~~~ 503 (643)
.|.||+.|++++.+++++|+||.... ....++|+|.|++.+ ..|..+....
T Consensus 262 -------------~p~~R~~h~~~~~~~~~~l~gG~~~~--~~~~l~~~~~l~~~~-~~w~~~~~~~ 312 (482)
T KOG0379|consen 262 -------------LPSPRSGHSLTVSGDHLLLFGGGTDP--KQEPLGDLYGLDLET-LVWSKVESVG 312 (482)
T ss_pred -------------CCCCcceeeeEEECCEEEEEcCCccc--ccccccccccccccc-cceeeeeccc
Confidence 59999999999999999999998643 112699999999997 9999998766
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=310.40 Aligned_cols=238 Identities=18% Similarity=0.308 Sum_probs=200.4
Q ss_pred CCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCC
Q 006473 69 RSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPN 148 (643)
Q Consensus 69 R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~ 148 (643)
+..|+++++ ++.||++||.... ....+++++||+.+++|..++++ |.+|.+|++++++++|||+||....
T Consensus 285 ~~~~~~~~~---~~~lyv~GG~~~~---~~~~~~v~~yd~~~~~W~~~~~~--~~~R~~~~~~~~~~~lyv~GG~~~~-- 354 (534)
T PHA03098 285 VYCFGSVVL---NNVIYFIGGMNKN---NLSVNSVVSYDTKTKSWNKVPEL--IYPRKNPGVTVFNNRIYVIGGIYNS-- 354 (534)
T ss_pred cccceEEEE---CCEEEEECCCcCC---CCeeccEEEEeCCCCeeeECCCC--CcccccceEEEECCEEEEEeCCCCC--
Confidence 445677777 8999999996322 23568999999999999988764 5789999999999999999998632
Q ss_pred CCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCC
Q 006473 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (643)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (643)
..++++++||+.+++|+.+++ +|.+|++|++++++++||++||...... .++++++||+.+++|+.+.++
T Consensus 355 ----~~~~~v~~yd~~~~~W~~~~~--lp~~r~~~~~~~~~~~iYv~GG~~~~~~---~~~~v~~yd~~t~~W~~~~~~- 424 (534)
T PHA03098 355 ----ISLNTVESWKPGESKWREEPP--LIFPRYNPCVVNVNNLIYVIGGISKNDE---LLKTVECFSLNTNKWSKGSPL- 424 (534)
T ss_pred ----EecceEEEEcCCCCceeeCCC--cCcCCccceEEEECCEEEEECCcCCCCc---ccceEEEEeCCCCeeeecCCC-
Confidence 246899999999999999887 8899999999999999999999754322 478999999999999999877
Q ss_pred CCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCe
Q 006473 229 GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKR 308 (643)
Q Consensus 229 ~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~ 308 (643)
|.+|++|+++.+++.|||+||..... ....++.+++||+.+++|+.+..+ |.+|.++++++++++
T Consensus 425 ----p~~r~~~~~~~~~~~iyv~GG~~~~~--------~~~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~~~ 489 (534)
T PHA03098 425 ----PISHYGGCAIYHDGKIYVIGGISYID--------NIKVYNIVESYNPVTNKWTELSSL---NFPRINASLCIFNNK 489 (534)
T ss_pred ----CccccCceEEEECCEEEEECCccCCC--------CCcccceEEEecCCCCceeeCCCC---CcccccceEEEECCE
Confidence 88999999999999999999986530 112356699999999999999754 678999999999999
Q ss_pred EEEeccccccccCccccccccCCcEEEEECCCCcEEEeEecC
Q 006473 309 ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRK 350 (643)
Q Consensus 309 iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~ 350 (643)
|||+||... ..+.+++++||+.+++|..+...+
T Consensus 490 iyv~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~~p 522 (534)
T PHA03098 490 IYVVGGDKY---------EYYINEIEVYDDKTNTWTLFCKFP 522 (534)
T ss_pred EEEEcCCcC---------CcccceeEEEeCCCCEEEecCCCc
Confidence 999999875 234688999999999999987643
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=275.08 Aligned_cols=237 Identities=19% Similarity=0.297 Sum_probs=182.6
Q ss_pred EeeccCCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcE----EEecCCCCCCCceeeEEEEE
Q 006473 58 HVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW----KVISSPNSPPPRSAHQAVSW 133 (643)
Q Consensus 58 ~~~~~~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W----~~l~s~~~P~pRs~ha~~~~ 133 (643)
.|....++|.+|..++++++ ++.||++||.. +. ..++++++||+.+++| ..++ .+|.+|.+|+++++
T Consensus 52 ~W~~~~~lp~~r~~~~~~~~---~~~lyviGG~~--~~--~~~~~v~~~d~~~~~w~~~~~~~~--~lp~~~~~~~~~~~ 122 (323)
T TIGR03548 52 KWVKDGQLPYEAAYGASVSV---ENGIYYIGGSN--SS--ERFSSVYRITLDESKEELICETIG--NLPFTFENGSACYK 122 (323)
T ss_pred eEEEcccCCccccceEEEEE---CCEEEEEcCCC--CC--CCceeEEEEEEcCCceeeeeeEcC--CCCcCccCceEEEE
Confidence 34466778999998888888 89999999952 22 2468999999999998 4444 35788999999999
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCC-CCCceeEEEEECCEEEEEeeeecCCCceeeeccEE
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP-SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLY 212 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P-~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~ 212 (643)
+++|||+||.... ..++++|+||+.+++|+.+++ +| .+|.+|++++++++||||||.... ...+++
T Consensus 123 ~~~iYv~GG~~~~------~~~~~v~~yd~~~~~W~~~~~--~p~~~r~~~~~~~~~~~iYv~GG~~~~-----~~~~~~ 189 (323)
T TIGR03548 123 DGTLYVGGGNRNG------KPSNKSYLFNLETQEWFELPD--FPGEPRVQPVCVKLQNELYVFGGGSNI-----AYTDGY 189 (323)
T ss_pred CCEEEEEeCcCCC------ccCceEEEEcCCCCCeeECCC--CCCCCCCcceEEEECCEEEEEcCCCCc-----cccceE
Confidence 9999999997432 136899999999999999976 55 479999999999999999997532 246789
Q ss_pred EEEcCCCceEEeccCCCCCCCCCccceeEE-EeCCEEEEEcCCCCCCCCc---------------------cCCCCCCce
Q 006473 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFF-VYQDEVFLYGGYSKEVSTD---------------------KNQSEKGII 270 (643)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~-~~~~~iyv~GG~~~~~~~~---------------------~~~~~~~~~ 270 (643)
+||+.+++|+.+++++....|.++.+++.+ +.+++|||+||++.....+ ........+
T Consensus 190 ~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (323)
T TIGR03548 190 KYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNW 269 (323)
T ss_pred EEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCc
Confidence 999999999999887433345555555544 4479999999987430000 000011123
Q ss_pred eeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEecccccc
Q 006473 271 HSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDM 318 (643)
Q Consensus 271 ~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~ 318 (643)
.+++++||+.+++|+.+..+ +..+|.++++++++++||++||...+
T Consensus 270 ~~~v~~yd~~~~~W~~~~~~--p~~~r~~~~~~~~~~~iyv~GG~~~p 315 (323)
T TIGR03548 270 NRKILIYNVRTGKWKSIGNS--PFFARCGAALLLTGNNIFSINGELKP 315 (323)
T ss_pred CceEEEEECCCCeeeEcccc--cccccCchheEEECCEEEEEeccccC
Confidence 46799999999999999753 23589999999999999999998653
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=286.78 Aligned_cols=208 Identities=17% Similarity=0.232 Sum_probs=181.1
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~ 160 (643)
++.||++||.. + ....+.+++|||.+++|..++++ |.+|..|+++++++.||++||... .+.+++
T Consensus 271 ~~~lyviGG~~--~--~~~~~~v~~Ydp~~~~W~~~~~m--~~~r~~~~~v~~~~~iYviGG~~~---------~~sve~ 335 (480)
T PHA02790 271 GEVVYLIGGWM--N--NEIHNNAIAVNYISNNWIPIPPM--NSPRLYASGVPANNKLYVVGGLPN---------PTSVER 335 (480)
T ss_pred CCEEEEEcCCC--C--CCcCCeEEEEECCCCEEEECCCC--CchhhcceEEEECCEEEEECCcCC---------CCceEE
Confidence 78999999952 2 22567899999999999999875 589999999999999999999642 256899
Q ss_pred EECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCcccee
Q 006473 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240 (643)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s 240 (643)
||+.+++|..+++ +|.+|.+|++++++++||++||.... .+.+.+|||.+++|+.++++ |.+|.+|+
T Consensus 336 ydp~~n~W~~~~~--l~~~r~~~~~~~~~g~IYviGG~~~~------~~~ve~ydp~~~~W~~~~~m-----~~~r~~~~ 402 (480)
T PHA02790 336 WFHGDAAWVNMPS--LLKPRCNPAVASINNVIYVIGGHSET------DTTTEYLLPNHDQWQFGPST-----YYPHYKSC 402 (480)
T ss_pred EECCCCeEEECCC--CCCCCcccEEEEECCEEEEecCcCCC------CccEEEEeCCCCEEEeCCCC-----CCccccce
Confidence 9999999999987 89999999999999999999997532 36789999999999999888 88999999
Q ss_pred EEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEecccccccc
Q 006473 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEM 320 (643)
Q Consensus 241 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~ 320 (643)
+++++++|||+||. +.+|||.+++|+.++++ |.+|.++++++++++||++||.+.
T Consensus 403 ~~~~~~~IYv~GG~-------------------~e~ydp~~~~W~~~~~m---~~~r~~~~~~v~~~~IYviGG~~~--- 457 (480)
T PHA02790 403 ALVFGRRLFLVGRN-------------------AEFYCESSNTWTLIDDP---IYPRDNPELIIVDNKLLLIGGFYR--- 457 (480)
T ss_pred EEEECCEEEEECCc-------------------eEEecCCCCcEeEcCCC---CCCccccEEEEECCEEEEECCcCC---
Confidence 99999999999984 45899999999999764 779999999999999999999863
Q ss_pred CccccccccCCcEEEEECCCCcEEEeE
Q 006473 321 KGDVIMSLFLNELYGFQLDNHRWYPLE 347 (643)
Q Consensus 321 ~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (643)
....+.+++||+.+++|+...
T Consensus 458 ------~~~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 458 ------GSYIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred ------CcccceEEEEECCCCeEEecC
Confidence 123578999999999998754
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=271.17 Aligned_cols=258 Identities=19% Similarity=0.251 Sum_probs=187.3
Q ss_pred ccCCCC-CCCCceEEEEeccCCCEEEEEcceecCC--CCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEE-EECCE
Q 006473 61 DNVPAP-SPRSNCSLNINPLKETELILYGGEFYNG--NKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAV-SWKNY 136 (643)
Q Consensus 61 ~~~~~P-~~R~~~s~~~~~~~~~~lyvfGG~~~~g--~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~-~~~~~ 136 (643)
...++| .+|..++++++ +++|||+||..... .....++++|+||+.+++|+.++. ..|.+|.+|+++ +++++
T Consensus 45 ~l~~~p~~~R~~~~~~~~---~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~-~~p~~~~~~~~~~~~~g~ 120 (346)
T TIGR03547 45 KIADFPGGPRNQAVAAAI---DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT-RSPVGLLGASGFSLHNGQ 120 (346)
T ss_pred ECCCCCCCCcccceEEEE---CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC-CCCCcccceeEEEEeCCE
Confidence 456677 58999999999 89999999963222 112357899999999999999974 357788888877 68999
Q ss_pred EEEEeCccCCCC----------------------------CCcceecCeEEEEECCCCcEEEeccCCCCC-CCceeEEEE
Q 006473 137 LYIFGGEFTSPN----------------------------QERFHHYKDFWMLDLKTNQWEQLNLKGCPS-PRSGHRMVL 187 (643)
Q Consensus 137 iyvfGG~~~~~~----------------------------~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~-~Rs~h~~~~ 187 (643)
|||+||...... ...+..++++++||+.+++|+.+.+ +|. +|.+|++++
T Consensus 121 IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~--~p~~~r~~~~~~~ 198 (346)
T TIGR03547 121 AYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGE--NPFLGTAGSAIVH 198 (346)
T ss_pred EEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECcc--CCCCcCCCceEEE
Confidence 999999753100 0000124789999999999999987 775 789999999
Q ss_pred ECCEEEEEeeeecCCCceeeeccEEEEE--cCCCceEEeccCCCCC--CCCCccceeEEEeCCEEEEEcCCCCCCCCcc-
Q 006473 188 YKHKIIVFGGFYDTLREVRYYNDLYVFD--LDQFKWQEIKPRFGSM--WPSPRSGFQFFVYQDEVFLYGGYSKEVSTDK- 262 (643)
Q Consensus 188 ~~~~lyvfGG~~~~~~~~~~~~dv~~yD--~~t~~W~~v~~~~~~~--~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~- 262 (643)
++++||||||...... ....++.|+ +.+++|+.+++++... .+..|.+|++++++++|||+||+........
T Consensus 199 ~~~~iyv~GG~~~~~~---~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~ 275 (346)
T TIGR03547 199 KGNKLLLINGEIKPGL---RTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENY 275 (346)
T ss_pred ECCEEEEEeeeeCCCc---cchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhh
Confidence 9999999999864321 234566665 4677999999884311 1223457778888999999999863200000
Q ss_pred --CCC--C-CCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEE
Q 006473 263 --NQS--E-KGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQ 337 (643)
Q Consensus 263 --~~~--~-~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd 337 (643)
+.. . ....+..+.+||+.+++|+.+..+ |.+|.++++++++++|||+||.... ...+++|+.|-
T Consensus 276 ~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l---p~~~~~~~~~~~~~~iyv~GG~~~~--------~~~~~~v~~~~ 344 (346)
T TIGR03547 276 KNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKL---PQGLAYGVSVSWNNGVLLIGGENSG--------GKAVTDVYLLS 344 (346)
T ss_pred hcCCccccCCCCceeEeeEEEecCCcccccCCC---CCCceeeEEEEcCCEEEEEeccCCC--------CCEeeeEEEEE
Confidence 000 0 001234688999999999999764 7789999999999999999998652 34578888764
Q ss_pred C
Q 006473 338 L 338 (643)
Q Consensus 338 ~ 338 (643)
+
T Consensus 345 ~ 345 (346)
T TIGR03547 345 W 345 (346)
T ss_pred e
Confidence 3
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=271.97 Aligned_cols=263 Identities=20% Similarity=0.258 Sum_probs=189.3
Q ss_pred ccCCCC-CCCCceEEEEeccCCCEEEEEcceec-C-CCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEE-ECCE
Q 006473 61 DNVPAP-SPRSNCSLNINPLKETELILYGGEFY-N-GNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS-WKNY 136 (643)
Q Consensus 61 ~~~~~P-~~R~~~s~~~~~~~~~~lyvfGG~~~-~-g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~-~~~~ 136 (643)
...++| .+|.+++++++ ++.||||||... . ......++++|+||+.+++|+.++.+ .|.+|.+|++++ .+++
T Consensus 66 ~l~~~p~~~r~~~~~v~~---~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~-~p~~~~~~~~~~~~~~~ 141 (376)
T PRK14131 66 KIAAFPGGPREQAVAAFI---DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTR-SPVGLAGHVAVSLHNGK 141 (376)
T ss_pred ECCcCCCCCcccceEEEE---CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCC-CCCcccceEEEEeeCCE
Confidence 334455 58999999988 899999999632 1 11124678999999999999999753 477788888887 7999
Q ss_pred EEEEeCccCCCC----------------------------CCcceecCeEEEEECCCCcEEEeccCCCCC-CCceeEEEE
Q 006473 137 LYIFGGEFTSPN----------------------------QERFHHYKDFWMLDLKTNQWEQLNLKGCPS-PRSGHRMVL 187 (643)
Q Consensus 137 iyvfGG~~~~~~----------------------------~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~-~Rs~h~~~~ 187 (643)
||||||...... ...+...+++++||+.+++|+.+.+ +|. +|.+|+++.
T Consensus 142 IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~--~p~~~~~~~a~v~ 219 (376)
T PRK14131 142 AYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGE--SPFLGTAGSAVVI 219 (376)
T ss_pred EEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCc--CCCCCCCcceEEE
Confidence 999999753100 0001125789999999999999876 664 788999999
Q ss_pred ECCEEEEEeeeecCCCceeeeccEE--EEEcCCCceEEeccCCCCC---CCCCccceeEEEeCCEEEEEcCCCCCCCCcc
Q 006473 188 YKHKIIVFGGFYDTLREVRYYNDLY--VFDLDQFKWQEIKPRFGSM---WPSPRSGFQFFVYQDEVFLYGGYSKEVSTDK 262 (643)
Q Consensus 188 ~~~~lyvfGG~~~~~~~~~~~~dv~--~yD~~t~~W~~v~~~~~~~---~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~ 262 (643)
++++||||||...... ....+| .||+.+++|..+.++|... .+..+.++.+++++++|||+||.... ...
T Consensus 220 ~~~~iYv~GG~~~~~~---~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~--~~~ 294 (376)
T PRK14131 220 KGNKLWLINGEIKPGL---RTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFP--GAR 294 (376)
T ss_pred ECCEEEEEeeeECCCc---CChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCC--CCh
Confidence 9999999999754321 234555 4567889999999883211 01112334456779999999998643 000
Q ss_pred C-----C--CCCC-ceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEE
Q 006473 263 N-----Q--SEKG-IIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELY 334 (643)
Q Consensus 263 ~-----~--~~~~-~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~ 334 (643)
. . ...+ .....+.+||+.+++|+.+.. .|.+|.++++++++++|||+||.... ....++|+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~---lp~~r~~~~av~~~~~iyv~GG~~~~--------~~~~~~v~ 363 (376)
T PRK14131 295 ENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGE---LPQGLAYGVSVSWNNGVLLIGGETAG--------GKAVSDVT 363 (376)
T ss_pred hhhhcCCcccccCCcceeehheEEecCCcccccCc---CCCCccceEEEEeCCEEEEEcCCCCC--------CcEeeeEE
Confidence 0 0 0000 012346799999999998865 48899999999999999999997542 23578999
Q ss_pred EEECCCCcEEE
Q 006473 335 GFQLDNHRWYP 345 (643)
Q Consensus 335 ~yd~~t~~W~~ 345 (643)
+|++..+.|..
T Consensus 364 ~~~~~~~~~~~ 374 (376)
T PRK14131 364 LLSWDGKKLTV 374 (376)
T ss_pred EEEEcCCEEEE
Confidence 99999887764
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=281.34 Aligned_cols=211 Identities=17% Similarity=0.242 Sum_probs=182.6
Q ss_pred EEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeec
Q 006473 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYN 209 (643)
Q Consensus 130 ~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~ 209 (643)
++..++.||++||.... ...+.+|+||+.+++|..+++ +|.+|..|++++++++||++||... .+
T Consensus 267 ~~~~~~~lyviGG~~~~------~~~~~v~~Ydp~~~~W~~~~~--m~~~r~~~~~v~~~~~iYviGG~~~-------~~ 331 (480)
T PHA02790 267 STHVGEVVYLIGGWMNN------EIHNNAIAVNYISNNWIPIPP--MNSPRLYASGVPANNKLYVVGGLPN-------PT 331 (480)
T ss_pred eEEECCEEEEEcCCCCC------CcCCeEEEEECCCCEEEECCC--CCchhhcceEEEECCEEEEECCcCC-------CC
Confidence 34579999999997532 246889999999999999988 8999999999999999999999743 25
Q ss_pred cEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEecc
Q 006473 210 DLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (643)
Q Consensus 210 dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~ 289 (643)
.+++||+.+++|..++++ |.+|.+|++++++++||++||.... .+.+.+|||.+++|+.+++
T Consensus 332 sve~ydp~~n~W~~~~~l-----~~~r~~~~~~~~~g~IYviGG~~~~-------------~~~ve~ydp~~~~W~~~~~ 393 (480)
T PHA02790 332 SVERWFHGDAAWVNMPSL-----LKPRCNPAVASINNVIYVIGGHSET-------------DTTTEYLLPNHDQWQFGPS 393 (480)
T ss_pred ceEEEECCCCeEEECCCC-----CCCCcccEEEEECCEEEEecCcCCC-------------CccEEEEeCCCCEEEeCCC
Confidence 689999999999999988 8899999999999999999997532 2468899999999999876
Q ss_pred CCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCch
Q 006473 290 IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSS 369 (643)
Q Consensus 290 ~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~ 369 (643)
+ |.+|.+|++++++++|||+||. +.+||+.+++|..++.
T Consensus 394 m---~~~r~~~~~~~~~~~IYv~GG~-----------------~e~ydp~~~~W~~~~~--------------------- 432 (480)
T PHA02790 394 T---YYPHYKSCALVFGRRLFLVGRN-----------------AEFYCESSNTWTLIDD--------------------- 432 (480)
T ss_pred C---CCccccceEEEECCEEEEECCc-----------------eEEecCCCCcEeEcCC---------------------
Confidence 5 7799999999999999999984 4689999999998875
Q ss_pred hhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeecCceeeeecCCCCCCccccccccccCCCCCc
Q 006473 370 ALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIV 449 (643)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (643)
T Consensus 433 -------------------------------------------------------------------------------- 432 (480)
T PHA02790 433 -------------------------------------------------------------------------------- 432 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccceeeecCeEEEecceEeecCeEEeecceeccccCCccceEEe
Q 006473 450 KPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCI 499 (643)
Q Consensus 450 ~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~tl~D~~~ldl~k~d~w~~i 499 (643)
||.||.+++++++++.|||+||... . ..++.+..||+.+ |.|+-.
T Consensus 433 m~~~r~~~~~~v~~~~IYviGG~~~--~--~~~~~ve~Yd~~~-~~W~~~ 477 (480)
T PHA02790 433 PIYPRDNPELIIVDNKLLLIGGFYR--G--SYIDTIEVYNNRT-YSWNIW 477 (480)
T ss_pred CCCCccccEEEEECCEEEEECCcCC--C--cccceEEEEECCC-CeEEec
Confidence 7999999999999999999999752 1 1367899999998 999754
|
|
| >KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-30 Score=265.20 Aligned_cols=216 Identities=27% Similarity=0.574 Sum_probs=184.9
Q ss_pred CcEEEec--CCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCC-CCCCceeEEEE
Q 006473 111 QEWKVIS--SPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVL 187 (643)
Q Consensus 111 ~~W~~l~--s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~-P~~Rs~h~~~~ 187 (643)
-.|+.+. .++.|.||.+|.++++..-|+||||-+.. ....+..||..+++|......|. |.+...|+.++
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEG-------iiDELHvYNTatnqWf~PavrGDiPpgcAA~Gfvc 89 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEG-------IIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVC 89 (830)
T ss_pred cceEEEecccCCCCCccccchheeeeeeEEEecCCccc-------chhhhhhhccccceeecchhcCCCCCchhhcceEe
Confidence 3688775 34568889999999999999999997543 46789999999999998776664 88888999999
Q ss_pred ECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCC--CCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCC
Q 006473 188 YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF--GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265 (643)
Q Consensus 188 ~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~--~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~ 265 (643)
.+.+||+|||+...+ +|.|++|.+......|.++.+.+ .+.+|.||.||++.+++++.|||||.... .+...+
T Consensus 90 dGtrilvFGGMvEYG---kYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNd--seDpkn 164 (830)
T KOG4152|consen 90 DGTRILVFGGMVEYG---KYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLAND--SEDPKN 164 (830)
T ss_pred cCceEEEEccEeeec---cccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEecccccc--ccCccc
Confidence 999999999997754 48999999888888899886653 46789999999999999999999998776 444556
Q ss_pred CCCceeeeEEEEeCC----CCeeEEeccCCCCCCCceeeEEEEE------CCeEEEeccccccccCccccccccCCcEEE
Q 006473 266 EKGIIHSDLWSLDPR----TWEWSKVKKIGMPPGPRAGFSMCVH------KKRALLFGGVVDMEMKGDVIMSLFLNELYG 335 (643)
Q Consensus 266 ~~~~~~~dv~~yd~~----t~~W~~l~~~g~~P~~R~g~s~~~~------~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~ 335 (643)
....+++|+|++++. -..|......|..|.+|-.|+++++ ..++|||||.++ +-+.|||.
T Consensus 165 NvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G----------~RLgDLW~ 234 (830)
T KOG4152|consen 165 NVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG----------CRLGDLWT 234 (830)
T ss_pred ccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc----------ccccceeE
Confidence 677899999999976 3479999888999999999999998 358999999875 55899999
Q ss_pred EECCCCcEEEeEe
Q 006473 336 FQLDNHRWYPLEL 348 (643)
Q Consensus 336 yd~~t~~W~~l~~ 348 (643)
+|+++..|.+...
T Consensus 235 Ldl~Tl~W~kp~~ 247 (830)
T KOG4152|consen 235 LDLDTLTWNKPSL 247 (830)
T ss_pred Eecceeecccccc
Confidence 9999999988877
|
|
| >KOG2437 consensus Muskelin [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.6e-22 Score=205.08 Aligned_cols=264 Identities=22% Similarity=0.360 Sum_probs=191.4
Q ss_pred CCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCC-CCCCceeeEEEEEC--CEEEEE
Q 006473 64 PAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN-SPPPRSAHQAVSWK--NYLYIF 140 (643)
Q Consensus 64 ~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~-~P~pRs~ha~~~~~--~~iyvf 140 (643)
.-|..|.||.++..+. .+.||++|| ++|.. .+.|+|.|+...+.|..+.... .|..|+.|-+|..- .+||+.
T Consensus 256 ~~p~~RgGHQMV~~~~-~~CiYLYGG--WdG~~--~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLl 330 (723)
T KOG2437|consen 256 NRPGMRGGHQMVIDVQ-TECVYLYGG--WDGTQ--DLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLL 330 (723)
T ss_pred cCccccCcceEEEeCC-CcEEEEecC--cccch--hHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhh
Confidence 5789999999999864 479999999 67754 5789999999999999887554 78999999999984 489999
Q ss_pred eCccCCCCCCcceecCeEEEEECCCCcEEEeccC----CCCCCCceeEEEEECCE--EEEEeeeecCCCceeeeccEEEE
Q 006473 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK----GCPSPRSGHRMVLYKHK--IIVFGGFYDTLREVRYYNDLYVF 214 (643)
Q Consensus 141 GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~----g~P~~Rs~h~~~~~~~~--lyvfGG~~~~~~~~~~~~dv~~y 214 (643)
|-+..+.....+..-.|+|+||..++.|..+... |.|...+.|.|++...+ ||||||..-... ...+..+|.|
T Consensus 331 G~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~-e~~f~GLYaf 409 (723)
T KOG2437|consen 331 GRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCN-EPQFSGLYAF 409 (723)
T ss_pred hhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCC-CccccceEEE
Confidence 9988776666666778999999999999987542 34999999999999776 999999865432 2357789999
Q ss_pred EcCCCceEEeccCCCC-----CCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEe
Q 006473 215 DLDQFKWQEIKPRFGS-----MWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (643)
Q Consensus 215 D~~t~~W~~v~~~~~~-----~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l 287 (643)
|+....|..+...-.. .....|.||+|-.+ +..+|++||.... .-++-.+.|++....-..+
T Consensus 410 ~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~-----------~El~L~f~y~I~~E~~~~~ 478 (723)
T KOG2437|consen 410 NCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSK-----------TELNLFFSYDIDSEHVDII 478 (723)
T ss_pred ecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccc-----------eEEeehhcceeccccchhh
Confidence 9999999886543111 11346888988776 8899999998765 4556667776543332222
Q ss_pred cc-----CCCCCCCceeeEEEEE---CCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 288 KK-----IGMPPGPRAGFSMCVH---KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 288 ~~-----~g~~P~~R~g~s~~~~---~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
.. ....|++-+ ..-+.. ..+|.+.-|........ .....|.+|+|++.++.|..+..
T Consensus 479 s~~~k~dsS~~pS~~f-~qRs~~dp~~~~i~~~~G~~~~~~~~---e~~~rns~wi~~i~~~~w~cI~~ 543 (723)
T KOG2437|consen 479 SDGTKKDSSMVPSTGF-TQRATIDPELNEIHVLSGLSKDKEKR---EENVRNSFWIYDIVRNSWSCIYK 543 (723)
T ss_pred hccCcCccccCCCcch-hhhcccCCCCcchhhhcccchhccCc---cccccCcEEEEEecccchhhHhh
Confidence 11 111232211 111222 45676666654322211 13457899999999999987764
|
|
| >COG3055 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.5e-17 Score=167.32 Aligned_cols=258 Identities=20% Similarity=0.283 Sum_probs=188.4
Q ss_pred ccCCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCC--cEEEecCCCCCCCceeeEEEEECCEEE
Q 006473 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSPPPRSAHQAVSWKNYLY 138 (643)
Q Consensus 61 ~~~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~~P~pRs~ha~~~~~~~iy 138 (643)
..+..|.+--+.+-..+ ++.+||-=|. . -+..|..|+... .|+.++.-+ -.+|.+..+++++++||
T Consensus 29 ~lPdlPvg~KnG~Ga~i---g~~~YVGLGs--~------G~afy~ldL~~~~k~W~~~a~Fp-G~~rnqa~~a~~~~kLy 96 (381)
T COG3055 29 QLPDLPVGFKNGAGALI---GDTVYVGLGS--A------GTAFYVLDLKKPGKGWTKIADFP-GGARNQAVAAVIGGKLY 96 (381)
T ss_pred cCCCCCcccccccccee---cceEEEEecc--C------CccceehhhhcCCCCceEcccCC-CcccccchheeeCCeEE
Confidence 44567777666666666 6789986662 1 246788888764 799998653 36799999999999999
Q ss_pred EEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECC-EEEEEeeeecC----------------
Q 006473 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH-KIIVFGGFYDT---------------- 201 (643)
Q Consensus 139 vfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~-~lyvfGG~~~~---------------- 201 (643)
||||...+.. .....++++|+||+.+++|.++.+. .|....+|.++.+++ .||++||++..
T Consensus 97 vFgG~Gk~~~-~~~~~~nd~Y~y~p~~nsW~kl~t~-sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~ 174 (381)
T COG3055 97 VFGGYGKSVS-SSPQVFNDAYRYDPSTNSWHKLDTR-SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDK 174 (381)
T ss_pred EeeccccCCC-CCceEeeeeEEecCCCChhheeccc-cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccH
Confidence 9999865544 2346899999999999999999874 388888999999987 99999997521
Q ss_pred --------------CCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCC
Q 006473 202 --------------LREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEK 267 (643)
Q Consensus 202 --------------~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~ 267 (643)
.....+...|+.|+|++++|+.+...| -.++++.+++.-++.|.++-|.-..
T Consensus 175 ~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~p----f~~~aGsa~~~~~n~~~lInGEiKp---------- 240 (381)
T COG3055 175 EAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENP----FYGNAGSAVVIKGNKLTLINGEIKP---------- 240 (381)
T ss_pred HHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCc----ccCccCcceeecCCeEEEEcceecC----------
Confidence 111335678999999999999998652 4678886666668889999998765
Q ss_pred CceeeeEEEEeC--CCCeeEEeccCCCCCC----CceeeEEEEECCeEEEeccccccccC----------ccccccccCC
Q 006473 268 GIIHSDLWSLDP--RTWEWSKVKKIGMPPG----PRAGFSMCVHKKRALLFGGVVDMEMK----------GDVIMSLFLN 331 (643)
Q Consensus 268 ~~~~~dv~~yd~--~t~~W~~l~~~g~~P~----~R~g~s~~~~~~~iyvfGG~~~~~~~----------~~~~~~~~~n 331 (643)
+.....+++++. ...+|.++.....++. ..+|+-.-..++.+++.||.+-.+.. .+.+.-.+.+
T Consensus 241 GLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~ 320 (381)
T COG3055 241 GLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNS 320 (381)
T ss_pred CccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhc
Confidence 455566777775 4568999976532221 22333334457889999987644322 2235556778
Q ss_pred cEEEEECCCCcEEEeEe
Q 006473 332 ELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 332 dl~~yd~~t~~W~~l~~ 348 (643)
+||+|| ++.|..+..
T Consensus 321 ~Vy~~d--~g~Wk~~Ge 335 (381)
T COG3055 321 EVYIFD--NGSWKIVGE 335 (381)
T ss_pred eEEEEc--CCceeeecc
Confidence 899999 889988775
|
|
| >PF13422 DUF4110: Domain of unknown function (DUF4110) | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-19 Score=151.46 Aligned_cols=53 Identities=43% Similarity=0.524 Sum_probs=49.8
Q ss_pred hcCCCCCCCCCCCCCcHHHHHHhhHHHHHHHHhhccc--ccchhhhhhhcccccc
Q 006473 588 NLGLSDSQRTPMPGESLKDFYRRTSMYWQMAAHEHTQ--HTGKVCFHFSFLTFSE 640 (643)
Q Consensus 588 ~~~~~d~~~~p~p~e~~~~f~~rt~~~w~~~~~~~~~--~~~k~~~~~~f~~~~~ 640 (643)
+++++|++|||+||||||+||+||++|||++|+++.+ ++||||||+||.+.++
T Consensus 2 ~~~~~d~~ptP~p~EsLr~Ff~RT~~~W~~~a~~~~~~~~~~KeLrk~aF~lAe~ 56 (96)
T PF13422_consen 2 QPDLDDWLPTPKPFESLRDFFARTSEYWQEWAIESNRDAHRGKELRKDAFDLAEE 56 (96)
T ss_pred CCCCccCCCCCCCCCcHHHHHHHhHHHHHHHHHHccccccchHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999988 7899999999998654
|
|
| >COG3055 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-14 Score=148.03 Aligned_cols=255 Identities=20% Similarity=0.273 Sum_probs=178.7
Q ss_pred CCCCCCceEEEEeccCCCEEEEEcceecCC-CCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECC-EEEEEeC
Q 006473 65 APSPRSNCSLNINPLKETELILYGGEFYNG-NKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKN-YLYIFGG 142 (643)
Q Consensus 65 ~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g-~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~-~iyvfGG 142 (643)
|-.+|.+...+++ +++||+|||..... .....++++|+|||.+++|.++... .|....+|+++.+++ .||++||
T Consensus 79 pG~~rnqa~~a~~---~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~-sP~gl~G~~~~~~~~~~i~f~GG 154 (381)
T COG3055 79 PGGARNQAVAAVI---GGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTR-SPTGLVGASTFSLNGTKIYFFGG 154 (381)
T ss_pred CCcccccchheee---CCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccc-cccccccceeEecCCceEEEEcc
Confidence 4468899999998 89999999974333 2356899999999999999999765 467788999999976 9999999
Q ss_pred ccCCC----------------------------CCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEE
Q 006473 143 EFTSP----------------------------NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIV 194 (643)
Q Consensus 143 ~~~~~----------------------------~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyv 194 (643)
.+... ....+.....|+.|++.++.|+.+...+ -.++++++.+.-+|+|.+
T Consensus 155 vn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~p-f~~~aGsa~~~~~n~~~l 233 (381)
T COG3055 155 VNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENP-FYGNAGSAVVIKGNKLTL 233 (381)
T ss_pred ccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCc-ccCccCcceeecCCeEEE
Confidence 63220 1112345778999999999999886422 456777666656888999
Q ss_pred EeeeecCCCceeeeccEEEEEcC--CCceEEeccCCCCCC--CCCccceeEEEeCCEEEEEcCCCCCCCC--------cc
Q 006473 195 FGGFYDTLREVRYYNDLYVFDLD--QFKWQEIKPRFGSMW--PSPRSGFQFFVYQDEVFLYGGYSKEVST--------DK 262 (643)
Q Consensus 195 fGG~~~~~~~~~~~~dv~~yD~~--t~~W~~v~~~~~~~~--P~~R~~~s~~~~~~~iyv~GG~~~~~~~--------~~ 262 (643)
+-|.-..+- ....+++++.. .-+|..+...|.... +....|+-.-..++.++|.||....-.. -.
T Consensus 234 InGEiKpGL---Rt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~A 310 (381)
T COG3055 234 INGEIKPGL---RTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYA 310 (381)
T ss_pred EcceecCCc---cccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhccccc
Confidence 988754432 25566777665 567999877643111 1333344444458899999997543000 01
Q ss_pred CCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCC
Q 006473 263 NQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (643)
Q Consensus 263 ~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (643)
.....-..+++||+|| .+.|..+.. .|.++++...+..++.+|++||.+... .....++.+-+..
T Consensus 311 H~Gl~K~w~~~Vy~~d--~g~Wk~~Ge---Lp~~l~YG~s~~~nn~vl~IGGE~~~G--------ka~~~v~~l~~~g 375 (381)
T COG3055 311 HEGLSKSWNSEVYIFD--NGSWKIVGE---LPQGLAYGVSLSYNNKVLLIGGETSGG--------KATTRVYSLSWDG 375 (381)
T ss_pred ccchhhhhhceEEEEc--CCceeeecc---cCCCccceEEEecCCcEEEEccccCCC--------eeeeeEEEEEEcC
Confidence 1223345788999999 899999854 577888888888899999999987643 3345555554443
|
|
| >KOG2437 consensus Muskelin [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.8e-16 Score=163.34 Aligned_cols=167 Identities=23% Similarity=0.468 Sum_probs=131.4
Q ss_pred CCcEEEeccCC--------CCCCCceeEEEEECC--EEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCC
Q 006473 165 TNQWEQLNLKG--------CPSPRSGHRMVLYKH--KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (643)
Q Consensus 165 t~~W~~~~~~g--------~P~~Rs~h~~~~~~~--~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (643)
+-.|++++... .|.-|+||.|+...+ +||++||+++.. -+.|+|.|....+.|+.+..- +..|-
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~----~l~DFW~Y~v~e~~W~~iN~~--t~~PG 311 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQ----DLADFWAYSVKENQWTCINRD--TEGPG 311 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccch----hHHHHHhhcCCcceeEEeecC--CCCCc
Confidence 45798887644 289999999999854 999999998754 389999999999999999766 44699
Q ss_pred CccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCC---CCCCCceeeEEEEECCe-
Q 006473 235 PRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG---MPPGPRAGFSMCVHKKR- 308 (643)
Q Consensus 235 ~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g---~~P~~R~g~s~~~~~~~- 308 (643)
.|+.|-|++. ..++|+.|-|-.. +.. .......|+|+||+.++.|..+.-.. --|...+-|.|++.+.+
T Consensus 312 ~RsCHRMVid~S~~KLYLlG~Y~~s--S~r---~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~ 386 (723)
T KOG2437|consen 312 ARSCHRMVIDISRRKLYLLGRYLDS--SVR---NSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKH 386 (723)
T ss_pred chhhhhhhhhhhHhHHhhhhhcccc--ccc---cccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcc
Confidence 9999999998 4599999988654 111 11245679999999999999985321 13677889999999766
Q ss_pred -EEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 309 -ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 309 -iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
||||||+.-... ...+.-||+||+....|..+..
T Consensus 387 ~iyVfGGr~~~~~------e~~f~GLYaf~~~~~~w~~l~e 421 (723)
T KOG2437|consen 387 MIYVFGGRILTCN------EPQFSGLYAFNCQCQTWKLLRE 421 (723)
T ss_pred eEEEecCeeccCC------CccccceEEEecCCccHHHHHH
Confidence 999999864321 2346789999999999987765
|
|
| >PF13964 Kelch_6: Kelch motif | Back alignment and domain information |
|---|
Probab=98.98 E-value=1e-09 Score=82.90 Aligned_cols=50 Identities=42% Similarity=0.591 Sum_probs=44.5
Q ss_pred CceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCC
Q 006473 124 PRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (643)
Q Consensus 124 pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (643)
||.+|++|+++++||||||.... ...++++|+||+.+++|+.+++ +|.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~-----~~~~~~v~~yd~~t~~W~~~~~--mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS-----GKYSNDVERYDPETNTWEQLPP--MPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC-----CCccccEEEEcCCCCcEEECCC--CCCCC
Confidence 69999999999999999998764 2357999999999999999987 88877
|
|
| >PF13964 Kelch_6: Kelch motif | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.3e-09 Score=82.37 Aligned_cols=50 Identities=40% Similarity=0.833 Sum_probs=44.6
Q ss_pred CCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCc
Q 006473 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR 236 (643)
Q Consensus 179 ~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R 236 (643)
||.+|++++++++||||||.... ..+++++++||+.+++|++++++ |.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~---~~~~~~v~~yd~~t~~W~~~~~m-----p~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS---GKYSNDVERYDPETNTWEQLPPM-----PTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC---CCccccEEEEcCCCCcEEECCCC-----CCCC
Confidence 68999999999999999998764 34789999999999999999988 6665
|
|
| >PF13415 Kelch_3: Galactose oxidase, central domain | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.8e-09 Score=77.13 Aligned_cols=49 Identities=39% Similarity=0.786 Sum_probs=41.4
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY 188 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~ 188 (643)
+++||||||...... ..++++|+||+.+++|+++.. +|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~~----~~~nd~~~~~~~~~~W~~~~~--~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGG----TRLNDVWVFDLDTNTWTRIGD--LPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCC----CEecCEEEEECCCCEEEECCC--CCCCccceEEEEC
Confidence 578999999874222 368999999999999999955 7999999999874
|
|
| >PF13415 Kelch_3: Galactose oxidase, central domain | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.4e-08 Score=76.35 Aligned_cols=49 Identities=29% Similarity=0.579 Sum_probs=41.0
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW 133 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~ 133 (643)
+++||||||... .....+|++|+||+.+++|+++ +..|.||++|+++++
T Consensus 1 g~~~~vfGG~~~--~~~~~~nd~~~~~~~~~~W~~~--~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDD--DGGTRLNDVWVFDLDTNTWTRI--GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCC--CCCCEecCEEEEECCCCEEEEC--CCCCCCccceEEEEC
Confidence 478999999642 3345889999999999999999 457899999999874
|
|
| >PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.5e-07 Score=88.39 Aligned_cols=187 Identities=19% Similarity=0.231 Sum_probs=117.1
Q ss_pred ccCCCCCCCCceEEEE-eccCC--CEEEEEcceecCCCCceeeccEEEEECCCCc-EEEec--------CCCCCCCceee
Q 006473 61 DNVPAPSPRSNCSLNI-NPLKE--TELILYGGEFYNGNKTYVYGDLYRYDVEKQE-WKVIS--------SPNSPPPRSAH 128 (643)
Q Consensus 61 ~~~~~P~~R~~~s~~~-~~~~~--~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~-W~~l~--------s~~~P~pRs~h 128 (643)
..+-.|+.|..+.+.+ .|..+ ...+|.||...|+. ..+.+|+....... =++++ .+..|.+|++|
T Consensus 15 dSCYLPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNE---lS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGH 91 (337)
T PF03089_consen 15 DSCYLPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNE---LSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGH 91 (337)
T ss_pred CcccCCCCCCccEeeecCCCCCCeeeEEecCCcCCCcc---cccceEEEEeecCCCCceeEEEEecceecCCCCcccccc
Confidence 3456788887766665 33222 34667788766654 67889988877653 11111 35679999999
Q ss_pred EEEEE----CCEEEEEeCccCCCCCC--------cceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEe
Q 006473 129 QAVSW----KNYLYIFGGEFTSPNQE--------RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFG 196 (643)
Q Consensus 129 a~~~~----~~~iyvfGG~~~~~~~~--------~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfG 196 (643)
++.++ ...+++|||...-+... ...+...|+.+|+.-+.++.-..+.+....+.|.+..-++.+|++|
T Consensus 92 t~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilG 171 (337)
T PF03089_consen 92 TINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILG 171 (337)
T ss_pred eEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEc
Confidence 99888 34689999975332211 1234557899999988887665544567888999999999999999
Q ss_pred eeecCCCceeeeccEEEEEcC---CCceEEeccCCCCCCCCCccceeEEEe---CCEEEEEcCCCCC
Q 006473 197 GFYDTLREVRYYNDLYVFDLD---QFKWQEIKPRFGSMWPSPRSGFQFFVY---QDEVFLYGGYSKE 257 (643)
Q Consensus 197 G~~~~~~~~~~~~dv~~yD~~---t~~W~~v~~~~~~~~P~~R~~~s~~~~---~~~iyv~GG~~~~ 257 (643)
|..-... .....++++... -.-+-..... +...+-.++.+. .+..+|+|||...
T Consensus 172 GHsl~sd--~Rpp~l~rlkVdLllGSP~vsC~vl-----~~glSisSAIvt~~~~~e~iIlGGY~sd 231 (337)
T PF03089_consen 172 GHSLESD--SRPPRLYRLKVDLLLGSPAVSCTVL-----QGGLSISSAIVTQTGPHEYIILGGYQSD 231 (337)
T ss_pred cEEccCC--CCCCcEEEEEEeecCCCceeEEEEC-----CCCceEeeeeEeecCCCceEEEeccccc
Confidence 9864322 123445555322 1112222222 223333333332 6789999999876
|
V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus |
| >PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.2e-08 Score=73.46 Aligned_cols=46 Identities=37% Similarity=0.673 Sum_probs=41.3
Q ss_pred CCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccC
Q 006473 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (643)
Q Consensus 179 ~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (643)
||++|++++++++||||||+... ..+++++++||+.+++|+.++++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~---~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGN---NQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBEST---SSBEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeeccc---CceeeeEEEEeCCCCEEEEcCCC
Confidence 69999999999999999999873 34799999999999999999887
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A .... |
| >PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.5e-08 Score=74.08 Aligned_cols=48 Identities=42% Similarity=0.752 Sum_probs=41.2
Q ss_pred CCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccC
Q 006473 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (643)
Q Consensus 179 ~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (643)
||++|++++++++||||||+ .......+.+++++||+.+++|+.++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~-~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGY-GTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCc-ccCCCCcccceeEEEECCCCEEeecCCC
Confidence 69999999999999999999 1222345799999999999999999876
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding |
| >PLN02772 guanylate kinase | Back alignment and domain information |
|---|
Probab=98.68 E-value=1e-07 Score=101.40 Aligned_cols=88 Identities=20% Similarity=0.319 Sum_probs=75.8
Q ss_pred CCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEE
Q 006473 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALL 311 (643)
Q Consensus 233 P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyv 311 (643)
+.++.+++++.+++++||+||.+.. +...+.+|+||+.+.+|......|.+|.+|.||++|++ +++|+|
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~----------~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv 91 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEG----------NTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILV 91 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCC----------ccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEE
Confidence 5688999999999999999997765 34678999999999999999999999999999999999 699999
Q ss_pred eccccccccCccccccccCCcEEEEECCCC
Q 006473 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (643)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (643)
+++.... -.++|.+.+.|-
T Consensus 92 ~~~~~~~-----------~~~~w~l~~~t~ 110 (398)
T PLN02772 92 IKKGSAP-----------DDSIWFLEVDTP 110 (398)
T ss_pred EeCCCCC-----------ccceEEEEcCCH
Confidence 9987542 356888877663
|
|
| >PLN02772 guanylate kinase | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.3e-08 Score=101.68 Aligned_cols=88 Identities=19% Similarity=0.265 Sum_probs=75.6
Q ss_pred CCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCC
Q 006473 177 PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYS 255 (643)
Q Consensus 177 P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~ 255 (643)
+.++.+|+++.+++++|||||.++.. ...+.||+||+.+.+|..+... +..|.||.||+++++ +++|+|+++.+
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~---~~~~~v~i~D~~t~~W~~P~V~--G~~P~~r~GhSa~v~~~~rilv~~~~~ 96 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGN---TLSIGVQILDKITNNWVSPIVL--GTGPKPCKGYSAVVLNKDRILVIKKGS 96 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCc---cccceEEEEECCCCcEeccccc--CCCCCCCCcceEEEECCceEEEEeCCC
Confidence 56889999999999999999987743 2579999999999999998877 778999999999999 78999999876
Q ss_pred CCCCCccCCCCCCceeeeEEEEeCCCC
Q 006473 256 KEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (643)
Q Consensus 256 ~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (643)
.. .+++|++.+.|.
T Consensus 97 ~~-------------~~~~w~l~~~t~ 110 (398)
T PLN02772 97 AP-------------DDSIWFLEVDTP 110 (398)
T ss_pred CC-------------ccceEEEEcCCH
Confidence 43 378999987664
|
|
| >PF13854 Kelch_5: Kelch motif | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.6e-08 Score=73.35 Aligned_cols=41 Identities=29% Similarity=0.559 Sum_probs=35.5
Q ss_pred CCccccccceeeecCeEEEecceEeecCeEEeecceeccccCC
Q 006473 450 KPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSK 492 (643)
Q Consensus 450 ~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~tl~D~~~ldl~k 492 (643)
+|.||.+|++++.++.||||||... .....++|||.|||.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~--~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSG--NNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccC--CCCCEECcEEEEECCC
Confidence 4999999999999999999999974 3345699999999975
|
|
| >PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.5e-08 Score=73.47 Aligned_cols=46 Identities=35% Similarity=0.646 Sum_probs=31.4
Q ss_pred CCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccC
Q 006473 179 PRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (643)
Q Consensus 179 ~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (643)
||++|+++.+ +++||||||..... .+++++|+||+.+++|++++++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~---~~~~d~~~~d~~~~~W~~~~~~ 47 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSG---SPLNDLWIFDIETNTWTRLPSM 47 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-T---EE---EEEEETTTTEEEE--SS
T ss_pred CcceEEEEEEeCCeEEEECCCCCCC---cccCCEEEEECCCCEEEECCCC
Confidence 6999999999 58999999998753 4799999999999999999665
|
|
| >PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.7e-08 Score=72.17 Aligned_cols=46 Identities=26% Similarity=0.517 Sum_probs=30.1
Q ss_pred CCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecC
Q 006473 68 PRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISS 118 (643)
Q Consensus 68 ~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s 118 (643)
||.+|+++.+. ++.||||||...++ ..++++|+||+.+++|+++++
T Consensus 1 pR~~h~~~~~~--~~~i~v~GG~~~~~---~~~~d~~~~d~~~~~W~~~~~ 46 (49)
T PF13418_consen 1 PRYGHSAVSIG--DNSIYVFGGRDSSG---SPLNDLWIFDIETNTWTRLPS 46 (49)
T ss_dssp --BS-EEEEE---TTEEEEE--EEE-T---EE---EEEEETTTTEEEE--S
T ss_pred CcceEEEEEEe--CCeEEEECCCCCCC---cccCCEEEEECCCCEEEECCC
Confidence 79999999985 58999999986554 489999999999999999944
|
|
| >PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.7e-08 Score=71.39 Aligned_cols=45 Identities=36% Similarity=0.522 Sum_probs=39.7
Q ss_pred CceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEecc
Q 006473 124 PRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL 173 (643)
Q Consensus 124 pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~ 173 (643)
||++|+++++++.|||+||..... ..++++++||+.+++|+.+++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~-----~~~~~v~~yd~~~~~W~~~~~ 45 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNN-----QPTNSVEVYDPETNTWEELPP 45 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTS-----SBEEEEEEEETTTTEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccC-----ceeeeEEEEeCCCCEEEEcCC
Confidence 699999999999999999998722 368999999999999999876
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A .... |
| >PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.7e-07 Score=70.39 Aligned_cols=47 Identities=28% Similarity=0.782 Sum_probs=40.6
Q ss_pred CccceeEEEeCCEEEEEcCC-CCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccC
Q 006473 235 PRSGFQFFVYQDEVFLYGGY-SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI 290 (643)
Q Consensus 235 ~R~~~s~~~~~~~iyv~GG~-~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~ 290 (643)
||++|++++++++||||||+ ... .....+++++||+.+++|+.++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~---------~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDN---------GGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcccCC---------CCcccceeEEEECCCCEEeecCCC
Confidence 68999999999999999999 111 247889999999999999999865
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding |
| >PF13854 Kelch_5: Kelch motif | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.9e-07 Score=67.72 Aligned_cols=41 Identities=49% Similarity=0.913 Sum_probs=35.7
Q ss_pred CCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCC
Q 006473 177 PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (643)
Q Consensus 177 P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~ 219 (643)
|.+|++|++++++++||||||+.. ....+++++|+||+.++
T Consensus 2 P~~R~~hs~~~~~~~iyi~GG~~~--~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 2 PSPRYGHSAVVVGNNIYIFGGYSG--NNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCccceEEEEECCEEEEEcCccC--CCCCEECcEEEEECCCC
Confidence 889999999999999999999974 23457999999999764
|
|
| >PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.5e-06 Score=84.05 Aligned_cols=129 Identities=20% Similarity=0.268 Sum_probs=81.4
Q ss_pred CCCCceeeEEEEE---C---CEEEEEeCccCCCCCCcceecCeEEEEECCCCc--------EEEeccCC-CCCCCceeEE
Q 006473 121 SPPPRSAHQAVSW---K---NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--------WEQLNLKG-CPSPRSGHRM 185 (643)
Q Consensus 121 ~P~pRs~ha~~~~---~---~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~--------W~~~~~~g-~P~~Rs~h~~ 185 (643)
+|+.|+-..+..- + ...+|.||...+.. ..+.+|++...+.. +.....-| .|.+|+||++
T Consensus 19 LPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNE-----lS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~ 93 (337)
T PF03089_consen 19 LPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNE-----LSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTI 93 (337)
T ss_pred CCCCCCccEeeecCCCCCCeeeEEecCCcCCCcc-----cccceEEEEeecCCCCceeEEEEecceecCCCCcccccceE
Confidence 4566654433331 1 24667788765533 46778888766543 22222212 4999999999
Q ss_pred EEE----CCEEEEEeeeecCCCc---e-------eeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEE
Q 006473 186 VLY----KHKIIVFGGFYDTLRE---V-------RYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLY 251 (643)
Q Consensus 186 ~~~----~~~lyvfGG~~~~~~~---~-------~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~ 251 (643)
.++ +..+++|||....... + .....|+.+|++-+..+.-..+ .+-.+.+.|.++.-++.+|++
T Consensus 94 ~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lp---El~dG~SFHvslar~D~VYil 170 (337)
T PF03089_consen 94 NVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLP---ELQDGQSFHVSLARNDCVYIL 170 (337)
T ss_pred EEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccch---hhcCCeEEEEEEecCceEEEE
Confidence 887 4468999997532211 1 1345788889887776554433 124567777777779999999
Q ss_pred cCCCCC
Q 006473 252 GGYSKE 257 (643)
Q Consensus 252 GG~~~~ 257 (643)
||..-.
T Consensus 171 GGHsl~ 176 (337)
T PF03089_consen 171 GGHSLE 176 (337)
T ss_pred ccEEcc
Confidence 998754
|
V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus |
| >TIGR01640 F_box_assoc_1 F-box protein interaction domain | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00025 Score=71.29 Aligned_cols=204 Identities=15% Similarity=0.224 Sum_probs=116.6
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceee--EEEEEC----C-EEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEecc
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAH--QAVSWK----N-YLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL 173 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~h--a~~~~~----~-~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~ 173 (643)
..++++||.+++|+.++.+..|...... ....++ . +|+.+...... .....+.+|+..+++|+.+..
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~------~~~~~~~Vys~~~~~Wr~~~~ 87 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN------RNQSEHQVYTLGSNSWRTIEC 87 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC------CCCccEEEEEeCCCCcccccc
Confidence 4689999999999999764322111111 111111 1 34444332110 012468899999999999874
Q ss_pred CCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEE-eccCCCCCCCCCccceeEEEeCCEEEEEc
Q 006473 174 KGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE-IKPRFGSMWPSPRSGFQFFVYQDEVFLYG 252 (643)
Q Consensus 174 ~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~-v~~~~~~~~P~~R~~~s~~~~~~~iyv~G 252 (643)
.. +........+++++.||-+.-..... ....+..||+.+.+|.. ++.+.. . ........++.++++|.++.
T Consensus 88 ~~-~~~~~~~~~v~~~G~lyw~~~~~~~~----~~~~IvsFDl~~E~f~~~i~~P~~-~-~~~~~~~~L~~~~G~L~~v~ 160 (230)
T TIGR01640 88 SP-PHHPLKSRGVCINGVLYYLAYTLKTN----PDYFIVSFDVSSERFKEFIPLPCG-N-SDSVDYLSLINYKGKLAVLK 160 (230)
T ss_pred CC-CCccccCCeEEECCEEEEEEEECCCC----CcEEEEEEEcccceEeeeeecCcc-c-cccccceEEEEECCEEEEEE
Confidence 22 22122223778899999887542211 11269999999999995 554311 0 11122345666789988876
Q ss_pred CCCCCCCCccCCCCCCceeeeEEEEe-CCCCeeEEeccCCCCCCCcee----eEEEEECCeEEEeccccccccCcccccc
Q 006473 253 GYSKEVSTDKNQSEKGIIHSDLWSLD-PRTWEWSKVKKIGMPPGPRAG----FSMCVHKKRALLFGGVVDMEMKGDVIMS 327 (643)
Q Consensus 253 G~~~~~~~~~~~~~~~~~~~dv~~yd-~~t~~W~~l~~~g~~P~~R~g----~s~~~~~~~iyvfGG~~~~~~~~~~~~~ 327 (643)
..... ..-++|+++ -....|+++-....++.++.. ...+..++.|++..+...
T Consensus 161 ~~~~~------------~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~---------- 218 (230)
T TIGR01640 161 QKKDT------------NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDEN---------- 218 (230)
T ss_pred ecCCC------------CcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCC----------
Confidence 54321 114699986 445679987544322222221 344556788888765210
Q ss_pred ccCCcEEEEECCCC
Q 006473 328 LFLNELYGFQLDNH 341 (643)
Q Consensus 328 ~~~ndl~~yd~~t~ 341 (643)
..-+..||+.++
T Consensus 219 --~~~~~~y~~~~~ 230 (230)
T TIGR01640 219 --PFYIFYYNVGEN 230 (230)
T ss_pred --ceEEEEEeccCC
Confidence 113889998875
|
This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. |
| >smart00612 Kelch Kelch domain | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.9e-06 Score=62.38 Aligned_cols=47 Identities=32% Similarity=0.579 Sum_probs=39.7
Q ss_pred EEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECC
Q 006473 136 YLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH 190 (643)
Q Consensus 136 ~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~ 190 (643)
+|||+||.... ..++++++||+.+++|+.+++ +|.+|.+|+++++++
T Consensus 1 ~iyv~GG~~~~------~~~~~v~~yd~~~~~W~~~~~--~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG------QRLKSVEVYDPETNKWTPLPS--MPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC------ceeeeEEEECCCCCeEccCCC--CCCccccceEEEeCC
Confidence 48999998542 247899999999999999887 899999999988764
|
|
| >smart00612 Kelch Kelch domain | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.4e-06 Score=61.99 Aligned_cols=47 Identities=23% Similarity=0.564 Sum_probs=39.6
Q ss_pred EEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECC
Q 006473 247 EVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKK 307 (643)
Q Consensus 247 ~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~ 307 (643)
+|||+||+... ..++++++||+.+++|+.+..+ |.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~-----------~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-----------QRLKSVEVYDPETNKWTPLPSM---PTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-----------ceeeeEEEECCCCCeEccCCCC---CCccccceEEEeCC
Confidence 48999998653 5688999999999999998764 78999999988764
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00055 Score=69.06 Aligned_cols=151 Identities=12% Similarity=0.133 Sum_probs=91.8
Q ss_pred cEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCC----CcEEEeccCCCC
Q 006473 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT----NQWEQLNLKGCP 177 (643)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t----~~W~~~~~~g~P 177 (643)
.-..||+.+++++.+....- .=.++|+ ..-++.++++||.... .+.+-.|++.+ ..|...... |-
T Consensus 47 ~s~~yD~~tn~~rpl~v~td-~FCSgg~-~L~dG~ll~tGG~~~G--------~~~ir~~~p~~~~~~~~w~e~~~~-m~ 115 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTD-TFCSGGA-FLPDGRLLQTGGDNDG--------NKAIRIFTPCTSDGTCDWTESPND-MQ 115 (243)
T ss_pred EEEEEecCCCcEEeccCCCC-CcccCcC-CCCCCCEEEeCCCCcc--------ccceEEEecCCCCCCCCceECccc-cc
Confidence 34579999999998764320 1122222 2227899999998653 24466677654 579877643 78
Q ss_pred CCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCC--C---ceEEeccCCCCCCCCCccceeEEEeCCEEEEE
Q 006473 178 SPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ--F---KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLY 251 (643)
Q Consensus 178 ~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t--~---~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~ 251 (643)
.+|.+.+++.+ +++++|+||... ...+.|.... . .|..+.... ...+..-+=+..+.-+++||++
T Consensus 116 ~~RWYpT~~~L~DG~vlIvGG~~~--------~t~E~~P~~~~~~~~~~~~~l~~~~-~~~~~nlYP~~~llPdG~lFi~ 186 (243)
T PF07250_consen 116 SGRWYPTATTLPDGRVLIVGGSNN--------PTYEFWPPKGPGPGPVTLPFLSQTS-DTLPNNLYPFVHLLPDGNLFIF 186 (243)
T ss_pred CCCccccceECCCCCEEEEeCcCC--------CcccccCCccCCCCceeeecchhhh-ccCccccCceEEEcCCCCEEEE
Confidence 89999988887 889999999752 1222222211 1 121121110 1123333434444559999999
Q ss_pred cCCCCCCCCccCCCCCCceeeeEEEEeCCCCee-EEeccC
Q 006473 252 GGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW-SKVKKI 290 (643)
Q Consensus 252 GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W-~~l~~~ 290 (643)
+... .++||+.++++ ..++.+
T Consensus 187 an~~------------------s~i~d~~~n~v~~~lP~l 208 (243)
T PF07250_consen 187 ANRG------------------SIIYDYKTNTVVRTLPDL 208 (243)
T ss_pred EcCC------------------cEEEeCCCCeEEeeCCCC
Confidence 9864 34889999977 455543
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0016 Score=65.82 Aligned_cols=151 Identities=15% Similarity=0.140 Sum_probs=94.3
Q ss_pred cCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCC----CceEEeccCCCC
Q 006473 155 YKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ----FKWQEIKPRFGS 230 (643)
Q Consensus 155 ~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t----~~W~~v~~~~~~ 230 (643)
...--.||+.+++++.+.... -.-.++| +..-++.++++||..+. ...+-.|++.. ..|......
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~t-d~FCSgg-~~L~dG~ll~tGG~~~G------~~~ir~~~p~~~~~~~~w~e~~~~--- 113 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQT-DTFCSGG-AFLPDGRLLQTGGDNDG------NKAIRIFTPCTSDGTCDWTESPND--- 113 (243)
T ss_pred eEEEEEEecCCCcEEeccCCC-CCcccCc-CCCCCCCEEEeCCCCcc------ccceEEEecCCCCCCCCceECccc---
Confidence 344568999999999886521 2222333 23348899999998663 34566677654 568877542
Q ss_pred CCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCC------CCeeEEeccCC-CCCCCceeeEE
Q 006473 231 MWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR------TWEWSKVKKIG-MPPGPRAGFSM 302 (643)
Q Consensus 231 ~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~------t~~W~~l~~~g-~~P~~R~g~s~ 302 (643)
+-.+|...++..+ +++++|+||.... .+.|-|. ...|..+.... ..|..-+-+..
T Consensus 114 -m~~~RWYpT~~~L~DG~vlIvGG~~~~----------------t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~ 176 (243)
T PF07250_consen 114 -MQSGRWYPTATTLPDGRVLIVGGSNNP----------------TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVH 176 (243)
T ss_pred -ccCCCccccceECCCCCEEEEeCcCCC----------------cccccCCccCCCCceeeecchhhhccCccccCceEE
Confidence 2788999999888 8999999998633 2222222 12232222110 11222333444
Q ss_pred EEECCeEEEeccccccccCccccccccCCcEEEEECCCCcE-EEeEec
Q 006473 303 CVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW-YPLELR 349 (643)
Q Consensus 303 ~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W-~~l~~~ 349 (643)
..-+|+||+|+.. .-.+||..++++ ..++..
T Consensus 177 llPdG~lFi~an~----------------~s~i~d~~~n~v~~~lP~l 208 (243)
T PF07250_consen 177 LLPDGNLFIFANR----------------GSIIYDYKTNTVVRTLPDL 208 (243)
T ss_pred EcCCCCEEEEEcC----------------CcEEEeCCCCeEEeeCCCC
Confidence 4458999999974 357889999977 566653
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.049 Score=59.41 Aligned_cols=187 Identities=15% Similarity=0.163 Sum_probs=104.2
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCC--cEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDF 158 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv 158 (643)
++.||+.+. ...++++|..++ .|+.-... + ...+-++.++.||+..+ ...+
T Consensus 120 ~~~v~v~~~----------~g~l~ald~~tG~~~W~~~~~~----~-~~ssP~v~~~~v~v~~~------------~g~l 172 (394)
T PRK11138 120 GGKVYIGSE----------KGQVYALNAEDGEVAWQTKVAG----E-ALSRPVVSDGLVLVHTS------------NGML 172 (394)
T ss_pred CCEEEEEcC----------CCEEEEEECCCCCCcccccCCC----c-eecCCEEECCEEEEECC------------CCEE
Confidence 677776433 247899999876 58754321 1 12223445788887543 1458
Q ss_pred EEEECCCCc--EEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc--eEEeccCCCCCCCC
Q 006473 159 WMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPS 234 (643)
Q Consensus 159 ~~yD~~t~~--W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~ 234 (643)
+.||+.+++ |+.-...+....+...+-++.++.+|+..+ ...++.+|+.+.+ |+.....+.+....
T Consensus 173 ~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~----------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~ 242 (394)
T PRK11138 173 QALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGD----------NGRVSAVLMEQGQLIWQQRISQPTGATEI 242 (394)
T ss_pred EEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcC----------CCEEEEEEccCChhhheeccccCCCccch
Confidence 999998875 876432111111222233455676666332 2357788887654 86532221110000
Q ss_pred Cc---cceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCC--eeEEeccCCCCCCCceeeEEEEECCeE
Q 006473 235 PR---SGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGPRAGFSMCVHKKRA 309 (643)
Q Consensus 235 ~R---~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~g~~P~~R~g~s~~~~~~~i 309 (643)
.| ...+.++.++.+|+.+. .+ .++++|+.+. .|+.-. +. . ..+++.+++|
T Consensus 243 ~~~~~~~~sP~v~~~~vy~~~~-~g----------------~l~ald~~tG~~~W~~~~--~~---~---~~~~~~~~~v 297 (394)
T PRK11138 243 DRLVDVDTTPVVVGGVVYALAY-NG----------------NLVALDLRSGQIVWKREY--GS---V---NDFAVDGGRI 297 (394)
T ss_pred hcccccCCCcEEECCEEEEEEc-CC----------------eEEEEECCCCCEEEeecC--CC---c---cCcEEECCEE
Confidence 01 12234456888887553 22 3889998765 587632 11 1 1346678999
Q ss_pred EEeccccccccCccccccccCCcEEEEECCCC--cEE
Q 006473 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH--RWY 344 (643)
Q Consensus 310 yvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~--~W~ 344 (643)
|+.... ..|+++|+.+. .|.
T Consensus 298 y~~~~~---------------g~l~ald~~tG~~~W~ 319 (394)
T PRK11138 298 YLVDQN---------------DRVYALDTRGGVELWS 319 (394)
T ss_pred EEEcCC---------------CeEEEEECCCCcEEEc
Confidence 987532 35999999876 364
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.029 Score=61.26 Aligned_cols=193 Identities=12% Similarity=0.070 Sum_probs=107.3
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCC--cEEEecCCC------CCCCceeeEEEEECCEEEEEeCccCCCCCCcc
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPN------SPPPRSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~------~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~ 152 (643)
++.||+.+.. ..+++||..++ .|+.-.... .+.++.....++.++.||+.+.
T Consensus 69 ~~~vy~~~~~----------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~---------- 128 (394)
T PRK11138 69 YNKVYAADRA----------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE---------- 128 (394)
T ss_pred CCEEEEECCC----------CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC----------
Confidence 7889887652 37899998866 487532210 0011223334556888887432
Q ss_pred eecCeEEEEECCCC--cEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc--eEEeccCC
Q 006473 153 HHYKDFWMLDLKTN--QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRF 228 (643)
Q Consensus 153 ~~~~dv~~yD~~t~--~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~ 228 (643)
...++.||..++ .|+.-.. .. ...+-++.++.||+..+ ...++.||+.+.+ |+.-...+
T Consensus 129 --~g~l~ald~~tG~~~W~~~~~----~~-~~ssP~v~~~~v~v~~~----------~g~l~ald~~tG~~~W~~~~~~~ 191 (394)
T PRK11138 129 --KGQVYALNAEDGEVAWQTKVA----GE-ALSRPVVSDGLVLVHTS----------NGMLQALNESDGAVKWTVNLDVP 191 (394)
T ss_pred --CCEEEEEECCCCCCcccccCC----Cc-eecCCEEECCEEEEECC----------CCEEEEEEccCCCEeeeecCCCC
Confidence 146899998876 4875432 11 11223456788887433 2468999998765 87654321
Q ss_pred CCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCC--eeEEeccC--CCCCCCc---eeeE
Q 006473 229 GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKI--GMPPGPR---AGFS 301 (643)
Q Consensus 229 ~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~--g~~P~~R---~g~s 301 (643)
. ...+...+-++.++.+|+..+ ++ .++.+|+.+. .|+..... +.....| ...+
T Consensus 192 ~---~~~~~~~sP~v~~~~v~~~~~-~g----------------~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~s 251 (394)
T PRK11138 192 S---LTLRGESAPATAFGGAIVGGD-NG----------------RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTT 251 (394)
T ss_pred c---ccccCCCCCEEECCEEEEEcC-CC----------------EEEEEEccCChhhheeccccCCCccchhcccccCCC
Confidence 1 111222233445666666433 22 2677777654 57653211 0000001 1234
Q ss_pred EEEECCeEEEeccccccccCccccccccCCcEEEEECCCC--cEEE
Q 006473 302 MCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH--RWYP 345 (643)
Q Consensus 302 ~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~--~W~~ 345 (643)
-++.++.+|+.+.. ..++++|+.+. .|..
T Consensus 252 P~v~~~~vy~~~~~---------------g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 252 PVVVGGVVYALAYN---------------GNLVALDLRSGQIVWKR 282 (394)
T ss_pred cEEECCEEEEEEcC---------------CeEEEEECCCCCEEEee
Confidence 45668888876531 35999999886 4764
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.16 Score=50.61 Aligned_cols=188 Identities=19% Similarity=0.232 Sum_probs=108.1
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCc--EEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDF 158 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~--W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv 158 (643)
++.||+..+ .+.|++||+.+++ |+.-.. .+ .....+..++.||+..+. +.+
T Consensus 36 ~~~v~~~~~----------~~~l~~~d~~tG~~~W~~~~~----~~-~~~~~~~~~~~v~v~~~~------------~~l 88 (238)
T PF13360_consen 36 GGRVYVASG----------DGNLYALDAKTGKVLWRFDLP----GP-ISGAPVVDGGRVYVGTSD------------GSL 88 (238)
T ss_dssp TTEEEEEET----------TSEEEEEETTTSEEEEEEECS----SC-GGSGEEEETTEEEEEETT------------SEE
T ss_pred CCEEEEEcC----------CCEEEEEECCCCCEEEEeecc----cc-ccceeeecccccccccce------------eee
Confidence 688888743 2589999998874 765431 11 122246668999888632 368
Q ss_pred EEEECCCC--cEEE-eccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc--eEEeccCCCCCCC
Q 006473 159 WMLDLKTN--QWEQ-LNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWP 233 (643)
Q Consensus 159 ~~yD~~t~--~W~~-~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P 233 (643)
+.||..++ .|+. ....+....+.....++.++.+|+... ...++.+|+.+++ |......+....+
T Consensus 89 ~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 89 YALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS----------SGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET----------CSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred EecccCCcceeeeeccccccccccccccCceEecCEEEEEec----------cCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 99998777 4984 433111112344455556777777653 3568999988765 7765543111101
Q ss_pred C---CccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCe--eEEeccCCCCCCCceeeEEEEECCe
Q 006473 234 S---PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE--WSKVKKIGMPPGPRAGFSMCVHKKR 308 (643)
Q Consensus 234 ~---~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~--W~~l~~~g~~P~~R~g~s~~~~~~~ 308 (643)
. .......+..++.||+..+... +..+|..+.. |+.. .. . ....+...++.
T Consensus 159 ~~~~~~~~~~~~~~~~~v~~~~~~g~-----------------~~~~d~~tg~~~w~~~-~~-----~-~~~~~~~~~~~ 214 (238)
T PF13360_consen 159 ISSFSDINGSPVISDGRVYVSSGDGR-----------------VVAVDLATGEKLWSKP-IS-----G-IYSLPSVDGGT 214 (238)
T ss_dssp EEEETTEEEEEECCTTEEEEECCTSS-----------------EEEEETTTTEEEEEEC-SS-------ECECEECCCTE
T ss_pred eeeecccccceEEECCEEEEEcCCCe-----------------EEEEECCCCCEEEEec-CC-----C-ccCCceeeCCE
Confidence 0 1112333444678888766431 4566888876 8433 21 1 12224455677
Q ss_pred EEEeccccccccCccccccccCCcEEEEECCCC--cEE
Q 006473 309 ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH--RWY 344 (643)
Q Consensus 309 iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~--~W~ 344 (643)
+|+.. . .+.|++||+.++ .|.
T Consensus 215 l~~~~-~--------------~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 215 LYVTS-S--------------DGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEEEE-T--------------TTEEEEEETTTTEEEEE
T ss_pred EEEEe-C--------------CCEEEEEECCCCCEEeE
Confidence 77766 2 245999999987 454
|
... |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.32 Score=52.52 Aligned_cols=170 Identities=17% Similarity=0.131 Sum_probs=89.7
Q ss_pred ccEEEEECCCC--cEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCC--cEEEeccCCC
Q 006473 101 GDLYRYDVEKQ--EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQLNLKGC 176 (643)
Q Consensus 101 ndv~~yd~~~~--~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~--~W~~~~~~g~ 176 (643)
..++++|+.++ .|+.-........+...+.++.++.+| +|.. -..++.+|+.++ .|+.-.. .
T Consensus 155 g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~-~~~~-----------~g~v~ald~~tG~~~W~~~~~--~ 220 (377)
T TIGR03300 155 GRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVL-VGFA-----------GGKLVALDLQTGQPLWEQRVA--L 220 (377)
T ss_pred CeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEE-EECC-----------CCEEEEEEccCCCEeeeeccc--c
Confidence 35888888766 476433221001122233344466544 4432 135788998776 4764321 1
Q ss_pred CCCC--------ceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc--eEEeccCCCCCCCCCccceeEEEeCC
Q 006473 177 PSPR--------SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQD 246 (643)
Q Consensus 177 P~~R--------s~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~R~~~s~~~~~~ 246 (643)
|... .....++.++.||+... ...+++||+.+.+ |..-.. . ..+.++.++
T Consensus 221 ~~g~~~~~~~~~~~~~p~~~~~~vy~~~~----------~g~l~a~d~~tG~~~W~~~~~-------~---~~~p~~~~~ 280 (377)
T TIGR03300 221 PKGRTELERLVDVDGDPVVDGGQVYAVSY----------QGRVAALDLRSGRVLWKRDAS-------S---YQGPAVDDN 280 (377)
T ss_pred CCCCCchhhhhccCCccEEECCEEEEEEc----------CCEEEEEECCCCcEEEeeccC-------C---ccCceEeCC
Confidence 1111 11223445777777532 2458899987654 755311 1 123345688
Q ss_pred EEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCC--eeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccc
Q 006473 247 EVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDV 324 (643)
Q Consensus 247 ~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~ 324 (643)
.||+... ++ .++++|..+. .|..-.. ..+...+.++.+++||+.. .
T Consensus 281 ~vyv~~~-~G----------------~l~~~d~~tG~~~W~~~~~-----~~~~~ssp~i~g~~l~~~~-~--------- 328 (377)
T TIGR03300 281 RLYVTDA-DG----------------VVVALDRRSGSELWKNDEL-----KYRQLTAPAVVGGYLVVGD-F--------- 328 (377)
T ss_pred EEEEECC-CC----------------eEEEEECCCCcEEEccccc-----cCCccccCEEECCEEEEEe-C---------
Confidence 8887642 22 3788887654 5765321 1122233455677777643 2
Q ss_pred cccccCCcEEEEECCCC
Q 006473 325 IMSLFLNELYGFQLDNH 341 (643)
Q Consensus 325 ~~~~~~ndl~~yd~~t~ 341 (643)
...|+++|+.+.
T Consensus 329 -----~G~l~~~d~~tG 340 (377)
T TIGR03300 329 -----EGYLHWLSREDG 340 (377)
T ss_pred -----CCEEEEEECCCC
Confidence 235889988765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.32 Score=48.40 Aligned_cols=177 Identities=23% Similarity=0.278 Sum_probs=102.4
Q ss_pred ccEEEEECCCCc--EEEecCCCCCCCceeeE--EEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCc--EEEeccC
Q 006473 101 GDLYRYDVEKQE--WKVISSPNSPPPRSAHQ--AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLK 174 (643)
Q Consensus 101 ndv~~yd~~~~~--W~~l~s~~~P~pRs~ha--~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~--W~~~~~~ 174 (643)
+.|.++|+.+++ |+.-.. .+..+.. .+..++.||+..+ ...+++||..+++ |+.-..
T Consensus 3 g~l~~~d~~tG~~~W~~~~~----~~~~~~~~~~~~~~~~v~~~~~------------~~~l~~~d~~tG~~~W~~~~~- 65 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLG----PGIGGPVATAVPDGGRVYVASG------------DGNLYALDAKTGKVLWRFDLP- 65 (238)
T ss_dssp SEEEEEETTTTEEEEEEECS----SSCSSEEETEEEETTEEEEEET------------TSEEEEEETTTSEEEEEEECS-
T ss_pred CEEEEEECCCCCEEEEEECC----CCCCCccceEEEeCCEEEEEcC------------CCEEEEEECCCCCEEEEeecc-
Confidence 367888887764 775321 1122222 3346899999853 2679999998875 765432
Q ss_pred CCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc--eE-EeccCCCCCCCC-CccceeEEEeCCEEEE
Q 006473 175 GCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQ-EIKPRFGSMWPS-PRSGFQFFVYQDEVFL 250 (643)
Q Consensus 175 g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~-~v~~~~~~~~P~-~R~~~s~~~~~~~iyv 250 (643)
.+.....+..++.||+..+ -+.++.||+.+.+ |+ .....+ +. .+......+.++.+|+
T Consensus 66 ----~~~~~~~~~~~~~v~v~~~----------~~~l~~~d~~tG~~~W~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 127 (238)
T PF13360_consen 66 ----GPISGAPVVDGGRVYVGTS----------DGSLYALDAKTGKVLWSIYLTSSP----PAGVRSSSSPAVDGDRLYV 127 (238)
T ss_dssp ----SCGGSGEEEETTEEEEEET----------TSEEEEEETTTSCEEEEEEE-SSC----TCSTB--SEEEEETTEEEE
T ss_pred ----ccccceeeecccccccccc----------eeeeEecccCCcceeeeecccccc----ccccccccCceEecCEEEE
Confidence 1112224777888888752 2378999977654 88 444421 12 2333344445777766
Q ss_pred EcCCCCCCCCccCCCCCCceeeeEEEEeCCCC--eeEEeccCCCCCCC-------ceeeEEEEECCeEEEeccccccccC
Q 006473 251 YGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGP-------RAGFSMCVHKKRALLFGGVVDMEMK 321 (643)
Q Consensus 251 ~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~g~~P~~-------R~g~s~~~~~~~iyvfGG~~~~~~~ 321 (643)
... . ..++++|+.+. .|..-... ++.. .....+++.++.+|++.+..
T Consensus 128 ~~~-~----------------g~l~~~d~~tG~~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g----- 183 (238)
T PF13360_consen 128 GTS-S----------------GKLVALDPKTGKLLWKYPVGE--PRGSSPISSFSDINGSPVISDGRVYVSSGDG----- 183 (238)
T ss_dssp EET-C----------------SEEEEEETTTTEEEEEEESST--T-SS--EEEETTEEEEEECCTTEEEEECCTS-----
T ss_pred Eec-c----------------CcEEEEecCCCcEEEEeecCC--CCCCcceeeecccccceEEECCEEEEEcCCC-----
Confidence 653 2 23889998765 57765422 1211 12234444567888877642
Q ss_pred ccccccccCCcEEEEECCCCc--EEEe
Q 006473 322 GDVIMSLFLNELYGFQLDNHR--WYPL 346 (643)
Q Consensus 322 ~~~~~~~~~ndl~~yd~~t~~--W~~l 346 (643)
.+..+|+.+++ |...
T Consensus 184 ----------~~~~~d~~tg~~~w~~~ 200 (238)
T PF13360_consen 184 ----------RVVAVDLATGEKLWSKP 200 (238)
T ss_dssp ----------SEEEEETTTTEEEEEEC
T ss_pred ----------eEEEEECCCCCEEEEec
Confidence 26777999986 7333
|
... |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.32 Score=52.56 Aligned_cols=188 Identities=14% Similarity=0.131 Sum_probs=100.7
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCc--EEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDF 158 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~--W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv 158 (643)
++.||+.+. ...|++||+.+++ |+.-... +...+.++.++.+|+.+. -..+
T Consensus 65 ~~~v~v~~~----------~g~v~a~d~~tG~~~W~~~~~~-----~~~~~p~v~~~~v~v~~~------------~g~l 117 (377)
T TIGR03300 65 GGKVYAADA----------DGTVVALDAETGKRLWRVDLDE-----RLSGGVGADGGLVFVGTE------------KGEV 117 (377)
T ss_pred CCEEEEECC----------CCeEEEEEccCCcEeeeecCCC-----CcccceEEcCCEEEEEcC------------CCEE
Confidence 677776554 1469999988764 8743221 111223344677776432 1468
Q ss_pred EEEECCCCc--EEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc--eEEeccCCCCCCCC
Q 006473 159 WMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPS 234 (643)
Q Consensus 159 ~~yD~~t~~--W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~ 234 (643)
+.||..+++ |+.... .. .....++.++.+|+..+ ...++.||+.+.+ |+.-...+. ..
T Consensus 118 ~ald~~tG~~~W~~~~~----~~-~~~~p~v~~~~v~v~~~----------~g~l~a~d~~tG~~~W~~~~~~~~---~~ 179 (377)
T TIGR03300 118 IALDAEDGKELWRAKLS----SE-VLSPPLVANGLVVVRTN----------DGRLTALDAATGERLWTYSRVTPA---LT 179 (377)
T ss_pred EEEECCCCcEeeeeccC----ce-eecCCEEECCEEEEECC----------CCeEEEEEcCCCceeeEEccCCCc---ee
Confidence 999987764 875432 11 12233445777777432 2458999987654 775433210 01
Q ss_pred CccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCC--eeEEeccC--CCCCCCc---eeeEEEEECC
Q 006473 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKI--GMPPGPR---AGFSMCVHKK 307 (643)
Q Consensus 235 ~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~--g~~P~~R---~g~s~~~~~~ 307 (643)
.+...+.++.++.+| +|...+ .++.+|+.+. .|+..... +.....| ...+.++.++
T Consensus 180 ~~~~~sp~~~~~~v~-~~~~~g----------------~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~ 242 (377)
T TIGR03300 180 LRGSASPVIADGGVL-VGFAGG----------------KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGG 242 (377)
T ss_pred ecCCCCCEEECCEEE-EECCCC----------------EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECC
Confidence 122233445566544 444332 3788887654 67653211 0000011 1233455677
Q ss_pred eEEEeccccccccCccccccccCCcEEEEECCCC--cEEE
Q 006473 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH--RWYP 345 (643)
Q Consensus 308 ~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~--~W~~ 345 (643)
.+|+... ...+++||+.+. .|..
T Consensus 243 ~vy~~~~---------------~g~l~a~d~~tG~~~W~~ 267 (377)
T TIGR03300 243 QVYAVSY---------------QGRVAALDLRSGRVLWKR 267 (377)
T ss_pred EEEEEEc---------------CCEEEEEECCCCcEEEee
Confidence 7777542 134999998876 4644
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR01640 F_box_assoc_1 F-box protein interaction domain | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.1 Score=52.41 Aligned_cols=164 Identities=14% Similarity=0.109 Sum_probs=92.6
Q ss_pred CeEEEEECCCCcEEEeccCCCCCC-Ccee-EEEEE----CC-EEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSP-RSGH-RMVLY----KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~-Rs~h-~~~~~----~~-~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (643)
..+.++||.|++|..++....+.. ...+ .+..+ +. +|+.+...... .....+.+|++.++.|+.+...+
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~----~~~~~~~Vys~~~~~Wr~~~~~~ 89 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN----RNQSEHQVYTLGSNSWRTIECSP 89 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC----CCCccEEEEEeCCCCccccccCC
Confidence 358899999999999976322111 1111 11112 12 45555432111 12457899999999999987442
Q ss_pred CCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEE-eccCCCCCCCceeeEEEEECC
Q 006473 229 GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK-VKKIGMPPGPRAGFSMCVHKK 307 (643)
Q Consensus 229 ~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~-l~~~g~~P~~R~g~s~~~~~~ 307 (643)
+........+.++|.||-+.-.... .....+..||+.+.+|.. ++.+...........++.++|
T Consensus 90 ----~~~~~~~~~v~~~G~lyw~~~~~~~-----------~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G 154 (230)
T TIGR01640 90 ----PHHPLKSRGVCINGVLYYLAYTLKT-----------NPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKG 154 (230)
T ss_pred ----CCccccCCeEEECCEEEEEEEECCC-----------CCcEEEEEEEcccceEeeeeecCccccccccceEEEEECC
Confidence 1111112255678988888643221 111258899999999995 543211001122456677789
Q ss_pred eEEEeccccccccCccccccccCCcEEEEE-CCCCcEEEeEe
Q 006473 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQ-LDNHRWYPLEL 348 (643)
Q Consensus 308 ~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd-~~t~~W~~l~~ 348 (643)
+|.++...... ..-+||+++ -....|+++-.
T Consensus 155 ~L~~v~~~~~~----------~~~~IWvl~d~~~~~W~k~~~ 186 (230)
T TIGR01640 155 KLAVLKQKKDT----------NNFDLWVLNDAGKQEWSKLFT 186 (230)
T ss_pred EEEEEEecCCC----------CcEEEEEECCCCCCceeEEEE
Confidence 98887654210 013577775 44567987544
|
This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.74 Score=46.50 Aligned_cols=200 Identities=17% Similarity=0.089 Sum_probs=104.7
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDF 158 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv 158 (643)
++.||+..- ..+.+|++++.+..-..+..+ . -.+++.. ++.|||... ..+
T Consensus 11 ~g~l~~~D~---------~~~~i~~~~~~~~~~~~~~~~---~---~~G~~~~~~~g~l~v~~~-------------~~~ 62 (246)
T PF08450_consen 11 DGRLYWVDI---------PGGRIYRVDPDTGEVEVIDLP---G---PNGMAFDRPDGRLYVADS-------------GGI 62 (246)
T ss_dssp TTEEEEEET---------TTTEEEEEETTTTEEEEEESS---S---EEEEEEECTTSEEEEEET-------------TCE
T ss_pred CCEEEEEEc---------CCCEEEEEECCCCeEEEEecC---C---CceEEEEccCCEEEEEEc-------------Cce
Confidence 467777643 235899999999887765542 2 2333333 688888764 235
Q ss_pred EEEECCCCcEEEeccC--CC-CCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCC
Q 006473 159 WMLDLKTNQWEQLNLK--GC-PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSP 235 (643)
Q Consensus 159 ~~yD~~t~~W~~~~~~--g~-P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~ 235 (643)
.++|+.+++++.+... +. +..+.+-.++--++.||+---...... ......+|++++. .+...+... ..
T Consensus 63 ~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~-~~~~g~v~~~~~~-~~~~~~~~~------~~ 134 (246)
T PF08450_consen 63 AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGAS-GIDPGSVYRIDPD-GKVTVVADG------LG 134 (246)
T ss_dssp EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTT-CGGSEEEEEEETT-SEEEEEEEE------ES
T ss_pred EEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccc-cccccceEEECCC-CeEEEEecC------cc
Confidence 6679999999887663 11 233333333334778776432211110 0001579999998 555544322 11
Q ss_pred ccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCC--CCeeEEeccCCCCCCC-ceeeEEEEE-CCeE
Q 006473 236 RSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR--TWEWSKVKKIGMPPGP-RAGFSMCVH-KKRA 309 (643)
Q Consensus 236 R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~--t~~W~~l~~~g~~P~~-R~g~s~~~~-~~~i 309 (643)
+ -..++.. +..||+.--.. ..+|+|++. +..+.........+.. ..--++++- .++|
T Consensus 135 ~-pNGi~~s~dg~~lyv~ds~~----------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l 197 (246)
T PF08450_consen 135 F-PNGIAFSPDGKTLYVADSFN----------------GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNL 197 (246)
T ss_dssp S-EEEEEEETTSSEEEEEETTT----------------TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-E
T ss_pred c-ccceEECCcchheeeccccc----------------ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCE
Confidence 1 1233333 44677743322 338888875 3334432221111221 223355555 6888
Q ss_pred EEeccccccccCccccccccCCcEEEEECCCCcEEEeE
Q 006473 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (643)
Q Consensus 310 yvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (643)
|+..-. .+.|++||++...-..+.
T Consensus 198 ~va~~~--------------~~~I~~~~p~G~~~~~i~ 221 (246)
T PF08450_consen 198 WVADWG--------------GGRIVVFDPDGKLLREIE 221 (246)
T ss_dssp EEEEET--------------TTEEEEEETTSCEEEEEE
T ss_pred EEEEcC--------------CCEEEEECCCccEEEEEc
Confidence 886321 245899998754333333
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.14 Score=54.86 Aligned_cols=194 Identities=18% Similarity=0.212 Sum_probs=110.2
Q ss_pred CCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCE-EEE
Q 006473 63 VPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNY-LYI 139 (643)
Q Consensus 63 ~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~-iyv 139 (643)
...|+-+.--++-+.| .-.|+|.+|. ++. -.+|..|-.++. .+.+.. ..++--..+.+ +|. ..+
T Consensus 208 a~~ps~~~I~sv~FHp--~~plllvaG~--d~~-----lrifqvDGk~N~--~lqS~~--l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 208 AAHPSHGGITSVQFHP--TAPLLLVAGL--DGT-----LRIFQVDGKVNP--KLQSIH--LEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCcCcCCceEEEecC--CCceEEEecC--CCc-----EEEEEecCccCh--hheeee--eccCccceeeecCCCceEEE
Confidence 3455555555666777 5689999994 332 245666666665 444443 22222222222 444 777
Q ss_pred EeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEE-ECCEEEEEeeeecCCCceeeeccEEEEEcCC
Q 006473 140 FGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (643)
Q Consensus 140 fGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~-~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t 218 (643)
++|. ..-+|.||+.+.+-+++.+......++-+...+ ..+.++++-|.. .-++++...|
T Consensus 275 ~s~r-----------rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~---------G~I~lLhakT 334 (514)
T KOG2055|consen 275 TSGR-----------RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN---------GHIHLLHAKT 334 (514)
T ss_pred eccc-----------ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC---------ceEEeehhhh
Confidence 7775 355889999999998887643222333333322 344566666643 3466666677
Q ss_pred CceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCce
Q 006473 219 FKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRA 298 (643)
Q Consensus 219 ~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~ 298 (643)
+.|-.--.+ +-..+.+++...+..||+.||+. . +|++|+..+.-...-.- -....
T Consensus 335 ~eli~s~Ki-----eG~v~~~~fsSdsk~l~~~~~~G-e----------------V~v~nl~~~~~~~rf~D---~G~v~ 389 (514)
T KOG2055|consen 335 KELITSFKI-----EGVVSDFTFSSDSKELLASGGTG-E----------------VYVWNLRQNSCLHRFVD---DGSVH 389 (514)
T ss_pred hhhhheeee-----ccEEeeEEEecCCcEEEEEcCCc-e----------------EEEEecCCcceEEEEee---cCccc
Confidence 776433333 44455566666677889998875 3 89999887743332110 11234
Q ss_pred eeEEEE-ECCeEEEecc
Q 006473 299 GFSMCV-HKKRALLFGG 314 (643)
Q Consensus 299 g~s~~~-~~~~iyvfGG 314 (643)
|-+.|. .++..+..|-
T Consensus 390 gts~~~S~ng~ylA~GS 406 (514)
T KOG2055|consen 390 GTSLCISLNGSYLATGS 406 (514)
T ss_pred eeeeeecCCCceEEecc
Confidence 444443 4666555554
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.43 Score=49.45 Aligned_cols=125 Identities=18% Similarity=0.343 Sum_probs=78.6
Q ss_pred EEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCce--eEEEEE-CCEEEEEeeeecCCCceeeeccEEEEE
Q 006473 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSG--HRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFD 215 (643)
Q Consensus 139 vfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~--h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD 215 (643)
++||.+..... . ....+..||+.+.+|..+... ..| +.+... ++.||+.|-+..... -...+-.||
T Consensus 2 ~VGG~F~~aGs--L-~C~~lC~yd~~~~qW~~~g~~-----i~G~V~~l~~~~~~~Llv~G~ft~~~~---~~~~la~yd 70 (281)
T PF12768_consen 2 YVGGSFTSAGS--L-PCPGLCLYDTDNSQWSSPGNG-----ISGTVTDLQWASNNQLLVGGNFTLNGT---NSSNLATYD 70 (281)
T ss_pred EEeeecCCCCC--c-CCCEEEEEECCCCEeecCCCC-----ceEEEEEEEEecCCEEEEEEeeEECCC---CceeEEEEe
Confidence 56776655432 1 247899999999999987652 333 334444 678888877665431 245688999
Q ss_pred cCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEecc
Q 006473 216 LDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (643)
Q Consensus 216 ~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~ 289 (643)
..+.+|..+.......+|.|.....+... ...+++.|..... ..-+..| ...+|..+..
T Consensus 71 ~~~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g-------------~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 71 FKNQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANG-------------STFLMKY--DGSSWSSIGS 130 (281)
T ss_pred cCCCeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecCC-------------CceEEEE--cCCceEeccc
Confidence 99999999887422334555543333333 4567777765211 2235556 4668988866
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=95.53 E-value=5.9 Score=45.10 Aligned_cols=218 Identities=14% Similarity=0.127 Sum_probs=108.0
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCC--cEEEecCCC-CCCC-----ceeeEEEEECCEEEEEeCccCCCCCCcc
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPN-SPPP-----RSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~-~P~p-----Rs~ha~~~~~~~iyvfGG~~~~~~~~~~ 152 (643)
++.||+... .+.|+++|..++ .|+.-.... .-.+ ......++.+++||+...
T Consensus 69 ~g~vyv~s~----------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~---------- 128 (527)
T TIGR03075 69 DGVMYVTTS----------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL---------- 128 (527)
T ss_pred CCEEEEECC----------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC----------
Confidence 678887544 246899999876 487543211 0000 111223455777776432
Q ss_pred eecCeEEEEECCCCc--EEEeccCCCCCC--CceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc--eEEecc
Q 006473 153 HHYKDFWMLDLKTNQ--WEQLNLKGCPSP--RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKP 226 (643)
Q Consensus 153 ~~~~dv~~yD~~t~~--W~~~~~~g~P~~--Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~ 226 (643)
-..++.||..|.+ |+.-.. .+.. ....+-++.++.||+-...... .....|+.||..+.+ |+.-..
T Consensus 129 --dg~l~ALDa~TGk~~W~~~~~--~~~~~~~~tssP~v~~g~Vivg~~~~~~----~~~G~v~AlD~~TG~~lW~~~~~ 200 (527)
T TIGR03075 129 --DARLVALDAKTGKVVWSKKNG--DYKAGYTITAAPLVVKGKVITGISGGEF----GVRGYVTAYDAKTGKLVWRRYTV 200 (527)
T ss_pred --CCEEEEEECCCCCEEeecccc--cccccccccCCcEEECCEEEEeeccccc----CCCcEEEEEECCCCceeEeccCc
Confidence 1468999998875 765322 1111 1122345668877764321111 123568889988764 765443
Q ss_pred CCCCC-----------------CC---CCccceeE----EEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCC
Q 006473 227 RFGSM-----------------WP---SPRSGFQF----FVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR 280 (643)
Q Consensus 227 ~~~~~-----------------~P---~~R~~~s~----~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~ 280 (643)
.+... .+ ..+.+..+ ++- .+.||+--|.-.. ...........+.+.+..+|+.
T Consensus 201 p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p-~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 201 PGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSP-WNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred CCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCC-CCCCCCCCCCccceeEEEEccc
Confidence 21100 00 01222111 222 4566665554211 0000011223567889999988
Q ss_pred CC--eeEEeccCCC-----CCCCceeeEEEEECCe---EEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 281 TW--EWSKVKKIGM-----PPGPRAGFSMCVHKKR---ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 281 t~--~W~~l~~~g~-----~P~~R~g~s~~~~~~~---iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
|. +|..-..... .+.+..-+.+- .+++ +++.+..+ ..+|++|..|.+
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~-~~G~~~~~v~~~~K~--------------G~~~vlDr~tG~ 336 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLK-KDGKPRKLLAHADRN--------------GFFYVLDRTNGK 336 (527)
T ss_pred cCCEEEeeeCCCCCCccccCCCCcEEEEec-cCCcEEEEEEEeCCC--------------ceEEEEECCCCc
Confidence 76 6776543211 11111111110 2443 77777654 348899988875
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.23 Score=53.38 Aligned_cols=150 Identities=23% Similarity=0.316 Sum_probs=91.8
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcE-EEeccCCCCCCCceeEEEEECCE-EEEEeeeecCCCceeeeccE
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQW-EQLNLKGCPSPRSGHRMVLYKHK-IIVFGGFYDTLREVRYYNDL 211 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W-~~~~~~g~P~~Rs~h~~~~~~~~-lyvfGG~~~~~~~~~~~~dv 211 (643)
...|.+.+|.+.. -.+|..|-.+|.- +.+... -.|....+ ..-++. .++++|. -.-+
T Consensus 224 ~~plllvaG~d~~---------lrifqvDGk~N~~lqS~~l~--~fPi~~a~-f~p~G~~~i~~s~r---------rky~ 282 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT---------LRIFQVDGKVNPKLQSIHLE--KFPIQKAE-FAPNGHSVIFTSGR---------RKYL 282 (514)
T ss_pred CCceEEEecCCCc---------EEEEEecCccChhheeeeec--cCccceee-ecCCCceEEEeccc---------ceEE
Confidence 4578889987543 4577777777752 111111 11222111 122444 7777775 3457
Q ss_pred EEEEcCCCceEEeccCCCCCCCCCccceeE-EEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccC
Q 006473 212 YVFDLDQFKWQEIKPRFGSMWPSPRSGFQF-FVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI 290 (643)
Q Consensus 212 ~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~ 290 (643)
|.||+.+.+-+++.++-+- + .++-+.+ +.+.+.++++-|..+. ++.+...++.|..--.+
T Consensus 283 ysyDle~ak~~k~~~~~g~--e-~~~~e~FeVShd~~fia~~G~~G~----------------I~lLhakT~eli~s~Ki 343 (514)
T KOG2055|consen 283 YSYDLETAKVTKLKPPYGV--E-EKSMERFEVSHDSNFIAIAGNNGH----------------IHLLHAKTKELITSFKI 343 (514)
T ss_pred EEeeccccccccccCCCCc--c-cchhheeEecCCCCeEEEcccCce----------------EEeehhhhhhhhheeee
Confidence 9999999999888876331 2 2233333 3346667777777665 77888888888654332
Q ss_pred CCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCC
Q 006473 291 GMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (643)
Q Consensus 291 g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (643)
+..-..++....+.+||+.||. ..||+||+..+
T Consensus 344 ---eG~v~~~~fsSdsk~l~~~~~~---------------GeV~v~nl~~~ 376 (514)
T KOG2055|consen 344 ---EGVVSDFTFSSDSKELLASGGT---------------GEVYVWNLRQN 376 (514)
T ss_pred ---ccEEeeEEEecCCcEEEEEcCC---------------ceEEEEecCCc
Confidence 2233444555556788888885 35999999887
|
|
| >PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.41 Score=51.24 Aligned_cols=127 Identities=14% Similarity=0.097 Sum_probs=73.4
Q ss_pred ECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCcee---eec
Q 006473 133 WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVR---YYN 209 (643)
Q Consensus 133 ~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~---~~~ 209 (643)
.+++|+..+.. ..+.+||+.+..-...+. ++.+.....++.++++||++........... ..-
T Consensus 75 ~gskIv~~d~~------------~~t~vyDt~t~av~~~P~--l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~F 140 (342)
T PF07893_consen 75 HGSKIVAVDQS------------GRTLVYDTDTRAVATGPR--LHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCF 140 (342)
T ss_pred cCCeEEEEcCC------------CCeEEEECCCCeEeccCC--CCCCCcceEEEEeCCeEEEeeccCccccccCccceeE
Confidence 38888888654 237799999988775554 4555555566777999999987643221100 011
Q ss_pred cEEEEE--------cCCCceEEeccCCCCCCCCC--ccceeEEEe-CCEEEE-EcCCCCCCCCccCCCCCCceeeeEEEE
Q 006473 210 DLYVFD--------LDQFKWQEIKPRFGSMWPSP--RSGFQFFVY-QDEVFL-YGGYSKEVSTDKNQSEKGIIHSDLWSL 277 (643)
Q Consensus 210 dv~~yD--------~~t~~W~~v~~~~~~~~P~~--R~~~s~~~~-~~~iyv-~GG~~~~~~~~~~~~~~~~~~~dv~~y 277 (643)
.+..|+ .....|+.++++|-...... +.-.+.+++ +..|+| .-|.. .-+|.|
T Consensus 141 E~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~----------------~GTysf 204 (342)
T PF07893_consen 141 EALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR----------------WGTYSF 204 (342)
T ss_pred EEeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc----------------eEEEEE
Confidence 233333 22346777766532111111 001233344 667777 33321 238999
Q ss_pred eCCCCeeEEecc
Q 006473 278 DPRTWEWSKVKK 289 (643)
Q Consensus 278 d~~t~~W~~l~~ 289 (643)
|+.+.+|+++-.
T Consensus 205 Dt~~~~W~~~Gd 216 (342)
T PF07893_consen 205 DTESHEWRKHGD 216 (342)
T ss_pred EcCCcceeeccc
Confidence 999999999954
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=1.9 Score=48.05 Aligned_cols=149 Identities=11% Similarity=0.101 Sum_probs=79.4
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSP 235 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~ 235 (643)
..+|++|+.+++-+.+.. .+..-...+..--+..|++.....+ ..++|++|+.+...+.+.... ..
T Consensus 242 ~~L~~~dl~tg~~~~lt~--~~g~~~~~~wSPDG~~La~~~~~~g-------~~~Iy~~dl~tg~~~~lt~~~-----~~ 307 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTS--FPGINGAPRFSPDGKKLALVLSKDG-------QPEIYVVDIATKALTRITRHR-----AI 307 (448)
T ss_pred cEEEEEECCCCCeEEecC--CCCCcCCeeECCCCCEEEEEEeCCC-------CeEEEEEECCCCCeEECccCC-----CC
Confidence 579999999887766654 2211111111111445655433221 357999999998887775431 11
Q ss_pred ccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccc
Q 006473 236 RSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGV 315 (643)
Q Consensus 236 R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~ 315 (643)
-...+....+..|++.....+ ...+|++|+.+..+.++...+... ...+ ..-+++.++|.+.
T Consensus 308 ~~~p~wSpDG~~I~f~s~~~g--------------~~~Iy~~dl~~g~~~~Lt~~g~~~---~~~~-~SpDG~~l~~~~~ 369 (448)
T PRK04792 308 DTEPSWHPDGKSLIFTSERGG--------------KPQIYRVNLASGKVSRLTFEGEQN---LGGS-ITPDGRSMIMVNR 369 (448)
T ss_pred ccceEECCCCCEEEEEECCCC--------------CceEEEEECCCCCEEEEecCCCCC---cCee-ECCCCCEEEEEEe
Confidence 111222222445555432221 146999999999888875322111 1111 1224544555433
Q ss_pred cccccCccccccccCCcEEEEECCCCcEEEeE
Q 006473 316 VDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (643)
Q Consensus 316 ~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (643)
.. -...||.+|+.+.....+.
T Consensus 370 ~~-----------g~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 370 TN-----------GKFNIARQDLETGAMQVLT 390 (448)
T ss_pred cC-----------CceEEEEEECCCCCeEEcc
Confidence 21 1246999999998776654
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=4.9 Score=44.42 Aligned_cols=194 Identities=13% Similarity=0.002 Sum_probs=96.5
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (643)
..+|++|+.+++.+.++... ..-...+....+..|++...... ..++|++|+.++...++... +..
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~--g~~~~~~~SPDG~~la~~~~~~g---------~~~Iy~~d~~~~~~~~Lt~~--~~~- 291 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFP--GMTFAPRFSPDGRKVVMSLSQGG---------NTDIYTMDLRSGTTTRLTDS--PAI- 291 (435)
T ss_pred CEEEEEECCCCcEEEeecCC--CcccCcEECCCCCEEEEEEecCC---------CceEEEEECCCCceEEccCC--CCc-
Confidence 57999999999888776422 21122222222445554432211 25799999999887776541 211
Q ss_pred ceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCC
Q 006473 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVST 260 (643)
Q Consensus 181 s~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~ 260 (643)
..+....-+++-++|.... .+ ...+|++|+.+...+.+... ............+..|++.. ....
T Consensus 292 ~~~~~~spDG~~i~f~s~~-~g-----~~~Iy~~d~~g~~~~~lt~~-----~~~~~~~~~SpdG~~ia~~~-~~~~--- 356 (435)
T PRK05137 292 DTSPSYSPDGSQIVFESDR-SG-----SPQLYVMNADGSNPRRISFG-----GGRYSTPVWSPRGDLIAFTK-QGGG--- 356 (435)
T ss_pred cCceeEcCCCCEEEEEECC-CC-----CCeEEEEECCCCCeEEeecC-----CCcccCeEECCCCCEEEEEE-cCCC---
Confidence 1111111234433343311 11 24789999888777776543 11111112222244554443 2111
Q ss_pred ccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEE-ECCeEEEeccccccccCccccccccCCcEEEEECC
Q 006473 261 DKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD 339 (643)
Q Consensus 261 ~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~-~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~ 339 (643)
...++.+|+.+.....+... ... ....+ -+++.++|-...... .....||++++.
T Consensus 357 ----------~~~i~~~d~~~~~~~~lt~~-----~~~-~~p~~spDG~~i~~~~~~~~~--------~~~~~L~~~dl~ 412 (435)
T PRK05137 357 ----------QFSIGVMKPDGSGERILTSG-----FLV-EGPTWAPNGRVIMFFRQTPGS--------GGAPKLYTVDLT 412 (435)
T ss_pred ----------ceEEEEEECCCCceEeccCC-----CCC-CCCeECCCCCEEEEEEccCCC--------CCcceEEEEECC
Confidence 13588889876655554321 111 11122 255655554432100 002469999998
Q ss_pred CCcEEEeE
Q 006473 340 NHRWYPLE 347 (643)
Q Consensus 340 t~~W~~l~ 347 (643)
...-..+.
T Consensus 413 g~~~~~l~ 420 (435)
T PRK05137 413 GRNEREVP 420 (435)
T ss_pred CCceEEcc
Confidence 76655554
|
|
| >cd00094 HX Hemopexin-like repeats | Back alignment and domain information |
|---|
Probab=95.13 E-value=1.5 Score=42.87 Aligned_cols=149 Identities=21% Similarity=0.340 Sum_probs=76.1
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCc--EEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecC
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYK 156 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~--W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~ 156 (643)
.+++|+|-|. .+|+|+..... -+.|...-...|..-.++... ++.+|+|-| +
T Consensus 16 ~g~~y~FkG~-----------~~w~~~~~~~~~~p~~I~~~w~~~p~~IDAa~~~~~~~~~yfFkg-------------~ 71 (194)
T cd00094 16 RGELYFFKGR-----------YFWRLSPGKPPGSPFLISSFWPSLPSPVDAAFERPDTGKIYFFKG-------------D 71 (194)
T ss_pred CCEEEEEeCC-----------EEEEEeCCCCCCCCeEhhhhCCCCCCCccEEEEECCCCEEEEECC-------------C
Confidence 4889999883 56777765221 122222111122223334343 389999977 4
Q ss_pred eEEEEECCCCcEE---EeccCCCCC-CCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCC
Q 006473 157 DFWMLDLKTNQWE---QLNLKGCPS-PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGS 230 (643)
Q Consensus 157 dv~~yD~~t~~W~---~~~~~g~P~-~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~ 230 (643)
.+|+|+..+..+. .+...+.|. +..-.++..+ ++++|+|.| +..|+||...++...--+.+..
T Consensus 72 ~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-----------~~y~ry~~~~~~v~~~yP~~i~ 140 (194)
T cd00094 72 KYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-----------DKYWRYDEKTQKMDPGYPKLIE 140 (194)
T ss_pred EEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-----------CEEEEEeCCCccccCCCCcchh
Confidence 6888887642221 111111222 1111233344 579999988 3578888765543211111000
Q ss_pred ----CCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCe
Q 006473 231 ----MWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (643)
Q Consensus 231 ----~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (643)
.+|.. ...++...++.+|+|-|. ..|+||..+.+
T Consensus 141 ~~w~g~p~~-idaa~~~~~~~~yfF~g~------------------~y~~~d~~~~~ 178 (194)
T cd00094 141 TDFPGVPDK-VDAAFRWLDGYYYFFKGD------------------QYWRFDPRSKE 178 (194)
T ss_pred hcCCCcCCC-cceeEEeCCCcEEEEECC------------------EEEEEeCccce
Confidence 01221 222222224889999774 38899987665
|
; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=95.10 E-value=3.9 Score=41.50 Aligned_cols=101 Identities=16% Similarity=0.130 Sum_probs=53.6
Q ss_pred EEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEE
Q 006473 83 ELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWM 160 (643)
Q Consensus 83 ~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~ 160 (643)
.+|+.++. -+.+++||+.+++-...-... ..++ +++.. +..+|+.++. .+.+++
T Consensus 2 ~~~~s~~~---------d~~v~~~d~~t~~~~~~~~~~-~~~~---~l~~~~dg~~l~~~~~~-----------~~~v~~ 57 (300)
T TIGR03866 2 KAYVSNEK---------DNTISVIDTATLEVTRTFPVG-QRPR---GITLSKDGKLLYVCASD-----------SDTIQV 57 (300)
T ss_pred cEEEEecC---------CCEEEEEECCCCceEEEEECC-CCCC---ceEECCCCCEEEEEECC-----------CCeEEE
Confidence 46666662 247888998877643322211 1122 22222 3467777653 246889
Q ss_pred EECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
||+.+.+....-.. .+.+ +.+++. ++.+|+.++. ...+.+||+.+..
T Consensus 58 ~d~~~~~~~~~~~~-~~~~---~~~~~~~~g~~l~~~~~~---------~~~l~~~d~~~~~ 106 (300)
T TIGR03866 58 IDLATGEVIGTLPS-GPDP---ELFALHPNGKILYIANED---------DNLVTVIDIETRK 106 (300)
T ss_pred EECCCCcEEEeccC-CCCc---cEEEECCCCCEEEEEcCC---------CCeEEEEECCCCe
Confidence 99988776542221 1111 222332 3456665432 2468889987753
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=2.7 Score=46.76 Aligned_cols=147 Identities=10% Similarity=0.014 Sum_probs=80.2
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (643)
..+|++|+.+++-+.++... ..-...++..-+..|++...... ..++|++|+.+++.+.+... ..
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~--g~~~~~~wSPDG~~La~~~~~~g---------~~~Iy~~dl~tg~~~~lt~~--~~-- 306 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFP--GINGAPRFSPDGKKLALVLSKDG---------QPEIYVVDIATKALTRITRH--RA-- 306 (448)
T ss_pred cEEEEEECCCCCeEEecCCC--CCcCCeeECCCCCEEEEEEeCCC---------CeEEEEEECCCCCeEECccC--CC--
Confidence 47999999988877775421 11111122222455665533211 25799999999998877542 11
Q ss_pred ceeEEEEE--CC-EEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCC
Q 006473 181 SGHRMVLY--KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKE 257 (643)
Q Consensus 181 s~h~~~~~--~~-~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~ 257 (643)
......+ ++ +|++.....+ ...+|++|+.+.++..+.... ... ...+....+..|++.+.. ..
T Consensus 307 -~~~~p~wSpDG~~I~f~s~~~g-------~~~Iy~~dl~~g~~~~Lt~~g----~~~-~~~~~SpDG~~l~~~~~~-~g 372 (448)
T PRK04792 307 -IDTEPSWHPDGKSLIFTSERGG-------KPQIYRVNLASGKVSRLTFEG----EQN-LGGSITPDGRSMIMVNRT-NG 372 (448)
T ss_pred -CccceEECCCCCEEEEEECCCC-------CceEEEEECCCCCEEEEecCC----CCC-cCeeECCCCCEEEEEEec-CC
Confidence 1111222 33 4544332111 257999999999888875331 111 112222234455554322 11
Q ss_pred CCCccCCCCCCceeeeEEEEeCCCCeeEEecc
Q 006473 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (643)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~ 289 (643)
...+|.+|+.+.....+..
T Consensus 373 -------------~~~I~~~dl~~g~~~~lt~ 391 (448)
T PRK04792 373 -------------KFNIARQDLETGAMQVLTS 391 (448)
T ss_pred -------------ceEEEEEECCCCCeEEccC
Confidence 1358999998888777653
|
|
| >cd00094 HX Hemopexin-like repeats | Back alignment and domain information |
|---|
Probab=94.68 E-value=2.6 Score=41.19 Aligned_cols=153 Identities=17% Similarity=0.263 Sum_probs=77.7
Q ss_pred EEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCc--EEEeccCCCC-CCCceeEEEEEC--CEEEEEeeeecCCC
Q 006473 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGCP-SPRSGHRMVLYK--HKIIVFGGFYDTLR 203 (643)
Q Consensus 129 a~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g~P-~~Rs~h~~~~~~--~~lyvfGG~~~~~~ 203 (643)
+++...+.+|+|-| +.+|+|+..... -..+.. ..| .+..-.++..+. +++|+|-|
T Consensus 11 A~~~~~g~~y~FkG-------------~~~w~~~~~~~~~~p~~I~~-~w~~~p~~IDAa~~~~~~~~~yfFkg------ 70 (194)
T cd00094 11 AVTTLRGELYFFKG-------------RYFWRLSPGKPPGSPFLISS-FWPSLPSPVDAAFERPDTGKIYFFKG------ 70 (194)
T ss_pred eEEEeCCEEEEEeC-------------CEEEEEeCCCCCCCCeEhhh-hCCCCCCCccEEEEECCCCEEEEECC------
Confidence 33444699999987 357888765221 122211 012 122223344443 79999976
Q ss_pred ceeeeccEEEEEcCCCceEEeccCCC-CCCCC-CccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCC
Q 006473 204 EVRYYNDLYVFDLDQFKWQEIKPRFG-SMWPS-PRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR 280 (643)
Q Consensus 204 ~~~~~~dv~~yD~~t~~W~~v~~~~~-~~~P~-~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~ 280 (643)
+.+|+|+..+..+........ +.++. .....++... ++++|+|-|. ..|+|+..
T Consensus 71 -----~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~------------------~y~ry~~~ 127 (194)
T cd00094 71 -----DKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD------------------KYWRYDEK 127 (194)
T ss_pred -----CEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC------------------EEEEEeCC
Confidence 357788765422211111110 11111 2222223222 6899999874 26788865
Q ss_pred CCeeEEe-----cc--CCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 281 TWEWSKV-----KK--IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 281 t~~W~~l-----~~--~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
..+...- .. +| .|. ..-+++...++++|+|-|. .+|+||..+.+
T Consensus 128 ~~~v~~~yP~~i~~~w~g-~p~-~idaa~~~~~~~~yfF~g~----------------~y~~~d~~~~~ 178 (194)
T cd00094 128 TQKMDPGYPKLIETDFPG-VPD-KVDAAFRWLDGYYYFFKGD----------------QYWRFDPRSKE 178 (194)
T ss_pred CccccCCCCcchhhcCCC-cCC-CcceeEEeCCCcEEEEECC----------------EEEEEeCccce
Confidence 5443211 00 11 122 1222333334899999884 48999988766
|
; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat. |
| >PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.94 Score=48.51 Aligned_cols=125 Identities=15% Similarity=0.170 Sum_probs=72.3
Q ss_pred ECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCC
Q 006473 188 YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEK 267 (643)
Q Consensus 188 ~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~ 267 (643)
.+++|+..+.. ....+||+.+..-...+.+ +.+.....++.+++.||++........ ....
T Consensus 75 ~gskIv~~d~~----------~~t~vyDt~t~av~~~P~l-----~~pk~~pisv~VG~~LY~m~~~~~~~~--~~~~-- 135 (342)
T PF07893_consen 75 HGSKIVAVDQS----------GRTLVYDTDTRAVATGPRL-----HSPKRCPISVSVGDKLYAMDRSPFPEP--AGRP-- 135 (342)
T ss_pred cCCeEEEEcCC----------CCeEEEECCCCeEeccCCC-----CCCCcceEEEEeCCeEEEeeccCcccc--ccCc--
Confidence 48899888553 3478999998865544443 445555566667888999988754300 0000
Q ss_pred CceeeeEEEEe--------CCCCeeEEeccCCCCCCCce-------eeEEEEE-CCeEEE-eccccccccCccccccccC
Q 006473 268 GIIHSDLWSLD--------PRTWEWSKVKKIGMPPGPRA-------GFSMCVH-KKRALL-FGGVVDMEMKGDVIMSLFL 330 (643)
Q Consensus 268 ~~~~~dv~~yd--------~~t~~W~~l~~~g~~P~~R~-------g~s~~~~-~~~iyv-fGG~~~~~~~~~~~~~~~~ 330 (643)
....-.+..|+ .....|..++.+ |-.+. -.+-+++ +..|+| .-|..
T Consensus 136 ~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~P---Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-------------- 198 (342)
T PF07893_consen 136 DFPCFEALVYRPPPDDPSPEESWSWRSLPPP---PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-------------- 198 (342)
T ss_pred cceeEEEeccccccccccCCCcceEEcCCCC---CccccCCcccceEEEEEEecCCeEEEEecCCc--------------
Confidence 00011222333 345577777543 32221 2344555 566776 44321
Q ss_pred CcEEEEECCCCcEEEeEe
Q 006473 331 NELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 331 ndl~~yd~~t~~W~~l~~ 348 (643)
.-.|.||+.+.+|+.+..
T Consensus 199 ~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 199 WGTYSFDTESHEWRKHGD 216 (342)
T ss_pred eEEEEEEcCCcceeeccc
Confidence 127999999999999854
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.52 E-value=7.9 Score=41.29 Aligned_cols=156 Identities=12% Similarity=0.080 Sum_probs=77.6
Q ss_pred CCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE
Q 006473 110 KQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY 188 (643)
Q Consensus 110 ~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~ 188 (643)
-.+|+.+..+. ..+...+.+.++ ++.+|+.|.. ..+++-+-.-.+|+.+.. +..-+-+.+...
T Consensus 118 G~tW~~~~~~~-~~~~~~~~i~~~~~~~~~~~g~~------------G~i~~S~DgG~tW~~~~~---~~~g~~~~i~~~ 181 (334)
T PRK13684 118 GKNWTRIPLSE-KLPGSPYLITALGPGTAEMATNV------------GAIYRTTDGGKNWEALVE---DAAGVVRNLRRS 181 (334)
T ss_pred CCCCeEccCCc-CCCCCceEEEEECCCcceeeecc------------ceEEEECCCCCCceeCcC---CCcceEEEEEEC
Confidence 34899886431 122233334444 4456666542 235555445679998865 223344555555
Q ss_pred CCEEEEEeeeecCCCceeeeccEEE-EEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCC
Q 006473 189 KHKIIVFGGFYDTLREVRYYNDLYV-FDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSE 266 (643)
Q Consensus 189 ~~~lyvfGG~~~~~~~~~~~~dv~~-yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~ 266 (643)
.+..|+..|..+ .++. .+....+|+.+... ..+.-++++.. ++.++++|... .
T Consensus 182 ~~g~~v~~g~~G---------~i~~s~~~gg~tW~~~~~~------~~~~l~~i~~~~~g~~~~vg~~G-~--------- 236 (334)
T PRK13684 182 PDGKYVAVSSRG---------NFYSTWEPGQTAWTPHQRN------SSRRLQSMGFQPDGNLWMLARGG-Q--------- 236 (334)
T ss_pred CCCeEEEEeCCc---------eEEEEcCCCCCeEEEeeCC------CcccceeeeEcCCCCEEEEecCC-E---------
Confidence 444444444221 1222 23334579887543 33444444444 67788887542 1
Q ss_pred CCceeeeEEEE--eCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccc
Q 006473 267 KGIIHSDLWSL--DPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGV 315 (643)
Q Consensus 267 ~~~~~~dv~~y--d~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~ 315 (643)
.++ +-...+|+.+... .......-+++++. .+.+|++|..
T Consensus 237 --------~~~~s~d~G~sW~~~~~~-~~~~~~~l~~v~~~~~~~~~~~G~~ 279 (334)
T PRK13684 237 --------IRFNDPDDLESWSKPIIP-EITNGYGYLDLAYRTPGEIWAGGGN 279 (334)
T ss_pred --------EEEccCCCCCccccccCC-ccccccceeeEEEcCCCCEEEEcCC
Confidence 123 2234589976431 00011223344444 5678888753
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=94.44 E-value=11 Score=42.50 Aligned_cols=122 Identities=14% Similarity=0.196 Sum_probs=62.3
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCC--cEEEecCCC--CCCCc-eeeEEEEEC-CEEEEEeCccCCCCCCccee
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPN--SPPPR-SAHQAVSWK-NYLYIFGGEFTSPNQERFHH 154 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~--~P~pR-s~ha~~~~~-~~iyvfGG~~~~~~~~~~~~ 154 (643)
++.||+.... ..|+.+|..+. .|+.-.... .+.+. ....++..+ +.||+...
T Consensus 61 ~g~vy~~~~~----------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~------------ 118 (488)
T cd00216 61 DGDMYFTTSH----------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF------------ 118 (488)
T ss_pred CCEEEEeCCC----------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC------------
Confidence 6888876541 47899999876 488533211 00010 111223445 77776432
Q ss_pred cCeEEEEECCCCc--EEEeccCCC-CCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc--eEEec
Q 006473 155 YKDFWMLDLKTNQ--WEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIK 225 (643)
Q Consensus 155 ~~dv~~yD~~t~~--W~~~~~~g~-P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~ 225 (643)
-..++.||..|.+ |+.-..... +......+.++.++.+|+ |..............|+.||..+.+ |+.-.
T Consensus 119 ~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 119 DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 2468899988764 876432110 000012233555666664 4321110000124578999998754 87644
|
The alignment model contains an 8-bladed beta-propeller. |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=4.5 Score=44.69 Aligned_cols=148 Identities=13% Similarity=0.075 Sum_probs=74.9
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeEEEEECC-EEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~-~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (643)
..+|++|+.++....+.. .+...... ...-++ +|++.....+ ..++|++|+.+.....+... +.
T Consensus 226 ~~i~~~dl~~g~~~~l~~--~~g~~~~~-~~SPDG~~la~~~~~~g-------~~~Iy~~d~~~~~~~~Lt~~-----~~ 290 (435)
T PRK05137 226 PRVYLLDLETGQRELVGN--FPGMTFAP-RFSPDGRKVVMSLSQGG-------NTDIYTMDLRSGTTTRLTDS-----PA 290 (435)
T ss_pred CEEEEEECCCCcEEEeec--CCCcccCc-EECCCCCEEEEEEecCC-------CceEEEEECCCCceEEccCC-----CC
Confidence 579999999988877754 22211111 111234 4544332211 35799999998877766543 11
Q ss_pred CccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEecc
Q 006473 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314 (643)
Q Consensus 235 ~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG 314 (643)
.-...+....+..|++.....+ ...+|++|+.+.....+... + .+.......-+++.++|..
T Consensus 291 ~~~~~~~spDG~~i~f~s~~~g--------------~~~Iy~~d~~g~~~~~lt~~---~-~~~~~~~~SpdG~~ia~~~ 352 (435)
T PRK05137 291 IDTSPSYSPDGSQIVFESDRSG--------------SPQLYVMNADGSNPRRISFG---G-GRYSTPVWSPRGDLIAFTK 352 (435)
T ss_pred ccCceeEcCCCCEEEEEECCCC--------------CCeEEEEECCCCCeEEeecC---C-CcccCeEECCCCCEEEEEE
Confidence 1111222222444544322111 24689999888777776532 1 1111111112444444433
Q ss_pred ccccccCccccccccCCcEEEEECCCCcEEEeE
Q 006473 315 VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (643)
Q Consensus 315 ~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (643)
... . ...|+++|+.+.....+.
T Consensus 353 ~~~---------~--~~~i~~~d~~~~~~~~lt 374 (435)
T PRK05137 353 QGG---------G--QFSIGVMKPDGSGERILT 374 (435)
T ss_pred cCC---------C--ceEEEEEECCCCceEecc
Confidence 211 0 246899998776655443
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=94.38 E-value=6.3 Score=42.92 Aligned_cols=148 Identities=11% Similarity=0.005 Sum_probs=77.9
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (643)
..+|+||+.++....+.... ......++..-+..|++...... ..++|.+|+.+.....+... +...
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~--~~~~~~~~spDg~~l~~~~~~~~---------~~~i~~~d~~~~~~~~l~~~--~~~~ 280 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFP--GMNGAPAFSPDGSKLAVSLSKDG---------NPDIYVMDLDGKQLTRLTNG--PGID 280 (417)
T ss_pred cEEEEEECCCCCEEEeecCC--CCccceEECCCCCEEEEEECCCC---------CccEEEEECCCCCEEECCCC--CCCC
Confidence 47899999988776665321 11222111112345655433211 25799999998887777542 1111
Q ss_pred ceeEEEEECC-EEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCC
Q 006473 181 SGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEV 258 (643)
Q Consensus 181 s~h~~~~~~~-~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~ 258 (643)
... ....++ +|++.....+ ...+|++|+.+..+..+.... ......... ++..+++......
T Consensus 281 ~~~-~~s~dg~~l~~~s~~~g-------~~~iy~~d~~~~~~~~l~~~~-------~~~~~~~~spdg~~i~~~~~~~~- 344 (417)
T TIGR02800 281 TEP-SWSPDGKSIAFTSDRGG-------SPQIYMMDADGGEVRRLTFRG-------GYNASPSWSPDGDLIAFVHREGG- 344 (417)
T ss_pred CCE-EECCCCCEEEEEECCCC-------CceEEEEECCCCCEEEeecCC-------CCccCeEECCCCCEEEEEEccCC-
Confidence 111 111244 4444322111 247999999888887765431 111222222 4555555443221
Q ss_pred CCccCCCCCCceeeeEEEEeCCCCeeEEecc
Q 006473 259 STDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (643)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~ 289 (643)
...++.+|+.+..+..+..
T Consensus 345 ------------~~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 345 ------------GFNIAVMDLDGGGERVLTD 363 (417)
T ss_pred ------------ceEEEEEeCCCCCeEEccC
Confidence 2458999998876666643
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=6 Score=43.71 Aligned_cols=185 Identities=10% Similarity=-0.014 Sum_probs=94.6
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (643)
..+|++|+.+++-+.++... ..........-+..|++...... ..++|++|+.++....+... +. .
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~--g~~~~~~~SpDG~~l~~~~s~~g---------~~~Iy~~d~~~g~~~~lt~~--~~-~ 293 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFR--GINGAPSFSPDGRRLALTLSRDG---------NPEIYVMDLGSRQLTRLTNH--FG-I 293 (433)
T ss_pred cEEEEEECCCCCEEEeccCC--CCccCceECCCCCEEEEEEeCCC---------CceEEEEECCCCCeEECccC--CC-C
Confidence 46899999998887775421 11111111111445554432211 24799999999887766431 11 1
Q ss_pred ceeEEEE-ECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCC
Q 006473 181 SGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVS 259 (643)
Q Consensus 181 s~h~~~~-~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~ 259 (643)
...... -+++-++|..... + ...+|.+|+.+..+..+... .......+....+..|++..+..+.
T Consensus 294 -~~~~~~spDG~~l~f~sd~~-g-----~~~iy~~dl~~g~~~~lt~~-----g~~~~~~~~SpDG~~Ia~~~~~~~~-- 359 (433)
T PRK04922 294 -DTEPTWAPDGKSIYFTSDRG-G-----RPQIYRVAASGGSAERLTFQ-----GNYNARASVSPDGKKIAMVHGSGGQ-- 359 (433)
T ss_pred -ccceEECCCCCEEEEEECCC-C-----CceEEEEECCCCCeEEeecC-----CCCccCEEECCCCCEEEEEECCCCc--
Confidence 111122 2444333432111 1 24799999988888777643 1111112222235566655442211
Q ss_pred CccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECC
Q 006473 260 TDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD 339 (643)
Q Consensus 260 ~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~ 339 (643)
..++++|+.+..+..+...+ .. ... ...-+++.++|..... -...||.+++.
T Consensus 360 ------------~~I~v~d~~~g~~~~Lt~~~---~~-~~p-~~spdG~~i~~~s~~~-----------g~~~L~~~~~~ 411 (433)
T PRK04922 360 ------------YRIAVMDLSTGSVRTLTPGS---LD-ESP-SFAPNGSMVLYATREG-----------GRGVLAAVSTD 411 (433)
T ss_pred ------------eeEEEEECCCCCeEECCCCC---CC-CCc-eECCCCCEEEEEEecC-----------CceEEEEEECC
Confidence 26899999888877665321 10 111 1223566666654321 12458888886
Q ss_pred CC
Q 006473 340 NH 341 (643)
Q Consensus 340 t~ 341 (643)
..
T Consensus 412 g~ 413 (433)
T PRK04922 412 GR 413 (433)
T ss_pred CC
Confidence 53
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=94.28 E-value=5.3 Score=43.95 Aligned_cols=146 Identities=11% Similarity=0.090 Sum_probs=78.7
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--C-CEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--K-HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~-~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~ 232 (643)
..+|++|+.+++-+.+... +. . .....+ + ++|++.....+ ..++|++|+.+.....+...
T Consensus 223 ~~l~~~~l~~g~~~~l~~~--~g--~-~~~~~~SpDG~~la~~~~~~g-------~~~Iy~~d~~~~~~~~lt~~----- 285 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNF--EG--L-NGAPAWSPDGSKLAFVLSKDG-------NPEIYVMDLASRQLSRVTNH----- 285 (430)
T ss_pred CEEEEEECCCCCEEEccCC--CC--C-cCCeEECCCCCEEEEEEccCC-------CceEEEEECCCCCeEEcccC-----
Confidence 4799999999887776541 11 1 112223 3 34544322111 25799999999988777543
Q ss_pred CCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEE-ECCeEEE
Q 006473 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRALL 311 (643)
Q Consensus 233 P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~-~~~~iyv 311 (643)
+..-..+.....+..|++.....+ ...+|.+++.+..+.++...+ .......+ -+++.++
T Consensus 286 ~~~~~~~~~spDg~~i~f~s~~~g--------------~~~iy~~d~~~g~~~~lt~~~-----~~~~~~~~Spdg~~i~ 346 (430)
T PRK00178 286 PAIDTEPFWGKDGRTLYFTSDRGG--------------KPQIYKVNVNGGRAERVTFVG-----NYNARPRLSADGKTLV 346 (430)
T ss_pred CCCcCCeEECCCCCEEEEEECCCC--------------CceEEEEECCCCCEEEeecCC-----CCccceEECCCCCEEE
Confidence 111112222222445555432211 236899999888888775321 11111222 2444444
Q ss_pred eccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
|....+ + ...|+.+|+.+..+..+..
T Consensus 347 ~~~~~~---------~--~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 347 MVHRQD---------G--NFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred EEEccC---------C--ceEEEEEECCCCCEEEccC
Confidence 433221 1 2359999999988776654
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=94.24 E-value=4.4 Score=44.77 Aligned_cols=145 Identities=9% Similarity=0.074 Sum_probs=76.3
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeEEEEE---CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~---~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~ 232 (643)
..+|++|+.+++...+.. .+.. . ....+ +.+|++.....+ ..++|++|+.+....++...
T Consensus 228 ~~l~~~dl~~g~~~~l~~--~~g~-~--~~~~~SpDG~~l~~~~s~~g-------~~~Iy~~d~~~g~~~~lt~~----- 290 (433)
T PRK04922 228 SAIYVQDLATGQRELVAS--FRGI-N--GAPSFSPDGRRLALTLSRDG-------NPEIYVMDLGSRQLTRLTNH----- 290 (433)
T ss_pred cEEEEEECCCCCEEEecc--CCCC-c--cCceECCCCCEEEEEEeCCC-------CceEEEEECCCCCeEECccC-----
Confidence 569999999888777654 2211 1 12222 335554332211 25799999998876665433
Q ss_pred CCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEE
Q 006473 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALL 311 (643)
Q Consensus 233 P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyv 311 (643)
+..-...+....+..|++.....+ ..++|.++..+..+.++...+ ....+.++. +++.++
T Consensus 291 ~~~~~~~~~spDG~~l~f~sd~~g--------------~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia 351 (433)
T PRK04922 291 FGIDTEPTWAPDGKSIYFTSDRGG--------------RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIA 351 (433)
T ss_pred CCCccceEECCCCCEEEEEECCCC--------------CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEE
Confidence 111112222222344544432221 136999999888887775422 111122222 444444
Q ss_pred eccccccccCccccccccCCcEEEEECCCCcEEEeE
Q 006473 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (643)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (643)
|....+ . -..|++||+.++.+..+.
T Consensus 352 ~~~~~~---------~--~~~I~v~d~~~g~~~~Lt 376 (433)
T PRK04922 352 MVHGSG---------G--QYRIAVMDLSTGSVRTLT 376 (433)
T ss_pred EEECCC---------C--ceeEEEEECCCCCeEECC
Confidence 432211 0 136999999988877554
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=94.17 E-value=8.9 Score=42.17 Aligned_cols=183 Identities=5% Similarity=-0.010 Sum_probs=93.7
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (643)
..+|++++.+++-+.+.... . ...+.... +..|++..-... ..++|++|+.+..++.+... +.
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~--g--~~~~~~~SpDG~~la~~~~~~g---------~~~Iy~~d~~~~~~~~lt~~--~~ 287 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFE--G--LNGAPAWSPDGSKLAFVLSKDG---------NPEIYVMDLASRQLSRVTNH--PA 287 (430)
T ss_pred CEEEEEECCCCCEEEccCCC--C--CcCCeEECCCCCEEEEEEccCC---------CceEEEEECCCCCeEEcccC--CC
Confidence 47999999998888775422 1 11111121 345544322111 25799999999998877541 11
Q ss_pred CCceeEEEEEC-CEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCC
Q 006473 179 PRSGHRMVLYK-HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKE 257 (643)
Q Consensus 179 ~Rs~h~~~~~~-~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~ 257 (643)
........-+ ..||+.... . + ...+|.+|+.+..+..+.... ...........+..|++.....+
T Consensus 288 -~~~~~~~spDg~~i~f~s~~-~-g-----~~~iy~~d~~~g~~~~lt~~~-----~~~~~~~~Spdg~~i~~~~~~~~- 353 (430)
T PRK00178 288 -IDTEPFWGKDGRTLYFTSDR-G-G-----KPQIYKVNVNGGRAERVTFVG-----NYNARPRLSADGKTLVMVHRQDG- 353 (430)
T ss_pred -CcCCeEECCCCCEEEEEECC-C-C-----CceEEEEECCCCCEEEeecCC-----CCccceEECCCCCEEEEEEccCC-
Confidence 1111111113 345543211 1 1 347999999988888775431 00011112222455555443211
Q ss_pred CCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEE
Q 006473 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQ 337 (643)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd 337 (643)
...++.+|+.+..+..+...+. . ... ...-+++.++|...... ...|+.++
T Consensus 354 -------------~~~l~~~dl~tg~~~~lt~~~~---~-~~p-~~spdg~~i~~~~~~~g-----------~~~l~~~~ 404 (430)
T PRK00178 354 -------------NFHVAAQDLQRGSVRILTDTSL---D-ESP-SVAPNGTMLIYATRQQG-----------RGVLMLVS 404 (430)
T ss_pred -------------ceEEEEEECCCCCEEEccCCCC---C-CCc-eECCCCCEEEEEEecCC-----------ceEEEEEE
Confidence 1359999999888877754211 1 111 12225666666543220 23477777
Q ss_pred CCCC
Q 006473 338 LDNH 341 (643)
Q Consensus 338 ~~t~ 341 (643)
+..+
T Consensus 405 ~~g~ 408 (430)
T PRK00178 405 INGR 408 (430)
T ss_pred CCCC
Confidence 7543
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=7 Score=43.21 Aligned_cols=149 Identities=10% Similarity=0.028 Sum_probs=77.0
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeEEEEECC-EEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~-~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (643)
..+|++|+.+++-+.+.. .+.. .+.....-++ +|++.....+ ...+|++|+.+....++... +.
T Consensus 223 ~~i~i~dl~~G~~~~l~~--~~~~-~~~~~~SPDG~~La~~~~~~g-------~~~I~~~d~~tg~~~~lt~~-----~~ 287 (429)
T PRK03629 223 SALVIQTLANGAVRQVAS--FPRH-NGAPAFSPDGSKLAFALSKTG-------SLNLYVMDLASGQIRQVTDG-----RS 287 (429)
T ss_pred cEEEEEECCCCCeEEccC--CCCC-cCCeEECCCCCEEEEEEcCCC-------CcEEEEEECCCCCEEEccCC-----CC
Confidence 468999998887666643 1211 1111111134 5554433211 23699999998887776543 11
Q ss_pred CccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEecc
Q 006473 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314 (643)
Q Consensus 235 ~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG 314 (643)
.-........+..|++.....+ ...+|.+++.+....++...+. ........-+++.++|.+
T Consensus 288 ~~~~~~wSPDG~~I~f~s~~~g--------------~~~Iy~~d~~~g~~~~lt~~~~----~~~~~~~SpDG~~Ia~~~ 349 (429)
T PRK03629 288 NNTEPTWFPDSQNLAYTSDQAG--------------RPQVYKVNINGGAPQRITWEGS----QNQDADVSSDGKFMVMVS 349 (429)
T ss_pred CcCceEECCCCCEEEEEeCCCC--------------CceEEEEECCCCCeEEeecCCC----CccCEEECCCCCEEEEEE
Confidence 1122222222444444332211 1368999988877666643211 111111122455555544
Q ss_pred ccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 315 VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 315 ~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
... -...|+++|+.++.+..|..
T Consensus 350 ~~~-----------g~~~I~~~dl~~g~~~~Lt~ 372 (429)
T PRK03629 350 SNG-----------GQQHIAKQDLATGGVQVLTD 372 (429)
T ss_pred ccC-----------CCceEEEEECCCCCeEEeCC
Confidence 321 02469999999998877663
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=8.6 Score=40.50 Aligned_cols=94 Identities=10% Similarity=0.080 Sum_probs=43.9
Q ss_pred ccEEEEECC-CCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCC--cEEEeccCC
Q 006473 101 GDLYRYDVE-KQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQLNLKG 175 (643)
Q Consensus 101 ndv~~yd~~-~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~--~W~~~~~~g 175 (643)
+.+..|++. ++.+..+.... .+..-+.++.. +..||+..-. -+.+..|++.++ ....+..
T Consensus 57 ~~i~~~~~~~~g~l~~~~~~~--~~~~p~~i~~~~~g~~l~v~~~~-----------~~~v~v~~~~~~g~~~~~~~~-- 121 (330)
T PRK11028 57 FRVLSYRIADDGALTFAAESP--LPGSPTHISTDHQGRFLFSASYN-----------ANCVSVSPLDKDGIPVAPIQI-- 121 (330)
T ss_pred CcEEEEEECCCCceEEeeeec--CCCCceEEEECCCCCEEEEEEcC-----------CCeEEEEEECCCCCCCCceee--
Confidence 466677775 45666543221 11111223333 4456665421 145666766532 1112211
Q ss_pred CCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCC
Q 006473 176 CPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (643)
Q Consensus 176 ~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t 218 (643)
.+....-|.+++. ++++|+..- ..+.|++||+.+
T Consensus 122 ~~~~~~~~~~~~~p~g~~l~v~~~---------~~~~v~v~d~~~ 157 (330)
T PRK11028 122 IEGLEGCHSANIDPDNRTLWVPCL---------KEDRIRLFTLSD 157 (330)
T ss_pred ccCCCcccEeEeCCCCCEEEEeeC---------CCCEEEEEEECC
Confidence 1222223554444 346665432 146789999876
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=93.96 E-value=5.1 Score=43.65 Aligned_cols=146 Identities=15% Similarity=0.080 Sum_probs=79.0
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-C-CEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWP 233 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~-~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P 233 (643)
..++++|+.++....+.. .+..... .+.. + +.|++.....+ ...+|.+|+.+.....+....
T Consensus 214 ~~i~v~d~~~g~~~~~~~--~~~~~~~--~~~spDg~~l~~~~~~~~-------~~~i~~~d~~~~~~~~l~~~~----- 277 (417)
T TIGR02800 214 PEIYVQDLATGQREKVAS--FPGMNGA--PAFSPDGSKLAVSLSKDG-------NPDIYVMDLDGKQLTRLTNGP----- 277 (417)
T ss_pred cEEEEEECCCCCEEEeec--CCCCccc--eEECCCCCEEEEEECCCC-------CccEEEEECCCCCEEECCCCC-----
Confidence 578999999887666543 2211111 2222 3 35555433211 357999999988777765431
Q ss_pred CCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEE-ECCeEEEe
Q 006473 234 SPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRALLF 312 (643)
Q Consensus 234 ~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~-~~~~iyvf 312 (643)
...........+..|++.....+ ...+|.+++.+..+..+...+ ......++ -+++.+++
T Consensus 278 ~~~~~~~~s~dg~~l~~~s~~~g--------------~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~ 338 (417)
T TIGR02800 278 GIDTEPSWSPDGKSIAFTSDRGG--------------SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAF 338 (417)
T ss_pred CCCCCEEECCCCCEEEEEECCCC--------------CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEE
Confidence 11111122222344554433221 136899999888887775422 11222222 25666666
Q ss_pred ccccccccCccccccccCCcEEEEECCCCcEEEeE
Q 006473 313 GGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (643)
Q Consensus 313 GG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (643)
..... -...|+.+|+.+..+..+.
T Consensus 339 ~~~~~-----------~~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 339 VHREG-----------GGFNIAVMDLDGGGERVLT 362 (417)
T ss_pred EEccC-----------CceEEEEEeCCCCCeEEcc
Confidence 55422 1246999999987665554
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=93.52 E-value=8.2 Score=42.60 Aligned_cols=145 Identities=11% Similarity=0.081 Sum_probs=74.0
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CC-EEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~-~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~ 232 (643)
..+|++|+.+++=..+.. .+. ...+..+ ++ +|++.....+ ..++|.+|+.+.....+...
T Consensus 220 ~~I~~~dl~~g~~~~l~~--~~g---~~~~~~~SPDG~~la~~~~~~g-------~~~Iy~~d~~~~~~~~lt~~----- 282 (427)
T PRK02889 220 PVVYVHDLATGRRRVVAN--FKG---SNSAPAWSPDGRTLAVALSRDG-------NSQIYTVNADGSGLRRLTQS----- 282 (427)
T ss_pred cEEEEEECCCCCEEEeec--CCC---CccceEECCCCCEEEEEEccCC-------CceEEEEECCCCCcEECCCC-----
Confidence 469999998887555543 121 1112233 34 5544333221 36799999887776665432
Q ss_pred CCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEE-ECCeEEE
Q 006473 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRALL 311 (643)
Q Consensus 233 P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~-~~~~iyv 311 (643)
.......+....+..|++.....+ ...+|.++..+....++...+ ....+.++ -+++.++
T Consensus 283 ~~~~~~~~wSpDG~~l~f~s~~~g--------------~~~Iy~~~~~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 283 SGIDTEPFFSPDGRSIYFTSDRGG--------------APQIYRMPASGGAAQRVTFTG-----SYNTSPRISPDGKLLA 343 (427)
T ss_pred CCCCcCeEEcCCCCEEEEEecCCC--------------CcEEEEEECCCCceEEEecCC-----CCcCceEECCCCCEEE
Confidence 111112222222444554332111 136899998877777765321 11112222 2454444
Q ss_pred eccccccccCccccccccCCcEEEEECCCCcEEEeE
Q 006473 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (643)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (643)
|..... . ...|+++|+.+.....+.
T Consensus 344 ~~s~~~---------g--~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 344 YISRVG---------G--AFKLYVQDLATGQVTALT 368 (427)
T ss_pred EEEccC---------C--cEEEEEEECCCCCeEEcc
Confidence 443221 0 136999999988766554
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.95 Score=46.95 Aligned_cols=112 Identities=17% Similarity=0.283 Sum_probs=69.8
Q ss_pred eccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEE
Q 006473 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (643)
Q Consensus 208 ~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (643)
+..|..||+.+.+|..+..- -.+ .-.++... +++|||.|-..-. +.....+-.||..+.+|+.
T Consensus 15 C~~lC~yd~~~~qW~~~g~~-----i~G-~V~~l~~~~~~~Llv~G~ft~~----------~~~~~~la~yd~~~~~w~~ 78 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNG-----ISG-TVTDLQWASNNQLLVGGNFTLN----------GTNSSNLATYDFKNQTWSS 78 (281)
T ss_pred CCEEEEEECCCCEeecCCCC-----ceE-EEEEEEEecCCEEEEEEeeEEC----------CCCceeEEEEecCCCeeee
Confidence 78899999999999988654 122 12233333 7777777754433 1134458899999999999
Q ss_pred eccC--CCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 287 VKKI--GMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 287 l~~~--g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
+... ...|.+....+.... ...+++.|.... -..-|..| +..+|..+..
T Consensus 79 ~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~-----------g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 79 LGGGSSNSIPGPVTALTFISNDGSNFWVAGRSAN-----------GSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred cCCcccccCCCcEEEEEeeccCCceEEEeceecC-----------CCceEEEE--cCCceEeccc
Confidence 8762 234555433333323 356777776521 02235555 6779999987
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=93.25 E-value=8.9 Score=37.51 Aligned_cols=70 Identities=10% Similarity=0.077 Sum_probs=35.2
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCc
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~ 151 (643)
.+...+ ++..+++|+. .+.+++|++.+......-.. ....-.++... ++.+++.|+.
T Consensus 56 ~~~~~~--~~~~l~~~~~---------~~~i~i~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~-------- 113 (289)
T cd00200 56 DVAASA--DGTYLASGSS---------DKTIRLWDLETGECVRTLTG---HTSYVSSVAFSPDGRILSSSSR-------- 113 (289)
T ss_pred EEEECC--CCCEEEEEcC---------CCeEEEEEcCcccceEEEec---cCCcEEEEEEcCCCCEEEEecC--------
Confidence 344443 4556666662 24788888887532221111 11112222233 3456666652
Q ss_pred ceecCeEEEEECCCCc
Q 006473 152 FHHYKDFWMLDLKTNQ 167 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~ 167 (643)
-..+.+||+.+..
T Consensus 114 ---~~~i~~~~~~~~~ 126 (289)
T cd00200 114 ---DKTIKVWDVETGK 126 (289)
T ss_pred ---CCeEEEEECCCcE
Confidence 1457888887554
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=92.92 E-value=18 Score=40.02 Aligned_cols=185 Identities=10% Similarity=-0.012 Sum_probs=95.0
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (643)
..+|++++.+++-+.+.... ..-....+..-+..|++...... ..++|++|+.+....++... +
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~--~~~~~~~~SPDG~~La~~~~~~g---------~~~I~~~d~~tg~~~~lt~~--~--- 286 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFP--RHNGAPAFSPDGSKLAFALSKTG---------SLNLYVMDLASGQIRQVTDG--R--- 286 (429)
T ss_pred cEEEEEECCCCCeEEccCCC--CCcCCeEECCCCCEEEEEEcCCC---------CcEEEEEECCCCCEEEccCC--C---
Confidence 46899999888777765421 11111111111445655433211 24699999999888777542 1
Q ss_pred ceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCC
Q 006473 181 SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEV 258 (643)
Q Consensus 181 s~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~ 258 (643)
.......+ +++.++|..... + ...+|.+|+.+..-..+... ........+...+..|++.+...+
T Consensus 287 ~~~~~~~wSPDG~~I~f~s~~~-g-----~~~Iy~~d~~~g~~~~lt~~-----~~~~~~~~~SpDG~~Ia~~~~~~g-- 353 (429)
T PRK03629 287 SNNTEPTWFPDSQNLAYTSDQA-G-----RPQVYKVNINGGAPQRITWE-----GSQNQDADVSSDGKFMVMVSSNGG-- 353 (429)
T ss_pred CCcCceEECCCCCEEEEEeCCC-C-----CceEEEEECCCCCeEEeecC-----CCCccCEEECCCCCEEEEEEccCC--
Confidence 12223333 444444433211 1 24789999988776666432 111111222222444544443221
Q ss_pred CCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEEC
Q 006473 259 STDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQL 338 (643)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~ 338 (643)
...++.+|+.+..+..+..... . ...+ ..-+++.++|.+.... ...|++.++
T Consensus 354 ------------~~~I~~~dl~~g~~~~Lt~~~~--~--~~p~-~SpDG~~i~~~s~~~~-----------~~~l~~~~~ 405 (429)
T PRK03629 354 ------------QQHIAKQDLATGGVQVLTDTFL--D--ETPS-IAPNGTMVIYSSSQGM-----------GSVLNLVST 405 (429)
T ss_pred ------------CceEEEEECCCCCeEEeCCCCC--C--CCce-ECCCCCEEEEEEcCCC-----------ceEEEEEEC
Confidence 1358899999988887764210 0 1111 2246777777665321 234677776
Q ss_pred CCCc
Q 006473 339 DNHR 342 (643)
Q Consensus 339 ~t~~ 342 (643)
+...
T Consensus 406 ~G~~ 409 (429)
T PRK03629 406 DGRF 409 (429)
T ss_pred CCCC
Confidence 5443
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=92.81 E-value=10 Score=37.05 Aligned_cols=105 Identities=14% Similarity=0.134 Sum_probs=49.6
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~ 159 (643)
++.++++|+. .+.++.|+..+..-....... ... -..+... ++..+++|+.. ..+.
T Consensus 20 ~~~~l~~~~~---------~g~i~i~~~~~~~~~~~~~~~--~~~-i~~~~~~~~~~~l~~~~~~-----------~~i~ 76 (289)
T cd00200 20 DGKLLATGSG---------DGTIKVWDLETGELLRTLKGH--TGP-VRDVAASADGTYLASGSSD-----------KTIR 76 (289)
T ss_pred CCCEEEEeec---------CcEEEEEEeeCCCcEEEEecC--Ccc-eeEEEECCCCCEEEEEcCC-----------CeEE
Confidence 4567777773 246777887766422111111 111 1122222 34466666642 4578
Q ss_pred EEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 160 ~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
+||+.+......-. .....-.++... ++.+++.|+. ...+.+||+.+..
T Consensus 77 i~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~---------~~~i~~~~~~~~~ 126 (289)
T cd00200 77 LWDLETGECVRTLT---GHTSYVSSVAFSPDGRILSSSSR---------DKTIKVWDVETGK 126 (289)
T ss_pred EEEcCcccceEEEe---ccCCcEEEEEEcCCCCEEEEecC---------CCeEEEEECCCcE
Confidence 88887653222111 111111222233 3355555552 2468888887543
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=92.36 E-value=18 Score=39.79 Aligned_cols=195 Identities=12% Similarity=0.149 Sum_probs=106.2
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (643)
.++|++|+.+++=+.++... ..-....+..-+.+|++.-.... ..++|.+|+.++.++++... +.
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~--g~~~~~~~SPDG~~la~~~~~~g---------~~~Iy~~dl~~g~~~~LT~~--~~-- 277 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQ--GMLVVSDVSKDGSKLLLTMAPKG---------QPDIYLYDTNTKTLTQITNY--PG-- 277 (419)
T ss_pred CEEEEEECCCCcEEEEecCC--CcEEeeEECCCCCEEEEEEccCC---------CcEEEEEECCCCcEEEcccC--CC--
Confidence 37999999998877776421 11111112112445655433211 25899999999999988652 21
Q ss_pred ceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCC
Q 006473 181 SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEV 258 (643)
Q Consensus 181 s~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~ 258 (643)
..+..... +.+||+.-...+ ...||++|+.+...+++... + .+.......+..|++.......
T Consensus 278 ~d~~p~~SPDG~~I~F~Sdr~g-------~~~Iy~~dl~~g~~~rlt~~--g-----~~~~~~SPDG~~Ia~~~~~~~~- 342 (419)
T PRK04043 278 IDVNGNFVEDDKRIVFVSDRLG-------YPNIFMKKLNSGSVEQVVFH--G-----KNNSSVSTYKNYIVYSSRETNN- 342 (419)
T ss_pred ccCccEECCCCCEEEEEECCCC-------CceEEEEECCCCCeEeCccC--C-----CcCceECCCCCEEEEEEcCCCc-
Confidence 11111211 446666543211 35899999999888777643 1 1122333335555544432211
Q ss_pred CCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEEC
Q 006473 259 STDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQL 338 (643)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~ 338 (643)
..+....+++.+|+.+..+..+...+ ....-...-+++.++|-.... ....|+.+++
T Consensus 343 -------~~~~~~~~I~v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~~-----------~~~~L~~~~l 399 (419)
T PRK04043 343 -------EFGKNTFNLYLISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKYLG-----------NQSALGIIRL 399 (419)
T ss_pred -------ccCCCCcEEEEEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEccC-----------CcEEEEEEec
Confidence 00112357999999999998886532 111111122555555543221 1346999999
Q ss_pred CCCcEEEeEe
Q 006473 339 DNHRWYPLEL 348 (643)
Q Consensus 339 ~t~~W~~l~~ 348 (643)
..+.=..++.
T Consensus 400 ~g~~~~~l~~ 409 (419)
T PRK04043 400 NYNKSFLFPL 409 (419)
T ss_pred CCCeeEEeec
Confidence 8876555654
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.81 E-value=19 Score=38.33 Aligned_cols=185 Identities=11% Similarity=0.102 Sum_probs=89.1
Q ss_pred CCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCce-eeEEEEECCEEEEEeCccCC
Q 006473 68 PRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRS-AHQAVSWKNYLYIFGGEFTS 146 (643)
Q Consensus 68 ~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs-~ha~~~~~~~iyvfGG~~~~ 146 (643)
...-..+++.. .++.|++|-. ..+++=.-.-.+|+.+.... |.... ..++...++..|+.|..
T Consensus 45 ~~~l~~v~F~d--~~~g~avG~~----------G~il~T~DgG~tW~~~~~~~-~~~~~~l~~v~~~~~~~~~~G~~--- 108 (334)
T PRK13684 45 EANLLDIAFTD--PNHGWLVGSN----------RTLLETNDGGETWEERSLDL-PEENFRLISISFKGDEGWIVGQP--- 108 (334)
T ss_pred CCceEEEEEeC--CCcEEEEECC----------CEEEEEcCCCCCceECccCC-cccccceeeeEEcCCcEEEeCCC---
Confidence 33344455542 4567776641 23444322345899875432 22222 22232335556666521
Q ss_pred CCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEec
Q 006473 147 PNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (643)
Q Consensus 147 ~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (643)
.-+++=.-.-.+|+.+... ...+........+ .+.+|+.|.. ..+++=+-.-.+|+.+.
T Consensus 109 ---------g~i~~S~DgG~tW~~~~~~-~~~~~~~~~i~~~~~~~~~~~g~~----------G~i~~S~DgG~tW~~~~ 168 (334)
T PRK13684 109 ---------SLLLHTTDGGKNWTRIPLS-EKLPGSPYLITALGPGTAEMATNV----------GAIYRTTDGGKNWEALV 168 (334)
T ss_pred ---------ceEEEECCCCCCCeEccCC-cCCCCCceEEEEECCCcceeeecc----------ceEEEECCCCCCceeCc
Confidence 2233322224589988642 1111122223333 4456655532 23444333456899886
Q ss_pred cCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEE-eCCCCeeEEeccCCCCCCCceeeEEEE
Q 006473 226 PRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSL-DPRTWEWSKVKKIGMPPGPRAGFSMCV 304 (643)
Q Consensus 226 ~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~y-d~~t~~W~~l~~~g~~P~~R~g~s~~~ 304 (643)
.. . .-+-+.+....+..|+..|..+. ++.. +....+|+.+.. +..+.-+++++
T Consensus 169 ~~-----~-~g~~~~i~~~~~g~~v~~g~~G~----------------i~~s~~~gg~tW~~~~~----~~~~~l~~i~~ 222 (334)
T PRK13684 169 ED-----A-AGVVRNLRRSPDGKYVAVSSRGN----------------FYSTWEPGQTAWTPHQR----NSSRRLQSMGF 222 (334)
T ss_pred CC-----C-cceEEEEEECCCCeEEEEeCCce----------------EEEEcCCCCCeEEEeeC----CCcccceeeeE
Confidence 54 1 22334455554444454444333 2222 344568998854 33445555555
Q ss_pred E-CCeEEEecc
Q 006473 305 H-KKRALLFGG 314 (643)
Q Consensus 305 ~-~~~iyvfGG 314 (643)
. +++++++|.
T Consensus 223 ~~~g~~~~vg~ 233 (334)
T PRK13684 223 QPDGNLWMLAR 233 (334)
T ss_pred cCCCCEEEEec
Confidence 4 678888875
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=91.40 E-value=5.5 Score=40.73 Aligned_cols=110 Identities=20% Similarity=0.291 Sum_probs=76.7
Q ss_pred EEEE-ECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCcc
Q 006473 184 RMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDK 262 (643)
Q Consensus 184 ~~~~-~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~ 262 (643)
+..+ .++.||.--|..+ -+.+..||+.+++-...... |..-+|=+++.++++||..--.++.
T Consensus 49 GL~~~~~g~LyESTG~yG-------~S~l~~~d~~tg~~~~~~~l-----~~~~FgEGit~~~d~l~qLTWk~~~----- 111 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYG-------QSSLRKVDLETGKVLQSVPL-----PPRYFGEGITILGDKLYQLTWKEGT----- 111 (264)
T ss_dssp EEEEEETTEEEEEECSTT-------EEEEEEEETTTSSEEEEEE------TTT--EEEEEEETTEEEEEESSSSE-----
T ss_pred cEEecCCCEEEEeCCCCC-------cEEEEEEECCCCcEEEEEEC-----CccccceeEEEECCEEEEEEecCCe-----
Confidence 3344 4789999888765 35788999999987666666 6677888999999999999877655
Q ss_pred CCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCC
Q 006473 263 NQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (643)
Q Consensus 263 ~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (643)
+++||+.+. +.+... +.+.-|-++|..+..+|+--|. +.|+.+||.+-
T Consensus 112 -----------~f~yd~~tl--~~~~~~---~y~~EGWGLt~dg~~Li~SDGS---------------~~L~~~dP~~f 159 (264)
T PF05096_consen 112 -----------GFVYDPNTL--KKIGTF---PYPGEGWGLTSDGKRLIMSDGS---------------SRLYFLDPETF 159 (264)
T ss_dssp -----------EEEEETTTT--EEEEEE---E-SSS--EEEECSSCEEEE-SS---------------SEEEEE-TTT-
T ss_pred -----------EEEEccccc--eEEEEE---ecCCcceEEEcCCCEEEEECCc---------------cceEEECCccc
Confidence 889999764 344332 3345778888888899998884 45999999864
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=91.32 E-value=7.1 Score=41.13 Aligned_cols=143 Identities=18% Similarity=0.272 Sum_probs=85.0
Q ss_pred CEEEEEcceecCCCCceee-ccEEEEECCCC-----cEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceec
Q 006473 82 TELILYGGEFYNGNKTYVY-GDLYRYDVEKQ-----EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHY 155 (643)
Q Consensus 82 ~~lyvfGG~~~~g~~~~~~-ndv~~yd~~~~-----~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~ 155 (643)
..++++|-.+..+...... ..++.|++... +++.+.... .+-.-++++.++++|++.-|
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~--~~g~V~ai~~~~~~lv~~~g------------- 106 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTE--VKGPVTAICSFNGRLVVAVG------------- 106 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEE--ESS-EEEEEEETTEEEEEET-------------
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEe--ecCcceEhhhhCCEEEEeec-------------
Confidence 5788888776554433333 78999999995 666665433 23335677778999777766
Q ss_pred CeEEEEECCCCc-EEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCC
Q 006473 156 KDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (643)
Q Consensus 156 ~dv~~yD~~t~~-W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (643)
+.+..|++.... +..... ...+-.-.++.+++++|++ |-... .-.++.|+....+-..+... +.
T Consensus 107 ~~l~v~~l~~~~~l~~~~~--~~~~~~i~sl~~~~~~I~v-gD~~~-------sv~~~~~~~~~~~l~~va~d-----~~ 171 (321)
T PF03178_consen 107 NKLYVYDLDNSKTLLKKAF--YDSPFYITSLSVFKNYILV-GDAMK-------SVSLLRYDEENNKLILVARD-----YQ 171 (321)
T ss_dssp TEEEEEEEETTSSEEEEEE--E-BSSSEEEEEEETTEEEE-EESSS-------SEEEEEEETTTE-EEEEEEE-----SS
T ss_pred CEEEEEEccCcccchhhhe--ecceEEEEEEeccccEEEE-EEccc-------CEEEEEEEccCCEEEEEEec-----CC
Confidence 356777777777 877766 3333456667777886664 43211 12344567756666666655 55
Q ss_pred CccceeEEEe-CCEEEEEcCC
Q 006473 235 PRSGFQFFVY-QDEVFLYGGY 254 (643)
Q Consensus 235 ~R~~~s~~~~-~~~iyv~GG~ 254 (643)
++...++..+ ++..++.+-.
T Consensus 172 ~~~v~~~~~l~d~~~~i~~D~ 192 (321)
T PF03178_consen 172 PRWVTAAEFLVDEDTIIVGDK 192 (321)
T ss_dssp -BEEEEEEEE-SSSEEEEEET
T ss_pred CccEEEEEEecCCcEEEEEcC
Confidence 6666666666 4444444433
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=91.26 E-value=18 Score=36.52 Aligned_cols=111 Identities=15% Similarity=0.119 Sum_probs=54.3
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCC
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQE 150 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~ 150 (643)
++.+.|. +..+|+.++. .+.+++||+.+.+....-... +.++ .++.. ++.+|+.++.
T Consensus 35 ~l~~~~d-g~~l~~~~~~---------~~~v~~~d~~~~~~~~~~~~~-~~~~---~~~~~~~g~~l~~~~~~------- 93 (300)
T TIGR03866 35 GITLSKD-GKLLYVCASD---------SDTIQVIDLATGEVIGTLPSG-PDPE---LFALHPNGKILYIANED------- 93 (300)
T ss_pred ceEECCC-CCEEEEEECC---------CCeEEEEECCCCcEEEeccCC-CCcc---EEEECCCCCEEEEEcCC-------
Confidence 3455542 3456666652 246889999887765421111 1221 22222 4456666542
Q ss_pred cceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
.+.+.+||+.+..-...- +.....+.+++. ++.+++++... .+.++.||+.+..
T Consensus 94 ----~~~l~~~d~~~~~~~~~~----~~~~~~~~~~~~~dg~~l~~~~~~--------~~~~~~~d~~~~~ 148 (300)
T TIGR03866 94 ----DNLVTVIDIETRKVLAEI----PVGVEPEGMAVSPDGKIVVNTSET--------TNMAHFIDTKTYE 148 (300)
T ss_pred ----CCeEEEEECCCCeEEeEe----eCCCCcceEEECCCCCEEEEEecC--------CCeEEEEeCCCCe
Confidence 145888998875422111 111111233332 55666665432 1235667876543
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=91.16 E-value=3.9 Score=41.85 Aligned_cols=150 Identities=17% Similarity=0.192 Sum_probs=92.0
Q ss_pred ECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEE
Q 006473 133 WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLY 212 (643)
Q Consensus 133 ~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~ 212 (643)
.++.||.--|..+ -+.+.+||+.+++-..... +|..-.+=+++.++++||..-=. ....+
T Consensus 54 ~~g~LyESTG~yG---------~S~l~~~d~~tg~~~~~~~--l~~~~FgEGit~~~d~l~qLTWk---------~~~~f 113 (264)
T PF05096_consen 54 DDGTLYESTGLYG---------QSSLRKVDLETGKVLQSVP--LPPRYFGEGITILGDKLYQLTWK---------EGTGF 113 (264)
T ss_dssp ETTEEEEEECSTT---------EEEEEEEETTTSSEEEEEE---TTT--EEEEEEETTEEEEEESS---------SSEEE
T ss_pred CCCEEEEeCCCCC---------cEEEEEEECCCCcEEEEEE--CCccccceeEEEECCEEEEEEec---------CCeEE
Confidence 4789999888754 2678899999998665544 67777888999999999998432 46789
Q ss_pred EEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEe---cc
Q 006473 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV---KK 289 (643)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l---~~ 289 (643)
+||+.+. +.+... +.+..|.+++..+..||+--|.+ .++.+||.+.+=.+. ..
T Consensus 114 ~yd~~tl--~~~~~~-----~y~~EGWGLt~dg~~Li~SDGS~-----------------~L~~~dP~~f~~~~~i~V~~ 169 (264)
T PF05096_consen 114 VYDPNTL--KKIGTF-----PYPGEGWGLTSDGKRLIMSDGSS-----------------RLYFLDPETFKEVRTIQVTD 169 (264)
T ss_dssp EEETTTT--EEEEEE-----E-SSS--EEEECSSCEEEE-SSS-----------------EEEEE-TTT-SEEEEEE-EE
T ss_pred EEccccc--eEEEEE-----ecCCcceEEEcCCCEEEEECCcc-----------------ceEEECCcccceEEEEEEEE
Confidence 9999764 455544 45568888888888999988853 488999987643322 11
Q ss_pred CCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 290 IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 290 ~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
.| .|..+ --=+-++++.||.== -..+.|.+.||.++.
T Consensus 170 ~g-~pv~~-LNELE~i~G~IyANV--------------W~td~I~~Idp~tG~ 206 (264)
T PF05096_consen 170 NG-RPVSN-LNELEYINGKIYANV--------------WQTDRIVRIDPETGK 206 (264)
T ss_dssp TT-EE----EEEEEEETTEEEEEE--------------TTSSEEEEEETTT-B
T ss_pred CC-EECCC-cEeEEEEcCEEEEEe--------------CCCCeEEEEeCCCCe
Confidence 11 11111 112333455544311 124668889999875
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=91.01 E-value=9.8 Score=40.07 Aligned_cols=141 Identities=15% Similarity=0.170 Sum_probs=81.6
Q ss_pred CEEEEEeCccCCCCCCcceec-CeEEEEECCCC-----cEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeee
Q 006473 135 NYLYIFGGEFTSPNQERFHHY-KDFWMLDLKTN-----QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYY 208 (643)
Q Consensus 135 ~~iyvfGG~~~~~~~~~~~~~-~dv~~yD~~t~-----~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~ 208 (643)
..++++|.....+.. .... ..+..|++... +++.+... +..-.-++++.++++|++.-|
T Consensus 42 ~~~ivVGT~~~~~~~--~~~~~Gri~v~~i~~~~~~~~~l~~i~~~--~~~g~V~ai~~~~~~lv~~~g----------- 106 (321)
T PF03178_consen 42 KEYIVVGTAFNYGED--PEPSSGRILVFEISESPENNFKLKLIHST--EVKGPVTAICSFNGRLVVAVG----------- 106 (321)
T ss_dssp SEEEEEEEEE--TTS--SS-S-EEEEEEEECSS-----EEEEEEEE--EESS-EEEEEEETTEEEEEET-----------
T ss_pred cCEEEEEeccccccc--ccccCcEEEEEEEEcccccceEEEEEEEE--eecCcceEhhhhCCEEEEeec-----------
Confidence 467777754332221 0112 56888888874 56655442 222234567778999666555
Q ss_pred ccEEEEEcCCCc-eEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEe
Q 006473 209 NDLYVFDLDQFK-WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (643)
Q Consensus 209 ~dv~~yD~~t~~-W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l 287 (643)
+.+++|++.... +...... ..+-...++.++++.|++---+.+. .++.|+....+-..+
T Consensus 107 ~~l~v~~l~~~~~l~~~~~~-----~~~~~i~sl~~~~~~I~vgD~~~sv---------------~~~~~~~~~~~l~~v 166 (321)
T PF03178_consen 107 NKLYVYDLDNSKTLLKKAFY-----DSPFYITSLSVFKNYILVGDAMKSV---------------SLLRYDEENNKLILV 166 (321)
T ss_dssp TEEEEEEEETTSSEEEEEEE------BSSSEEEEEEETTEEEEEESSSSE---------------EEEEEETTTE-EEEE
T ss_pred CEEEEEEccCcccchhhhee-----cceEEEEEEeccccEEEEEEcccCE---------------EEEEEEccCCEEEEE
Confidence 467788888777 8888776 3344556666778866643333221 255677766667777
Q ss_pred ccCCCCCCCceeeEEEEE-CCeEEEecc
Q 006473 288 KKIGMPPGPRAGFSMCVH-KKRALLFGG 314 (643)
Q Consensus 288 ~~~g~~P~~R~g~s~~~~-~~~iyvfGG 314 (643)
... +.++...++.++ ++. .++++
T Consensus 167 a~d---~~~~~v~~~~~l~d~~-~~i~~ 190 (321)
T PF03178_consen 167 ARD---YQPRWVTAAEFLVDED-TIIVG 190 (321)
T ss_dssp EEE---SS-BEEEEEEEE-SSS-EEEEE
T ss_pred Eec---CCCccEEEEEEecCCc-EEEEE
Confidence 653 457777777777 665 44544
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=90.93 E-value=18 Score=41.19 Aligned_cols=182 Identities=15% Similarity=0.125 Sum_probs=90.9
Q ss_pred EEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCc--EEEeccCC--C-C---CCCceeEEEEECCEEEEEeeeecC
Q 006473 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKG--C-P---SPRSGHRMVLYKHKIIVFGGFYDT 201 (643)
Q Consensus 130 ~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g--~-P---~~Rs~h~~~~~~~~lyvfGG~~~~ 201 (643)
-++.++.||+.... ..|+.+|..|++ |+.-.... . + ........++.+++||+...
T Consensus 65 Pvv~~g~vyv~s~~------------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~---- 128 (527)
T TIGR03075 65 PLVVDGVMYVTTSY------------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL---- 128 (527)
T ss_pred CEEECCEEEEECCC------------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC----
Confidence 44568899986442 458889988764 87543211 0 1 00112234566788876321
Q ss_pred CCceeeeccEEEEEcCCCc--eEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeC
Q 006473 202 LREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDP 279 (643)
Q Consensus 202 ~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~ 279 (643)
-..|+++|..+.+ |+.-..... .......+.++.++.||+-...... .....++.||.
T Consensus 129 ------dg~l~ALDa~TGk~~W~~~~~~~~---~~~~~tssP~v~~g~Vivg~~~~~~-----------~~~G~v~AlD~ 188 (527)
T TIGR03075 129 ------DARLVALDAKTGKVVWSKKNGDYK---AGYTITAAPLVVKGKVITGISGGEF-----------GVRGYVTAYDA 188 (527)
T ss_pred ------CCEEEEEECCCCCEEeeccccccc---ccccccCCcEEECCEEEEeeccccc-----------CCCcEEEEEEC
Confidence 2468999998765 765332100 0111222335557777664321111 12235778887
Q ss_pred CCC--eeEEeccCCCC-------------C------C---Ccee----eEEEEE--CCeEEEeccccccc-cCccccccc
Q 006473 280 RTW--EWSKVKKIGMP-------------P------G---PRAG----FSMCVH--KKRALLFGGVVDME-MKGDVIMSL 328 (643)
Q Consensus 280 ~t~--~W~~l~~~g~~-------------P------~---~R~g----~s~~~~--~~~iyvfGG~~~~~-~~~~~~~~~ 328 (643)
.+. .|..-...+.+ | . .|.+ .++++- .+.||+=-|.-.+- .........
T Consensus 189 ~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl 268 (527)
T TIGR03075 189 KTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNL 268 (527)
T ss_pred CCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCc
Confidence 664 56543321110 0 0 1111 233333 35566654441110 001112356
Q ss_pred cCCcEEEEECCCC--cEEEeE
Q 006473 329 FLNELYGFQLDNH--RWYPLE 347 (643)
Q Consensus 329 ~~ndl~~yd~~t~--~W~~l~ 347 (643)
|.+.|.++|++|. +|..-.
T Consensus 269 ~~~s~vAld~~TG~~~W~~Q~ 289 (527)
T TIGR03075 269 YTSSIVARDPDTGKIKWHYQT 289 (527)
T ss_pred cceeEEEEccccCCEEEeeeC
Confidence 7889999999987 576433
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=90.74 E-value=24 Score=37.06 Aligned_cols=10 Identities=10% Similarity=0.285 Sum_probs=7.8
Q ss_pred CeEEEEECCC
Q 006473 156 KDFWMLDLKT 165 (643)
Q Consensus 156 ~dv~~yD~~t 165 (643)
+.+++||+.+
T Consensus 148 ~~v~v~d~~~ 157 (330)
T PRK11028 148 DRIRLFTLSD 157 (330)
T ss_pred CEEEEEEECC
Confidence 5688898876
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=90.66 E-value=20 Score=35.97 Aligned_cols=163 Identities=12% Similarity=0.108 Sum_probs=85.7
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCC--C-CCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCe
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSP--N-SPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKD 157 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~--~-~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~d 157 (643)
++.||+... ..+..+|+.+++++.+... . .+..+.+-.++.-++.||+.--....... .....
T Consensus 51 ~g~l~v~~~-----------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~---~~~g~ 116 (246)
T PF08450_consen 51 DGRLYVADS-----------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASG---IDPGS 116 (246)
T ss_dssp TSEEEEEET-----------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTC---GGSEE
T ss_pred CCEEEEEEc-----------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCcccc---ccccc
Confidence 577877665 2346679999999977653 1 13444444444447888886422111111 00157
Q ss_pred EEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCc--eEEeccCCCCCCC
Q 006473 158 FWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWP 233 (643)
Q Consensus 158 v~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P 233 (643)
+|++++. .+...+... ..+ -.++++- ++.||+.-- ..+.+|+|++.... +....... ..+
T Consensus 117 v~~~~~~-~~~~~~~~~---~~~-pNGi~~s~dg~~lyv~ds---------~~~~i~~~~~~~~~~~~~~~~~~~--~~~ 180 (246)
T PF08450_consen 117 VYRIDPD-GKVTVVADG---LGF-PNGIAFSPDGKTLYVADS---------FNGRIWRFDLDADGGELSNRRVFI--DFP 180 (246)
T ss_dssp EEEEETT-SEEEEEEEE---ESS-EEEEEEETTSSEEEEEET---------TTTEEEEEEEETTTCCEEEEEEEE--E-S
T ss_pred eEEECCC-CeEEEEecC---ccc-ccceEECCcchheeeccc---------ccceeEEEeccccccceeeeeeEE--EcC
Confidence 9999998 666655431 111 2344443 446777421 24669999986433 43222110 001
Q ss_pred CC-ccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEecc
Q 006473 234 SP-RSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (643)
Q Consensus 234 ~~-R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~ 289 (643)
.. ..--.+++. ++.|||..-.. ..|++|++....-..+..
T Consensus 181 ~~~g~pDG~~vD~~G~l~va~~~~----------------~~I~~~~p~G~~~~~i~~ 222 (246)
T PF08450_consen 181 GGPGYPDGLAVDSDGNLWVADWGG----------------GRIVVFDPDGKLLREIEL 222 (246)
T ss_dssp SSSCEEEEEEEBTTS-EEEEEETT----------------TEEEEEETTSCEEEEEE-
T ss_pred CCCcCCCcceEcCCCCEEEEEcCC----------------CEEEEECCCccEEEEEcC
Confidence 11 112234444 78888873322 238999999666666653
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=90.11 E-value=0.068 Score=57.24 Aligned_cols=8 Identities=25% Similarity=0.576 Sum_probs=5.9
Q ss_pred Eeecceec
Q 006473 480 ITLDDLYS 487 (643)
Q Consensus 480 ~tl~D~~~ 487 (643)
+|++|+-.
T Consensus 26 lTi~Dtlk 33 (458)
T PF10446_consen 26 LTINDTLK 33 (458)
T ss_pred ccHHHHHH
Confidence 78898743
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=89.98 E-value=33 Score=37.86 Aligned_cols=153 Identities=12% Similarity=0.055 Sum_probs=85.4
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeEEEEECC-EEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~-~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (643)
.++|++|+.+++=+.+... + .........-++ +|++.-...+ ..++|.+|+.+..++++...+.
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~--~-g~~~~~~~SPDG~~la~~~~~~g-------~~~Iy~~dl~~g~~~~LT~~~~----- 277 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASS--Q-GMLVVSDVSKDGSKLLLTMAPKG-------QPDIYLYDTNTKTLTQITNYPG----- 277 (419)
T ss_pred CEEEEEECCCCcEEEEecC--C-CcEEeeEECCCCCEEEEEEccCC-------CcEEEEEECCCCcEEEcccCCC-----
Confidence 4799999998877666531 1 111111112233 5554433211 3689999999999988876521
Q ss_pred CccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEecc
Q 006473 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314 (643)
Q Consensus 235 ~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG 314 (643)
.-........+..||+.-...+ ..++|++|+.+....++...+. ..... .-+++.++|-.
T Consensus 278 ~d~~p~~SPDG~~I~F~Sdr~g--------------~~~Iy~~dl~~g~~~rlt~~g~-----~~~~~-SPDG~~Ia~~~ 337 (419)
T PRK04043 278 IDVNGNFVEDDKRIVFVSDRLG--------------YPNIFMKKLNSGSVEQVVFHGK-----NNSSV-STYKNYIVYSS 337 (419)
T ss_pred ccCccEECCCCCEEEEEECCCC--------------CceEEEEECCCCCeEeCccCCC-----cCceE-CCCCCEEEEEE
Confidence 1111223333556777654322 2479999999888877754322 12222 22444444433
Q ss_pred ccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 315 VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 315 ~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
...... .+....+|+++|+.+..+..|..
T Consensus 338 ~~~~~~-----~~~~~~~I~v~d~~~g~~~~LT~ 366 (419)
T PRK04043 338 RETNNE-----FGKNTFNLYLISTNSDYIRRLTA 366 (419)
T ss_pred cCCCcc-----cCCCCcEEEEEECCCCCeEECCC
Confidence 221100 01123579999999999888775
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=89.77 E-value=34 Score=37.28 Aligned_cols=148 Identities=15% Similarity=0.102 Sum_probs=84.9
Q ss_pred CeEEEEECCCC-----cEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc---eEEeccC
Q 006473 156 KDFWMLDLKTN-----QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK---WQEIKPR 227 (643)
Q Consensus 156 ~dv~~yD~~t~-----~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~---W~~v~~~ 227 (643)
+++|.+++... .|..+.. +..-..+.+...++.+|+...... ....|..+++.... |..+-..
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~---~~~~~~~~v~~~~~~~yi~Tn~~a------~~~~l~~~~l~~~~~~~~~~~l~~ 322 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSP---REDGVEYYVDHHGDRLYILTNDDA------PNGRLVAVDLADPSPAEWWTVLIP 322 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEE---SSSS-EEEEEEETTEEEEEE-TT-------TT-EEEEEETTSTSGGGEEEEEE-
T ss_pred CeEEEEeccccCCCcCCcEEEeC---CCCceEEEEEccCCEEEEeeCCCC------CCcEEEEecccccccccceeEEcC
Confidence 78999999875 7888765 222223334455889998866321 24578888888765 6643332
Q ss_pred CCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCC-CCeeEEeccCCCCCCCceeeEEEEE-
Q 006473 228 FGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR-TWEWSKVKKIGMPPGPRAGFSMCVH- 305 (643)
Q Consensus 228 ~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~-t~~W~~l~~~g~~P~~R~g~s~~~~- 305 (643)
+ .....--.+.+.++.|+|.-=.+ ....+.+|++. +..-..+.. |. .+....+.
T Consensus 323 ~----~~~~~l~~~~~~~~~Lvl~~~~~--------------~~~~l~v~~~~~~~~~~~~~~----p~--~g~v~~~~~ 378 (414)
T PF02897_consen 323 E----DEDVSLEDVSLFKDYLVLSYREN--------------GSSRLRVYDLDDGKESREIPL----PE--AGSVSGVSG 378 (414)
T ss_dssp -----SSSEEEEEEEEETTEEEEEEEET--------------TEEEEEEEETT-TEEEEEEES----SS--SSEEEEEES
T ss_pred C----CCceeEEEEEEECCEEEEEEEEC--------------CccEEEEEECCCCcEEeeecC----Cc--ceEEeccCC
Confidence 0 22234445555688888775332 34678899988 433333332 22 22211121
Q ss_pred ---CCe-EEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 306 ---KKR-ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 306 ---~~~-iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
.+. .|.+.+... ...+|.||+.+++...+..
T Consensus 379 ~~~~~~~~~~~ss~~~------------P~~~y~~d~~t~~~~~~k~ 413 (414)
T PF02897_consen 379 DFDSDELRFSYSSFTT------------PPTVYRYDLATGELTLLKQ 413 (414)
T ss_dssp -TT-SEEEEEEEETTE------------EEEEEEEETTTTCEEEEEE
T ss_pred CCCCCEEEEEEeCCCC------------CCEEEEEECCCCCEEEEEe
Confidence 233 444555543 4579999999998887753
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=89.19 E-value=24 Score=35.98 Aligned_cols=191 Identities=18% Similarity=0.228 Sum_probs=97.0
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~ 160 (643)
.+++|++.|. .+..-..+..+..| ...+.+...- .+|-+-.|...+++++.+|..-. -.+.+.+
T Consensus 30 ~~~iy~~~~~--~~~~v~ey~~~~~f-~~~~~~~~~~--~Lp~~~~GtG~vVYngslYY~~~-----------~s~~Ivk 93 (250)
T PF02191_consen 30 SEKIYVTSGF--SGNTVYEYRNYEDF-LRNGRSSRTY--KLPYPWQGTGHVVYNGSLYYNKY-----------NSRNIVK 93 (250)
T ss_pred CCCEEEECcc--CCCEEEEEcCHhHH-hhcCCCceEE--EEeceeccCCeEEECCcEEEEec-----------CCceEEE
Confidence 5789999884 22221222222222 1111111111 13444556666677887777633 1478999
Q ss_pred EECCCCcEE---EeccCCC----CCCCcee---EEEEECCEEEEEeeeecCCCceeeeccEEEEEcCC----CceEEecc
Q 006473 161 LDLKTNQWE---QLNLKGC----PSPRSGH---RMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ----FKWQEIKP 226 (643)
Q Consensus 161 yD~~t~~W~---~~~~~g~----P~~Rs~h---~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t----~~W~~v~~ 226 (643)
||+.++.-. .++..+. |-...++ -.++-.+-|+|+-....... .--|-.+|+.+ .+|..-
T Consensus 94 ydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g----~ivvskld~~tL~v~~tw~T~-- 167 (250)
T PF02191_consen 94 YDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG----NIVVSKLDPETLSVEQTWNTS-- 167 (250)
T ss_pred EECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC----cEEEEeeCcccCceEEEEEec--
Confidence 999998654 3332111 1111111 22333556777755433211 12344456654 345532
Q ss_pred CCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-
Q 006473 227 RFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH- 305 (643)
Q Consensus 227 ~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~- 305 (643)
. +.+..+.++++| |.||++-..... ...-.+.||+.+++=..+... .+.+-..+++.-.
T Consensus 168 ~-----~k~~~~naFmvC-GvLY~~~s~~~~------------~~~I~yafDt~t~~~~~~~i~--f~~~~~~~~~l~YN 227 (250)
T PF02191_consen 168 Y-----PKRSAGNAFMVC-GVLYATDSYDTR------------DTEIFYAFDTYTGKEEDVSIP--FPNPYGNISMLSYN 227 (250)
T ss_pred c-----CchhhcceeeEe-eEEEEEEECCCC------------CcEEEEEEECCCCceeceeee--eccccCceEeeeEC
Confidence 1 444455544444 678888766543 134468999988766554321 2334445555555
Q ss_pred --CCeEEEec
Q 006473 306 --KKRALLFG 313 (643)
Q Consensus 306 --~~~iyvfG 313 (643)
+.+||++-
T Consensus 228 P~dk~LY~wd 237 (250)
T PF02191_consen 228 PRDKKLYAWD 237 (250)
T ss_pred CCCCeEEEEE
Confidence 47788875
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.88 E-value=41 Score=36.96 Aligned_cols=174 Identities=16% Similarity=0.222 Sum_probs=87.3
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEec-CCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVIS-SPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFW 159 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~-s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~ 159 (643)
++.++++|+- +. -+-.+|..+..- ++. ++.----|++ ++...+++|++.||++. .+-
T Consensus 122 d~t~l~s~sD---d~------v~k~~d~s~a~v-~~~l~~htDYVR~g-~~~~~~~hivvtGsYDg-----------~vr 179 (487)
T KOG0310|consen 122 DNTMLVSGSD---DK------VVKYWDLSTAYV-QAELSGHTDYVRCG-DISPANDHIVVTGSYDG-----------KVR 179 (487)
T ss_pred CCeEEEecCC---Cc------eEEEEEcCCcEE-EEEecCCcceeEee-ccccCCCeEEEecCCCc-----------eEE
Confidence 6899999983 21 122334444432 211 1111122333 23344788999999754 355
Q ss_pred EEECCCC-cEEEeccCCCCCCCceeEEEEE-C-CEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCc
Q 006473 160 MLDLKTN-QWEQLNLKGCPSPRSGHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR 236 (643)
Q Consensus 160 ~yD~~t~-~W~~~~~~g~P~~Rs~h~~~~~-~-~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R 236 (643)
.||+.+. .|..--.-+.|.. .++.+ + ..|...|| |.+-++|+.++. +.+..+ .....
T Consensus 180 l~DtR~~~~~v~elnhg~pVe----~vl~lpsgs~iasAgG-----------n~vkVWDl~~G~-qll~~~----~~H~K 239 (487)
T KOG0310|consen 180 LWDTRSLTSRVVELNHGCPVE----SVLALPSGSLIASAGG-----------NSVKVWDLTTGG-QLLTSM----FNHNK 239 (487)
T ss_pred EEEeccCCceeEEecCCCcee----eEEEcCCCCEEEEcCC-----------CeEEEEEecCCc-eehhhh----hcccc
Confidence 6777665 5543322222322 12333 3 45555555 457777776442 111111 01111
Q ss_pred cceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEE-ECCeEEEecc
Q 006473 237 SGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRALLFGG 314 (643)
Q Consensus 237 ~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~-~~~~iyvfGG 314 (643)
.--|+... ++.-++-||.++. +-+|| +..|..+..+.. |.|-. ++++ .++.-+++|+
T Consensus 240 tVTcL~l~s~~~rLlS~sLD~~----------------VKVfd--~t~~Kvv~s~~~-~~pvL--siavs~dd~t~viGm 298 (487)
T KOG0310|consen 240 TVTCLRLASDSTRLLSGSLDRH----------------VKVFD--TTNYKVVHSWKY-PGPVL--SIAVSPDDQTVVIGM 298 (487)
T ss_pred eEEEEEeecCCceEeecccccc----------------eEEEE--ccceEEEEeeec-cccee--eEEecCCCceEEEec
Confidence 11122222 5577788888776 66787 345666655433 33332 3333 3788888888
Q ss_pred ccc
Q 006473 315 VVD 317 (643)
Q Consensus 315 ~~~ 317 (643)
.++
T Consensus 299 snG 301 (487)
T KOG0310|consen 299 SNG 301 (487)
T ss_pred ccc
Confidence 765
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=88.38 E-value=41 Score=40.33 Aligned_cols=131 Identities=10% Similarity=0.010 Sum_probs=62.8
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWP 233 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P 233 (643)
..+.+||+.+++....-. ... ..-.+++.. ++.+++.||.+ ..+.+||+.+..- +..... .
T Consensus 555 g~v~lWd~~~~~~~~~~~--~H~-~~V~~l~~~p~~~~~L~Sgs~D---------g~v~iWd~~~~~~--~~~~~~---~ 617 (793)
T PLN00181 555 GVVQVWDVARSQLVTEMK--EHE-KRVWSIDYSSADPTLLASGSDD---------GSVKLWSINQGVS--IGTIKT---K 617 (793)
T ss_pred CeEEEEECCCCeEEEEec--CCC-CCEEEEEEcCCCCCEEEEEcCC---------CEEEEEECCCCcE--EEEEec---C
Confidence 357788887664322111 111 111223332 45677777753 3477788765432 111100 1
Q ss_pred CCccceeEEE--eCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCe--eEEeccCCCCCCCceeeEEEEECCeE
Q 006473 234 SPRSGFQFFV--YQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE--WSKVKKIGMPPGPRAGFSMCVHKKRA 309 (643)
Q Consensus 234 ~~R~~~s~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~--W~~l~~~g~~P~~R~g~s~~~~~~~i 309 (643)
.. ..++.. .++.+++.|+.++. +.+||+.+.. ...+. +. ...-..+.+.++..
T Consensus 618 ~~--v~~v~~~~~~g~~latgs~dg~----------------I~iwD~~~~~~~~~~~~--~h---~~~V~~v~f~~~~~ 674 (793)
T PLN00181 618 AN--ICCVQFPSESGRSLAFGSADHK----------------VYYYDLRNPKLPLCTMI--GH---SKTVSYVRFVDSST 674 (793)
T ss_pred CC--eEEEEEeCCCCCEEEEEeCCCe----------------EEEEECCCCCccceEec--CC---CCCEEEEEEeCCCE
Confidence 11 111221 25678888877654 7888876532 11121 11 11112333346666
Q ss_pred EEeccccccccCccccccccCCcEEEEECCC
Q 006473 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (643)
Q Consensus 310 yvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (643)
++.|+.. +.|.+||+..
T Consensus 675 lvs~s~D--------------~~ikiWd~~~ 691 (793)
T PLN00181 675 LVSSSTD--------------NTLKLWDLSM 691 (793)
T ss_pred EEEEECC--------------CEEEEEeCCC
Confidence 6666643 3477888754
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=88.27 E-value=25 Score=38.01 Aligned_cols=209 Identities=14% Similarity=0.200 Sum_probs=97.5
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~ 160 (643)
++.-+||+|. +++. ..+|.+|+.+.+-.+|+... .....+..++.-+..||.+-. ...++.
T Consensus 46 dG~kllF~s~-~dg~-----~nly~lDL~t~~i~QLTdg~-g~~~~g~~~s~~~~~~~Yv~~------------~~~l~~ 106 (386)
T PF14583_consen 46 DGRKLLFASD-FDGN-----RNLYLLDLATGEITQLTDGP-GDNTFGGFLSPDDRALYYVKN------------GRSLRR 106 (386)
T ss_dssp TS-EEEEEE--TTSS------EEEEEETTT-EEEE---SS--B-TTT-EE-TTSSEEEEEET------------TTEEEE
T ss_pred CCCEEEEEec-cCCC-----cceEEEEcccCEEEECccCC-CCCccceEEecCCCeEEEEEC------------CCeEEE
Confidence 5677778775 3443 47899999999999998753 122333333333566554431 146899
Q ss_pred EECCCCcEEEeccCCCCCCCceeEEEEEC--CEEEEEeeeecCC------C---------ceeeeccEEEEEcCCCceEE
Q 006473 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYK--HKIIVFGGFYDTL------R---------EVRYYNDLYVFDLDQFKWQE 223 (643)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~--~~lyvfGG~~~~~------~---------~~~~~~dv~~yD~~t~~W~~ 223 (643)
+|+.|.+=+.+-. .|..-.+....+.+ ... ++ |..... . ..+..+.+...|+.+...+.
T Consensus 107 vdL~T~e~~~vy~--~p~~~~g~gt~v~n~d~t~-~~-g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~ 182 (386)
T PF14583_consen 107 VDLDTLEERVVYE--VPDDWKGYGTWVANSDCTK-LV-GIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKV 182 (386)
T ss_dssp EETTT--EEEEEE----TTEEEEEEEEE-TTSSE-EE-EEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEE
T ss_pred EECCcCcEEEEEE--CCcccccccceeeCCCccE-EE-EEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeE
Confidence 9999987666554 35444443333332 222 22 221100 0 02235678888998888777
Q ss_pred eccCCCCCCCCCccceeEEEeCCEEEEE---cCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceee
Q 006473 224 IKPRFGSMWPSPRSGFQFFVYQDEVFLY---GGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF 300 (643)
Q Consensus 224 v~~~~~~~~P~~R~~~s~~~~~~~iyv~---GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~ 300 (643)
+-.. ..-.....+.+.+..+++| |.... +...||..+.......++... .+.-.++|
T Consensus 183 v~~~-----~~wlgH~~fsP~dp~li~fCHEGpw~~-------------Vd~RiW~i~~dg~~~~~v~~~--~~~e~~gH 242 (386)
T PF14583_consen 183 VFED-----TDWLGHVQFSPTDPTLIMFCHEGPWDL-------------VDQRIWTINTDGSNVKKVHRR--MEGESVGH 242 (386)
T ss_dssp EEEE-----SS-EEEEEEETTEEEEEEEEE-S-TTT-------------SS-SEEEEETTS---EESS-----TTEEEEE
T ss_pred EEec-----CccccCcccCCCCCCEEEEeccCCcce-------------eceEEEEEEcCCCcceeeecC--CCCccccc
Confidence 7554 2222222333446677777 44432 334689999877776666542 24455666
Q ss_pred EEEEECCeEEEeccccccccCccccccccCCcEEEEECCCC
Q 006473 301 SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (643)
Q Consensus 301 s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (643)
=.-+.+|..+.|=+..... . ---|..||+.|.
T Consensus 243 Efw~~DG~~i~y~~~~~~~-------~--~~~i~~~d~~t~ 274 (386)
T PF14583_consen 243 EFWVPDGSTIWYDSYTPGG-------Q--DFWIAGYDPDTG 274 (386)
T ss_dssp EEE-TTSS-EEEEEEETTT-----------EEEEEE-TTT-
T ss_pred ccccCCCCEEEEEeecCCC-------C--ceEEEeeCCCCC
Confidence 5555566655553332211 0 112777888764
|
|
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=88.24 E-value=12 Score=38.29 Aligned_cols=172 Identities=15% Similarity=0.203 Sum_probs=93.4
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEE
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~ 213 (643)
.++||++.|..... ...+..+..| ...+.+...-. +|.+-.|.+.+++++.||..-. -.+.|.+
T Consensus 30 ~~~iy~~~~~~~~~----v~ey~~~~~f-~~~~~~~~~~~--Lp~~~~GtG~vVYngslYY~~~---------~s~~Ivk 93 (250)
T PF02191_consen 30 SEKIYVTSGFSGNT----VYEYRNYEDF-LRNGRSSRTYK--LPYPWQGTGHVVYNGSLYYNKY---------NSRNIVK 93 (250)
T ss_pred CCCEEEECccCCCE----EEEEcCHhHH-hhcCCCceEEE--EeceeccCCeEEECCcEEEEec---------CCceEEE
Confidence 45788887754321 1122222222 12222222222 4677778888999999887543 1678999
Q ss_pred EEcCCCceEEeccCCCCC----CCCCccc---eeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCC----
Q 006473 214 FDLDQFKWQEIKPRFGSM----WPSPRSG---FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW---- 282 (643)
Q Consensus 214 yD~~t~~W~~v~~~~~~~----~P~~R~~---~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~---- 282 (643)
||+.+..-.....+|.+. .|....+ .-+++-++.|+|+=..... .+ .--+-.+|+.+.
T Consensus 94 ydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~---------~g--~ivvskld~~tL~v~~ 162 (250)
T PF02191_consen 94 YDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDN---------NG--NIVVSKLDPETLSVEQ 162 (250)
T ss_pred EECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCC---------CC--cEEEEeeCcccCceEE
Confidence 999988765222222111 1222222 2334457778777554432 01 112345666554
Q ss_pred eeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 283 EWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 283 ~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
+|..- .+.+ .-..+.++-|.||++....... ..-.++||+.+++=..+.+
T Consensus 163 tw~T~-----~~k~-~~~naFmvCGvLY~~~s~~~~~----------~~I~yafDt~t~~~~~~~i 212 (250)
T PF02191_consen 163 TWNTS-----YPKR-SAGNAFMVCGVLYATDSYDTRD----------TEIFYAFDTYTGKEEDVSI 212 (250)
T ss_pred EEEec-----cCch-hhcceeeEeeEEEEEEECCCCC----------cEEEEEEECCCCceeceee
Confidence 45432 1222 2334667789999988765321 2336899999887666555
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=87.92 E-value=81 Score=39.25 Aligned_cols=159 Identities=10% Similarity=0.111 Sum_probs=84.8
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCC-----------CCCceeEEEEE--CCEEEEEeeeec
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP-----------SPRSGHRMVLY--KHKIIVFGGFYD 200 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P-----------~~Rs~h~~~~~--~~~lyvfGG~~~ 200 (643)
++.|||.... .+.+|+||+.++....+...+.. ....-+++++. ++.|||.-..
T Consensus 694 ~g~LyVad~~-----------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-- 760 (1057)
T PLN02919 694 NEKVYIAMAG-----------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-- 760 (1057)
T ss_pred CCeEEEEECC-----------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC--
Confidence 5778887532 25689999887766544322210 00111233333 3468886542
Q ss_pred CCCceeeeccEEEEEcCCCceEEeccCC----C---------CCCCCCccc--eeEEEe-CCEEEEEcCCCCCCCCccCC
Q 006473 201 TLREVRYYNDLYVFDLDQFKWQEIKPRF----G---------SMWPSPRSG--FQFFVY-QDEVFLYGGYSKEVSTDKNQ 264 (643)
Q Consensus 201 ~~~~~~~~~dv~~yD~~t~~W~~v~~~~----~---------~~~P~~R~~--~s~~~~-~~~iyv~GG~~~~~~~~~~~ 264 (643)
.+.|.+||+.++....+.... . +........ .++++. ++.|||.-..+..
T Consensus 761 -------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~r------- 826 (1057)
T PLN02919 761 -------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHK------- 826 (1057)
T ss_pred -------CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCE-------
Confidence 467999998876543222100 0 000000000 122333 5678887765443
Q ss_pred CCCCceeeeEEEEeCCCCeeEEeccCCCC-------CCCc--eeeEEEEE-CCeEEEeccccccccCccccccccCCcEE
Q 006473 265 SEKGIIHSDLWSLDPRTWEWSKVKKIGMP-------PGPR--AGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELY 334 (643)
Q Consensus 265 ~~~~~~~~dv~~yd~~t~~W~~l~~~g~~-------P~~R--~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~ 334 (643)
+.+||+.+.....+...|.. .... .-+++++. ++++||.-.. .+.|.
T Consensus 827 ---------IrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~--------------Nn~Ir 883 (1057)
T PLN02919 827 ---------IKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN--------------NSLIR 883 (1057)
T ss_pred ---------EEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC--------------CCEEE
Confidence 88999988877766543321 0011 11234443 5788887543 35688
Q ss_pred EEECCCCc
Q 006473 335 GFQLDNHR 342 (643)
Q Consensus 335 ~yd~~t~~ 342 (643)
++|+.+.+
T Consensus 884 vid~~~~~ 891 (1057)
T PLN02919 884 YLDLNKGE 891 (1057)
T ss_pred EEECCCCc
Confidence 99998875
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=87.74 E-value=33 Score=38.59 Aligned_cols=126 Identities=14% Similarity=0.080 Sum_probs=63.5
Q ss_pred EEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCc--EEEeccCC-C-CCC-CceeEEEEEC-CEEEEEeeeecCCC
Q 006473 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKG-C-PSP-RSGHRMVLYK-HKIIVFGGFYDTLR 203 (643)
Q Consensus 130 ~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g-~-P~~-Rs~h~~~~~~-~~lyvfGG~~~~~~ 203 (643)
-++.++.||+.... ..++.+|..+.+ |+.-.... . ..+ ......++.+ ++||+...
T Consensus 57 Pvv~~g~vy~~~~~------------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~------ 118 (488)
T cd00216 57 PLVVDGDMYFTTSH------------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF------ 118 (488)
T ss_pred CEEECCEEEEeCCC------------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC------
Confidence 35668899886542 357888988764 87643211 0 000 0111234456 77776322
Q ss_pred ceeeeccEEEEEcCCCc--eEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCC
Q 006473 204 EVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT 281 (643)
Q Consensus 204 ~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t 281 (643)
...|+.+|..+.+ |+.-..... .+......+.++.++.+| +|....... .......+++||..+
T Consensus 119 ----~g~v~AlD~~TG~~~W~~~~~~~~--~~~~~i~ssP~v~~~~v~-vg~~~~~~~-------~~~~~g~v~alD~~T 184 (488)
T cd00216 119 ----DGRLVALDAETGKQVWKFGNNDQV--PPGYTMTGAPTIVKKLVI-IGSSGAEFF-------ACGVRGALRAYDVET 184 (488)
T ss_pred ----CCeEEEEECCCCCEeeeecCCCCc--CcceEecCCCEEECCEEE-Eeccccccc-------cCCCCcEEEEEECCC
Confidence 2468899987654 775433210 001111223344565555 443222100 001234689999865
Q ss_pred C--eeEEe
Q 006473 282 W--EWSKV 287 (643)
Q Consensus 282 ~--~W~~l 287 (643)
. .|..-
T Consensus 185 G~~~W~~~ 192 (488)
T cd00216 185 GKLLWRFY 192 (488)
T ss_pred CceeeEee
Confidence 4 68754
|
The alignment model contains an 8-bladed beta-propeller. |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=87.11 E-value=51 Score=36.30 Aligned_cols=139 Identities=10% Similarity=0.102 Sum_probs=69.5
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWP 233 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P 233 (643)
..+|++|+.++.-+.+.. .+. ... ...+ ++..++++...+. ..++|.+|+.+.....+... .
T Consensus 228 ~~i~i~dl~tg~~~~l~~--~~g-~~~--~~~wSPDG~~La~~~~~~g------~~~Iy~~d~~~~~~~~lt~~-----~ 291 (429)
T PRK01742 228 SQLVVHDLRSGARKVVAS--FRG-HNG--APAFSPDGSRLAFASSKDG------VLNIYVMGANGGTPSQLTSG-----A 291 (429)
T ss_pred cEEEEEeCCCCceEEEec--CCC-ccC--ceeECCCCCEEEEEEecCC------cEEEEEEECCCCCeEeeccC-----C
Confidence 468999998877666543 121 111 1233 4444444432111 23589999988776666443 1
Q ss_pred CCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEe
Q 006473 234 SPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLF 312 (643)
Q Consensus 234 ~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvf 312 (643)
..-...+....+..|++.....+. ..+|.++..+..-..+.. .. +...+. +++.+++
T Consensus 292 ~~~~~~~wSpDG~~i~f~s~~~g~--------------~~I~~~~~~~~~~~~l~~-----~~---~~~~~SpDG~~ia~ 349 (429)
T PRK01742 292 GNNTEPSWSPDGQSILFTSDRSGS--------------PQVYRMSASGGGASLVGG-----RG---YSAQISADGKTLVM 349 (429)
T ss_pred CCcCCEEECCCCCEEEEEECCCCC--------------ceEEEEECCCCCeEEecC-----CC---CCccCCCCCCEEEE
Confidence 111222222223445544332222 368888876554333311 11 112222 4444444
Q ss_pred ccccccccCccccccccCCcEEEEECCCCcEEEeE
Q 006473 313 GGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (643)
Q Consensus 313 GG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (643)
.+. +.++.+|+.+..+..+.
T Consensus 350 ~~~---------------~~i~~~Dl~~g~~~~lt 369 (429)
T PRK01742 350 ING---------------DNVVKQDLTSGSTEVLS 369 (429)
T ss_pred EcC---------------CCEEEEECCCCCeEEec
Confidence 432 24788999998887654
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=86.68 E-value=52 Score=35.80 Aligned_cols=148 Identities=19% Similarity=0.199 Sum_probs=85.2
Q ss_pred eccEEEEECCCC-----cEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCc---EEEe
Q 006473 100 YGDLYRYDVEKQ-----EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ---WEQL 171 (643)
Q Consensus 100 ~ndv~~yd~~~~-----~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~---W~~~ 171 (643)
.+.+|.++.... .|+.+... ..-..+.+...++.+||....... ...+..+++.+.. |..+
T Consensus 251 ~s~v~~~d~~~~~~~~~~~~~l~~~---~~~~~~~v~~~~~~~yi~Tn~~a~--------~~~l~~~~l~~~~~~~~~~~ 319 (414)
T PF02897_consen 251 ESEVYLLDLDDGGSPDAKPKLLSPR---EDGVEYYVDHHGDRLYILTNDDAP--------NGRLVAVDLADPSPAEWWTV 319 (414)
T ss_dssp EEEEEEEECCCTTTSS-SEEEEEES---SSS-EEEEEEETTEEEEEE-TT-T--------T-EEEEEETTSTSGGGEEEE
T ss_pred CCeEEEEeccccCCCcCCcEEEeCC---CCceEEEEEccCCEEEEeeCCCCC--------CcEEEEecccccccccceeE
Confidence 378999999875 89988542 222334444558999998764332 2467888988775 7643
Q ss_pred ccCCCCCC-CceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcC-CCceEEeccCCCCCCCCCccceeEEEe---CC
Q 006473 172 NLKGCPSP-RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD-QFKWQEIKPRFGSMWPSPRSGFQFFVY---QD 246 (643)
Q Consensus 172 ~~~g~P~~-Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~-t~~W~~v~~~~~~~~P~~R~~~s~~~~---~~ 246 (643)
-. .+.. ..--.+...+++|++..=.+ ....|.+|++. ...-..++.+ .. ........ .+
T Consensus 320 l~--~~~~~~~l~~~~~~~~~Lvl~~~~~-------~~~~l~v~~~~~~~~~~~~~~p------~~-g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 320 LI--PEDEDVSLEDVSLFKDYLVLSYREN-------GSSRLRVYDLDDGKESREIPLP------EA-GSVSGVSGDFDSD 383 (414)
T ss_dssp EE----SSSEEEEEEEEETTEEEEEEEET-------TEEEEEEEETT-TEEEEEEESS------SS-SEEEEEES-TT-S
T ss_pred Ec--CCCCceeEEEEEEECCEEEEEEEEC-------CccEEEEEECCCCcEEeeecCC------cc-eEEeccCCCCCCC
Confidence 22 1223 23445556689988775432 25789999998 3333333322 11 11111111 33
Q ss_pred E-EEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEec
Q 006473 247 E-VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (643)
Q Consensus 247 ~-iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~ 288 (643)
. .|.+.+. ..-..+|.||+.+++.+.++
T Consensus 384 ~~~~~~ss~--------------~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 384 ELRFSYSSF--------------TTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp EEEEEEEET--------------TEEEEEEEEETTTTCEEEEE
T ss_pred EEEEEEeCC--------------CCCCEEEEEECCCCCEEEEE
Confidence 3 4444444 34567999999999888775
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=86.23 E-value=32 Score=36.68 Aligned_cols=173 Identities=18% Similarity=0.227 Sum_probs=87.3
Q ss_pred CCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCc--EEEecCCCCC---CCceeeEEEEE-CCEEEEEeC
Q 006473 69 RSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSP---PPRSAHQAVSW-KNYLYIFGG 142 (643)
Q Consensus 69 R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~--W~~l~s~~~P---~pRs~ha~~~~-~~~iyvfGG 142 (643)
-..|.+.+.|. +..||+..= | .+.|++|+..... .........| .|| |.+..- +..+||..-
T Consensus 144 ~h~H~v~~~pd-g~~v~v~dl----G-----~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR--h~~f~pdg~~~Yv~~e 211 (345)
T PF10282_consen 144 PHPHQVVFSPD-GRFVYVPDL----G-----ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR--HLAFSPDGKYAYVVNE 211 (345)
T ss_dssp TCEEEEEE-TT-SSEEEEEET----T-----TTEEEEEEE-TTS-TEEEEEEEECSTTSSEE--EEEE-TTSSEEEEEET
T ss_pred ccceeEEECCC-CCEEEEEec----C-----CCEEEEEEEeCCCceEEEeeccccccCCCCc--EEEEcCCcCEEEEecC
Confidence 34577777773 355666421 2 2578888887765 5432211111 233 333322 568999875
Q ss_pred ccCCCCCCcceecCeEEEEECC--CCcEEEeccCC-CCC---CC-ceeEEEEE--CCEEEEEeeeecCCCceeeeccEEE
Q 006473 143 EFTSPNQERFHHYKDFWMLDLK--TNQWEQLNLKG-CPS---PR-SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYV 213 (643)
Q Consensus 143 ~~~~~~~~~~~~~~dv~~yD~~--t~~W~~~~~~g-~P~---~R-s~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~ 213 (643)
. .+.|.+|+.. +..|+.+.... +|. .. ..+.+++. +++||+--. -.+.|.+
T Consensus 212 ~-----------s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr---------~~~sI~v 271 (345)
T PF10282_consen 212 L-----------SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR---------GSNSISV 271 (345)
T ss_dssp T-----------TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC---------TTTEEEE
T ss_pred C-----------CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec---------cCCEEEE
Confidence 3 2445555444 66666554321 222 12 23333333 567887532 2567888
Q ss_pred EEc--CCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEecc
Q 006473 214 FDL--DQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (643)
Q Consensus 214 yD~--~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~ 289 (643)
|++ .+.+-+.+...+.+ ...||. +.+...+..|||.+..+.. -.++..|..+..+..+..
T Consensus 272 f~~d~~~g~l~~~~~~~~~-G~~Pr~-~~~s~~g~~l~Va~~~s~~--------------v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 272 FDLDPATGTLTLVQTVPTG-GKFPRH-FAFSPDGRYLYVANQDSNT--------------VSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp EEECTTTTTEEEEEEEEES-SSSEEE-EEE-TTSSEEEEEETTTTE--------------EEEEEEETTTTEEEEEEE
T ss_pred EEEecCCCceEEEEEEeCC-CCCccE-EEEeCCCCEEEEEecCCCe--------------EEEEEEeCCCCcEEEecc
Confidence 877 44566555544211 123443 2222336667765544332 235556778889988864
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=85.52 E-value=89 Score=37.33 Aligned_cols=61 Identities=16% Similarity=0.091 Sum_probs=34.0
Q ss_pred CceeeeEEEEeCCCC--eeEEeccCC-----CCCCCceeeEEEEECCe---EEEeccccccccCccccccccCCcEEEEE
Q 006473 268 GIIHSDLWSLDPRTW--EWSKVKKIG-----MPPGPRAGFSMCVHKKR---ALLFGGVVDMEMKGDVIMSLFLNELYGFQ 337 (643)
Q Consensus 268 ~~~~~dv~~yd~~t~--~W~~l~~~g-----~~P~~R~g~s~~~~~~~---iyvfGG~~~~~~~~~~~~~~~~ndl~~yd 337 (643)
..+.+.+..+|+.|. .|..-.... ..|..-.-..+...+++ +++.+..+ ..+|+||
T Consensus 410 n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~--------------G~~~vlD 475 (764)
T TIGR03074 410 EKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQ--------------GQIYVLD 475 (764)
T ss_pred ccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCC--------------CEEEEEE
Confidence 356788999998765 687654211 12222222222222442 55555543 3589999
Q ss_pred CCCCc
Q 006473 338 LDNHR 342 (643)
Q Consensus 338 ~~t~~ 342 (643)
..|.+
T Consensus 476 r~tG~ 480 (764)
T TIGR03074 476 RRTGE 480 (764)
T ss_pred CCCCC
Confidence 98874
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=85.17 E-value=72 Score=36.01 Aligned_cols=62 Identities=6% Similarity=-0.045 Sum_probs=33.7
Q ss_pred CEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEE
Q 006473 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLY 212 (643)
Q Consensus 135 ~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~ 212 (643)
+.+++.||.. ..+.+||+.+.+-...-. +.... -..+.+ ++.+++.|+.+ ..+.
T Consensus 138 ~~iLaSgs~D-----------gtVrIWDl~tg~~~~~l~-~h~~~---V~sla~spdG~lLatgs~D---------g~Ir 193 (493)
T PTZ00421 138 MNVLASAGAD-----------MVVNVWDVERGKAVEVIK-CHSDQ---ITSLEWNLDGSLLCTTSKD---------KKLN 193 (493)
T ss_pred CCEEEEEeCC-----------CEEEEEECCCCeEEEEEc-CCCCc---eEEEEEECCCCEEEEecCC---------CEEE
Confidence 4577777642 357788887765322111 01111 112222 56677777753 3577
Q ss_pred EEEcCCCc
Q 006473 213 VFDLDQFK 220 (643)
Q Consensus 213 ~yD~~t~~ 220 (643)
+||+.+..
T Consensus 194 IwD~rsg~ 201 (493)
T PTZ00421 194 IIDPRDGT 201 (493)
T ss_pred EEECCCCc
Confidence 89988764
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.94 E-value=31 Score=34.76 Aligned_cols=81 Identities=22% Similarity=0.336 Sum_probs=53.0
Q ss_pred CCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCc
Q 006473 65 APSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGE 143 (643)
Q Consensus 65 ~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~ 143 (643)
.|.|-.+. +.++|. .|.|++.||. .-+|+.|+.+++.+..--+. .-+-|+++.- .+.-++.|++
T Consensus 112 ~evPeINa-m~ldP~-enSi~~AgGD----------~~~y~~dlE~G~i~r~~rGH---tDYvH~vv~R~~~~qilsG~E 176 (325)
T KOG0649|consen 112 VEVPEINA-MWLDPS-ENSILFAGGD----------GVIYQVDLEDGRIQREYRGH---TDYVHSVVGRNANGQILSGAE 176 (325)
T ss_pred ccCCccce-eEeccC-CCcEEEecCC----------eEEEEEEecCCEEEEEEcCC---cceeeeeeecccCcceeecCC
Confidence 44455554 555654 5899999983 36899999999888664432 3466777664 3344566776
Q ss_pred cCCCCCCcceecCeEEEEECCCCcEEEe
Q 006473 144 FTSPNQERFHHYKDFWMLDLKTNQWEQL 171 (643)
Q Consensus 144 ~~~~~~~~~~~~~dv~~yD~~t~~W~~~ 171 (643)
++ .+-++|++|.+-.++
T Consensus 177 DG-----------tvRvWd~kt~k~v~~ 193 (325)
T KOG0649|consen 177 DG-----------TVRVWDTKTQKHVSM 193 (325)
T ss_pred Cc-----------cEEEEeccccceeEE
Confidence 54 356788888776544
|
|
| >PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants | Back alignment and domain information |
|---|
Probab=84.50 E-value=22 Score=31.99 Aligned_cols=87 Identities=18% Similarity=0.138 Sum_probs=59.7
Q ss_pred EEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCC
Q 006473 186 VLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265 (643)
Q Consensus 186 ~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~ 265 (643)
++++|-||-..-.. ....+.+.+||+.+.+|+.+..+ ...........++.++|+|.++.-....
T Consensus 2 icinGvly~~a~~~-----~~~~~~IvsFDv~~E~f~~i~~P--~~~~~~~~~~~L~~~~G~L~~v~~~~~~-------- 66 (129)
T PF08268_consen 2 ICINGVLYWLAWSE-----DSDNNVIVSFDVRSEKFRFIKLP--EDPYSSDCSSTLIEYKGKLALVSYNDQG-------- 66 (129)
T ss_pred EEECcEEEeEEEEC-----CCCCcEEEEEEcCCceEEEEEee--eeeccccCccEEEEeCCeEEEEEecCCC--------
Confidence 46788888776551 12357899999999999988774 1123455666777789998887654432
Q ss_pred CCCceeeeEEEEe-CCCCeeEEecc
Q 006473 266 EKGIIHSDLWSLD-PRTWEWSKVKK 289 (643)
Q Consensus 266 ~~~~~~~dv~~yd-~~t~~W~~l~~ 289 (643)
....-++|+++ .....|++...
T Consensus 67 --~~~~~~iWvLeD~~k~~Wsk~~~ 89 (129)
T PF08268_consen 67 --EPDSIDIWVLEDYEKQEWSKKHI 89 (129)
T ss_pred --CcceEEEEEeeccccceEEEEEE
Confidence 02346799995 66789998744
|
Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain. |
| >PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=84.33 E-value=56 Score=34.02 Aligned_cols=104 Identities=19% Similarity=0.262 Sum_probs=59.0
Q ss_pred eeccEEEEECCCCcEEEecCCCCCCCceeeEEEE------ECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEec
Q 006473 99 VYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS------WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLN 172 (643)
Q Consensus 99 ~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~------~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~ 172 (643)
-++.|+.||+.+++-+.+=.-..-.++.-..=++ +++.||+.-+-. +..--+|.+|..++.-+.+.
T Consensus 76 KYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~DG--------h~nLGvy~ldr~~g~~~~L~ 147 (339)
T PF09910_consen 76 KYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARADG--------HANLGVYSLDRRTGKAEKLS 147 (339)
T ss_pred ccceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEecCC--------cceeeeEEEcccCCceeecc
Confidence 4678999999998744331111112222222221 157787765421 12346999999999988887
Q ss_pred cCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCce
Q 006473 173 LKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (643)
Q Consensus 173 ~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W 221 (643)
. .|++. .+.+.+..+| |...- ..-.+.+.+||+.+++|
T Consensus 148 ~--~ps~K---G~~~~D~a~F---~i~~~---~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 148 S--NPSLK---GTLVHDYACF---GINNF---HKGVSGIHCLDLISGKW 185 (339)
T ss_pred C--CCCcC---ceEeeeeEEE---ecccc---ccCCceEEEEEccCCeE
Confidence 6 34432 2222232233 22111 12367899999999999
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.21 E-value=70 Score=35.19 Aligned_cols=138 Identities=17% Similarity=0.233 Sum_probs=67.8
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCC-cEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ-EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFW 159 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~-~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~ 159 (643)
+++|+..|+. ...+-+||..+. --+.+.....|. ..-..+..++.++++|+-.. -+-
T Consensus 79 DG~LlaaGD~---------sG~V~vfD~k~r~iLR~~~ah~apv--~~~~f~~~d~t~l~s~sDd~-----------v~k 136 (487)
T KOG0310|consen 79 DGRLLAAGDE---------SGHVKVFDMKSRVILRQLYAHQAPV--HVTKFSPQDNTMLVSGSDDK-----------VVK 136 (487)
T ss_pred CCeEEEccCC---------cCcEEEeccccHHHHHHHhhccCce--eEEEecccCCeEEEecCCCc-----------eEE
Confidence 6889999884 356778884441 122222222222 22223345889999987432 122
Q ss_pred EEECCCCcEEEeccCCCC-CCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccc
Q 006473 160 MLDLKTNQWEQLNLKGCP-SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG 238 (643)
Q Consensus 160 ~yD~~t~~W~~~~~~g~P-~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~ 238 (643)
.+|+.+.. ......+.. .-|.+ .+.-.++.|++-||+++ .+-.||+.+.+ ..+.....+ .|...
T Consensus 137 ~~d~s~a~-v~~~l~~htDYVR~g-~~~~~~~hivvtGsYDg---------~vrl~DtR~~~-~~v~elnhg---~pVe~ 201 (487)
T KOG0310|consen 137 YWDLSTAY-VQAELSGHTDYVRCG-DISPANDHIVVTGSYDG---------KVRLWDTRSLT-SRVVELNHG---CPVES 201 (487)
T ss_pred EEEcCCcE-EEEEecCCcceeEee-ccccCCCeEEEecCCCc---------eEEEEEeccCC-ceeEEecCC---Cceee
Confidence 34444433 232322211 12222 23334788999999864 35567776653 222222221 22222
Q ss_pred eeEEEeCCEEEEEcCCC
Q 006473 239 FQFFVYQDEVFLYGGYS 255 (643)
Q Consensus 239 ~s~~~~~~~iyv~GG~~ 255 (643)
-.+...+..|...||..
T Consensus 202 vl~lpsgs~iasAgGn~ 218 (487)
T KOG0310|consen 202 VLALPSGSLIASAGGNS 218 (487)
T ss_pred EEEcCCCCEEEEcCCCe
Confidence 22222245666666643
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=84.10 E-value=81 Score=37.84 Aligned_cols=60 Identities=13% Similarity=0.197 Sum_probs=32.4
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEE-EeccCCCCCCCceeEEEEE---CCEEEEEeeeecCCCceeeec
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWE-QLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYN 209 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~-~~~~~g~P~~Rs~h~~~~~---~~~lyvfGG~~~~~~~~~~~~ 209 (643)
++.+++.||.. ..+.+||+.+..-. .+.. . ....++.+ ++.++++|+.+ .
T Consensus 587 ~~~~L~Sgs~D-----------g~v~iWd~~~~~~~~~~~~---~---~~v~~v~~~~~~g~~latgs~d---------g 640 (793)
T PLN00181 587 DPTLLASGSDD-----------GSVKLWSINQGVSIGTIKT---K---ANICCVQFPSESGRSLAFGSAD---------H 640 (793)
T ss_pred CCCEEEEEcCC-----------CEEEEEECCCCcEEEEEec---C---CCeEEEEEeCCCCCEEEEEeCC---------C
Confidence 45677777753 34777887654322 2211 1 11122222 46677777642 4
Q ss_pred cEEEEEcCCC
Q 006473 210 DLYVFDLDQF 219 (643)
Q Consensus 210 dv~~yD~~t~ 219 (643)
.+.+||+.+.
T Consensus 641 ~I~iwD~~~~ 650 (793)
T PLN00181 641 KVYYYDLRNP 650 (793)
T ss_pred eEEEEECCCC
Confidence 6888998654
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=84.00 E-value=71 Score=34.98 Aligned_cols=122 Identities=14% Similarity=0.119 Sum_probs=61.4
Q ss_pred CceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCC--CCCc-eeeEEEEECCEEEEEeCccCC
Q 006473 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNS--PPPR-SAHQAVSWKNYLYIFGGEFTS 146 (643)
Q Consensus 70 ~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~--P~pR-s~ha~~~~~~~iyvfGG~~~~ 146 (643)
.-..+.+.|...++.|++|-. ..|+.-+-.-.+|.....+.. +..+ ...++...++.+|++|-.
T Consensus 89 ~L~~V~F~~~d~~~GwAVG~~----------G~IL~T~DGG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~--- 155 (398)
T PLN00033 89 VLLDIAFVPDDPTHGFLLGTR----------QTLLETKDGGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKP--- 155 (398)
T ss_pred ceEEEEeccCCCCEEEEEcCC----------CEEEEEcCCCCCceECccCcccccccccceeeeEEECCEEEEEcCc---
Confidence 344555533235688888872 233433334568997643211 1111 234444457788887531
Q ss_pred CCCCcceecCeEEEEECCCCcEEEeccCC-CCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEe
Q 006473 147 PNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (643)
Q Consensus 147 ~~~~~~~~~~dv~~yD~~t~~W~~~~~~g-~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (643)
.-+++=.-.-.+|+.+.... +|.. .+..+.+ .+.++++|.. ..+++-+-.-.+|+.+
T Consensus 156 ---------G~il~T~DgG~tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~----------G~v~~S~D~G~tW~~~ 214 (398)
T PLN00033 156 ---------AILLHTSDGGETWERIPLSPKLPGE--PVLIKATGPKSAEMVTDE----------GAIYVTSNAGRNWKAA 214 (398)
T ss_pred ---------eEEEEEcCCCCCceECccccCCCCC--ceEEEEECCCceEEEecc----------ceEEEECCCCCCceEc
Confidence 12223233356899886521 1222 2333334 4567777642 2244444445689987
Q ss_pred c
Q 006473 225 K 225 (643)
Q Consensus 225 ~ 225 (643)
.
T Consensus 215 ~ 215 (398)
T PLN00033 215 V 215 (398)
T ss_pred c
Confidence 3
|
|
| >PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues | Back alignment and domain information |
|---|
Probab=83.60 E-value=0.77 Score=45.84 Aligned_cols=18 Identities=11% Similarity=0.102 Sum_probs=9.1
Q ss_pred ceeEEEEECCEEEEEeee
Q 006473 181 SGHRMVLYKHKIIVFGGF 198 (643)
Q Consensus 181 s~h~~~~~~~~lyvfGG~ 198 (643)
....++.....++-.||.
T Consensus 124 ~da~C~EC~R~vw~hGGr 141 (314)
T PF06524_consen 124 QDAVCIECERGVWDHGGR 141 (314)
T ss_pred CCcEeeeeecccccCCCe
Confidence 333444445556666664
|
The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=83.51 E-value=58 Score=33.58 Aligned_cols=191 Identities=15% Similarity=0.102 Sum_probs=102.2
Q ss_pred cEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC
Q 006473 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (643)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (643)
-+-++++++.+-+..+-+. -.+-.+.-..++ .+.|+..|-. . ++. ++|+.++.-+..+. |..
T Consensus 125 aI~R~dpkt~evt~f~lp~-~~a~~nlet~vfD~~G~lWFt~q~-G--------~yG---rLdPa~~~i~vfpa---PqG 188 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLPL-EHADANLETAVFDPWGNLWFTGQI-G--------AYG---RLDPARNVISVFPA---PQG 188 (353)
T ss_pred eeEEecCcccceEEeeccc-ccCCCcccceeeCCCccEEEeecc-c--------cce---ecCcccCceeeecc---CCC
Confidence 6788999888877665321 112222223333 3566666532 1 112 67777776555433 222
Q ss_pred CceeEEEE-ECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCC
Q 006473 180 RSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEV 258 (643)
Q Consensus 180 Rs~h~~~~-~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~ 258 (643)
-.-.++|+ -++.+|+--= +-|-+-+.|+.+..=..++.+. ......|. ..+--.+.+++.--.
T Consensus 189 ~gpyGi~atpdGsvwyasl---------agnaiaridp~~~~aev~p~P~-~~~~gsRr--iwsdpig~~wittwg---- 252 (353)
T COG4257 189 GGPYGICATPDGSVWYASL---------AGNAIARIDPFAGHAEVVPQPN-ALKAGSRR--IWSDPIGRAWITTWG---- 252 (353)
T ss_pred CCCcceEECCCCcEEEEec---------cccceEEcccccCCcceecCCC-cccccccc--cccCccCcEEEeccC----
Confidence 22223333 4777776411 1345667777776444444321 10011111 001114566665221
Q ss_pred CCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEE
Q 006473 259 STDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQ 337 (643)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd 337 (643)
...+++|||.+..|..-+-++.- +| ..+|-+. .+++++--- -.+.|.+||
T Consensus 253 ------------~g~l~rfdPs~~sW~eypLPgs~--ar-pys~rVD~~grVW~sea--------------~agai~rfd 303 (353)
T COG4257 253 ------------TGSLHRFDPSVTSWIEYPLPGSK--AR-PYSMRVDRHGRVWLSEA--------------DAGAIGRFD 303 (353)
T ss_pred ------------CceeeEeCcccccceeeeCCCCC--CC-cceeeeccCCcEEeecc--------------ccCceeecC
Confidence 23488999999999988654332 23 2344443 456655211 146699999
Q ss_pred CCCCcEEEeEecCCCc
Q 006473 338 LDNHRWYPLELRKEKS 353 (643)
Q Consensus 338 ~~t~~W~~l~~~~~~~ 353 (643)
+++.+++.++...+.+
T Consensus 304 peta~ftv~p~pr~n~ 319 (353)
T COG4257 304 PETARFTVLPIPRPNS 319 (353)
T ss_pred cccceEEEecCCCCCC
Confidence 9999999999865543
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=83.17 E-value=78 Score=34.83 Aligned_cols=182 Identities=11% Similarity=0.008 Sum_probs=89.7
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE---CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP 177 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~---~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P 177 (643)
..+|++|+.+++=..++.. + .... ...+ +..|++...... ..++|.+|..+....++... .
T Consensus 220 ~~I~~~dl~~g~~~~l~~~--~--g~~~-~~~~SPDG~~la~~~~~~g---------~~~Iy~~d~~~~~~~~lt~~--~ 283 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANF--K--GSNS-APAWSPDGRTLAVALSRDG---------NSQIYTVNADGSGLRRLTQS--S 283 (427)
T ss_pred cEEEEEECCCCCEEEeecC--C--CCcc-ceEECCCCCEEEEEEccCC---------CceEEEEECCCCCcEECCCC--C
Confidence 4699999988876666431 1 1111 2222 345554433211 25799999988877666431 1
Q ss_pred CCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCC
Q 006473 178 SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKE 257 (643)
Q Consensus 178 ~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~ 257 (643)
.........-+++.++|..... + ...+|.++..+.....+.... .......+...+..|++.....+.
T Consensus 284 -~~~~~~~wSpDG~~l~f~s~~~-g-----~~~Iy~~~~~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~s~~~g~ 351 (427)
T PRK02889 284 -GIDTEPFFSPDGRSIYFTSDRG-G-----APQIYRMPASGGAAQRVTFTG-----SYNTSPRISPDGKLLAYISRVGGA 351 (427)
T ss_pred -CCCcCeEEcCCCCEEEEEecCC-C-----CcEEEEEECCCCceEEEecCC-----CCcCceEECCCCCEEEEEEccCCc
Confidence 1111111112444334432111 1 246888888877777765331 111112222224455544332211
Q ss_pred CCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEE
Q 006473 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQ 337 (643)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd 337 (643)
..++++|+.+.....+...+. ...-...-+++.++|..... -...+++++
T Consensus 352 --------------~~I~v~d~~~g~~~~lt~~~~-----~~~p~~spdg~~l~~~~~~~-----------g~~~l~~~~ 401 (427)
T PRK02889 352 --------------FKLYVQDLATGQVTALTDTTR-----DESPSFAPNGRYILYATQQG-----------GRSVLAAVS 401 (427)
T ss_pred --------------EEEEEEECCCCCeEEccCCCC-----ccCceECCCCCEEEEEEecC-----------CCEEEEEEE
Confidence 268999988887776643211 01111222566666665422 023477777
Q ss_pred CCC
Q 006473 338 LDN 340 (643)
Q Consensus 338 ~~t 340 (643)
+..
T Consensus 402 ~~g 404 (427)
T PRK02889 402 SDG 404 (427)
T ss_pred CCC
Confidence 743
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=82.70 E-value=80 Score=34.59 Aligned_cols=68 Identities=12% Similarity=0.130 Sum_probs=36.7
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~ 159 (643)
++++|++|-. .-++.=.-.-.+|+.+..+. ..|-..+..+++ ++.+++.|.. ..++
T Consensus 146 ~~~g~~vG~~----------G~il~T~DgG~tW~~~~~~~-~~p~~~~~i~~~~~~~~~ivg~~------------G~v~ 202 (398)
T PLN00033 146 GKEGWIIGKP----------AILLHTSDGGETWERIPLSP-KLPGEPVLIKATGPKSAEMVTDE------------GAIY 202 (398)
T ss_pred CCEEEEEcCc----------eEEEEEcCCCCCceECcccc-CCCCCceEEEEECCCceEEEecc------------ceEE
Confidence 5667777541 23343333346899886432 112223334444 4567888742 2355
Q ss_pred EEECCCCcEEEe
Q 006473 160 MLDLKTNQWEQL 171 (643)
Q Consensus 160 ~yD~~t~~W~~~ 171 (643)
+-+-.-.+|+.+
T Consensus 203 ~S~D~G~tW~~~ 214 (398)
T PLN00033 203 VTSNAGRNWKAA 214 (398)
T ss_pred EECCCCCCceEc
Confidence 555556689986
|
|
| >PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants | Back alignment and domain information |
|---|
Probab=82.00 E-value=27 Score=31.36 Aligned_cols=85 Identities=14% Similarity=0.221 Sum_probs=56.3
Q ss_pred EECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccC-CCCCCCceeEEEEECCEEEEEeeeecCCCceeeecc
Q 006473 132 SWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK-GCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYND 210 (643)
Q Consensus 132 ~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~-g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~d 210 (643)
.++|.||-..-. .. ...+-+..||+.+.+|+.+..+ ...........+.++++|-++.-..... ...-+
T Consensus 3 cinGvly~~a~~-~~------~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~---~~~~~ 72 (129)
T PF08268_consen 3 CINGVLYWLAWS-ED------SDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE---PDSID 72 (129)
T ss_pred EECcEEEeEEEE-CC------CCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC---cceEE
Confidence 357777776654 11 1246799999999999988763 1134445567777899988875543211 12457
Q ss_pred EEEE-EcCCCceEEecc
Q 006473 211 LYVF-DLDQFKWQEIKP 226 (643)
Q Consensus 211 v~~y-D~~t~~W~~v~~ 226 (643)
+|++ |.....|.+...
T Consensus 73 iWvLeD~~k~~Wsk~~~ 89 (129)
T PF08268_consen 73 IWVLEDYEKQEWSKKHI 89 (129)
T ss_pred EEEeeccccceEEEEEE
Confidence 8888 566788988755
|
Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=81.69 E-value=40 Score=34.69 Aligned_cols=138 Identities=14% Similarity=0.105 Sum_probs=78.1
Q ss_pred EEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC-Cce
Q 006473 105 RYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP-RSG 182 (643)
Q Consensus 105 ~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~-Rs~ 182 (643)
++||.++.-+..+.+ ..-.-+.+|+. ++.+|+..= .-|-+-+.|+.+..=+.++. |.+ ..+
T Consensus 172 rLdPa~~~i~vfpaP---qG~gpyGi~atpdGsvwyasl-----------agnaiaridp~~~~aev~p~---P~~~~~g 234 (353)
T COG4257 172 RLDPARNVISVFPAP---QGGGPYGICATPDGSVWYASL-----------AGNAIARIDPFAGHAEVVPQ---PNALKAG 234 (353)
T ss_pred ecCcccCceeeeccC---CCCCCcceEECCCCcEEEEec-----------cccceEEcccccCCcceecC---CCccccc
Confidence 567776665555443 22233445555 677777521 12456678887776555543 333 222
Q ss_pred eEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCC
Q 006473 183 HRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVST 260 (643)
Q Consensus 183 h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~ 260 (643)
.+-+.. -+++++-- .-...+++||+++..|..-+.+. ..+|-....+--.+++++.---
T Consensus 235 sRriwsdpig~~witt---------wg~g~l~rfdPs~~sW~eypLPg----s~arpys~rVD~~grVW~sea~------ 295 (353)
T COG4257 235 SRRIWSDPIGRAWITT---------WGTGSLHRFDPSVTSWIEYPLPG----SKARPYSMRVDRHGRVWLSEAD------ 295 (353)
T ss_pred ccccccCccCcEEEec---------cCCceeeEeCcccccceeeeCCC----CCCCcceeeeccCCcEEeeccc------
Confidence 222222 34566541 01457999999999999887662 2233332223336666663221
Q ss_pred ccCCCCCCceeeeEEEEeCCCCeeEEec
Q 006473 261 DKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (643)
Q Consensus 261 ~~~~~~~~~~~~dv~~yd~~t~~W~~l~ 288 (643)
.+.+.+||+.+.+.+.+.
T Consensus 296 ----------agai~rfdpeta~ftv~p 313 (353)
T COG4257 296 ----------AGAIGRFDPETARFTVLP 313 (353)
T ss_pred ----------cCceeecCcccceEEEec
Confidence 234789999999998874
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=81.47 E-value=75 Score=33.42 Aligned_cols=193 Identities=13% Similarity=0.139 Sum_probs=85.0
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~ 159 (643)
++..||.|-. .-+++-.-.-.+|..+.... +.|...+.++++ .+.++++|.. ..+|
T Consensus 71 ~~~g~ivG~~----------g~ll~T~DgG~tW~~v~l~~-~lpgs~~~i~~l~~~~~~l~~~~------------G~iy 127 (302)
T PF14870_consen 71 GNEGWIVGEP----------GLLLHTTDGGKTWERVPLSS-KLPGSPFGITALGDGSAELAGDR------------GAIY 127 (302)
T ss_dssp TTEEEEEEET----------TEEEEESSTTSS-EE----T-T-SS-EEEEEEEETTEEEEEETT--------------EE
T ss_pred CCceEEEcCC----------ceEEEecCCCCCcEEeecCC-CCCCCeeEEEEcCCCcEEEEcCC------------CcEE
Confidence 6788887651 12444333456899986332 345555655555 6678887643 2344
Q ss_pred EEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccc
Q 006473 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG 238 (643)
Q Consensus 160 ~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~ 238 (643)
+=.-.-.+|+.+... ...+-...... ++.+++++.. + +-+...|+-...|...... ..|.-
T Consensus 128 ~T~DgG~tW~~~~~~---~~gs~~~~~r~~dG~~vavs~~-G--------~~~~s~~~G~~~w~~~~r~------~~~ri 189 (302)
T PF14870_consen 128 RTTDGGKTWQAVVSE---TSGSINDITRSSDGRYVAVSSR-G--------NFYSSWDPGQTTWQPHNRN------SSRRI 189 (302)
T ss_dssp EESSTTSSEEEEE-S-------EEEEEE-TTS-EEEEETT-S--------SEEEEE-TT-SS-EEEE--------SSS-E
T ss_pred EeCCCCCCeeEcccC---CcceeEeEEECCCCcEEEEECc-c--------cEEEEecCCCccceEEccC------cccee
Confidence 444455689987642 12222222223 5566555532 1 1233557777789877654 34444
Q ss_pred eeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEe--CCCCeeEEeccCCCCCCCcee-eEEEEE-CCeEEEec
Q 006473 239 FQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLD--PRTWEWSKVKKIGMPPGPRAG-FSMCVH-KKRALLFG 313 (643)
Q Consensus 239 ~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd--~~t~~W~~l~~~g~~P~~R~g-~s~~~~-~~~iyvfG 313 (643)
.+|... ++.|+++. ..+. +++-+ -...+|.+.... .+....+ ..+++. .+.+++.|
T Consensus 190 q~~gf~~~~~lw~~~-~Gg~----------------~~~s~~~~~~~~w~~~~~~--~~~~~~~~ld~a~~~~~~~wa~g 250 (302)
T PF14870_consen 190 QSMGFSPDGNLWMLA-RGGQ----------------IQFSDDPDDGETWSEPIIP--IKTNGYGILDLAYRPPNEIWAVG 250 (302)
T ss_dssp EEEEE-TTS-EEEEE-TTTE----------------EEEEE-TTEEEEE---B-T--TSS--S-EEEEEESSSS-EEEEE
T ss_pred hhceecCCCCEEEEe-CCcE----------------EEEccCCCCccccccccCC--cccCceeeEEEEecCCCCEEEEe
Confidence 445444 67787765 3332 23333 344578773321 1122233 345555 57899988
Q ss_pred cccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 314 GVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 314 G~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
|... |++=.=.-.+|.+...
T Consensus 251 g~G~---------------l~~S~DgGktW~~~~~ 270 (302)
T PF14870_consen 251 GSGT---------------LLVSTDGGKTWQKDRV 270 (302)
T ss_dssp STT----------------EEEESSTTSS-EE-GG
T ss_pred CCcc---------------EEEeCCCCccceECcc
Confidence 8532 3333333468987765
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=81.32 E-value=1e+02 Score=34.84 Aligned_cols=53 Identities=11% Similarity=0.004 Sum_probs=27.8
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCc
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ 167 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~ 167 (643)
+.+.+||+.+.+-...-... ..+ -.+++.. ++.+++.|+.. ..+.+||+.++.
T Consensus 148 gtVrIWDl~tg~~~~~l~~h-~~~--V~sla~spdG~lLatgs~D-----------g~IrIwD~rsg~ 201 (493)
T PTZ00421 148 MVVNVWDVERGKAVEVIKCH-SDQ--ITSLEWNLDGSLLCTTSKD-----------KKLNIIDPRDGT 201 (493)
T ss_pred CEEEEEECCCCeEEEEEcCC-CCc--eEEEEEECCCCEEEEecCC-----------CEEEEEECCCCc
Confidence 35778888876433211111 111 1122222 56677777653 357789988765
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=81.04 E-value=94 Score=34.32 Aligned_cols=173 Identities=16% Similarity=0.253 Sum_probs=88.6
Q ss_pred cCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCC
Q 006473 155 YKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (643)
Q Consensus 155 ~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~ 232 (643)
..|++.++.+.++-.++...| |.....+-| ++.|+|.--+..... -...+|..+...-+...+..
T Consensus 106 taDly~v~~e~Ge~kRiTyfG----r~fT~VaG~~~dg~iiV~TD~~tPF~---q~~~lYkv~~dg~~~e~Lnl------ 172 (668)
T COG4946 106 TADLYVVPSEDGEAKRITYFG----RRFTRVAGWIPDGEIIVSTDFHTPFS---QWTELYKVNVDGIKTEPLNL------ 172 (668)
T ss_pred cccEEEEeCCCCcEEEEEEec----cccceeeccCCCCCEEEEeccCCCcc---cceeeeEEccCCceeeeccC------
Confidence 478999999999999888743 444444444 677887765543211 12233333333222222211
Q ss_pred CCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccC-CCCCCCceeeEEEEECCeEEE
Q 006473 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI-GMPPGPRAGFSMCVHKKRALL 311 (643)
Q Consensus 233 P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~-g~~P~~R~g~s~~~~~~~iyv 311 (643)
.-.+..+..+.++++|-..... +-=..-+|.....+|+=.....+.+++-.+ +... +-.++++++|.
T Consensus 173 ----Gpathiv~~dg~ivigRntydL--P~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS------~PmIV~~RvYF 240 (668)
T COG4946 173 ----GPATHIVIKDGIIVIGRNTYDL--PHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVS------SPMIVGERVYF 240 (668)
T ss_pred ----CceeeEEEeCCEEEEccCcccC--cccccccCCccceEEEEecCCcceeeeeecCCCcC------CceEEcceEEE
Confidence 1122334455577777433220 000112233445577766666667766543 1111 11344555555
Q ss_pred ecccccc---------------------------ccCccccccccCCcEEEEECCCCcEEEeEecCCC
Q 006473 312 FGGVVDM---------------------------EMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEK 352 (643)
Q Consensus 312 fGG~~~~---------------------------~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~ 352 (643)
+--..+. ...+..+.-..-.++|.|||++.+-.+|...-+.
T Consensus 241 lsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl 308 (668)
T COG4946 241 LSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPL 308 (668)
T ss_pred EecccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEEecCCcEEEeCCCcCcceeeecCCcc
Confidence 4311110 1112233333356899999999999999886443
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.21 E-value=31 Score=38.07 Aligned_cols=52 Identities=21% Similarity=0.349 Sum_probs=36.0
Q ss_pred cEEEEEcCC----CceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCee
Q 006473 210 DLYVFDLDQ----FKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284 (643)
Q Consensus 210 dv~~yD~~t----~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W 284 (643)
.|..||... ..|..... .|-.|-+++..+..|++-=|+++. ++.||+....-
T Consensus 188 ~VtlwDv~g~sp~~~~~~~Hs-------AP~~gicfspsne~l~vsVG~Dkk----------------i~~yD~~s~~s 243 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASEAHS-------APCRGICFSPSNEALLVSVGYDKK----------------INIYDIRSQAS 243 (673)
T ss_pred eEEEEeccCCCcccchhhhcc-------CCcCcceecCCccceEEEecccce----------------EEEeecccccc
Confidence 456666653 23544443 345677788889999999999887 89999875443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 643 | ||||
| 2woz_A | 318 | The Novel Beta-Propeller Of The Btb-Kelch Protein K | 5e-05 | ||
| 4asc_A | 315 | Crystal Structure Of The Kelch Domain Of Human Kbtb | 3e-04 |
| >pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1 Provides The Binding Site For Lasp-1 That Is Necessary For Pseudopodia Extension Length = 318 | Back alignment and structure |
|
| >pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5 Length = 315 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 4e-36
Identities = 47/285 (16%), Positives = 95/285 (33%), Gaps = 35/285 (12%)
Query: 41 DAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVY 100
+ + LSI ++ K + V + P R + + +L+L GG
Sbjct: 413 EILQLSIHYDKIDMKNIEVSSS-EVPVARMCHTFTTIS-RNNQLLLIGGR--KAPHQG-L 467
Query: 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKN-YLYIFGGEFTSPNQERFHHYKDFW 159
D + +D++ +EW +I + R H A S + + I GG P
Sbjct: 468 SDNWIFDMKTREWSMI--KSLSHTRFRHSACSLPDGNVLILGGVTEGP---------AML 516
Query: 160 MLDLKTNQWEQLNLKG-CPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFD 215
+ ++ ++ + K + + + I+ GG + V ++ +D
Sbjct: 517 LYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYD 576
Query: 216 LDQFKWQEIKPRFGSMWPSPRSGFQF-FVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDL 274
+ + R G Q ++ ++ + GG S D+ + +
Sbjct: 577 AENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDR--------TNSI 628
Query: 275 WSLDPRTWEWSKVKKIGMPPGP----RAGFSMC-VHKKRALLFGG 314
SLDP + + + AGFS+ + GG
Sbjct: 629 ISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGG 673
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 1e-27
Identities = 33/264 (12%), Positives = 70/264 (26%), Gaps = 46/264 (17%)
Query: 91 FYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQE 150
F + ++ E + P R N ++ GG
Sbjct: 354 FAFTQGFLFDRSISEINLTVDEDYQLLECECPINRKFGDVDVAGNDVFYMGGSNPYR--- 410
Query: 151 RFHHYKDFWMLDLKTNQWEQLNLK----GCPSPRSGHRMVLYKH--KIIVFGGFYDTLRE 204
+ L + ++ + N++ P R H ++++ GG
Sbjct: 411 ----VNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKA---P 463
Query: 205 VRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQD-EVFLYGGYSKEVSTDKN 263
+ +D ++FD+ +W IK R D V + GG ++
Sbjct: 464 HQGLSDNWIFDMKTREWSMIKS-----LSHTRFRHSACSLPDGNVLILGGVTEG------ 512
Query: 264 QSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH----KKRALLFGGVVDME 319
+ + + V + K+ +L GG +D
Sbjct: 513 --------PAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQT 564
Query: 320 MKGDVIMSLFLNELYGFQLDNHRW 343
D ++ + +N
Sbjct: 565 TVSDKA------IIFKYDAENATE 582
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 1e-29
Identities = 43/252 (17%), Positives = 81/252 (32%), Gaps = 53/252 (21%)
Query: 119 PNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDL--KTNQWEQLNLKGC 176
P +P P + + +YI G + ++ LD K +W L
Sbjct: 4 PETPVPFKSGTGAIDNDTVYIGLGSAGT----------AWYKLDTQAKDKKWTA--LAAF 51
Query: 177 P-SPRSGHRMVLYKHKIIVFGGF-YDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234
P PR + VFGG ++ + +ND++ ++ W ++ S P
Sbjct: 52 PGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKL----MSHAPM 107
Query: 235 PRSGFQFFVYQDEVFLYGGYSKEVSTD--------KNQSEK---------------GIIH 271
+G FV+ + ++ GG ++ + S +
Sbjct: 108 GMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFN 167
Query: 272 SDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLN 331
L S DP T +WS + P AG ++ + L G E K + +
Sbjct: 168 KFLLSFDPSTQQWSYAGE--SPWYGTAGAAVVNKGDKTWLING----EAKPGL----RTD 217
Query: 332 ELYGFQLDNHRW 343
++ +
Sbjct: 218 AVFELDFTGNNL 229
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 116 bits (291), Expect = 2e-28
Identities = 47/325 (14%), Positives = 92/325 (28%), Gaps = 71/325 (21%)
Query: 64 PAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPP 123
P P + + + + + G G Y + ++W ++
Sbjct: 5 ETPVPFKSGTGA---IDNDTVYIGLG--SAGTAWYKL----DTQAKDKKWTALA-AFPGG 54
Query: 124 PRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGH 183
PR + LY+FGG + + D + KTN W +L P +GH
Sbjct: 55 PRDQATSAFIDGNLYVFGGIGKNSEGLT-QVFNDVHKYNPKTNSWVKLM-SHAPMGMAGH 112
Query: 184 RMVLYKHKIIVFGGF-----------YDTLR-------------------EVRYYNDLYV 213
++ K V GG + + + L
Sbjct: 113 VTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLS 172
Query: 214 FDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSD 273
FD +W G +G D+ +L G +K G+
Sbjct: 173 FDPSTQQWSYA----GESPWYGTAGAAVVNKGDKTWLINGEAKP----------GLRTDA 218
Query: 274 LWSL--DPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKG--------- 322
++ L +W+K+ + P G AG + + GG +
Sbjct: 219 VFELDFTGNNLKWNKLAPVSSPDG-VAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYA 277
Query: 323 -DVIMSLFLNELYGFQLDNHRWYPL 346
+ + + +++ + +W
Sbjct: 278 HEGLKKSYSTDIHLWHNG--KWDKS 300
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 113 bits (283), Expect = 2e-27
Identities = 45/296 (15%), Positives = 81/296 (27%), Gaps = 54/296 (18%)
Query: 84 LILYGGEFYNGNKTY-VYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGG 142
L ++GG N V+ D+++Y+ + W + S P + H Y+ GG
Sbjct: 68 LYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA-PMGMAGHVTFVHNGKAYVTGG 126
Query: 143 ---------------------EFTSPNQERFHH-------YKDFWMLDLKTNQWEQLNLK 174
N F K D T QW
Sbjct: 127 VNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYA--G 184
Query: 175 GCP-SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWP 233
P +G +V K + G + + ++ D + P
Sbjct: 185 ESPWYGTAGAAVVNKGDKTWLINGE---AKPGLRTDAVFELDFTGNNLKW-NKLAPVSSP 240
Query: 234 SPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIH---SDLWSL---DPRTWEWSKV 287
+G + D + GG + S + Q+ K H +S +W K
Sbjct: 241 DGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS 300
Query: 288 KKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343
++ RA L+ GG G + + + +++
Sbjct: 301 GEL---SQGRAYGVSLPWNNSLLIIGGETA---GGKA-----VTDSVLITVKDNKV 345
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 71.1 bits (174), Expect = 2e-13
Identities = 22/152 (14%), Positives = 51/152 (33%), Gaps = 21/152 (13%)
Query: 84 LILYGGEFYNGNKT-YVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGG 142
L GE G +T V+ + +W ++ +SP + A + L GG
Sbjct: 203 TWLINGEAKPGLRTDAVF--ELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGG 260
Query: 143 EFTSPNQERFHHYKDFW-----------MLDLKTNQWEQL-NLKGCPSPRSGHRMVLYKH 190
++E + + K++ + +W++ L R+ + + +
Sbjct: 261 AGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL---SQGRAYGVSLPWNN 317
Query: 191 KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222
+++ GG + D + + K
Sbjct: 318 SLLIIGGETA---GGKAVTDSVLITVKDNKVT 346
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 8e-27
Identities = 35/200 (17%), Positives = 66/200 (33%), Gaps = 25/200 (12%)
Query: 105 RYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLK 164
YD +W + + H +S +Y GG+ ++ + K
Sbjct: 131 CYDPVAAKWSEVKNLPIK--VYGHNVISHNGMIYCLGGKTDDKK-----CTNRVFIYNPK 183
Query: 165 TNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224
W+ L +PRS + ++K KI++ GG + + FDL KW+ +
Sbjct: 184 KGDWKDL--APMKTPRSMFGVAIHKGKIVIAGGVTED----GLSASVEAFDLKTNKWEVM 237
Query: 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284
P RS ++ GG++ K + + +D+W + EW
Sbjct: 238 TE----F-PQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEV--NDIWKYEDDKKEW 290
Query: 285 SKVKKIGMPPGPRAGFSMCV 304
+ + R
Sbjct: 291 AGM-----LKEIRYASGASC 305
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 44/285 (15%), Positives = 110/285 (38%), Gaps = 37/285 (12%)
Query: 64 PAPSPRSNCSLNINPLKETELILYGGEFYNGNKTY--VYGDLYRYDVEKQEWKVISSPNS 121
PR++ S+ ++ ++ + GG + + + ++ D EW + S
Sbjct: 42 AEQIPRNHSSIVT---QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPS 98
Query: 122 PPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSPR 180
R + +Y+ G+ + + D +W ++ NL P
Sbjct: 99 A--RCLFGLGEVDDKIYVVAGK----DLQTEASLDSVLCYDPVAAKWSEVKNL---PIKV 149
Query: 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240
GH ++ + I GG D + N +++++ + W+++ P M +PRS F
Sbjct: 150 YGHNVISHNGMIYCLGGKTDDKK---CTNRVFIYNPKKGDWKDLAP----M-KTPRSMFG 201
Query: 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF 300
+++ ++ + GG +++ + + + + D +T +W + + P R+
Sbjct: 202 VAIHKGKIVIAGGVTEDGLS-----------ASVEAFDLKTNKWEVMTEF---PQERSSI 247
Query: 301 SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345
S+ GG ++++ +N+++ ++ D W
Sbjct: 248 SLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG 292
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 2e-23
Identities = 43/220 (19%), Positives = 82/220 (37%), Gaps = 27/220 (12%)
Query: 98 YVYGD--LYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHY 155
+ D YD + E + + PR+ V+ +N +Y+ GG + +
Sbjct: 19 LLVNDTAAVAYDPMENECYLTALAE-QIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQ 77
Query: 156 KDFWMLDLKTNQWEQL-NLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214
F+ LD +++W L L PS R + KI V G + + +
Sbjct: 78 SYFFQLDNVSSEWVGLPPL---PSARCLFGLGEVDDKIYVVAGKDLQTEA--SLDSVLCY 132
Query: 215 DLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDL 274
D KW E+K + P G + ++ GG + + + +
Sbjct: 133 DPVAAKWSEVKN----L-PIKVYGHNVISHNGMIYCLGGKTDDKK----------CTNRV 177
Query: 275 WSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
+ +P+ +W + M PR+ F + +HK + ++ GG
Sbjct: 178 FIYNPKKGDWKDLAP--M-KTPRSMFGVAIHKGKIVIAGG 214
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 1e-25
Identities = 34/211 (16%), Positives = 63/211 (29%), Gaps = 25/211 (11%)
Query: 105 RYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLK 164
YD +W H +S + +Y+ GG S + + D K
Sbjct: 121 CYDRLSFKWGESDPLPYV--VYGHTVLSHMDLVYVIGG-KGSDRK----CLNKMCVYDPK 173
Query: 165 TNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224
+W++L + RS ++ +IIV G DT + V+ + KW
Sbjct: 174 KFEWKEL--APMQTARSLFGATVHDGRIIVAAGVTDT----GLTSSAEVYSITDNKWAPF 227
Query: 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284
+ P RS ++ GG++ + + +D+W + +W
Sbjct: 228 EA----F-PQERSSLSLVSLVGTLYAIGGFATLETESGELVPTEL--NDIWRYNEEEKKW 280
Query: 285 SKVKKIGMPPGPRAGFSMCVHKKRALLFGGV 315
V R +
Sbjct: 281 EGV-----LREIAYAAGATFLPVRLNVLRLT 306
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 46/220 (20%), Positives = 82/220 (37%), Gaps = 26/220 (11%)
Query: 98 YVYG--DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHY 155
++ YD E S + P++ V+ +N +++ GG F + + +
Sbjct: 8 FMISEEGAVAYDPAANECYCASLSS-QVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMS 66
Query: 156 KDFWMLDLKTNQWEQL-NLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214
F D ++W + L PSPR + + I V GG + R + + +
Sbjct: 67 AYFLQFDHLDSEWLGMPPL---PSPRCLFGLGEALNSIYVVGG-REIKDGERCLDSVMCY 122
Query: 215 DLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDL 274
D FKW E P + P G + D V++ GG + + +
Sbjct: 123 DRLSFKWGESDP----L-PYVVYGHTVLSHMDLVYVIGGKGSDRK----------CLNKM 167
Query: 275 WSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
DP+ +EW ++ M R+ F VH R ++ G
Sbjct: 168 CVYDPKKFEWKELAP--M-QTARSLFGATVHDGRIIVAAG 204
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 1e-24
Identities = 53/286 (18%), Positives = 103/286 (36%), Gaps = 36/286 (12%)
Query: 64 PAPSPRSNCSLNINPLKETELILYGGEFYNG--NKTYVYGDLYRYDVEKQEWKVISSPNS 121
+ P+++ SL KE ++ + GG FYN + + ++D EW + S
Sbjct: 31 SSQVPKNHVSLVT---KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPS 87
Query: 122 PPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSPR 180
P R N +Y+ GG + D + +W + L P
Sbjct: 88 P--RCLFGLGEALNSIYVVGGREIKDGERCL---DSVMCYDRLSFKWGESDPL---PYVV 139
Query: 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240
GH ++ + + V GG + N + V+D +F+W+E+ P M + RS F
Sbjct: 140 YGHTVLSHMDLVYVIGGKGSD---RKCLNKMCVYDPKKFEWKELAP----M-QTARSLFG 191
Query: 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF 300
V+ + + G + S +W+ + P R+
Sbjct: 192 ATVHDGRIIVAAGVTDTGL-----------TSSAEVYSITDNKWAPFEAF---PQERSSL 237
Query: 301 SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346
S+ GG +E + ++ LN+++ + + +W +
Sbjct: 238 SLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 98.1 bits (245), Expect = 1e-22
Identities = 33/204 (16%), Positives = 67/204 (32%), Gaps = 30/204 (14%)
Query: 105 RYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLK 164
Y+++ EW ++ N+ RS+ LY GG + +++ +
Sbjct: 128 AYNIKSNEWFHVAPMNTR--RSSVGVGVVGGLLYAVGG-YDVASRQCL---STVECYNAT 181
Query: 165 TNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224
TN+W + + RSG + + + + GG + V+D W+++
Sbjct: 182 TNEWTYI--AEMSTRRSGAGVGVLNNLLYAVGGHDGP----LVRKSVEVYDPTTNAWRQV 235
Query: 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284
M R +++ GG + + +P T +W
Sbjct: 236 AD----M-NMCRRNAGVCAVNGLLYVVGGDDGSCNLASVE-----------YYNPTTDKW 279
Query: 285 SKVKKIGMPPGPRAGFSMCVHKKR 308
+ V R+ + V KR
Sbjct: 280 TVVSS--CMSTGRSYAGVTVIDKR 301
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 1e-20
Identities = 41/238 (17%), Positives = 76/238 (31%), Gaps = 37/238 (15%)
Query: 78 PLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYL 137
P+ +L++ G V YD +++ W ++ P R V +
Sbjct: 11 PMNLPKLMVVVGGQAPKAIRSVE----CYDFKEERWHQVAEL--PSRRCRAGMVYMAGLV 64
Query: 138 YIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSPRSGHRMVLYKHKIIVFG 196
+ GG S + D +QW + N+ RS + + G
Sbjct: 65 FAVGGFNGS------LRVRTVDSYDPVKDQWTSVANM---RDRRSTLGAAVLNGLLYAVG 115
Query: 197 GFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSK 256
GF + + + +++ +W + P M + RS V ++ GGY
Sbjct: 116 GFDGS----TGLSSVEAYNIKSNEWFHVAP----M-NTRRSSVGVGVVGGLLYAVGGYD- 165
Query: 257 EVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
S + + T EW+ + + M R+G + V GG
Sbjct: 166 --------VASRQCLSTVECYNATTNEWTYIAE--MST-RRSGAGVGVLNNLLYAVGG 212
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 1e-19
Identities = 45/255 (17%), Positives = 82/255 (32%), Gaps = 46/255 (18%)
Query: 64 PAPSPRSN---CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN 120
PS R + + GG +NG+ + YD K +W +++
Sbjct: 47 ELPSRRCRAGMVYMA------GLVFAVGG--FNGSLRV--RTVDSYDPVKDQWTSVANMR 96
Query: 121 SPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSP 179
RS A LY GG + ++K+N+W + + +
Sbjct: 97 DR--RSTLGAAVLNGLLYAVGG------FDGSTGLSSVEAYNIKSNEWFHVAPM---NTR 145
Query: 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGF 239
RS + + + GG+ R+ + + ++ +W I M + RSG
Sbjct: 146 RSSVGVGVVGGLLYAVGGYDVASRQ--CLSTVECYNATTNEWTYIAE----M-STRRSGA 198
Query: 240 QFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299
V + ++ GG+ + + DP T W +V M R
Sbjct: 199 GVGVLNNLLYAVGGHDGPLV-----------RKSVEVYDPTTNAWRQVAD--MN-MCRRN 244
Query: 300 FSMCVHKKRALLFGG 314
+C + GG
Sbjct: 245 AGVCAVNGLLYVVGG 259
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 1e-14
Identities = 31/192 (16%), Positives = 56/192 (29%), Gaps = 32/192 (16%)
Query: 123 PPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSG 182
++ + + GG+ + D K +W Q + PS R
Sbjct: 4 VRTRLRTPMNLPKLMVVVGGQAPKA-------IRSVECYDFKEERWHQ--VAELPSRRCR 54
Query: 183 HRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFF 242
MV + GGF + + +D + +W + M RS
Sbjct: 55 AGMVYMAGLVFAVGGFNGS----LRVRTVDSYDPVKDQWTSVAN----M-RDRRSTLGAA 105
Query: 243 VYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSM 302
V ++ GG+ S + + + ++ EW V M R+ +
Sbjct: 106 VLNGLLYAVGGFDGSTG-----------LSSVEAYNIKSNEWFHVAP--M-NTRRSSVGV 151
Query: 303 CVHKKRALLFGG 314
V GG
Sbjct: 152 GVVGGLLYAVGG 163
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 4e-09
Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 23/137 (16%)
Query: 178 SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237
S R+ R + K++V G + + +D + +W ++ + PS R
Sbjct: 3 SVRTRLRTPMNLPKLMVVVGGQAP----KAIRSVECYDFKEERWHQVAE----L-PSRRC 53
Query: 238 GFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPR 297
VF GG++ + + S DP +W+ V M R
Sbjct: 54 RAGMVYMAGLVFAVGGFNGSLRVR-----------TVDSYDPVKDQWTSVA--NM-RDRR 99
Query: 298 AGFSMCVHKKRALLFGG 314
+ V GG
Sbjct: 100 STLGAAVLNGLLYAVGG 116
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 4e-06
Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 9/89 (10%)
Query: 104 YRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDL 163
YD W+ ++ N R + LY+ GG+ S N +Y +
Sbjct: 223 EVYDPTTNAWRQVADMNM--CRRNAGVCAVNGLLYVVGGDDGSCNLASVEYY------NP 274
Query: 164 KTNQWEQLNLKGCPSPRSGHRMVLYKHKI 192
T++W ++ + RS + + ++
Sbjct: 275 TTDKWTVVS-SCMSTGRSYAGVTVIDKRL 302
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 1e-22
Identities = 45/252 (17%), Positives = 81/252 (32%), Gaps = 40/252 (15%)
Query: 64 PAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPP 123
PR + + + LI G ++ + +Y+ Y+ W ++
Sbjct: 11 SGLVPRGSHAPKVG-----RLIYTAGGYFRQSLSYLE----AYNPSNGTWLRLADL--QV 59
Query: 124 PRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSPRSG 182
PRS LY GG SP+ + TNQW + PR+
Sbjct: 60 PRSGLAGCVVGGLLYAVGGRNNSPDGNT--DSSALDCYNPMTNQWSPCAPM---SVPRNR 114
Query: 183 HRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFF 242
+ + I GG + ++N + ++ ++ +W + P M + R G
Sbjct: 115 IGVGVIDGHIYAVGGSHGC----IHHNSVERYEPERDEWHLVAP----M-LTRRIGVGVA 165
Query: 243 VYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSM 302
V ++ GG+ + + P EW + M R+G +
Sbjct: 166 VLNRLLYAVGGFDGTNRLNSAE-----------CYYPERNEWRMITA--MNT-IRSGAGV 211
Query: 303 CVHKKRALLFGG 314
CV GG
Sbjct: 212 CVLHNCIYAAGG 223
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 2e-22
Identities = 43/204 (21%), Positives = 74/204 (36%), Gaps = 41/204 (20%)
Query: 105 RYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQ----ERFHHYKDFWM 160
RY+ E+ EW +++ + R LY GG F N+ E +
Sbjct: 141 RYEPERDEWHLVAPMLTR--RIGVGVAVLNRLLYAVGG-FDGTNRLNSAECY-------- 189
Query: 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220
+ N+W + + RSG + + + I GG+ N + +D++
Sbjct: 190 -YPERNEWRMI--TAMNTIRSGAGVCVLHNCIYAAGGYDGQ----DQLNSVERYDVETET 242
Query: 221 WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR 280
W + P M RS V+Q +++ GGY D + DP
Sbjct: 243 WTFVAP----M-KHRRSALGITVHQGRIYVLGGYDGHTFLDSVE-----------CYDPD 286
Query: 281 TWEWSKVKKIGMPPGPRAGFSMCV 304
T WS+V ++ R+G + V
Sbjct: 287 TDTWSEVTRM---TSGRSGVGVAV 307
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 3e-20
Identities = 46/255 (18%), Positives = 82/255 (32%), Gaps = 44/255 (17%)
Query: 64 PAPSPRSN---CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN 120
PRS C + L GG + + L Y+ +W + +
Sbjct: 56 DLQVPRSGLAGCVVG------GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMS 109
Query: 121 SPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSP 179
PR+ ++Y GG H+ + + ++W + + +
Sbjct: 110 V--PRNRIGVGVIDGHIYAVGG------SHGCIHHNSVERYEPERDEWHLVAPM---LTR 158
Query: 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGF 239
R G + + + GGF N + ++ +W+ I M + RSG
Sbjct: 159 RIGVGVAVLNRLLYAVGGF----DGTNRLNSAECYYPERNEWRMITA----M-NTIRSGA 209
Query: 240 QFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299
V + ++ GGY N E+ D T W+ V M R+
Sbjct: 210 GVCVLHNCIYAAGGYDG--QDQLNSVER---------YDVETETWTFVAP--M-KHRRSA 255
Query: 300 FSMCVHKKRALLFGG 314
+ VH+ R + GG
Sbjct: 256 LGITVHQGRIYVLGG 270
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 3e-16
Identities = 36/196 (18%), Positives = 58/196 (29%), Gaps = 29/196 (14%)
Query: 119 PNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178
+ PR +H A +Y GG F + W +L
Sbjct: 10 SSGLVPRGSH-APKVGRLIYTAGGYFRQS-------LSYLEAYNPSNGTWLRL--ADLQV 59
Query: 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG 238
PRSG + + GG ++ + L ++ +W P M PR+
Sbjct: 60 PRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAP----M-SVPRNR 114
Query: 239 FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRA 298
V ++ GG + H+ + +P EW V M R
Sbjct: 115 IGVGVIDGHIYAVGGSHGCIH-----------HNSVERYEPERDEWHLVAP--M-LTRRI 160
Query: 299 GFSMCVHKKRALLFGG 314
G + V + GG
Sbjct: 161 GVGVAVLNRLLYAVGG 176
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 2e-22
Identities = 38/230 (16%), Positives = 64/230 (27%), Gaps = 36/230 (15%)
Query: 91 FYNGNKTYVYG-----DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFT 145
+ + ++G ++ + W I P R V W N +YI GG
Sbjct: 9 KKHDYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEK--RRDAACVFWDNVVYILGGSQL 66
Query: 146 SPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLRE 204
P K ++ + W P+PR + KI GG
Sbjct: 67 FP-------IKRMDCYNVVKDSWYSKLGP---PTPRDSLAACAAEGKIYTSGGSEVG--- 113
Query: 205 VRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQ 264
+D W M + R +++ GG
Sbjct: 114 NSALYLFECYDTRTESWHTKPS----M-LTQRCSHGMVEANGLIYVCGGSL-------GN 161
Query: 265 SEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
+ G + + DP T W+++ M R + K + GG
Sbjct: 162 NVSGRVLNSCEVYDPATETWTELCP--M-IEARKNHGLVFVKDKIFAVGG 208
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 1e-21
Identities = 48/230 (20%), Positives = 69/230 (30%), Gaps = 38/230 (16%)
Query: 94 GNKTYVYG--------DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFT 145
N Y+ G + Y+V K W P +P R + A + + +Y GG
Sbjct: 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP--RDSLAACAAEGKIYTSGG-SE 111
Query: 146 SPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLRE 204
N F D +T W ++ + R H MV I V GG
Sbjct: 112 VGN----SALYLFECYDTRTESWHTKPSM---LTQRCSHGMVEANGLIYVCGGSLGNNVS 164
Query: 205 VRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQ 264
R N V+D W E+ P M R +D++F GG + D +
Sbjct: 165 GRVLNSCEVYDPATETWTELCP----M-IEARKNHGLVFVKDKIFAVGGQNGLGGLDNVE 219
Query: 265 SEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
D + EW V M P + G
Sbjct: 220 -----------YYDIKLNEWKMVSP--M-PWKGVTVKCAAVGSIVYVLAG 255
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 7e-21
Identities = 36/200 (18%), Positives = 62/200 (31%), Gaps = 28/200 (14%)
Query: 105 RYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLK 164
YD + W S + R +H V +Y+ GG + R + D
Sbjct: 122 CYDTRTESWHTKPSMLTQ--RCSHGMVEANGLIYVCGGSLGNNVSGR--VLNSCEVYDPA 177
Query: 165 TNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224
T W +L R H +V K KI GG +++ +D+ +W+ +
Sbjct: 178 TETWTEL--CPMIEARKNHGLVFVKDKIFAVGGQNGL----GGLDNVEYYDIKLNEWKMV 231
Query: 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284
P M P + V++ G+ + + T +W
Sbjct: 232 SP----M-PWKGVTVKCAAVGSIVYVLAGFQGVGRLG-----------HILEYNTETDKW 275
Query: 285 SKVKKIGMPPGPRAGFSMCV 304
K + P +CV
Sbjct: 276 VANSK--VRAFPVTSCLICV 293
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 3e-12
Identities = 26/156 (16%), Positives = 48/156 (30%), Gaps = 22/156 (14%)
Query: 86 LY--GGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGE 143
+Y GG N V YD + W + R H V K+ ++ GG+
Sbjct: 152 IYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEA--RKNHGLVFVKDKIFAVGGQ 209
Query: 144 FTSPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSPRSGHRMVLYKHKIIVFGGFYDTL 202
+ D+K N+W+ + + P + + V GF
Sbjct: 210 NGL------GGLDNVEYYDIKLNEWKMVSPM---PWKGVTVKCAAVGSIVYVLAGF---- 256
Query: 203 REVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG 238
+ V + ++ + KW + P +
Sbjct: 257 QGVGRLGHILEYNTETDKWVAN----SKVRAFPVTS 288
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 7e-08
Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 28/137 (20%)
Query: 178 SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237
S + R + ++I +FGG + RY+ + + W +I+ R
Sbjct: 1 SMGTRPRRKKHDYRIALFGG--SQPQSCRYF------NPKDYSWTDIRC----P-FEKRR 47
Query: 238 GFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPR 297
+ + V++ GG + + W G P PR
Sbjct: 48 DAACVFWDNVVYILGGSQ------------LFPIKRMDCYNVVKDSWYSKL--GP-PTPR 92
Query: 298 AGFSMCVHKKRALLFGG 314
+ C + + GG
Sbjct: 93 DSLAACAAEGKIYTSGG 109
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 3e-21
Identities = 39/200 (19%), Positives = 61/200 (30%), Gaps = 33/200 (16%)
Query: 105 RYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLK 164
RYD +W ++ + R V +Y GG + N D
Sbjct: 132 RYDPNIDQWSMLGDMQTA--REGAGLVVASGVIYCLGG-YDGLN-----ILNSVEKYDPH 183
Query: 165 TNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224
T W + + RSG + L I V GGF T + + + +++ W +
Sbjct: 184 TGHWTNV--TPMATKRSGAGVALLNDHIYVVGGFDGT----AHLSSVEAYNIRTDSWTTV 237
Query: 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284
SM +PR V + ++ GY + DP W
Sbjct: 238 ----TSM-TTPRCYVGATVLRGRLYAIAGYDGNSLLS-----------SIECYDPIIDSW 281
Query: 285 SKVKKIGMPPGPRAGFSMCV 304
V M R +CV
Sbjct: 282 EVVTS--M-GTQRCDAGVCV 298
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 1e-18
Identities = 48/253 (18%), Positives = 85/253 (33%), Gaps = 45/253 (17%)
Query: 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPR 125
PR+ L N + L++ GG + ++ + + +YD + QEW + S R
Sbjct: 3 QGPRTRARLGANEV----LLVVGG--FGSQQSPI-DVVEKYDPKTQEWSFLPSITRK--R 53
Query: 126 SAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ---WEQL-NLKGCPSPRS 181
+VS + +Y+ GG LD ++ W + + R
Sbjct: 54 RYVASVSLHDRIYVIGGYDGR------SRLSSVECLDYTADEDGVWYSVAPM---NVRRG 104
Query: 182 GHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQF 241
I V GGF + R + + +D + +W + M + R G
Sbjct: 105 LAGATTLGDMIYVSGGFDGS----RRHTSMERYDPNIDQWSMLGD----M-QTAREGAGL 155
Query: 242 FVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFS 301
V ++ GGY + + DP T W+ V M R+G
Sbjct: 156 VVASGVIYCLGGYDGLNILNSVE-----------KYDPHTGHWTNVTP--MAT-KRSGAG 201
Query: 302 MCVHKKRALLFGG 314
+ + + GG
Sbjct: 202 VALLNDHIYVVGG 214
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 7e-17
Identities = 45/231 (19%), Positives = 76/231 (32%), Gaps = 42/231 (18%)
Query: 88 GGEFYNGNKTYVYGDLYRYDVEKQE---WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEF 144
GG Y+G + D E W ++ N R A + + +Y+ GG
Sbjct: 69 GG--YDGRSRL--SSVECLDYTADEDGVWYSVAPMNVR--RGLAGATTLGDMIYVSGG-- 120
Query: 145 TSPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLR 203
+ + D +QW L ++ + R G +V+ I GG+
Sbjct: 121 ----FDGSRRHTSMERYDPNIDQWSMLGDM---QTAREGAGLVVASGVIYCLGGY----D 169
Query: 204 EVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKN 263
+ N + +D W + P M + RSG + D +++ GG+ +
Sbjct: 170 GLNILNSVEKYDPHTGHWTNVTP----M-ATKRSGAGVALLNDHIYVVGGFDGTAHL--S 222
Query: 264 QSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
E + RT W+ V M PR V + R G
Sbjct: 223 SVEA---------YNIRTDSWTTVTS--MT-TPRCYVGATVLRGRLYAIAG 261
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 4e-05
Identities = 65/488 (13%), Positives = 146/488 (29%), Gaps = 123/488 (25%)
Query: 38 DDIDAI-LLSIQKEEAKKKEVHVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNK 96
D+ D + + K K+E+ + + + + + T + +
Sbjct: 31 DNFDCKDVQDMPKSILSKEEI--DHIIMSK----------DAVSGTLRLFWTLLSKQEEM 78
Query: 97 TYVY-GDLYRYDVEKQEWKV--ISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFH 153
+ ++ R + + + + I + P + ++ LY F N R
Sbjct: 79 VQKFVEEVLRINYK---FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 154 HYKDF--WMLDLKTNQWEQLN-LKGCPSPRSGH----RMVLYKHKIIV---FGGFYDTLR 203
Y +L+L+ + ++ + G G V +K+ F F+ L+
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGS-----GKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 204 EVRYYNDLYVFDLDQFKWQEIKPRF---GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVST 260
+ ++ Q +I P + + + + L
Sbjct: 191 NCNSPETV--LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL---------K 239
Query: 261 DKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSM-CVHKKRALL---FGGVV 316
K ++ ++ + + W F++ C + LL F V
Sbjct: 240 SKPYENCLLVLLNVQ--NAKAWN---------------AFNLSC----KILLTTRFKQVT 278
Query: 317 DMEMKGDVIMSLFLNELYGFQLD-NHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHE-- 373
D FL+ + +H L K L K + +P E
Sbjct: 279 D-----------FLSAATTTHISLDHHSMTLT---PDEVKSLLLKYLDCRPQDLP-REVL 323
Query: 374 KLNPIEAEEFDANEKDENA--EYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKP 431
NP + +D A + ++ N D L+ + +S+ VL +P
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKH-----VNCDKLTTIIESSL----NVL------EP 368
Query: 432 YESKKK-SDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNL 490
E +K + S+ P + L + + +D + ++ L+ +L
Sbjct: 369 AEYRKMFDRL--SVFPPSAH----------IPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 491 SKLDEWKC 498
+++
Sbjct: 417 --VEKQPK 422
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 9e-05
Identities = 83/603 (13%), Positives = 162/603 (26%), Gaps = 206/603 (34%)
Query: 27 ARRETKKISPEDDIDA-------ILLSIQKEEAKK--------------KEVHVEDNVPA 65
++ E I D + LLS Q+E +K + E P+
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPR 125
+ I YN N+ + ++ R + K+ R
Sbjct: 107 -------------MMTRMYIEQRDRLYNDNQVFAKYNVSR---LQPYLKL---------R 141
Query: 126 SAHQAVSWKNYLYIFG----GEFT-------SPNQERFHHYKDFWM-----------LDL 163
A + + I G G+ S + +K FW+ L++
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 164 KTNQWEQLNLKGCPSPRSGHRMVL-----------------YKHKIIVFGGFYDTLREVR 206
Q++ + L Y++ ++V L V+
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-------LLNVQ 254
Query: 207 YYNDLYVFDL--------------DQFKWQEIKPRFGSMWPSPRSGFQFFVYQDE---VF 249
F+L D DE +
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH---HSMTL----TPDEVKSLL 307
Query: 250 LYGGYSKEVSTDKNQ--SEKGIIHSDLWSL-------DPRTWE-WSKV------KKIGM- 292
K + E + S+ TW+ W V I
Sbjct: 308 -----LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 293 -----PPGPRAGFSMC------VHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341
P R F H LL ++ ++ +M + +N+L+ + L
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILL--SLIWFDVIKSDVM-VVVNKLHKYSL--- 416
Query: 342 RWYPLELRKEKSTK---DKLKKSSEQKPNSSALHEKLNPIEA----EEFDANEK-----D 389
+E + ++ST + + N ALH + ++ + FD+++ D
Sbjct: 417 ----VEKQPKESTISIPSIYLELKVKLENEYALHRSI--VDHYNIPKTFDSDDLIPPYLD 470
Query: 390 -----------ENAEYYEEADE----------MESNI--DNLSECVPNSVIVDDGVLAAK 426
+N E+ E +E I D+ + S++ L
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL--- 527
Query: 427 SGGKPYES--KKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDD 484
K Y+ + L+ I+ +I ++ K T + +M + E ++
Sbjct: 528 ---KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM--AEDEAIFEE 582
Query: 485 LYS 487
+
Sbjct: 583 AHK 585
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656 | Back alignment and structure |
|---|
Score = 41.9 bits (97), Expect = 6e-04
Identities = 40/263 (15%), Positives = 75/263 (28%), Gaps = 31/263 (11%)
Query: 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPR 125
R S + + + GG + G + Y + W + + P
Sbjct: 284 QVARGYQSSAT--MSDGRVFTIGGSWSGG---VFEKNGEVYSPSSKTWTSLPNAKVNPML 338
Query: 126 SAHQAVSWK--NYLYIFGGE----FTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179
+A + ++ N+ ++FG + F + + Y D+K+ Q N P
Sbjct: 339 TADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDA 398
Query: 180 RSGHRMVL--YKHKIIVFGG-----FYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232
G+ ++ K KI+ FGG D L +
Sbjct: 399 MCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHII-TLGEPGTSPNTVFAS----NGL- 452
Query: 233 PSPRSGFQFFVYQD-EVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG 291
R+ V D F+ GG + + + + P + K
Sbjct: 453 YFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTP-----VFTPEIYVPEQDTFYKQNPNS 507
Query: 292 MPPGPRAGFSMCVHKKRALLFGG 314
+ S+ + R GG
Sbjct: 508 IVRV-YHSISLLLPDGRVFNGGG 529
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 643 | |||
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 100.0 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 100.0 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 100.0 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 100.0 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 100.0 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 100.0 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 100.0 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 100.0 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 100.0 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 100.0 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 100.0 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 100.0 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 100.0 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 100.0 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 100.0 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 100.0 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 99.97 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 99.95 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.71 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 97.69 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.67 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.64 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.49 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 97.48 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.41 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.35 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.21 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.21 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 97.12 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 97.02 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 96.94 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 96.94 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 96.92 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 96.91 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 96.84 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 96.8 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 96.76 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 96.73 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 96.67 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 96.59 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 96.57 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 96.54 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 96.52 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 96.52 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 96.52 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 96.37 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 96.36 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 96.29 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 96.27 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 96.25 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 96.24 | |
| 1qhu_A | 460 | Protein (hemopexin); beta propeller, HAEM binding | 96.21 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 96.13 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 96.13 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 96.09 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 96.08 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 96.07 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 96.06 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 95.94 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 95.81 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 95.71 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 95.69 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 95.69 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 95.69 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 95.68 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 95.63 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 95.6 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 95.58 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 95.56 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 95.55 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 95.51 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 95.39 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 95.32 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 95.3 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 95.3 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 95.29 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 95.27 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 95.25 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 95.25 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 95.24 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 95.2 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 95.2 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 95.18 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 95.17 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 95.16 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 95.15 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 95.09 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 95.08 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 95.07 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 95.03 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 95.01 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 94.94 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 94.9 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 94.89 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 94.78 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 94.74 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 94.66 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 94.62 | |
| 1qhu_A | 460 | Protein (hemopexin); beta propeller, HAEM binding | 94.61 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 94.57 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 94.56 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 94.54 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.53 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 94.51 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 94.49 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 94.47 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 94.38 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 94.37 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 94.36 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.34 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 94.34 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 94.32 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 94.21 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 94.17 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 94.16 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 94.01 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 93.97 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 93.93 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 93.92 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 93.86 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 93.85 | |
| 1pex_A | 207 | Collagenase-3, MMP-13; C-terminal hemopexin-like d | 93.81 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 93.8 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 93.76 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 93.65 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 93.64 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 93.59 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 93.53 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 93.51 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 93.48 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 93.39 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 93.36 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 93.36 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 93.35 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 93.31 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 93.3 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 93.25 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 93.24 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 93.21 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 93.17 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 93.15 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 93.14 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 93.14 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 93.1 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 93.01 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 92.98 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 92.97 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 92.95 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 92.95 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 92.75 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 92.69 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 92.55 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 92.54 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 92.53 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 92.51 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 92.43 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 92.41 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 92.37 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 92.33 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 92.25 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 92.22 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 92.21 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 92.18 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 91.93 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 91.86 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 91.73 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 91.73 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 91.71 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 91.7 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 91.66 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 91.6 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 91.6 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 91.5 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 91.47 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 91.46 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 91.4 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 91.38 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 91.37 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 91.32 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 91.17 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 91.16 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 91.13 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 91.05 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 91.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 90.99 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 90.97 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 90.96 | |
| 1itv_A | 195 | MMP9; adaptive molecular recognition, beta propell | 90.84 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 90.78 | |
| 1pex_A | 207 | Collagenase-3, MMP-13; C-terminal hemopexin-like d | 90.72 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 90.69 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 90.67 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 90.66 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 90.59 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 90.54 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 90.51 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 90.47 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 90.39 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 90.29 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 90.16 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 90.14 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 90.07 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 89.93 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 89.67 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 89.41 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 89.29 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 89.19 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 89.09 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 88.98 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 88.8 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 88.77 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 88.73 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 88.64 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 88.29 | |
| 4d9s_A | 406 | UVB-resistance protein UVR8; UV resistance, UV-B p | 88.23 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 88.19 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 88.13 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 87.1 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 86.77 | |
| 1gen_A | 218 | Gelatinase A; hydrolase, hemopexin domain, metallo | 86.58 | |
| 1itv_A | 195 | MMP9; adaptive molecular recognition, beta propell | 86.19 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 86.02 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 85.93 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 85.82 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 85.74 | |
| 3ba0_A | 365 | Macrophage metalloelastase; FULL-length MMP-12, he | 85.61 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 85.59 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 85.52 | |
| 3c7x_A | 196 | Matrix metalloproteinase-14; membrane protein inte | 85.19 | |
| 4d9s_A | 406 | UVB-resistance protein UVR8; UV resistance, UV-B p | 85.15 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 84.98 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 84.29 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 84.19 | |
| 1su3_A | 450 | Interstitial collagenase; prodomain, hemopexin dom | 83.67 | |
| 3ju4_A | 670 | Endo-N-acetylneuraminidase; endonf, polysia, high- | 83.53 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 83.34 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 83.22 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 82.96 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 82.58 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 82.48 | |
| 1hxn_A | 219 | Hemopexin, HPX; heme, binding protein; 1.80A {Oryc | 82.26 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 81.63 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 81.49 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 81.24 | |
| 3c7x_A | 196 | Matrix metalloproteinase-14; membrane protein inte | 80.79 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 80.57 | |
| 3ba0_A | 365 | Macrophage metalloelastase; FULL-length MMP-12, he | 80.53 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 80.27 | |
| 1su3_A | 450 | Interstitial collagenase; prodomain, hemopexin dom | 80.01 |
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-44 Score=374.31 Aligned_cols=290 Identities=18% Similarity=0.254 Sum_probs=242.1
Q ss_pred CCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeC
Q 006473 63 VPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGG 142 (643)
Q Consensus 63 ~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG 142 (643)
.+-|.+|..|+++.+ ++.||||||. ++ ..++++++||+.+++|..++. .|.+|.+|+++++++.||||||
T Consensus 9 ~~~~~~~~~~~~~~~---~~~i~v~GG~--~~---~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~GG 78 (308)
T 1zgk_A 9 HSSGLVPRGSHAPKV---GRLIYTAGGY--FR---QSLSYLEAYNPSNGTWLRLAD--LQVPRSGLAGCVVGGLLYAVGG 78 (308)
T ss_dssp ------------CCC---CCCEEEECCB--SS---SBCCCEEEEETTTTEEEECCC--CSSCCBSCEEEEETTEEEEECC
T ss_pred ccCCeeeCCccccCC---CCEEEEEeCc--CC---CCcceEEEEcCCCCeEeECCC--CCcccccceEEEECCEEEEECC
Confidence 456788999999988 8999999996 22 367899999999999999965 5789999999999999999999
Q ss_pred ccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceE
Q 006473 143 EFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222 (643)
Q Consensus 143 ~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~ 222 (643)
....... ...++++|+||+.+++|+.+++ +|.+|.+|++++++++||||||.... ..++++++||+.+++|+
T Consensus 79 ~~~~~~~--~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~yd~~~~~W~ 150 (308)
T 1zgk_A 79 RNNSPDG--NTDSSALDCYNPMTNQWSPCAP--MSVPRNRIGVGVIDGHIYAVGGSHGC----IHHNSVERYEPERDEWH 150 (308)
T ss_dssp EEEETTE--EEECCCEEEEETTTTEEEECCC--CSSCCBTCEEEEETTEEEEECCEETT----EECCCEEEEETTTTEEE
T ss_pred CcCCCCC--CeecceEEEECCCCCeEeECCC--CCcCccccEEEEECCEEEEEcCCCCC----cccccEEEECCCCCeEe
Confidence 7421111 2357999999999999999987 89999999999999999999998753 36899999999999999
Q ss_pred EeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEE
Q 006473 223 EIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSM 302 (643)
Q Consensus 223 ~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~ 302 (643)
.++++ |.+|.+|++++++++|||+||+... ..++++++||+.+++|+.+.. +|.+|.+|++
T Consensus 151 ~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~ 211 (308)
T 1zgk_A 151 LVAPM-----LTRRIGVGVAVLNRLLYAVGGFDGT-----------NRLNSAECYYPERNEWRMITA---MNTIRSGAGV 211 (308)
T ss_dssp ECCCC-----SSCCBSCEEEEETTEEEEECCBCSS-----------CBCCCEEEEETTTTEEEECCC---CSSCCBSCEE
T ss_pred ECCCC-----CccccceEEEEECCEEEEEeCCCCC-----------CcCceEEEEeCCCCeEeeCCC---CCCccccceE
Confidence 99877 8899999999999999999998765 347899999999999999975 4789999999
Q ss_pred EEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhh
Q 006473 303 CVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEE 382 (643)
Q Consensus 303 ~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (643)
++++++||||||... ...++++++||+.+++|..+..
T Consensus 212 ~~~~~~iyv~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~---------------------------------- 248 (308)
T 1zgk_A 212 CVLHNCIYAAGGYDG---------QDQLNSVERYDVETETWTFVAP---------------------------------- 248 (308)
T ss_dssp EEETTEEEEECCBCS---------SSBCCCEEEEETTTTEEEECCC----------------------------------
T ss_pred EEECCEEEEEeCCCC---------CCccceEEEEeCCCCcEEECCC----------------------------------
Confidence 999999999999864 2347999999999999998764
Q ss_pred cccCcccchhhhhhhhhhcccccccccccCCcceeecCceeeeecCCCCCCccccccccccCCCCCcCCccccccceeee
Q 006473 383 FDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVG 462 (643)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~ 462 (643)
+|.+|+++++++.
T Consensus 249 -------------------------------------------------------------------~p~~r~~~~~~~~ 261 (308)
T 1zgk_A 249 -------------------------------------------------------------------MKHRRSALGITVH 261 (308)
T ss_dssp -------------------------------------------------------------------CSSCCBSCEEEEE
T ss_pred -------------------------------------------------------------------CCCCccceEEEEE
Confidence 6999999999999
Q ss_pred cCeEEEecceEeecCeEEeecceeccccCCccceEEeccCCc
Q 006473 463 KDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIPASE 504 (643)
Q Consensus 463 ~~~Lyi~GG~~e~g~~e~tl~D~~~ldl~k~d~w~~i~~~~~ 504 (643)
++.|||+||... ...++++|.||+.+ +.|+.+-+.+.
T Consensus 262 ~~~i~v~GG~~~----~~~~~~v~~yd~~~-~~W~~~~~~p~ 298 (308)
T 1zgk_A 262 QGRIYVLGGYDG----HTFLDSVECYDPDT-DTWSEVTRMTS 298 (308)
T ss_dssp TTEEEEECCBCS----SCBCCEEEEEETTT-TEEEEEEECSS
T ss_pred CCEEEEEcCcCC----CcccceEEEEcCCC-CEEeecCCCCC
Confidence 999999999742 23589999999999 99999966543
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-42 Score=359.28 Aligned_cols=269 Identities=18% Similarity=0.289 Sum_probs=236.3
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~ 160 (643)
++.||||||.. . ..++++++||+.+++|..++. .|.+|.+|+++++++.||||||.... ..++++|+
T Consensus 15 ~~~i~v~GG~~--~---~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~GG~~~~------~~~~~~~~ 81 (302)
T 2xn4_A 15 PKLMVVVGGQA--P---KAIRSVECYDFKEERWHQVAE--LPSRRCRAGMVYMAGLVFAVGGFNGS------LRVRTVDS 81 (302)
T ss_dssp CEEEEEECCBS--S---SBCCCEEEEETTTTEEEEECC--CSSCCBSCEEEEETTEEEEESCBCSS------SBCCCEEE
T ss_pred CCEEEEECCCC--C---CCCCcEEEEcCcCCcEeEccc--CCcccccceEEEECCEEEEEeCcCCC------ccccceEE
Confidence 68999999952 2 257899999999999999965 57899999999999999999998643 24689999
Q ss_pred EECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCcccee
Q 006473 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240 (643)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s 240 (643)
||+.+++|+.+++ +|.+|.+|++++++++||||||.... ..++++++||+.+++|+.++++ |.+|.+|+
T Consensus 82 ~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~~d~~~~~W~~~~~~-----p~~r~~~~ 150 (302)
T 2xn4_A 82 YDPVKDQWTSVAN--MRDRRSTLGAAVLNGLLYAVGGFDGS----TGLSSVEAYNIKSNEWFHVAPM-----NTRRSSVG 150 (302)
T ss_dssp EETTTTEEEEECC--CSSCCBSCEEEEETTEEEEEEEECSS----CEEEEEEEEETTTTEEEEECCC-----SSCCBSCE
T ss_pred ECCCCCceeeCCC--CCccccceEEEEECCEEEEEcCCCCC----ccCceEEEEeCCCCeEeecCCC-----CCcccCce
Confidence 9999999999987 89999999999999999999998653 3589999999999999999877 88999999
Q ss_pred EEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEecccccccc
Q 006473 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEM 320 (643)
Q Consensus 241 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~ 320 (643)
+++++++|||+||+... ....++++++||+.+++|+.+.. .|.+|.+|++++++++||||||...
T Consensus 151 ~~~~~~~iyv~GG~~~~---------~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~--- 215 (302)
T 2xn4_A 151 VGVVGGLLYAVGGYDVA---------SRQCLSTVECYNATTNEWTYIAE---MSTRRSGAGVGVLNNLLYAVGGHDG--- 215 (302)
T ss_dssp EEEETTEEEEECCEETT---------TTEECCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEECCBSS---
T ss_pred EEEECCEEEEEeCCCCC---------CCccccEEEEEeCCCCcEEECCC---CccccccccEEEECCEEEEECCCCC---
Confidence 99999999999998754 12467899999999999999965 4789999999999999999999864
Q ss_pred CccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhh
Q 006473 321 KGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADE 400 (643)
Q Consensus 321 ~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (643)
..+.+++++||+.+++|..+..
T Consensus 216 ------~~~~~~~~~yd~~~~~W~~~~~---------------------------------------------------- 237 (302)
T 2xn4_A 216 ------PLVRKSVEVYDPTTNAWRQVAD---------------------------------------------------- 237 (302)
T ss_dssp ------SSBCCCEEEEETTTTEEEEECC----------------------------------------------------
T ss_pred ------CcccceEEEEeCCCCCEeeCCC----------------------------------------------------
Confidence 2457899999999999998764
Q ss_pred cccccccccccCCcceeecCceeeeecCCCCCCccccccccccCCCCCcCCccccccceeeecCeEEEecceEeecCeEE
Q 006473 401 MESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEI 480 (643)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~ 480 (643)
+|.+|.+|++++.++.|||+||.... .
T Consensus 238 -------------------------------------------------~~~~r~~~~~~~~~~~i~v~GG~~~~----~ 264 (302)
T 2xn4_A 238 -------------------------------------------------MNMCRRNAGVCAVNGLLYVVGGDDGS----C 264 (302)
T ss_dssp -------------------------------------------------CSSCCBSCEEEEETTEEEEECCBCSS----S
T ss_pred -------------------------------------------------CCCccccCeEEEECCEEEEECCcCCC----c
Confidence 68999999999999999999997422 2
Q ss_pred eecceeccccCCccceEEec
Q 006473 481 TLDDLYSLNLSKLDEWKCII 500 (643)
Q Consensus 481 tl~D~~~ldl~k~d~w~~i~ 500 (643)
.++++|.||+.+ +.|+.+.
T Consensus 265 ~~~~v~~yd~~~-~~W~~~~ 283 (302)
T 2xn4_A 265 NLASVEYYNPTT-DKWTVVS 283 (302)
T ss_dssp BCCCEEEEETTT-TEEEECS
T ss_pred ccccEEEEcCCC-CeEEECC
Confidence 489999999999 9999986
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-42 Score=360.37 Aligned_cols=272 Identities=17% Similarity=0.226 Sum_probs=237.0
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~ 160 (643)
.+.||+|||.. . .+++++||+.+++|..++. .|.+|.+|+++++++.||||||.. . ..++++|+
T Consensus 11 ~~~l~~~GG~~--~-----~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~GG~~-~------~~~~~~~~ 74 (306)
T 3ii7_A 11 HDYRIALFGGS--Q-----PQSCRYFNPKDYSWTDIRC--PFEKRRDAACVFWDNVVYILGGSQ-L------FPIKRMDC 74 (306)
T ss_dssp CCEEEEEECCS--S-----TTSEEEEETTTTEEEECCC--CSCCCBSCEEEEETTEEEEECCBS-S------SBCCEEEE
T ss_pred cceEEEEeCCC--C-----CceEEEecCCCCCEecCCC--CCcccceeEEEEECCEEEEEeCCC-C------CCcceEEE
Confidence 47899999942 1 6899999999999999975 478999999999999999999986 1 25799999
Q ss_pred EECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCcccee
Q 006473 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240 (643)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s 240 (643)
||+.+++|+.+++ +|.+|.+|++++++++||||||.... ...++++++||+.+++|+.++++ |.+|.+|+
T Consensus 75 ~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~~d~~~~~W~~~~~~-----p~~r~~~~ 144 (306)
T 3ii7_A 75 YNVVKDSWYSKLG--PPTPRDSLAACAAEGKIYTSGGSEVG---NSALYLFECYDTRTESWHTKPSM-----LTQRCSHG 144 (306)
T ss_dssp EETTTTEEEEEEC--CSSCCBSCEEEEETTEEEEECCBBTT---BSCCCCEEEEETTTTEEEEECCC-----SSCCBSCE
T ss_pred EeCCCCeEEECCC--CCccccceeEEEECCEEEEECCCCCC---CcEeeeEEEEeCCCCceEeCCCC-----cCCcceeE
Confidence 9999999999977 89999999999999999999998632 33689999999999999999877 88999999
Q ss_pred EEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEecccccccc
Q 006473 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEM 320 (643)
Q Consensus 241 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~ 320 (643)
++.++++|||+||.... ...+..++++++||+.+++|+.+.. .|.+|.+|++++++++||||||...
T Consensus 145 ~~~~~~~iyv~GG~~~~-------~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~--- 211 (306)
T 3ii7_A 145 MVEANGLIYVCGGSLGN-------NVSGRVLNSCEVYDPATETWTELCP---MIEARKNHGLVFVKDKIFAVGGQNG--- 211 (306)
T ss_dssp EEEETTEEEEECCEESC-------TTTCEECCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEECCEET---
T ss_pred EEEECCEEEEECCCCCC-------CCcccccceEEEeCCCCCeEEECCC---ccchhhcceEEEECCEEEEEeCCCC---
Confidence 99999999999998754 1112458999999999999999975 4789999999999999999999865
Q ss_pred CccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhh
Q 006473 321 KGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADE 400 (643)
Q Consensus 321 ~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (643)
...++++++||+.+++|..+..
T Consensus 212 ------~~~~~~~~~yd~~~~~W~~~~~---------------------------------------------------- 233 (306)
T 3ii7_A 212 ------LGGLDNVEYYDIKLNEWKMVSP---------------------------------------------------- 233 (306)
T ss_dssp ------TEEBCCEEEEETTTTEEEECCC----------------------------------------------------
T ss_pred ------CCCCceEEEeeCCCCcEEECCC----------------------------------------------------
Confidence 2347899999999999998754
Q ss_pred cccccccccccCCcceeecCceeeeecCCCCCCccccccccccCCCCCcCCccccccceeeecCeEEEecceEeecCeEE
Q 006473 401 MESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEI 480 (643)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~ 480 (643)
+|.+|..+++++.++.|||+||.... .
T Consensus 234 -------------------------------------------------~p~~r~~~~~~~~~~~i~v~GG~~~~----~ 260 (306)
T 3ii7_A 234 -------------------------------------------------MPWKGVTVKCAAVGSIVYVLAGFQGV----G 260 (306)
T ss_dssp -------------------------------------------------CSCCBSCCEEEEETTEEEEEECBCSS----S
T ss_pred -------------------------------------------------CCCCccceeEEEECCEEEEEeCcCCC----e
Confidence 69999999999999999999998532 2
Q ss_pred eecceeccccCCccceEEeccCC
Q 006473 481 TLDDLYSLNLSKLDEWKCIIPAS 503 (643)
Q Consensus 481 tl~D~~~ldl~k~d~w~~i~~~~ 503 (643)
.++++|.||+.+ +.|+.+.+.+
T Consensus 261 ~~~~~~~yd~~~-~~W~~~~~~~ 282 (306)
T 3ii7_A 261 RLGHILEYNTET-DKWVANSKVR 282 (306)
T ss_dssp BCCEEEEEETTT-TEEEEEEEEE
T ss_pred eeeeEEEEcCCC-CeEEeCCCcc
Confidence 588999999999 9999986544
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-42 Score=369.17 Aligned_cols=306 Identities=19% Similarity=0.251 Sum_probs=240.0
Q ss_pred ccCCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECC--CCcEEEecCCCCC-CCceeeEEEEECCEE
Q 006473 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVE--KQEWKVISSPNSP-PPRSAHQAVSWKNYL 137 (643)
Q Consensus 61 ~~~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~--~~~W~~l~s~~~P-~pRs~ha~~~~~~~i 137 (643)
..+++|.+|.+|+++++ +++||||||.. .+++|+||+. +++|+.+++ .| .+|++|++++++++|
T Consensus 2 ~l~~lP~~r~~~~~~~~---~~~iyv~GG~~--------~~~~~~~d~~~~~~~W~~~~~--~p~~~R~~~~~~~~~~~l 68 (357)
T 2uvk_A 2 VLPETPVPFKSGTGAID---NDTVYIGLGSA--------GTAWYKLDTQAKDKKWTALAA--FPGGPRDQATSAFIDGNL 68 (357)
T ss_dssp CSCCCSSCCCSCEEEEE---TTEEEEECGGG--------TTCEEEEETTSSSCCEEECCC--CTTCCCBSCEEEEETTEE
T ss_pred CCCCCCccccceEEEEE---CCEEEEEeCcC--------CCeEEEEccccCCCCeeECCC--CCCCcCccceEEEECCEE
Confidence 45678999999999998 89999999952 2489999998 499999976 46 789999999999999
Q ss_pred EEEeCccC-CCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCC-------------
Q 006473 138 YIFGGEFT-SPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLR------------- 203 (643)
Q Consensus 138 yvfGG~~~-~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~------------- 203 (643)
|||||... ... ....++++|+||+.+++|+.+.+.+ |.+|.+|++++++++||||||......
T Consensus 69 yv~GG~~~~~~~--~~~~~~~v~~yd~~~~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~ 145 (357)
T 2uvk_A 69 YVFGGIGKNSEG--LTQVFNDVHKYNPKTNSWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKD 145 (357)
T ss_dssp EEECCEEECTTS--CEEECCCEEEEETTTTEEEECSCCC-SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTC
T ss_pred EEEcCCCCCCCc--cceeeccEEEEeCCCCcEEECCCCC-CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCc
Confidence 99999822 111 1346899999999999999998833 599999999999999999999753210
Q ss_pred -----------------ceeeeccEEEEEcCCCceEEeccCCCCCCCCC-ccceeEEEeCCEEEEEcCCCCCCCCccCCC
Q 006473 204 -----------------EVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSP-RSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265 (643)
Q Consensus 204 -----------------~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~-R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~ 265 (643)
...+++++++||+.+++|+.+.++ |.+ |.+|++++++++|||+||....
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~-----p~~~~~~~~~~~~~~~iyv~GG~~~~-------- 212 (357)
T 2uvk_A 146 STAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGES-----PWYGTAGAAVVNKGDKTWLINGEAKP-------- 212 (357)
T ss_dssp HHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEEC-----SSCCCBSCEEEEETTEEEEECCEEET--------
T ss_pred ccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCC-----CCCCcccccEEEECCEEEEEeeecCC--------
Confidence 012468999999999999999877 554 5559999999999999998654
Q ss_pred CCCceeeeEEEEeC--CCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCcc--------ccccccCCcEEE
Q 006473 266 EKGIIHSDLWSLDP--RTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGD--------VIMSLFLNELYG 335 (643)
Q Consensus 266 ~~~~~~~dv~~yd~--~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~--------~~~~~~~ndl~~ 335 (643)
+...+++|+||+ .+++|+.+..+ ..|.+|.+|++++++++||||||......... ......++++++
T Consensus 213 --~~~~~~v~~~d~d~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 289 (357)
T 2uvk_A 213 --GLRTDAVFELDFTGNNLKWNKLAPV-SSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDI 289 (357)
T ss_dssp --TEECCCEEEEECC---CEEEECCCS-STTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEE
T ss_pred --CcccCceEEEEecCCCCcEEecCCC-CCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEE
Confidence 356788999986 99999999875 23556788999999999999999864211000 000123478999
Q ss_pred EECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcc
Q 006473 336 FQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNS 415 (643)
Q Consensus 336 yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (643)
||+.+++|..+..
T Consensus 290 yd~~~~~W~~~~~------------------------------------------------------------------- 302 (357)
T 2uvk_A 290 HLWHNGKWDKSGE------------------------------------------------------------------- 302 (357)
T ss_dssp EECC---CEEEEE-------------------------------------------------------------------
T ss_pred EecCCCceeeCCC-------------------------------------------------------------------
Confidence 9999999999865
Q ss_pred eeecCceeeeecCCCCCCccccccccccCCCCCcCCccccccceeeecCeEEEecceEeecCeEEeecceeccccCCccc
Q 006473 416 VIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDE 495 (643)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~tl~D~~~ldl~k~d~ 495 (643)
+|.+|++|++++.++.||||||....+ ..++|+|.|++.. +.
T Consensus 303 ----------------------------------~p~~r~~~~~~~~~~~i~v~GG~~~~~---~~~~~v~~l~~~~-~~ 344 (357)
T 2uvk_A 303 ----------------------------------LSQGRAYGVSLPWNNSLLIIGGETAGG---KAVTDSVLITVKD-NK 344 (357)
T ss_dssp ----------------------------------CSSCCBSSEEEEETTEEEEEEEECGGG---CEEEEEEEEEC-C-CS
T ss_pred ----------------------------------CCCCcccceeEEeCCEEEEEeeeCCCC---CEeeeEEEEEEcC-cE
Confidence 699999999999999999999987544 3489999999998 89
Q ss_pred eEEeccCC
Q 006473 496 WKCIIPAS 503 (643)
Q Consensus 496 w~~i~~~~ 503 (643)
|.++.+..
T Consensus 345 ~~~~~~~~ 352 (357)
T 2uvk_A 345 VTVQNLEH 352 (357)
T ss_dssp CEEEC---
T ss_pred eEeeeccc
Confidence 99887654
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-42 Score=362.05 Aligned_cols=278 Identities=22% Similarity=0.392 Sum_probs=235.4
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~ 160 (643)
.+.||+||| +++++||+.+++|.. +.++.|.+|.+|+++++++.||||||.............+++|+
T Consensus 4 ~~~l~~~GG-----------~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 71 (315)
T 4asc_A 4 QDLIFMISE-----------EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQ 71 (315)
T ss_dssp EEEEEEEET-----------TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEE
T ss_pred ceEEEEEcC-----------CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEE
Confidence 468999999 489999999999997 44545789999999999999999999743211111234677999
Q ss_pred EECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCcccee
Q 006473 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240 (643)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s 240 (643)
||+.+++|+.+++ +|.+|.+|++++++++||||||..... ....++++++||+.+++|+.++++ |.+|++|+
T Consensus 72 ~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~~~~d~~~~~W~~~~~~-----p~~r~~~~ 143 (315)
T 4asc_A 72 FDHLDSEWLGMPP--LPSPRCLFGLGEALNSIYVVGGREIKD-GERCLDSVMCYDRLSFKWGESDPL-----PYVVYGHT 143 (315)
T ss_dssp EETTTTEEEECCC--BSSCEESCEEEEETTEEEEECCEESST-TCCBCCCEEEEETTTTEEEECCCC-----SSCCBSCE
T ss_pred ecCCCCeEEECCC--CCcchhceeEEEECCEEEEEeCCcCCC-CCcccceEEEECCCCCcEeECCCC-----CCccccee
Confidence 9999999999977 899999999999999999999986321 134689999999999999999877 88999999
Q ss_pred EEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEecccccccc
Q 006473 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEM 320 (643)
Q Consensus 241 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~ 320 (643)
++.++++|||+||+... ...++++++||+.+++|+.+..+ |.+|.+|++++++++||||||...
T Consensus 144 ~~~~~~~iyv~GG~~~~----------~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~--- 207 (315)
T 4asc_A 144 VLSHMDLVYVIGGKGSD----------RKCLNKMCVYDPKKFEWKELAPM---QTARSLFGATVHDGRIIVAAGVTD--- 207 (315)
T ss_dssp EEEETTEEEEECCBCTT----------SCBCCCEEEEETTTTEEEECCCC---SSCCBSCEEEEETTEEEEEEEECS---
T ss_pred EEEECCEEEEEeCCCCC----------CcccceEEEEeCCCCeEEECCCC---CCchhceEEEEECCEEEEEeccCC---
Confidence 99999999999998433 35788999999999999999754 789999999999999999999865
Q ss_pred CccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhh
Q 006473 321 KGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADE 400 (643)
Q Consensus 321 ~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (643)
....+++++||+.+++|..++.
T Consensus 208 ------~~~~~~~~~yd~~~~~W~~~~~---------------------------------------------------- 229 (315)
T 4asc_A 208 ------TGLTSSAEVYSITDNKWAPFEA---------------------------------------------------- 229 (315)
T ss_dssp ------SSEEEEEEEEETTTTEEEEECC----------------------------------------------------
T ss_pred ------CCccceEEEEECCCCeEEECCC----------------------------------------------------
Confidence 2357899999999999998864
Q ss_pred cccccccccccCCcceeecCceeeeecCCCCCCccccccccccCCCCCcCCccccccceeeecCeEEEecceEee----c
Q 006473 401 MESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEI----N 476 (643)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~----g 476 (643)
+|.+|..|++++.++.|||+||.... +
T Consensus 230 -------------------------------------------------~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~ 260 (315)
T 4asc_A 230 -------------------------------------------------FPQERSSLSLVSLVGTLYAIGGFATLETESG 260 (315)
T ss_dssp -------------------------------------------------CSSCCBSCEEEEETTEEEEEEEEEEEECTTS
T ss_pred -------------------------------------------------CCCcccceeEEEECCEEEEECCccccCcCCc
Confidence 69999999999999999999998643 1
Q ss_pred Ce-EEeecceeccccCCccceEEeccC
Q 006473 477 DQ-EITLDDLYSLNLSKLDEWKCIIPA 502 (643)
Q Consensus 477 ~~-e~tl~D~~~ldl~k~d~w~~i~~~ 502 (643)
.. ...++|+|.||+.+ +.|+.+.+.
T Consensus 261 ~~~~~~~~~v~~yd~~~-~~W~~~~~~ 286 (315)
T 4asc_A 261 ELVPTELNDIWRYNEEE-KKWEGVLRE 286 (315)
T ss_dssp CEEEEEEEEEEEEETTT-TEEEEEESC
T ss_pred cccccccCcEEEecCCC-ChhhhhccC
Confidence 11 14589999999999 999999443
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-42 Score=355.69 Aligned_cols=273 Identities=19% Similarity=0.317 Sum_probs=238.8
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~ 160 (643)
++.||||||.... ...++++++||+.+++|..++. .|.+|.+|+++++++.||||||.... ..++++|+
T Consensus 14 ~~~i~~~GG~~~~---~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~l~v~GG~~~~------~~~~~~~~ 82 (301)
T 2vpj_A 14 NEVLLVVGGFGSQ---QSPIDVVEKYDPKTQEWSFLPS--ITRKRRYVASVSLHDRIYVIGGYDGR------SRLSSVEC 82 (301)
T ss_dssp CEEEEEECCEETT---TEECCCEEEEETTTTEEEECCC--CSSCCBSCEEEEETTEEEEECCBCSS------CBCCCEEE
T ss_pred CCEEEEEeCccCC---CcceeEEEEEcCCCCeEEeCCC--CChhhccccEEEECCEEEEEcCCCCC------ccCceEEE
Confidence 6899999994222 2468999999999999999975 56899999999999999999998632 25789999
Q ss_pred EECCCCc---EEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCcc
Q 006473 161 LDLKTNQ---WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237 (643)
Q Consensus 161 yD~~t~~---W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~ 237 (643)
||+.+++ |+.+.+ +|.+|.+|++++++++||||||.... ..++++++||+.+++|+.++++ |.+|.
T Consensus 83 ~d~~~~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~GG~~~~----~~~~~~~~~d~~~~~W~~~~~~-----p~~r~ 151 (301)
T 2vpj_A 83 LDYTADEDGVWYSVAP--MNVRRGLAGATTLGDMIYVSGGFDGS----RRHTSMERYDPNIDQWSMLGDM-----QTARE 151 (301)
T ss_dssp EETTCCTTCCCEEECC--CSSCCBSCEEEEETTEEEEECCBCSS----CBCCEEEEEETTTTEEEEEEEC-----SSCCB
T ss_pred EECCCCCCCeeEECCC--CCCCccceeEEEECCEEEEEcccCCC----cccceEEEEcCCCCeEEECCCC-----CCCcc
Confidence 9999999 999976 89999999999999999999998753 2488999999999999999887 88999
Q ss_pred ceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccc
Q 006473 238 GFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVD 317 (643)
Q Consensus 238 ~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~ 317 (643)
+|++++++++|||+||+... ..++++++||+.+++|+.+.. .|.+|.+|++++++++||||||...
T Consensus 152 ~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~ 217 (301)
T 2vpj_A 152 GAGLVVASGVIYCLGGYDGL-----------NILNSVEKYDPHTGHWTNVTP---MATKRSGAGVALLNDHIYVVGGFDG 217 (301)
T ss_dssp SCEEEEETTEEEEECCBCSS-----------CBCCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEECCBCS
T ss_pred cceEEEECCEEEEECCCCCC-----------cccceEEEEeCCCCcEEeCCC---CCcccccceEEEECCEEEEEeCCCC
Confidence 99999999999999998765 467899999999999999965 4789999999999999999999865
Q ss_pred cccCccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhh
Q 006473 318 MEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEE 397 (643)
Q Consensus 318 ~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (643)
....+++++||+.+++|..+..
T Consensus 218 ---------~~~~~~v~~yd~~~~~W~~~~~------------------------------------------------- 239 (301)
T 2vpj_A 218 ---------TAHLSSVEAYNIRTDSWTTVTS------------------------------------------------- 239 (301)
T ss_dssp ---------SSBCCCEEEEETTTTEEEEECC-------------------------------------------------
T ss_pred ---------CcccceEEEEeCCCCcEEECCC-------------------------------------------------
Confidence 2347899999999999998764
Q ss_pred hhhcccccccccccCCcceeecCceeeeecCCCCCCccccccccccCCCCCcCCccccccceeeecCeEEEecceEeecC
Q 006473 398 ADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEIND 477 (643)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~ 477 (643)
+|.+|..|++++.++.|||+||....
T Consensus 240 ----------------------------------------------------~p~~r~~~~~~~~~~~i~v~GG~~~~-- 265 (301)
T 2vpj_A 240 ----------------------------------------------------MTTPRCYVGATVLRGRLYAIAGYDGN-- 265 (301)
T ss_dssp ----------------------------------------------------CSSCCBSCEEEEETTEEEEECCBCSS--
T ss_pred ----------------------------------------------------CCCcccceeEEEECCEEEEEcCcCCC--
Confidence 69999999999999999999997432
Q ss_pred eEEeecceeccccCCccceEEeccCCc
Q 006473 478 QEITLDDLYSLNLSKLDEWKCIIPASE 504 (643)
Q Consensus 478 ~e~tl~D~~~ldl~k~d~w~~i~~~~~ 504 (643)
..++++|.||+.+ +.|+.+.+.+.
T Consensus 266 --~~~~~v~~yd~~~-~~W~~~~~~~~ 289 (301)
T 2vpj_A 266 --SLLSSIECYDPII-DSWEVVTSMGT 289 (301)
T ss_dssp --SBEEEEEEEETTT-TEEEEEEEEEE
T ss_pred --cccccEEEEcCCC-CeEEEcCCCCc
Confidence 2589999999999 99999865443
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-42 Score=360.10 Aligned_cols=285 Identities=21% Similarity=0.373 Sum_probs=235.3
Q ss_pred CCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccC
Q 006473 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFT 145 (643)
Q Consensus 66 P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~ 145 (643)
..||.++.+ .+.||+|||. ++++||+.+++|... ++..|.||.+|+++++++.||||||...
T Consensus 6 ~~~r~~~~~------~~~i~~~GG~-----------~~~~yd~~~~~W~~~-~~~~~~~r~~~~~~~~~~~lyv~GG~~~ 67 (318)
T 2woz_A 6 DIPRHGMFV------KDLILLVNDT-----------AAVAYDPMENECYLT-ALAEQIPRNHSSIVTQQNQVYVVGGLYV 67 (318)
T ss_dssp SSCCCCCSE------EEEEEEECSS-----------EEEEEETTTTEEEEE-EECTTSCSSEEEEECSSSCEEEEESSCC
T ss_pred cccccccee------cchhhhcccc-----------ceEEECCCCCceecc-cCCccCCccceEEEEECCEEEEECCccc
Confidence 356666544 3689999993 479999999999984 3445689999999999999999999642
Q ss_pred CCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEec
Q 006473 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (643)
Q Consensus 146 ~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (643)
..........+++|+||+.+++|+.+++ +|.+|.+|++++++++||||||..... ...++++++||+.+++|+.+.
T Consensus 68 ~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~~~yd~~~~~W~~~~ 143 (318)
T 2woz_A 68 DEENKDQPLQSYFFQLDNVSSEWVGLPP--LPSARCLFGLGEVDDKIYVVAGKDLQT--EASLDSVLCYDPVAAKWSEVK 143 (318)
T ss_dssp -------CCCBEEEEEETTTTEEEECSC--BSSCBCSCEEEEETTEEEEEEEEBTTT--CCEEEEEEEEETTTTEEEEEC
T ss_pred CccccCCCccccEEEEeCCCCcEEECCC--CCccccccceEEECCEEEEEcCccCCC--CcccceEEEEeCCCCCEeECC
Confidence 2111001234569999999999999976 899999999999999999999986321 346899999999999999998
Q ss_pred cCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE
Q 006473 226 PRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (643)
Q Consensus 226 ~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~ 305 (643)
++ |.+|++|++++++++|||+||.... ...++++++||+.+++|+.+.. .|.+|.+|+++++
T Consensus 144 ~~-----p~~r~~~~~~~~~~~iyv~GG~~~~----------~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~ 205 (318)
T 2woz_A 144 NL-----PIKVYGHNVISHNGMIYCLGGKTDD----------KKCTNRVFIYNPKKGDWKDLAP---MKTPRSMFGVAIH 205 (318)
T ss_dssp CC-----SSCEESCEEEEETTEEEEECCEESS----------SCBCCCEEEEETTTTEEEEECC---CSSCCBSCEEEEE
T ss_pred CC-----CCcccccEEEEECCEEEEEcCCCCC----------CCccceEEEEcCCCCEEEECCC---CCCCcccceEEEE
Confidence 77 8899999999999999999998543 3567899999999999999975 4789999999999
Q ss_pred CCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhccc
Q 006473 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDA 385 (643)
Q Consensus 306 ~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (643)
+++||||||... ....+++++||+.+++|..+..
T Consensus 206 ~~~iyv~GG~~~---------~~~~~~~~~yd~~~~~W~~~~~------------------------------------- 239 (318)
T 2woz_A 206 KGKIVIAGGVTE---------DGLSASVEAFDLKTNKWEVMTE------------------------------------- 239 (318)
T ss_dssp TTEEEEEEEEET---------TEEEEEEEEEETTTCCEEECCC-------------------------------------
T ss_pred CCEEEEEcCcCC---------CCccceEEEEECCCCeEEECCC-------------------------------------
Confidence 999999999865 2357899999999999998764
Q ss_pred CcccchhhhhhhhhhcccccccccccCCcceeecCceeeeecCCCCCCccccccccccCCCCCcCCccccccceeeecCe
Q 006473 386 NEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDT 465 (643)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~ 465 (643)
+|.+|..|++++.++.
T Consensus 240 ----------------------------------------------------------------~p~~r~~~~~~~~~~~ 255 (318)
T 2woz_A 240 ----------------------------------------------------------------FPQERSSISLVSLAGS 255 (318)
T ss_dssp ----------------------------------------------------------------CSSCCBSCEEEEETTE
T ss_pred ----------------------------------------------------------------CCCcccceEEEEECCE
Confidence 6999999999999999
Q ss_pred EEEecceEeecC--e---EEeecceeccccCCccceEEecc
Q 006473 466 LYVYGGMMEIND--Q---EITLDDLYSLNLSKLDEWKCIIP 501 (643)
Q Consensus 466 Lyi~GG~~e~g~--~---e~tl~D~~~ldl~k~d~w~~i~~ 501 (643)
|||+||...... . ...++|+|.||+.+ +.|+.|.+
T Consensus 256 i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~-~~W~~~~~ 295 (318)
T 2woz_A 256 LYAIGGFAMIQLESKEFAPTEVNDIWKYEDDK-KEWAGMLK 295 (318)
T ss_dssp EEEECCBCCBC----CCBCCBCCCEEEEETTT-TEEEEEES
T ss_pred EEEECCeeccCCCCceeccceeeeEEEEeCCC-CEehhhcc
Confidence 999999854211 1 12489999999999 99999943
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=355.90 Aligned_cols=252 Identities=20% Similarity=0.373 Sum_probs=213.0
Q ss_pred CCCCCCCCceEEEEeccCCCEEEEEcceecC--CCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEE
Q 006473 63 VPAPSPRSNCSLNINPLKETELILYGGEFYN--GNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIF 140 (643)
Q Consensus 63 ~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~--g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvf 140 (643)
.+.|.+|.+|+++++ +++||||||...+ +......+++++||+.+++|+.+++ .|.+|.+|++++++++||||
T Consensus 30 ~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~ 104 (315)
T 4asc_A 30 LSSQVPKNHVSLVTK---ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP--LPSPRCLFGLGEALNSIYVV 104 (315)
T ss_dssp CCCCSCSSEEEEECT---TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC--BSSCEESCEEEEETTEEEEE
T ss_pred CCCCCCccceEEEEE---CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC--CCcchhceeEEEECCEEEEE
Confidence 345789999999988 8999999997432 2233466789999999999999865 57899999999999999999
Q ss_pred eCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 141 GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
||...... ...++++|+||+.+++|+.+++ +|.+|++|++++++++||||||.... ...++++++||+.+++
T Consensus 105 GG~~~~~~---~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~yd~~~~~ 176 (315)
T 4asc_A 105 GGREIKDG---ERCLDSVMCYDRLSFKWGESDP--LPYVVYGHTVLSHMDLVYVIGGKGSD---RKCLNKMCVYDPKKFE 176 (315)
T ss_dssp CCEESSTT---CCBCCCEEEEETTTTEEEECCC--CSSCCBSCEEEEETTEEEEECCBCTT---SCBCCCEEEEETTTTE
T ss_pred eCCcCCCC---CcccceEEEECCCCCcEeECCC--CCCcccceeEEEECCEEEEEeCCCCC---CcccceEEEEeCCCCe
Confidence 99753211 1357999999999999999987 89999999999999999999998533 3368999999999999
Q ss_pred eEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceee
Q 006473 221 WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF 300 (643)
Q Consensus 221 W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~ 300 (643)
|+.++++ |.+|.+|++++++++|||+||+... ...+++++||+.+++|+.+.. +|.+|.+|
T Consensus 177 W~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~ 237 (315)
T 4asc_A 177 WKELAPM-----QTARSLFGATVHDGRIIVAAGVTDT-----------GLTSSAEVYSITDNKWAPFEA---FPQERSSL 237 (315)
T ss_dssp EEECCCC-----SSCCBSCEEEEETTEEEEEEEECSS-----------SEEEEEEEEETTTTEEEEECC---CSSCCBSC
T ss_pred EEECCCC-----CCchhceEEEEECCEEEEEeccCCC-----------CccceEEEEECCCCeEEECCC---CCCcccce
Confidence 9999877 8899999999999999999998765 468899999999999999975 48899999
Q ss_pred EEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEe
Q 006473 301 SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346 (643)
Q Consensus 301 s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l 346 (643)
++++++++||||||.+.............++++++||+.+++|..+
T Consensus 238 ~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 238 SLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred eEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 9999999999999986532111111224678999999999999877
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-41 Score=353.13 Aligned_cols=250 Identities=16% Similarity=0.382 Sum_probs=209.6
Q ss_pred CCCCCCCceEEEEeccCCCEEEEEcceecCCC--CceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEe
Q 006473 64 PAPSPRSNCSLNINPLKETELILYGGEFYNGN--KTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFG 141 (643)
Q Consensus 64 ~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~--~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfG 141 (643)
+.|.+|.+|+++++ ++.||||||...+.. .....+++++||+.+++|..+++ .|.+|++|++++++++|||||
T Consensus 42 ~~~~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~G 116 (318)
T 2woz_A 42 AEQIPRNHSSIVTQ---QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP--LPSARCLFGLGEVDDKIYVVA 116 (318)
T ss_dssp CTTSCSSEEEEECS---SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC--BSSCBCSCEEEEETTEEEEEE
T ss_pred CccCCccceEEEEE---CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC--CCccccccceEEECCEEEEEc
Confidence 45689999999888 899999999643322 12344569999999999999965 578999999999999999999
Q ss_pred CccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCce
Q 006473 142 GEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (643)
Q Consensus 142 G~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W 221 (643)
|...... ..++++|+||+.+++|+.+.+ +|.+|++|++++++++||||||..... ..++++++||+.+++|
T Consensus 117 G~~~~~~----~~~~~~~~yd~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~~yd~~~~~W 187 (318)
T 2woz_A 117 GKDLQTE----ASLDSVLCYDPVAAKWSEVKN--LPIKVYGHNVISHNGMIYCLGGKTDDK---KCTNRVFIYNPKKGDW 187 (318)
T ss_dssp EEBTTTC----CEEEEEEEEETTTTEEEEECC--CSSCEESCEEEEETTEEEEECCEESSS---CBCCCEEEEETTTTEE
T ss_pred CccCCCC----cccceEEEEeCCCCCEeECCC--CCCcccccEEEEECCEEEEEcCCCCCC---CccceEEEEcCCCCEE
Confidence 9864222 357899999999999999986 899999999999999999999986532 3689999999999999
Q ss_pred EEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeE
Q 006473 222 QEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFS 301 (643)
Q Consensus 222 ~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s 301 (643)
+.++++ |.+|.+|++++++++|||+||.... ...+++++||+.+++|+.+.. .|.+|.+|+
T Consensus 188 ~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~ 248 (318)
T 2woz_A 188 KDLAPM-----KTPRSMFGVAIHKGKIVIAGGVTED-----------GLSASVEAFDLKTNKWEVMTE---FPQERSSIS 248 (318)
T ss_dssp EEECCC-----SSCCBSCEEEEETTEEEEEEEEETT-----------EEEEEEEEEETTTCCEEECCC---CSSCCBSCE
T ss_pred EECCCC-----CCCcccceEEEECCEEEEEcCcCCC-----------CccceEEEEECCCCeEEECCC---CCCcccceE
Confidence 999877 8899999999999999999998765 568899999999999999965 478999999
Q ss_pred EEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEe
Q 006473 302 MCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346 (643)
Q Consensus 302 ~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l 346 (643)
+++++++||||||..........+.....+++|+||+.+++|..+
T Consensus 249 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 249 LVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 999999999999987532222222235689999999999999887
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-40 Score=343.70 Aligned_cols=239 Identities=19% Similarity=0.276 Sum_probs=210.6
Q ss_pred cCCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEe
Q 006473 62 NVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFG 141 (643)
Q Consensus 62 ~~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfG 141 (643)
...+|.+|.+|+++++ +++||||||.. +. ..++++++||+.+++|+.+++ .|.+|.+|++++++++|||||
T Consensus 45 ~~~~p~~r~~~~~~~~---~~~lyv~GG~~--~~--~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~G 115 (302)
T 2xn4_A 45 VAELPSRRCRAGMVYM---AGLVFAVGGFN--GS--LRVRTVDSYDPVKDQWTSVAN--MRDRRSTLGAAVLNGLLYAVG 115 (302)
T ss_dssp ECCCSSCCBSCEEEEE---TTEEEEESCBC--SS--SBCCCEEEEETTTTEEEEECC--CSSCCBSCEEEEETTEEEEEE
T ss_pred cccCCcccccceEEEE---CCEEEEEeCcC--CC--ccccceEEECCCCCceeeCCC--CCccccceEEEEECCEEEEEc
Confidence 3578899999999998 89999999963 22 357899999999999999976 468999999999999999999
Q ss_pred CccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCce
Q 006473 142 GEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (643)
Q Consensus 142 G~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W 221 (643)
|.... ..++++|+||+.+++|+.+++ +|.+|++|++++++++||+|||..... ..+++++++||+.+++|
T Consensus 116 G~~~~------~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~~~yd~~~~~W 185 (302)
T 2xn4_A 116 GFDGS------TGLSSVEAYNIKSNEWFHVAP--MNTRRSSVGVGVVGGLLYAVGGYDVAS--RQCLSTVECYNATTNEW 185 (302)
T ss_dssp EECSS------CEEEEEEEEETTTTEEEEECC--CSSCCBSCEEEEETTEEEEECCEETTT--TEECCCEEEEETTTTEE
T ss_pred CCCCC------ccCceEEEEeCCCCeEeecCC--CCCcccCceEEEECCEEEEEeCCCCCC--CccccEEEEEeCCCCcE
Confidence 97543 257899999999999999987 799999999999999999999997643 23689999999999999
Q ss_pred EEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeE
Q 006473 222 QEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFS 301 (643)
Q Consensus 222 ~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s 301 (643)
+.+.++ |.+|.+|++++++++|||+||.+.. ...+++++||+.+++|+.+.. +|.+|.+|+
T Consensus 186 ~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~yd~~~~~W~~~~~---~~~~r~~~~ 246 (302)
T 2xn4_A 186 TYIAEM-----STRRSGAGVGVLNNLLYAVGGHDGP-----------LVRKSVEVYDPTTNAWRQVAD---MNMCRRNAG 246 (302)
T ss_dssp EEECCC-----SSCCBSCEEEEETTEEEEECCBSSS-----------SBCCCEEEEETTTTEEEEECC---CSSCCBSCE
T ss_pred EECCCC-----ccccccccEEEECCEEEEECCCCCC-----------cccceEEEEeCCCCCEeeCCC---CCCccccCe
Confidence 999877 8899999999999999999998754 457889999999999999975 477899999
Q ss_pred EEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeE
Q 006473 302 MCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (643)
Q Consensus 302 ~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (643)
+++++++||||||.+. ...++++++||+.+++|..++
T Consensus 247 ~~~~~~~i~v~GG~~~---------~~~~~~v~~yd~~~~~W~~~~ 283 (302)
T 2xn4_A 247 VCAVNGLLYVVGGDDG---------SCNLASVEYYNPTTDKWTVVS 283 (302)
T ss_dssp EEEETTEEEEECCBCS---------SSBCCCEEEEETTTTEEEECS
T ss_pred EEEECCEEEEECCcCC---------CcccccEEEEcCCCCeEEECC
Confidence 9999999999999864 235789999999999999876
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-40 Score=344.39 Aligned_cols=243 Identities=19% Similarity=0.257 Sum_probs=215.3
Q ss_pred ccCCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEE
Q 006473 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIF 140 (643)
Q Consensus 61 ~~~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvf 140 (643)
...++|.+|.+|+++++ ++.||||||.. ...++++++||+.+++|..+++ .|.+|.+|++++++++||||
T Consensus 38 ~~~~~p~~r~~~~~~~~---~~~lyv~GG~~-----~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~ 107 (306)
T 3ii7_A 38 DIRCPFEKRRDAACVFW---DNVVYILGGSQ-----LFPIKRMDCYNVVKDSWYSKLG--PPTPRDSLAACAAEGKIYTS 107 (306)
T ss_dssp ECCCCSCCCBSCEEEEE---TTEEEEECCBS-----SSBCCEEEEEETTTTEEEEEEC--CSSCCBSCEEEEETTEEEEE
T ss_pred cCCCCCcccceeEEEEE---CCEEEEEeCCC-----CCCcceEEEEeCCCCeEEECCC--CCccccceeEEEECCEEEEE
Confidence 44678999999999999 89999999963 3367999999999999999976 47899999999999999999
Q ss_pred eCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 141 GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
||..... ..++++|+||+.+++|+.++. +|.+|.+|++++++++||||||.........+++++++||+.+++
T Consensus 108 GG~~~~~-----~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~ 180 (306)
T 3ii7_A 108 GGSEVGN-----SALYLFECYDTRTESWHTKPS--MLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET 180 (306)
T ss_dssp CCBBTTB-----SCCCCEEEEETTTTEEEEECC--CSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTE
T ss_pred CCCCCCC-----cEeeeEEEEeCCCCceEeCCC--CcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCe
Confidence 9986322 257999999999999999977 899999999999999999999997655434568999999999999
Q ss_pred eEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceee
Q 006473 221 WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF 300 (643)
Q Consensus 221 W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~ 300 (643)
|+.++++ |.+|.+|++++++++|||+||.... ...+++++||+.+++|+.+.. .|.+|.+|
T Consensus 181 W~~~~~~-----p~~r~~~~~~~~~~~i~v~GG~~~~-----------~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~ 241 (306)
T 3ii7_A 181 WTELCPM-----IEARKNHGLVFVKDKIFAVGGQNGL-----------GGLDNVEYYDIKLNEWKMVSP---MPWKGVTV 241 (306)
T ss_dssp EEEECCC-----SSCCBSCEEEEETTEEEEECCEETT-----------EEBCCEEEEETTTTEEEECCC---CSCCBSCC
T ss_pred EEECCCc-----cchhhcceEEEECCEEEEEeCCCCC-----------CCCceEEEeeCCCCcEEECCC---CCCCccce
Confidence 9999877 8899999999999999999998765 567899999999999999965 47899999
Q ss_pred EEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 301 SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 301 s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
++++++++||||||.+. ....+++++||+.+++|..++.
T Consensus 242 ~~~~~~~~i~v~GG~~~---------~~~~~~~~~yd~~~~~W~~~~~ 280 (306)
T 3ii7_A 242 KCAAVGSIVYVLAGFQG---------VGRLGHILEYNTETDKWVANSK 280 (306)
T ss_dssp EEEEETTEEEEEECBCS---------SSBCCEEEEEETTTTEEEEEEE
T ss_pred eEEEECCEEEEEeCcCC---------CeeeeeEEEEcCCCCeEEeCCC
Confidence 99999999999999864 2357899999999999999876
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-40 Score=343.56 Aligned_cols=243 Identities=19% Similarity=0.289 Sum_probs=213.9
Q ss_pred ccCCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEE
Q 006473 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIF 140 (643)
Q Consensus 61 ~~~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvf 140 (643)
....+|.+|.+|+++++ +++||||||..........++++++||+.+++|+.+++ .|.+|.+|++++++++|||+
T Consensus 53 ~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~ 127 (308)
T 1zgk_A 53 RLADLQVPRSGLAGCVV---GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAP--MSVPRNRIGVGVIDGHIYAV 127 (308)
T ss_dssp ECCCCSSCCBSCEEEEE---TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCC--CSSCCBTCEEEEETTEEEEE
T ss_pred ECCCCCcccccceEEEE---CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCC--CCcCccccEEEEECCEEEEE
Confidence 44678999999999998 89999999974322334578999999999999999976 46899999999999999999
Q ss_pred eCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 141 GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
||.... ..++++++||+.+++|+.+++ +|.+|.+|++++++++||||||..... .++++++||+.+++
T Consensus 128 GG~~~~------~~~~~~~~yd~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~----~~~~~~~yd~~~~~ 195 (308)
T 1zgk_A 128 GGSHGC------IHHNSVERYEPERDEWHLVAP--MLTRRIGVGVAVLNRLLYAVGGFDGTN----RLNSAECYYPERNE 195 (308)
T ss_dssp CCEETT------EECCCEEEEETTTTEEEECCC--CSSCCBSCEEEEETTEEEEECCBCSSC----BCCCEEEEETTTTE
T ss_pred cCCCCC------cccccEEEECCCCCeEeECCC--CCccccceEEEEECCEEEEEeCCCCCC----cCceEEEEeCCCCe
Confidence 998653 357899999999999999987 899999999999999999999986543 38999999999999
Q ss_pred eEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceee
Q 006473 221 WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF 300 (643)
Q Consensus 221 W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~ 300 (643)
|+.+.++ |.+|.+|++++++++|||+||+... ...+++++||+.+++|+.+.. +|.+|.+|
T Consensus 196 W~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~v~~yd~~~~~W~~~~~---~p~~r~~~ 256 (308)
T 1zgk_A 196 WRMITAM-----NTIRSGAGVCVLHNCIYAAGGYDGQ-----------DQLNSVERYDVETETWTFVAP---MKHRRSAL 256 (308)
T ss_dssp EEECCCC-----SSCCBSCEEEEETTEEEEECCBCSS-----------SBCCCEEEEETTTTEEEECCC---CSSCCBSC
T ss_pred EeeCCCC-----CCccccceEEEECCEEEEEeCCCCC-----------CccceEEEEeCCCCcEEECCC---CCCCccce
Confidence 9999876 8899999999999999999998754 457899999999999999975 47899999
Q ss_pred EEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 301 SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 301 s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
++++++++||||||.+. ...++++++||+.+++|..++.
T Consensus 257 ~~~~~~~~i~v~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~ 295 (308)
T 1zgk_A 257 GITVHQGRIYVLGGYDG---------HTFLDSVECYDPDTDTWSEVTR 295 (308)
T ss_dssp EEEEETTEEEEECCBCS---------SCBCCEEEEEETTTTEEEEEEE
T ss_pred EEEEECCEEEEEcCcCC---------CcccceEEEEcCCCCEEeecCC
Confidence 99999999999999764 3457899999999999999865
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-39 Score=332.15 Aligned_cols=239 Identities=19% Similarity=0.281 Sum_probs=210.6
Q ss_pred ccCCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCc---EEEecCCCCCCCceeeEEEEECCEE
Q 006473 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE---WKVISSPNSPPPRSAHQAVSWKNYL 137 (643)
Q Consensus 61 ~~~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~---W~~l~s~~~P~pRs~ha~~~~~~~i 137 (643)
....+|.+|.+|+++++ +++||||||.. + ...++++++||+.+++ |+.+++ .|.+|.+|++++++++|
T Consensus 45 ~~~~~p~~r~~~~~~~~---~~~l~v~GG~~--~--~~~~~~~~~~d~~~~~~~~W~~~~~--~p~~r~~~~~~~~~~~l 115 (301)
T 2vpj_A 45 FLPSITRKRRYVASVSL---HDRIYVIGGYD--G--RSRLSSVECLDYTADEDGVWYSVAP--MNVRRGLAGATTLGDMI 115 (301)
T ss_dssp ECCCCSSCCBSCEEEEE---TTEEEEECCBC--S--SCBCCCEEEEETTCCTTCCCEEECC--CSSCCBSCEEEEETTEE
T ss_pred eCCCCChhhccccEEEE---CCEEEEEcCCC--C--CccCceEEEEECCCCCCCeeEECCC--CCCCccceeEEEECCEE
Confidence 34568889999999998 89999999963 2 2367899999999999 999965 57899999999999999
Q ss_pred EEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcC
Q 006473 138 YIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (643)
Q Consensus 138 yvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~ 217 (643)
||+||.... ..++++|+||+.+++|+.+++ +|.+|.+|++++++++||+|||.... ..++++++||+.
T Consensus 116 yv~GG~~~~------~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~~d~~ 183 (301)
T 2vpj_A 116 YVSGGFDGS------RRHTSMERYDPNIDQWSMLGD--MQTAREGAGLVVASGVIYCLGGYDGL----NILNSVEKYDPH 183 (301)
T ss_dssp EEECCBCSS------CBCCEEEEEETTTTEEEEEEE--CSSCCBSCEEEEETTEEEEECCBCSS----CBCCCEEEEETT
T ss_pred EEEcccCCC------cccceEEEEcCCCCeEEECCC--CCCCcccceEEEECCEEEEECCCCCC----cccceEEEEeCC
Confidence 999998643 247899999999999999987 79999999999999999999998653 268999999999
Q ss_pred CCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCc
Q 006473 218 QFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPR 297 (643)
Q Consensus 218 t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R 297 (643)
+++|+.+.++ |.+|.+|++++++++|||+||.... ...+++++||+.+++|+.+.. +|.+|
T Consensus 184 ~~~W~~~~~~-----p~~r~~~~~~~~~~~i~v~GG~~~~-----------~~~~~v~~yd~~~~~W~~~~~---~p~~r 244 (301)
T 2vpj_A 184 TGHWTNVTPM-----ATKRSGAGVALLNDHIYVVGGFDGT-----------AHLSSVEAYNIRTDSWTTVTS---MTTPR 244 (301)
T ss_dssp TTEEEEECCC-----SSCCBSCEEEEETTEEEEECCBCSS-----------SBCCCEEEEETTTTEEEEECC---CSSCC
T ss_pred CCcEEeCCCC-----CcccccceEEEECCEEEEEeCCCCC-----------cccceEEEEeCCCCcEEECCC---CCCcc
Confidence 9999999876 8899999999999999999998765 347899999999999999965 47899
Q ss_pred eeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 298 AGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 298 ~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
.+|++++++++||||||... ...++++++||+.+++|..++.
T Consensus 245 ~~~~~~~~~~~i~v~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~ 286 (301)
T 2vpj_A 245 CYVGATVLRGRLYAIAGYDG---------NSLLSSIECYDPIIDSWEVVTS 286 (301)
T ss_dssp BSCEEEEETTEEEEECCBCS---------SSBEEEEEEEETTTTEEEEEEE
T ss_pred cceeEEEECCEEEEEcCcCC---------CcccccEEEEcCCCCeEEEcCC
Confidence 99999999999999999764 2356899999999999999876
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=359.32 Aligned_cols=244 Identities=13% Similarity=0.223 Sum_probs=203.0
Q ss_pred CCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEec-C---CCCCCCceeeEEEEE--CCE
Q 006473 63 VPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVIS-S---PNSPPPRSAHQAVSW--KNY 136 (643)
Q Consensus 63 ~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~-s---~~~P~pRs~ha~~~~--~~~ 136 (643)
..+|.+|.+++++ + ++.||||||.. + ..++++|+||+.+++|..++ + ...|.+|++|+++++ +++
T Consensus 383 ~~~p~rr~g~~~~-~---~~~iyv~GG~~--~---~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~ 453 (695)
T 2zwa_A 383 ECPINRKFGDVDV-A---GNDVFYMGGSN--P---YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQ 453 (695)
T ss_dssp CCTTCCBSCEEEE-C---SSCEEEECCBS--S---SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTE
T ss_pred CCCCCCceeEEEE-E---CCEEEEECCCC--C---CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCE
Confidence 4456677776554 5 78999999952 2 36799999999999999998 4 246899999999999 999
Q ss_pred EEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEE
Q 006473 137 LYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFD 215 (643)
Q Consensus 137 iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD 215 (643)
||||||...... .++++|+||+.+++|+.+.+ +|.+|++|+++++ +++||||||..... ++++||
T Consensus 454 lyv~GG~~~~~~-----~~~dv~~yd~~t~~W~~~~~--~p~~R~~h~~~~~~~~~iyv~GG~~~~~-------~v~~yd 519 (695)
T 2zwa_A 454 LLLIGGRKAPHQ-----GLSDNWIFDMKTREWSMIKS--LSHTRFRHSACSLPDGNVLILGGVTEGP-------AMLLYN 519 (695)
T ss_dssp EEEECCBSSTTC-----BCCCCEEEETTTTEEEECCC--CSBCCBSCEEEECTTSCEEEECCBCSSC-------SEEEEE
T ss_pred EEEEcCCCCCCC-----ccccEEEEeCCCCcEEECCC--CCCCcccceEEEEcCCEEEEECCCCCCC-------CEEEEE
Confidence 999999865432 47999999999999999976 8999999999997 99999999986532 899999
Q ss_pred cCCCceEEeccCCCCCCCCCccceeEEEeC---CEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCe------eEE
Q 006473 216 LDQFKWQEIKPRFGSMWPSPRSGFQFFVYQ---DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE------WSK 286 (643)
Q Consensus 216 ~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~---~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~------W~~ 286 (643)
+.+++|+.+.+. +..|.+|++|++++++ ++|||+||+... ....++++|+||+.+++ |+.
T Consensus 520 ~~t~~W~~~~~~--g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~---------~~~~~~~v~~yd~~~~~w~~~~~W~~ 588 (695)
T 2zwa_A 520 VTEEIFKDVTPK--DEFFQNSLVSAGLEFDPVSKQGIILGGGFMD---------QTTVSDKAIIFKYDAENATEPITVIK 588 (695)
T ss_dssp TTTTEEEECCCS--SGGGGSCCBSCEEEEETTTTEEEEECCBCTT---------SSCBCCEEEEEEECTTCSSCCEEEEE
T ss_pred CCCCceEEccCC--CCCCCcccceeEEEEeCCCCEEEEECCcCCC---------CCeeeCcEEEEEccCCccccceEEEE
Confidence 999999999874 3348999999988875 899999998654 12567899999999999 898
Q ss_pred eccCCCCCCCceeeEEEEEC-CeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 287 VKKIGMPPGPRAGFSMCVHK-KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 287 l~~~g~~P~~R~g~s~~~~~-~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
+..+ +|.+|.+|++++++ ++||||||...... ....+++++||+.+++|..+..
T Consensus 589 ~~~~--p~~~R~~~~~~~~~~~~iyv~GG~~~~~~------~~~~~~v~~yd~~t~~W~~~~~ 643 (695)
T 2zwa_A 589 KLQH--PLFQRYGSQIKYITPRKLLIVGGTSPSGL------FDRTNSIISLDPLSETLTSIPI 643 (695)
T ss_dssp EEEC--GGGCCBSCEEEEEETTEEEEECCBCSSCC------CCTTTSEEEEETTTTEEEECCC
T ss_pred cCCC--CCCCcccceEEEeCCCEEEEECCccCCCC------CCCCCeEEEEECCCCeEEEeec
Confidence 8763 45789999999999 99999999864211 1357899999999999995443
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=312.93 Aligned_cols=266 Identities=18% Similarity=0.211 Sum_probs=204.5
Q ss_pred ccCCCC-CCCCceEEEEeccCCCEEEEEcceec-CCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEE
Q 006473 61 DNVPAP-SPRSNCSLNINPLKETELILYGGEFY-NGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLY 138 (643)
Q Consensus 61 ~~~~~P-~~R~~~s~~~~~~~~~~lyvfGG~~~-~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iy 138 (643)
...++| .+|.+|+++++ +++||||||... .......++++++||+.+++|+.++++. |.+|.+|++++++++||
T Consensus 47 ~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-p~~r~~~~~~~~~~~iy 122 (357)
T 2uvk_A 47 ALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA-PMGMAGHVTFVHNGKAY 122 (357)
T ss_dssp ECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCC-SSCCSSEEEEEETTEEE
T ss_pred ECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCC-CcccccceEEEECCEEE
Confidence 455677 89999999999 899999999732 2223457899999999999999998876 79999999999999999
Q ss_pred EEeCccCCC----------------------------CCCcceecCeEEEEECCCCcEEEeccCCCCCCC-ceeEEEEEC
Q 006473 139 IFGGEFTSP----------------------------NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR-SGHRMVLYK 189 (643)
Q Consensus 139 vfGG~~~~~----------------------------~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R-s~h~~~~~~ 189 (643)
||||..... ....+..++++++||+.+++|+.+.+ +|.+| .+|++++++
T Consensus 123 v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~--~p~~~~~~~~~~~~~ 200 (357)
T 2uvk_A 123 VTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGE--SPWYGTAGAAVVNKG 200 (357)
T ss_dssp EEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEE--CSSCCCBSCEEEEET
T ss_pred EEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCC--CCCCCcccccEEEEC
Confidence 999974321 00001246899999999999999976 67665 459999999
Q ss_pred CEEEEEeeeecCCCceeeeccEEEEEc--CCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCc---cCC
Q 006473 190 HKIIVFGGFYDTLREVRYYNDLYVFDL--DQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTD---KNQ 264 (643)
Q Consensus 190 ~~lyvfGG~~~~~~~~~~~~dv~~yD~--~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~---~~~ 264 (643)
++||||||..... ..++++++||+ .+++|+.+..++ .|.+|.+|++++++++|||+||+....... .+.
T Consensus 201 ~~iyv~GG~~~~~---~~~~~v~~~d~d~~~~~W~~~~~~~---~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~ 274 (357)
T 2uvk_A 201 DKTWLINGEAKPG---LRTDAVFELDFTGNNLKWNKLAPVS---SPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGK 274 (357)
T ss_dssp TEEEEECCEEETT---EECCCEEEEECC---CEEEECCCSS---TTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTC
T ss_pred CEEEEEeeecCCC---cccCceEEEEecCCCCcEEecCCCC---CCcccccceEEEECCEEEEEcCccccCCcccccccc
Confidence 9999999987543 35789999987 899999998873 256678899999999999999975320000 000
Q ss_pred ---CCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCC
Q 006473 265 ---SEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (643)
Q Consensus 265 ---~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (643)
......+.++++||+.+++|+.+.. +|.+|.+|++++++++||||||.+.. ...+++|++|+++++
T Consensus 275 ~~~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~~--------~~~~~~v~~l~~~~~ 343 (357)
T 2uvk_A 275 NYAHEGLKKSYSTDIHLWHNGKWDKSGE---LSQGRAYGVSLPWNNSLLIIGGETAG--------GKAVTDSVLITVKDN 343 (357)
T ss_dssp SSTTTTCCCEECCEEEECC---CEEEEE---CSSCCBSSEEEEETTEEEEEEEECGG--------GCEEEEEEEEEC-CC
T ss_pred eeccccccceeeEEEEecCCCceeeCCC---CCCCcccceeEEeCCEEEEEeeeCCC--------CCEeeeEEEEEEcCc
Confidence 0112345789999999999999975 47899999999999999999998652 234799999999999
Q ss_pred cEEEeEec
Q 006473 342 RWYPLELR 349 (643)
Q Consensus 342 ~W~~l~~~ 349 (643)
+|..+.+.
T Consensus 344 ~~~~~~~~ 351 (357)
T 2uvk_A 344 KVTVQNLE 351 (357)
T ss_dssp SCEEEC--
T ss_pred EeEeeecc
Confidence 99998764
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=318.15 Aligned_cols=242 Identities=14% Similarity=0.155 Sum_probs=202.3
Q ss_pred CCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEec-c---CCCCCCCceeEEEEE--CCEE
Q 006473 119 PNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLN-L---KGCPSPRSGHRMVLY--KHKI 192 (643)
Q Consensus 119 ~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~-~---~g~P~~Rs~h~~~~~--~~~l 192 (643)
+..|.+|++|+++ +++.||||||... . .++++|+||+.+++|+.+. + ..+|.+|.+|+++++ +++|
T Consensus 383 ~~~p~rr~g~~~~-~~~~iyv~GG~~~--~-----~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~l 454 (695)
T 2zwa_A 383 ECPINRKFGDVDV-AGNDVFYMGGSNP--Y-----RVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQL 454 (695)
T ss_dssp CCTTCCBSCEEEE-CSSCEEEECCBSS--S-----BCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEE
T ss_pred CCCCCCceeEEEE-ECCEEEEECCCCC--C-----CcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEE
Confidence 4456677776554 8999999999765 1 4689999999999999998 4 236999999999999 9999
Q ss_pred EEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCcee
Q 006473 193 IVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIH 271 (643)
Q Consensus 193 yvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~ 271 (643)
|||||..... ..++++|+||+.+++|+.+.++ |.+|++|+++++ +++|||+||+... .
T Consensus 455 yv~GG~~~~~---~~~~dv~~yd~~t~~W~~~~~~-----p~~R~~h~~~~~~~~~iyv~GG~~~~-----------~-- 513 (695)
T 2zwa_A 455 LLIGGRKAPH---QGLSDNWIFDMKTREWSMIKSL-----SHTRFRHSACSLPDGNVLILGGVTEG-----------P-- 513 (695)
T ss_dssp EEECCBSSTT---CBCCCCEEEETTTTEEEECCCC-----SBCCBSCEEEECTTSCEEEECCBCSS-----------C--
T ss_pred EEEcCCCCCC---CccccEEEEeCCCCcEEECCCC-----CCCcccceEEEEcCCEEEEECCCCCC-----------C--
Confidence 9999986543 2689999999999999999877 899999999996 9999999999765 1
Q ss_pred eeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEEC---CeEEEeccccccccCccccccccCCcEEEEECCCCc------
Q 006473 272 SDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHK---KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR------ 342 (643)
Q Consensus 272 ~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~---~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~------ 342 (643)
++|+||+.+++|+.+...+..|.+|.+|++++++ ++||||||..... ..+++++++||+.+++
T Consensus 514 -~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~-------~~~~~~v~~yd~~~~~w~~~~~ 585 (695)
T 2zwa_A 514 -AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQ-------TTVSDKAIIFKYDAENATEPIT 585 (695)
T ss_dssp -SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTS-------SCBCCEEEEEEECTTCSSCCEE
T ss_pred -CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCC-------CeeeCcEEEEEccCCccccceE
Confidence 8999999999999999877778999999988876 8999999985421 2467999999999999
Q ss_pred EEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeecCce
Q 006473 343 WYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGV 422 (643)
Q Consensus 343 W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (643)
|..+...
T Consensus 586 W~~~~~~------------------------------------------------------------------------- 592 (695)
T 2zwa_A 586 VIKKLQH------------------------------------------------------------------------- 592 (695)
T ss_dssp EEEEEEC-------------------------------------------------------------------------
T ss_pred EEEcCCC-------------------------------------------------------------------------
Confidence 5555440
Q ss_pred eeeecCCCCCCccccccccccCCCCCcCCccccccceeeec-CeEEEecceEeecCeEEeecceeccccCCccceEEe
Q 006473 423 LAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGK-DTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCI 499 (643)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~-~~Lyi~GG~~e~g~~e~tl~D~~~ldl~k~d~w~~i 499 (643)
.|.+|++|++++.+ +.|||+||....+.. ..++++|.||+.+ +.|+.+
T Consensus 593 ---------------------------p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~-~~~~~v~~yd~~t-~~W~~~ 641 (695)
T 2zwa_A 593 ---------------------------PLFQRYGSQIKYITPRKLLIVGGTSPSGLF-DRTNSIISLDPLS-ETLTSI 641 (695)
T ss_dssp ---------------------------GGGCCBSCEEEEEETTEEEEECCBCSSCCC-CTTTSEEEEETTT-TEEEEC
T ss_pred ---------------------------CCCCcccceEEEeCCCEEEEECCccCCCCC-CCCCeEEEEECCC-CeEEEe
Confidence 26889999999999 999999998533211 2489999999999 999954
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-30 Score=296.49 Aligned_cols=256 Identities=11% Similarity=0.042 Sum_probs=183.0
Q ss_pred CCCCCceEEEEeccCCCEEEEEcceecCC--CCceeeccEEEEECCCCcEEEecCCCCCCCceee--EEEE-ECCEEEEE
Q 006473 66 PSPRSNCSLNINPLKETELILYGGEFYNG--NKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAH--QAVS-WKNYLYIF 140 (643)
Q Consensus 66 P~~R~~~s~~~~~~~~~~lyvfGG~~~~g--~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~h--a~~~-~~~~iyvf 140 (643)
|.||.++++++++. +++||||||...+. ......+.+++||+.+++|+.++.++ .+|..| ++++ .+++|||+
T Consensus 183 ~~P~~~~~~av~~~-~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~--~~~~~~~~~~~~~~~g~lyv~ 259 (656)
T 1k3i_A 183 DLPIVPAAAAIEPT-SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV--TKHDMFCPGISMDGNGQIVVT 259 (656)
T ss_dssp ECSSCCSEEEEETT-TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE--CSCCCSSCEEEECTTSCEEEE
T ss_pred cCCCCceeEEEEec-CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC--CCCCCccccccCCCCCCEEEe
Confidence 34556777777753 58999999964321 11123457999999999999887653 455544 3444 48999999
Q ss_pred eCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCC
Q 006473 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (643)
Q Consensus 141 GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~ 219 (643)
||... .++++||+.+++|+.+.. +|.+|.+|+++++ +++||||||..... ..++++++||+.++
T Consensus 260 GG~~~----------~~v~~yd~~t~~W~~~~~--~~~~R~~~s~~~~~dg~iyv~GG~~~~~---~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 260 GGNDA----------KKTSLYDSSSDSWIPGPD--MQVARGYQSSATMSDGRVFTIGGSWSGG---VFEKNGEVYSPSSK 324 (656)
T ss_dssp CSSST----------TCEEEEEGGGTEEEECCC--CSSCCSSCEEEECTTSCEEEECCCCCSS---SCCCCEEEEETTTT
T ss_pred CCCCC----------CceEEecCcCCceeECCC--CCccccccceEEecCCeEEEEeCcccCC---cccccceEeCCCCC
Confidence 99743 379999999999999976 8999999999999 99999999954322 25889999999999
Q ss_pred ceEEec-----cCCCCCC----------------------------------------------------CCCccceeEE
Q 006473 220 KWQEIK-----PRFGSMW----------------------------------------------------PSPRSGFQFF 242 (643)
Q Consensus 220 ~W~~v~-----~~~~~~~----------------------------------------------------P~~R~~~s~~ 242 (643)
+|+.++ +++.... +.++..++++
T Consensus 325 ~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av 404 (656)
T 1k3i_A 325 TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV 404 (656)
T ss_dssp EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred cceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE
Confidence 999973 2221100 0112233444
Q ss_pred E---eCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEecccccc
Q 006473 243 V---YQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDM 318 (643)
Q Consensus 243 ~---~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~ 318 (643)
. ++++|||+||..... . .........+++||+.+++|..+. .+..|.+|.+|+++++ +++|||+||....
T Consensus 405 ~~~~~~~~i~v~GG~~~~~--~---~~~~~~~~~v~~yd~~~~~W~~~~-~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~ 478 (656)
T 1k3i_A 405 MYDAVKGKILTFGGSPDYQ--D---SDATTNAHIITLGEPGTSPNTVFA-SNGLYFARTFHTSVVLPDGSTFITGGQRRG 478 (656)
T ss_dssp EEETTTTEEEEECCBSSSS--S---SBCCCCEEEEECCSTTSCCEEEEC-TTCCSSCCBSCEEEECTTSCEEEECCBSBC
T ss_pred eccCCCCeEEEEeCCCCCC--C---CCcCCcceEEEcCCCCCCCeeEEc-cCCCCCCcccCCeEECCCCCEEEECCcccC
Confidence 3 489999999975320 0 000112237899999999999986 2345889999999988 9999999997542
Q ss_pred ccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 319 EMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 319 ~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
.... .....+++++||+.+++|..+..
T Consensus 479 ~~~~---~~~~~~~v~~ydp~t~~W~~~~~ 505 (656)
T 1k3i_A 479 IPFE---DSTPVFTPEIYVPEQDTFYKQNP 505 (656)
T ss_dssp CTTC---CCSBCCCCEEEEGGGTEEEECCC
T ss_pred cCcC---CCCcccceEEEcCCCCceeecCC
Confidence 1000 13457899999999999988654
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=274.03 Aligned_cols=268 Identities=13% Similarity=0.040 Sum_probs=197.1
Q ss_pred EEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCC
Q 006473 103 LYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (643)
Q Consensus 103 v~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (643)
+..||+.+++|..+++ .||..|+++++ +++|||+||............++++++||+.+++|+.+.. +|.+|
T Consensus 168 ~~~~dp~~~~W~~~~~----~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~--~~~~~ 241 (656)
T 1k3i_A 168 YTAPQPGLGRWGPTID----LPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV--TVTKH 241 (656)
T ss_dssp CCCCCTTSCEEEEEEE----CSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE--EECSC
T ss_pred cccCCCCCCeeeeecc----CCCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc--cCCCC
Confidence 5568888999998854 45566666766 8999999997543211011234689999999999999876 66777
Q ss_pred ceeE--EEE-ECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCC
Q 006473 181 SGHR--MVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSK 256 (643)
Q Consensus 181 s~h~--~~~-~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~ 256 (643)
..|+ +++ .+++||++||+.. .++++||+.+++|+.+..+ |.+|.+|+++++ +++|||+||...
T Consensus 242 ~~~~~~~~~~~~g~lyv~GG~~~--------~~v~~yd~~t~~W~~~~~~-----~~~R~~~s~~~~~dg~iyv~GG~~~ 308 (656)
T 1k3i_A 242 DMFCPGISMDGNGQIVVTGGNDA--------KKTSLYDSSSDSWIPGPDM-----QVARGYQSSATMSDGRVFTIGGSWS 308 (656)
T ss_dssp CCSSCEEEECTTSCEEEECSSST--------TCEEEEEGGGTEEEECCCC-----SSCCSSCEEEECTTSCEEEECCCCC
T ss_pred CCccccccCCCCCCEEEeCCCCC--------CceEEecCcCCceeECCCC-----CccccccceEEecCCeEEEEeCccc
Confidence 6654 443 5899999999753 3799999999999999877 889999999999 999999999533
Q ss_pred CCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCC------------------------------------------
Q 006473 257 EVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPP------------------------------------------ 294 (643)
Q Consensus 257 ~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P------------------------------------------ 294 (643)
. ...++++++||+.+++|+.+...+..|
T Consensus 309 ~----------~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~ 378 (656)
T 1k3i_A 309 G----------GVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSG 378 (656)
T ss_dssp S----------SSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECST
T ss_pred C----------CcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCC
Confidence 2 246778999999999999973211100
Q ss_pred -----------------CCceeeEEEE---ECCeEEEeccccccccCccccccccCC---cEEEEECCCCcEEEeEecCC
Q 006473 295 -----------------GPRAGFSMCV---HKKRALLFGGVVDMEMKGDVIMSLFLN---ELYGFQLDNHRWYPLELRKE 351 (643)
Q Consensus 295 -----------------~~R~g~s~~~---~~~~iyvfGG~~~~~~~~~~~~~~~~n---dl~~yd~~t~~W~~l~~~~~ 351 (643)
.++..+++++ ++++||||||...... ...++ .+++||+.+++|..+...
T Consensus 379 ~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~------~~~~~~~~~v~~yd~~~~~W~~~~~~-- 450 (656)
T 1k3i_A 379 SGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD------SDATTNAHIITLGEPGTSPNTVFASN-- 450 (656)
T ss_dssp TCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSS------SBCCCCEEEEECCSTTSCCEEEECTT--
T ss_pred cceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCC------CCcCCcceEEEcCCCCCCCeeEEccC--
Confidence 0122334443 4899999999753111 12234 789999999999877620
Q ss_pred CcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeecCceeeeecCCCC
Q 006473 352 KSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKP 431 (643)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (643)
T Consensus 451 -------------------------------------------------------------------------------- 450 (656)
T 1k3i_A 451 -------------------------------------------------------------------------------- 450 (656)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccCCCCCcCCccccccceeee-cCeEEEecceEeec--CeEEeecceeccccCCccceEEeccCCch
Q 006473 432 YESKKKSDMQKSLLPEIVKPCGRINSCMVVG-KDTLYVYGGMMEIN--DQEITLDDLYSLNLSKLDEWKCIIPASES 505 (643)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~-~~~Lyi~GG~~e~g--~~e~tl~D~~~ldl~k~d~w~~i~~~~~~ 505 (643)
.||.+|..|+++++ +++|||+||..... +....+++++.||+.+ +.|+.+.+....
T Consensus 451 -----------------~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t-~~W~~~~~~~~~ 509 (656)
T 1k3i_A 451 -----------------GLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ-DTFYKQNPNSIV 509 (656)
T ss_dssp -----------------CCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG-TEEEECCCCSSC
T ss_pred -----------------CCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCC-CceeecCCCCCc
Confidence 07999999999888 99999999974210 1123488999999988 999998876554
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0027 Score=62.93 Aligned_cols=160 Identities=16% Similarity=0.170 Sum_probs=108.3
Q ss_pred ceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCc
Q 006473 125 RSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLRE 204 (643)
Q Consensus 125 Rs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~ 204 (643)
-+-+.+...++.||+-.|.... +.+.++|+.+++=..-.. +|..-.+.+++..+++||+....
T Consensus 21 ~ftqGL~~~~~~LyestG~~g~---------S~v~~vD~~tgkv~~~~~--l~~~~fgeGi~~~~~~ly~ltw~------ 83 (243)
T 3mbr_X 21 AFTEGLFYLRGHLYESTGETGR---------SSVRKVDLETGRILQRAE--VPPPYFGAGIVAWRDRLIQLTWR------ 83 (243)
T ss_dssp CCEEEEEEETTEEEEEECCTTS---------CEEEEEETTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEESS------
T ss_pred cccccEEEECCEEEEECCCCCC---------ceEEEEECCCCCEEEEEe--CCCCcceeEEEEeCCEEEEEEee------
Confidence 3445666778999999997432 578899999997655433 46666788899999999998543
Q ss_pred eeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCee
Q 006473 205 VRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284 (643)
Q Consensus 205 ~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W 284 (643)
.+.+++||+.+.+- +... |.+..|.+++..++.||+.-| + +.++++|+.+.+-
T Consensus 84 ---~~~v~v~D~~tl~~--~~ti-----~~~~~Gwglt~dg~~L~vSdg-s----------------~~l~~iDp~t~~~ 136 (243)
T 3mbr_X 84 ---NHEGFVYDLATLTP--RARF-----RYPGEGWALTSDDSHLYMSDG-T----------------AVIRKLDPDTLQQ 136 (243)
T ss_dssp ---SSEEEEEETTTTEE--EEEE-----ECSSCCCEEEECSSCEEEECS-S----------------SEEEEECTTTCCE
T ss_pred ---CCEEEEEECCcCcE--EEEE-----eCCCCceEEeeCCCEEEEECC-C----------------CeEEEEeCCCCeE
Confidence 57899999988653 3333 223356677766888998866 3 2489999998765
Q ss_pred EEeccCCCCCCC-ceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 285 SKVKKIGMPPGP-RAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 285 ~~l~~~g~~P~~-R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
...-..+..+.+ +.---+...+++||+--- ..++|.+.|+.+.+
T Consensus 137 ~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw--------------~s~~I~vIDp~tG~ 181 (243)
T 3mbr_X 137 VGSIKVTAGGRPLDNLNELEWVNGELLANVW--------------LTSRIARIDPASGK 181 (243)
T ss_dssp EEEEECEETTEECCCEEEEEEETTEEEEEET--------------TTTEEEEECTTTCB
T ss_pred EEEEEEccCCcccccceeeEEeCCEEEEEEC--------------CCCeEEEEECCCCC
Confidence 443222222222 122345566888874432 24789999999875
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.022 Score=58.57 Aligned_cols=193 Identities=13% Similarity=0.069 Sum_probs=112.9
Q ss_pred eccEEEEECCCCcEEEecC---CCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEE-EeccCC
Q 006473 100 YGDLYRYDVEKQEWKVISS---PNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWE-QLNLKG 175 (643)
Q Consensus 100 ~ndv~~yd~~~~~W~~l~s---~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~-~~~~~g 175 (643)
.+.|..||+.++++..... ...+.....+.++..++++||.... .+.+.++|+.+.+-. .++.
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~-----------~~~v~viD~~t~~~~~~i~~-- 82 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNN-----------SHVIFAIDINTFKEVGRITG-- 82 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGG-----------GTEEEEEETTTCCEEEEEEC--
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcC-----------CCEEEEEECcccEEEEEcCC--
Confidence 3578999999998764210 0123444556677789999998752 257999999988763 3422
Q ss_pred CCCCCceeEEEE-ECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEE-eccCCCCCCCCCccceeEEEeCCEEEEEcC
Q 006473 176 CPSPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE-IKPRFGSMWPSPRSGFQFFVYQDEVFLYGG 253 (643)
Q Consensus 176 ~P~~Rs~h~~~~-~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~-v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG 253 (643)
...-+.+++ .+++||+.... .+.|+++|+.+.+-.. +... ..... ...-+.++..++.||+..-
T Consensus 83 ---~~~p~~i~~~~~g~lyv~~~~---------~~~v~~iD~~t~~~~~~i~~g-~~~~~-~~~p~~i~~~~~~lyv~~~ 148 (328)
T 3dsm_A 83 ---FTSPRYIHFLSDEKAYVTQIW---------DYRIFIINPKTYEITGYIECP-DMDME-SGSTEQMVQYGKYVYVNCW 148 (328)
T ss_dssp ---CSSEEEEEEEETTEEEEEEBS---------CSEEEEEETTTTEEEEEEECT-TCCTT-TCBCCCEEEETTEEEEEEC
T ss_pred ---CCCCcEEEEeCCCeEEEEECC---------CCeEEEEECCCCeEEEEEEcC-Ccccc-CCCcceEEEECCEEEEEcC
Confidence 122334455 67899987642 3679999999887543 2221 00000 0012234447889998852
Q ss_pred -CCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCC
Q 006473 254 -YSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLN 331 (643)
Q Consensus 254 -~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~n 331 (643)
.. +.+.++|+.+.+....-..+..| +.+++. ++++|+.......... ...-.+
T Consensus 149 ~~~----------------~~v~viD~~t~~~~~~i~~g~~p-----~~i~~~~dG~l~v~~~~~~~~~~----~~~~~~ 203 (328)
T 3dsm_A 149 SYQ----------------NRILKIDTETDKVVDELTIGIQP-----TSLVMDKYNKMWTITDGGYEGSP----YGYEAP 203 (328)
T ss_dssp TTC----------------CEEEEEETTTTEEEEEEECSSCB-----CCCEECTTSEEEEEBCCBCTTCS----SCBCCC
T ss_pred CCC----------------CEEEEEECCCCeEEEEEEcCCCc-----cceEEcCCCCEEEEECCCccCCc----cccCCc
Confidence 22 34889999988766544333222 233333 5787776532210000 000136
Q ss_pred cEEEEECCCCcEE
Q 006473 332 ELYGFQLDNHRWY 344 (643)
Q Consensus 332 dl~~yd~~t~~W~ 344 (643)
.|+++|+.+.+..
T Consensus 204 ~v~~id~~t~~v~ 216 (328)
T 3dsm_A 204 SLYRIDAETFTVE 216 (328)
T ss_dssp EEEEEETTTTEEE
T ss_pred eEEEEECCCCeEE
Confidence 7999999887643
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.041 Score=57.23 Aligned_cols=185 Identities=15% Similarity=0.163 Sum_probs=103.4
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCc--EEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDF 158 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~--W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv 158 (643)
++.||+... .+.|++||+.+++ |+.-.... ...+.+..++.||+..+ -..+
T Consensus 103 ~~~v~v~~~----------~g~l~a~d~~tG~~~W~~~~~~~-----~~~~p~~~~~~v~v~~~------------~g~l 155 (376)
T 3q7m_A 103 GGHVYIGSE----------KAQVYALNTSDGTVAWQTKVAGE-----ALSRPVVSDGLVLIHTS------------NGQL 155 (376)
T ss_dssp TTEEEEEET----------TSEEEEEETTTCCEEEEEECSSC-----CCSCCEEETTEEEEECT------------TSEE
T ss_pred CCEEEEEcC----------CCEEEEEECCCCCEEEEEeCCCc-----eEcCCEEECCEEEEEcC------------CCeE
Confidence 677777543 1479999998764 77543211 12223445788877543 1468
Q ss_pred EEEECCCCc--EEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc--eEEeccCCCCCCCC
Q 006473 159 WMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPS 234 (643)
Q Consensus 159 ~~yD~~t~~--W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~ 234 (643)
+.||+.+++ |+.-........+.....++.++.||+ |.. ...++.||+.+.+ |+.....+.+....
T Consensus 156 ~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~-g~~---------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~ 225 (376)
T 3q7m_A 156 QALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVV-GGD---------NGRVSAVLMEQGQMIWQQRISQATGSTEI 225 (376)
T ss_dssp EEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEE-CCT---------TTEEEEEETTTCCEEEEEECCC-------
T ss_pred EEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEE-EcC---------CCEEEEEECCCCcEEEEEecccCCCCccc
Confidence 999998875 876543211112222344555777776 321 2358899987654 76654331111000
Q ss_pred Cc---cceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCC--eeEEeccCCCCCCCceeeEEEEECCeE
Q 006473 235 PR---SGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGPRAGFSMCVHKKRA 309 (643)
Q Consensus 235 ~R---~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~g~~P~~R~g~s~~~~~~~i 309 (643)
.+ .....++.++.||+.+ ..+. +++||+.+. .|..... ...+.++.+++|
T Consensus 226 ~~~~~~~~~p~~~~~~v~~~~-~~g~----------------l~~~d~~tG~~~w~~~~~--------~~~~~~~~~~~l 280 (376)
T 3q7m_A 226 DRLSDVDTTPVVVNGVVFALA-YNGN----------------LTALDLRSGQIMWKRELG--------SVNDFIVDGNRI 280 (376)
T ss_dssp ----CCCCCCEEETTEEEEEC-TTSC----------------EEEEETTTCCEEEEECCC--------CEEEEEEETTEE
T ss_pred ccccccCCCcEEECCEEEEEe-cCcE----------------EEEEECCCCcEEeeccCC--------CCCCceEECCEE
Confidence 11 1223345578887754 3322 789998655 5765311 123466678888
Q ss_pred EEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 310 yvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
|+.... +.|++||+.+.+
T Consensus 281 ~~~~~~---------------g~l~~~d~~tG~ 298 (376)
T 3q7m_A 281 YLVDQN---------------DRVMALTIDGGV 298 (376)
T ss_dssp EEEETT---------------CCEEEEETTTCC
T ss_pred EEEcCC---------------CeEEEEECCCCc
Confidence 887531 349999998864
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.02 Score=59.57 Aligned_cols=193 Identities=11% Similarity=0.097 Sum_probs=106.7
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCC--cEEEecCCCCC-----CCceeeEEEEECCEEEEEeCccCCCCCCcce
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSP-----PPRSAHQAVSWKNYLYIFGGEFTSPNQERFH 153 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~~P-----~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~ 153 (643)
++.||+.... +.|++||+.++ .|+.-.....+ ........+..++.||+....
T Consensus 53 ~~~v~~~~~~----------g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~---------- 112 (376)
T 3q7m_A 53 DNVVYAADRA----------GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEK---------- 112 (376)
T ss_dssp TTEEEEECTT----------SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETT----------
T ss_pred CCEEEEEcCC----------CeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCC----------
Confidence 7888887641 37899999866 47754322111 122334445568899886531
Q ss_pred ecCeEEEEECCCCc--EEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc--eEEeccCCC
Q 006473 154 HYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFG 229 (643)
Q Consensus 154 ~~~dv~~yD~~t~~--W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~ 229 (643)
..++.||..+++ |+.-... . .....++.++.||+..+ ...|+.||+.+.+ |+.-...+.
T Consensus 113 --g~l~a~d~~tG~~~W~~~~~~----~-~~~~p~~~~~~v~v~~~----------~g~l~~~d~~tG~~~W~~~~~~~~ 175 (376)
T 3q7m_A 113 --AQVYALNTSDGTVAWQTKVAG----E-ALSRPVVSDGLVLIHTS----------NGQLQALNEADGAVKWTVNLDMPS 175 (376)
T ss_dssp --SEEEEEETTTCCEEEEEECSS----C-CCSCCEEETTEEEEECT----------TSEEEEEETTTCCEEEEEECCC--
T ss_pred --CEEEEEECCCCCEEEEEeCCC----c-eEcCCEEECCEEEEEcC----------CCeEEEEECCCCcEEEEEeCCCCc
Confidence 468999998774 7654321 1 12223456788777432 2469999988765 876543311
Q ss_pred CCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCC--eeEEeccCC--CCCCCc---eeeEE
Q 006473 230 SMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIG--MPPGPR---AGFSM 302 (643)
Q Consensus 230 ~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~g--~~P~~R---~g~s~ 302 (643)
...+...+.++.++.||+ |...+ .++.||+.+. .|+.-.... .....| ...+.
T Consensus 176 ---~~~~~~~~~~~~~~~v~~-g~~~g----------------~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p 235 (376)
T 3q7m_A 176 ---LSLRGESAPTTAFGAAVV-GGDNG----------------RVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTP 235 (376)
T ss_dssp ------CCCCCCEEETTEEEE-CCTTT----------------EEEEEETTTCCEEEEEECCC-----------CCCCCC
T ss_pred ---eeecCCCCcEEECCEEEE-EcCCC----------------EEEEEECCCCcEEEEEecccCCCCcccccccccCCCc
Confidence 111222334455777665 43332 3788997654 677643210 000001 12334
Q ss_pred EEECCeEEEeccccccccCccccccccCCcEEEEECCCC--cEEE
Q 006473 303 CVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH--RWYP 345 (643)
Q Consensus 303 ~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~--~W~~ 345 (643)
++.++.+|+.+. ...|++||+.+. .|..
T Consensus 236 ~~~~~~v~~~~~---------------~g~l~~~d~~tG~~~w~~ 265 (376)
T 3q7m_A 236 VVVNGVVFALAY---------------NGNLTALDLRSGQIMWKR 265 (376)
T ss_dssp EEETTEEEEECT---------------TSCEEEEETTTCCEEEEE
T ss_pred EEECCEEEEEec---------------CcEEEEEECCCCcEEeec
Confidence 556777777542 134899998876 4653
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.028 Score=55.59 Aligned_cols=190 Identities=17% Similarity=0.162 Sum_probs=118.0
Q ss_pred CceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCC
Q 006473 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQ 149 (643)
Q Consensus 70 ~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~ 149 (643)
+-..+.+. ++.||+-.|.+ |. +.|.++|+.+++-..-.. .|..-++.+++..+++||+....
T Consensus 22 ftqGL~~~---~~~LyestG~~--g~-----S~v~~vD~~tgkv~~~~~--l~~~~fgeGi~~~~~~ly~ltw~------ 83 (243)
T 3mbr_X 22 FTEGLFYL---RGHLYESTGET--GR-----SSVRKVDLETGRILQRAE--VPPPYFGAGIVAWRDRLIQLTWR------ 83 (243)
T ss_dssp CEEEEEEE---TTEEEEEECCT--TS-----CEEEEEETTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEESS------
T ss_pred ccccEEEE---CCEEEEECCCC--CC-----ceEEEEECCCCCEEEEEe--CCCCcceeEEEEeCCEEEEEEee------
Confidence 34467777 68999998852 22 478999999987654332 24455778888889999998653
Q ss_pred CcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceE-EeccCC
Q 006473 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ-EIKPRF 228 (643)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~-~v~~~~ 228 (643)
-+.+++||+.+.+-..- .|.+..+.+++.-+++||+.=| .+.++.+|+.+.+-. .+....
T Consensus 84 -----~~~v~v~D~~tl~~~~t----i~~~~~Gwglt~dg~~L~vSdg----------s~~l~~iDp~t~~~~~~I~V~~ 144 (243)
T 3mbr_X 84 -----NHEGFVYDLATLTPRAR----FRYPGEGWALTSDDSHLYMSDG----------TAVIRKLDPDTLQQVGSIKVTA 144 (243)
T ss_dssp -----SSEEEEEETTTTEEEEE----EECSSCCCEEEECSSCEEEECS----------SSEEEEECTTTCCEEEEEECEE
T ss_pred -----CCEEEEEECCcCcEEEE----EeCCCCceEEeeCCCEEEEECC----------CCeEEEEeCCCCeEEEEEEEcc
Confidence 36799999988764332 1223356777777888888644 367999999987643 232221
Q ss_pred CCCCCCCccc-eeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCC-CCC--------CCce
Q 006473 229 GSMWPSPRSG-FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG-MPP--------GPRA 298 (643)
Q Consensus 229 ~~~~P~~R~~-~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g-~~P--------~~R~ 298 (643)
. +.+... -.+...++.||+--.. .+.+.+.|+.+.+-...-.++ ..| ..-.
T Consensus 145 ~---g~~~~~lNeLe~~~G~lyanvw~----------------s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~v 205 (243)
T 3mbr_X 145 G---GRPLDNLNELEWVNGELLANVWL----------------TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDV 205 (243)
T ss_dssp T---TEECCCEEEEEEETTEEEEEETT----------------TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSC
T ss_pred C---CcccccceeeEEeCCEEEEEECC----------------CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCc
Confidence 0 222111 1233448888854322 246889999887544332211 111 1112
Q ss_pred eeEEEEE--CCeEEEeccc
Q 006473 299 GFSMCVH--KKRALLFGGV 315 (643)
Q Consensus 299 g~s~~~~--~~~iyvfGG~ 315 (643)
-.++|+. .+++||.|-.
T Consensus 206 lNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 206 LNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred eEEEEEcCCCCEEEEECCC
Confidence 3456665 5889988854
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.039 Score=56.69 Aligned_cols=206 Identities=13% Similarity=0.095 Sum_probs=118.9
Q ss_pred CCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcE-EEecCCCCCCCceeeEEEE-ECCEEEEEeCccCC
Q 006473 69 RSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW-KVISSPNSPPPRSAHQAVS-WKNYLYIFGGEFTS 146 (643)
Q Consensus 69 R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W-~~l~s~~~P~pRs~ha~~~-~~~~iyvfGG~~~~ 146 (643)
...+.+++. +++||+.... .+.+.++|+.+.+- ..++.. ..| +.++. -+++||+....
T Consensus 44 ~~~~~i~~~---~~~lyv~~~~---------~~~v~viD~~t~~~~~~i~~~--~~p---~~i~~~~~g~lyv~~~~--- 103 (328)
T 3dsm_A 44 DVAQSMVIR---DGIGWIVVNN---------SHVIFAIDINTFKEVGRITGF--TSP---RYIHFLSDEKAYVTQIW--- 103 (328)
T ss_dssp SCEEEEEEE---TTEEEEEEGG---------GTEEEEEETTTCCEEEEEECC--SSE---EEEEEEETTEEEEEEBS---
T ss_pred ccceEEEEE---CCEEEEEEcC---------CCEEEEEECcccEEEEEcCCC--CCC---cEEEEeCCCeEEEEECC---
Confidence 344566665 7889988761 35789999998876 345322 122 33334 57899998742
Q ss_pred CCCCcceecCeEEEEECCCCcEEE-eccCCCC-CCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEe
Q 006473 147 PNQERFHHYKDFWMLDLKTNQWEQ-LNLKGCP-SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (643)
Q Consensus 147 ~~~~~~~~~~dv~~yD~~t~~W~~-~~~~g~P-~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (643)
-+.++++|+.+.+-.. ++..... ....-+.+++.+++||+..- + ..+.|.++|+.+++....
T Consensus 104 --------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~--~------~~~~v~viD~~t~~~~~~ 167 (328)
T 3dsm_A 104 --------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCW--S------YQNRILKIDTETDKVVDE 167 (328)
T ss_dssp --------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEEC--T------TCCEEEEEETTTTEEEEE
T ss_pred --------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcC--C------CCCEEEEEECCCCeEEEE
Confidence 2578999999987543 3321100 00123445557899998742 0 135799999998876443
Q ss_pred ccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEE
Q 006473 225 KPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC 303 (643)
Q Consensus 225 ~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~ 303 (643)
-.. + ..| +.++.. ++++|+....... . ..-......++++|+.+.+....-.. |....-..++
T Consensus 168 i~~--g--~~p---~~i~~~~dG~l~v~~~~~~~--~----~~~~~~~~~v~~id~~t~~v~~~~~~---~~g~~p~~la 231 (328)
T 3dsm_A 168 LTI--G--IQP---TSLVMDKYNKMWTITDGGYE--G----SPYGYEAPSLYRIDAETFTVEKQFKF---KLGDWPSEVQ 231 (328)
T ss_dssp EEC--S--SCB---CCCEECTTSEEEEEBCCBCT--T----CSSCBCCCEEEEEETTTTEEEEEEEC---CTTCCCEEEE
T ss_pred EEc--C--CCc---cceEEcCCCCEEEEECCCcc--C----CccccCCceEEEEECCCCeEEEEEec---CCCCCceeEE
Confidence 222 1 122 223333 6788877543211 0 00000135799999998876643222 2222234555
Q ss_pred EE--CCeEEEeccccccccCccccccccCCcEEEEECCCCcE
Q 006473 304 VH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (643)
Q Consensus 304 ~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (643)
+. ++.+|+..+ .|++||+.+.+.
T Consensus 232 ~~~d~~~lyv~~~-----------------~v~~~d~~t~~~ 256 (328)
T 3dsm_A 232 LNGTRDTLYWINN-----------------DIWRMPVEADRV 256 (328)
T ss_dssp ECTTSCEEEEESS-----------------SEEEEETTCSSC
T ss_pred EecCCCEEEEEcc-----------------EEEEEECCCCce
Confidence 55 567777543 489999988764
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.028 Score=56.23 Aligned_cols=188 Identities=11% Similarity=0.067 Sum_probs=114.5
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCc
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~ 151 (643)
..+.+. ++.||+-.|.+ + .+.|.++|+.+++-..-.. +|..-++..++..+++||+....
T Consensus 46 qGL~~~---~~~LyestG~~--g-----~S~v~~vD~~Tgkv~~~~~--l~~~~FgeGit~~g~~ly~ltw~-------- 105 (262)
T 3nol_A 46 EGFFYR---NGYFYESTGLN--G-----RSSIRKVDIESGKTLQQIE--LGKRYFGEGISDWKDKIVGLTWK-------- 105 (262)
T ss_dssp EEEEEE---TTEEEEEEEET--T-----EEEEEEECTTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEESS--------
T ss_pred ceEEEE---CCEEEEECCCC--C-----CceEEEEECCCCcEEEEEe--cCCccceeEEEEeCCEEEEEEee--------
Confidence 555555 68999999952 2 2478899999987654332 23444667788889999999653
Q ss_pred ceecCeEEEEECCCCcEEE-eccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceE-EeccCCC
Q 006473 152 FHHYKDFWMLDLKTNQWEQ-LNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ-EIKPRFG 229 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~-~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~-~v~~~~~ 229 (643)
-+.+++||+.+.+-.. ++. +-.+.+++.-++.||+.-| .+.++.+|+.+.+-. .+.....
T Consensus 106 ---~~~v~v~D~~t~~~~~ti~~-----~~eG~glt~dg~~L~~SdG----------s~~i~~iDp~T~~v~~~I~V~~~ 167 (262)
T 3nol_A 106 ---NGLGFVWNIRNLRQVRSFNY-----DGEGWGLTHNDQYLIMSDG----------TPVLRFLDPESLTPVRTITVTAH 167 (262)
T ss_dssp ---SSEEEEEETTTCCEEEEEEC-----SSCCCCEEECSSCEEECCS----------SSEEEEECTTTCSEEEEEECEET
T ss_pred ---CCEEEEEECccCcEEEEEEC-----CCCceEEecCCCEEEEECC----------CCeEEEEcCCCCeEEEEEEeccC
Confidence 3679999998876433 322 2356667766778888644 367999999987643 3332210
Q ss_pred CCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCC-CC-------CCCceeeE
Q 006473 230 SMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG-MP-------PGPRAGFS 301 (643)
Q Consensus 230 ~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g-~~-------P~~R~g~s 301 (643)
+ .|..... .+...++.||+---. .+.+.+.|+.+.+-...-..+ .. |..-.-.+
T Consensus 168 g-~~~~~lN-ELe~~~G~lyan~w~----------------~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNG 229 (262)
T 3nol_A 168 G-EELPELN-ELEWVDGEIFANVWQ----------------TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNG 229 (262)
T ss_dssp T-EECCCEE-EEEEETTEEEEEETT----------------SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEE
T ss_pred C-ccccccc-eeEEECCEEEEEEcc----------------CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEE
Confidence 0 0111111 133448888863322 356899999887654432221 11 11112355
Q ss_pred EEEE--CCeEEEeccc
Q 006473 302 MCVH--KKRALLFGGV 315 (643)
Q Consensus 302 ~~~~--~~~iyvfGG~ 315 (643)
+|+. .+++||.|-.
T Consensus 230 IA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 230 IAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEETTTTEEEEEETT
T ss_pred EEEcCCCCEEEEECCC
Confidence 6665 5788888854
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.054 Score=54.41 Aligned_cols=202 Identities=12% Similarity=0.054 Sum_probs=119.0
Q ss_pred ceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCC
Q 006473 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQE 150 (643)
Q Consensus 71 ~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~ 150 (643)
-+.+.+.+ ++.||+..|.+ + .+.|.++|+.+++-..... .+....+..++..++.||+..-.
T Consensus 23 ~~Gl~~~~--dg~Lyvstg~~--~-----~s~v~~iD~~tg~v~~~i~--l~~~~fgeGi~~~g~~lyv~t~~------- 84 (266)
T 2iwa_A 23 TQGLVYAE--NDTLFESTGLY--G-----RSSVRQVALQTGKVENIHK--MDDSYFGEGLTLLNEKLYQVVWL------- 84 (266)
T ss_dssp EEEEEECS--TTEEEEEECST--T-----TCEEEEEETTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEETT-------
T ss_pred cccEEEeC--CCeEEEECCCC--C-----CCEEEEEECCCCCEEEEEe--cCCCcceEEEEEeCCEEEEEEec-------
Confidence 46777775 47999987731 1 2579999999987554322 12334566777789999999642
Q ss_pred cceecCeEEEEECCCCcEE-EeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCce-EEeccCC
Q 006473 151 RFHHYKDFWMLDLKTNQWE-QLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW-QEIKPRF 228 (643)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~-~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W-~~v~~~~ 228 (643)
-+.+++||+.+.+=. .++. + .-.+.+++.-++++|+.-| .+.++.+|+.+++- ..+....
T Consensus 85 ----~~~v~viD~~t~~v~~~i~~---g-~~~g~glt~Dg~~l~vs~g----------s~~l~viD~~t~~v~~~I~Vg~ 146 (266)
T 2iwa_A 85 ----KNIGFIYDRRTLSNIKNFTH---Q-MKDGWGLATDGKILYGSDG----------TSILYEIDPHTFKLIKKHNVKY 146 (266)
T ss_dssp ----CSEEEEEETTTTEEEEEEEC---C-SSSCCEEEECSSSEEEECS----------SSEEEEECTTTCCEEEEEECEE
T ss_pred ----CCEEEEEECCCCcEEEEEEC---C-CCCeEEEEECCCEEEEECC----------CCeEEEEECCCCcEEEEEEECC
Confidence 367999999876532 2322 1 1234445555778887643 46899999998763 2333210
Q ss_pred CCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccC-CC--------CCCCcee
Q 006473 229 GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI-GM--------PPGPRAG 299 (643)
Q Consensus 229 ~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~-g~--------~P~~R~g 299 (643)
. ..|..+.. .+...++.||+--.. .+.+.+.|+.+.+-...-.. +. .|..-.-
T Consensus 147 ~-~~p~~~~n-ele~~dg~lyvn~~~----------------~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~ 208 (266)
T 2iwa_A 147 N-GHRVIRLN-ELEYINGEVWANIWQ----------------TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVL 208 (266)
T ss_dssp T-TEECCCEE-EEEEETTEEEEEETT----------------SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCE
T ss_pred C-Ccccccce-eEEEECCEEEEecCC----------------CCeEEEEECCCCcEEEEEECCCcccccccccccccCce
Confidence 0 00111111 233337788765332 24699999988754332221 10 0111122
Q ss_pred eEEEEE--CCeEEEeccccccccCccccccccCCcEEEEECCC
Q 006473 300 FSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (643)
Q Consensus 300 ~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (643)
.++++. ++++||.|+. .+.|+..++..
T Consensus 209 nGIa~~~~~~~lfVTgk~--------------~~~v~~i~l~~ 237 (266)
T 2iwa_A 209 NGIAWDQENKRIFVTGKL--------------WPKLFEIKLHL 237 (266)
T ss_dssp EEEEEETTTTEEEEEETT--------------CSEEEEEEEEE
T ss_pred EEEEEcCCCCEEEEECCC--------------CCeEEEEEEec
Confidence 456665 5689999875 35677777654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0092 Score=59.73 Aligned_cols=157 Identities=11% Similarity=0.047 Sum_probs=101.1
Q ss_pred eEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceee
Q 006473 128 HQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRY 207 (643)
Q Consensus 128 ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~ 207 (643)
..+...++.||+..|... -+.+.++|+.+++=..-.. ++..-.+.+++..+++||+....
T Consensus 46 qGL~~~~~~LyestG~~g---------~S~v~~vD~~Tgkv~~~~~--l~~~~FgeGit~~g~~ly~ltw~--------- 105 (262)
T 3nol_A 46 EGFFYRNGYFYESTGLNG---------RSSIRKVDIESGKTLQQIE--LGKRYFGEGISDWKDKIVGLTWK--------- 105 (262)
T ss_dssp EEEEEETTEEEEEEEETT---------EEEEEEECTTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEESS---------
T ss_pred ceEEEECCEEEEECCCCC---------CceEEEEECCCCcEEEEEe--cCCccceeEEEEeCCEEEEEEee---------
Confidence 444455889999998643 2568899999987654433 45555677888999999998553
Q ss_pred eccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEe
Q 006473 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (643)
Q Consensus 208 ~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l 287 (643)
.+.+++||+.+.+-. ... +.+-.|.+++..++.||+.-| + +.++++|+.+.+-...
T Consensus 106 ~~~v~v~D~~t~~~~--~ti-----~~~~eG~glt~dg~~L~~SdG-s----------------~~i~~iDp~T~~v~~~ 161 (262)
T 3nol_A 106 NGLGFVWNIRNLRQV--RSF-----NYDGEGWGLTHNDQYLIMSDG-T----------------PVLRFLDPESLTPVRT 161 (262)
T ss_dssp SSEEEEEETTTCCEE--EEE-----ECSSCCCCEEECSSCEEECCS-S----------------SEEEEECTTTCSEEEE
T ss_pred CCEEEEEECccCcEE--EEE-----ECCCCceEEecCCCEEEEECC-C----------------CeEEEEcCCCCeEEEE
Confidence 478999999887632 222 222255666666778888765 2 3489999998765443
Q ss_pred ccCCCCCCCcee-eEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 288 KKIGMPPGPRAG-FSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 288 ~~~g~~P~~R~g-~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
-..+.-+.+... --+.+.+++||+--- ..+.|.+.|+.+.+
T Consensus 162 I~V~~~g~~~~~lNELe~~~G~lyan~w--------------~~~~I~vIDp~tG~ 203 (262)
T 3nol_A 162 ITVTAHGEELPELNELEWVDGEIFANVW--------------QTNKIVRIDPETGK 203 (262)
T ss_dssp EECEETTEECCCEEEEEEETTEEEEEET--------------TSSEEEEECTTTCB
T ss_pred EEeccCCccccccceeEEECCEEEEEEc--------------cCCeEEEEECCCCc
Confidence 221110111111 124556888875321 24789999999875
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.024 Score=56.77 Aligned_cols=184 Identities=15% Similarity=0.096 Sum_probs=111.9
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCc
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~ 151 (643)
..+.+. ++.||+-.|. ++.|.++|+.+++-..-. .|..-++..++..+++||+....
T Consensus 58 qGL~~~---~~~Ly~stG~---------~g~v~~iD~~Tgkv~~~~---l~~~~FgeGit~~g~~Ly~ltw~-------- 114 (268)
T 3nok_A 58 QGLVFH---QGHFFESTGH---------QGTLRQLSLESAQPVWME---RLGNIFAEGLASDGERLYQLTWT-------- 114 (268)
T ss_dssp EEEEEE---TTEEEEEETT---------TTEEEECCSSCSSCSEEE---ECTTCCEEEEEECSSCEEEEESS--------
T ss_pred ceEEEE---CCEEEEEcCC---------CCEEEEEECCCCcEEeEE---CCCCcceeEEEEeCCEEEEEEcc--------
Confidence 566665 7899999883 234889999988644322 23444667788889999998653
Q ss_pred ceecCeEEEEECCCCcEEE-eccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEE-eccCCC
Q 006473 152 FHHYKDFWMLDLKTNQWEQ-LNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE-IKPRFG 229 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~-~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~-v~~~~~ 229 (643)
-+.+++||+.+.+-.. ++. +-.+.+++.-++.||+.-| .+.++.+|+.+.+-.. +....
T Consensus 115 ---~~~v~V~D~~Tl~~~~ti~~-----~~eGwGLt~Dg~~L~vSdG----------s~~l~~iDp~T~~v~~~I~V~~- 175 (268)
T 3nok_A 115 ---EGLLFTWSGMPPQRERTTRY-----SGEGWGLCYWNGKLVRSDG----------GTMLTFHEPDGFALVGAVQVKL- 175 (268)
T ss_dssp ---SCEEEEEETTTTEEEEEEEC-----SSCCCCEEEETTEEEEECS----------SSEEEEECTTTCCEEEEEECEE-
T ss_pred ---CCEEEEEECCcCcEEEEEeC-----CCceeEEecCCCEEEEECC----------CCEEEEEcCCCCeEEEEEEeCC-
Confidence 3679999998876543 322 2346677777889998754 4679999999876432 32221
Q ss_pred CCCCCCccc-eeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCC---------CCCCCcee
Q 006473 230 SMWPSPRSG-FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG---------MPPGPRAG 299 (643)
Q Consensus 230 ~~~P~~R~~-~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g---------~~P~~R~g 299 (643)
.+.+... -.+...++.||+--- ..+.+.+.|+.+.+-...-..+ ..+..-.-
T Consensus 176 --~g~~v~~lNeLe~~dG~lyanvw----------------~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vl 237 (268)
T 3nok_A 176 --RGQPVELINELECANGVIYANIW----------------HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVL 237 (268)
T ss_dssp --TTEECCCEEEEEEETTEEEEEET----------------TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCE
T ss_pred --CCcccccccccEEeCCEEEEEEC----------------CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCce
Confidence 0111111 112334788775321 1356899999887543332211 01111122
Q ss_pred eEEEEE--CCeEEEeccc
Q 006473 300 FSMCVH--KKRALLFGGV 315 (643)
Q Consensus 300 ~s~~~~--~~~iyvfGG~ 315 (643)
.++|+. .++|||.|-.
T Consensus 238 NGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 238 NGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp EEEEECTTTCCEEEEETT
T ss_pred EEEEEcCCCCEEEEeCCC
Confidence 455555 5788888753
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.014 Score=60.74 Aligned_cols=185 Identities=12% Similarity=0.030 Sum_probs=103.8
Q ss_pred CEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEE
Q 006473 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFW 159 (643)
Q Consensus 82 ~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~ 159 (643)
..||+.|+. -+.|++||+.+++........ ..-++++.. +..||+.|+. -..+.
T Consensus 2 ~~l~vs~~~---------d~~v~v~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~-----------d~~i~ 57 (391)
T 1l0q_A 2 TFAYIANSE---------SDNISVIDVTSNKVTATIPVG----SNPMGAVISPDGTKVYVANAH-----------SNDVS 57 (391)
T ss_dssp EEEEEEETT---------TTEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEEGG-----------GTEEE
T ss_pred CEEEEEcCC---------CCEEEEEECCCCeEEEEeecC----CCcceEEECCCCCEEEEECCC-----------CCeEE
Confidence 457777762 247899999988655432221 112333332 4467777754 24688
Q ss_pred EEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCcc
Q 006473 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237 (643)
Q Consensus 160 ~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~ 237 (643)
+||+.+++....-. .+. .-++++.. +++||+.|.. ...+++||+.+.+....... .. .
T Consensus 58 v~d~~~~~~~~~~~--~~~--~v~~~~~spdg~~l~~~~~~---------~~~v~v~d~~~~~~~~~~~~-----~~--~ 117 (391)
T 1l0q_A 58 IIDTATNNVIATVP--AGS--SPQGVAVSPDGKQVYVTNMA---------SSTLSVIDTTSNTVAGTVKT-----GK--S 117 (391)
T ss_dssp EEETTTTEEEEEEE--CSS--SEEEEEECTTSSEEEEEETT---------TTEEEEEETTTTEEEEEEEC-----SS--S
T ss_pred EEECCCCeEEEEEE--CCC--CccceEECCCCCEEEEEECC---------CCEEEEEECCCCeEEEEEeC-----CC--C
Confidence 99998887654433 122 22233333 4456665432 25699999988765443322 11 1
Q ss_pred ceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE--CCeEEEec
Q 006473 238 GFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFG 313 (643)
Q Consensus 238 ~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~--~~~iyvfG 313 (643)
-.+++.. +..||+.++..+. +++||+.+.+....-..+. .-..+++. +..||+.+
T Consensus 118 ~~~~~~s~dg~~l~~~~~~~~~----------------v~~~d~~~~~~~~~~~~~~-----~~~~~~~~~dg~~l~~~~ 176 (391)
T 1l0q_A 118 PLGLALSPDGKKLYVTNNGDKT----------------VSVINTVTKAVINTVSVGR-----SPKGIAVTPDGTKVYVAN 176 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTE----------------EEEEETTTTEEEEEEECCS-----SEEEEEECTTSSEEEEEE
T ss_pred cceEEECCCCCEEEEEeCCCCE----------------EEEEECCCCcEEEEEecCC-----CcceEEECCCCCEEEEEe
Confidence 2333333 4467777765443 8899998877665543221 11344444 34566665
Q ss_pred cccccccCccccccccCCcEEEEECCCCcEEE
Q 006473 314 GVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (643)
Q Consensus 314 G~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (643)
+.. +.|++||+.+++...
T Consensus 177 ~~~--------------~~v~~~d~~~~~~~~ 194 (391)
T 1l0q_A 177 FDS--------------MSISVIDTVTNSVID 194 (391)
T ss_dssp TTT--------------TEEEEEETTTTEEEE
T ss_pred CCC--------------CEEEEEECCCCeEEE
Confidence 432 459999998875443
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.048 Score=53.21 Aligned_cols=215 Identities=10% Similarity=0.032 Sum_probs=110.4
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCC-CcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCC
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEK-QEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQ 149 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~-~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~ 149 (643)
.++...| +++++++++. ..+++||+.+ .+...+.... ....-.+++.. ++..+++++....
T Consensus 45 ~~~~~sp--dg~~l~~~~~----------~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~--- 107 (297)
T 2ojh_A 45 EAPNWSP--DGKYLLLNSE----------GLLYRLSLAGDPSPEKVDTGF--ATICNNDHGISPDGALYAISDKVEF--- 107 (297)
T ss_dssp EEEEECT--TSSEEEEEET----------TEEEEEESSSCCSCEECCCTT--CCCBCSCCEECTTSSEEEEEECTTT---
T ss_pred EeeEECC--CCCEEEEEcC----------CeEEEEeCCCCCCceEecccc--ccccccceEECCCCCEEEEEEeCCC---
Confidence 3455555 5666666651 3789999998 8777665322 11111222222 4555555543211
Q ss_pred CcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CC-EEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccC
Q 006473 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (643)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~-~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (643)
....+|.++..+.....+... .. .+.++.. ++ .|++.++... ...+|.+++.+.....+...
T Consensus 108 ----~~~~l~~~~~~~~~~~~~~~~---~~--~~~~~~spdg~~l~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~ 171 (297)
T 2ojh_A 108 ----GKSAIYLLPSTGGTPRLMTKN---LP--SYWHGWSPDGKSFTYCGIRDQ-------VFDIYSMDIDSGVETRLTHG 171 (297)
T ss_dssp ----SSCEEEEEETTCCCCEECCSS---SS--EEEEEECTTSSEEEEEEEETT-------EEEEEEEETTTCCEEECCCS
T ss_pred ----CcceEEEEECCCCceEEeecC---CC--ccceEECCCCCEEEEEECCCC-------ceEEEEEECCCCcceEcccC
Confidence 136799999988776555431 11 2222222 34 4554444321 24688888877766555433
Q ss_pred CCCCCCCCccceeEEEe-CC-EEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE
Q 006473 228 FGSMWPSPRSGFQFFVY-QD-EVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (643)
Q Consensus 228 ~~~~~P~~R~~~s~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~ 305 (643)
+... .++... ++ .|++.+...+. ..+|.+++.......+... ......+++.
T Consensus 172 -----~~~~--~~~~~s~dg~~l~~~~~~~~~--------------~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~s 225 (297)
T 2ojh_A 172 -----EGRN--DGPDYSPDGRWIYFNSSRTGQ--------------MQIWRVRVDGSSVERITDS-----AYGDWFPHPS 225 (297)
T ss_dssp -----SSCE--EEEEECTTSSEEEEEECTTSS--------------CEEEEEETTSSCEEECCCC-----SEEEEEEEEC
T ss_pred -----CCcc--ccceECCCCCEEEEEecCCCC--------------ccEEEECCCCCCcEEEecC-----CcccCCeEEC
Confidence 1111 222222 44 45544433322 4588888777766655431 1122223332
Q ss_pred -CCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 306 -~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
+++.+++++....... ........|++||+.+.....+..
T Consensus 226 ~dg~~l~~~~~~~~~~~---~~~~~~~~l~~~d~~~~~~~~~~~ 266 (297)
T 2ojh_A 226 PSGDKVVFVSYDADVFD---HPRDLDVRVQLMDMDGGNVETLFD 266 (297)
T ss_dssp TTSSEEEEEEEETTCCS---CCSSEEEEEEEEETTSCSCEEEEE
T ss_pred CCCCEEEEEEcCCCCCc---ccccCceEEEEEecCCCCceeeec
Confidence 5666666654321100 000012569999999887766553
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.17 Score=49.87 Aligned_cols=201 Identities=6% Similarity=-0.039 Sum_probs=108.6
Q ss_pred CceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCC
Q 006473 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPN 148 (643)
Q Consensus 70 ~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~ 148 (643)
..+++++.+ ++.||+.... .+.+++||+. .+...+..+. ....-++++.. ++.||+....
T Consensus 21 ~p~~i~~d~--~g~l~v~~~~---------~~~v~~~~~~-~~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~----- 81 (300)
T 2qc5_A 21 GPYGITSSE--DGKVWFTQHK---------ANKISSLDQS-GRIKEFEVPT--PDAKVMCLIVSSLGDIWFTENG----- 81 (300)
T ss_dssp CEEEEEECT--TSCEEEEETT---------TTEEEEECTT-SCEEEEECSS--TTCCEEEEEECTTSCEEEEETT-----
T ss_pred CcceeeECC--CCCEEEEcCC---------CCeEEEECCC-CceEEEECCC--CCCcceeEEECCCCCEEEEecC-----
Confidence 345555554 6788886531 2468899988 7777654321 11223344443 5778887532
Q ss_pred CCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccC
Q 006473 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (643)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (643)
...+++||+. +.+..+.... ....-+.+++. ++.||+.... ...+++||+. .+...+...
T Consensus 82 ------~~~v~~~d~~-g~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~---------~~~i~~~~~~-g~~~~~~~~ 142 (300)
T 2qc5_A 82 ------ANKIGKLSKK-GGFTEYPLPQ--PDSGPYGITEGLNGDIWFTQLN---------GDRIGKLTAD-GTIYEYDLP 142 (300)
T ss_dssp ------TTEEEEECTT-SCEEEEECSS--TTCCEEEEEECSTTCEEEEETT---------TTEEEEECTT-SCEEEEECS
T ss_pred ------CCeEEEECCC-CCeEEecCCC--CCCCCccceECCCCCEEEEccC---------CCeEEEECCC-CCEEEccCC
Confidence 2468899988 7776554311 12223344443 5778875421 2468889887 665544322
Q ss_pred CCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-
Q 006473 228 FGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH- 305 (643)
Q Consensus 228 ~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~- 305 (643)
. ....-++++.. ++.||+...... .+++|++ +.++..+.... ....-.++++.
T Consensus 143 ~-----~~~~~~~i~~d~~g~l~v~~~~~~----------------~i~~~~~-~g~~~~~~~~~---~~~~~~~i~~d~ 197 (300)
T 2qc5_A 143 N-----KGSYPAFITLGSDNALWFTENQNN----------------SIGRITN-TGKLEEYPLPT---NAAAPVGITSGN 197 (300)
T ss_dssp S-----TTCCEEEEEECTTSSEEEEETTTT----------------EEEEECT-TCCEEEEECSS---TTCCEEEEEECT
T ss_pred C-----CCCCceeEEECCCCCEEEEecCCC----------------eEEEECC-CCcEEEeeCCC---CCCCcceEEECC
Confidence 0 11122333333 566777653222 3788988 56666543211 11222344444
Q ss_pred CCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 306 ~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
++.||+.... .+.|++||+ +..+..+..
T Consensus 198 ~g~l~v~~~~--------------~~~i~~~~~-~g~~~~~~~ 225 (300)
T 2qc5_A 198 DGALWFVEIM--------------GNKIGRITT-TGEISEYDI 225 (300)
T ss_dssp TSSEEEEETT--------------TTEEEEECT-TCCEEEEEC
T ss_pred CCCEEEEccC--------------CCEEEEEcC-CCcEEEEEC
Confidence 5677775422 235889988 566665543
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.069 Score=53.61 Aligned_cols=158 Identities=13% Similarity=0.106 Sum_probs=99.1
Q ss_pred eEEEEEC-CEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCcee
Q 006473 128 HQAVSWK-NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVR 206 (643)
Q Consensus 128 ha~~~~~-~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~ 206 (643)
|.++..+ +.||+..|... -+.+.++|+.+++=..--+ ++....+++++..+++||+..-.
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~---------~s~v~~iD~~tg~v~~~i~--l~~~~fgeGi~~~g~~lyv~t~~-------- 84 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG---------RSSVRQVALQTGKVENIHK--MDDSYFGEGLTLLNEKLYQVVWL-------- 84 (266)
T ss_dssp EEEEECSTTEEEEEECSTT---------TCEEEEEETTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEETT--------
T ss_pred ccEEEeCCCeEEEECCCCC---------CCEEEEEECCCCCEEEEEe--cCCCcceEEEEEeCCEEEEEEec--------
Confidence 5666555 89999887422 2579999999988554333 34444667788889999998542
Q ss_pred eeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEE
Q 006473 207 YYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (643)
Q Consensus 207 ~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (643)
.+.+++||+.+.+ .+...+.+ . -.+.+++.-++.+|+.-| + +.++++|+.+.+-..
T Consensus 85 -~~~v~viD~~t~~--v~~~i~~g-~---~~g~glt~Dg~~l~vs~g-s----------------~~l~viD~~t~~v~~ 140 (266)
T 2iwa_A 85 -KNIGFIYDRRTLS--NIKNFTHQ-M---KDGWGLATDGKILYGSDG-T----------------SILYEIDPHTFKLIK 140 (266)
T ss_dssp -CSEEEEEETTTTE--EEEEEECC-S---SSCCEEEECSSSEEEECS-S----------------SEEEEECTTTCCEEE
T ss_pred -CCEEEEEECCCCc--EEEEEECC-C---CCeEEEEECCCEEEEECC-C----------------CeEEEEECCCCcEEE
Confidence 4689999998764 33333211 1 234445555778888764 2 348999998876444
Q ss_pred eccCCCCCCCc-eeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 287 VKKIGMPPGPR-AGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 287 l~~~g~~P~~R-~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
.-..+..+.+. .-..+.+.++++|+--. ..+.|.+.|+.+++
T Consensus 141 ~I~Vg~~~~p~~~~nele~~dg~lyvn~~--------------~~~~V~vID~~tg~ 183 (266)
T 2iwa_A 141 KHNVKYNGHRVIRLNELEYINGEVWANIW--------------QTDCIARISAKDGT 183 (266)
T ss_dssp EEECEETTEECCCEEEEEEETTEEEEEET--------------TSSEEEEEETTTCC
T ss_pred EEEECCCCcccccceeEEEECCEEEEecC--------------CCCeEEEEECCCCc
Confidence 32222211111 12244455888775532 14689999999875
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.056 Score=55.96 Aligned_cols=195 Identities=13% Similarity=0.048 Sum_probs=105.9
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCC
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~ 149 (643)
.++.+.|. +..||+.|+. -+.+++||+.+++........ . .-.+++.. +..||+.|..
T Consensus 35 ~~~~~s~d-g~~l~~~~~~---------d~~i~v~d~~~~~~~~~~~~~--~--~v~~~~~spdg~~l~~~~~~------ 94 (391)
T 1l0q_A 35 MGAVISPD-GTKVYVANAH---------SNDVSIIDTATNNVIATVPAG--S--SPQGVAVSPDGKQVYVTNMA------ 94 (391)
T ss_dssp EEEEECTT-SSEEEEEEGG---------GTEEEEEETTTTEEEEEEECS--S--SEEEEEECTTSSEEEEEETT------
T ss_pred ceEEECCC-CCEEEEECCC---------CCeEEEEECCCCeEEEEEECC--C--CccceEECCCCCEEEEEECC------
Confidence 45555552 3456676652 247899999888765433221 1 22233332 4567776542
Q ss_pred CcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccC
Q 006473 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (643)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (643)
-..+++||+.+++...... ....-+.++.. ++.||+.++. ...+++||+.+.+.......
T Consensus 95 -----~~~v~v~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~---------~~~v~~~d~~~~~~~~~~~~ 156 (391)
T 1l0q_A 95 -----SSTLSVIDTTSNTVAGTVK----TGKSPLGLALSPDGKKLYVTNNG---------DKTVSVINTVTKAVINTVSV 156 (391)
T ss_dssp -----TTEEEEEETTTTEEEEEEE----CSSSEEEEEECTTSSEEEEEETT---------TTEEEEEETTTTEEEEEEEC
T ss_pred -----CCEEEEEECCCCeEEEEEe----CCCCcceEEECCCCCEEEEEeCC---------CCEEEEEECCCCcEEEEEec
Confidence 1468999999887654432 11122333333 3467776643 35789999988765544332
Q ss_pred CCCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE
Q 006473 228 FGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (643)
Q Consensus 228 ~~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~ 305 (643)
.. .-..++.. +..||+.++..+. +++||+.+.+....... ...-.++++.
T Consensus 157 -----~~--~~~~~~~~~dg~~l~~~~~~~~~----------------v~~~d~~~~~~~~~~~~-----~~~~~~~~~~ 208 (391)
T 1l0q_A 157 -----GR--SPKGIAVTPDGTKVYVANFDSMS----------------ISVIDTVTNSVIDTVKV-----EAAPSGIAVN 208 (391)
T ss_dssp -----CS--SEEEEEECTTSSEEEEEETTTTE----------------EEEEETTTTEEEEEEEC-----SSEEEEEEEC
T ss_pred -----CC--CcceEEECCCCCEEEEEeCCCCE----------------EEEEECCCCeEEEEEec-----CCCccceEEC
Confidence 11 11233333 4567777665433 88999988765544321 1122333443
Q ss_pred -CCeEEEeccccccccCccccccccCCcEEEEECCCCcE
Q 006473 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (643)
Q Consensus 306 -~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (643)
+++.+++++... ..+.|++||+.+.+-
T Consensus 209 ~~g~~l~~~~~~~-----------~~~~v~~~d~~~~~~ 236 (391)
T 1l0q_A 209 PEGTKAYVTNVDK-----------YFNTVSMIDTGTNKI 236 (391)
T ss_dssp TTSSEEEEEEECS-----------SCCEEEEEETTTTEE
T ss_pred CCCCEEEEEecCc-----------CCCcEEEEECCCCeE
Confidence 444444444210 135699999987643
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.056 Score=57.53 Aligned_cols=206 Identities=11% Similarity=0.006 Sum_probs=113.1
Q ss_pred EEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CC-EEEEEeCccCCCCCCc
Q 006473 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KN-YLYIFGGEFTSPNQER 151 (643)
Q Consensus 74 ~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~-~iyvfGG~~~~~~~~~ 151 (643)
+...| +++.+++++. ++. ...++++|+.+++...+.... ....+.+.. ++ .|++.+....
T Consensus 184 ~~~Sp--dg~~la~~s~--~~~----~~~i~~~d~~tg~~~~l~~~~----~~~~~~~~spdg~~la~~~~~~g------ 245 (415)
T 2hqs_A 184 PAWSP--DGSKLAYVTF--ESG----RSALVIQTLANGAVRQVASFP----RHNGAPAFSPDGSKLAFALSKTG------ 245 (415)
T ss_dssp EEECT--TSSEEEEEEC--TTS----SCEEEEEETTTCCEEEEECCS----SCEEEEEECTTSSEEEEEECTTS------
T ss_pred eEEcC--CCCEEEEEEe--cCC----CcEEEEEECCCCcEEEeecCC----CcccCEEEcCCCCEEEEEEecCC------
Confidence 44444 4555666652 111 147999999999887765421 122222222 34 4554544321
Q ss_pred ceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCC
Q 006473 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (643)
...+|++|+.+.....+.. .+ .......+ +++.+++++..+. ...+|++|+.+..-..+...
T Consensus 246 ---~~~i~~~d~~~~~~~~l~~--~~---~~~~~~~~spdg~~l~~~s~~~g------~~~i~~~d~~~~~~~~l~~~-- 309 (415)
T 2hqs_A 246 ---SLNLYVMDLASGQIRQVTD--GR---SNNTEPTWFPDSQNLAFTSDQAG------RPQVYKVNINGGAPQRITWE-- 309 (415)
T ss_dssp ---SCEEEEEETTTCCEEECCC--CS---SCEEEEEECTTSSEEEEEECTTS------SCEEEEEETTSSCCEECCCS--
T ss_pred ---CceEEEEECCCCCEEeCcC--CC---CcccceEECCCCCEEEEEECCCC------CcEEEEEECCCCCEEEEecC--
Confidence 2579999999988766543 11 11223333 4555555543211 34799999988765444322
Q ss_pred CCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CC
Q 006473 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KK 307 (643)
Q Consensus 230 ~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~ 307 (643)
.....+++.. ++..+++++.... ...++++|+.+.....+... . ...++++. ++
T Consensus 310 -----~~~~~~~~~spdG~~l~~~~~~~g-------------~~~i~~~d~~~~~~~~l~~~-----~-~~~~~~~spdg 365 (415)
T 2hqs_A 310 -----GSQNQDADVSSDGKFMVMVSSNGG-------------QQHIAKQDLATGGVQVLSST-----F-LDETPSLAPNG 365 (415)
T ss_dssp -----SSEEEEEEECTTSSEEEEEEECSS-------------CEEEEEEETTTCCEEECCCS-----S-SCEEEEECTTS
T ss_pred -----CCcccCeEECCCCCEEEEEECcCC-------------ceEEEEEECCCCCEEEecCC-----C-CcCCeEEcCCC
Confidence 1122223322 4554445443211 24689999998887665431 1 22233333 67
Q ss_pred eEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 308 ~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
+.+++++.... ...||++|+.+.....|..
T Consensus 366 ~~l~~~s~~~~-----------~~~l~~~d~~g~~~~~l~~ 395 (415)
T 2hqs_A 366 TMVIYSSSQGM-----------GSVLNLVSTDGRFKARLPA 395 (415)
T ss_dssp SEEEEEEEETT-----------EEEEEEEETTSCCEEECCC
T ss_pred CEEEEEEcCCC-----------ccEEEEEECCCCcEEEeeC
Confidence 77777765320 2369999999887777655
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.49 Score=47.65 Aligned_cols=208 Identities=14% Similarity=0.089 Sum_probs=105.0
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCC
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~ 149 (643)
+.+++.|. ++.||+.... +....-.+.++++|+.+.+....... ....+.++.. ++.+|+.++.
T Consensus 44 ~~~~~s~d-g~~l~~~~~~---~~~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~v~~~~------ 109 (353)
T 3vgz_A 44 YEMAYSQQ-ENALWLATSQ---SRKLDKGGVVYRLDPVTLEVTQAIHN----DLKPFGATINNTTQTLWFGNTV------ 109 (353)
T ss_dssp EEEEEETT-TTEEEEEECC---CTTTEESEEEEEECTTTCCEEEEEEE----SSCCCSEEEETTTTEEEEEETT------
T ss_pred cceEECCC-CCEEEEEcCC---CcCCCCCccEEEEcCCCCeEEEEEec----CCCcceEEECCCCCEEEEEecC------
Confidence 45556652 4577766532 11111245799999998865433211 1112233333 4568887653
Q ss_pred CcceecCeEEEEECCCCcEEE-eccCCCCC-----CCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCce
Q 006473 150 ERFHHYKDFWMLDLKTNQWEQ-LNLKGCPS-----PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (643)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~-~~~~g~P~-----~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W 221 (643)
-+.+++||+.+.+-.. +....... +..-+.+++. +++||+.+... ...+++||+.+.+-
T Consensus 110 -----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--------~~~i~~~d~~~~~~ 176 (353)
T 3vgz_A 110 -----NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK--------ESVIWVVDGGNIKL 176 (353)
T ss_dssp -----TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS--------SCEEEEEETTTTEE
T ss_pred -----CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC--------CceEEEEcCCCCce
Confidence 2468999998876433 22211111 1112333443 45677765321 24699999987654
Q ss_pred EEeccCCCCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCcee
Q 006473 222 QEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299 (643)
Q Consensus 222 ~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g 299 (643)
...-.. ....-++++.. +..||+... . ..+++||+.+.+-......+........
T Consensus 177 ~~~~~~------~~~~~~~~~~s~dg~~l~~~~~-~----------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 233 (353)
T 3vgz_A 177 KTAIQN------TGKMSTGLALDSEGKRLYTTNA-D----------------GELITIDTADNKILSRKKLLDDGKEHFF 233 (353)
T ss_dssp EEEECC------CCTTCCCCEEETTTTEEEEECT-T----------------SEEEEEETTTTEEEEEEECCCSSSCCCE
T ss_pred EEEecC------CCCccceEEECCCCCEEEEEcC-C----------------CeEEEEECCCCeEEEEEEcCCCCCCccc
Confidence 332221 11111223333 556666543 2 2477899887754433322111112222
Q ss_pred eEEEEE--CCeEEEeccccccccCccccccccCCcEEEEECCCCcE
Q 006473 300 FSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (643)
Q Consensus 300 ~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (643)
.++++. ++.+|+.... .+.|++||+.+.+.
T Consensus 234 ~~~~~s~dg~~l~~~~~~--------------~~~v~~~d~~~~~~ 265 (353)
T 3vgz_A 234 INISLDTARQRAFITDSK--------------AAEVLVVDTRNGNI 265 (353)
T ss_dssp EEEEEETTTTEEEEEESS--------------SSEEEEEETTTCCE
T ss_pred ceEEECCCCCEEEEEeCC--------------CCEEEEEECCCCcE
Confidence 344554 4456655422 25699999987654
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.14 Score=50.49 Aligned_cols=194 Identities=7% Similarity=-0.012 Sum_probs=100.5
Q ss_pred ceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCC
Q 006473 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQ 149 (643)
Q Consensus 71 ~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~ 149 (643)
-+.+++.+ ++.||+.... .+.+++||+ ++....+..+. ....-+.++.. ++.||+....
T Consensus 101 ~~~i~~~~--~g~l~v~~~~---------~~~i~~~d~-~g~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~------ 160 (299)
T 2z2n_A 101 PYGITEGP--NGDIWFTEMN---------GNRIGRITD-DGKIREYELPN--KGSYPSFITLGSDNALWFTENQ------ 160 (299)
T ss_dssp EEEEEECT--TSCEEEEETT---------TTEEEEECT-TCCEEEEECSS--TTCCEEEEEECTTSCEEEEETT------
T ss_pred ceeeEECC--CCCEEEEecC---------CceEEEECC-CCCEEEecCCC--CCCCCceEEEcCCCCEEEEeCC------
Confidence 34455554 5677775431 136888998 66666553221 11223344444 5688886521
Q ss_pred CcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCC
Q 006473 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (643)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (643)
.+.+++||+ +.+...+.... . ...-+++++. ++.||+.... .+.+++||+ +..+..+....
T Consensus 161 -----~~~i~~~~~-~g~~~~~~~~~-~-~~~~~~i~~~~~g~l~v~~~~---------~~~i~~~~~-~g~~~~~~~~~ 222 (299)
T 2z2n_A 161 -----NNAIGRITE-SGDITEFKIPT-P-ASGPVGITKGNDDALWFVEII---------GNKIGRITT-SGEITEFKIPT 222 (299)
T ss_dssp -----TTEEEEECT-TCCEEEEECSS-T-TCCEEEEEECTTSSEEEEETT---------TTEEEEECT-TCCEEEEECSS
T ss_pred -----CCEEEEEcC-CCcEEEeeCCC-C-CCcceeEEECCCCCEEEEccC---------CceEEEECC-CCcEEEEECCC
Confidence 246899999 77776653211 1 1112233333 4678775421 356889999 77776553221
Q ss_pred CCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECC
Q 006473 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKK 307 (643)
Q Consensus 229 ~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~ 307 (643)
+ ...-++++.. ++.||+...... .+++||+ +.+...+...+. ...-.++++.++
T Consensus 223 ----~-~~~~~~i~~~~~g~l~v~~~~~~----------------~i~~~d~-~g~~~~~~~~~~---~~~~~~i~~~~g 277 (299)
T 2z2n_A 223 ----P-NARPHAITAGAGIDLWFTEWGAN----------------KIGRLTS-NNIIEEYPIQIK---SAEPHGICFDGE 277 (299)
T ss_dssp ----T-TCCEEEEEECSTTCEEEEETTTT----------------EEEEEET-TTEEEEEECSSS---SCCEEEEEECSS
T ss_pred ----C-CCCceeEEECCCCCEEEeccCCc----------------eEEEECC-CCceEEEeCCCC---CCccceEEecCC
Confidence 1 1111233333 567887653322 3788898 445444432111 112234444567
Q ss_pred eEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 308 ~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
.||+... .+.|++|++.+++
T Consensus 278 ~l~v~~~---------------~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 278 TIWFAME---------------CDKIGKLTLIKDN 297 (299)
T ss_dssp CEEEEET---------------TTEEEEEEEC---
T ss_pred CEEEEec---------------CCcEEEEEcCccc
Confidence 7777643 1348888887653
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.032 Score=55.89 Aligned_cols=155 Identities=7% Similarity=0.001 Sum_probs=100.2
Q ss_pred eeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCcee
Q 006473 127 AHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVR 206 (643)
Q Consensus 127 ~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~ 206 (643)
...+...++.||+..|.. ..+.++|+.+++=..-. ++..-.+.+++..+++||+....
T Consensus 57 tqGL~~~~~~Ly~stG~~-----------g~v~~iD~~Tgkv~~~~---l~~~~FgeGit~~g~~Ly~ltw~-------- 114 (268)
T 3nok_A 57 TQGLVFHQGHFFESTGHQ-----------GTLRQLSLESAQPVWME---RLGNIFAEGLASDGERLYQLTWT-------- 114 (268)
T ss_dssp EEEEEEETTEEEEEETTT-----------TEEEECCSSCSSCSEEE---ECTTCCEEEEEECSSCEEEEESS--------
T ss_pred cceEEEECCEEEEEcCCC-----------CEEEEEECCCCcEEeEE---CCCCcceeEEEEeCCEEEEEEcc--------
Confidence 355566689999999963 34889999988643221 23445667788889999998543
Q ss_pred eeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEE
Q 006473 207 YYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (643)
Q Consensus 207 ~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (643)
.+.+++||+.+.+-. ... +.+-.+.+++..+..||+.-| + +.++++|+.+.+-..
T Consensus 115 -~~~v~V~D~~Tl~~~--~ti-----~~~~eGwGLt~Dg~~L~vSdG-s----------------~~l~~iDp~T~~v~~ 169 (268)
T 3nok_A 115 -EGLLFTWSGMPPQRE--RTT-----RYSGEGWGLCYWNGKLVRSDG-G----------------TMLTFHEPDGFALVG 169 (268)
T ss_dssp -SCEEEEEETTTTEEE--EEE-----ECSSCCCCEEEETTEEEEECS-S----------------SEEEEECTTTCCEEE
T ss_pred -CCEEEEEECCcCcEE--EEE-----eCCCceeEEecCCCEEEEECC-C----------------CEEEEEcCCCCeEEE
Confidence 468999999887533 222 122345667777889999876 3 248999999876554
Q ss_pred eccCCCCCCCc-eeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 287 VKKIGMPPGPR-AGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 287 l~~~g~~P~~R-~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
.-..+.-|.+. .---+.+.+++||+-- . ..+.|.+.|+.+.+
T Consensus 170 ~I~V~~~g~~v~~lNeLe~~dG~lyanv-w-------------~s~~I~vIDp~TG~ 212 (268)
T 3nok_A 170 AVQVKLRGQPVELINELECANGVIYANI-W-------------HSSDVLEIDPATGT 212 (268)
T ss_dssp EEECEETTEECCCEEEEEEETTEEEEEE-T-------------TCSEEEEECTTTCB
T ss_pred EEEeCCCCcccccccccEEeCCEEEEEE-C-------------CCCeEEEEeCCCCc
Confidence 32221112221 1123455688877422 1 24789999999875
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.39 Score=47.12 Aligned_cols=199 Identities=6% Similarity=-0.035 Sum_probs=109.1
Q ss_pred ceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCC
Q 006473 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQ 149 (643)
Q Consensus 71 ~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~ 149 (643)
-+++++.+ ++.||+... . .+.+++||+. ..+..+..+. ....-++++.. ++.||+....
T Consensus 17 ~~~i~~d~--~g~l~v~~~----~-----~~~v~~~d~~-~~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~------ 76 (299)
T 2z2n_A 17 PYGITVSD--KGKVWITQH----K-----ANMISCINLD-GKITEYPLPT--PDAKVMCLTISSDGEVWFTENA------ 76 (299)
T ss_dssp EEEEEECT--TSCEEEEET----T-----TTEEEEECTT-CCEEEEECSS--TTCCEEEEEECTTSCEEEEETT------
T ss_pred ccceEECC--CCCEEEEec----C-----CCcEEEEcCC-CCeEEecCCc--ccCceeeEEECCCCCEEEeCCC------
Confidence 35555554 677887543 1 1468999998 7777664321 11223334433 5778887542
Q ss_pred CcceecCeEEEEECCCCcEEEeccCCCC-CCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccC
Q 006473 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCP-SPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (643)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P-~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (643)
...+++||+. ..+..+.. | ....-++++.. ++.||+.... ...+++||+ +.....+...
T Consensus 77 -----~~~i~~~~~~-g~~~~~~~---~~~~~~~~~i~~~~~g~l~v~~~~---------~~~i~~~d~-~g~~~~~~~~ 137 (299)
T 2z2n_A 77 -----ANKIGRITKK-GIIKEYTL---PNPDSAPYGITEGPNGDIWFTEMN---------GNRIGRITD-DGKIREYELP 137 (299)
T ss_dssp -----TTEEEEECTT-SCEEEEEC---SSTTCCEEEEEECTTSCEEEEETT---------TTEEEEECT-TCCEEEEECS
T ss_pred -----CCeEEEECCC-CcEEEEeC---CCcCCCceeeEECCCCCEEEEecC---------CceEEEECC-CCCEEEecCC
Confidence 1458889886 55555442 2 12223344444 5678876432 246888998 6666554332
Q ss_pred CCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-
Q 006473 228 FGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH- 305 (643)
Q Consensus 228 ~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~- 305 (643)
. ....-.+++.. ++.||+..... ..+++||+ +.+...+.... ....-.++++.
T Consensus 138 ~-----~~~~~~~i~~~~~g~l~v~~~~~----------------~~i~~~~~-~g~~~~~~~~~---~~~~~~~i~~~~ 192 (299)
T 2z2n_A 138 N-----KGSYPSFITLGSDNALWFTENQN----------------NAIGRITE-SGDITEFKIPT---PASGPVGITKGN 192 (299)
T ss_dssp S-----TTCCEEEEEECTTSCEEEEETTT----------------TEEEEECT-TCCEEEEECSS---TTCCEEEEEECT
T ss_pred C-----CCCCCceEEEcCCCCEEEEeCCC----------------CEEEEEcC-CCcEEEeeCCC---CCCcceeEEECC
Confidence 1 11122334444 66788764322 23888998 66666543211 11122344444
Q ss_pred CCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 306 ~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
++.+|+.... .+.|++||+ +.++..+..
T Consensus 193 ~g~l~v~~~~--------------~~~i~~~~~-~g~~~~~~~ 220 (299)
T 2z2n_A 193 DDALWFVEII--------------GNKIGRITT-SGEITEFKI 220 (299)
T ss_dssp TSSEEEEETT--------------TTEEEEECT-TCCEEEEEC
T ss_pred CCCEEEEccC--------------CceEEEECC-CCcEEEEEC
Confidence 4677776432 245899999 777766543
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=96.67 E-value=0.19 Score=50.27 Aligned_cols=194 Identities=12% Similarity=0.067 Sum_probs=97.1
Q ss_pred EEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCc
Q 006473 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 74 ~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~ 151 (643)
+...| ++.+++.|+. -+.+.+||+.+.+-...-... ......+.+ ++.+++.|+..
T Consensus 71 ~~~~~--~~~~l~s~~~---------d~~i~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~~d------- 128 (312)
T 4ery_A 71 VAWSS--DSNLLVSASD---------DKTLKIWDVSSGKCLKTLKGH----SNYVFCCNFNPQSNLIVSGSFD------- 128 (312)
T ss_dssp EEECT--TSSEEEEEET---------TSEEEEEETTTCCEEEEEECC----SSCEEEEEECSSSSEEEEEETT-------
T ss_pred EEEcC--CCCEEEEECC---------CCEEEEEECCCCcEEEEEcCC----CCCEEEEEEcCCCCEEEEEeCC-------
Confidence 34444 4566666662 236788888877543221111 111122222 45566677643
Q ss_pred ceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCC
Q 006473 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (643)
..+.+||+.+.+-...-. .....-..+.+ ++.+++.|+.+ ..+.+||+.+.+....-...
T Consensus 129 ----~~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~~wd~~~~~~~~~~~~~- 190 (312)
T 4ery_A 129 ----ESVRIWDVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYD---------GLCRIWDTASGQCLKTLIDD- 190 (312)
T ss_dssp ----SCEEEEETTTCCEEEEEC----CCSSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTCCEEEEECCS-
T ss_pred ----CcEEEEECCCCEEEEEec----CCCCcEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCceeeEEecc-
Confidence 357889988765432211 11111222333 45666777642 45888998876543222110
Q ss_pred CCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCce-eeEEEEECC
Q 006473 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRA-GFSMCVHKK 307 (643)
Q Consensus 230 ~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~-g~s~~~~~~ 307 (643)
..+.. ..+... ++..++.|+.++. +.+||+.+..-...-. +....... .......++
T Consensus 191 ---~~~~~-~~~~~~~~~~~l~~~~~d~~----------------i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 249 (312)
T 4ery_A 191 ---DNPPV-SFVKFSPNGKYILAATLDNT----------------LKLWDYSKGKCLKTYT-GHKNEKYCIFANFSVTGG 249 (312)
T ss_dssp ---SCCCE-EEEEECTTSSEEEEEETTTE----------------EEEEETTTTEEEEEEC-SSCCSSSCCCEEEECSSS
T ss_pred ---CCCce-EEEEECCCCCEEEEEcCCCe----------------EEEEECCCCcEEEEEE-ecCCceEEEEEEEEeCCC
Confidence 11111 112222 5666677766544 7788887765433221 11111111 112222356
Q ss_pred eEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 308 ~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
.+++.|+.. +.|.+||+.+..
T Consensus 250 ~~l~sg~~d--------------g~i~vwd~~~~~ 270 (312)
T 4ery_A 250 KWIVSGSED--------------NLVYIWNLQTKE 270 (312)
T ss_dssp CEEEECCTT--------------SCEEEEETTTCC
T ss_pred cEEEEECCC--------------CEEEEEECCCch
Confidence 777777753 358999998764
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.48 Score=47.74 Aligned_cols=184 Identities=11% Similarity=0.076 Sum_probs=95.4
Q ss_pred ccEEEEECCCCcEE-EecCCCCCC-----CceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEec
Q 006473 101 GDLYRYDVEKQEWK-VISSPNSPP-----PRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLN 172 (643)
Q Consensus 101 ndv~~yd~~~~~W~-~l~s~~~P~-----pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~ 172 (643)
+.+++||+.+.+-. .+....... +..-+.++.. ++.||+.+... -..+++||+.+.+-...-
T Consensus 111 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----------~~~i~~~d~~~~~~~~~~ 180 (353)
T 3vgz_A 111 SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK----------ESVIWVVDGGNIKLKTAI 180 (353)
T ss_dssp TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS----------SCEEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC----------CceEEEEcCCCCceEEEe
Confidence 47899999887643 333221111 1122334443 56788776321 246999999887644332
Q ss_pred cCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEE
Q 006473 173 LKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEV 248 (643)
Q Consensus 173 ~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~i 248 (643)
. . ....-+.+++. +++||+... .+.+++||+.+.+-........ . .......+++.. ++.|
T Consensus 181 ~--~-~~~~~~~~~~s~dg~~l~~~~~----------~~~i~~~d~~~~~~~~~~~~~~-~-~~~~~~~~~~~s~dg~~l 245 (353)
T 3vgz_A 181 Q--N-TGKMSTGLALDSEGKRLYTTNA----------DGELITIDTADNKILSRKKLLD-D-GKEHFFINISLDTARQRA 245 (353)
T ss_dssp C--C-CCTTCCCCEEETTTTEEEEECT----------TSEEEEEETTTTEEEEEEECCC-S-SSCCCEEEEEEETTTTEE
T ss_pred c--C-CCCccceEEECCCCCEEEEEcC----------CCeEEEEECCCCeEEEEEEcCC-C-CCCcccceEEECCCCCEE
Confidence 2 0 11112233333 456776532 2468889998775433222210 0 111112223333 5567
Q ss_pred EEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE--CCeEEEeccccccccCccccc
Q 006473 249 FLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIM 326 (643)
Q Consensus 249 yv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~--~~~iyvfGG~~~~~~~~~~~~ 326 (643)
|+.+... ..+++||+.+.+....-..+ .+ .++++. ++.+|+.+..
T Consensus 246 ~~~~~~~----------------~~v~~~d~~~~~~~~~~~~~---~~---~~~~~s~dg~~l~v~~~~----------- 292 (353)
T 3vgz_A 246 FITDSKA----------------AEVLVVDTRNGNILAKVAAP---ES---LAVLFNPARNEAYVTHRQ----------- 292 (353)
T ss_dssp EEEESSS----------------SEEEEEETTTCCEEEEEECS---SC---CCEEEETTTTEEEEEETT-----------
T ss_pred EEEeCCC----------------CEEEEEECCCCcEEEEEEcC---CC---ceEEECCCCCEEEEEECC-----------
Confidence 7765432 34889999887665443322 22 224443 3457776542
Q ss_pred cccCCcEEEEECCCCcEEE
Q 006473 327 SLFLNELYGFQLDNHRWYP 345 (643)
Q Consensus 327 ~~~~ndl~~yd~~t~~W~~ 345 (643)
-+.|++||+.+.+...
T Consensus 293 ---~~~v~~~d~~~~~~~~ 308 (353)
T 3vgz_A 293 ---AGKVSVIDAKSYKVVK 308 (353)
T ss_dssp ---TTEEEEEETTTTEEEE
T ss_pred ---CCeEEEEECCCCeEEE
Confidence 2469999998876543
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.11 Score=51.79 Aligned_cols=194 Identities=13% Similarity=0.052 Sum_probs=101.2
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCc
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~ 151 (643)
++...| ++.++++|+. -+.+.+||+.+.+...+....... ..-.+++.. ++.+++.|+..
T Consensus 102 ~~~~~~--~~~~l~~~~~---------d~~i~~~d~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d------- 162 (337)
T 1gxr_A 102 SCKLLP--DGCTLIVGGE---------ASTLSIWDLAAPTPRIKAELTSSA-PACYALAISPDSKVCFSCCSD------- 162 (337)
T ss_dssp EEEECT--TSSEEEEEES---------SSEEEEEECCCC--EEEEEEECSS-SCEEEEEECTTSSEEEEEETT-------
T ss_pred EEEEcC--CCCEEEEEcC---------CCcEEEEECCCCCcceeeecccCC-CceEEEEECCCCCEEEEEeCC-------
Confidence 344444 5666777762 247889999988754332211111 111222222 45566666642
Q ss_pred ceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCC
Q 006473 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (643)
..+.+||+.+.+....-. .. ......+.+ ++.+++.|+. -..+.+||+.+..-......
T Consensus 163 ----g~v~~~d~~~~~~~~~~~--~~--~~~i~~~~~~~~~~~l~~~~~---------dg~i~~~d~~~~~~~~~~~~-- 223 (337)
T 1gxr_A 163 ----GNIAVWDLHNQTLVRQFQ--GH--TDGASCIDISNDGTKLWTGGL---------DNTVRSWDLREGRQLQQHDF-- 223 (337)
T ss_dssp ----SCEEEEETTTTEEEEEEC--CC--SSCEEEEEECTTSSEEEEEET---------TSEEEEEETTTTEEEEEEEC--
T ss_pred ----CcEEEEeCCCCceeeeee--cc--cCceEEEEECCCCCEEEEEec---------CCcEEEEECCCCceEeeecC--
Confidence 358889998876543322 11 111222333 5556666664 24688999887653332221
Q ss_pred CCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CC
Q 006473 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KK 307 (643)
Q Consensus 230 ~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~ 307 (643)
+.+ -.+++.. ++.++++|+.++. +.+||+.+..-..+.. ....-.++++. ++
T Consensus 224 ---~~~--v~~~~~s~~~~~l~~~~~~~~----------------i~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~ 277 (337)
T 1gxr_A 224 ---TSQ--IFSLGYCPTGEWLAVGMESSN----------------VEVLHVNKPDKYQLHL-----HESCVLSLKFAYCG 277 (337)
T ss_dssp ---SSC--EEEEEECTTSSEEEEEETTSC----------------EEEEETTSSCEEEECC-----CSSCEEEEEECTTS
T ss_pred ---CCc--eEEEEECCCCCEEEEEcCCCc----------------EEEEECCCCCeEEEcC-----CccceeEEEECCCC
Confidence 111 1223333 5667777766544 7788887765333321 11122334443 56
Q ss_pred eEEEeccccccccCccccccccCCcEEEEECCCCcEE
Q 006473 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (643)
Q Consensus 308 ~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (643)
++++.|+.. +.|.+||+.+..-.
T Consensus 278 ~~l~~~~~d--------------g~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 278 KWFVSTGKD--------------NLLNAWRTPYGASI 300 (337)
T ss_dssp SEEEEEETT--------------SEEEEEETTTCCEE
T ss_pred CEEEEecCC--------------CcEEEEECCCCeEE
Confidence 677777643 35899999876543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=96.54 E-value=0.1 Score=53.24 Aligned_cols=148 Identities=11% Similarity=0.103 Sum_probs=75.5
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCc
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~ 151 (643)
++.+.| ++.++++|+. -+.+++||+.+.+|..+..... ....-.+++.. ++.+++.|+..
T Consensus 13 ~~~~s~--~~~~l~~~~~---------d~~v~i~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~d------- 73 (372)
T 1k8k_C 13 CHAWNK--DRTQIAICPN---------NHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSNRIVTCGTD------- 73 (372)
T ss_dssp EEEECT--TSSEEEEECS---------SSEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTTEEEEEETT-------
T ss_pred EEEECC--CCCEEEEEeC---------CCEEEEEeCCCCcEEeeeeecC-CCCcccEEEEeCCCCEEEEEcCC-------
Confidence 444555 6778888873 2478899999987665543211 11112223333 55666666642
Q ss_pred ceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCc-eEEeccCC
Q 006473 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK-WQEIKPRF 228 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~-W~~v~~~~ 228 (643)
..+.+||+.+..+..... .........++.+ ++.+++.|+.+ ..+.+||+.+.. |..+....
T Consensus 74 ----g~i~vwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d---------~~v~i~d~~~~~~~~~~~~~~ 138 (372)
T 1k8k_C 74 ----RNAYVWTLKGRTWKPTLV--ILRINRAARCVRWAPNEKKFAVGSGS---------RVISICYFEQENDWWVCKHIK 138 (372)
T ss_dssp ----SCEEEEEEETTEEEEEEE--CCCCSSCEEEEEECTTSSEEEEEETT---------SSEEEEEEETTTTEEEEEEEC
T ss_pred ----CeEEEEECCCCeeeeeEE--eecCCCceeEEEECCCCCEEEEEeCC---------CEEEEEEecCCCcceeeeeee
Confidence 357788888887765433 1111112222333 45666666642 346666665543 33332221
Q ss_pred CCCCCCCccceeEEEe-CCEEEEEcCCCCC
Q 006473 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (643)
Q Consensus 229 ~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~ 257 (643)
. +....-.++... ++.+++.|+.++.
T Consensus 139 ~---~~~~~i~~~~~~~~~~~l~~~~~dg~ 165 (372)
T 1k8k_C 139 K---PIRSTVLSLDWHPNSVLLAAGSCDFK 165 (372)
T ss_dssp T---TCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred c---ccCCCeeEEEEcCCCCEEEEEcCCCC
Confidence 0 111122223333 5667777776654
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.22 Score=57.48 Aligned_cols=188 Identities=10% Similarity=-0.019 Sum_probs=101.5
Q ss_pred cEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCC
Q 006473 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (643)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (643)
-|++|++.+..+..+..........-++++.. ++.||| |.. ...+++||+.+++++.+...+.+. .
T Consensus 384 Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~-----------~~Gl~~~~~~~~~~~~~~~~~~~~-~ 450 (781)
T 3v9f_A 384 GINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTY-----------LGNISYYNTRLKKFQIIELEKNEL-L 450 (781)
T ss_dssp CEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EET-----------TEEEEEECSSSCEEEECCSTTTCC-C
T ss_pred cEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-Eec-----------cCCEEEEcCCCCcEEEeccCCCCC-C
Confidence 47889998877765532111111222333333 567777 321 145889999999998875421111 1
Q ss_pred ceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCC
Q 006473 181 SGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEV 258 (643)
Q Consensus 181 s~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~ 258 (643)
.-.+++.. ++.||+- . ...|++||+.+.+|..+........+.. .-.+++.. ++.|+|- .....
T Consensus 451 ~v~~i~~d~~g~lwig-t----------~~Gl~~~~~~~~~~~~~~~~~~~~~~~~-~i~~i~~d~~g~lWig-t~~~G- 516 (781)
T 3v9f_A 451 DVRVFYEDKNKKIWIG-T----------HAGVFVIDLASKKVIHHYDTSNSQLLEN-FVRSIAQDSEGRFWIG-TFGGG- 516 (781)
T ss_dssp CEEEEEECTTSEEEEE-E----------TTEEEEEESSSSSCCEEECTTTSSCSCS-CEEEEEECTTCCEEEE-ESSSC-
T ss_pred eEEEEEECCCCCEEEE-E----------CCceEEEeCCCCeEEecccCcccccccc-eeEEEEEcCCCCEEEE-EcCCC-
Confidence 11222222 5677763 2 1458999999998887764421111111 11222222 5666653 22222
Q ss_pred CCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcE-EEE
Q 006473 259 STDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNEL-YGF 336 (643)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl-~~y 336 (643)
+++|++.+.++.........|.... .+++.. ++.|+|... . -| ++|
T Consensus 517 ---------------l~~~~~~~~~~~~~~~~~~l~~~~i-~~i~~d~~g~lWi~T~-~---------------Glv~~~ 564 (781)
T 3v9f_A 517 ---------------VGIYTPDMQLVRKFNQYEGFCSNTI-NQIYRSSKGQMWLATG-E---------------GLVCFP 564 (781)
T ss_dssp ---------------EEEECTTCCEEEEECTTTTCSCSCE-EEEEECTTSCEEEEET-T---------------EEEEES
T ss_pred ---------------EEEEeCCCCeEEEccCCCCCCCCee-EEEEECCCCCEEEEEC-C---------------CceEEE
Confidence 7899999999888754322232222 223322 466666432 2 26 889
Q ss_pred ECCCCcEEEeEe
Q 006473 337 QLDNHRWYPLEL 348 (643)
Q Consensus 337 d~~t~~W~~l~~ 348 (643)
|+.++++..+..
T Consensus 565 d~~~~~~~~~~~ 576 (781)
T 3v9f_A 565 SARNFDYQVFQR 576 (781)
T ss_dssp CTTTCCCEEECG
T ss_pred CCCCCcEEEccc
Confidence 998888766543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.076 Score=54.14 Aligned_cols=191 Identities=9% Similarity=0.031 Sum_probs=100.0
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--C--CEEEEEeCccCCCCCCcceecC
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--K--NYLYIFGGEFTSPNQERFHHYK 156 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~--~~iyvfGG~~~~~~~~~~~~~~ 156 (643)
++.+++.|+. + +.+.+|++....+..+.... .......++.+ . +.+++.|+.. .
T Consensus 22 ~~~~l~~~~~--d-------g~i~iw~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~d-----------g 79 (379)
T 3jrp_A 22 YGKRLATCSS--D-------KTIKIFEVEGETHKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYD-----------G 79 (379)
T ss_dssp SSSEEEEEET--T-------SCEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEETT-----------S
T ss_pred CCCEEEEEEC--C-------CcEEEEecCCCcceeeeEec--CCCCcEEEEEeCCCCCCCEEEEeccC-----------C
Confidence 5677777772 2 35788888777776554322 11112222333 2 5677777653 3
Q ss_pred eEEEEECCCCcEEEeccCCCCCCCceeEEEEE--C--CEEEEEeeeecCCCceeeeccEEEEEcCCCce-EEeccCCCCC
Q 006473 157 DFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--K--HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW-QEIKPRFGSM 231 (643)
Q Consensus 157 dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~--~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W-~~v~~~~~~~ 231 (643)
.+.+||+.++.|..+... ........++.+ . +.+++.|+.+ ..+.+||+.+... ........
T Consensus 80 ~v~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~d---------~~i~v~d~~~~~~~~~~~~~~~-- 146 (379)
T 3jrp_A 80 KVLIWKEENGRWSQIAVH--AVHSASVNSVQWAPHEYGPLLLVASSD---------GKVSVVEFKENGTTSPIIIDAH-- 146 (379)
T ss_dssp CEEEEEEETTEEEEEEEE--CCCSSCEEEEEECCGGGCSEEEEEETT---------SEEEEEECCTTSCCCEEEEECC--
T ss_pred EEEEEEcCCCceeEeeee--cCCCcceEEEEeCCCCCCCEEEEecCC---------CcEEEEecCCCCceeeEEecCC--
Confidence 477888888888766542 222222233333 2 5667777642 4577888876532 11111100
Q ss_pred CCCCccceeEEEe--------------CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCC--CCeeEEeccCCCCCC
Q 006473 232 WPSPRSGFQFFVY--------------QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR--TWEWSKVKKIGMPPG 295 (643)
Q Consensus 232 ~P~~R~~~s~~~~--------------~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~--t~~W~~l~~~g~~P~ 295 (643)
..+. .++... ++.+++.|+.++. +.+||+. ...|..+..... .
T Consensus 147 -~~~v--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~----------------i~i~d~~~~~~~~~~~~~~~~--h 205 (379)
T 3jrp_A 147 -AIGV--NSASWAPATIEEDGEHNGTKESRKFVTGGADNL----------------VKIWKYNSDAQTYVLESTLEG--H 205 (379)
T ss_dssp -TTCE--EEEEECCCC----------CTTCEEEEEETTSC----------------EEEEEEETTTTEEEEEEEECC--C
T ss_pred -CCce--EEEEEcCccccccccccCCCCCCEEEEEeCCCe----------------EEEEEecCCCcceeeEEEEec--c
Confidence 1111 122222 3677888877654 5666654 344555443211 1
Q ss_pred CceeeEEEEE-C---CeEEEeccccccccCccccccccCCcEEEEECCCC
Q 006473 296 PRAGFSMCVH-K---KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (643)
Q Consensus 296 ~R~g~s~~~~-~---~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (643)
...-.++++. + +.+++.|+.. ..|.+||+.+.
T Consensus 206 ~~~v~~~~~sp~~~~~~~l~s~~~d--------------g~i~iwd~~~~ 241 (379)
T 3jrp_A 206 SDWVRDVAWSPTVLLRSYLASVSQD--------------RTCIIWTQDNE 241 (379)
T ss_dssp SSCEEEEEECCCCSSSEEEEEEETT--------------SCEEEEEESST
T ss_pred cCcEeEEEECCCCCCCCeEEEEeCC--------------CEEEEEeCCCC
Confidence 1122334444 3 6788887754 34888887764
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=96.52 E-value=0.49 Score=47.32 Aligned_cols=208 Identities=10% Similarity=0.003 Sum_probs=102.6
Q ss_pred CCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCC
Q 006473 69 RSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSP 147 (643)
Q Consensus 69 R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~ 147 (643)
..+-+.+..+. ++.||+..-. .+.|++||+.++....+..+. +. .+++.. ++.||+..+
T Consensus 13 ~~~Egp~w~~~-~~~l~~~d~~---------~~~i~~~d~~~~~~~~~~~~~----~~-~~i~~~~dG~l~v~~~----- 72 (297)
T 3g4e_A 13 RCGESPVWEEV-SNSLLFVDIP---------AKKVCRWDSFTKQVQRVTMDA----PV-SSVALRQSGGYVATIG----- 72 (297)
T ss_dssp SBEEEEEEETT-TTEEEEEETT---------TTEEEEEETTTCCEEEEECSS----CE-EEEEEBTTSSEEEEET-----
T ss_pred ccccCCeEECC-CCEEEEEECC---------CCEEEEEECCCCcEEEEeCCC----ce-EEEEECCCCCEEEEEC-----
Confidence 34455555543 4678877651 247899999988766554321 11 222332 556666531
Q ss_pred CCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCC---ceeeeccEEEEEcCCCceE
Q 006473 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLR---EVRYYNDLYVFDLDQFKWQ 222 (643)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~---~~~~~~dv~~yD~~t~~W~ 222 (643)
+.+++||+.+.+++.+.......+......+.+ +++||+ |....... .......||++++.. +..
T Consensus 73 --------~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~-~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~ 142 (297)
T 3g4e_A 73 --------TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFA-GTMAEETAPAVLERHQGALYSLFPDH-HVK 142 (297)
T ss_dssp --------TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEE-EEEECCSBTTBCCTTCEEEEEECTTS-CEE
T ss_pred --------CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEE-ecCCcccccccccCCCcEEEEEECCC-CEE
Confidence 468999999999887754211112222222223 567765 33221100 001134688888753 333
Q ss_pred EeccCCCCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeC--CCCeeEEeccCCCCCC-Cc
Q 006473 223 EIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDP--RTWEWSKVKKIGMPPG-PR 297 (643)
Q Consensus 223 ~v~~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~--~t~~W~~l~~~g~~P~-~R 297 (643)
.+... ...+ ..++.. +..||+...... .+++|+. .+............+. ..
T Consensus 143 ~~~~~----~~~p---ngi~~spdg~~lyv~~~~~~----------------~i~~~~~d~~~G~~~~~~~~~~~~~~~~ 199 (297)
T 3g4e_A 143 KYFDQ----VDIS---NGLDWSLDHKIFYYIDSLSY----------------SVDAFDYDLQTGQISNRRSVYKLEKEEQ 199 (297)
T ss_dssp EEEEE----ESBE---EEEEECTTSCEEEEEEGGGT----------------EEEEEEECTTTCCEEEEEEEEECCGGGC
T ss_pred EEeec----cccc---cceEEcCCCCEEEEecCCCC----------------cEEEEeccCCCCcccCcEEEEECCCCCC
Confidence 32211 0111 223333 446777754332 3677764 4444332111000111 11
Q ss_pred eeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCCCcE
Q 006473 298 AGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (643)
Q Consensus 298 ~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (643)
.-.++++- +++||+.... -+.|++||+.+.+.
T Consensus 200 ~p~g~~~d~~G~lwva~~~--------------~~~v~~~d~~tG~~ 232 (297)
T 3g4e_A 200 IPDGMCIDAEGKLWVACYN--------------GGRVIRLDPVTGKR 232 (297)
T ss_dssp EEEEEEEBTTSCEEEEEET--------------TTEEEEECTTTCCE
T ss_pred CCCeeEECCCCCEEEEEcC--------------CCEEEEEcCCCceE
Confidence 22345554 5777776421 13489999987654
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=96.37 E-value=0.28 Score=48.83 Aligned_cols=135 Identities=10% Similarity=0.120 Sum_probs=67.9
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCC-CCceeeEEEEE-C-CEEEEEeCccCCCC
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSP-PPRSAHQAVSW-K-NYLYIFGGEFTSPN 148 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P-~pRs~ha~~~~-~-~~iyvfGG~~~~~~ 148 (643)
.++++.+ ++.||+..+.. +......+.|++||+.++++..+..+... ....-++++.. + +.|||....
T Consensus 21 ~~~~~~~--~g~l~~~~~~~--~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~----- 91 (314)
T 1pjx_A 21 EGPVFDK--NGDFYIVAPEV--EVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR----- 91 (314)
T ss_dssp EEEEECT--TSCEEEEETTC--EETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-----
T ss_pred cCceECC--CCCEEEEEecc--ccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC-----
Confidence 4555554 67888871100 00001235789999999988876531000 11112333333 4 788887641
Q ss_pred CCcceecCeEEEEECCCCcEEEe-ccCCCCCC-CceeEEEEE-CCEEEEEeeeecCC------CceeeeccEEEEEcCCC
Q 006473 149 QERFHHYKDFWMLDLKTNQWEQL-NLKGCPSP-RSGHRMVLY-KHKIIVFGGFYDTL------REVRYYNDLYVFDLDQF 219 (643)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~-~~~g~P~~-Rs~h~~~~~-~~~lyvfGG~~~~~------~~~~~~~dv~~yD~~t~ 219 (643)
+.+++||+. ++...+ .......+ ..-+.+++. ++.||+........ ........+++||+. .
T Consensus 92 -------~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g 162 (314)
T 1pjx_A 92 -------LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G 162 (314)
T ss_dssp -------TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S
T ss_pred -------CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C
Confidence 358899998 777665 33111111 112233333 56788754321000 000112578999886 5
Q ss_pred ceEEe
Q 006473 220 KWQEI 224 (643)
Q Consensus 220 ~W~~v 224 (643)
+...+
T Consensus 163 ~~~~~ 167 (314)
T 1pjx_A 163 QMIQV 167 (314)
T ss_dssp CEEEE
T ss_pred CEEEe
Confidence 55444
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.43 Score=49.89 Aligned_cols=209 Identities=11% Similarity=0.045 Sum_probs=100.8
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDF 158 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv 158 (643)
++.+|+.|+. -+.+++||+.+.+....-.. ....-.+++.. +..+|+.++.. ..+
T Consensus 180 ~~~~~~s~~~---------d~~v~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~-----------~~i 236 (433)
T 3bws_A 180 HNELWVSQMQ---------ANAVHVFDLKTLAYKATVDL---TGKWSKILLYDPIRDLVYCSNWIS-----------EDI 236 (433)
T ss_dssp GTEEEEEEGG---------GTEEEEEETTTCCEEEEEEC---SSSSEEEEEEETTTTEEEEEETTT-----------TEE
T ss_pred CCEEEEEECC---------CCEEEEEECCCceEEEEEcC---CCCCeeEEEEcCCCCEEEEEecCC-----------CcE
Confidence 4556655551 24688999887654432111 11112233333 45677776531 468
Q ss_pred EEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCcc
Q 006473 159 WMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237 (643)
Q Consensus 159 ~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~ 237 (643)
++||+.+.+...... ....-++++.. ++..+++++...... ..--..+++||+.+.+-...... +..
T Consensus 237 ~~~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~~~~~~-~~~dg~i~~~d~~~~~~~~~~~~-----~~~-- 304 (433)
T 3bws_A 237 SVIDRKTKLEIRKTD----KIGLPRGLLLSKDGKELYIAQFSASNQ-ESGGGRLGIYSMDKEKLIDTIGP-----PGN-- 304 (433)
T ss_dssp EEEETTTTEEEEECC----CCSEEEEEEECTTSSEEEEEEEESCTT-CSCCEEEEEEETTTTEEEEEEEE-----EEC--
T ss_pred EEEECCCCcEEEEec----CCCCceEEEEcCCCCEEEEEECCCCcc-ccCCCeEEEEECCCCcEEeeccC-----CCC--
Confidence 999998887654322 12222333332 444444555432110 00124788999987754333211 111
Q ss_pred ceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEecc
Q 006473 238 GFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGG 314 (643)
Q Consensus 238 ~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG 314 (643)
-.+++.. +..+|+.++..+. +.+||+.+.+-...-.. ...-.++++. +++.+++++
T Consensus 305 ~~~~~~~~~g~~l~~~~~~~~~----------------v~v~d~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~ 363 (433)
T 3bws_A 305 KRHIVSGNTENKIYVSDMCCSK----------------IEVYDLKEKKVQKSIPV-----FDKPNTIALSPDGKYLYVSC 363 (433)
T ss_dssp EEEEEECSSTTEEEEEETTTTE----------------EEEEETTTTEEEEEEEC-----SSSEEEEEECTTSSEEEEEE
T ss_pred cceEEECCCCCEEEEEecCCCE----------------EEEEECCCCcEEEEecC-----CCCCCeEEEcCCCCEEEEEe
Confidence 1122222 4478888766543 88899887654433221 1122344444 454444444
Q ss_pred ccccccCccc-cccccCCcEEEEECCCCcEEE
Q 006473 315 VVDMEMKGDV-IMSLFLNELYGFQLDNHRWYP 345 (643)
Q Consensus 315 ~~~~~~~~~~-~~~~~~ndl~~yd~~t~~W~~ 345 (643)
.......... ..+..-..|++||+.+.+...
T Consensus 364 ~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~ 395 (433)
T 3bws_A 364 RGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE 395 (433)
T ss_dssp CCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE
T ss_pred cCCCccccccccccccceEEEEEECCCCcEEE
Confidence 3211000000 001112379999998876444
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.74 Score=45.05 Aligned_cols=200 Identities=8% Similarity=-0.025 Sum_probs=105.7
Q ss_pred ceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCC
Q 006473 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQ 149 (643)
Q Consensus 71 ~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~ 149 (643)
-+++++.+ ++.||+... + .+.|++||+. +++..+..+. ....-+.++.. ++.||+....
T Consensus 64 ~~~i~~~~--~g~l~v~~~----~-----~~~v~~~d~~-g~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~------ 123 (300)
T 2qc5_A 64 VMCLIVSS--LGDIWFTEN----G-----ANKIGKLSKK-GGFTEYPLPQ--PDSGPYGITEGLNGDIWFTQLN------ 123 (300)
T ss_dssp EEEEEECT--TSCEEEEET----T-----TTEEEEECTT-SCEEEEECSS--TTCCEEEEEECSTTCEEEEETT------
T ss_pred ceeEEECC--CCCEEEEec----C-----CCeEEEECCC-CCeEEecCCC--CCCCCccceECCCCCEEEEccC------
Confidence 34455543 567777543 1 2468899988 7776554321 11223444443 6788887532
Q ss_pred CcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCC
Q 006473 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (643)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (643)
-..+++||+. .+...+... .....-+.+++. ++.||+.... ...+++||+ +.++..+....
T Consensus 124 -----~~~i~~~~~~-g~~~~~~~~--~~~~~~~~i~~d~~g~l~v~~~~---------~~~i~~~~~-~g~~~~~~~~~ 185 (300)
T 2qc5_A 124 -----GDRIGKLTAD-GTIYEYDLP--NKGSYPAFITLGSDNALWFTENQ---------NNSIGRITN-TGKLEEYPLPT 185 (300)
T ss_dssp -----TTEEEEECTT-SCEEEEECS--STTCCEEEEEECTTSSEEEEETT---------TTEEEEECT-TCCEEEEECSS
T ss_pred -----CCeEEEECCC-CCEEEccCC--CCCCCceeEEECCCCCEEEEecC---------CCeEEEECC-CCcEEEeeCCC
Confidence 2468889987 666544321 011222333332 4667775321 246889998 66666554321
Q ss_pred CCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-C
Q 006473 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-K 306 (643)
Q Consensus 229 ~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~ 306 (643)
....-.+++.. ++.||+...... .+++|++ +..+....... ....-.++++. +
T Consensus 186 -----~~~~~~~i~~d~~g~l~v~~~~~~----------------~i~~~~~-~g~~~~~~~~~---~~~~~~~i~~d~~ 240 (300)
T 2qc5_A 186 -----NAAAPVGITSGNDGALWFVEIMGN----------------KIGRITT-TGEISEYDIPT---PNARPHAITAGKN 240 (300)
T ss_dssp -----TTCCEEEEEECTTSSEEEEETTTT----------------EEEEECT-TCCEEEEECSS---TTCCEEEEEECST
T ss_pred -----CCCCcceEEECCCCCEEEEccCCC----------------EEEEEcC-CCcEEEEECCC---CCCCceEEEECCC
Confidence 11111233333 567887643322 3788888 55555543211 11122344443 5
Q ss_pred CeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 307 KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 307 ~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
++||+.... .+.|++||+ +.+...+..
T Consensus 241 g~l~v~~~~--------------~~~i~~~~~-~g~~~~~~~ 267 (300)
T 2qc5_A 241 SEIWFTEWG--------------ANQIGRITN-DNTIQEYQL 267 (300)
T ss_dssp TCEEEEETT--------------TTEEEEECT-TSCEEEEEC
T ss_pred CCEEEeccC--------------CCeEEEECC-CCcEEEEEC
Confidence 677776522 245899998 466665543
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.97 Score=44.33 Aligned_cols=208 Identities=10% Similarity=0.052 Sum_probs=108.0
Q ss_pred ceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCC--CceeeEEEEE--CCEEEEEeCccCC
Q 006473 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPP--PRSAHQAVSW--KNYLYIFGGEFTS 146 (643)
Q Consensus 71 ~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~--pRs~ha~~~~--~~~iyvfGG~~~~ 146 (643)
-+++++.+ ++.||+.+.. .+.|++||+.......+....... ...-+.++.. ++.|||.+...
T Consensus 32 p~~v~~~~--~g~l~v~~~~---------~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~-- 98 (286)
T 1q7f_A 32 PSGVAVNA--QNDIIVADTN---------NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP-- 98 (286)
T ss_dssp EEEEEECT--TCCEEEEEGG---------GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG--
T ss_pred CceEEECC--CCCEEEEECC---------CCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC--
Confidence 34555554 5678887551 246889998865544443211111 1123344442 67899886421
Q ss_pred CCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEec
Q 006473 147 PNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (643)
Q Consensus 147 ~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (643)
...+.+||.....-..+.. +....-+.+++. ++.||+.... .+.|++||+.......+.
T Consensus 99 --------~~~i~~~d~~g~~~~~~~~---~~~~~~~~i~~~~~g~l~v~~~~---------~~~i~~~~~~g~~~~~~~ 158 (286)
T 1q7f_A 99 --------THQIQIYNQYGQFVRKFGA---TILQHPRGVTVDNKGRIIVVECK---------VMRVIIFDQNGNVLHKFG 158 (286)
T ss_dssp --------GCEEEEECTTSCEEEEECT---TTCSCEEEEEECTTSCEEEEETT---------TTEEEEECTTSCEEEEEE
T ss_pred --------CCEEEEECCCCcEEEEecC---ccCCCceEEEEeCCCCEEEEECC---------CCEEEEEcCCCCEEEEeC
Confidence 2468889865444333432 111122334443 5678876432 256888987655444443
Q ss_pred cCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEE
Q 006473 226 PRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV 304 (643)
Q Consensus 226 ~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~ 304 (643)
... ....| .++++. ++.||+.+.... .+++|++.......+...+.. ..-.++++
T Consensus 159 ~~~--~~~~p---~~i~~~~~g~l~v~~~~~~----------------~i~~~~~~g~~~~~~~~~g~~---~~p~~i~~ 214 (286)
T 1q7f_A 159 CSK--HLEFP---NGVVVNDKQEIFISDNRAH----------------CVKVFNYEGQYLRQIGGEGIT---NYPIGVGI 214 (286)
T ss_dssp CTT--TCSSE---EEEEECSSSEEEEEEGGGT----------------EEEEEETTCCEEEEESCTTTS---CSEEEEEE
T ss_pred CCC--ccCCc---EEEEECCCCCEEEEECCCC----------------EEEEEcCCCCEEEEEccCCcc---CCCcEEEE
Confidence 210 01111 233333 678888765433 388899866544444322211 12234444
Q ss_pred E-CCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 305 H-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 305 ~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
. ++++|+...... ..|.+||+....-..+..
T Consensus 215 d~~G~l~v~~~~~~-------------~~i~~~~~~g~~~~~~~~ 246 (286)
T 1q7f_A 215 NSNGEILIADNHNN-------------FNLTIFTQDGQLISALES 246 (286)
T ss_dssp CTTCCEEEEECSSS-------------CEEEEECTTSCEEEEEEE
T ss_pred CCCCCEEEEeCCCC-------------EEEEEECCCCCEEEEEcc
Confidence 3 578888764320 158999976554444433
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.37 Score=50.39 Aligned_cols=203 Identities=10% Similarity=0.023 Sum_probs=105.4
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCC-CCCCceeeEEEEE--CCEEEEEeCccCCCCC
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN-SPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~-~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~ 149 (643)
++++.| ++.+|+.++. -+.+++||+.+++........ .+.+......+.+ ++.+|+.|+..
T Consensus 127 ~~~~s~--~~~~~~~~~~---------~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d----- 190 (433)
T 3bws_A 127 SVRFID--NTRLAIPLLE---------DEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA----- 190 (433)
T ss_dssp CCEESS--SSEEEEEBTT---------SSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG-----
T ss_pred EEEEeC--CCeEEEEeCC---------CCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC-----
Confidence 455555 5778777762 136899999988776543211 0111112222333 67888887642
Q ss_pred CcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccC
Q 006473 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (643)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (643)
..+.+||+.+.+....-. .....-.+++.. ++.+|+.++. -..+++||+.+.+....-..
T Consensus 191 ------~~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~---------~~~i~~~d~~~~~~~~~~~~ 252 (433)
T 3bws_A 191 ------NAVHVFDLKTLAYKATVD---LTGKWSKILLYDPIRDLVYCSNWI---------SEDISVIDRKTKLEIRKTDK 252 (433)
T ss_dssp ------TEEEEEETTTCCEEEEEE---CSSSSEEEEEEETTTTEEEEEETT---------TTEEEEEETTTTEEEEECCC
T ss_pred ------CEEEEEECCCceEEEEEc---CCCCCeeEEEEcCCCCEEEEEecC---------CCcEEEEECCCCcEEEEecC
Confidence 468899998765433221 111112233333 4567666543 24689999987765333221
Q ss_pred CCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-
Q 006473 228 FGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH- 305 (643)
Q Consensus 228 ~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~- 305 (643)
...-.+++.. ++..+++++..... .......+++||+.+.+-...... + ..-.++++.
T Consensus 253 -------~~~~~~~~~~~~g~~l~~~~~~~~~--------~~~~dg~i~~~d~~~~~~~~~~~~---~--~~~~~~~~~~ 312 (433)
T 3bws_A 253 -------IGLPRGLLLSKDGKELYIAQFSASN--------QESGGGRLGIYSMDKEKLIDTIGP---P--GNKRHIVSGN 312 (433)
T ss_dssp -------CSEEEEEEECTTSSEEEEEEEESCT--------TCSCCEEEEEEETTTTEEEEEEEE---E--ECEEEEEECS
T ss_pred -------CCCceEEEEcCCCCEEEEEECCCCc--------cccCCCeEEEEECCCCcEEeeccC---C--CCcceEEECC
Confidence 1112233333 44444444432210 000134688999887754443211 1 111223333
Q ss_pred -CCeEEEeccccccccCccccccccCCcEEEEECCCCcE
Q 006473 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (643)
Q Consensus 306 -~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (643)
+..+|+.++.. +.|.+||+.+.+-
T Consensus 313 ~g~~l~~~~~~~--------------~~v~v~d~~~~~~ 337 (433)
T 3bws_A 313 TENKIYVSDMCC--------------SKIEVYDLKEKKV 337 (433)
T ss_dssp STTEEEEEETTT--------------TEEEEEETTTTEE
T ss_pred CCCEEEEEecCC--------------CEEEEEECCCCcE
Confidence 33577765532 4589999987653
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.13 Score=52.46 Aligned_cols=201 Identities=11% Similarity=0.106 Sum_probs=102.8
Q ss_pred CEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--C--CEEEEEeCccCCCCCCcceecCe
Q 006473 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--K--NYLYIFGGEFTSPNQERFHHYKD 157 (643)
Q Consensus 82 ~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~--~~iyvfGG~~~~~~~~~~~~~~d 157 (643)
+.+++.|+. + ..+.+||+.++.|..+.... ........+.+ . +.+++.|+.. ..
T Consensus 69 ~~~l~s~~~--d-------g~v~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~d-----------~~ 126 (379)
T 3jrp_A 69 GTILASCSY--D-------GKVLIWKEENGRWSQIAVHA--VHSASVNSVQWAPHEYGPLLLVASSD-----------GK 126 (379)
T ss_dssp CSEEEEEET--T-------SCEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEETT-----------SE
T ss_pred CCEEEEecc--C-------CEEEEEEcCCCceeEeeeec--CCCcceEEEEeCCCCCCCEEEEecCC-----------Cc
Confidence 567777772 2 36888999999887654322 11122222333 2 5677777642 45
Q ss_pred EEEEECCCCcE-EEeccCCCCCCCceeEEEEE--------------CCEEEEEeeeecCCCceeeeccEEEEEcCCC--c
Q 006473 158 FWMLDLKTNQW-EQLNLKGCPSPRSGHRMVLY--------------KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--K 220 (643)
Q Consensus 158 v~~yD~~t~~W-~~~~~~g~P~~Rs~h~~~~~--------------~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~--~ 220 (643)
+.+||+.+... ......+ ....-.+++.. ++.+++.|+.+ ..+.+||+.+. .
T Consensus 127 i~v~d~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~ 195 (379)
T 3jrp_A 127 VSVVEFKENGTTSPIIIDA--HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD---------NLVKIWKYNSDAQT 195 (379)
T ss_dssp EEEEECCTTSCCCEEEEEC--CTTCEEEEEECCCC----------CTTCEEEEEETT---------SCEEEEEEETTTTE
T ss_pred EEEEecCCCCceeeEEecC--CCCceEEEEEcCccccccccccCCCCCCEEEEEeCC---------CeEEEEEecCCCcc
Confidence 77888876532 1111101 11111122222 35677777753 35777777554 3
Q ss_pred eEEeccCCCCCCCCCccceeEEEe-C---CEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCC--eeEEeccCCCCC
Q 006473 221 WQEIKPRFGSMWPSPRSGFQFFVY-Q---DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPP 294 (643)
Q Consensus 221 W~~v~~~~~~~~P~~R~~~s~~~~-~---~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~g~~P 294 (643)
|..+..... ....-.+++.. + +.+++.|+.++. +.+||+.+. .+...... ...
T Consensus 196 ~~~~~~~~~----h~~~v~~~~~sp~~~~~~~l~s~~~dg~----------------i~iwd~~~~~~~~~~~~~~-~~~ 254 (379)
T 3jrp_A 196 YVLESTLEG----HSDWVRDVAWSPTVLLRSYLASVSQDRT----------------CIIWTQDNEQGPWKKTLLK-EEK 254 (379)
T ss_dssp EEEEEEECC----CSSCEEEEEECCCCSSSEEEEEEETTSC----------------EEEEEESSTTSCCEEEESS-SSC
T ss_pred eeeEEEEec----ccCcEeEEEECCCCCCCCeEEEEeCCCE----------------EEEEeCCCCCccceeeeec-ccc
Confidence 554443311 11111223333 4 788888887765 666666554 22222111 111
Q ss_pred CCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECC-CCcEEEeEecC
Q 006473 295 GPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD-NHRWYPLELRK 350 (643)
Q Consensus 295 ~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~-t~~W~~l~~~~ 350 (643)
....-.++++. ++.++++|+.. ..|.+|++. ...|..+....
T Consensus 255 ~~~~v~~~~~s~~g~~l~~~~~d--------------g~i~iw~~~~~~~~~~~~~~~ 298 (379)
T 3jrp_A 255 FPDVLWRASWSLSGNVLALSGGD--------------NKVTLWKENLEGKWEPAGEVH 298 (379)
T ss_dssp CSSCEEEEEECSSSCCEEEEESS--------------SSEEEEEEEETTEEEEEEEEC
T ss_pred CCCcEEEEEEcCCCCEEEEecCC--------------CcEEEEeCCCCCcccccccee
Confidence 12222333443 56777777653 348888877 56888877643
|
| >1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.24 Score=53.56 Aligned_cols=59 Identities=17% Similarity=0.278 Sum_probs=41.4
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEE
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~ 213 (643)
++.+|+|-| +..|+||..++......-.++|. --++..+.+++|+|-| +..|+
T Consensus 158 ~~~~yfFkG-------------~~yw~yd~~~~~~~~~~w~gi~~---iDAA~~~~g~~YfFkG-----------~~y~r 210 (460)
T 1qhu_A 158 DEGILFFQG-------------NRKWFWDLTTGTKKERSWPAVGN---CTSALRWLGRYYCFQG-----------NQFLR 210 (460)
T ss_dssp SSEEEEEET-------------TEEEEEETTTTEEEEECCTTSCC---CSEEEEETTEEEEEET-----------TEEEE
T ss_pred CCeEEEEec-------------ccEEEEecccceeecccCCCCCc---cchheeeCCceEEEEC-----------CEEEE
Confidence 678999988 45799999988765433333342 3456667899999987 35677
Q ss_pred EEcCCC
Q 006473 214 FDLDQF 219 (643)
Q Consensus 214 yD~~t~ 219 (643)
||..+.
T Consensus 211 fd~~~~ 216 (460)
T 1qhu_A 211 FNPVSG 216 (460)
T ss_dssp ECTTTC
T ss_pred EcCccC
Confidence 876543
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.27 Score=56.75 Aligned_cols=186 Identities=9% Similarity=0.093 Sum_probs=105.9
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCC-CC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PS 178 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~-P~ 178 (643)
+-|++|++.+++++.+..... ....-.+++.. ++.|||-.. ..+++||+.+..|..+..... +.
T Consensus 427 ~Gl~~~~~~~~~~~~~~~~~~-~~~~v~~i~~d~~g~lwigt~-------------~Gl~~~~~~~~~~~~~~~~~~~~~ 492 (781)
T 3v9f_A 427 GNISYYNTRLKKFQIIELEKN-ELLDVRVFYEDKNKKIWIGTH-------------AGVFVIDLASKKVIHHYDTSNSQL 492 (781)
T ss_dssp EEEEEECSSSCEEEECCSTTT-CCCCEEEEEECTTSEEEEEET-------------TEEEEEESSSSSCCEEECTTTSSC
T ss_pred CCEEEEcCCCCcEEEeccCCC-CCCeEEEEEECCCCCEEEEEC-------------CceEEEeCCCCeEEecccCccccc
Confidence 358899999999988754211 11222333333 567777431 458899999998877653210 11
Q ss_pred -CCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCC
Q 006473 179 -PRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYS 255 (643)
Q Consensus 179 -~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~ 255 (643)
...-.+++.. ++.||+- .. ...|++||+.+.++....... ..|.... .+++.. ++.|+|-.. .
T Consensus 493 ~~~~i~~i~~d~~g~lWig-t~---------~~Gl~~~~~~~~~~~~~~~~~--~l~~~~i-~~i~~d~~g~lWi~T~-~ 558 (781)
T 3v9f_A 493 LENFVRSIAQDSEGRFWIG-TF---------GGGVGIYTPDMQLVRKFNQYE--GFCSNTI-NQIYRSSKGQMWLATG-E 558 (781)
T ss_dssp SCSCEEEEEECTTCCEEEE-ES---------SSCEEEECTTCCEEEEECTTT--TCSCSCE-EEEEECTTSCEEEEET-T
T ss_pred ccceeEEEEEcCCCCEEEE-Ec---------CCCEEEEeCCCCeEEEccCCC--CCCCCee-EEEEECCCCCEEEEEC-C
Confidence 1111222222 5667763 21 135889999999888876431 1122211 222222 566776432 1
Q ss_pred CCCCCccCCCCCCceeeeE-EEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcE
Q 006473 256 KEVSTDKNQSEKGIIHSDL-WSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNEL 333 (643)
Q Consensus 256 ~~~~~~~~~~~~~~~~~dv-~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl 333 (643)
-+ ++||+.+.++.......-.|.... .+++.. ++.|++.+ . +-|
T Consensus 559 -----------------Glv~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lW~~t-~---------------~Gl 604 (781)
T 3v9f_A 559 -----------------GLVCFPSARNFDYQVFQRKEGLPNTHI-RAISEDKNGNIWAST-N---------------TGI 604 (781)
T ss_dssp -----------------EEEEESCTTTCCCEEECGGGTCSCCCC-CEEEECSSSCEEEEC-S---------------SCE
T ss_pred -----------------CceEEECCCCCcEEEccccCCCCCceE-EEEEECCCCCEEEEc-C---------------Cce
Confidence 15 889998888877654322343332 344443 56776654 2 238
Q ss_pred EEEECCCCcEEEeEe
Q 006473 334 YGFQLDNHRWYPLEL 348 (643)
Q Consensus 334 ~~yd~~t~~W~~l~~ 348 (643)
.+||+.+.++..+..
T Consensus 605 ~~~~~~~~~~~~~~~ 619 (781)
T 3v9f_A 605 SCYITSKKCFYTYDH 619 (781)
T ss_dssp EEEETTTTEEEEECG
T ss_pred EEEECCCCceEEecc
Confidence 999999988877764
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.43 Score=50.75 Aligned_cols=160 Identities=13% Similarity=0.067 Sum_probs=75.7
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECC--CCcEEE-ecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCC
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVE--KQEWKV-ISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPN 148 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~--~~~W~~-l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~ 148 (643)
++.+.|. +..|++.|+. -+.+.+|++. +..... +.... .+..-.+++.. ++..+++|+.
T Consensus 107 ~~~~s~d-~~~l~~~~~~---------dg~v~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~----- 169 (450)
T 2vdu_B 107 NLRLTSD-ESRLIACADS---------DKSLLVFDVDKTSKNVLKLRKRFC--FSKRPNAISIAEDDTTVIIADK----- 169 (450)
T ss_dssp EEEECTT-SSEEEEEEGG---------GTEEEEEEECSSSSSCEEEEEEEE--CSSCEEEEEECTTSSEEEEEET-----
T ss_pred EEEEcCC-CCEEEEEECC---------CCeEEEEECcCCCCceeeeeeccc--CCCCceEEEEcCCCCEEEEEeC-----
Confidence 3444442 3445677773 2357788877 443332 21100 11111222222 4556666653
Q ss_pred CCcceecCeEEEEECCCCcEEEeccCCCC-CCCceeEEEE-EC---CEEEEEeeeecCCCceeeeccEEEEEcCCCceEE
Q 006473 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCP-SPRSGHRMVL-YK---HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE 223 (643)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~g~P-~~Rs~h~~~~-~~---~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~ 223 (643)
...++.|++.+..........+. ....-.+++. -+ +.+++.|+.+ ..+.+||+.+.....
T Consensus 170 ------~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d---------~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 170 ------FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRD---------EHIKISHYPQCFIVD 234 (450)
T ss_dssp ------TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETT---------SCEEEEEESCTTCEE
T ss_pred ------CCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCC---------CcEEEEECCCCceee
Confidence 24578888876543210000010 0111112222 25 6777777742 468888887765433
Q ss_pred eccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeE
Q 006473 224 IKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (643)
Q Consensus 224 v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (643)
...... ..+.. +++..++.+++.|+.++. +.+||+.+.+..
T Consensus 235 ~~~~~h---~~~v~--~~~~sd~~~l~s~~~d~~----------------v~vwd~~~~~~~ 275 (450)
T 2vdu_B 235 KWLFGH---KHFVS--SICCGKDYLLLSAGGDDK----------------IFAWDWKTGKNL 275 (450)
T ss_dssp EECCCC---SSCEE--EEEECSTTEEEEEESSSE----------------EEEEETTTCCEE
T ss_pred eeecCC---CCceE--EEEECCCCEEEEEeCCCe----------------EEEEECCCCcEe
Confidence 211100 11111 122226777777776544 778888776543
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.61 Score=53.08 Aligned_cols=120 Identities=15% Similarity=0.205 Sum_probs=68.9
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCc--EEEecCCCC---CCC---ceeeEEEEECCEEEEEeCccCCCCCCcc
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNS---PPP---RSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~--W~~l~s~~~---P~p---Rs~ha~~~~~~~iyvfGG~~~~~~~~~~ 152 (643)
++.||+... .+.|+++|..+++ |+.-..... |.. ....+.++.++.||+...
T Consensus 77 ~g~vyv~~~----------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~---------- 136 (677)
T 1kb0_A 77 DGIMYVSAS----------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW---------- 136 (677)
T ss_dssp TTEEEEECG----------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT----------
T ss_pred CCEEEEECC----------CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC----------
Confidence 788888765 2579999998874 886433210 000 112234556888888643
Q ss_pred eecCeEEEEECCCCc--EEEeccCCCC-CCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc--eEEecc
Q 006473 153 HHYKDFWMLDLKTNQ--WEQLNLKGCP-SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKP 226 (643)
Q Consensus 153 ~~~~dv~~yD~~t~~--W~~~~~~g~P-~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~ 226 (643)
-..++.+|..|++ |+.-.....+ ......+.++.++.||+-.+.... .....|+.||..+.+ |+.-..
T Consensus 137 --dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~----~~~g~v~a~D~~tG~~~W~~~~~ 209 (677)
T 1kb0_A 137 --DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEY----GVRGYITAYDAETGERKWRWFSV 209 (677)
T ss_dssp --TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTT----CCBCEEEEEETTTCCEEEEEESS
T ss_pred --CCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEeccccc----CCCCEEEEEECCCCcEEEEeccC
Confidence 1468999998774 8764320101 011122335568888775432111 124579999998765 876543
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.46 Score=54.89 Aligned_cols=186 Identities=8% Similarity=0.063 Sum_probs=102.8
Q ss_pred cEEEEECCCCcEEEecCCCCCCC-ceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC
Q 006473 102 DLYRYDVEKQEWKVISSPNSPPP-RSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (643)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~p-Rs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (643)
-|++||+.++++..+.......+ ..-.+++.. ++.|||-.. +.+++||+.+++|+.+.....+..
T Consensus 428 Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-------------~Gl~~~~~~~~~~~~~~~~~~~~~ 494 (795)
T 4a2l_A 428 GLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-------------SALVRFNPEQRSFTTIEKEKDGTP 494 (795)
T ss_dssp EEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-------------SCEEEEETTTTEEEECCBCTTCCB
T ss_pred ceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-------------CceeEEeCCCCeEEEccccccccc
Confidence 57899999998888754221111 112222222 467776532 358899999999988764211111
Q ss_pred C--ce-eEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCC-CCCCCCccceeEEEe-CCEEEEEcC
Q 006473 180 R--SG-HRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG-SMWPSPRSGFQFFVY-QDEVFLYGG 253 (643)
Q Consensus 180 R--s~-h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~-~~~P~~R~~~s~~~~-~~~iyv~GG 253 (643)
. .. .+++.. ++.||+-.. ..|++||+.+.++ .+..... ...+. ..-.+++.. ++.|+|-..
T Consensus 495 ~~~~~i~~i~~d~~g~lWigt~-----------~Gl~~~~~~~~~~-~~~~~~~~~~l~~-~~i~~i~~d~~g~lWigT~ 561 (795)
T 4a2l_A 495 VVSKQITTLFRDSHKRLWIGGE-----------EGLSVFKQEGLDI-QKASILPVSNVTK-LFTNCIYEASNGIIWVGTR 561 (795)
T ss_dssp CCCCCEEEEEECTTCCEEEEES-----------SCEEEEEEETTEE-EECCCSCSCGGGG-SCEEEEEECTTSCEEEEES
T ss_pred cCCceEEEEEECCCCCEEEEeC-----------CceEEEeCCCCeE-EEecCCCCCCCCC-CeeEEEEECCCCCEEEEeC
Confidence 1 11 122222 567776321 3588999988887 4432100 00111 111222222 566776432
Q ss_pred CCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCc
Q 006473 254 YSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNE 332 (643)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~nd 332 (643)
. . +++||+.+.++.........|.... .+++.- ++.|++.+. +-
T Consensus 562 -~-G----------------l~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lWi~t~----------------~G 606 (795)
T 4a2l_A 562 -E-G----------------FYCFNEKDKQIKRYNTTNGLPNNVV-YGILEDSFGRLWLSTN----------------RG 606 (795)
T ss_dssp -S-C----------------EEEEETTTTEEEEECGGGTCSCSCE-EEEEECTTSCEEEEET----------------TE
T ss_pred -C-C----------------ceeECCCCCcEEEeCCCCCCchhhe-EEEEECCCCCEEEEcC----------------Cc
Confidence 1 2 7899999998887754322343322 334333 467766552 23
Q ss_pred EEEEECCCCcEEEeEe
Q 006473 333 LYGFQLDNHRWYPLEL 348 (643)
Q Consensus 333 l~~yd~~t~~W~~l~~ 348 (643)
|.+||+.+.++..+..
T Consensus 607 l~~~~~~~~~~~~~~~ 622 (795)
T 4a2l_A 607 ISCFNPETEKFRNFTE 622 (795)
T ss_dssp EEEEETTTTEEEEECG
T ss_pred eEEEcCCCCcEEEcCC
Confidence 8899999988877654
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=96.07 E-value=0.54 Score=46.85 Aligned_cols=193 Identities=12% Similarity=0.091 Sum_probs=100.2
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCc
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~ 151 (643)
++.+.| ++.+++.|+. + ..+.+|+..+......-... ...-.+++.. ++.+++.|+..
T Consensus 28 ~~~~s~--~~~~l~s~~~--d-------g~i~iw~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~s~~~d------- 86 (312)
T 4ery_A 28 SVKFSP--NGEWLASSSA--D-------KLIKIWGAYDGKFEKTISGH---KLGISDVAWSSDSNLLVSASDD------- 86 (312)
T ss_dssp EEEECT--TSSEEEEEET--T-------SCEEEEETTTCCEEEEECCC---SSCEEEEEECTTSSEEEEEETT-------
T ss_pred EEEECC--CCCEEEEeeC--C-------CeEEEEeCCCcccchhhccC---CCceEEEEEcCCCCEEEEECCC-------
Confidence 344444 5677777772 2 35778898887766543321 1111222222 45667777642
Q ss_pred ceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCC
Q 006473 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (643)
..+.+||+.+..-...-. .... .-.++.+ ++.+++.|+.+ ..+.+||+.+.+-...-..
T Consensus 87 ----~~i~vwd~~~~~~~~~~~--~~~~--~v~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~-- 147 (312)
T 4ery_A 87 ----KTLKIWDVSSGKCLKTLK--GHSN--YVFCCNFNPQSNLIVSGSFD---------ESVRIWDVKTGKCLKTLPA-- 147 (312)
T ss_dssp ----SEEEEEETTTCCEEEEEE--CCSS--CEEEEEECSSSSEEEEEETT---------SCEEEEETTTCCEEEEECC--
T ss_pred ----CEEEEEECCCCcEEEEEc--CCCC--CEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCEEEEEecC--
Confidence 457888988775432211 1111 1112222 45566667643 3588899887653222111
Q ss_pred CCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CC
Q 006473 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KK 307 (643)
Q Consensus 230 ~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~ 307 (643)
. ..+ -.++... ++.+++.|+.++. +.+||+.+.+....-... .... -..+++. ++
T Consensus 148 ~--~~~--v~~~~~~~~~~~l~~~~~d~~----------------i~~wd~~~~~~~~~~~~~--~~~~-~~~~~~~~~~ 204 (312)
T 4ery_A 148 H--SDP--VSAVHFNRDGSLIVSSSYDGL----------------CRIWDTASGQCLKTLIDD--DNPP-VSFVKFSPNG 204 (312)
T ss_dssp C--SSC--EEEEEECTTSSEEEEEETTSC----------------EEEEETTTCCEEEEECCS--SCCC-EEEEEECTTS
T ss_pred C--CCc--EEEEEEcCCCCEEEEEeCCCc----------------EEEEECCCCceeeEEecc--CCCc-eEEEEECCCC
Confidence 0 111 1122222 5667788887665 778888776543322111 1111 1223333 56
Q ss_pred eEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 308 ~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
..++.|+.. +.|.+||+.+.+
T Consensus 205 ~~l~~~~~d--------------~~i~iwd~~~~~ 225 (312)
T 4ery_A 205 KYILAATLD--------------NTLKLWDYSKGK 225 (312)
T ss_dssp SEEEEEETT--------------TEEEEEETTTTE
T ss_pred CEEEEEcCC--------------CeEEEEECCCCc
Confidence 666666643 458999988764
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=96.06 E-value=0.41 Score=50.54 Aligned_cols=185 Identities=11% Similarity=0.131 Sum_probs=99.8
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~ 160 (643)
++.+++.|+. -+.+.+||..+.+-...-... .....++.+++.+++.|+.. ..+.+
T Consensus 142 d~~~l~~g~~---------dg~i~iwd~~~~~~~~~~~~h----~~~v~~l~~~~~~l~sg~~d-----------g~i~v 197 (435)
T 1p22_A 142 DDQKIVSGLR---------DNTIKIWDKNTLECKRILTGH----TGSVLCLQYDERVIITGSSD-----------STVRV 197 (435)
T ss_dssp CSSEEEEEES---------SSCEEEEESSSCCEEEEECCC----SSCEEEEECCSSEEEEEETT-----------SCEEE
T ss_pred CCCEEEEEeC---------CCeEEEEeCCCCeEEEEEcCC----CCcEEEEEECCCEEEEEcCC-----------CeEEE
Confidence 5777888873 247889999887654432221 11223334477777777753 35788
Q ss_pred EECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEe-ccCCCCCCCCCccce
Q 006473 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI-KPRFGSMWPSPRSGF 239 (643)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v-~~~~~~~~P~~R~~~ 239 (643)
||+.+.+....-. .....-.++.+.+.+++.|+.+ ..+.+||+.+..-... ... .......
T Consensus 198 wd~~~~~~~~~~~----~h~~~v~~l~~~~~~l~s~s~d---------g~i~vwd~~~~~~~~~~~~~-----~~~~~~v 259 (435)
T 1p22_A 198 WDVNTGEMLNTLI----HHCEAVLHLRFNNGMMVTCSKD---------RSIAVWDMASPTDITLRRVL-----VGHRAAV 259 (435)
T ss_dssp EESSSCCEEEEEC----CCCSCEEEEECCTTEEEEEETT---------SCEEEEECSSSSCCEEEEEE-----CCCSSCE
T ss_pred EECCCCcEEEEEc----CCCCcEEEEEEcCCEEEEeeCC---------CcEEEEeCCCCCCceeeeEe-----cCCCCcE
Confidence 8988876543221 1112223334455566667642 4578888876542211 111 1111112
Q ss_pred eEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccc
Q 006473 240 QFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDME 319 (643)
Q Consensus 240 s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~ 319 (643)
..+..++..++.|+.++. +.+||+.+..-...-.. .. ....++..++.+++.|+..
T Consensus 260 ~~~~~~~~~l~s~~~dg~----------------i~vwd~~~~~~~~~~~~----~~-~~v~~~~~~~~~l~~g~~d--- 315 (435)
T 1p22_A 260 NVVDFDDKYIVSASGDRT----------------IKVWNTSTCEFVRTLNG----HK-RGIACLQYRDRLVVSGSSD--- 315 (435)
T ss_dssp EEEEEETTEEEEEETTSE----------------EEEEETTTCCEEEEEEC----CS-SCEEEEEEETTEEEEEETT---
T ss_pred EEEEeCCCEEEEEeCCCe----------------EEEEECCcCcEEEEEcC----CC-CcEEEEEeCCCEEEEEeCC---
Confidence 223335666777776554 77888876643332211 11 1223333456677777753
Q ss_pred cCccccccccCCcEEEEECCCCc
Q 006473 320 MKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 320 ~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
+.|.+||+.+..
T Consensus 316 -----------g~i~iwd~~~~~ 327 (435)
T 1p22_A 316 -----------NTIRLWDIECGA 327 (435)
T ss_dssp -----------SCEEEEETTTCC
T ss_pred -----------CeEEEEECCCCC
Confidence 358999998754
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.63 Score=51.84 Aligned_cols=120 Identities=11% Similarity=0.099 Sum_probs=67.2
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEEC-CCC--cEEEecCCCC---CCC---ceeeEEEEECCEEEEEeCccCCCCCCc
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDV-EKQ--EWKVISSPNS---PPP---RSAHQAVSWKNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~-~~~--~W~~l~s~~~---P~p---Rs~ha~~~~~~~iyvfGG~~~~~~~~~ 151 (643)
++.||+.... .+.|+++|. .++ .|+.-..... +.+ ....+.++.++.||+...
T Consensus 62 ~g~vyv~~~~---------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--------- 123 (571)
T 2ad6_A 62 GDMMYVHSAF---------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA--------- 123 (571)
T ss_dssp TTEEEEECST---------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---------
T ss_pred CCEEEEEeCC---------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC---------
Confidence 7888887651 247999999 766 4886432210 000 011234556888888743
Q ss_pred ceecCeEEEEECCCC--cEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc--eEEec
Q 006473 152 FHHYKDFWMLDLKTN--QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIK 225 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~--~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~ 225 (643)
-..++.+|..++ .|+.-............+.++.++.||+-.+.... ..-..|+.||+.+.+ |+.-.
T Consensus 124 ---dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~----~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 124 ---NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAEL----GVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp ---TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGG----TCCCEEEEEETTTCCEEEEEES
T ss_pred ---CCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCcc----CCCCEEEEEECCCCcEEEEEcc
Confidence 146899999887 48754321000001112334568888765432110 013578999998754 87644
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.32 Score=50.82 Aligned_cols=182 Identities=15% Similarity=0.125 Sum_probs=89.0
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (643)
+.+.+||+.+.+....-... .....++.+++.+++.|+.. ..+.+||+.+..-......+ . .
T Consensus 156 g~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~-~--~ 217 (401)
T 4aez_A 156 GLVDIYDVESQTKLRTMAGH----QARVGCLSWNRHVLSSGSRS-----------GAIHHHDVRIANHQIGTLQG-H--S 217 (401)
T ss_dssp SCEEEEETTTCCEEEEECCC----SSCEEEEEEETTEEEEEETT-----------SEEEEEETTSSSCEEEEEEC-C--S
T ss_pred CeEEEEECcCCeEEEEecCC----CCceEEEEECCCEEEEEcCC-----------CCEEEEecccCcceeeEEcC-C--C
Confidence 36788888877644332211 11222333355666676642 45788888743321111111 1 1
Q ss_pred ceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcC--CCC
Q 006473 181 SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGG--YSK 256 (643)
Q Consensus 181 s~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG--~~~ 256 (643)
..-.++.+ ++.+++.|+.+ ..+.+||+.+..-...-.. . ..+....++...+..+++.|| .++
T Consensus 218 ~~v~~~~~~~~~~~l~s~~~d---------~~v~iwd~~~~~~~~~~~~-~---~~~v~~~~~~p~~~~ll~~~~gs~d~ 284 (401)
T 4aez_A 218 SEVCGLAWRSDGLQLASGGND---------NVVQIWDARSSIPKFTKTN-H---NAAVKAVAWCPWQSNLLATGGGTMDK 284 (401)
T ss_dssp SCEEEEEECTTSSEEEEEETT---------SCEEEEETTCSSEEEEECC-C---SSCCCEEEECTTSTTEEEEECCTTTC
T ss_pred CCeeEEEEcCCCCEEEEEeCC---------CeEEEccCCCCCccEEecC-C---cceEEEEEECCCCCCEEEEecCCCCC
Confidence 11122223 55677777742 4688899887543222111 0 112222222222556777775 333
Q ss_pred CCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCe-EEEeccccccccCccccccccCCcEE
Q 006473 257 EVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKR-ALLFGGVVDMEMKGDVIMSLFLNELY 334 (643)
Q Consensus 257 ~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~-iyvfGG~~~~~~~~~~~~~~~~ndl~ 334 (643)
.+.+||+.+..-...-.. ...-.++++. ++. +++.+|..+ +.|.
T Consensus 285 ----------------~i~i~d~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~g~~d-------------g~i~ 330 (401)
T 4aez_A 285 ----------------QIHFWNAATGARVNTVDA-----GSQVTSLIWSPHSKEIMSTHGFPD-------------NNLS 330 (401)
T ss_dssp ----------------EEEEEETTTCCEEEEEEC-----SSCEEEEEECSSSSEEEEEECTTT-------------CEEE
T ss_pred ----------------EEEEEECCCCCEEEEEeC-----CCcEEEEEECCCCCeEEEEeecCC-------------CcEE
Confidence 378889877654433221 1112233333 344 444434332 4589
Q ss_pred EEECCCCcEEEeE
Q 006473 335 GFQLDNHRWYPLE 347 (643)
Q Consensus 335 ~yd~~t~~W~~l~ 347 (643)
+||+.+.....+.
T Consensus 331 v~~~~~~~~~~~~ 343 (401)
T 4aez_A 331 IWSYSSSGLTKQV 343 (401)
T ss_dssp EEEEETTEEEEEE
T ss_pred EEecCCccceeEE
Confidence 9998887665544
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.55 Score=48.27 Aligned_cols=196 Identities=11% Similarity=0.022 Sum_probs=101.7
Q ss_pred eEEEEeccCCC-EEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEEC--CEEEEEeCccCCCC
Q 006473 72 CSLNINPLKET-ELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK--NYLYIFGGEFTSPN 148 (643)
Q Consensus 72 ~s~~~~~~~~~-~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~--~~iyvfGG~~~~~~ 148 (643)
.++...| ++ .+++.|+. -+.+.+||+.+.......... .....-.+++... +.+++.|+..
T Consensus 77 ~~~~~~~--~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d---- 140 (383)
T 3ei3_B 77 TSLEWHP--THPTTVAVGSK---------GGDIILWDYDVQNKTSFIQGM-GPGDAITGMKFNQFNTNQLFVSSIR---- 140 (383)
T ss_dssp EEEEECS--SCTTEEEEEEB---------TSCEEEEETTSTTCEEEECCC-STTCBEEEEEEETTEEEEEEEEETT----
T ss_pred EEEEECC--CCCCEEEEEcC---------CCeEEEEeCCCcccceeeecC-CcCCceeEEEeCCCCCCEEEEEeCC----
Confidence 3444554 44 68888873 246889999988776553321 1112222333333 3666666542
Q ss_pred CCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccC
Q 006473 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (643)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (643)
..+.+||+.+.....+.... .....-.+++.. ++.+++.|+. -..+.+||+....-..+...
T Consensus 141 -------~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~h 203 (383)
T 3ei3_B 141 -------GATTLRDFSGSVIQVFAKTD-SWDYWYCCVDVSVSRQMLATGDS---------TGRLLLLGLDGHEIFKEKLH 203 (383)
T ss_dssp -------TEEEEEETTSCEEEEEECCC-CSSCCEEEEEEETTTTEEEEEET---------TSEEEEEETTSCEEEEEECS
T ss_pred -------CEEEEEECCCCceEEEeccC-CCCCCeEEEEECCCCCEEEEECC---------CCCEEEEECCCCEEEEeccC
Confidence 45788899877766654311 111111222222 4566666664 24688888854433333221
Q ss_pred CCCCCCCCccceeEEEe-CCE-EEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCC----CeeEEeccCCCCCCCceeeE
Q 006473 228 FGSMWPSPRSGFQFFVY-QDE-VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT----WEWSKVKKIGMPPGPRAGFS 301 (643)
Q Consensus 228 ~~~~~P~~R~~~s~~~~-~~~-iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t----~~W~~l~~~g~~P~~R~g~s 301 (643)
.. .-.+++.. ++. +++.|+.++. +.+||+.+ ........ ....-.+
T Consensus 204 -----~~--~v~~~~~~~~~~~~l~s~~~d~~----------------i~iwd~~~~~~~~~~~~~~~-----~~~~v~~ 255 (383)
T 3ei3_B 204 -----KA--KVTHAEFNPRCDWLMATSSVDAT----------------VKLWDLRNIKDKNSYIAEMP-----HEKPVNA 255 (383)
T ss_dssp -----SS--CEEEEEECSSCTTEEEEEETTSE----------------EEEEEGGGCCSTTCEEEEEE-----CSSCEEE
T ss_pred -----CC--cEEEEEECCCCCCEEEEEeCCCE----------------EEEEeCCCCCcccceEEEec-----CCCceEE
Confidence 11 11222333 333 7778877654 77888765 22222211 1112223
Q ss_pred EEEE--CCeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 302 MCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 302 ~~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
+++. ++.+++.|+.. +.|.+||+.+..
T Consensus 256 ~~~s~~~~~~l~~~~~d--------------~~i~iwd~~~~~ 284 (383)
T 3ei3_B 256 AYFNPTDSTKLLTTDQR--------------NEIRVYSSYDWS 284 (383)
T ss_dssp EEECTTTSCEEEEEESS--------------SEEEEEETTBTT
T ss_pred EEEcCCCCCEEEEEcCC--------------CcEEEEECCCCc
Confidence 3333 46677777643 458999987653
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=95.69 E-value=0.75 Score=44.53 Aligned_cols=194 Identities=10% Similarity=0.056 Sum_probs=99.5
Q ss_pred CceEEEEeccCCCEEEE-EcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCC
Q 006473 70 SNCSLNINPLKETELIL-YGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSP 147 (643)
Q Consensus 70 ~~~s~~~~~~~~~~lyv-fGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~ 147 (643)
..+++++.+ ++.||+ ... ..+.|++|++.+.....+..... ..-++++.. ++.|||... .
T Consensus 25 ~p~~i~~~~--~g~l~v~~~~---------~~~~i~~~~~~~~~~~~~~~~~~---~~p~~i~~~~~g~l~v~~~-~--- 86 (270)
T 1rwi_B 25 SPSGVAVDS--AGNVYVTSEG---------MYGRVVKLATGSTGTTVLPFNGL---YQPQGLAVDGAGTVYVTDF-N--- 86 (270)
T ss_dssp CEEEEEECT--TCCEEEEECS---------SSCEEEEECC-----EECCCCSC---CSCCCEEECTTCCEEEEET-T---
T ss_pred CccceEECC--CCCEEEEccC---------CCCcEEEecCCCcccceEeeCCc---CCcceeEECCCCCEEEEcC-C---
Confidence 445566655 567888 433 12468889887766554432211 122334443 567888764 1
Q ss_pred CCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEecc
Q 006473 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (643)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (643)
..+++||+.+.....+...+ ...-+.+++. +++||+.... ...+++|+..+........
T Consensus 87 --------~~i~~~d~~~~~~~~~~~~~---~~~p~~i~~~~~g~l~v~~~~---------~~~i~~~~~~~~~~~~~~~ 146 (270)
T 1rwi_B 87 --------NRVVTLAAGSNNQTVLPFDG---LNYPEGLAVDTQGAVYVADRG---------NNRVVKLAAGSKTQTVLPF 146 (270)
T ss_dssp --------TEEEEECTTCSCCEECCCCS---CSSEEEEEECTTCCEEEEEGG---------GTEEEEECTTCCSCEECCC
T ss_pred --------CEEEEEeCCCceEeeeecCC---cCCCcceEECCCCCEEEEECC---------CCEEEEEECCCceeEeecc
Confidence 35889998877655443211 1222344443 5678876432 2468888776655443221
Q ss_pred CCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE
Q 006473 227 RFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (643)
Q Consensus 227 ~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~ 305 (643)
. . ...+ .+++.. ++.||+...... .+++|++.+..-......+ ...-.++++.
T Consensus 147 ~--~-~~~p---~~i~~~~~g~l~v~~~~~~----------------~i~~~~~~~~~~~~~~~~~----~~~p~~i~~d 200 (270)
T 1rwi_B 147 T--G-LNDP---DGVAVDNSGNVYVTDTDNN----------------RVVKLEAESNNQVVLPFTD----ITAPWGIAVD 200 (270)
T ss_dssp C--S-CCSC---CCEEECTTCCEEEEEGGGT----------------EEEEECTTTCCEEECCCSS----CCSEEEEEEC
T ss_pred c--c-CCCc---eeEEEeCCCCEEEEECCCC----------------EEEEEecCCCceEeecccC----CCCceEEEEC
Confidence 1 0 0111 233443 567887654332 3788888766543332111 1222344444
Q ss_pred -CCeEEEeccccccccCccccccccCCcEEEEECCCC
Q 006473 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (643)
Q Consensus 306 -~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (643)
++.||+.... .+.|++|++.+.
T Consensus 201 ~~g~l~v~~~~--------------~~~v~~~~~~~~ 223 (270)
T 1rwi_B 201 EAGTVYVTEHN--------------TNQVVKLLAGST 223 (270)
T ss_dssp TTCCEEEEETT--------------TSCEEEECTTCS
T ss_pred CCCCEEEEECC--------------CCcEEEEcCCCC
Confidence 4577776532 245889988664
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.39 Score=46.48 Aligned_cols=187 Identities=8% Similarity=0.029 Sum_probs=99.1
Q ss_pred eccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCC-CcEEEeccCCCC
Q 006473 100 YGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT-NQWEQLNLKGCP 177 (643)
Q Consensus 100 ~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t-~~W~~~~~~g~P 177 (643)
-..+++||+.+++...+... ...-.+++.. ++..+++++. ..++++|+.+ .....+.. .+
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~----~~~v~~~~~spdg~~l~~~~~------------~~i~~~d~~~~~~~~~~~~--~~ 82 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQT----PELFEAPNWSPDGKYLLLNSE------------GLLYRLSLAGDPSPEKVDT--GF 82 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEE----SSCCEEEEECTTSSEEEEEET------------TEEEEEESSSCCSCEECCC--TT
T ss_pred ceeEEEEeCCCCceeeeccC----CcceEeeEECCCCCEEEEEcC------------CeEEEEeCCCCCCceEecc--cc
Confidence 46899999999887766432 1112222222 4555566531 4689999998 77766543 12
Q ss_pred CCCceeEEEE-ECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCC
Q 006473 178 SPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGY 254 (643)
Q Consensus 178 ~~Rs~h~~~~-~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~ 254 (643)
....-..++. -++..+++++.... ....||.+++.+.....+... . . ...+... +..|++.++.
T Consensus 83 ~~~~~~~~~~spdg~~l~~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~-----~-~--~~~~~~spdg~~l~~~~~~ 149 (297)
T 2ojh_A 83 ATICNNDHGISPDGALYAISDKVEF-----GKSAIYLLPSTGGTPRLMTKN-----L-P--SYWHGWSPDGKSFTYCGIR 149 (297)
T ss_dssp CCCBCSCCEECTTSSEEEEEECTTT-----SSCEEEEEETTCCCCEECCSS-----S-S--EEEEEECTTSSEEEEEEEE
T ss_pred ccccccceEECCCCCEEEEEEeCCC-----CcceEEEEECCCCceEEeecC-----C-C--ccceEECCCCCEEEEEECC
Confidence 1111112222 25555555553221 146799999887765554433 1 1 2222222 3445545543
Q ss_pred CCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcE
Q 006473 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNEL 333 (643)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl 333 (643)
.+. ..+|.+++.+.....+... ...-.++++. +++.+++++..+ -...|
T Consensus 150 ~~~--------------~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~~-----------~~~~i 199 (297)
T 2ojh_A 150 DQV--------------FDIYSMDIDSGVETRLTHG-----EGRNDGPDYSPDGRWIYFNSSRT-----------GQMQI 199 (297)
T ss_dssp TTE--------------EEEEEEETTTCCEEECCCS-----SSCEEEEEECTTSSEEEEEECTT-----------SSCEE
T ss_pred CCc--------------eEEEEEECCCCcceEcccC-----CCccccceECCCCCEEEEEecCC-----------CCccE
Confidence 321 3688888877776655432 1112233333 555555544321 13568
Q ss_pred EEEECCCCcEEEeE
Q 006473 334 YGFQLDNHRWYPLE 347 (643)
Q Consensus 334 ~~yd~~t~~W~~l~ 347 (643)
|.+++.+.....+.
T Consensus 200 ~~~~~~~~~~~~~~ 213 (297)
T 2ojh_A 200 WRVRVDGSSVERIT 213 (297)
T ss_dssp EEEETTSSCEEECC
T ss_pred EEECCCCCCcEEEe
Confidence 88887776665544
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.7 Score=46.10 Aligned_cols=100 Identities=7% Similarity=0.053 Sum_probs=47.5
Q ss_pred ccEEEEECC--CCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCC-cEEEeccCC
Q 006473 101 GDLYRYDVE--KQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN-QWEQLNLKG 175 (643)
Q Consensus 101 ndv~~yd~~--~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~-~W~~~~~~g 175 (643)
+.+.+|++. +++++.+.....+. .-..++.. +..||+.+.. -..+.+||+... ....+..
T Consensus 60 ~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~-----------~~~i~~~d~~~~~~~~~~~~-- 124 (343)
T 1ri6_A 60 FRVLAYRIAPDDGALTFAAESALPG--SLTHISTDHQGQFVFVGSYN-----------AGNVSVTRLEDGLPVGVVDV-- 124 (343)
T ss_dssp TEEEEEEECTTTCCEEEEEEEECSS--CCSEEEECTTSSEEEEEETT-----------TTEEEEEEEETTEEEEEEEE--
T ss_pred CeEEEEEecCCCCceeeccccccCC--CCcEEEEcCCCCEEEEEecC-----------CCeEEEEECCCCcccccccc--
Confidence 356777776 77777554321111 12223332 3456666532 134667776322 2222222
Q ss_pred CCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCC-CceEEe
Q 006473 176 CPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FKWQEI 224 (643)
Q Consensus 176 ~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t-~~W~~v 224 (643)
.+....-+.+++. ++.||+.+.. ...+++||+.+ .+...+
T Consensus 125 ~~~~~~~~~~~~s~dg~~l~~~~~~---------~~~v~~~d~~~~~~~~~~ 167 (343)
T 1ri6_A 125 VEGLDGCHSANISPDNRTLWVPALK---------QDRICLFTVSDDGHLVAQ 167 (343)
T ss_dssp ECCCTTBCCCEECTTSSEEEEEEGG---------GTEEEEEEECTTSCEEEE
T ss_pred ccCCCCceEEEECCCCCEEEEecCC---------CCEEEEEEecCCCceeee
Confidence 1111122333333 3467665422 24688999887 666543
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=95.68 E-value=0.38 Score=47.83 Aligned_cols=194 Identities=14% Similarity=0.095 Sum_probs=98.7
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcE----EEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCC
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW----KVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSP 147 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W----~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~ 147 (643)
++...| ++.+++.|+ + +.+..|++.+... ..+.... ....-.+++.. ++.++++|+..
T Consensus 56 ~~~~~~--~~~~l~~~~---d-------g~i~iw~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d--- 118 (337)
T 1gxr_A 56 AVTISN--PTRHVYTGG---K-------GCVKVWDISHPGNKSPVSQLDCLN--RDNYIRSCKLLPDGCTLIVGGEA--- 118 (337)
T ss_dssp EEEECS--SSSEEEEEC---B-------SEEEEEETTSTTCCSCSEEEECSC--TTSBEEEEEECTTSSEEEEEESS---
T ss_pred EEEEec--CCcEEEEcC---C-------CeEEEEECCCCCceeeeecccccC--CCCcEEEEEEcCCCCEEEEEcCC---
Confidence 344454 567777766 1 3678888876542 1111101 11112222222 45566666532
Q ss_pred CCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEec
Q 006473 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (643)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (643)
..+.+||+.+........ .........++.+ ++.+++.|+.+ ..+.+||+.+.+....-
T Consensus 119 --------~~i~~~d~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~v~~~d~~~~~~~~~~ 179 (337)
T 1gxr_A 119 --------STLSIWDLAAPTPRIKAE--LTSSAPACYALAISPDSKVCFSCCSD---------GNIAVWDLHNQTLVRQF 179 (337)
T ss_dssp --------SEEEEEECCCC--EEEEE--EECSSSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTTEEEEEE
T ss_pred --------CcEEEEECCCCCcceeee--cccCCCceEEEEECCCCCEEEEEeCC---------CcEEEEeCCCCceeeee
Confidence 468889998877544332 1111111222233 45566666642 45888998876543322
Q ss_pred cCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEE
Q 006473 226 PRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV 304 (643)
Q Consensus 226 ~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~ 304 (643)
.. ....-.++... ++.+++.|+.++. +.+||+.+.+-...... ...-.++++
T Consensus 180 ~~------~~~~i~~~~~~~~~~~l~~~~~dg~----------------i~~~d~~~~~~~~~~~~-----~~~v~~~~~ 232 (337)
T 1gxr_A 180 QG------HTDGASCIDISNDGTKLWTGGLDNT----------------VRSWDLREGRQLQQHDF-----TSQIFSLGY 232 (337)
T ss_dssp CC------CSSCEEEEEECTTSSEEEEEETTSE----------------EEEEETTTTEEEEEEEC-----SSCEEEEEE
T ss_pred ec------ccCceEEEEECCCCCEEEEEecCCc----------------EEEEECCCCceEeeecC-----CCceEEEEE
Confidence 11 11111223333 5667777776544 78889877654333221 111233444
Q ss_pred E-CCeEEEeccccccccCccccccccCCcEEEEECCCCcE
Q 006473 305 H-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (643)
Q Consensus 305 ~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (643)
. ++.++++|+.. +.|.+||+.+..-
T Consensus 233 s~~~~~l~~~~~~--------------~~i~~~~~~~~~~ 258 (337)
T 1gxr_A 233 CPTGEWLAVGMES--------------SNVEVLHVNKPDK 258 (337)
T ss_dssp CTTSSEEEEEETT--------------SCEEEEETTSSCE
T ss_pred CCCCCEEEEEcCC--------------CcEEEEECCCCCe
Confidence 3 56777777643 3589999987653
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=95.63 E-value=0.63 Score=47.16 Aligned_cols=206 Identities=9% Similarity=-0.028 Sum_probs=97.4
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCc
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~ 151 (643)
++...| ++.+++.|+. + +.+.+||+.+.++....... .....-.+++.. ++.+++.|+..
T Consensus 57 ~~~~~~--~~~~l~~~~~--d-------g~i~vwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d------- 117 (372)
T 1k8k_C 57 GVDWAP--DSNRIVTCGT--D-------RNAYVWTLKGRTWKPTLVIL-RINRAARCVRWAPNEKKFAVGSGS------- 117 (372)
T ss_dssp EEEEET--TTTEEEEEET--T-------SCEEEEEEETTEEEEEEECC-CCSSCEEEEEECTTSSEEEEEETT-------
T ss_pred EEEEeC--CCCEEEEEcC--C-------CeEEEEECCCCeeeeeEEee-cCCCceeEEEECCCCCEEEEEeCC-------
Confidence 344455 5667777772 2 36888899888876543211 111122222222 45566666642
Q ss_pred ceecCeEEEEECCCCc-EEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCC----------
Q 006473 152 FHHYKDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF---------- 219 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~-W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~---------- 219 (643)
..+.+||+.+.. |........+....-.+++.. ++.+++.|+.+ ..+.+||+...
T Consensus 118 ----~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~~~d~~~~~~~~~~~~~~ 184 (372)
T 1k8k_C 118 ----RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD---------FKCRIFSAYIKEVEERPAPTP 184 (372)
T ss_dssp ----SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT---------SCEEEEECCCTTTSCCCCCBT
T ss_pred ----CEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC---------CCEEEEEcccccccccccccc
Confidence 234445444432 322222101111112222222 55666777642 35778885421
Q ss_pred ------ceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCC
Q 006473 220 ------KWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGM 292 (643)
Q Consensus 220 ------~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~ 292 (643)
.-..+.... .....-.+++.. ++.+++.|+.++. +.+||+.+.+-...-..
T Consensus 185 ~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~----------------i~i~d~~~~~~~~~~~~-- 242 (372)
T 1k8k_C 185 WGSKMPFGELMFESS----SSCGWVHGVCFSANGSRVAWVSHDST----------------VCLADADKKMAVATLAS-- 242 (372)
T ss_dssp TBSCCCTTCEEEECC----CCSSCEEEEEECSSSSEEEEEETTTE----------------EEEEEGGGTTEEEEEEC--
T ss_pred cccccchhhheEecC----CCCCeEEEEEECCCCCEEEEEeCCCE----------------EEEEECCCCceeEEEcc--
Confidence 111121110 011111122222 5556777766543 77888765543322211
Q ss_pred CCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCC--CcEEEeEec
Q 006473 293 PPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN--HRWYPLELR 349 (643)
Q Consensus 293 ~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t--~~W~~l~~~ 349 (643)
+ ...-.++++. ++.+++.| .. +.+.+|++.+ +.|..+...
T Consensus 243 -~-~~~v~~~~~~~~~~~l~~~-~d--------------~~i~i~~~~~~~~~~~~~~~~ 285 (372)
T 1k8k_C 243 -E-TLPLLAVTFITESSLVAAG-HD--------------CFPVLFTYDSAAGKLSFGGRL 285 (372)
T ss_dssp -S-SCCEEEEEEEETTEEEEEE-TT--------------SSCEEEEEETTTTEEEECCCC
T ss_pred -C-CCCeEEEEEecCCCEEEEE-eC--------------CeEEEEEccCcCceEEEeecc
Confidence 1 1112234443 56655555 32 3478888887 899887653
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=95.60 E-value=2.1 Score=42.68 Aligned_cols=68 Identities=18% Similarity=0.166 Sum_probs=41.0
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDF 158 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv 158 (643)
++.+|+.++. .+.|+++|+.+++....... +.....+.++.. +..+|+.+.. ...+
T Consensus 10 ~~~~~v~~~~---------~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~~~v~~~~-----------~~~i 67 (349)
T 1jmx_B 10 GHEYMIVTNY---------PNNLHVVDVASDTVYKSCVM--PDKFGPGTAMMAPDNRTAYVLNNH-----------YGDI 67 (349)
T ss_dssp TCEEEEEEET---------TTEEEEEETTTTEEEEEEEC--SSCCSSCEEEECTTSSEEEEEETT-----------TTEE
T ss_pred CCEEEEEeCC---------CCeEEEEECCCCcEEEEEec--CCCCCCceeEECCCCCEEEEEeCC-----------CCcE
Confidence 5778887772 25789999998876533221 110012233333 3468877642 2569
Q ss_pred EEEECCCCcEEE
Q 006473 159 WMLDLKTNQWEQ 170 (643)
Q Consensus 159 ~~yD~~t~~W~~ 170 (643)
++||+.+++...
T Consensus 68 ~~~d~~t~~~~~ 79 (349)
T 1jmx_B 68 YGIDLDTCKNTF 79 (349)
T ss_dssp EEEETTTTEEEE
T ss_pred EEEeCCCCcEEE
Confidence 999999887553
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.53 Score=47.42 Aligned_cols=128 Identities=12% Similarity=0.023 Sum_probs=69.7
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCC
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~ 150 (643)
.++++.+ ++.||+.+.. .+.|++||+.++++..+... ....-++++.. ++.||+.+.....
T Consensus 48 ~~~~~~~--~g~l~~~~~~---------~~~i~~~d~~~~~~~~~~~~---~~~~~~~i~~~~dg~l~v~~~~~~~---- 109 (333)
T 2dg1_A 48 EGLNFDR--QGQLFLLDVF---------EGNIFKINPETKEIKRPFVS---HKANPAAIKIHKDGRLFVCYLGDFK---- 109 (333)
T ss_dssp EEEEECT--TSCEEEEETT---------TCEEEEECTTTCCEEEEEEC---SSSSEEEEEECTTSCEEEEECTTSS----
T ss_pred cCcEECC--CCCEEEEECC---------CCEEEEEeCCCCcEEEEeeC---CCCCcceEEECCCCcEEEEeCCCCC----
Confidence 4455554 6778877652 24789999999988776421 11223334333 5678887543211
Q ss_pred cceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEe
Q 006473 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (643)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (643)
....+++||+.+.....+... ......-..+++. ++.||+....... ......||+||+.+.+...+
T Consensus 110 ---~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~---~~~~~~l~~~~~~~~~~~~~ 177 (333)
T 2dg1_A 110 ---STGGIFAATENGDNLQDIIED-LSTAYCIDDMVFDSKGGFYFTDFRGYS---TNPLGGVYYVSPDFRTVTPI 177 (333)
T ss_dssp ---SCCEEEEECTTSCSCEEEECS-SSSCCCEEEEEECTTSCEEEEECCCBT---TBCCEEEEEECTTSCCEEEE
T ss_pred ---CCceEEEEeCCCCEEEEEEcc-CccCCcccceEECCCCCEEEEeccccc---cCCCceEEEEeCCCCEEEEe
Confidence 124689999988876533221 1111122222332 5677774321100 01135789999887666554
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.027 Score=58.17 Aligned_cols=141 Identities=11% Similarity=0.165 Sum_probs=66.4
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDF 158 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv 158 (643)
++.+++.|+. + +.+.+|++.++.|..+.... ........+.+ ++.+++.|+.. ..+
T Consensus 22 ~g~~l~~~~~--d-------~~i~iw~~~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~s~d-----------~~v 79 (377)
T 3dwl_C 22 QRTEFVTTTA--T-------NQVELYEQDGNGWKHARTFS--DHDKIVTCVDWAPKSNRIVTCSQD-----------RNA 79 (377)
T ss_dssp SSSEEECCCS--S-------SCBCEEEEETTEEEECCCBC--CCSSCEEEEEECTTTCCEEEEETT-----------SSE
T ss_pred CCCEEEEecC--C-------CEEEEEEccCCceEEEEEEe--cCCceEEEEEEeCCCCEEEEEeCC-----------CeE
Confidence 5678888873 2 35778888888888765432 11122222333 45667777642 347
Q ss_pred EEEECCCCc-EEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCc-eEEeccCCCCCCCC
Q 006473 159 WMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK-WQEIKPRFGSMWPS 234 (643)
Q Consensus 159 ~~yD~~t~~-W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~-W~~v~~~~~~~~P~ 234 (643)
.+||+.+.. |..+.. .........++.+ ++.+++.|+.+ ..+.+||+.+.. |..+..... +.
T Consensus 80 ~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~---~h 145 (377)
T 3dwl_C 80 YVYEKRPDGTWKQTLV--LLRLNRAATFVRWSPNEDKFAVGSGA---------RVISVCYFEQENDWWVSKHLKR---PL 145 (377)
T ss_dssp EEC------CCCCEEE--CCCCSSCEEEEECCTTSSCCEEEESS---------SCEEECCC-----CCCCEEECS---SC
T ss_pred EEEEcCCCCceeeeeE--ecccCCceEEEEECCCCCEEEEEecC---------CeEEEEEECCcccceeeeEeec---cc
Confidence 788887766 443322 1111112222333 45666677643 346777776654 322222210 11
Q ss_pred CccceeEEEe-CCEEEEEcCCCCC
Q 006473 235 PRSGFQFFVY-QDEVFLYGGYSKE 257 (643)
Q Consensus 235 ~R~~~s~~~~-~~~iyv~GG~~~~ 257 (643)
...-.+++.. ++.+++.|+.++.
T Consensus 146 ~~~v~~~~~~~~~~~l~~~~~d~~ 169 (377)
T 3dwl_C 146 RSTILSLDWHPNNVLLAAGCADRK 169 (377)
T ss_dssp CSCEEEEEECTTSSEEEEEESSSC
T ss_pred CCCeEEEEEcCCCCEEEEEeCCCE
Confidence 2222233333 5667788877654
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.74 Score=51.91 Aligned_cols=195 Identities=8% Similarity=0.025 Sum_probs=99.9
Q ss_pred eccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCC-cEEEeccCCC
Q 006473 100 YGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN-QWEQLNLKGC 176 (643)
Q Consensus 100 ~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~-~W~~~~~~g~ 176 (643)
...+++||+.+.+...+.... ........+.+ +++.++++...... ....++++|+.+. .+..+.....
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~------~~~~v~~~d~~~g~~~~~~~~~~~ 305 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTGE--PKEKFLTNLSWSPDENILYVAEVNRAQ------NECKVNAYDAETGRFVRTLFVETD 305 (706)
T ss_dssp EEEEEEEETTTTEEEECCCCS--CTTCEEEEEEECTTSSEEEEEEECTTS------CEEEEEEEETTTCCEEEEEEEEEC
T ss_pred eeEEEEEECCCCceEeeccCC--CCceeEeeEEEECCCCEEEEEEeCCCC------CeeEEEEEECCCCceeeEEEEccC
Confidence 357999999998877665321 11122223333 44433443322111 1357999999998 7766543111
Q ss_pred CCCCc-eeEEEE-E--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccc-eeEEEeCCEEEEE
Q 006473 177 PSPRS-GHRMVL-Y--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG-FQFFVYQDEVFLY 251 (643)
Q Consensus 177 P~~Rs-~h~~~~-~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~-~s~~~~~~~iyv~ 251 (643)
+.... ...++. - ++++++.+...+ ...||.++........+... ...... .++...+..||+.
T Consensus 306 ~~~~~~~~~~~~sp~~dg~~l~~~~~~g-------~~~l~~~~~~~~~~~~l~~~-----~~~v~~~~~~spdg~~l~~~ 373 (706)
T 2z3z_A 306 KHYVEPLHPLTFLPGSNNQFIWQSRRDG-------WNHLYLYDTTGRLIRQVTKG-----EWEVTNFAGFDPKGTRLYFE 373 (706)
T ss_dssp SSCCCCCSCCEECTTCSSEEEEEECTTS-------SCEEEEEETTSCEEEECCCS-----SSCEEEEEEECTTSSEEEEE
T ss_pred CCeECccCCceeecCCCCEEEEEEccCC-------ccEEEEEECCCCEEEecCCC-----CeEEEeeeEEcCCCCEEEEE
Confidence 11000 011222 2 567555543321 35788888766666655432 122221 1111124456666
Q ss_pred cCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccC
Q 006473 252 GGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFL 330 (643)
Q Consensus 252 GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ 330 (643)
+.... .....+|.+|+.+.....+... . ..+++++- +++.+++..... ...
T Consensus 374 ~~~~~------------~~~~~l~~~d~~~~~~~~l~~~-----~-~~~~~~~spdg~~l~~~~~~~----------~~p 425 (706)
T 2z3z_A 374 STEAS------------PLERHFYCIDIKGGKTKDLTPE-----S-GMHRTQLSPDGSAIIDIFQSP----------TVP 425 (706)
T ss_dssp ESSSC------------TTCBEEEEEETTCCCCEESCCS-----S-SEEEEEECTTSSEEEEEEECS----------SCS
T ss_pred ecCCC------------CceEEEEEEEcCCCCceeccCC-----C-ceEEEEECCCCCEEEEEecCC----------CCC
Confidence 54432 1124589999888776665421 1 12333333 566666664322 124
Q ss_pred CcEEEEECCCCc
Q 006473 331 NELYGFQLDNHR 342 (643)
Q Consensus 331 ndl~~yd~~t~~ 342 (643)
..++++|+.+.+
T Consensus 426 ~~i~l~d~~~~~ 437 (706)
T 2z3z_A 426 RKVTVTNIGKGS 437 (706)
T ss_dssp CEEEEEESSSCE
T ss_pred cEEEEEECCCCe
Confidence 569999998877
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.78 Score=48.49 Aligned_cols=186 Identities=9% Similarity=0.028 Sum_probs=98.7
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (643)
..|+++|+....-+.+.... . ....+.+ ++..+++++.... ...++++|+.+++...+.. .+.
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~--~---~v~~~~~Spdg~~la~~s~~~~--------~~~i~~~d~~tg~~~~l~~--~~~ 223 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSP--Q---PLMSPAWSPDGSKLAYVTFESG--------RSALVIQTLANGAVRQVAS--FPR 223 (415)
T ss_dssp EEEEEEETTSCSCEEEEEES--S---CEEEEEECTTSSEEEEEECTTS--------SCEEEEEETTTCCEEEEEC--CSS
T ss_pred ceEEEEcCCCCCCEEEeCCC--C---cceeeEEcCCCCEEEEEEecCC--------CcEEEEEECCCCcEEEeec--CCC
Confidence 57888898766555553211 1 1122223 4555555553221 2579999999988776643 121
Q ss_pred CCceeEEEEE--CC-EEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCC
Q 006473 179 PRSGHRMVLY--KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGY 254 (643)
Q Consensus 179 ~Rs~h~~~~~--~~-~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~ 254 (643)
...++.+ ++ +|++.+...+ ...||+||+.+.+...+... +.. ..++... ++..+++++.
T Consensus 224 ---~~~~~~~spdg~~la~~~~~~g-------~~~i~~~d~~~~~~~~l~~~-----~~~--~~~~~~spdg~~l~~~s~ 286 (415)
T 2hqs_A 224 ---HNGAPAFSPDGSKLAFALSKTG-------SLNLYVMDLASGQIRQVTDG-----RSN--NTEPTWFPDSQNLAFTSD 286 (415)
T ss_dssp ---CEEEEEECTTSSEEEEEECTTS-------SCEEEEEETTTCCEEECCCC-----SSC--EEEEEECTTSSEEEEEEC
T ss_pred ---cccCEEEcCCCCEEEEEEecCC-------CceEEEEECCCCCEEeCcCC-----CCc--ccceEECCCCCEEEEEEC
Confidence 1223333 44 4554443221 35699999998876655433 111 1122222 4444444432
Q ss_pred CCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcE
Q 006473 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNEL 333 (643)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl 333 (643)
... ...+|.+|+.+..-..+... .....++++. +++.+++++..+ -...|
T Consensus 287 ~~g-------------~~~i~~~d~~~~~~~~l~~~-----~~~~~~~~~spdG~~l~~~~~~~-----------g~~~i 337 (415)
T 2hqs_A 287 QAG-------------RPQVYKVNINGGAPQRITWE-----GSQNQDADVSSDGKFMVMVSSNG-----------GQQHI 337 (415)
T ss_dssp TTS-------------SCEEEEEETTSSCCEECCCS-----SSEEEEEEECTTSSEEEEEEECS-----------SCEEE
T ss_pred CCC-------------CcEEEEEECCCCCEEEEecC-----CCcccCeEECCCCCEEEEEECcC-----------CceEE
Confidence 111 13589999988765544321 2222233333 566666665432 02469
Q ss_pred EEEECCCCcEEEeE
Q 006473 334 YGFQLDNHRWYPLE 347 (643)
Q Consensus 334 ~~yd~~t~~W~~l~ 347 (643)
++||+.+.....+.
T Consensus 338 ~~~d~~~~~~~~l~ 351 (415)
T 2hqs_A 338 AKQDLATGGVQVLS 351 (415)
T ss_dssp EEEETTTCCEEECC
T ss_pred EEEECCCCCEEEec
Confidence 99999998876544
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.098 Score=55.62 Aligned_cols=115 Identities=11% Similarity=0.082 Sum_probs=60.5
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCC
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQE 150 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~ 150 (643)
++...|. ++.+++.|+. + +.|.+||+.+.....+.... .....-.+++.. ++.+++.|+..
T Consensus 124 ~l~~~P~-~~~~lasGs~--d-------g~i~lWd~~~~~~~~~~~~~-gH~~~V~~l~f~p~~~~~l~s~s~D------ 186 (435)
T 4e54_B 124 SLAWHPT-HPSTVAVGSK--G-------GDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYASSME------ 186 (435)
T ss_dssp EEEECSS-CTTCEEEEET--T-------SCEEEECSSCCSCCEEECCC-SSSCCCCEEEECSSCTTEEEEECSS------
T ss_pred EEEEeCC-CCCEEEEEeC--C-------CEEEEEECCCCCceeEEEcc-CCCCCEEEEEEeCCCCCEEEEEeCC------
Confidence 4555554 3568888883 2 36888888776544332211 011111223322 45566777653
Q ss_pred cceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCC
Q 006473 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (643)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~ 219 (643)
..+.++|+.++....+.... .......++... ++.+++.|+.+ ..|.+||+...
T Consensus 187 -----~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~d---------g~i~~wd~~~~ 241 (435)
T 4e54_B 187 -----GTTRLQDFKGNILRVFASSD-TINIWFCSLDVSASSRMVVTGDNV---------GNVILLNMDGK 241 (435)
T ss_dssp -----SCEEEEETTSCEEEEEECCS-SCSCCCCCEEEETTTTEEEEECSS---------SBEEEEESSSC
T ss_pred -----CEEEEeeccCCceeEEeccC-CCCccEEEEEECCCCCEEEEEeCC---------CcEeeeccCcc
Confidence 24677898887665554311 111112223332 56677777743 35778887653
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=95.32 E-value=2.9 Score=47.28 Aligned_cols=119 Identities=15% Similarity=0.164 Sum_probs=67.5
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCC--cEEEecCCCCC---CC---ceeeEEEEECCEEEEEeCccCCCCCCcc
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSP---PP---RSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~~P---~p---Rs~ha~~~~~~~iyvfGG~~~~~~~~~~ 152 (643)
++.||+... .+.|+.+|..++ .|+.-...... .. ....+.++.++.||+...
T Consensus 66 ~g~vyv~~~----------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---------- 125 (668)
T 1kv9_A 66 DGVIYTSMS----------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL---------- 125 (668)
T ss_dssp TTEEEEEEG----------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT----------
T ss_pred CCEEEEECC----------CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC----------
Confidence 788888765 247999998876 48864321100 00 011233456888887542
Q ss_pred eecCeEEEEECCCCc--EEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc--eEEec
Q 006473 153 HHYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIK 225 (643)
Q Consensus 153 ~~~~dv~~yD~~t~~--W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~ 225 (643)
-..++.||..|++ |+.-............+.++.++.||+-.+.... .....|+.||+.+.+ |+.-.
T Consensus 126 --dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~----~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 126 --DGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEY----GVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp --TSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTT----CCBCEEEEEETTTCCEEEEEES
T ss_pred --CCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCc----CCCCEEEEEECCCCcEEEEecc
Confidence 1468999998875 8765421111111222345668888774322110 124579999998765 87643
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.30 E-value=1.8 Score=44.38 Aligned_cols=193 Identities=9% Similarity=-0.034 Sum_probs=96.0
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCc
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~ 151 (643)
++...| ++.+++.|+. + +.+.+|+........+... ...-.+++.. ++..++.|+..
T Consensus 113 ~~~~s~--~~~~l~~~~~--d-------g~i~i~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d------- 170 (425)
T 1r5m_A 113 CLAWSH--DGNSIVTGVE--N-------GELRLWNKTGALLNVLNFH----RAPIVSVKWNKDGTHIISMDVE------- 170 (425)
T ss_dssp EEEECT--TSSEEEEEET--T-------SCEEEEETTSCEEEEECCC----CSCEEEEEECTTSSEEEEEETT-------
T ss_pred EEEEcC--CCCEEEEEeC--C-------CeEEEEeCCCCeeeeccCC----CccEEEEEECCCCCEEEEEecC-------
Confidence 344444 5677777772 2 3678888555544444321 1112223332 45555566542
Q ss_pred ceecCeEEEEECCCCcEEEeccCCCCCCC--------------ceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcC
Q 006473 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPR--------------SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~R--------------s~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~ 217 (643)
..+.+||+.+......-. .+... .-.+++...+..+++|+. -..+.+||+.
T Consensus 171 ----~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~g~i~~~d~~ 235 (425)
T 1r5m_A 171 ----NVTILWNVISGTVMQHFE--LKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGP---------KGAIFVYQIT 235 (425)
T ss_dssp ----CCEEEEETTTTEEEEEEC--CC---------------CCCBSCCEEEETTEEEEECG---------GGCEEEEETT
T ss_pred ----CeEEEEECCCCcEEEEee--ccccCccceeeccccCCcceeeEEEEcCCCEEEEEcC---------CCeEEEEEcC
Confidence 357788888776543322 11111 022233333344566664 2468899988
Q ss_pred CCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCC
Q 006473 218 QFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGP 296 (643)
Q Consensus 218 t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~ 296 (643)
+..-...-.. ....-.+++.. ++.+++.|+.++. +.+||+.+......-. ...
T Consensus 236 ~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~----------------i~i~d~~~~~~~~~~~----~~~ 289 (425)
T 1r5m_A 236 EKTPTGKLIG------HHGPISVLEFNDTNKLLLSASDDGT----------------LRIWHGGNGNSQNCFY----GHS 289 (425)
T ss_dssp CSSCSEEECC------CSSCEEEEEEETTTTEEEEEETTSC----------------EEEECSSSBSCSEEEC----CCS
T ss_pred CCceeeeecc------CCCceEEEEECCCCCEEEEEcCCCE----------------EEEEECCCCccceEec----CCC
Confidence 7543222111 11111223333 5567777776654 7788876653322211 112
Q ss_pred ceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 297 RAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 297 R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
..-.++++..+.+++.|+.. ..|.+||+.+.+
T Consensus 290 ~~i~~~~~~~~~~l~~~~~d--------------~~i~i~d~~~~~ 321 (425)
T 1r5m_A 290 QSIVSASWVGDDKVISCSMD--------------GSVRLWSLKQNT 321 (425)
T ss_dssp SCEEEEEEETTTEEEEEETT--------------SEEEEEETTTTE
T ss_pred ccEEEEEECCCCEEEEEeCC--------------CcEEEEECCCCc
Confidence 22344555533366666543 358899987764
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=95.30 E-value=2.9 Score=42.48 Aligned_cols=174 Identities=14% Similarity=0.090 Sum_probs=88.9
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~ 160 (643)
.+.+|++|- . .-+++..-...+|+.+.....+......++...++.+|+.|.. ..+++
T Consensus 46 ~~~~~~~G~---~-------g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~------------g~i~~ 103 (327)
T 2xbg_A 46 RHHGWLVGV---N-------ATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEP------------PIMLH 103 (327)
T ss_dssp SSCEEEEET---T-------TEEEEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEET------------TEEEE
T ss_pred CCcEEEEcC---C-------CeEEEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECC------------CeEEE
Confidence 567888653 1 2355543334589988643211122334444457788887521 23444
Q ss_pred EECCCCcEEEeccCCCCCCCceeEEEE-ECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccce
Q 006473 161 LDLKTNQWEQLNLKGCPSPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGF 239 (643)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rs~h~~~~-~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~ 239 (643)
-.-.-.+|+.+.... +.+-..+.++. -++.+|+.|.. ..+++-.-.-.+|+.+... .+..-+
T Consensus 104 S~DgG~tW~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~----------g~v~~S~DgG~tW~~~~~~------~~~~~~ 166 (327)
T 2xbg_A 104 TTDGGQSWSQIPLDP-KLPGSPRLIKALGNGSAEMITNV----------GAIYRTKDSGKNWQALVQE------AIGVMR 166 (327)
T ss_dssp ESSTTSSCEECCCCT-TCSSCEEEEEEEETTEEEEEETT----------CCEEEESSTTSSEEEEECS------CCCCEE
T ss_pred ECCCCCCceECcccc-CCCCCeEEEEEECCCCEEEEeCC----------ccEEEEcCCCCCCEEeecC------CCcceE
Confidence 222346899986521 11112233333 36788877641 1244332234679998754 122334
Q ss_pred eEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEe-CCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEecc
Q 006473 240 QFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLD-PRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGG 314 (643)
Q Consensus 240 s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd-~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG 314 (643)
.++.. ++.+|++|- .+. +++-. ....+|+.+.. +.+...+.+++. ++.+|+++.
T Consensus 167 ~~~~~~~~~~~~~g~-~G~----------------~~~S~d~gG~tW~~~~~----~~~~~~~~~~~~~~g~~~~~~~ 223 (327)
T 2xbg_A 167 NLNRSPSGEYVAVSS-RGS----------------FYSTWEPGQTAWEPHNR----TTSRRLHNMGFTPDGRLWMIVN 223 (327)
T ss_dssp EEEECTTSCEEEEET-TSS----------------EEEEECTTCSSCEEEEC----CSSSCEEEEEECTTSCEEEEET
T ss_pred EEEEcCCCcEEEEEC-CCc----------------EEEEeCCCCCceeECCC----CCCCccceeEECCCCCEEEEeC
Confidence 44444 556666653 222 44433 23678999853 233444555543 567777663
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.29 E-value=1.8 Score=43.34 Aligned_cols=206 Identities=7% Similarity=-0.038 Sum_probs=97.6
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCc
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~ 151 (643)
+++..| ++.+++.|+. -+.+.+||+.+.+-...-... ...-.+++.. ++.+++.|+..
T Consensus 37 ~~~~s~--~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~s~~~d------- 95 (369)
T 3zwl_B 37 QVKYNK--EGDLLFSCSK---------DSSASVWYSLNGERLGTLDGH---TGTIWSIDVDCFTKYCVTGSAD------- 95 (369)
T ss_dssp EEEECT--TSCEEEEEES---------SSCEEEEETTTCCEEEEECCC---SSCEEEEEECTTSSEEEEEETT-------
T ss_pred EEEEcC--CCCEEEEEeC---------CCEEEEEeCCCchhhhhhhhc---CCcEEEEEEcCCCCEEEEEeCC-------
Confidence 344444 5677777772 246888998877654332211 1111222222 45566666642
Q ss_pred ceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCc----eEEecc
Q 006473 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK----WQEIKP 226 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~----W~~v~~ 226 (643)
..+.+||+.+.+....-. .+.+ -.+++.. ++..++.++..... ....+.+||+.+.. +.....
T Consensus 96 ----g~i~iwd~~~~~~~~~~~--~~~~--v~~~~~~~~~~~l~~~~~~~~~----~~g~i~~~d~~~~~~~~~~~~~~~ 163 (369)
T 3zwl_B 96 ----YSIKLWDVSNGQCVATWK--SPVP--VKRVEFSPCGNYFLAILDNVMK----NPGSINIYEIERDSATHELTKVSE 163 (369)
T ss_dssp ----TEEEEEETTTCCEEEEEE--CSSC--EEEEEECTTSSEEEEEECCBTT----BCCEEEEEEEEECTTTCCEEEECS
T ss_pred ----CeEEEEECCCCcEEEEee--cCCC--eEEEEEccCCCEEEEecCCccC----CCCEEEEEEecCCccceeeccccc
Confidence 458889998876544322 1111 1222222 44555555532111 12456677665432 221111
Q ss_pred CCCCCCC--CCc-cceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCC-CeeEEeccCCCCCCCceeeE
Q 006473 227 RFGSMWP--SPR-SGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT-WEWSKVKKIGMPPGPRAGFS 301 (643)
Q Consensus 227 ~~~~~~P--~~R-~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t-~~W~~l~~~g~~P~~R~g~s 301 (643)
.+..... ... .-.+++.. ++.+++.|+.++. +.+||+.+ ..-...-.. ....-.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~----------------i~i~d~~~~~~~~~~~~~----~~~~v~~ 223 (369)
T 3zwl_B 164 EPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGK----------------ISKYDVSNNYEYVDSIDL----HEKSISD 223 (369)
T ss_dssp SCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSE----------------EEEEETTTTTEEEEEEEC----CSSCEEE
T ss_pred ceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCE----------------EEEEECCCCcEeEEEEec----CCCceeE
Confidence 1000000 000 11122222 5566777766544 78899876 332222111 1112233
Q ss_pred EEEE-CCeEEEeccccccccCccccccccCCcEEEEECCCCcEEE
Q 006473 302 MCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (643)
Q Consensus 302 ~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (643)
+++. ++.+++.|+.. +.|.+||+.+.+...
T Consensus 224 ~~~~~~~~~l~~~~~d--------------~~i~v~d~~~~~~~~ 254 (369)
T 3zwl_B 224 MQFSPDLTYFITSSRD--------------TNSFLVDVSTLQVLK 254 (369)
T ss_dssp EEECTTSSEEEEEETT--------------SEEEEEETTTCCEEE
T ss_pred EEECCCCCEEEEecCC--------------ceEEEEECCCCceee
Confidence 4443 56667777643 358999998765443
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=1.9 Score=49.72 Aligned_cols=183 Identities=15% Similarity=0.213 Sum_probs=97.9
Q ss_pred cEEEEECCCCcEEEecCCCCCCCce-eeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC
Q 006473 102 DLYRYDVEKQEWKVISSPNSPPPRS-AHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (643)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~pRs-~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (643)
-+++||+.+.+...+..... .+.. -.+++.. ++.|||... +.+++||..++++..+.. +.+..
T Consensus 108 Gl~~yd~~~~~f~~~~~~~~-~~~~~i~~i~~d~~g~lwi~t~-------------~gl~~~~~~~~~~~~~~~-~~~~~ 172 (795)
T 4a2l_A 108 GLSRYDEEKDIFQNFFYEKN-GKHLQVNGIEEISPEQLLISTP-------------EGLIMFDIKESKFIDDSF-STAMH 172 (795)
T ss_dssp CEEEEETTTTEEEEECCEET-TEECCCCEEEEEETTEEEEEET-------------TEEEEEETTTTEEECSSS-CHHHH
T ss_pred chheeCCCCCeEEecccccc-CCCceEEEEEECCCCCEEEEEC-------------CceEEEECCCCEEEeccC-CCCCC
Confidence 57899999998887653210 1111 1223233 778887542 458899999888876543 11111
Q ss_pred CceeEEEE-ECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEE-eCCEEEEEcCCCCC
Q 006473 180 RSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFV-YQDEVFLYGGYSKE 257 (643)
Q Consensus 180 Rs~h~~~~-~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~-~~~~iyv~GG~~~~ 257 (643)
..-.+++. -++.||| |.. ...|++|++.+.++..+... +....-.+++. .++.|+|.. ...
T Consensus 173 ~~i~~i~~d~~g~lwi-gt~---------~~Gl~~~~~~~~~~~~~~~~-----~~~~~i~~i~~d~~g~lwigt-~~~- 235 (795)
T 4a2l_A 173 KTIASTLYRQGDQIYI-GTS---------TDGLYTYSITQKTFEKVIPI-----LGTKQIQAILQQSPTRIWVAT-EGA- 235 (795)
T ss_dssp TCCEEEEEEETTEEEE-EES---------SSCEEEEETTTCCEEECC---------CCCEEEEEEEETTEEEEEE-BSS-
T ss_pred cceEEEEECCCCCEEE-EEC---------CCCEEEEeCCCCeEEEecCC-----CCCCeeEEEEEcCCCCEEEEE-CCC-
Confidence 10112222 3788887 321 13588999999888776432 11111122332 267777642 221
Q ss_pred CCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCC---CceeeEEEEE-CCeEEEeccccccccCccccccccCCcE
Q 006473 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPG---PRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNEL 333 (643)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~---~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl 333 (643)
-+++||+.+.++.........|. ...-.+++.. ++.|+| |.. +-|
T Consensus 236 ---------------Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~---------------~Gl 284 (795)
T 4a2l_A 236 ---------------GLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTF---------------NDL 284 (795)
T ss_dssp ---------------CEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EES---------------SCE
T ss_pred ---------------CeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeC---------------Chh
Confidence 28899999988887754211111 1122233333 456665 321 126
Q ss_pred EEEECCCCcEEEeE
Q 006473 334 YGFQLDNHRWYPLE 347 (643)
Q Consensus 334 ~~yd~~t~~W~~l~ 347 (643)
++||+.+..|..+.
T Consensus 285 ~~~~~~~~~~~~~~ 298 (795)
T 4a2l_A 285 NIYHEGTDSFASYS 298 (795)
T ss_dssp EEEETTTTEEEEEC
T ss_pred heEcCCCCeEEEEe
Confidence 77777777666654
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.25 E-value=4 Score=46.32 Aligned_cols=118 Identities=16% Similarity=0.187 Sum_probs=67.2
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCC--cEEEecCCCCC---CC---ceeeEEEEECCEEEEEeCccCCCCCCcc
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSP---PP---RSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~~P---~p---Rs~ha~~~~~~~iyvfGG~~~~~~~~~~ 152 (643)
++.||+.+. .+.|+++|..++ .|+.-...... .. ....+.++.++.||+...
T Consensus 70 ~g~vyv~~~----------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~---------- 129 (689)
T 1yiq_A 70 DGVMYTTGP----------FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL---------- 129 (689)
T ss_dssp TTEEEEECG----------GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT----------
T ss_pred CCEEEEEcC----------CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc----------
Confidence 788888665 247999999876 48854321100 00 011233456888887642
Q ss_pred eecCeEEEEECCCCc--EEEecc-CCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc--eEEe
Q 006473 153 HHYKDFWMLDLKTNQ--WEQLNL-KGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEI 224 (643)
Q Consensus 153 ~~~~dv~~yD~~t~~--W~~~~~-~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v 224 (643)
-..++.+|..|++ |+.-.. ..........+.++.++.||+-.+.... ..-..|+.||..+.+ |+.-
T Consensus 130 --dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~----~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 130 --DGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEF----GVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp --TSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTT----CCBCEEEEEETTTCCEEEEEE
T ss_pred --CCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCcc----CCCCEEEEEECCCCcEEEEec
Confidence 1468899998874 876532 1001111122335668888774322111 124579999998866 8765
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.2 Score=57.66 Aligned_cols=106 Identities=9% Similarity=0.165 Sum_probs=61.0
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--C--CEEEEEeCccCCCCCCcceecC
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--K--NYLYIFGGEFTSPNQERFHHYK 156 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~--~~iyvfGG~~~~~~~~~~~~~~ 156 (643)
++.+++.||. + +.+.+||+....+..+.... .......++.+ . +.+++.|+.. .
T Consensus 20 dg~~latg~~--d-------g~I~vwd~~~~~~~~~~~l~--~h~~~V~~l~~s~~~~~~~l~s~s~D-----------g 77 (753)
T 3jro_A 20 YGKRLATCSS--D-------KTIKIFEVEGETHKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYD-----------G 77 (753)
T ss_dssp SSCCEEEEET--T-------TEEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCTTSCSEEEEEETT-----------S
T ss_pred CCCeEEEEEC--C-------CcEEEEecCCCCCccceecc--CCcCceEEEEecCCCCCCEEEEEeCC-----------C
Confidence 5667777772 2 36788888877777654322 11222223333 2 6677777753 3
Q ss_pred eEEEEECCCCcEEEeccCCCCCCCceeEEEEE--C--CEEEEEeeeecCCCceeeeccEEEEEcCCC
Q 006473 157 DFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--K--HKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (643)
Q Consensus 157 dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~--~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~ 219 (643)
.+.+||+.++.|..+... ......-.++.+ + +.+++.||.+ ..+.+||+.+.
T Consensus 78 ~I~vwd~~~~~~~~~~~~--~~h~~~V~~v~~sp~~~~~~l~sgs~d---------g~I~vwdl~~~ 133 (753)
T 3jro_A 78 KVLIWKEENGRWSQIAVH--AVHSASVNSVQWAPHEYGPLLLVASSD---------GKVSVVEFKEN 133 (753)
T ss_dssp CEEEEEEETTEEEEEEEE--CCCSSCEEEEEECCGGGCSEEEEEETT---------SEEEEEECCSS
T ss_pred eEEEEECCCCcccccccc--cCCCCCeEEEEECCCCCCCEEEEEeCC---------CcEEEEEeecC
Confidence 477888888887766542 222222233333 3 6677777743 35778887665
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=95.24 E-value=0.83 Score=51.04 Aligned_cols=206 Identities=8% Similarity=-0.099 Sum_probs=101.9
Q ss_pred ccEEEEECC--C-CcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCC------CcEE
Q 006473 101 GDLYRYDVE--K-QEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT------NQWE 169 (643)
Q Consensus 101 ndv~~yd~~--~-~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t------~~W~ 169 (643)
..||.+++. . ...+.++.............+++ +++.+++......... .......+|++|+.+ ....
T Consensus 102 ~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~ 180 (662)
T 3azo_A 102 QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEG-PSDVRRFLAAVPLDGSAAADRSAVR 180 (662)
T ss_dssp CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSS-TTCEEEEEEEEETTSTTTTCGGGSE
T ss_pred CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCC-CCCceeEEEEEECCCCccccCCcee
Confidence 478999987 4 66666654210001122222233 4444444433210000 011246899999988 6766
Q ss_pred Eec-cCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcC-CC---ceEEeccCCCCCCCCCccceeEE
Q 006473 170 QLN-LKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLD-QF---KWQEIKPRFGSMWPSPRSGFQFF 242 (643)
Q Consensus 170 ~~~-~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~-t~---~W~~v~~~~~~~~P~~R~~~s~~ 242 (643)
.+. . .+ . ......+ +++.+++......... --...||++|+. +. ....+... . .......+
T Consensus 181 ~l~~~--~~--~-~~~~~~~SpDG~~la~~~~~~~~~~-~~~~~i~~~d~~~~g~~~~~~~l~~~-----~-~~~~~~~~ 248 (662)
T 3azo_A 181 ELSDD--AH--R-FVTGPRLSPDGRQAVWLAWDHPRMP-WEGTELKTARVTEDGRFADTRTLLGG-----P-EEAIAQAE 248 (662)
T ss_dssp ESSCS--CS--S-EECCCEECTTSSEEEEEEECTTCCT-TTCEEEEEEEECTTSCEEEEEEEEEE-----T-TBCEEEEE
T ss_pred EEEec--CC--C-cccCceECCCCCEEEEEECCCCCCC-CCCcEEEEEEECCCCcccccEEeCCC-----C-CceEcceE
Confidence 654 2 11 1 1111223 5554555544321110 012579999998 56 34433321 0 11112222
Q ss_pred Ee-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCC---CCCCce-eeEEEEE-CCeEEEecccc
Q 006473 243 VY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGM---PPGPRA-GFSMCVH-KKRALLFGGVV 316 (643)
Q Consensus 243 ~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~---~P~~R~-g~s~~~~-~~~iyvfGG~~ 316 (643)
.. +++||+.+...+. ..+|++|+.+..|..+..... .|.-.. ..++++. ++++|+.+..
T Consensus 249 ~spdg~l~~~~~~~~~--------------~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~- 313 (662)
T 3azo_A 249 WAPDGSLIVATDRTGW--------------WNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK- 313 (662)
T ss_dssp ECTTSCEEEEECTTSS--------------CEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-
T ss_pred ECCCCeEEEEECCCCC--------------eEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-
Confidence 22 5667776654322 359999998888888754211 111110 1234444 5677666543
Q ss_pred ccccCccccccccCCcEEEEECCCCcEEEe
Q 006473 317 DMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346 (643)
Q Consensus 317 ~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l 346 (643)
. ...||.+|+.+.....|
T Consensus 314 ~------------~~~l~~~d~~~~~~~~l 331 (662)
T 3azo_A 314 G------------AAVLGILDPESGELVDA 331 (662)
T ss_dssp S------------SCEEEEEETTTTEEEEC
T ss_pred C------------ccEEEEEECCCCcEEEe
Confidence 2 35688889887665444
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=95.20 E-value=0.76 Score=51.35 Aligned_cols=225 Identities=12% Similarity=-0.022 Sum_probs=116.7
Q ss_pred EEEEeccCCCEEEEEcceecCC-CCceeeccEEEEECCC------CcEEEec-CCCCCCCceeeEEEEE-CCEEEEEeCc
Q 006473 73 SLNINPLKETELILYGGEFYNG-NKTYVYGDLYRYDVEK------QEWKVIS-SPNSPPPRSAHQAVSW-KNYLYIFGGE 143 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g-~~~~~~ndv~~yd~~~------~~W~~l~-s~~~P~pRs~ha~~~~-~~~iyvfGG~ 143 (643)
.++..| +++.++++...... ........||++|+.+ .+.+.+. ... ......+.- +++.+++...
T Consensus 134 ~~~~sp--Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~SpDG~~la~~~~ 207 (662)
T 3azo_A 134 DPVLLP--ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAH----RFVTGPRLSPDGRQAVWLAW 207 (662)
T ss_dssp EEEEET--TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCS----SEECCCEECTTSSEEEEEEE
T ss_pred CcEECC--CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCC----CcccCceECCCCCEEEEEEC
Confidence 444555 55555555532110 0112346899999998 7777765 321 111111221 4443444332
Q ss_pred cCCCCCCcceecCeEEEEECC-CC---cEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcC
Q 006473 144 FTSPNQERFHHYKDFWMLDLK-TN---QWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (643)
Q Consensus 144 ~~~~~~~~~~~~~dv~~yD~~-t~---~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~ 217 (643)
...... .....+|++|+. ++ ....+... . . .......+ +++||+.+...+ ...||++|+.
T Consensus 208 ~~~~~~---~~~~~i~~~d~~~~g~~~~~~~l~~~--~-~-~~~~~~~~spdg~l~~~~~~~~-------~~~l~~~~~~ 273 (662)
T 3azo_A 208 DHPRMP---WEGTELKTARVTEDGRFADTRTLLGG--P-E-EAIAQAEWAPDGSLIVATDRTG-------WWNLHRVDPA 273 (662)
T ss_dssp CTTCCT---TTCEEEEEEEECTTSCEEEEEEEEEE--T-T-BCEEEEEECTTSCEEEEECTTS-------SCEEEEECTT
T ss_pred CCCCCC---CCCcEEEEEEECCCCcccccEEeCCC--C-C-ceEcceEECCCCeEEEEECCCC-------CeEEEEEECC
Confidence 221110 012579999998 56 44444321 1 1 11222333 566766554321 2479999998
Q ss_pred CCceEEeccCCCCC-CCCCcc-ceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCC
Q 006473 218 QFKWQEIKPRFGSM-WPSPRS-GFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPP 294 (643)
Q Consensus 218 t~~W~~v~~~~~~~-~P~~R~-~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 294 (643)
+..+..+....... .|.-.. ..+++.. ++.+++.+.. +. ..+|.+|+.+.....+...
T Consensus 274 ~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~--------------~~l~~~d~~~~~~~~l~~~---- 334 (662)
T 3azo_A 274 TGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA--------------AVLGILDPESGELVDAAGP---- 334 (662)
T ss_dssp TCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS--------------CEEEEEETTTTEEEECCSS----
T ss_pred CCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc--------------cEEEEEECCCCcEEEecCC----
Confidence 88888776542111 011111 1123333 6667666654 32 4588999888877666431
Q ss_pred CCceeeEE-EEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 295 GPRAGFSM-CVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 295 ~~R~g~s~-~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
. ....++ ...++.+++..+... ....||.+|+.+.+...+..
T Consensus 335 ~-~~~~~~~s~~~~~~~~~~~~~~-----------~~~~i~~~d~~~g~~~~l~~ 377 (662)
T 3azo_A 335 W-TEWAATLTVSGTRAVGVAASPR-----------TAYEVVELDTVTGRARTIGA 377 (662)
T ss_dssp C-CEEEEEEEEETTEEEEEEEETT-----------EEEEEEEEETTTCCEEEEES
T ss_pred C-CeEEEEEecCCCEEEEEEcCCC-----------CCCEEEEEECCCCceEEeec
Confidence 1 112233 445666666554321 13569999999998887754
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=95.20 E-value=2.8 Score=42.41 Aligned_cols=136 Identities=13% Similarity=0.027 Sum_probs=70.3
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (643)
..+.+||+.+......-. .... .-.+++.. ++.+++.|+.+ ..+.+||+.+..-...-.. .
T Consensus 164 ~~i~~wd~~~~~~~~~~~--~h~~-~v~~~~~~~~~~~l~sg~~d---------~~v~~wd~~~~~~~~~~~~------h 225 (340)
T 1got_B 164 TTCALWDIETGQQTTTFT--GHTG-DVMSLSLAPDTRLFVSGACD---------ASAKLWDVREGMCRQTFTG------H 225 (340)
T ss_dssp SCEEEEETTTTEEEEEEC--CCSS-CEEEEEECTTSSEEEEEETT---------SCEEEEETTTCSEEEEECC------C
T ss_pred CcEEEEECCCCcEEEEEc--CCCC-ceEEEEECCCCCEEEEEeCC---------CcEEEEECCCCeeEEEEcC------C
Confidence 357788988876443211 1111 11122222 55677777753 4578888876643222111 1
Q ss_pred CccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceee-EEEEE-CCeEEE
Q 006473 235 PRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF-SMCVH-KKRALL 311 (643)
Q Consensus 235 ~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~-s~~~~-~~~iyv 311 (643)
...-.+++.. ++.+++.|+.++. +.+||+.+..-...-.. +....+. ++++. ++++++
T Consensus 226 ~~~v~~v~~~p~~~~l~s~s~d~~----------------v~iwd~~~~~~~~~~~~---~~~~~~v~~~~~s~~g~~l~ 286 (340)
T 1got_B 226 ESDINAICFFPNGNAFATGSDDAT----------------CRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRLLL 286 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSC----------------EEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSSEEE
T ss_pred cCCEEEEEEcCCCCEEEEEcCCCc----------------EEEEECCCCcEEEEEcc---CCcccceEEEEECCCCCEEE
Confidence 1111222333 6677888887765 77888876543222111 1111222 33333 577777
Q ss_pred eccccccccCccccccccCCcEEEEECCCCc
Q 006473 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
.|+.. ..|.+||+.+..
T Consensus 287 ~g~~d--------------~~i~vwd~~~~~ 303 (340)
T 1got_B 287 AGYDD--------------FNCNVWDALKAD 303 (340)
T ss_dssp EEETT--------------SEEEEEETTTCC
T ss_pred EECCC--------------CeEEEEEcccCc
Confidence 77653 358899987643
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.65 Score=47.44 Aligned_cols=189 Identities=11% Similarity=0.126 Sum_probs=95.4
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCC
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~ 149 (643)
.++...| ++.+++.||. + ..+.+||..++.|............ ....+.+ ++.+++.|+..
T Consensus 20 ~~l~~sp--~g~~las~~~--D-------~~i~iw~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~s~D----- 82 (345)
T 3fm0_A 20 WFLAWNP--AGTLLASCGG--D-------RRIRIWGTEGDSWICKSVLSEGHQR-TVRKVAWSPCGNYLASASFD----- 82 (345)
T ss_dssp EEEEECT--TSSCEEEEET--T-------SCEEEEEEETTEEEEEEEECSSCSS-CEEEEEECTTSSEEEEEETT-----
T ss_pred EEEEECC--CCCEEEEEcC--C-------CeEEEEEcCCCcceeeeeeccccCC-cEEEEEECCCCCEEEEEECC-----
Confidence 4566666 6788888883 2 3577888888887643211000111 1223333 46667777653
Q ss_pred CcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCc-eEEecc
Q 006473 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK-WQEIKP 226 (643)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~-W~~v~~ 226 (643)
..+.++|..+..+..+.. +..-...-.++.+ ++.+++.|+.+ ..+.+||+.+.. +..+..
T Consensus 83 ------~~v~iw~~~~~~~~~~~~--~~~h~~~v~~v~~sp~~~~l~s~s~D---------~~v~iwd~~~~~~~~~~~~ 145 (345)
T 3fm0_A 83 ------ATTCIWKKNQDDFECVTT--LEGHENEVKSVAWAPSGNLLATCSRD---------KSVWVWEVDEEDEYECVSV 145 (345)
T ss_dssp ------SCEEEEEECCC-EEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT---------SCEEEEEECTTSCEEEEEE
T ss_pred ------CcEEEEEccCCCeEEEEE--ccCCCCCceEEEEeCCCCEEEEEECC---------CeEEEEECCCCCCeEEEEE
Confidence 235566766666654433 1111111122333 55666777653 357778876542 333332
Q ss_pred CCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE
Q 006473 227 RFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (643)
Q Consensus 227 ~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~ 305 (643)
... ....-.+++.. ++.+++.|+.++. +.+|+..+..|..+..... ....-.++++.
T Consensus 146 ~~~----h~~~v~~~~~~p~~~~l~s~s~d~~----------------i~~w~~~~~~~~~~~~~~~--h~~~v~~l~~s 203 (345)
T 3fm0_A 146 LNS----HTQDVKHVVWHPSQELLASASYDDT----------------VKLYREEEDDWVCCATLEG--HESTVWSLAFD 203 (345)
T ss_dssp ECC----CCSCEEEEEECSSSSCEEEEETTSC----------------EEEEEEETTEEEEEEEECC--CSSCEEEEEEC
T ss_pred ecC----cCCCeEEEEECCCCCEEEEEeCCCc----------------EEEEEecCCCEEEEEEecC--CCCceEEEEEC
Confidence 211 11111122222 5667778877655 6677877777765543211 11112233443
Q ss_pred -CCeEEEecccc
Q 006473 306 -KKRALLFGGVV 316 (643)
Q Consensus 306 -~~~iyvfGG~~ 316 (643)
+++.++.|+..
T Consensus 204 p~g~~l~s~s~D 215 (345)
T 3fm0_A 204 PSGQRLASCSDD 215 (345)
T ss_dssp TTSSEEEEEETT
T ss_pred CCCCEEEEEeCC
Confidence 56777777653
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=2.7 Score=46.21 Aligned_cols=102 Identities=14% Similarity=0.136 Sum_probs=56.4
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEE-ecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCe
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKV-ISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKD 157 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~-l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~d 157 (643)
++.+|+.+.. .+.|.++|+.+++... +..+. .-|.++.. +..||+.+.. +.
T Consensus 148 ~~~~~vs~~~---------d~~V~v~D~~t~~~~~~i~~g~-----~~~~v~~spdg~~l~v~~~d------------~~ 201 (543)
T 1nir_A 148 PNLFSVTLRD---------AGQIALVDGDSKKIVKVIDTGY-----AVHISRMSASGRYLLVIGRD------------AR 201 (543)
T ss_dssp GGEEEEEEGG---------GTEEEEEETTTCCEEEEEECST-----TEEEEEECTTSCEEEEEETT------------SE
T ss_pred CCEEEEEEcC---------CCeEEEEECCCceEEEEEecCc-----ccceEEECCCCCEEEEECCC------------Ce
Confidence 5788887762 3578889999886543 32221 14544443 4567776531 46
Q ss_pred EEEEEC--CCCcEEEeccCCCCCCCceeEEEEE-----CC-EEEEEeeeecCCCceeeeccEEEEEcCCCce
Q 006473 158 FWMLDL--KTNQWEQLNLKGCPSPRSGHRMVLY-----KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (643)
Q Consensus 158 v~~yD~--~t~~W~~~~~~g~P~~Rs~h~~~~~-----~~-~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W 221 (643)
+.+||+ .+.+-... .+....-+.+++- ++ +||+ +++. .+.+.+||..+.+-
T Consensus 202 V~v~D~~~~t~~~~~~----i~~g~~p~~va~sp~~~~dg~~l~v-~~~~--------~~~v~v~D~~t~~~ 260 (543)
T 1nir_A 202 IDMIDLWAKEPTKVAE----IKIGIEARSVESSKFKGYEDRYTIA-GAYW--------PPQFAIMDGETLEP 260 (543)
T ss_dssp EEEEETTSSSCEEEEE----EECCSEEEEEEECCSTTCTTTEEEE-EEEE--------SSEEEEEETTTCCE
T ss_pred EEEEECcCCCCcEEEE----EecCCCcceEEeCCCcCCCCCEEEE-EEcc--------CCeEEEEecccccc
Confidence 889999 66553221 1222222233332 34 4554 4432 35678889877653
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=95.16 E-value=1 Score=46.73 Aligned_cols=202 Identities=12% Similarity=0.092 Sum_probs=98.8
Q ss_pred EEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEE
Q 006473 83 ELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWML 161 (643)
Q Consensus 83 ~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~y 161 (643)
.+++.|+. -+.+.+||+.+.+....-... .....-.+++.. ++.+++.|+.. ..+.+|
T Consensus 145 ~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~iw 203 (402)
T 2aq5_A 145 NVLLSAGC---------DNVILVWDVGTGAAVLTLGPD-VHPDTIYSVDWSRDGALICTSCRD-----------KRVRVI 203 (402)
T ss_dssp TEEEEEET---------TSCEEEEETTTTEEEEEECTT-TCCSCEEEEEECTTSSCEEEEETT-----------SEEEEE
T ss_pred CEEEEEcC---------CCEEEEEECCCCCccEEEecC-CCCCceEEEEECCCCCEEEEEecC-----------CcEEEE
Confidence 46767762 246889999988765432101 011112222222 56666666642 468899
Q ss_pred ECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCce-EEeccCCCCCCCCCccce
Q 006473 162 DLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW-QEIKPRFGSMWPSPRSGF 239 (643)
Q Consensus 162 D~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W-~~v~~~~~~~~P~~R~~~ 239 (643)
|+.+..-...-..+....+. ..++.. ++.+++.|. ... .-..+.+||+.+..- ...... .....-.
T Consensus 204 d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~g~-~~~-----~d~~i~iwd~~~~~~~~~~~~~-----~~~~~v~ 271 (402)
T 2aq5_A 204 EPRKGTVVAEKDRPHEGTRP-VHAVFVSEGKILTTGF-SRM-----SERQVALWDTKHLEEPLSLQEL-----DTSSGVL 271 (402)
T ss_dssp ETTTTEEEEEEECSSCSSSC-CEEEECSTTEEEEEEE-CTT-----CCEEEEEEETTBCSSCSEEEEC-----CCCSSCE
T ss_pred eCCCCceeeeeccCCCCCcc-eEEEEcCCCcEEEEec-cCC-----CCceEEEEcCccccCCceEEec-----cCCCcee
Confidence 99887654332111111111 223332 667666652 111 135688899876432 111111 1111112
Q ss_pred eEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCe--eEEeccCCCCCCCceeeEEEEECCeEEEeccc
Q 006473 240 QFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE--WSKVKKIGMPPGPRAGFSMCVHKKRALLFGGV 315 (643)
Q Consensus 240 s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~--W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~ 315 (643)
+++.. +..|++.|+.++. +.+|++.+.. ...+.... ....-.++++..+..+++.+.
T Consensus 272 ~~~~s~~~~~l~~~g~~dg~----------------i~i~d~~~~~~~~~~l~~~~---~~~~v~~~~~sp~~~~~~s~~ 332 (402)
T 2aq5_A 272 LPFFDPDTNIVYLCGKGDSS----------------IRYFEITSEAPFLHYLSMFS---SKESQRGMGYMPKRGLEVNKC 332 (402)
T ss_dssp EEEEETTTTEEEEEETTCSC----------------EEEEEECSSTTCEEEEEEEC---CSSCCSEEEECCGGGSCGGGT
T ss_pred EEEEcCCCCEEEEEEcCCCe----------------EEEEEecCCCcceEeecccc---cCCcccceEEecccccceecc
Confidence 22333 5567777766554 6777776654 33333211 111122344444333333321
Q ss_pred cccccCccccccccCCcEEEEECCCCcEEEeEecCC
Q 006473 316 VDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKE 351 (643)
Q Consensus 316 ~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~ 351 (643)
..+.+|++.++...++....+
T Consensus 333 ---------------~~~~~~~l~~~~~~~i~~~~p 353 (402)
T 2aq5_A 333 ---------------EIARFYKLHERKCEPIAMTVP 353 (402)
T ss_dssp ---------------EEEEEEEEETTEEEEEEEECC
T ss_pred ---------------eeEEEEEcCCCcEEEEEEEcc
Confidence 247788888888777766443
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=95.15 E-value=1.8 Score=44.99 Aligned_cols=181 Identities=8% Similarity=-0.021 Sum_probs=95.1
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (643)
+.+++||+.++....+.... ....-.+++.. ++.++++|+.. ..+.+||+.+.+....-. ..
T Consensus 113 ~~v~lw~~~~~~~~~~~~~~--~~~~v~~v~~s~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~----~~ 175 (401)
T 4aez_A 113 RNVYVWNADSGSVSALAETD--ESTYVASVKWSHDGSFLSVGLGN-----------GLVDIYDVESQTKLRTMA----GH 175 (401)
T ss_dssp TEEEEEETTTCCEEEEEECC--TTCCEEEEEECTTSSEEEEEETT-----------SCEEEEETTTCCEEEEEC----CC
T ss_pred CeEEEeeCCCCcEeEeeecC--CCCCEEEEEECCCCCEEEEECCC-----------CeEEEEECcCCeEEEEec----CC
Confidence 47899999998876554321 11112222222 55666666642 357888988776443321 11
Q ss_pred CceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCC
Q 006473 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEV 258 (643)
Q Consensus 180 Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~ 258 (643)
.....++.+++.+++.|+.+ ..+.+||+....-...... .....-.++... ++.+++.|+.++.
T Consensus 176 ~~~v~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~d~~- 240 (401)
T 4aez_A 176 QARVGCLSWNRHVLSSGSRS---------GAIHHHDVRIANHQIGTLQ-----GHSSEVCGLAWRSDGLQLASGGNDNV- 240 (401)
T ss_dssp SSCEEEEEEETTEEEEEETT---------SEEEEEETTSSSCEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSC-
T ss_pred CCceEEEEECCCEEEEEcCC---------CCEEEEecccCcceeeEEc-----CCCCCeeEEEEcCCCCEEEEEeCCCe-
Confidence 12223344466677777642 4688888874332111111 111111222233 6677888887655
Q ss_pred CCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE--CCeEEEeccccccccCccccccccCCcEEEE
Q 006473 259 STDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGF 336 (643)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~y 336 (643)
+.+||+.+..-...-. .....-.++++. +..+++.||-.. -..|.+|
T Consensus 241 ---------------v~iwd~~~~~~~~~~~----~~~~~v~~~~~~p~~~~ll~~~~gs~------------d~~i~i~ 289 (401)
T 4aez_A 241 ---------------VQIWDARSSIPKFTKT----NHNAAVKAVAWCPWQSNLLATGGGTM------------DKQIHFW 289 (401)
T ss_dssp ---------------EEEEETTCSSEEEEEC----CCSSCCCEEEECTTSTTEEEEECCTT------------TCEEEEE
T ss_pred ---------------EEEccCCCCCccEEec----CCcceEEEEEECCCCCCEEEEecCCC------------CCEEEEE
Confidence 7888887654332211 111122234444 456777775211 2459999
Q ss_pred ECCCCcEE
Q 006473 337 QLDNHRWY 344 (643)
Q Consensus 337 d~~t~~W~ 344 (643)
|+.+.+-.
T Consensus 290 d~~~~~~~ 297 (401)
T 4aez_A 290 NAATGARV 297 (401)
T ss_dssp ETTTCCEE
T ss_pred ECCCCCEE
Confidence 99876543
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.97 Score=44.73 Aligned_cols=210 Identities=7% Similarity=-0.088 Sum_probs=106.7
Q ss_pred CceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCC
Q 006473 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPN 148 (643)
Q Consensus 70 ~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~ 148 (643)
...+.+..|. ++.||+.+.. .+.|++|++.+. .+.+... . ..-++++.. ++.||+....
T Consensus 29 ~~eg~~~d~~-g~~l~~~~~~---------~~~i~~~~~~~~-~~~~~~~---~-~~~~~l~~~~dg~l~v~~~~----- 88 (296)
T 3e5z_A 29 WTEGPVYVPA-RSAVIFSDVR---------QNRTWAWSDDGQ-LSPEMHP---S-HHQNGHCLNKQGHLIACSHG----- 88 (296)
T ss_dssp SEEEEEEEGG-GTEEEEEEGG---------GTEEEEEETTSC-EEEEESS---C-SSEEEEEECTTCCEEEEETT-----
T ss_pred cccCCeEeCC-CCEEEEEeCC---------CCEEEEEECCCC-eEEEECC---C-CCcceeeECCCCcEEEEecC-----
Confidence 4556666662 2448887762 247899999988 6666432 1 122333333 5678876532
Q ss_pred CCcceecCeEEEEECCCCcEEEeccCC--CCCCCceeEEEEECCEEEEE----eeeecC----CCceeeeccEEEEEcCC
Q 006473 149 QERFHHYKDFWMLDLKTNQWEQLNLKG--CPSPRSGHRMVLYKHKIIVF----GGFYDT----LREVRYYNDLYVFDLDQ 218 (643)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~g--~P~~Rs~h~~~~~~~~lyvf----GG~~~~----~~~~~~~~dv~~yD~~t 218 (643)
...+++||+.+++...+.... .+..+....++--++.||+. |..... .........||+|++.
T Consensus 89 ------~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (296)
T 3e5z_A 89 ------LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD- 161 (296)
T ss_dssp ------TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred ------CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-
Confidence 246899999888877663310 11111112222226788886 432100 0000012479999987
Q ss_pred CceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCC-CCee-EEecc-CCCCC
Q 006473 219 FKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR-TWEW-SKVKK-IGMPP 294 (643)
Q Consensus 219 ~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~-t~~W-~~l~~-~g~~P 294 (643)
.+...+... ...+ .+++.. ++.+++.+.... .+++|++. +.+. ..... .....
T Consensus 162 g~~~~~~~~----~~~~---~gi~~s~dg~~lv~~~~~~----------------~i~~~~~~~~g~~~~~~~~~~~~~~ 218 (296)
T 3e5z_A 162 GTLSAPIRD----RVKP---NGLAFLPSGNLLVSDTGDN----------------ATHRYCLNARGETEYQGVHFTVEPG 218 (296)
T ss_dssp SCEEEEECC----CSSE---EEEEECTTSCEEEEETTTT----------------EEEEEEECSSSCEEEEEEEECCSSS
T ss_pred CCEEEeecC----CCCC---ccEEECCCCCEEEEeCCCC----------------eEEEEEECCCCcCcCCCeEeeCCCC
Confidence 555444322 0111 223333 455555443322 47888875 4444 21111 11001
Q ss_pred CCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 295 GPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 295 ~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
.++ ++++. +++||+..+ +.|++||+.......+..
T Consensus 219 ~p~---~i~~d~~G~l~v~~~----------------~~v~~~~~~g~~~~~~~~ 254 (296)
T 3e5z_A 219 KTD---GLRVDAGGLIWASAG----------------DGVHVLTPDGDELGRVLT 254 (296)
T ss_dssp CCC---SEEEBTTSCEEEEET----------------TEEEEECTTSCEEEEEEC
T ss_pred CCC---eEEECCCCCEEEEcC----------------CeEEEECCCCCEEEEEEC
Confidence 111 34443 577877661 348999998665555554
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.49 Score=48.80 Aligned_cols=190 Identities=8% Similarity=0.012 Sum_probs=95.5
Q ss_pred EEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCc
Q 006473 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 74 ~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~ 151 (643)
+.+.| ++.+++.|+. + ..+.+||+.+.+-...-... . ..-.+++.. +..+++.||..
T Consensus 145 v~~sp--dg~~l~sgs~--d-------g~v~iwd~~~~~~~~~~~~h--~-~~v~~v~~s~~~~~~~~s~~~d------- 203 (357)
T 4g56_B 145 LSVFS--DGTQAVSGGK--D-------FSVKVWDLSQKAVLKSYNAH--S-SEVNCVAACPGKDTIFLSCGED------- 203 (357)
T ss_dssp EEECS--SSSEEEEEET--T-------SCEEEEETTTTEEEEEECCC--S-SCEEEEEECTTCSSCEEEEETT-------
T ss_pred EEECC--CCCEEEEEeC--C-------CeEEEEECCCCcEEEEEcCC--C-CCEEEEEEccCCCceeeeeccC-------
Confidence 34444 5667777772 2 35788898887654332211 1 111122222 34577777653
Q ss_pred ceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE---CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCC
Q 006473 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~---~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (643)
..+.+||+.+.+-..... .........++.+ ++.+++.|+.+ ..+.+||+.+.+-...-..
T Consensus 204 ----g~v~~wd~~~~~~~~~~~--~~~~~~~v~~v~~sp~~~~~la~g~~d---------~~i~~wd~~~~~~~~~~~~- 267 (357)
T 4g56_B 204 ----GRILLWDTRKPKPATRID--FCASDTIPTSVTWHPEKDDTFACGDET---------GNVSLVNIKNPDSAQTSAV- 267 (357)
T ss_dssp ----SCEEECCTTSSSCBCBCC--CTTCCSCEEEEEECTTSTTEEEEEESS---------SCEEEEESSCGGGCEEECC-
T ss_pred ----CceEEEECCCCceeeeee--eccccccccchhhhhcccceEEEeecc---------cceeEEECCCCcEeEEEec-
Confidence 346778887665322211 1111111223333 35677777642 3578888876542211111
Q ss_pred CCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-
Q 006473 229 GSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH- 305 (643)
Q Consensus 229 ~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~- 305 (643)
...+. .+++.. +..+++.|+.++. +.+||+.+.+-.... +. ...-.++++.
T Consensus 268 ---~~~~v--~~l~~sp~~~~~lasgs~D~~----------------i~iwd~~~~~~~~~~--~H---~~~V~~vafsP 321 (357)
T 4g56_B 268 ---HSQNI--TGLAYSYHSSPFLASISEDCT----------------VAVLDADFSEVFRDL--SH---RDFVTGVAWSP 321 (357)
T ss_dssp ---CSSCE--EEEEECSSSSCCEEEEETTSC----------------EEEECTTSCEEEEEC--CC---SSCEEEEEECS
T ss_pred ---cceeE--EEEEEcCCCCCEEEEEeCCCE----------------EEEEECCCCcEeEEC--CC---CCCEEEEEEeC
Confidence 01111 122222 4466777776655 778888776544332 11 1112234443
Q ss_pred -CCeEEEeccccccccCccccccccCCcEEEEECCC
Q 006473 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (643)
Q Consensus 306 -~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (643)
++.+++.||.+ ..|.+|++.+
T Consensus 322 ~d~~~l~s~s~D--------------g~v~iW~~~~ 343 (357)
T 4g56_B 322 LDHSKFTTVGWD--------------HKVLHHHLPS 343 (357)
T ss_dssp SSTTEEEEEETT--------------SCEEEEECC-
T ss_pred CCCCEEEEEcCC--------------CeEEEEECCC
Confidence 57788888764 3488888754
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.07 E-value=1.6 Score=46.15 Aligned_cols=65 Identities=11% Similarity=-0.011 Sum_probs=35.9
Q ss_pred CEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEE
Q 006473 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214 (643)
Q Consensus 135 ~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~y 214 (643)
+.+++.|+.. ..+.+||+.+.........+ ......+.+.. ++.+++.||. -..|.+|
T Consensus 210 ~~~l~s~~~d-----------~~i~vwd~~~~~~~~~~~~~-h~~~v~~~~~s-d~~~l~s~~~---------d~~v~vw 267 (450)
T 2vdu_B 210 HQFIITSDRD-----------EHIKISHYPQCFIVDKWLFG-HKHFVSSICCG-KDYLLLSAGG---------DDKIFAW 267 (450)
T ss_dssp CEEEEEEETT-----------SCEEEEEESCTTCEEEECCC-CSSCEEEEEEC-STTEEEEEES---------SSEEEEE
T ss_pred CcEEEEEcCC-----------CcEEEEECCCCceeeeeecC-CCCceEEEEEC-CCCEEEEEeC---------CCeEEEE
Confidence 6777877753 35778888766543321111 11111111222 6666667764 2468888
Q ss_pred EcCCCce
Q 006473 215 DLDQFKW 221 (643)
Q Consensus 215 D~~t~~W 221 (643)
|+.+.+.
T Consensus 268 d~~~~~~ 274 (450)
T 2vdu_B 268 DWKTGKN 274 (450)
T ss_dssp ETTTCCE
T ss_pred ECCCCcE
Confidence 9887764
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=95.03 E-value=2.3 Score=44.63 Aligned_cols=137 Identities=10% Similarity=0.045 Sum_probs=70.6
Q ss_pred eEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCc
Q 006473 157 DFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR 236 (643)
Q Consensus 157 dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R 236 (643)
.+.+||+.+..-...-. .....-.++.+++..++.|+.+ ..+.+||+.+.+-...-.. ..
T Consensus 260 ~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~-------~~ 319 (445)
T 2ovr_B 260 MVKVWDPETETCLHTLQ----GHTNRVYSLQFDGIHVVSGSLD---------TSIRVWDVETGNCIHTLTG-------HQ 319 (445)
T ss_dssp CEEEEEGGGTEEEEEEC----CCSSCEEEEEECSSEEEEEETT---------SCEEEEETTTCCEEEEECC-------CC
T ss_pred EEEEEECCCCcEeEEec----CCCCceEEEEECCCEEEEEeCC---------CeEEEEECCCCCEEEEEcC-------Cc
Confidence 46677776654322111 1111222333466666677642 4588899877653222111 11
Q ss_pred cceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEecccc
Q 006473 237 SGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVV 316 (643)
Q Consensus 237 ~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~ 316 (643)
.....+...+.+++.|+.++. +.+||+.+..-...-.. +........++..++.+++.|+..
T Consensus 320 ~~v~~~~~~~~~l~~~~~dg~----------------i~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~~~d 381 (445)
T 2ovr_B 320 SLTSGMELKDNILVSGNADST----------------VKIWDIKTGQCLQTLQG--PNKHQSAVTCLQFNKNFVITSSDD 381 (445)
T ss_dssp SCEEEEEEETTEEEEEETTSC----------------EEEEETTTCCEEEEECS--TTSCSSCEEEEEECSSEEEEEETT
T ss_pred ccEEEEEEeCCEEEEEeCCCe----------------EEEEECCCCcEEEEEcc--CCCCCCCEEEEEECCCEEEEEeCC
Confidence 111222234556777776655 77888866543322111 011122233344467777777753
Q ss_pred ccccCccccccccCCcEEEEECCCCcEEE
Q 006473 317 DMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (643)
Q Consensus 317 ~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (643)
+.|.+||+.+.+...
T Consensus 382 --------------g~v~iwd~~~~~~~~ 396 (445)
T 2ovr_B 382 --------------GTVKLWDLKTGEFIR 396 (445)
T ss_dssp --------------SEEEEEETTTCCEEE
T ss_pred --------------CeEEEEECCCCceee
Confidence 359999999876543
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.78 Score=47.19 Aligned_cols=132 Identities=5% Similarity=-0.053 Sum_probs=66.1
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (643)
..+.+||+.+..-...-. .....-.+++.. ++.+++.|+.+ ..+.+||+.+......-.. .
T Consensus 227 g~i~~~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~------~ 288 (425)
T 1r5m_A 227 GAIFVYQITEKTPTGKLI---GHHGPISVLEFNDTNKLLLSASDD---------GTLRIWHGGNGNSQNCFYG------H 288 (425)
T ss_dssp GCEEEEETTCSSCSEEEC---CCSSCEEEEEEETTTTEEEEEETT---------SCEEEECSSSBSCSEEECC------C
T ss_pred CeEEEEEcCCCceeeeec---cCCCceEEEEECCCCCEEEEEcCC---------CEEEEEECCCCccceEecC------C
Confidence 458889988754221111 111111223333 45566666632 3578888876543222111 1
Q ss_pred CccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEe
Q 006473 235 PRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLF 312 (643)
Q Consensus 235 ~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvf 312 (643)
...-.+++.. ++ +++.|+.++. +.+||+.+.+-...... ....-.++++. ++.+++.
T Consensus 289 ~~~i~~~~~~~~~-~l~~~~~d~~----------------i~i~d~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~ 347 (425)
T 1r5m_A 289 SQSIVSASWVGDD-KVISCSMDGS----------------VRLWSLKQNTLLALSIV----DGVPIFAGRISQDGQKYAV 347 (425)
T ss_dssp SSCEEEEEEETTT-EEEEEETTSE----------------EEEEETTTTEEEEEEEC----TTCCEEEEEECTTSSEEEE
T ss_pred CccEEEEEECCCC-EEEEEeCCCc----------------EEEEECCCCcEeEeccc----CCccEEEEEEcCCCCEEEE
Confidence 1122233334 44 7777776544 78889877654333221 11122233333 5677777
Q ss_pred ccccccccCccccccccCCcEEEEECCC
Q 006473 313 GGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (643)
Q Consensus 313 GG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (643)
|+.. +.|.+||+.+
T Consensus 348 ~~~d--------------g~i~i~~~~~ 361 (425)
T 1r5m_A 348 AFMD--------------GQVNVYDLKK 361 (425)
T ss_dssp EETT--------------SCEEEEECHH
T ss_pred EECC--------------CeEEEEECCC
Confidence 7643 3588888764
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.87 Score=46.84 Aligned_cols=184 Identities=10% Similarity=0.020 Sum_probs=90.1
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE---CCEEEEEeCccCCCCCCcceecCe
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQERFHHYKD 157 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~---~~~iyvfGG~~~~~~~~~~~~~~d 157 (643)
++.+++.|+. -+.+.+||+.+++-...-... .....++.+ +..+++.|+.. ..
T Consensus 138 dg~~l~sgs~---------d~~i~iwd~~~~~~~~~~~~h----~~~V~~~~~~~~~~~~l~s~s~D-----------~~ 193 (344)
T 4gqb_B 138 SGTQAVSGSK---------DICIKVWDLAQQVVLSSYRAH----AAQVTCVAASPHKDSVFLSCSED-----------NR 193 (344)
T ss_dssp TSSEEEEEET---------TSCEEEEETTTTEEEEEECCC----SSCEEEEEECSSCTTEEEEEETT-----------SC
T ss_pred CCCEEEEEeC---------CCeEEEEECCCCcEEEEEcCc----CCceEEEEecCCCCCceeeeccc-----------cc
Confidence 5566666662 135788888877543321111 111122222 34577777653 34
Q ss_pred EEEEECCCCcEEEeccCCCCCCCceeEEEEE---CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCC
Q 006473 158 FWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (643)
Q Consensus 158 v~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~---~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (643)
+.+||+.+.+-...-. .........++.+ ++.+++.|+.+ ..|.+||+.+.+- +.... ..
T Consensus 194 v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~l~sg~~d---------g~v~~wd~~~~~~--~~~~~----~h 256 (344)
T 4gqb_B 194 ILLWDTRCPKPASQIG--CSAPGYLPTSLAWHPQQSEVFVFGDEN---------GTVSLVDTKSTSC--VLSSA----VH 256 (344)
T ss_dssp EEEEETTSSSCEEECC------CCCEEEEEECSSCTTEEEEEETT---------SEEEEEESCC--C--CEEEE----CC
T ss_pred cccccccccceeeeee--cceeeccceeeeecCCCCcceEEeccC---------CcEEEEECCCCcE--EEEEc----CC
Confidence 7788988776433211 1111111122333 45677777642 3577888876532 11110 01
Q ss_pred CccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE--CCeEE
Q 006473 235 PRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRAL 310 (643)
Q Consensus 235 ~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~--~~~iy 310 (643)
...-.+++.. +..+++.|+.++. +.+||..+.+-..+. +. ...-.++++. +..++
T Consensus 257 ~~~v~~v~fsp~g~~~lasgs~D~~----------------i~vwd~~~~~~~~~~--~H---~~~V~~v~~sp~~~~ll 315 (344)
T 4gqb_B 257 SQCVTGLVFSPHSVPFLASLSEDCS----------------LAVLDSSLSELFRSQ--AH---RDFVRDATWSPLNHSLL 315 (344)
T ss_dssp SSCEEEEEECSSSSCCEEEEETTSC----------------EEEECTTCCEEEEEC--CC---SSCEEEEEECSSSTTEE
T ss_pred CCCEEEEEEccCCCeEEEEEeCCCe----------------EEEEECCCCcEEEEc--CC---CCCEEEEEEeCCCCeEE
Confidence 1111222222 3456777777655 778888776543332 11 1122334443 34577
Q ss_pred EeccccccccCccccccccCCcEEEEECCC
Q 006473 311 LFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (643)
Q Consensus 311 vfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (643)
+.||.+. .|.+|++.+
T Consensus 316 as~s~D~--------------~v~~w~v~~ 331 (344)
T 4gqb_B 316 TTVGWDH--------------QVVHHVVPT 331 (344)
T ss_dssp EEEETTS--------------CEEEEECCC
T ss_pred EEEcCCC--------------eEEEEECCC
Confidence 6777542 477777765
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=94.90 E-value=3.2 Score=42.80 Aligned_cols=104 Identities=12% Similarity=-0.053 Sum_probs=55.7
Q ss_pred CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCE-EEEEcCCCCCCCCccCCCC
Q 006473 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDE-VFLYGGYSKEVSTDKNQSE 266 (643)
Q Consensus 189 ~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~-iyv~GG~~~~~~~~~~~~~ 266 (643)
++.+++.|+.+ ..+.+||+.+..-...... .....-.+++.. ++. +++.|+.++.
T Consensus 258 ~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~g~~dg~--------- 314 (420)
T 3vl1_A 258 YGKYVIAGHVS---------GVITVHNVFSKEQTIQLPS-----KFTCSCNSLTVDGNNANYIYAGYENGM--------- 314 (420)
T ss_dssp TTEEEEEEETT---------SCEEEEETTTCCEEEEECC-----TTSSCEEEEEECSSCTTEEEEEETTSE---------
T ss_pred CCCEEEEEcCC---------CeEEEEECCCCceeEEccc-----ccCCCceeEEEeCCCCCEEEEEeCCCe---------
Confidence 45666666642 3588899877653222211 111112223333 344 7777776654
Q ss_pred CCceeeeEEEEeCCCCe--eEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCC
Q 006473 267 KGIIHSDLWSLDPRTWE--WSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (643)
Q Consensus 267 ~~~~~~dv~~yd~~t~~--W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (643)
+.+||+.+.. -..+... ....-.+++..++.+++.||.. ..|.+|++.+
T Consensus 315 -------i~vwd~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~l~s~~~d--------------~~v~iw~~~~ 365 (420)
T 3vl1_A 315 -------LAQWDLRSPECPVGEFLIN----EGTPINNVYFAAGALFVSSGFD--------------TSIKLDIISD 365 (420)
T ss_dssp -------EEEEETTCTTSCSEEEEES----TTSCEEEEEEETTEEEEEETTT--------------EEEEEEEECC
T ss_pred -------EEEEEcCCCcCchhhhhcc----CCCCceEEEeCCCCEEEEecCC--------------ccEEEEeccC
Confidence 7888887643 2233221 1112233445578888888754 3478888765
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.88 Score=45.45 Aligned_cols=109 Identities=4% Similarity=-0.104 Sum_probs=61.1
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDF 158 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv 158 (643)
.+.+|+.++. .+.|.+||+.+++........ .....++.. +..||+.+.. -..+
T Consensus 9 ~~~~~v~~~~---------~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~-----------~~~i 64 (331)
T 3u4y_A 9 SNFGIVVEQH---------LRRISFFSTDTLEILNQITLG----YDFVDTAITSDCSNVVVTSDF-----------CQTL 64 (331)
T ss_dssp CCEEEEEEGG---------GTEEEEEETTTCCEEEEEECC----CCEEEEEECSSSCEEEEEEST-----------TCEE
T ss_pred CCEEEEEecC---------CCeEEEEeCcccceeeeEEcc----CCcceEEEcCCCCEEEEEeCC-----------CCeE
Confidence 5778887762 358899999999886543321 111222222 4457777652 2478
Q ss_pred EEEECCCCcE-E-EeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEe
Q 006473 159 WMLDLKTNQW-E-QLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (643)
Q Consensus 159 ~~yD~~t~~W-~-~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (643)
++||+.+... . .+.. ...++ +++++. +++|| .+...+ . ...+++||+.+.+....
T Consensus 65 ~~~d~~~~~~~~~~~~~--~~~~~--~~~~~s~dg~~l~-~~~~~~-~-----~~~i~v~d~~~~~~~~~ 123 (331)
T 3u4y_A 65 VQIETQLEPPKVVAIQE--GQSSM--ADVDITPDDQFAV-TVTGLN-H-----PFNMQSYSFLKNKFIST 123 (331)
T ss_dssp EEEECSSSSCEEEEEEE--CSSCC--CCEEECTTSSEEE-ECCCSS-S-----SCEEEEEETTTTEEEEE
T ss_pred EEEECCCCceeEEeccc--CCCCc--cceEECCCCCEEE-EecCCC-C-----cccEEEEECCCCCeEEE
Confidence 9999988874 2 2222 12222 213333 44666 332110 0 12799999988765443
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=1.6 Score=48.97 Aligned_cols=121 Identities=10% Similarity=0.083 Sum_probs=65.6
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEEC-CCC--cEEEecCCCC---CCCce---eeEEEE--ECCE----EEEEeCccC
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDV-EKQ--EWKVISSPNS---PPPRS---AHQAVS--WKNY----LYIFGGEFT 145 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~-~~~--~W~~l~s~~~---P~pRs---~ha~~~--~~~~----iyvfGG~~~ 145 (643)
++.||+.+.. .+.|+++|. .++ .|+.-..... |.+++ ....++ .++. ||+...
T Consensus 62 ~g~vyv~~~~---------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~--- 129 (599)
T 1w6s_A 62 DGKMYIHTSF---------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL--- 129 (599)
T ss_dssp TTEEEEECST---------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT---
T ss_pred CCEEEEEeCC---------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC---
Confidence 7888887651 247999999 666 4886433210 00111 122334 4565 777532
Q ss_pred CCCCCcceecCeEEEEECCCCc--EEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc--e
Q 006473 146 SPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--W 221 (643)
Q Consensus 146 ~~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W 221 (643)
-..++.+|..|++ |+.-.....+......+-++.++.||+-.+... ......|+.||..+.+ |
T Consensus 130 ---------dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e----~g~~g~v~A~D~~TG~~~W 196 (599)
T 1w6s_A 130 ---------DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAE----LGVRGYLTAYDVKTGEQVW 196 (599)
T ss_dssp ---------TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGG----GTCCCEEEEEETTTCCEEE
T ss_pred ---------CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccc----cCCCCeEEEEECCCCcEEE
Confidence 1468899998875 875432100000111223456888776432111 0123578999998765 8
Q ss_pred EEecc
Q 006473 222 QEIKP 226 (643)
Q Consensus 222 ~~v~~ 226 (643)
+.-..
T Consensus 197 ~~~~~ 201 (599)
T 1w6s_A 197 RAYAT 201 (599)
T ss_dssp EEESS
T ss_pred EEcCC
Confidence 76543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=94.74 E-value=3 Score=42.32 Aligned_cols=62 Identities=5% Similarity=0.029 Sum_probs=30.9
Q ss_pred EEEEeCCCCeeEEeccCCCCCCCcee-eEEEEE-CCe-EEEeccccccccCccccccccCCcEEEEEC--CCCcEEEeEe
Q 006473 274 LWSLDPRTWEWSKVKKIGMPPGPRAG-FSMCVH-KKR-ALLFGGVVDMEMKGDVIMSLFLNELYGFQL--DNHRWYPLEL 348 (643)
Q Consensus 274 v~~yd~~t~~W~~l~~~g~~P~~R~g-~s~~~~-~~~-iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~--~t~~W~~l~~ 348 (643)
+.+|++.+..+..+......|....+ ..+++. +++ ||+.... . .+.|.+|++ .+.++..+..
T Consensus 235 v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~-~------------~~~i~v~~~~~~~g~~~~~~~ 301 (361)
T 3scy_A 235 VIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL-K------------ADGVAIFKVDETNGTLTKVGY 301 (361)
T ss_dssp EEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS-S------------SCEEEEEEECTTTCCEEEEEE
T ss_pred EEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC-C------------CCEEEEEEEcCCCCcEEEeeE
Confidence 67777767776655433222322222 233333 454 5443321 0 244677766 4667766654
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=94.66 E-value=1.8 Score=41.71 Aligned_cols=191 Identities=7% Similarity=0.007 Sum_probs=98.6
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCC
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~ 150 (643)
+.+++.+ ++.||+... .+.+++||+.......+.... ...-+.++.. ++.||+....
T Consensus 70 ~~i~~~~--~g~l~v~~~----------~~~i~~~d~~~~~~~~~~~~~---~~~p~~i~~~~~g~l~v~~~~------- 127 (270)
T 1rwi_B 70 QGLAVDG--AGTVYVTDF----------NNRVVTLAAGSNNQTVLPFDG---LNYPEGLAVDTQGAVYVADRG------- 127 (270)
T ss_dssp CCEEECT--TCCEEEEET----------TTEEEEECTTCSCCEECCCCS---CSSEEEEEECTTCCEEEEEGG-------
T ss_pred ceeEECC--CCCEEEEcC----------CCEEEEEeCCCceEeeeecCC---cCCCcceEECCCCCEEEEECC-------
Confidence 4455554 456776543 136888998877655443221 1122334443 5678887542
Q ss_pred cceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCC
Q 006473 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (643)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (643)
...+++|+..+.........+. ..-+++++. +++||+.... .+.|++||+....-......
T Consensus 128 ----~~~i~~~~~~~~~~~~~~~~~~---~~p~~i~~~~~g~l~v~~~~---------~~~i~~~~~~~~~~~~~~~~-- 189 (270)
T 1rwi_B 128 ----NNRVVKLAAGSKTQTVLPFTGL---NDPDGVAVDNSGNVYVTDTD---------NNRVVKLEAESNNQVVLPFT-- 189 (270)
T ss_dssp ----GTEEEEECTTCCSCEECCCCSC---CSCCCEEECTTCCEEEEEGG---------GTEEEEECTTTCCEEECCCS--
T ss_pred ----CCEEEEEECCCceeEeeccccC---CCceeEEEeCCCCEEEEECC---------CCEEEEEecCCCceEeeccc--
Confidence 2457888776655443322111 112234443 5678876432 35688999877653332211
Q ss_pred CCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CC
Q 006473 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KK 307 (643)
Q Consensus 230 ~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~ 307 (643)
.. ..-.+++.. ++.||+....... +++|++.+..-...... ....-.++++. ++
T Consensus 190 ---~~-~~p~~i~~d~~g~l~v~~~~~~~----------------v~~~~~~~~~~~~~~~~----~~~~p~~i~~~~~g 245 (270)
T 1rwi_B 190 ---DI-TAPWGIAVDEAGTVYVTEHNTNQ----------------VVKLLAGSTTSTVLPFT----GLNTPLAVAVDSDR 245 (270)
T ss_dssp ---SC-CSEEEEEECTTCCEEEEETTTSC----------------EEEECTTCSCCEECCCC----SCSCEEEEEECTTC
T ss_pred ---CC-CCceEEEECCCCCEEEEECCCCc----------------EEEEcCCCCcceeeccC----CCCCceeEEECCCC
Confidence 11 112234443 5578877644332 78888876543332211 11222344443 46
Q ss_pred eEEEeccccccccCccccccccCCcEEEEECCC
Q 006473 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (643)
Q Consensus 308 ~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (643)
+||+..... +.|.+|++..
T Consensus 246 ~l~v~~~~~--------------~~v~~~~~~~ 264 (270)
T 1rwi_B 246 TVYVADRGN--------------DRVVKLTSLE 264 (270)
T ss_dssp CEEEEEGGG--------------TEEEEECCCG
T ss_pred CEEEEECCC--------------CEEEEEcCCC
Confidence 788775532 4577777653
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=94.62 E-value=4.1 Score=42.71 Aligned_cols=153 Identities=11% Similarity=0.041 Sum_probs=76.4
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEE
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~ 213 (643)
++..++.|+.. ..+.+||+.+.+-...-. .. .....+..+.+.+++.|+.+ ..+.+
T Consensus 288 ~~~~l~~~~~d-----------~~i~i~d~~~~~~~~~~~--~~--~~~v~~~~~~~~~l~~~~~d---------g~i~v 343 (445)
T 2ovr_B 288 DGIHVVSGSLD-----------TSIRVWDVETGNCIHTLT--GH--QSLTSGMELKDNILVSGNAD---------STVKI 343 (445)
T ss_dssp CSSEEEEEETT-----------SCEEEEETTTCCEEEEEC--CC--CSCEEEEEEETTEEEEEETT---------SCEEE
T ss_pred CCCEEEEEeCC-----------CeEEEEECCCCCEEEEEc--CC--cccEEEEEEeCCEEEEEeCC---------CeEEE
Confidence 55555666542 357888887765432211 11 11122233344555666642 46888
Q ss_pred EEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEecc-CCC
Q 006473 214 FDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK-IGM 292 (643)
Q Consensus 214 yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~-~g~ 292 (643)
||+.+.+-...-..+ .........+.+++.+++.|+.++. +.+||+.+.+....-. ...
T Consensus 344 wd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~l~s~~~dg~----------------v~iwd~~~~~~~~~~~~~~~ 403 (445)
T 2ovr_B 344 WDIKTGQCLQTLQGP----NKHQSAVTCLQFNKNFVITSSDDGT----------------VKLWDLKTGEFIRNLVTLES 403 (445)
T ss_dssp EETTTCCEEEEECST----TSCSSCEEEEEECSSEEEEEETTSE----------------EEEEETTTCCEEEEEEECTT
T ss_pred EECCCCcEEEEEccC----CCCCCCEEEEEECCCEEEEEeCCCe----------------EEEEECCCCceeeeeecccc
Confidence 998776532221110 0111112233346677788877654 7888988776544321 100
Q ss_pred CCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCC
Q 006473 293 PPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (643)
Q Consensus 293 ~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (643)
.+..-.-.++++. ++.++++|+.++. .-..|++||...
T Consensus 404 ~~~~~~v~~~~~s~~~~~la~~~~dg~----------~~~~l~v~df~~ 442 (445)
T 2ovr_B 404 GGSGGVVWRIRASNTKLVCAVGSRNGT----------EETKLLVLDFDV 442 (445)
T ss_dssp GGGTCEEEEEEECSSEEEEEEECSSSS----------SCCEEEEEECCC
T ss_pred CCCCceEEEEEecCCEEEEEEcccCCC----------CccEEEEEECCC
Confidence 0111122333444 4556667765431 134588888765
|
| >1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.98 Score=48.76 Aligned_cols=59 Identities=19% Similarity=0.400 Sum_probs=41.1
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~ 160 (643)
++++|+|-| +..|+||..++......-+..| . --++....+.+|+|-| +..|+
T Consensus 158 ~~~~yfFkG-----------~~yw~yd~~~~~~~~~~w~gi~--~-iDAA~~~~g~~YfFkG-------------~~y~r 210 (460)
T 1qhu_A 158 DEGILFFQG-----------NRKWFWDLTTGTKKERSWPAVG--N-CTSALRWLGRYYCFQG-------------NQFLR 210 (460)
T ss_dssp SSEEEEEET-----------TEEEEEETTTTEEEEECCTTSC--C-CSEEEEETTEEEEEET-------------TEEEE
T ss_pred CCeEEEEec-----------ccEEEEecccceeecccCCCCC--c-cchheeeCCceEEEEC-------------CEEEE
Confidence 577888888 3679999998876643333333 3 3455556899999988 46788
Q ss_pred EECCCC
Q 006473 161 LDLKTN 166 (643)
Q Consensus 161 yD~~t~ 166 (643)
||..+.
T Consensus 211 fd~~~~ 216 (460)
T 1qhu_A 211 FNPVSG 216 (460)
T ss_dssp ECTTTC
T ss_pred EcCccC
Confidence 887654
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=94.57 E-value=4.6 Score=42.36 Aligned_cols=173 Identities=11% Similarity=0.073 Sum_probs=89.1
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~ 159 (643)
++.+++.|+. -+.+.+||+.+.+-...-... ...-.+++.. ++..++.|+.. ..+.
T Consensus 279 ~~~~l~~~~~---------d~~i~vwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~sg~~d-----------g~i~ 335 (464)
T 3v7d_B 279 HGNIVVSGSY---------DNTLIVWDVAQMKCLYILSGH---TDRIYSTIYDHERKRCISASMD-----------TTIR 335 (464)
T ss_dssp ETTEEEEEET---------TSCEEEEETTTTEEEEEECCC---SSCEEEEEEETTTTEEEEEETT-----------SCEE
T ss_pred CCCEEEEEeC---------CCeEEEEECCCCcEEEEecCC---CCCEEEEEEcCCCCEEEEEeCC-----------CcEE
Confidence 3556666762 246889999877644332211 1112223332 45566666642 3588
Q ss_pred EEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccce
Q 006473 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGF 239 (643)
Q Consensus 160 ~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~ 239 (643)
+||+.+.+-...-. .....-.++.+.+..++.|+.+ ..+.+||+.+..-...... ......
T Consensus 336 vwd~~~~~~~~~~~----~h~~~v~~~~~~~~~l~s~s~d---------g~v~vwd~~~~~~~~~~~~------~~~~~~ 396 (464)
T 3v7d_B 336 IWDLENGELMYTLQ----GHTALVGLLRLSDKFLVSAAAD---------GSIRGWDANDYSRKFSYHH------TNLSAI 396 (464)
T ss_dssp EEETTTTEEEEEEC----CCSSCEEEEEECSSEEEEEETT---------SEEEEEETTTCCEEEEEEC------TTCCCE
T ss_pred EEECCCCcEEEEEe----CCCCcEEEEEEcCCEEEEEeCC---------CcEEEEECCCCceeeeecC------CCCccE
Confidence 89998765432211 1112223444566666666642 3588889887553222211 111222
Q ss_pred eEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccc
Q 006473 240 QFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGV 315 (643)
Q Consensus 240 s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~ 315 (643)
.+...++.+++.|+ ++. +.+||+.+.+-...... +....-.+++..++.+++.|+.
T Consensus 397 ~~~~~~~~~l~~~~-dg~----------------i~iwd~~~g~~~~~~~~---~~~~~v~~v~~~~~~l~~~~~~ 452 (464)
T 3v7d_B 397 TTFYVSDNILVSGS-ENQ----------------FNIYNLRSGKLVHANIL---KDADQIWSVNFKGKTLVAAVEK 452 (464)
T ss_dssp EEEEECSSEEEEEE-TTE----------------EEEEETTTCCEEESCTT---TTCSEEEEEEEETTEEEEEEEE
T ss_pred EEEEeCCCEEEEec-CCe----------------EEEEECCCCcEEehhhc---cCCCcEEEEEecCCEEEEEEEe
Confidence 23333666666666 433 78899888765443221 1222233445556666666554
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=94.56 E-value=2.2 Score=42.40 Aligned_cols=185 Identities=11% Similarity=0.064 Sum_probs=92.4
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCc--EEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCe
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKD 157 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~--W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~d 157 (643)
.+++++.|.. -+.++.+|+.+++ |+.-.. .....|.+... ++.||+.+. +.
T Consensus 4 ~~~~lv~~~~---------~~~v~~~d~~tG~~~w~~~~~----~~~~~~~~~~~pdG~ilvs~~-------------~~ 57 (276)
T 3no2_A 4 PQHLLVGGSG---------WNKIAIINKDTKEIVWEYPLE----KGWECNSVAATKAGEILFSYS-------------KG 57 (276)
T ss_dssp CCEEEEECTT---------CSEEEEEETTTTEEEEEEECC----TTCCCCEEEECTTSCEEEECB-------------SE
T ss_pred CCcEEEeeCC---------CCEEEEEECCCCeEEEEeCCC----ccCCCcCeEECCCCCEEEeCC-------------CC
Confidence 3677777762 2578899987774 664322 11122333333 777777321 45
Q ss_pred EEEEECCCC--cEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCC-ceEEeccCCCCCCC
Q 006473 158 FWMLDLKTN--QWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF-KWQEIKPRFGSMWP 233 (643)
Q Consensus 158 v~~yD~~t~--~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~-~W~~v~~~~~~~~P 233 (643)
++.||+ ++ .|+.-. +....-+++... ++.+++..+. . ...++.+|+... .|+..... ....+
T Consensus 58 V~~~d~-~G~~~W~~~~----~~~~~~~~~~~~~dG~~lv~~~~-~-------~~~v~~vd~~Gk~l~~~~~~~-~~~~~ 123 (276)
T 3no2_A 58 AKMITR-DGRELWNIAA----PAGCEMQTARILPDGNALVAWCG-H-------PSTILEVNMKGEVLSKTEFET-GIERP 123 (276)
T ss_dssp EEEECT-TSCEEEEEEC----CTTCEEEEEEECTTSCEEEEEES-T-------TEEEEEECTTSCEEEEEEECC-SCSSG
T ss_pred EEEECC-CCCEEEEEcC----CCCccccccEECCCCCEEEEecC-C-------CCEEEEEeCCCCEEEEEeccC-CCCcc
Confidence 888998 44 366432 211222334443 5555554331 0 135777887433 24432211 00001
Q ss_pred CCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCC-CeeEEeccCCCCCCCceeeEEEEE-CCeEEE
Q 006473 234 SPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT-WEWSKVKKIGMPPGPRAGFSMCVH-KKRALL 311 (643)
Q Consensus 234 ~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t-~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyv 311 (643)
...........++.+++.....+ .+.+||+.. ..|+.-.. ..| +++++. ++.+||
T Consensus 124 ~~~~~~v~~~~~G~~lv~~~~~~----------------~v~~~d~~G~~~w~~~~~--~~~-----~~~~~~~~g~~~v 180 (276)
T 3no2_A 124 HAQFRQINKNKKGNYLVPLFATS----------------EVREIAPNGQLLNSVKLS--GTP-----FSSAFLDNGDCLV 180 (276)
T ss_dssp GGSCSCCEECTTSCEEEEETTTT----------------EEEEECTTSCEEEEEECS--SCC-----CEEEECTTSCEEE
T ss_pred cccccCceECCCCCEEEEecCCC----------------EEEEECCCCCEEEEEECC--CCc-----cceeEcCCCCEEE
Confidence 11111112223555665544332 378888863 35665432 111 233344 678888
Q ss_pred eccccccccCccccccccCCcEEEEECCCCc
Q 006473 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
++... +.|+.||+.+.+
T Consensus 181 ~~~~~--------------~~v~~~d~~tG~ 197 (276)
T 3no2_A 181 ACGDA--------------HCFVQLNLESNR 197 (276)
T ss_dssp ECBTT--------------SEEEEECTTTCC
T ss_pred EeCCC--------------CeEEEEeCcCCc
Confidence 76532 359999999764
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.84 Score=46.20 Aligned_cols=61 Identities=11% Similarity=-0.026 Sum_probs=34.5
Q ss_pred cEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEecc
Q 006473 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL 173 (643)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~ 173 (643)
.+|.+|..++++..+.... ....-..++.. +++||+.+.... -..+++|++.+..++.+..
T Consensus 19 ~v~~~d~~tg~~~~~~~~~--~~~~p~~~a~spdg~l~~~~~~~~---------~~~v~~~~~~~g~~~~~~~ 80 (347)
T 3hfq_A 19 YQGTLDTTAKTLTNDGLLA--ATQNPTYLALSAKDCLYSVDKEDD---------EGGIAAWQIDGQTAHKLNT 80 (347)
T ss_dssp EEEEEETTTTEEEEEEEEE--ECSCCCCEEECTTCEEEEEEEETT---------EEEEEEEEEETTEEEEEEE
T ss_pred EEEEEcCCCCeEEEeeeee--ccCCcceEEEccCCeEEEEEecCC---------CceEEEEEecCCcEEEeee
Confidence 4788888888887653211 01111122222 567777653211 2568899988888776643
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.53 E-value=1.3 Score=50.61 Aligned_cols=194 Identities=11% Similarity=-0.006 Sum_probs=95.8
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCc
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~ 151 (643)
++...| ++.++++||. .+.+.+||..+++....-... ...-.+++.. ++..++.|+..
T Consensus 60 ~~~~s~--~~~~l~~~~~---------dg~i~vw~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~d------- 118 (814)
T 3mkq_A 60 AGKFIA--RKNWIIVGSD---------DFRIRVFNYNTGEKVVDFEAH---PDYIRSIAVHPTKPYVLSGSDD------- 118 (814)
T ss_dssp EEEEEG--GGTEEEEEET---------TSEEEEEETTTCCEEEEEECC---SSCEEEEEECSSSSEEEEEETT-------
T ss_pred EEEEeC--CCCEEEEEeC---------CCeEEEEECCCCcEEEEEecC---CCCEEEEEEeCCCCEEEEEcCC-------
Confidence 344555 5667777772 246889999888765432211 1111222222 44455566532
Q ss_pred ceecCeEEEEECCCC-cEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCC
Q 006473 152 FHHYKDFWMLDLKTN-QWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~-~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (643)
..+.+||+.++ .....-. + . ...-.+++.. ++.+++.|+.+ ..+.+||+.+..-......
T Consensus 119 ----g~i~vw~~~~~~~~~~~~~-~-~-~~~v~~~~~~p~~~~~l~~~~~d---------g~v~vwd~~~~~~~~~~~~- 181 (814)
T 3mkq_A 119 ----LTVKLWNWENNWALEQTFE-G-H-EHFVMCVAFNPKDPSTFASGCLD---------RTVKVWSLGQSTPNFTLTT- 181 (814)
T ss_dssp ----SEEEEEEGGGTSEEEEEEE-C-C-SSCEEEEEEETTEEEEEEEEETT---------SEEEEEETTCSSCSEEEEC-
T ss_pred ----CEEEEEECCCCceEEEEEc-C-C-CCcEEEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCcceeEEec-
Confidence 35778888765 3322211 1 1 1111222332 35677776642 4588888865442222111
Q ss_pred CCCCCCCccceeEEEe---CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE
Q 006473 229 GSMWPSPRSGFQFFVY---QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (643)
Q Consensus 229 ~~~~P~~R~~~s~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~ 305 (643)
.......+++.. ++.+++.|+.++. +.+||+.+..-...-.. . ...-.++++.
T Consensus 182 ----~~~~~v~~~~~~~~~~~~~l~~~~~dg~----------------i~~~d~~~~~~~~~~~~---~-~~~v~~~~~~ 237 (814)
T 3mkq_A 182 ----GQERGVNYVDYYPLPDKPYMITASDDLT----------------IKIWDYQTKSCVATLEG---H-MSNVSFAVFH 237 (814)
T ss_dssp ----CCTTCCCEEEECCSTTCCEEEEECTTSE----------------EEEEETTTTEEEEEEEC---C-SSCEEEEEEC
T ss_pred ----CCCCCEEEEEEEECCCCCEEEEEeCCCE----------------EEEEECCCCcEEEEEcC---C-CCCEEEEEEc
Confidence 111111122222 5667777776554 77888776653322111 1 1112233333
Q ss_pred -CCeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 306 -~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
++.+++.|+.. +.|.+||+.+.+
T Consensus 238 ~~~~~l~~~~~d--------------g~v~vwd~~~~~ 261 (814)
T 3mkq_A 238 PTLPIIISGSED--------------GTLKIWNSSTYK 261 (814)
T ss_dssp SSSSEEEEEETT--------------SCEEEEETTTCS
T ss_pred CCCCEEEEEeCC--------------CeEEEEECCCCc
Confidence 46677777653 347778877654
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.94 Score=45.87 Aligned_cols=195 Identities=12% Similarity=0.064 Sum_probs=88.7
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCC--CcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecC
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEK--QEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYK 156 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~--~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~ 156 (643)
++.+++.|+. + ..+.+||+.. ..+..+.... ........+.+ ++.+++.|+.. .
T Consensus 118 ~g~~las~s~--D-------~~v~iwd~~~~~~~~~~~~~~~--~h~~~v~~v~~~p~~~~l~s~s~D-----------~ 175 (330)
T 2hes_X 118 DGYYLATCSR--D-------KSVWIWETDESGEEYECISVLQ--EHSQDVKHVIWHPSEALLASSSYD-----------D 175 (330)
T ss_dssp TSCEEEEEET--T-------SCEEEEECCTTCCCCEEEEEEC--CCSSCEEEEEECSSSSEEEEEETT-----------S
T ss_pred CCCEEEEEeC--C-------CEEEEEeccCCCCCeEEEEEec--cCCCceEEEEECCCCCEEEEEcCC-----------C
Confidence 4566666662 2 3577888743 2344332111 01111222333 45667777653 2
Q ss_pred eEEEEECCCCcEEEeccCCCCCCCceeEEEEE-C--CEEEEEeeeecCCCceeeeccEEEEEcCC------CceEEeccC
Q 006473 157 DFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-K--HKIIVFGGFYDTLREVRYYNDLYVFDLDQ------FKWQEIKPR 227 (643)
Q Consensus 157 dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~--~~lyvfGG~~~~~~~~~~~~dv~~yD~~t------~~W~~v~~~ 227 (643)
.+.++|..+..|..+.......... .++... + +.+++.|+.+ ..+.+||+.. ..|..+...
T Consensus 176 ~i~iW~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~s~D---------~~v~iw~~~~~~~~~~~~~~~~~~~ 245 (330)
T 2hes_X 176 TVRIWKDYDDDWECVAVLNGHEGTV-WSSDFDKTEGVFRLCSGSDD---------STVRVWKYMGDDEDDQQEWVCEAIL 245 (330)
T ss_dssp CEEEEEEETTEEEEEEEECCCSSCE-EEEEECCSSSSCEEEEEETT---------SCEEEEEEEEECTTSCEEEEEEEEC
T ss_pred eEEEEECCCCCeeEEEEccCCCCcE-EEEEecCCCCeeEEEEEeCC---------CeEEEEEecCCCccccceeEEeeec
Confidence 4666777667676554311111111 112221 2 3455556543 2344454432 245554443
Q ss_pred CCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE--
Q 006473 228 FGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-- 305 (643)
Q Consensus 228 ~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-- 305 (643)
+. .....-.+++...+.+++.||.++. +.+|+..+..|..+...........-.+++..
T Consensus 246 ~~---~h~~~v~~v~~s~~~~l~s~~~dg~----------------v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~ 306 (330)
T 2hes_X 246 PD---VHKRQVYNVAWGFNGLIASVGADGV----------------LAVYEEVDGEWKVFAKRALCHGVYEINVVKWLEL 306 (330)
T ss_dssp CS---CCSSCEEEEEECTTSCEEEEETTSC----------------EEEEEEETTEEEEEEEESCTTTTSCEEEEEEC--
T ss_pred cc---ccccceEEEEEcCCCEEEEEeCCCE----------------EEEEEcCCCceEEEeccccccccceEEEEEEecC
Confidence 11 1122222333334557777777655 66777777778665332110111012223332
Q ss_pred -CCeEEEeccccccccCccccccccCCcEEEEECCC
Q 006473 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (643)
Q Consensus 306 -~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (643)
++.+++.||.+ ..|.+||+.+
T Consensus 307 ~~~~~las~s~D--------------g~v~~W~~~~ 328 (330)
T 2hes_X 307 NGKTILATGGDD--------------GIVNFWSLEK 328 (330)
T ss_dssp ---CCEEEEETT--------------SEEEEEEC--
T ss_pred CCceEEEEecCC--------------CcEEEEEecc
Confidence 46777788754 2477777653
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=94.49 E-value=0.77 Score=45.79 Aligned_cols=60 Identities=10% Similarity=0.082 Sum_probs=28.9
Q ss_pred ccEEEEECC-CCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECC--CCcEEEecc
Q 006473 101 GDLYRYDVE-KQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLK--TNQWEQLNL 173 (643)
Q Consensus 101 ndv~~yd~~-~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~--t~~W~~~~~ 173 (643)
+.+++|++. ++++..+.... ....-+.++.. +..||+.+... ..+.+|++. ++.+..+..
T Consensus 15 ~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~-----------~~v~~~~~~~~~~~~~~~~~ 79 (343)
T 1ri6_A 15 QQIHVWNLNHEGALTLTQVVD--VPGQVQPMVVSPDKRYLYVGVRPE-----------FRVLAYRIAPDDGALTFAAE 79 (343)
T ss_dssp TEEEEEEECTTSCEEEEEEEE--CSSCCCCEEECTTSSEEEEEETTT-----------TEEEEEEECTTTCCEEEEEE
T ss_pred CeEEEEEECCCCcEEEeeeEe--cCCCCceEEECCCCCEEEEeecCC-----------CeEEEEEecCCCCceeeccc
Confidence 467788774 44555442211 11112223332 44566655421 345565554 777776544
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=94.47 E-value=6.4 Score=44.45 Aligned_cols=199 Identities=11% Similarity=0.007 Sum_probs=100.5
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCc-eeeEEEEECCEEEEEeCccCCC-CCCcceecCeEEEEECCCCcE--EEeccCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPR-SAHQAVSWKNYLYIFGGEFTSP-NQERFHHYKDFWMLDLKTNQW--EQLNLKGC 176 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pR-s~ha~~~~~~~iyvfGG~~~~~-~~~~~~~~~dv~~yD~~t~~W--~~~~~~g~ 176 (643)
..|+++|+.+++...... +..+ .+.++. -+..||...-..... ..........||++++.+..= ..+.. .
T Consensus 155 ~~i~v~dl~tg~~~~~~~---~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~--~ 228 (693)
T 3iuj_A 155 REIHLMDVESKQPLETPL---KDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFG--A 228 (693)
T ss_dssp EEEEEEETTTCSEEEEEE---EEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEES--C
T ss_pred EEEEEEECCCCCCCcccc---CCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEe--c
Confidence 478999999998765532 1111 223333 334455443221100 000001235789999877653 12211 1
Q ss_pred CC--CCceeEEEE-ECC-EEEEEeeeecCCCceeeeccEEEEEcCCC--ceEEeccCCCCCCCCCccceeEEEeCCEEEE
Q 006473 177 PS--PRSGHRMVL-YKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQF--KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFL 250 (643)
Q Consensus 177 P~--~Rs~h~~~~-~~~-~lyvfGG~~~~~~~~~~~~dv~~yD~~t~--~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv 250 (643)
+. +........ -++ +|++.... .. ..+.+|++|+.+. .|..+... ...... .+...++.||+
T Consensus 229 ~~~~~~~~~~~~~SpDg~~l~~~~~~-~~-----~~~~i~~~d~~~~~~~~~~l~~~-----~~~~~~-~~~~~g~~l~~ 296 (693)
T 3iuj_A 229 IPAQHHRYVGATVTEDDRFLLISAAN-ST-----SGNRLYVKDLSQENAPLLTVQGD-----LDADVS-LVDNKGSTLYL 296 (693)
T ss_dssp SGGGCCSEEEEEECTTSCEEEEEEES-SS-----SCCEEEEEETTSTTCCCEEEECS-----SSSCEE-EEEEETTEEEE
T ss_pred CCCCCeEEEEEEEcCCCCEEEEEEcc-CC-----CCcEEEEEECCCCCCceEEEeCC-----CCceEE-EEeccCCEEEE
Confidence 21 222222222 244 44443322 11 1368999998765 68777654 122211 13445889998
Q ss_pred EcCCCCCCCCccCCCCCCceeeeEEEEeCCCC---eeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCcccccc
Q 006473 251 YGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW---EWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMS 327 (643)
Q Consensus 251 ~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~---~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~ 327 (643)
....... ...++.+++.+. .|+.+.+.. + ... +....++.|++..-...
T Consensus 297 ~t~~~~~-------------~~~l~~~d~~~~~~~~~~~l~~~~--~--~~~-~~s~~g~~lv~~~~~~g---------- 348 (693)
T 3iuj_A 297 LTNRDAP-------------NRRLVTVDAANPGPAHWRDLIPER--Q--QVL-TVHSGSGYLFAEYMVDA---------- 348 (693)
T ss_dssp EECTTCT-------------TCEEEEEETTSCCGGGCEEEECCC--S--SCE-EEEEETTEEEEEEEETT----------
T ss_pred EECCCCC-------------CCEEEEEeCCCCCccccEEEecCC--C--CEE-EEEEECCEEEEEEEECC----------
Confidence 8764321 245888887653 488775421 1 122 55555676665543221
Q ss_pred ccCCcEEEEECCCCcEEEeE
Q 006473 328 LFLNELYGFQLDNHRWYPLE 347 (643)
Q Consensus 328 ~~~ndl~~yd~~t~~W~~l~ 347 (643)
...|+++++.+.....+.
T Consensus 349 --~~~l~~~d~~g~~~~~l~ 366 (693)
T 3iuj_A 349 --TARVEQFDYEGKRVREVA 366 (693)
T ss_dssp --EEEEEEECTTSCEEEEEC
T ss_pred --eeEEEEEECCCCeeEEee
Confidence 346888888765444443
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=94.38 E-value=0.88 Score=47.74 Aligned_cols=51 Identities=10% Similarity=-0.041 Sum_probs=27.4
Q ss_pred EEEEeCCCCeeEEeccCCCCCCCceeeEEEEE--CCeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 274 LWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 274 v~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
+.+||+.+..-...... .....+++.. ++.+++.+|..+ +.|.+||+.+.+
T Consensus 303 I~iwd~~t~~~~~~~~~-----~~~v~~~~~~~~~~~lv~~sg~~d-------------~~I~iwd~~~~~ 355 (420)
T 4gga_A 303 IRIWNVCSGACLSAVDA-----HSQVCSILWSPHYKELISGHGFAQ-------------NQLVIWKYPTMA 355 (420)
T ss_dssp EEEEETTTTEEEEEEEC-----SSCEEEEEEETTTTEEEEEECTTT-------------CCEEEEETTTCC
T ss_pred EEEEeCCccccceeecc-----ccceeeeeecCCCCeEEEEEecCC-------------CEEEEEECCCCc
Confidence 67888877654443321 1112233333 345555555432 458999987643
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.37 E-value=3.3 Score=41.65 Aligned_cols=175 Identities=9% Similarity=0.033 Sum_probs=89.5
Q ss_pred ccEEEEECCCCcEEE-ecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCC
Q 006473 101 GDLYRYDVEKQEWKV-ISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (643)
Q Consensus 101 ndv~~yd~~~~~W~~-l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (643)
..+..||+.+.+-.. +.... . ...+++.. ++.+++.|+.. ..+.+||+.+..-...-. ..
T Consensus 102 ~~i~lWd~~~~~~~~~~~~~~--~--~~~~~~~spdg~~l~~g~~d-----------g~v~i~~~~~~~~~~~~~---~~ 163 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKSIDAGP--V--DAWTLAFSPDSQYLATGTHV-----------GKVNIFGVESGKKEYSLD---TR 163 (321)
T ss_dssp SEEEEEETTTTEEEEEEECCT--T--CCCCEEECTTSSEEEEECTT-----------SEEEEEETTTCSEEEEEE---CS
T ss_pred CcEEEEECCCCCEEEEEeCCC--c--cEEEEEECCCCCEEEEEcCC-----------CcEEEEEcCCCceeEEec---CC
Confidence 467788888775432 22211 1 11122222 55666777642 457788887765332211 11
Q ss_pred CCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCC
Q 006473 179 PRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSK 256 (643)
Q Consensus 179 ~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~ 256 (643)
...-.+++.. ++.+++.|+.+ ..+.+||+.+.+-.. ..... ..+. .+++.. ++.+++.|+.++
T Consensus 164 ~~~v~~~~~spdg~~lasg~~d---------g~i~iwd~~~~~~~~--~~~~h--~~~v--~~l~~spd~~~l~s~s~dg 228 (321)
T 3ow8_A 164 GKFILSIAYSPDGKYLASGAID---------GIINIFDIATGKLLH--TLEGH--AMPI--RSLTFSPDSQLLVTASDDG 228 (321)
T ss_dssp SSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTTEEEE--EECCC--SSCC--CEEEECTTSCEEEEECTTS
T ss_pred CceEEEEEECCCCCEEEEEcCC---------CeEEEEECCCCcEEE--EEccc--CCce--eEEEEcCCCCEEEEEcCCC
Confidence 1111222222 55666777643 458889988765322 22110 1111 122232 677888888776
Q ss_pred CCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEE
Q 006473 257 EVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYG 335 (643)
Q Consensus 257 ~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~ 335 (643)
. +.+||+.+......-. + ....-.++++. ++..++.|+.. ..|.+
T Consensus 229 ~----------------i~iwd~~~~~~~~~~~-~---h~~~v~~~~~sp~~~~l~s~s~D--------------~~v~i 274 (321)
T 3ow8_A 229 Y----------------IKIYDVQHANLAGTLS-G---HASWVLNVAFCPDDTHFVSSSSD--------------KSVKV 274 (321)
T ss_dssp C----------------EEEEETTTCCEEEEEC-C---CSSCEEEEEECTTSSEEEEEETT--------------SCEEE
T ss_pred e----------------EEEEECCCcceeEEEc-C---CCCceEEEEECCCCCEEEEEeCC--------------CcEEE
Confidence 5 7788887655433211 1 11112233333 56677777653 34889
Q ss_pred EECCCCc
Q 006473 336 FQLDNHR 342 (643)
Q Consensus 336 yd~~t~~ 342 (643)
||+.+.+
T Consensus 275 wd~~~~~ 281 (321)
T 3ow8_A 275 WDVGTRT 281 (321)
T ss_dssp EETTTTE
T ss_pred EeCCCCE
Confidence 9987653
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=94.36 E-value=1.7 Score=47.81 Aligned_cols=149 Identities=15% Similarity=0.140 Sum_probs=73.9
Q ss_pred CeEEEEECCCCcEEEe-ccCCC--------CCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEec
Q 006473 156 KDFWMLDLKTNQWEQL-NLKGC--------PSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~-~~~g~--------P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (643)
+.+.++|..+.+-... ...++ |.+|..+..+.. +..+|+-... .+.|+++|..+..-..+.
T Consensus 248 ~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~---------~g~i~vvd~~~~~~l~~~ 318 (543)
T 1nir_A 248 PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE---------TGKVLLVNYKDIDNLTVT 318 (543)
T ss_dssp SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT---------TTEEEEEECTTSSSCEEE
T ss_pred CeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC---------CCeEEEEEecCCCcceeE
Confidence 4677889887764332 22111 122322222222 3455544321 367889998765422222
Q ss_pred cCCCCCCCCCccceeEEEe-CC-EEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEE
Q 006473 226 PRFGSMWPSPRSGFQFFVY-QD-EVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC 303 (643)
Q Consensus 226 ~~~~~~~P~~R~~~s~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~ 303 (643)
.. +..+.-+.++.. ++ .+|+.+..+ +.+.++|+.+.+-...-..+..|.+..+...
T Consensus 319 ~i-----~~~~~~~~~~~spdg~~l~va~~~~----------------~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~- 376 (543)
T 1nir_A 319 SI-----GAAPFLHDGGWDSSHRYFMTAANNS----------------NKVAVIDSKDRRLSALVDVGKTPHPGRGANF- 376 (543)
T ss_dssp EE-----ECCSSCCCEEECTTSCEEEEEEGGG----------------TEEEEEETTTTEEEEEEECSSSBCCTTCEEE-
T ss_pred Ee-----ccCcCccCceECCCCCEEEEEecCC----------------CeEEEEECCCCeEEEeeccCCCCCCCCCccc-
Confidence 22 112222233333 33 455543322 2477899988876554443444444334433
Q ss_pred EE--CCeEEEeccccccccCccccccccCCcEEEEECCCC-----cEEEeEe
Q 006473 304 VH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH-----RWYPLEL 348 (643)
Q Consensus 304 ~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~-----~W~~l~~ 348 (643)
+. ++.+|+.+...+ +.|-+||+.+. .|..+..
T Consensus 377 ~~p~~g~~~~s~~~~d-------------~~V~v~d~~~~~~~~~~~~~v~~ 415 (543)
T 1nir_A 377 VHPKYGPVWSTSHLGD-------------GSISLIGTDPKNHPQYAWKKVAE 415 (543)
T ss_dssp EETTTEEEEEEEBSSS-------------SEEEEEECCTTTCTTTBTSEEEE
T ss_pred CCCCCccEEEeccCCC-------------ceEEEEEeCCCCCchhcCeEEEE
Confidence 33 367777664322 45888888772 2665544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.34 E-value=1.1 Score=51.16 Aligned_cols=151 Identities=9% Similarity=0.020 Sum_probs=77.8
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCc
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~ 151 (643)
++...| ++.++++|+. .+.+.+||..++.....-... +.+ -.+++.. ++..+++||..
T Consensus 18 ~i~~sp--~~~~la~~~~---------~g~v~iwd~~~~~~~~~~~~~-~~~--v~~~~~s~~~~~l~~~~~d------- 76 (814)
T 3mkq_A 18 GIDFHP--TEPWVLTTLY---------SGRVEIWNYETQVEVRSIQVT-ETP--VRAGKFIARKNWIIVGSDD------- 76 (814)
T ss_dssp EEEECS--SSSEEEEEET---------TSEEEEEETTTTEEEEEEECC-SSC--EEEEEEEGGGTEEEEEETT-------
T ss_pred EEEECC--CCCEEEEEeC---------CCEEEEEECCCCceEEEEecC-CCc--EEEEEEeCCCCEEEEEeCC-------
Confidence 344555 5677777772 246889998887654332211 111 1222222 45566666642
Q ss_pred ceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCC
Q 006473 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (643)
..+.+||..++.....-. ... ..-.++.+ ++..++.|+.+ ..+.+||+.+. |..+....
T Consensus 77 ----g~i~vw~~~~~~~~~~~~--~~~--~~v~~~~~s~~~~~l~~~~~d---------g~i~vw~~~~~-~~~~~~~~- 137 (814)
T 3mkq_A 77 ----FRIRVFNYNTGEKVVDFE--AHP--DYIRSIAVHPTKPYVLSGSDD---------LTVKLWNWENN-WALEQTFE- 137 (814)
T ss_dssp ----SEEEEEETTTCCEEEEEE--CCS--SCEEEEEECSSSSEEEEEETT---------SEEEEEEGGGT-SEEEEEEE-
T ss_pred ----CeEEEEECCCCcEEEEEe--cCC--CCEEEEEEeCCCCEEEEEcCC---------CEEEEEECCCC-ceEEEEEc-
Confidence 468889988877644322 111 11222233 45455566532 35788888765 22222221
Q ss_pred CCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCC
Q 006473 230 SMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (643)
Q Consensus 230 ~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (643)
.....-.+++.. ++.+++.|+.++. +.+||+.+.
T Consensus 138 ---~~~~~v~~~~~~p~~~~~l~~~~~dg~----------------v~vwd~~~~ 173 (814)
T 3mkq_A 138 ---GHEHFVMCVAFNPKDPSTFASGCLDRT----------------VKVWSLGQS 173 (814)
T ss_dssp ---CCSSCEEEEEEETTEEEEEEEEETTSE----------------EEEEETTCS
T ss_pred ---CCCCcEEEEEEEcCCCCEEEEEeCCCe----------------EEEEECCCC
Confidence 111111223333 4567777776654 778887554
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=94.34 E-value=2.1 Score=44.85 Aligned_cols=140 Identities=7% Similarity=-0.038 Sum_probs=68.3
Q ss_pred EEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcc
Q 006473 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERF 152 (643)
Q Consensus 74 ~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~ 152 (643)
+.+.| ++.+++.|+. -+.+.+||..+.+....-.+. ...-.+++.. ++.+++.||...
T Consensus 114 ~~~~p--~~~~l~s~s~---------Dg~i~vwd~~~~~~~~~l~~h---~~~V~~v~~~~~~~~l~sgs~D~------- 172 (410)
T 1vyh_C 114 VIFHP--VFSVMVSASE---------DATIKVWDYETGDFERTLKGH---TDSVQDISFDHSGKLLASCSADM------- 172 (410)
T ss_dssp EEECS--SSSEEEEEES---------SSCEEEEETTTCCCCEEECCC---SSCEEEEEECTTSSEEEEEETTS-------
T ss_pred EEEcC--CCCEEEEEeC---------CCeEEEEECCCCcEEEEEecc---CCcEEEEEEcCCCCEEEEEeCCC-------
Confidence 34444 5677888873 246888998877543321111 1111222222 566777777543
Q ss_pred eecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCC
Q 006473 153 HHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGS 230 (643)
Q Consensus 153 ~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~ 230 (643)
.+.+||+.+..-... +..-...-.++.+ ++..++.||.+ ..+.+||+.+..-...-..
T Consensus 173 ----~i~iwd~~~~~~~~~----~~~h~~~V~~v~~~p~~~~l~s~s~D---------~~i~~wd~~~~~~~~~~~~--- 232 (410)
T 1vyh_C 173 ----TIKLWDFQGFECIRT----MHGHDHNVSSVSIMPNGDHIVSASRD---------KTIKMWEVQTGYCVKTFTG--- 232 (410)
T ss_dssp ----CCCEEETTSSCEEEC----CCCCSSCEEEEEECSSSSEEEEEETT---------SEEEEEETTTCCEEEEEEC---
T ss_pred ----eEEEEeCCCCceeEE----EcCCCCCEEEEEEeCCCCEEEEEeCC---------CeEEEEECCCCcEEEEEeC---
Confidence 355677766543221 1111111122223 45566667642 4578889877653221111
Q ss_pred CCCCCccceeEEEe-CCEEEEEcCCCCC
Q 006473 231 MWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (643)
Q Consensus 231 ~~P~~R~~~s~~~~-~~~iyv~GG~~~~ 257 (643)
....-.++... ++.+++.|+.++.
T Consensus 233 ---h~~~v~~~~~~~~g~~l~s~s~D~~ 257 (410)
T 1vyh_C 233 ---HREWVRMVRPNQDGTLIASCSNDQT 257 (410)
T ss_dssp ---CSSCEEEEEECTTSSEEEEEETTSC
T ss_pred ---CCccEEEEEECCCCCEEEEEcCCCe
Confidence 11111122222 6677778877655
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=94.32 E-value=2.1 Score=42.60 Aligned_cols=200 Identities=7% Similarity=-0.005 Sum_probs=98.9
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcE--EEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCC
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW--KVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPN 148 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W--~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~ 148 (643)
.+++.|. +..||+.+. + .+.+++||+.+++. ..+.... .++ ++++.. +..|| .+.....
T Consensus 44 ~~~~s~d-g~~l~~~~~----~-----~~~i~~~d~~~~~~~~~~~~~~~--~~~--~~~~~s~dg~~l~-~~~~~~~-- 106 (331)
T 3u4y_A 44 DTAITSD-CSNVVVTSD----F-----CQTLVQIETQLEPPKVVAIQEGQ--SSM--ADVDITPDDQFAV-TVTGLNH-- 106 (331)
T ss_dssp EEEECSS-SCEEEEEES----T-----TCEEEEEECSSSSCEEEEEEECS--SCC--CCEEECTTSSEEE-ECCCSSS--
T ss_pred eEEEcCC-CCEEEEEeC----C-----CCeEEEEECCCCceeEEecccCC--CCc--cceEECCCCCEEE-EecCCCC--
Confidence 5555552 234666555 1 24789999988874 3333322 222 212222 45666 3322110
Q ss_pred CCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CC-EEEEEeeeecCCCceeeecc-EEEEEcCCCc-eEEe
Q 006473 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KH-KIIVFGGFYDTLREVRYYND-LYVFDLDQFK-WQEI 224 (643)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~-~lyvfGG~~~~~~~~~~~~d-v~~yD~~t~~-W~~v 224 (643)
...+++||+.+.+...... ....-+.+++. ++ +||+.+.. .+. +++|++.... ....
T Consensus 107 ------~~~i~v~d~~~~~~~~~~~----~~~~~~~~~~spdg~~l~~~~~~---------~~~~i~~~~~~~~g~~~~~ 167 (331)
T 3u4y_A 107 ------PFNMQSYSFLKNKFISTIP----IPYDAVGIAISPNGNGLILIDRS---------SANTVRRFKIDADGVLFDT 167 (331)
T ss_dssp ------SCEEEEEETTTTEEEEEEE----CCTTEEEEEECTTSSCEEEEEET---------TTTEEEEEEECTTCCEEEE
T ss_pred ------cccEEEEECCCCCeEEEEE----CCCCccceEECCCCCEEEEEecC---------CCceEEEEEECCCCcEeec
Confidence 1279999999887654432 12222444443 33 57766542 234 6667655321 1111
Q ss_pred --ccCCCCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCee---EEeccCCCCCCCc
Q 006473 225 --KPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW---SKVKKIGMPPGPR 297 (643)
Q Consensus 225 --~~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W---~~l~~~g~~P~~R 297 (643)
... +....-..++.. +..||+.+.... .+.+||+.+.+. ...-..+.
T Consensus 168 ~~~~~-----~~~~~~~~~~~spdg~~l~v~~~~~~----------------~v~v~d~~~~~~~~~~~~~~~~~----- 221 (331)
T 3u4y_A 168 GQEFI-----SGGTRPFNITFTPDGNFAFVANLIGN----------------SIGILETQNPENITLLNAVGTNN----- 221 (331)
T ss_dssp EEEEE-----CSSSSEEEEEECTTSSEEEEEETTTT----------------EEEEEECSSTTSCEEEEEEECSS-----
T ss_pred CCccc-----cCCCCccceEECCCCCEEEEEeCCCC----------------eEEEEECCCCcccceeeeccCCC-----
Confidence 111 111111233333 345777664433 378899877665 22211111
Q ss_pred eeeEEEEE-CCe-EEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 298 AGFSMCVH-KKR-ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 298 ~g~s~~~~-~~~-iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
.-..+++. +++ +|+.... .+.|++||+.+.+...+..
T Consensus 222 ~~~~~~~spdg~~l~v~~~~--------------~~~i~~~d~~~~~~~~~~~ 260 (331)
T 3u4y_A 222 LPGTIVVSRDGSTVYVLTES--------------TVDVFNFNQLSGTLSFVKS 260 (331)
T ss_dssp CCCCEEECTTSSEEEEECSS--------------EEEEEEEETTTTEEEEEEE
T ss_pred CCceEEECCCCCEEEEEEcC--------------CCEEEEEECCCCceeeecc
Confidence 11234444 444 6665432 1348999999988766554
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=94.21 E-value=1.1 Score=46.63 Aligned_cols=155 Identities=12% Similarity=-0.011 Sum_probs=76.1
Q ss_pred EEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEecc-CCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEE
Q 006473 136 YLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL-KGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLY 212 (643)
Q Consensus 136 ~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~-~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~ 212 (643)
.+++.|+.. ..+.+||+.+.+....-. .+ . .. ...++.+ ++.+++.|+. -..+.
T Consensus 145 ~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~~-~-~~-~v~~~~~~~~~~~l~~~~~---------d~~i~ 201 (402)
T 2aq5_A 145 NVLLSAGCD-----------NVILVWDVGTGAAVLTLGPDV-H-PD-TIYSVDWSRDGALICTSCR---------DKRVR 201 (402)
T ss_dssp TEEEEEETT-----------SCEEEEETTTTEEEEEECTTT-C-CS-CEEEEEECTTSSCEEEEET---------TSEEE
T ss_pred CEEEEEcCC-----------CEEEEEECCCCCccEEEecCC-C-CC-ceEEEEECCCCCEEEEEec---------CCcEE
Confidence 467777642 358899998887654321 11 1 11 1222333 5566666664 24688
Q ss_pred EEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCee--EEecc
Q 006473 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW--SKVKK 289 (643)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W--~~l~~ 289 (643)
+||+.+..-...-.... ...+. ..++.. ++.+++.|.... ....+.+||+.+..- .....
T Consensus 202 iwd~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~l~~g~~~~-------------~d~~i~iwd~~~~~~~~~~~~~ 264 (402)
T 2aq5_A 202 VIEPRKGTVVAEKDRPH---EGTRP-VHAVFVSEGKILTTGFSRM-------------SERQVALWDTKHLEEPLSLQEL 264 (402)
T ss_dssp EEETTTTEEEEEEECSS---CSSSC-CEEEECSTTEEEEEEECTT-------------CCEEEEEEETTBCSSCSEEEEC
T ss_pred EEeCCCCceeeeeccCC---CCCcc-eEEEEcCCCcEEEEeccCC-------------CCceEEEEcCccccCCceEEec
Confidence 99998765433221100 11111 222222 677777762110 113478888765431 11111
Q ss_pred CCCCCCCceeeEEEEE-C-CeEEEeccccccccCccccccccCCcEEEEECCCCc--EEEeEe
Q 006473 290 IGMPPGPRAGFSMCVH-K-KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR--WYPLEL 348 (643)
Q Consensus 290 ~g~~P~~R~g~s~~~~-~-~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~--W~~l~~ 348 (643)
+....-.++++. + ..+++.|+.. +.|.+||+.+.. ...+..
T Consensus 265 ----~~~~~v~~~~~s~~~~~l~~~g~~d--------------g~i~i~d~~~~~~~~~~l~~ 309 (402)
T 2aq5_A 265 ----DTSSGVLLPFFDPDTNIVYLCGKGD--------------SSIRYFEITSEAPFLHYLSM 309 (402)
T ss_dssp ----CCCSSCEEEEEETTTTEEEEEETTC--------------SCEEEEEECSSTTCEEEEEE
T ss_pred ----cCCCceeEEEEcCCCCEEEEEEcCC--------------CeEEEEEecCCCcceEeecc
Confidence 111122334444 3 4455566432 358899988776 444443
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=94.17 E-value=5.9 Score=40.71 Aligned_cols=105 Identities=7% Similarity=0.055 Sum_probs=54.7
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~ 159 (643)
++.+++.|+. -+.+.+||+.+..-...-.. ....-.+++.. ++.+++.|+.. ..+.
T Consensus 108 ~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~s~d-----------~~i~ 164 (420)
T 3vl1_A 108 QMRRFILGTT---------EGDIKVLDSNFNLQREIDQA---HVSEITKLKFFPSGEALISSSQD-----------MQLK 164 (420)
T ss_dssp SSCEEEEEET---------TSCEEEECTTSCEEEEETTS---SSSCEEEEEECTTSSEEEEEETT-----------SEEE
T ss_pred CCCEEEEEEC---------CCCEEEEeCCCcceeeeccc---ccCccEEEEECCCCCEEEEEeCC-----------CeEE
Confidence 5677777772 24678889887765544221 11222223332 45566666642 4588
Q ss_pred EEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 160 ~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
+||+.+.+-...-. .....-.+++.. ++.+++.|+.+ ..+.+||+.+.+
T Consensus 165 iwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~d---------~~v~iwd~~~~~ 214 (420)
T 3vl1_A 165 IWSVKDGSNPRTLI---GHRATVTDIAIIDRGRNVLSASLD---------GTIRLWECGTGT 214 (420)
T ss_dssp EEETTTCCCCEEEE---CCSSCEEEEEEETTTTEEEEEETT---------SCEEEEETTTTE
T ss_pred EEeCCCCcCceEEc---CCCCcEEEEEEcCCCCEEEEEcCC---------CcEEEeECCCCc
Confidence 88987654221110 011111222232 45556666642 357888887664
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.16 E-value=3.1 Score=41.85 Aligned_cols=163 Identities=10% Similarity=0.038 Sum_probs=79.7
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (643)
+.+.+|+..+..-...-.. ....-.+++.. ++.+++.|+.. ..+.+||+.+.+-...-. +...+
T Consensus 144 g~v~i~~~~~~~~~~~~~~---~~~~v~~~~~spdg~~lasg~~d-----------g~i~iwd~~~~~~~~~~~-~h~~~ 208 (321)
T 3ow8_A 144 GKVNIFGVESGKKEYSLDT---RGKFILSIAYSPDGKYLASGAID-----------GIINIFDIATGKLLHTLE-GHAMP 208 (321)
T ss_dssp SEEEEEETTTCSEEEEEEC---SSSCEEEEEECTTSSEEEEEETT-----------SCEEEEETTTTEEEEEEC-CCSSC
T ss_pred CcEEEEEcCCCceeEEecC---CCceEEEEEECCCCCEEEEEcCC-----------CeEEEEECCCCcEEEEEc-ccCCc
Confidence 3577788776643322111 11111222222 56666777643 357889998876433211 11111
Q ss_pred CceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCC
Q 006473 180 RSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSK 256 (643)
Q Consensus 180 Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~ 256 (643)
-.++.+ ++.+++.|+.+ ..+.+||+.+......-.. ....-.+++.. ++.+++.|+.++
T Consensus 209 ---v~~l~~spd~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~------h~~~v~~~~~sp~~~~l~s~s~D~ 270 (321)
T 3ow8_A 209 ---IRSLTFSPDSQLLVTASDD---------GYIKIYDVQHANLAGTLSG------HASWVLNVAFCPDDTHFVSSSSDK 270 (321)
T ss_dssp ---CCEEEECTTSCEEEEECTT---------SCEEEEETTTCCEEEEECC------CSSCEEEEEECTTSSEEEEEETTS
T ss_pred ---eeEEEEcCCCCEEEEEcCC---------CeEEEEECCCcceeEEEcC------CCCceEEEEECCCCCEEEEEeCCC
Confidence 112233 56677777642 3578889876654322111 11111222222 566777888766
Q ss_pred CCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEecccc
Q 006473 257 EVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVV 316 (643)
Q Consensus 257 ~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~ 316 (643)
. +.+||+.+.+-...-. + ....-.++++. ++..++.||..
T Consensus 271 ~----------------v~iwd~~~~~~~~~~~-~---h~~~v~~v~~s~~g~~l~s~~~d 311 (321)
T 3ow8_A 271 S----------------VKVWDVGTRTCVHTFF-D---HQDQVWGVKYNGNGSKIVSVGDD 311 (321)
T ss_dssp C----------------EEEEETTTTEEEEEEC-C---CSSCEEEEEECTTSSEEEEEETT
T ss_pred c----------------EEEEeCCCCEEEEEEc-C---CCCcEEEEEECCCCCEEEEEeCC
Confidence 5 7788887654332211 1 11122334443 46677777753
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=94.01 E-value=4.8 Score=39.14 Aligned_cols=177 Identities=10% Similarity=0.067 Sum_probs=90.7
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~ 159 (643)
++.||+.+.. ..+.+++|++.......+.... ...-+.++.. ++.|||.... .+.++
T Consensus 88 ~g~l~v~~~~--------~~~~i~~~d~~g~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~~~-----------~~~i~ 145 (286)
T 1q7f_A 88 SGDIIVTERS--------PTHQIQIYNQYGQFVRKFGATI---LQHPRGVTVDNKGRIIVVECK-----------VMRVI 145 (286)
T ss_dssp TTEEEEEECG--------GGCEEEEECTTSCEEEEECTTT---CSCEEEEEECTTSCEEEEETT-----------TTEEE
T ss_pred CCeEEEEcCC--------CCCEEEEECCCCcEEEEecCcc---CCCceEEEEeCCCCEEEEECC-----------CCEEE
Confidence 5788887631 0246888996655444443321 1122334333 5678887542 24688
Q ss_pred EEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccc
Q 006473 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG 238 (643)
Q Consensus 160 ~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~ 238 (643)
+||+.......+...+ ....-+.+++- ++.||+.... .+.|++||+.......+... +....|
T Consensus 146 ~~~~~g~~~~~~~~~~--~~~~p~~i~~~~~g~l~v~~~~---------~~~i~~~~~~g~~~~~~~~~--g~~~~p--- 209 (286)
T 1q7f_A 146 IFDQNGNVLHKFGCSK--HLEFPNGVVVNDKQEIFISDNR---------AHCVKVFNYEGQYLRQIGGE--GITNYP--- 209 (286)
T ss_dssp EECTTSCEEEEEECTT--TCSSEEEEEECSSSEEEEEEGG---------GTEEEEEETTCCEEEEESCT--TTSCSE---
T ss_pred EEcCCCCEEEEeCCCC--ccCCcEEEEECCCCCEEEEECC---------CCEEEEEcCCCCEEEEEccC--CccCCC---
Confidence 8997665544443211 11112233333 5788886542 35789999865544444322 111111
Q ss_pred eeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEec
Q 006473 239 FQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFG 313 (643)
Q Consensus 239 ~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfG 313 (643)
.+++.. ++.|||...... ..+.+|++....-..+.... +. ..-+++++. ++++|+..
T Consensus 210 ~~i~~d~~G~l~v~~~~~~---------------~~i~~~~~~g~~~~~~~~~~--~~-~~~~~i~~~~~g~l~vs~ 268 (286)
T 1q7f_A 210 IGVGINSNGEILIADNHNN---------------FNLTIFTQDGQLISALESKV--KH-AQCFDVALMDDGSVVLAS 268 (286)
T ss_dssp EEEEECTTCCEEEEECSSS---------------CEEEEECTTSCEEEEEEESS--CC-SCEEEEEEETTTEEEEEE
T ss_pred cEEEECCCCCEEEEeCCCC---------------EEEEEECCCCCEEEEEcccC--CC-CcceeEEECCCCcEEEEC
Confidence 233333 667888765432 13778887654434443211 11 112344444 67888874
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=93.97 E-value=7.1 Score=40.91 Aligned_cols=133 Identities=8% Similarity=0.065 Sum_probs=70.2
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (643)
..+.+||+.+..-...-. .... .-.+++.. ++..++.|+.+ ..+.+||+.+.+- +.... .
T Consensus 290 ~~i~vwd~~~~~~~~~~~--~~~~-~v~~~~~~~~~~~l~sg~~d---------g~i~vwd~~~~~~--~~~~~-----~ 350 (464)
T 3v7d_B 290 NTLIVWDVAQMKCLYILS--GHTD-RIYSTIYDHERKRCISASMD---------TTIRIWDLENGEL--MYTLQ-----G 350 (464)
T ss_dssp SCEEEEETTTTEEEEEEC--CCSS-CEEEEEEETTTTEEEEEETT---------SCEEEEETTTTEE--EEEEC-----C
T ss_pred CeEEEEECCCCcEEEEec--CCCC-CEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCcE--EEEEe-----C
Confidence 358889988765433221 1111 11222222 44556666642 4588899877643 22221 1
Q ss_pred CccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEecc
Q 006473 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314 (643)
Q Consensus 235 ~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG 314 (643)
.......+.+.+..++.|+.++. +.+||+.+..-..... ........+...++.+++.|+
T Consensus 351 h~~~v~~~~~~~~~l~s~s~dg~----------------v~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~ 410 (464)
T 3v7d_B 351 HTALVGLLRLSDKFLVSAAADGS----------------IRGWDANDYSRKFSYH----HTNLSAITTFYVSDNILVSGS 410 (464)
T ss_dssp CSSCEEEEEECSSEEEEEETTSE----------------EEEEETTTCCEEEEEE----CTTCCCEEEEEECSSEEEEEE
T ss_pred CCCcEEEEEEcCCEEEEEeCCCc----------------EEEEECCCCceeeeec----CCCCccEEEEEeCCCEEEEec
Confidence 11112233345677777777654 7788887654222211 112223334445777777776
Q ss_pred ccccccCccccccccCCcEEEEECCCCc
Q 006473 315 VVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 315 ~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
. +.|.+||+.+++
T Consensus 411 -d--------------g~i~iwd~~~g~ 423 (464)
T 3v7d_B 411 -E--------------NQFNIYNLRSGK 423 (464)
T ss_dssp -T--------------TEEEEEETTTCC
T ss_pred -C--------------CeEEEEECCCCc
Confidence 2 348999998765
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=93.93 E-value=1.5 Score=44.50 Aligned_cols=98 Identities=13% Similarity=0.163 Sum_probs=47.1
Q ss_pred cEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC
Q 006473 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (643)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (643)
.+|.+|+.+++++.+.......|+ + ++.. +..||+.+....... .-.+|.++..++..+.+..... ..
T Consensus 30 ~~~~~d~~~g~~~~~~~~~~~~p~--~-l~~spdg~~l~~~~~~~~~~~------~v~~~~~~~~~g~~~~~~~~~~-~~ 99 (361)
T 3scy_A 30 YTFRFNEETGESLPLSDAEVANPS--Y-LIPSADGKFVYSVNEFSKDQA------AVSAFAFDKEKGTLHLLNTQKT-MG 99 (361)
T ss_dssp EEEEEETTTCCEEEEEEEECSCCC--S-EEECTTSSEEEEEECCSSTTC------EEEEEEEETTTTEEEEEEEEEC-SS
T ss_pred EEEEEeCCCCCEEEeecccCCCCc--e-EEECCCCCEEEEEEccCCCCC------cEEEEEEeCCCCcEEEeeEecc-CC
Confidence 466678888888766532111111 1 2222 445777665311111 1235677777777776654111 11
Q ss_pred CceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCC
Q 006473 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (643)
Q Consensus 180 Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t 218 (643)
..-+..+.-++.||+.+ .. -..+.+|++..
T Consensus 100 ~~p~~~~~dg~~l~~~~-~~--------~~~v~~~~~~~ 129 (361)
T 3scy_A 100 ADPCYLTTNGKNIVTAN-YS--------GGSITVFPIGQ 129 (361)
T ss_dssp SCEEEEEECSSEEEEEE-TT--------TTEEEEEEBCT
T ss_pred CCcEEEEECCCEEEEEE-CC--------CCEEEEEEeCC
Confidence 12222333344555543 21 24577888754
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=93.92 E-value=4.2 Score=40.08 Aligned_cols=109 Identities=11% Similarity=0.065 Sum_probs=53.9
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCc-eeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPR-SAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP 177 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pR-s~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P 177 (643)
+.|+.||+.+.+....... +... .-+.++.. +..+|+.++. -..+++||+.+.+-...-..+.+
T Consensus 11 ~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~v~~~~-----------~~~v~~~d~~~~~~~~~~~~~~~ 77 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITI--ADAGPTPMVPMVAPGGRIAYATVNK-----------SESLVKIDLVTGETLGRIDLSTP 77 (337)
T ss_dssp TEEEEEETTTTEEEEEEEC--TTCTTCCCCEEECTTSSEEEEEETT-----------TTEEEEEETTTCCEEEEEECCBT
T ss_pred CeEEEEECCCCcEEEEEEc--CCCCCCccceEEcCCCCEEEEEeCC-----------CCeEEEEECCCCCeEeeEEcCCc
Confidence 5789999988765432211 1110 11223332 3478887653 24699999988775432221111
Q ss_pred C--CCceeEEEEE--CCEEEEEeeeecCCCceee---eccEEEEEcCCCceEE
Q 006473 178 S--PRSGHRMVLY--KHKIIVFGGFYDTLREVRY---YNDLYVFDLDQFKWQE 223 (643)
Q Consensus 178 ~--~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~---~~dv~~yD~~t~~W~~ 223 (643)
. ...-+.+++. +++||+......... ..+ ...+++||+.+.+...
T Consensus 78 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~-~~~~~~~~~i~v~d~~~~~~~~ 129 (337)
T 1pby_B 78 EERVKSLFGAALSPDGKTLAIYESPVRLEL-THFEVQPTRVALYDAETLSRRK 129 (337)
T ss_dssp TEEEECTTCEEECTTSSEEEEEEEEEEECS-SCEEECCCEEEEEETTTTEEEE
T ss_pred ccccccccceEECCCCCEEEEEeccccccc-ccccccCceEEEEECCCCcEEE
Confidence 0 0011223333 346776642211000 011 3689999998876543
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=93.86 E-value=3.3 Score=40.77 Aligned_cols=86 Identities=8% Similarity=0.091 Sum_probs=43.6
Q ss_pred eEEEEeccCC-CEEEEEcceecCCCCceeeccEEEEECCCCcEEEe-cCCCCCCC-ceeeEEEEE-CCEEEEEeCccCCC
Q 006473 72 CSLNINPLKE-TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVI-SSPNSPPP-RSAHQAVSW-KNYLYIFGGEFTSP 147 (643)
Q Consensus 72 ~s~~~~~~~~-~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l-~s~~~P~p-Rs~ha~~~~-~~~iyvfGG~~~~~ 147 (643)
+++++.+ + +.||+.+.. +.+++||+. ++...+ .......+ ..-+.++.. ++.||+........
T Consensus 74 ~~i~~~~--~~g~l~v~~~~----------~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~ 140 (314)
T 1pjx_A 74 AGCQCDR--DANQLFVADMR----------LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVA 140 (314)
T ss_dssp EEEEECS--SSSEEEEEETT----------TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCT
T ss_pred ceEEEec--CCCcEEEEECC----------CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccc
Confidence 3455544 4 677776541 358899998 777765 32211111 112333333 67788865422100
Q ss_pred ----CCCcceecCeEEEEECCCCcEEEe
Q 006473 148 ----NQERFHHYKDFWMLDLKTNQWEQL 171 (643)
Q Consensus 148 ----~~~~~~~~~dv~~yD~~t~~W~~~ 171 (643)
..........+++||+. .+...+
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~-g~~~~~ 167 (314)
T 1pjx_A 141 PADYTRSMQEKFGSIYCFTTD-GQMIQV 167 (314)
T ss_dssp TSCCCBTTSSSCEEEEEECTT-SCEEEE
T ss_pred cccccccccCCCCeEEEECCC-CCEEEe
Confidence 00000112578999987 665544
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=93.85 E-value=3.8 Score=45.95 Aligned_cols=158 Identities=9% Similarity=0.061 Sum_probs=79.0
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCC-----CcEEEeccCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT-----NQWEQLNLKG 175 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t-----~~W~~~~~~g 175 (643)
..++++|+.+++-..+.... . ........-+++.+++.. -..++++|+.+ +....+...+
T Consensus 101 ~~i~~~d~~~~~~~~l~~~~--~-~~~~~~~SpdG~~la~~~------------~~~i~v~~~~~~~~~~g~~~~~~~~~ 165 (706)
T 2z3z_A 101 GGLVGFDMLARKVTYLFDTN--E-ETASLDFSPVGDRVAYVR------------NHNLYIARGGKLGEGMSRAIAVTIDG 165 (706)
T ss_dssp TEEEEEETTTTEEEEEECCT--T-CCTTCEECTTSSEEEEEE------------TTEEEEEECBCTTSCCCCCEESCSCC
T ss_pred CEEEEEECCCCceEEccCCc--c-cccCCcCCCCCCEEEEEE------------CCeEEEEecCcccccCCCcEEeccCC
Confidence 47899999998877765432 1 111111111343333331 14688999888 7766654322
Q ss_pred CCCCCce----------eEEEEE--CCEEEEEeeeecCCCc------------------------eeeeccEEEEEcCCC
Q 006473 176 CPSPRSG----------HRMVLY--KHKIIVFGGFYDTLRE------------------------VRYYNDLYVFDLDQF 219 (643)
Q Consensus 176 ~P~~Rs~----------h~~~~~--~~~lyvfGG~~~~~~~------------------------~~~~~dv~~yD~~t~ 219 (643)
......+ ...+.+ +++.++++.++..... ......|+++|+.+.
T Consensus 166 ~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~ 245 (706)
T 2z3z_A 166 TETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG 245 (706)
T ss_dssp BTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT
T ss_pred CCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC
Confidence 1100000 022333 5666666664322100 012357999999887
Q ss_pred ceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCC-eeEEec
Q 006473 220 KWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW-EWSKVK 288 (643)
Q Consensus 220 ~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~-~W~~l~ 288 (643)
.-..+.... .....-.++... ++..++++..+.. .....++++|+.+. .+..+.
T Consensus 246 ~~~~~~~~~----~~~~~~~~~~~spdg~~l~~~~~~~~-----------~~~~~v~~~d~~~g~~~~~~~ 301 (706)
T 2z3z_A 246 KTVYLQTGE----PKEKFLTNLSWSPDENILYVAEVNRA-----------QNECKVNAYDAETGRFVRTLF 301 (706)
T ss_dssp EEEECCCCS----CTTCEEEEEEECTTSSEEEEEEECTT-----------SCEEEEEEEETTTCCEEEEEE
T ss_pred ceEeeccCC----CCceeEeeEEEECCCCEEEEEEeCCC-----------CCeeEEEEEECCCCceeeEEE
Confidence 655543220 111111222222 5554444443332 23457899999887 676654
|
| >1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=93.81 E-value=1.5 Score=42.06 Aligned_cols=148 Identities=16% Similarity=0.328 Sum_probs=79.3
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEE--ecC--CCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCccee
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKV--ISS--PNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHH 154 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~--l~s--~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~ 154 (643)
++++|+|=|. .+|+++.....+.. |.. +.+| ..--++... ++.||+|-|
T Consensus 33 ~g~~y~Fkg~-----------~~wr~~~~~~~~~p~~I~~~wp~Lp--~~iDAa~~~~~~~~iyfFkG------------ 87 (207)
T 1pex_A 33 RGETMIFKDR-----------FFWRLHPQQVDAELFLTKSFWPELP--NRIDAAYEHPSHDLIFIFRG------------ 87 (207)
T ss_dssp TTEEEEEETT-----------EEEEECSSSSCCEEEEHHHHCTTSC--SSCCEEEEETTTTEEEEEET------------
T ss_pred CCcEEEEECC-----------EEEEEeCCCcCCCceehhHhccCCC--CCccEEEEeccCCcEEEEcc------------
Confidence 6889998883 57777765544332 211 2233 222333333 589999988
Q ss_pred cCeEEEEECCCCcE---EEeccCCCCCCCcee-EEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEE-----
Q 006473 155 YKDFWMLDLKTNQW---EQLNLKGCPSPRSGH-RMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE----- 223 (643)
Q Consensus 155 ~~dv~~yD~~t~~W---~~~~~~g~P~~Rs~h-~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~----- 223 (643)
+.+|+|+..+-.- ..+...|+|..-.+- +++.+ ++++|+|-| +..|+||..+.+-..
T Consensus 88 -~~~w~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG-----------~~ywr~d~~~~~~d~gyPr~ 155 (207)
T 1pex_A 88 -RKFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG-----------NQVWRYDDTNHIMDKDYPRL 155 (207)
T ss_dssp -TEEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET-----------TEEEEEETTTTEECSSCCCB
T ss_pred -CEEEEEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeC-----------CEEEEEeCcCccccCCCCcc
Confidence 4578886432211 233333444322222 33333 479999977 457999987543110
Q ss_pred eccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEE
Q 006473 224 IKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (643)
Q Consensus 224 v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (643)
+...-.+ +| .... ++...++.+|+|-|. ..|+||..+.+-..
T Consensus 156 i~~~~~G-ip-~~iD-aAf~~~g~~YfFkg~------------------~y~rf~~~~~~v~~ 197 (207)
T 1pex_A 156 IEEDFPG-IG-DKVD-AVYEKNGYIYFFNGP------------------IQFEYSIWSNRIVR 197 (207)
T ss_dssp HHHHSTT-SC-SCCS-EEEEETTEEEEEETT------------------EEEEEETTTTEEEE
T ss_pred HHHcCCC-CC-CCcc-EEEEcCCcEEEEECC------------------EEEEEeCCccEEec
Confidence 1000001 12 1222 333458999999764 37889887665443
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=93.80 E-value=1.8 Score=42.63 Aligned_cols=202 Identities=11% Similarity=0.041 Sum_probs=97.1
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCC--CCCceeeEEEEECCEEEEE----eCccC
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNS--PPPRSAHQAVSWKNYLYIF----GGEFT 145 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~--P~pRs~ha~~~~~~~iyvf----GG~~~ 145 (643)
.++++.+ ++.||+... + .+.|++||+.+++...+..... +..+....++.-++.||+. |....
T Consensus 72 ~~l~~~~--dg~l~v~~~----~-----~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~ 140 (296)
T 3e5z_A 72 NGHCLNK--QGHLIACSH----G-----LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKP 140 (296)
T ss_dssp EEEEECT--TCCEEEEET----T-----TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCG
T ss_pred ceeeECC--CCcEEEEec----C-----CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccc
Confidence 3455554 566766543 1 1468999998888876643210 1111112222226788886 33110
Q ss_pred CC--CCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcC-CCce
Q 006473 146 SP--NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLD-QFKW 221 (643)
Q Consensus 146 ~~--~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~-t~~W 221 (643)
.. ..........+|+|++. ++...+... ...-.+++.. ++++++.... .+.+++|++. +.+.
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~----~~~~~gi~~s~dg~~lv~~~~---------~~~i~~~~~~~~g~~ 206 (296)
T 3e5z_A 141 EEGYGGEMELPGRWVFRLAPD-GTLSAPIRD----RVKPNGLAFLPSGNLLVSDTG---------DNATHRYCLNARGET 206 (296)
T ss_dssp GGSSCCCCCSSSCEEEEECTT-SCEEEEECC----CSSEEEEEECTTSCEEEEETT---------TTEEEEEEECSSSCE
T ss_pred cccccccccCCCcEEEEECCC-CCEEEeecC----CCCCccEEECCCCCEEEEeCC---------CCeEEEEEECCCCcC
Confidence 00 00000012479999987 555554321 1111233332 4555543321 3578899886 4554
Q ss_pred -EEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCcee
Q 006473 222 -QEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299 (643)
Q Consensus 222 -~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g 299 (643)
....... .....|+ +++.. ++.|||.. .. .+++|++.......+... .. -
T Consensus 207 ~~~~~~~~-~~~~~p~---~i~~d~~G~l~v~~--~~----------------~v~~~~~~g~~~~~~~~~----~~--~ 258 (296)
T 3e5z_A 207 EYQGVHFT-VEPGKTD---GLRVDAGGLIWASA--GD----------------GVHVLTPDGDELGRVLTP----QT--T 258 (296)
T ss_dssp EEEEEEEC-CSSSCCC---SEEEBTTSCEEEEE--TT----------------EEEEECTTSCEEEEEECS----SC--C
T ss_pred cCCCeEee-CCCCCCC---eEEECCCCCEEEEc--CC----------------eEEEECCCCCEEEEEECC----CC--c
Confidence 2111110 0001111 23333 67788776 22 378999886555555432 11 1
Q ss_pred eEEEEE--C-CeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 300 FSMCVH--K-KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 300 ~s~~~~--~-~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
.++++- + +.||+... +.||+|++.+.+
T Consensus 259 ~~~~f~~~d~~~L~v~t~----------------~~l~~~~~~~~~ 288 (296)
T 3e5z_A 259 SNLCFGGPEGRTLYMTVS----------------TEFWSIETNVRG 288 (296)
T ss_dssp CEEEEESTTSCEEEEEET----------------TEEEEEECSCCB
T ss_pred eeEEEECCCCCEEEEEcC----------------CeEEEEEccccc
Confidence 223332 2 34555432 348999988764
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=93.76 E-value=3.3 Score=47.27 Aligned_cols=143 Identities=12% Similarity=0.125 Sum_probs=78.2
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEE
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLY 212 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~ 212 (643)
++.|||+||.. +-+++||+.++++..+...+.+....-.+++.- ++.||+ |. ..-|.
T Consensus 482 ~g~lWi~~~t~-----------~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWi-gt----------~~Gl~ 539 (758)
T 3ott_A 482 EGNVWVLLYNN-----------KGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWV-GF----------HGGVM 539 (758)
T ss_dssp TSCEEEEETTC-----------SSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEE-EE----------TTEEE
T ss_pred CCCEEEEccCC-----------CCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEE-Ee----------cCceE
Confidence 57899877642 458899999999988754222211111222222 567885 33 13488
Q ss_pred EEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCC
Q 006473 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGM 292 (643)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~ 292 (643)
+||+.+.++...... ..|. ..-++++..++.|+|... .. +.+||+.+.+.....
T Consensus 540 ~~~~~~~~~~~~~~~---gl~~-~~i~~i~~~~g~lWi~t~--~G----------------l~~~~~~~~~~~~~~---- 593 (758)
T 3ott_A 540 RINPKDESQQSISFG---SFSN-NEILSMTCVKNSIWVSTT--NG----------------LWIIDRKTMDARQQN---- 593 (758)
T ss_dssp EECC--CCCCBCCCC---C----CCEEEEEEETTEEEEEES--SC----------------EEEEETTTCCEEEC-----
T ss_pred EEecCCCceEEeccc---CCCc-cceEEEEECCCCEEEECC--CC----------------eEEEcCCCceeEEec----
Confidence 999988877655321 1122 223334444788887652 22 789999988766542
Q ss_pred CCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCC
Q 006473 293 PPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (643)
Q Consensus 293 ~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (643)
.|...+. .++.. .+--+.|||..+ +..|+|..
T Consensus 594 ~~~~~~~-~~~~~~~~G~l~fG~~~G---------------l~~f~p~~ 626 (758)
T 3ott_A 594 MTNKRFT-SLLFDPKEDCVYLGGADG---------------FGISHSNL 626 (758)
T ss_dssp -CCCCCS-EEEEETTTTEEEEECBSE---------------EEEEEC--
T ss_pred CCCCcee-eeEEECCCCcEEEecCCc---------------eEEEChhh
Confidence 1333333 23333 344566777654 77888764
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=93.65 E-value=5.4 Score=40.57 Aligned_cols=219 Identities=13% Similarity=0.092 Sum_probs=105.9
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECC-EEEEEeCccCCCCCCcceecCeEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKN-YLYIFGGEFTSPNQERFHHYKDFW 159 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~-~iyvfGG~~~~~~~~~~~~~~dv~ 159 (643)
+++.++|... .++ ...+|.+|+.+.+.+.+.... .......+..-++ .|+..... ..++
T Consensus 46 Dg~~l~~~~~-~~g-----~~~l~~~d~~~g~~~~lt~~~--~~~~~~~~~spdg~~l~~~~~~------------~~l~ 105 (388)
T 3pe7_A 46 DGSKLLFGGA-FDG-----PWNYYLLDLNTQVATQLTEGR--GDNTFGGFLSPDDDALFYVKDG------------RNLM 105 (388)
T ss_dssp TSCEEEEEEC-TTS-----SCEEEEEETTTCEEEECCCSS--CBCSSSCEECTTSSEEEEEETT------------TEEE
T ss_pred CCCEEEEEEc-CCC-----CceEEEEeCCCCceEEeeeCC--CCCccceEEcCCCCEEEEEeCC------------CeEE
Confidence 5666666652 122 137999999999988886532 1111111112234 45444321 4789
Q ss_pred EEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCC-------------CceeeeccEEEEEcCCCceEEe
Q 006473 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTL-------------REVRYYNDLYVFDLDQFKWQEI 224 (643)
Q Consensus 160 ~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~-------------~~~~~~~dv~~yD~~t~~W~~v 224 (643)
++|+.+.+-..+.. .|..........+ ++.+++.--..... ........|+++|+.+.+-..+
T Consensus 106 ~~d~~~g~~~~~~~--~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 183 (388)
T 3pe7_A 106 RVDLATLEENVVYQ--VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVI 183 (388)
T ss_dssp EEETTTCCEEEEEE--CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEE
T ss_pred EEECCCCcceeeee--chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEe
Confidence 99999988666544 3333222222222 33333211100000 0011236899999998876666
Q ss_pred ccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEE
Q 006473 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV 304 (643)
Q Consensus 225 ~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~ 304 (643)
... +.......+...++..+++...... ......+|.+|+.+.....+... +........+.
T Consensus 184 ~~~-----~~~~~~~~~sp~dg~~l~~~~~~~~----------~~~~~~l~~~d~~~~~~~~l~~~---~~~~~~~~~~~ 245 (388)
T 3pe7_A 184 LQE-----NQWLGHPIYRPYDDSTVAFCHEGPH----------DLVDARMWLINEDGTNMRKVKTH---AEGESCTHEFW 245 (388)
T ss_dssp EEE-----SSCEEEEEEETTEEEEEEEEECSCT----------TTSSCSEEEEETTSCCCEESCCC---CTTEEEEEEEE
T ss_pred ecC-----CccccccEECCCCCCEEEEEEecCC----------CCCcceEEEEeCCCCceEEeeeC---CCCcccccceE
Confidence 543 1111222222203443333322111 01235699999887766665431 11111112222
Q ss_pred E-CCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 305 H-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 305 ~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
. +++.++|..... ......|++||+.+.+-..+..
T Consensus 246 spdg~~l~~~~~~~---------~~~~~~l~~~d~~~g~~~~l~~ 281 (388)
T 3pe7_A 246 VPDGSALVYVSYLK---------GSPDRFIYSADPETLENRQLTS 281 (388)
T ss_dssp CTTSSCEEEEEEET---------TCCCEEEEEECTTTCCEEEEEE
T ss_pred CCCCCEEEEEecCC---------CCCcceEEEEecCCCceEEEEc
Confidence 2 555444433221 0111249999999988766644
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=93.64 E-value=8.7 Score=43.32 Aligned_cols=151 Identities=12% Similarity=0.013 Sum_probs=81.1
Q ss_pred cCeEEEEECCC------C--cEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCC---ceEE
Q 006473 155 YKDFWMLDLKT------N--QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF---KWQE 223 (643)
Q Consensus 155 ~~dv~~yD~~t------~--~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~---~W~~ 223 (643)
.+.+|++|+.+ . .+..+... .... .......++.||+.+.... ....|+++|+.+. .|+.
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~--~~~~-~~~~s~dg~~l~~~s~~~~------~~~~l~~~d~~~~~~~~~~~ 328 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDN--FEGE-YDYVTNEGTVFTFKTNRHS------PNYRLINIDFTDPEESKWKV 328 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECS--SSSC-EEEEEEETTEEEEEECTTC------TTCEEEEEETTSCCGGGCEE
T ss_pred ccEEEEEECcccccccCCccceEEeeCC--CCcE-EEEEeccCCEEEEEECCCC------CCCEEEEEeCCCCCccccee
Confidence 36899999876 4 57777541 1111 1122234678888765321 1357999998875 4888
Q ss_pred eccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCe-eEEeccCCCCCCCceeeE
Q 006473 224 IKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE-WSKVKKIGMPPGPRAGFS 301 (643)
Q Consensus 224 v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~-W~~l~~~g~~P~~R~g~s 301 (643)
+.+.. ....-..+... ++.|++.....+ ...++++++.+.. ...+.. | ...-.+
T Consensus 329 l~~~~-----~~~~~~~~~~~~~~~lv~~~~~~g--------------~~~l~~~~~~~g~~~~~l~~----~-~~~v~~ 384 (710)
T 2xdw_A 329 LVPEH-----EKDVLEWVACVRSNFLVLCYLHDV--------------KNTLQLHDLATGALLKIFPL----E-VGSVVG 384 (710)
T ss_dssp EECCC-----SSCEEEEEEEETTTEEEEEEEETT--------------EEEEEEEETTTCCEEEEECC----C-SSEEEE
T ss_pred ccCCC-----CCCeEEEEEEEcCCEEEEEEEECC--------------EEEEEEEECCCCCEEEecCC----C-CceEEE
Confidence 76541 11122233444 677777665432 3458899985543 444432 2 111112
Q ss_pred EEEE-CCeEEEeccccccccCccccccccCCcEEEEECCCCc--EEEeEe
Q 006473 302 MCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR--WYPLEL 348 (643)
Q Consensus 302 ~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~--W~~l~~ 348 (643)
++.- ++..++|...+. .....+|.||+.+++ +..+..
T Consensus 385 ~~~s~d~~~l~~~~ss~----------~~P~~i~~~d~~tg~~~~~~l~~ 424 (710)
T 2xdw_A 385 YSGQKKDTEIFYQFTSF----------LSPGIIYHCDLTKEELEPRVFRE 424 (710)
T ss_dssp EECCTTCSEEEEEEECS----------SCCCEEEEEETTSSSCCCEEEEE
T ss_pred EecCCCCCEEEEEEeCC----------CCCCEEEEEECCCCccceEEeee
Confidence 2221 333333332211 124579999999877 666554
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=93.59 E-value=4.2 Score=42.59 Aligned_cols=172 Identities=13% Similarity=0.128 Sum_probs=87.5
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEe-ccCCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSP 179 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~-~~~g~P~~ 179 (643)
+.+.+||+.+++....-.. ......++.+.+.+++.|+.. ..+.+||+.+..-... .. ....
T Consensus 193 g~i~vwd~~~~~~~~~~~~----h~~~v~~l~~~~~~l~s~s~d-----------g~i~vwd~~~~~~~~~~~~--~~~~ 255 (435)
T 1p22_A 193 STVRVWDVNTGEMLNTLIH----HCEAVLHLRFNNGMMVTCSKD-----------RSIAVWDMASPTDITLRRV--LVGH 255 (435)
T ss_dssp SCEEEEESSSCCEEEEECC----CCSCEEEEECCTTEEEEEETT-----------SCEEEEECSSSSCCEEEEE--ECCC
T ss_pred CeEEEEECCCCcEEEEEcC----CCCcEEEEEEcCCEEEEeeCC-----------CcEEEEeCCCCCCceeeeE--ecCC
Confidence 3678888887765433221 111223333455566676642 3577888876542211 11 0111
Q ss_pred CceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCC
Q 006473 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVS 259 (643)
Q Consensus 180 Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~ 259 (643)
.....++.+++..++.|+.+ ..+.+||+.+..-...-.. .......+..++.+++.|+.++.
T Consensus 256 ~~~v~~~~~~~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~l~~g~~dg~-- 317 (435)
T 1p22_A 256 RAAVNVVDFDDKYIVSASGD---------RTIKVWNTSTCEFVRTLNG-------HKRGIACLQYRDRLVVSGSSDNT-- 317 (435)
T ss_dssp SSCEEEEEEETTEEEEEETT---------SEEEEEETTTCCEEEEEEC-------CSSCEEEEEEETTEEEEEETTSC--
T ss_pred CCcEEEEEeCCCEEEEEeCC---------CeEEEEECCcCcEEEEEcC-------CCCcEEEEEeCCCEEEEEeCCCe--
Confidence 11222333455556666642 4578899887643222111 11112233335667778877665
Q ss_pred CccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECC
Q 006473 260 TDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD 339 (643)
Q Consensus 260 ~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~ 339 (643)
+.+||+.+..-...-. + ......++..++..++.|+.. +.|.+||+.
T Consensus 318 --------------i~iwd~~~~~~~~~~~-~----h~~~v~~~~~~~~~l~sg~~d--------------g~i~vwd~~ 364 (435)
T 1p22_A 318 --------------IRLWDIECGACLRVLE-G----HEELVRCIRFDNKRIVSGAYD--------------GKIKVWDLV 364 (435)
T ss_dssp --------------EEEEETTTCCEEEEEC-C----CSSCEEEEECCSSEEEEEETT--------------SCEEEEEHH
T ss_pred --------------EEEEECCCCCEEEEEe-C----CcCcEEEEEecCCEEEEEeCC--------------CcEEEEECC
Confidence 7888887654332211 1 111123333477778888753 348888864
Q ss_pred C
Q 006473 340 N 340 (643)
Q Consensus 340 t 340 (643)
+
T Consensus 365 ~ 365 (435)
T 1p22_A 365 A 365 (435)
T ss_dssp H
T ss_pred C
Confidence 3
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=93.53 E-value=2.7 Score=48.10 Aligned_cols=110 Identities=11% Similarity=0.071 Sum_probs=65.4
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~ 159 (643)
++.|+|+||. .+-|++||+.++++..+.....+....-.+++.. ++.||+-.. .-+.
T Consensus 482 ~g~lWi~~~t---------~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt~-------------~Gl~ 539 (758)
T 3ott_A 482 EGNVWVLLYN---------NKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGFH-------------GGVM 539 (758)
T ss_dssp TSCEEEEETT---------CSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEET-------------TEEE
T ss_pred CCCEEEEccC---------CCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEec-------------CceE
Confidence 6788887662 1358999999999998753221111122233322 577886431 3588
Q ss_pred EEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEe
Q 006473 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (643)
Q Consensus 160 ~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (643)
+||+.+..+..+...++|.. .-++++.-++.||+-. .+.+.+||+.+.+....
T Consensus 540 ~~~~~~~~~~~~~~~gl~~~-~i~~i~~~~g~lWi~t-----------~~Gl~~~~~~~~~~~~~ 592 (758)
T 3ott_A 540 RINPKDESQQSISFGSFSNN-EILSMTCVKNSIWVST-----------TNGLWIIDRKTMDARQQ 592 (758)
T ss_dssp EECC--CCCCBCCCCC---C-CEEEEEEETTEEEEEE-----------SSCEEEEETTTCCEEEC
T ss_pred EEecCCCceEEecccCCCcc-ceEEEEECCCCEEEEC-----------CCCeEEEcCCCceeEEe
Confidence 99999888776643344432 2334444578888743 24589999998877654
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=93.51 E-value=7.9 Score=43.66 Aligned_cols=218 Identities=12% Similarity=0.007 Sum_probs=109.0
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCC-----CCcce
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPN-----QERFH 153 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~-----~~~~~ 153 (643)
+++.++|+.. ..|.. ...|+++|+.+++...+.... .....+.+ +++.++++....... .....
T Consensus 135 Dg~~la~~~~-~~G~~---~~~i~v~d~~tg~~~~~~~~~-----~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~ 205 (710)
T 2xdw_A 135 DGEYFAYGLS-ASGSD---WVTIKFMKVDGAKELPDVLER-----VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN 205 (710)
T ss_dssp TSSEEEEEEE-ETTCS---CEEEEEEETTTTEEEEEEEEE-----ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred CCCEEEEEEc-CCCCc---eEEEEEEECCCCCCCcccccC-----cccceEEEEeCCCEEEEEEECCccccccccccccC
Confidence 5566665542 12221 137999999999887653211 11122233 444333433222100 00011
Q ss_pred ecCeEEEEECCCCcEE--EeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCC------C--ceE
Q 006473 154 HYKDFWMLDLKTNQWE--QLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ------F--KWQ 222 (643)
Q Consensus 154 ~~~dv~~yD~~t~~W~--~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t------~--~W~ 222 (643)
....+|++++.+.... .+.. ....+........- +++.++++...... ..+.+|++|+.+ . .+.
T Consensus 206 ~~~~v~~~~l~t~~~~~~~v~~-~~~~~~~~~~~~~SpDg~~l~~~~~~~~~----~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 206 LHQKLYYHVLGTDQSEDILCAE-FPDEPKWMGGAELSDDGRYVLLSIREGCD----PVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCEEEEEETTSCGGGCEEEEC-CTTCTTCEEEEEECTTSCEEEEEEECSSS----SCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred CCCEEEEEECCCCcccceEEec-cCCCCeEEEEEEEcCCCCEEEEEEEccCC----CccEEEEEECcccccccCCccceE
Confidence 2456999999887642 2211 11112222222222 44444444332211 146899999876 4 577
Q ss_pred EeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCC---eeEEeccCCCCCCC-ce
Q 006473 223 EIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW---EWSKVKKIGMPPGP-RA 298 (643)
Q Consensus 223 ~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~---~W~~l~~~g~~P~~-R~ 298 (643)
.+.... ... ...+...++.||+.+..... ...++++|+.+. .|..+... .. ..
T Consensus 281 ~l~~~~-----~~~-~~~~s~dg~~l~~~s~~~~~-------------~~~l~~~d~~~~~~~~~~~l~~~----~~~~~ 337 (710)
T 2xdw_A 281 KLIDNF-----EGE-YDYVTNEGTVFTFKTNRHSP-------------NYRLINIDFTDPEESKWKVLVPE----HEKDV 337 (710)
T ss_dssp EEECSS-----SSC-EEEEEEETTEEEEEECTTCT-------------TCEEEEEETTSCCGGGCEEEECC----CSSCE
T ss_pred EeeCCC-----CcE-EEEEeccCCEEEEEECCCCC-------------CCEEEEEeCCCCCcccceeccCC----CCCCe
Confidence 776541 111 12233447888888754321 245889998765 58887542 22 12
Q ss_pred eeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCCCc-EEEeE
Q 006473 299 GFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR-WYPLE 347 (643)
Q Consensus 299 g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~-W~~l~ 347 (643)
-.+++.. ++++++...... ...|+++++.+++ ...+.
T Consensus 338 ~~~~~~~~~~~lv~~~~~~g------------~~~l~~~~~~~g~~~~~l~ 376 (710)
T 2xdw_A 338 LEWVACVRSNFLVLCYLHDV------------KNTLQLHDLATGALLKIFP 376 (710)
T ss_dssp EEEEEEETTTEEEEEEEETT------------EEEEEEEETTTCCEEEEEC
T ss_pred EEEEEEEcCCEEEEEEEECC------------EEEEEEEECCCCCEEEecC
Confidence 2344555 667766654432 3457888875543 34443
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.48 E-value=3.5 Score=41.12 Aligned_cols=27 Identities=15% Similarity=0.107 Sum_probs=17.6
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEe
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVI 116 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l 116 (643)
++.+++.|+. -+.+.+||+.+.+....
T Consensus 85 ~~~~l~s~~~---------dg~i~iwd~~~~~~~~~ 111 (369)
T 3zwl_B 85 FTKYCVTGSA---------DYSIKLWDVSNGQCVAT 111 (369)
T ss_dssp TSSEEEEEET---------TTEEEEEETTTCCEEEE
T ss_pred CCCEEEEEeC---------CCeEEEEECCCCcEEEE
Confidence 4566666662 24688899888765543
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=93.39 E-value=0.5 Score=48.71 Aligned_cols=106 Identities=17% Similarity=0.087 Sum_probs=54.4
Q ss_pred CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCC
Q 006473 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSE 266 (643)
Q Consensus 189 ~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~ 266 (643)
++.+++.|+.+ ..|.+||+.+.+-...-.. ....-.+++.. ++.+++.||.++.
T Consensus 150 dg~~l~sgs~d---------g~v~iwd~~~~~~~~~~~~------h~~~v~~v~~s~~~~~~~~s~~~dg~--------- 205 (357)
T 4g56_B 150 DGTQAVSGGKD---------FSVKVWDLSQKAVLKSYNA------HSSEVNCVAACPGKDTIFLSCGEDGR--------- 205 (357)
T ss_dssp SSSEEEEEETT---------SCEEEEETTTTEEEEEECC------CSSCEEEEEECTTCSSCEEEEETTSC---------
T ss_pred CCCEEEEEeCC---------CeEEEEECCCCcEEEEEcC------CCCCEEEEEEccCCCceeeeeccCCc---------
Confidence 55666777643 3578889887653322111 01111122222 4457777877655
Q ss_pred CCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE--CCeEEEeccccccccCccccccccCCcEEEEECCCC
Q 006473 267 KGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (643)
Q Consensus 267 ~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (643)
+.+||+.+.+-...... ........++++. ++.+++.|+.. ..|.+||+.+.
T Consensus 206 -------v~~wd~~~~~~~~~~~~--~~~~~~v~~v~~sp~~~~~la~g~~d--------------~~i~~wd~~~~ 259 (357)
T 4g56_B 206 -------ILLWDTRKPKPATRIDF--CASDTIPTSVTWHPEKDDTFACGDET--------------GNVSLVNIKNP 259 (357)
T ss_dssp -------EEECCTTSSSCBCBCCC--TTCCSCEEEEEECTTSTTEEEEEESS--------------SCEEEEESSCG
T ss_pred -------eEEEECCCCceeeeeee--ccccccccchhhhhcccceEEEeecc--------------cceeEEECCCC
Confidence 66778766542222111 0111122233443 45677777653 34888888764
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=93.36 E-value=3 Score=41.32 Aligned_cols=93 Identities=12% Similarity=0.019 Sum_probs=49.5
Q ss_pred ccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEe
Q 006473 209 NDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (643)
Q Consensus 209 ~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l 287 (643)
..+.+||+.+......-.. ....-.+++.. ++.+++.|+.++. +.+||+.+..-...
T Consensus 195 ~~i~i~d~~~~~~~~~~~~------h~~~v~~~~~s~~~~~l~s~s~Dg~----------------i~iwd~~~~~~~~~ 252 (340)
T 4aow_A 195 KLVKVWNLANCKLKTNHIG------HTGYLNTVTVSPDGSLCASGGKDGQ----------------AMLWDLNEGKHLYT 252 (340)
T ss_dssp SCEEEEETTTTEEEEEECC------CSSCEEEEEECTTSSEEEEEETTCE----------------EEEEETTTTEEEEE
T ss_pred CEEEEEECCCCceeeEecC------CCCcEEEEEECCCCCEEEEEeCCCe----------------EEEEEeccCceeee
Confidence 3577888877654332211 11111222333 6677888887654 67788776543332
Q ss_pred ccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 288 KKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 288 ~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
... ...-.+++...+..++.|+.. +.|.+||+.+..
T Consensus 253 ~~~-----~~~v~~~~~~~~~~~~~~~~d--------------~~i~iwd~~~~~ 288 (340)
T 4aow_A 253 LDG-----GDIINALCFSPNRYWLCAATG--------------PSIKIWDLEGKI 288 (340)
T ss_dssp EEC-----SSCEEEEEECSSSSEEEEEET--------------TEEEEEETTTTE
T ss_pred ecC-----CceEEeeecCCCCceeeccCC--------------CEEEEEECCCCe
Confidence 211 112234444455556666642 348899987754
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=93.36 E-value=6.3 Score=40.67 Aligned_cols=148 Identities=11% Similarity=0.063 Sum_probs=74.3
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEE
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLY 212 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~ 212 (643)
++.+++.|+.. ..+.+||+.+.+-...-. + . ...-.+++.. ++..++.|+.+ ..+.
T Consensus 134 dg~~l~s~~~d-----------~~i~iwd~~~~~~~~~~~-~-h-~~~v~~~~~~p~~~~l~s~s~d---------~~v~ 190 (393)
T 1erj_A 134 DGKFLATGAED-----------RLIRIWDIENRKIVMILQ-G-H-EQDIYSLDYFPSGDKLVSGSGD---------RTVR 190 (393)
T ss_dssp TSSEEEEEETT-----------SCEEEEETTTTEEEEEEC-C-C-SSCEEEEEECTTSSEEEEEETT---------SEEE
T ss_pred CCCEEEEEcCC-----------CeEEEEECCCCcEEEEEc-c-C-CCCEEEEEEcCCCCEEEEecCC---------CcEE
Confidence 56677777643 357888998876543321 1 1 1111222222 44555566642 4578
Q ss_pred EEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccC
Q 006473 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI 290 (643)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~ 290 (643)
+||+.+......... ... -.+++.. ++.+++.|+.++. +.+||+.+..-...-..
T Consensus 191 iwd~~~~~~~~~~~~-----~~~--v~~~~~~~~~~~~l~~~s~d~~----------------v~iwd~~~~~~~~~~~~ 247 (393)
T 1erj_A 191 IWDLRTGQCSLTLSI-----EDG--VTTVAVSPGDGKYIAAGSLDRA----------------VRVWDSETGFLVERLDS 247 (393)
T ss_dssp EEETTTTEEEEEEEC-----SSC--EEEEEECSTTCCEEEEEETTSC----------------EEEEETTTCCEEEEEC-
T ss_pred EEECCCCeeEEEEEc-----CCC--cEEEEEECCCCCEEEEEcCCCc----------------EEEEECCCCcEEEeecc
Confidence 889887764333222 111 1122222 6678888887765 77888776643322110
Q ss_pred CC-C--CCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCCC
Q 006473 291 GM-P--PGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (643)
Q Consensus 291 g~-~--P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (643)
.. . .....-.++++. +++.++.|+.. ..|.+||+.+.
T Consensus 248 ~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d--------------~~v~~wd~~~~ 288 (393)
T 1erj_A 248 ENESGTGHKDSVYSVVFTRDGQSVVSGSLD--------------RSVKLWNLQNA 288 (393)
T ss_dssp -----CCCSSCEEEEEECTTSSEEEEEETT--------------SEEEEEEC---
T ss_pred cccCCCCCCCCEEEEEECCCCCEEEEEeCC--------------CEEEEEECCCC
Confidence 00 0 001112233333 56777777653 34888887653
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=93.35 E-value=3.9 Score=40.64 Aligned_cols=128 Identities=9% Similarity=-0.098 Sum_probs=64.7
Q ss_pred CceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCC
Q 006473 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPN 148 (643)
Q Consensus 70 ~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~ 148 (643)
.....+..+. ++.||+.+-. .+.+++|++ +...+.+..+ ... .+.++.. ++.||+....
T Consensus 46 ~~egp~~~~~-g~~l~~~d~~---------~~~i~~~~~-~g~~~~~~~~---~~~-~~gl~~d~dG~l~v~~~~----- 105 (305)
T 3dr2_A 46 WSEGPAWWEA-QRTLVWSDLV---------GRRVLGWRE-DGTVDVLLDA---TAF-TNGNAVDAQQRLVHCEHG----- 105 (305)
T ss_dssp SEEEEEEEGG-GTEEEEEETT---------TTEEEEEET-TSCEEEEEES---CSC-EEEEEECTTSCEEEEETT-----
T ss_pred CccCCeEeCC-CCEEEEEECC---------CCEEEEEeC-CCCEEEEeCC---CCc-cceeeECCCCCEEEEECC-----
Confidence 3445555552 3457776541 246889998 4555544321 111 2233332 5778876421
Q ss_pred CCcceecCeEEEEECCCCcEEEeccCC--CCCCCceeEEEEE-CCEEEEE----eeeec---C-CCceeeeccEEEEEcC
Q 006473 149 QERFHHYKDFWMLDLKTNQWEQLNLKG--CPSPRSGHRMVLY-KHKIIVF----GGFYD---T-LREVRYYNDLYVFDLD 217 (643)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~g--~P~~Rs~h~~~~~-~~~lyvf----GG~~~---~-~~~~~~~~dv~~yD~~ 217 (643)
...+++|++. .+.+.+.... .+..+ -+.+++. ++.||+. |-... . .....-...|++||+.
T Consensus 106 ------~~~v~~~~~~-g~~~~~~~~~~~~~~~~-~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~ 177 (305)
T 3dr2_A 106 ------RRAITRSDAD-GQAHLLVGRYAGKRLNS-PNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD 177 (305)
T ss_dssp ------TTEEEEECTT-SCEEEEECEETTEECSC-CCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred ------CCEEEEECCC-CCEEEEEeccCCCccCC-CCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence 1468888886 6666553211 01111 1223333 6778874 32210 0 0000013579999998
Q ss_pred CCceEEec
Q 006473 218 QFKWQEIK 225 (643)
Q Consensus 218 t~~W~~v~ 225 (643)
+.++..+.
T Consensus 178 ~g~~~~~~ 185 (305)
T 3dr2_A 178 GSPLQRMA 185 (305)
T ss_dssp SCCCEEEE
T ss_pred CCcEEEEe
Confidence 88877764
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=93.31 E-value=1.6 Score=49.45 Aligned_cols=128 Identities=16% Similarity=0.226 Sum_probs=69.1
Q ss_pred CCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCC----------------c----ee
Q 006473 68 PRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPP----------------R----SA 127 (643)
Q Consensus 68 ~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~p----------------R----s~ 127 (643)
++.-.++...| +++.+++++.. ++.. ....++++|+.+++...+.......| | ..
T Consensus 36 ~~~~~~~~~Sp--dG~~la~~~~~-d~~~--~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (741)
T 2ecf_A 36 GPTLMKPKVAP--DGSRVTFLRGK-DSDR--NQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTG 110 (741)
T ss_dssp CCCCEEEEECT--TSSEEEEEECC-SSCT--TEEEEEEEETTTCCEEEEECGGGTC--------------------CCEE
T ss_pred CCCCCCceEec--CCCEEEEEecc-CCCC--cccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccC
Confidence 33444556666 67777776631 2211 13489999999998887754321110 0 11
Q ss_pred eEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCC---cEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeec
Q 006473 128 HQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN---QWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYD 200 (643)
Q Consensus 128 ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~---~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~ 200 (643)
...+.+ +++.++++.. ..+|++|+.++ .-..+.. ... ....+.+ +++.++++.
T Consensus 111 v~~~~~SpDg~~l~~~~~------------~~i~~~d~~~~~~~~~~~l~~---~~~--~~~~~~~SPDG~~la~~~--- 170 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLG------------GELYLYDLKQEGKAAVRQLTH---GEG--FATDAKLSPKGGFVSFIR--- 170 (741)
T ss_dssp SCCCEECTTSSEEEEEET------------TEEEEEESSSCSTTSCCBCCC---SSS--CEEEEEECTTSSEEEEEE---
T ss_pred cceeEECCCCCEEEEEeC------------CcEEEEECCCCCcceEEEccc---CCc--ccccccCCCCCCEEEEEe---
Confidence 122223 4554555432 57999999887 5443322 111 1222333 555555553
Q ss_pred CCCceeeeccEEEEEcCCCceEEeccC
Q 006473 201 TLREVRYYNDLYVFDLDQFKWQEIKPR 227 (643)
Q Consensus 201 ~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (643)
.+.|+++|+.+.....+...
T Consensus 171 -------~~~i~~~d~~~g~~~~~~~~ 190 (741)
T 2ecf_A 171 -------GRNLWVIDLASGRQMQLTAD 190 (741)
T ss_dssp -------TTEEEEEETTTTEEEECCCC
T ss_pred -------CCcEEEEecCCCCEEEeccC
Confidence 13699999998877666543
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=93.30 E-value=1.5 Score=43.55 Aligned_cols=136 Identities=11% Similarity=0.005 Sum_probs=63.9
Q ss_pred eEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCC
Q 006473 157 DFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSP 235 (643)
Q Consensus 157 dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~ 235 (643)
.+.+||+.+........ .... .-.++++. ++.+++.|+.+ ..+.+||+.+..- +.... ..
T Consensus 196 ~i~i~d~~~~~~~~~~~--~h~~-~v~~~~~s~~~~~l~s~s~D---------g~i~iwd~~~~~~--~~~~~-----~~ 256 (340)
T 4aow_A 196 LVKVWNLANCKLKTNHI--GHTG-YLNTVTVSPDGSLCASGGKD---------GQAMLWDLNEGKH--LYTLD-----GG 256 (340)
T ss_dssp CEEEEETTTTEEEEEEC--CCSS-CEEEEEECTTSSEEEEEETT---------CEEEEEETTTTEE--EEEEE-----CS
T ss_pred EEEEEECCCCceeeEec--CCCC-cEEEEEECCCCCEEEEEeCC---------CeEEEEEeccCce--eeeec-----CC
Confidence 47788988776543321 1111 11122222 55677777643 3577888876542 22221 11
Q ss_pred ccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCC-----CCceeeEEEEE-CCeE
Q 006473 236 RSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPP-----GPRAGFSMCVH-KKRA 309 (643)
Q Consensus 236 R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P-----~~R~g~s~~~~-~~~i 309 (643)
..-.+++...+..++.|+.++. +.+||+.+..-.......... ....-.++++. +++.
T Consensus 257 ~~v~~~~~~~~~~~~~~~~d~~----------------i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 320 (340)
T 4aow_A 257 DIINALCFSPNRYWLCAATGPS----------------IKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT 320 (340)
T ss_dssp SCEEEEEECSSSSEEEEEETTE----------------EEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSE
T ss_pred ceEEeeecCCCCceeeccCCCE----------------EEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCE
Confidence 1112233334445556665433 667777665432221110000 01111233333 5677
Q ss_pred EEeccccccccCccccccccCCcEEEEECCCC
Q 006473 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (643)
Q Consensus 310 yvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (643)
++.||.+ ..|.+||+.++
T Consensus 321 l~sgs~D--------------g~v~iW~~~tG 338 (340)
T 4aow_A 321 LFAGYTD--------------NLVRVWQVTIG 338 (340)
T ss_dssp EEEEETT--------------SCEEEEEEEC-
T ss_pred EEEEeCC--------------CEEEEEeCCCc
Confidence 7777754 34888888765
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.25 E-value=3.7 Score=41.86 Aligned_cols=162 Identities=15% Similarity=0.058 Sum_probs=79.3
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE----CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW----KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC 176 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~----~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~ 176 (643)
..+..||+.+.+....-... .. ...++.+ ++.+++.|+.. ..+.+||+.+.+....-. .
T Consensus 176 ~~v~lwd~~~~~~~~~~~~h--~~--~v~~~~~~~~~~g~~l~sgs~D-----------g~v~~wd~~~~~~~~~~~--~ 238 (354)
T 2pbi_B 176 GTCALWDVESGQLLQSFHGH--GA--DVLCLDLAPSETGNTFVSGGCD-----------KKAMVWDMRSGQCVQAFE--T 238 (354)
T ss_dssp SEEEEEETTTCCEEEEEECC--SS--CEEEEEECCCSSCCEEEEEETT-----------SCEEEEETTTCCEEEEEC--C
T ss_pred CcEEEEeCCCCeEEEEEcCC--CC--CeEEEEEEeCCCCCEEEEEeCC-----------CeEEEEECCCCcEEEEec--C
Confidence 35778888877644321111 11 1111222 34677777753 357889998876543321 1
Q ss_pred CCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEc
Q 006473 177 PSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYG 252 (643)
Q Consensus 177 P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv~G 252 (643)
... .-.++.+ ++.+++.|+.+ ..+.+||+.+..-..+... .....+...+.+ ++.+++.|
T Consensus 239 h~~--~v~~v~~~p~~~~l~s~s~D---------~~v~lwd~~~~~~~~~~~~-----~~~~~~~~~~~~s~~g~~l~~g 302 (354)
T 2pbi_B 239 HES--DVNSVRYYPSGDAFASGSDD---------ATCRLYDLRADREVAIYSK-----ESIIFGASSVDFSLSGRLLFAG 302 (354)
T ss_dssp CSS--CEEEEEECTTSSEEEEEETT---------SCEEEEETTTTEEEEEECC-----TTCCSCEEEEEECTTSSEEEEE
T ss_pred CCC--CeEEEEEeCCCCEEEEEeCC---------CeEEEEECCCCcEEEEEcC-----CCcccceeEEEEeCCCCEEEEE
Confidence 111 1122333 45666777743 3577888877643222211 111122222222 66777777
Q ss_pred CCCCCCCCccCCCCCCceeeeEEEEeCCCCeeE-EeccCCCCCCCceeeEEEEE-CCeEEEecccc
Q 006473 253 GYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS-KVKKIGMPPGPRAGFSMCVH-KKRALLFGGVV 316 (643)
Q Consensus 253 G~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~-~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~ 316 (643)
+.++. +.+||+.+..-. .+. + ....-.++++. +++.++.|+.+
T Consensus 303 ~~d~~----------------i~vwd~~~~~~~~~l~--~---h~~~v~~l~~spdg~~l~sgs~D 347 (354)
T 2pbi_B 303 YNDYT----------------INVWDVLKGSRVSILF--G---HENRVSTLRVSPDGTAFCSGSWD 347 (354)
T ss_dssp ETTSC----------------EEEEETTTCSEEEEEC--C---CSSCEEEEEECTTSSCEEEEETT
T ss_pred ECCCc----------------EEEEECCCCceEEEEE--C---CCCcEEEEEECCCCCEEEEEcCC
Confidence 76654 778887654321 121 1 11112233333 56777777754
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=93.24 E-value=7.6 Score=39.00 Aligned_cols=211 Identities=10% Similarity=0.054 Sum_probs=108.2
Q ss_pred ceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCC--cEEEecCCCC----CCCc-eeeEEEEE--CCEEEEEe
Q 006473 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNS----PPPR-SAHQAVSW--KNYLYIFG 141 (643)
Q Consensus 71 ~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~~----P~pR-s~ha~~~~--~~~iyvfG 141 (643)
.+.+++.+ ++.||+.... .+.|++|++... .-..+..... +... .-..+++. ++.|||..
T Consensus 93 p~gia~d~--~g~l~v~d~~---------~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d 161 (329)
T 3fvz_A 93 PHGLSIDT--DGNYWVTDVA---------LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSD 161 (329)
T ss_dssp EEEEEECT--TSCEEEEETT---------TTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEE
T ss_pred ceEEEECC--CCCEEEEECC---------CCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEe
Confidence 34555554 5667776541 246888888765 2223321100 0111 12233443 57899997
Q ss_pred CccCCCCCCcceecCeEEEEECCCCcEEEeccCCC-----CCCCc-eeEEEEE-C-CEEEEEeeeecCCCceeeeccEEE
Q 006473 142 GEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-----PSPRS-GHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLYV 213 (643)
Q Consensus 142 G~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~-----P~~Rs-~h~~~~~-~-~~lyvfGG~~~~~~~~~~~~dv~~ 213 (643)
+.. .+.+++||.....-..+...+. +.... -+++++- + +.||+.... .+.|.+
T Consensus 162 ~~~----------~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~---------~~~I~~ 222 (329)
T 3fvz_A 162 GYC----------NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE---------NGRIQC 222 (329)
T ss_dssp CSS----------CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT---------TTEEEE
T ss_pred CCC----------CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC---------CCEEEE
Confidence 521 2568899865544444432111 11111 2344443 3 799987542 357999
Q ss_pred EEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCC
Q 006473 214 FDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMP 293 (643)
Q Consensus 214 yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~ 293 (643)
||+.+.+....-..+ .....-++++...+.+|+..|.... .......++++++.+.+....-..+ .
T Consensus 223 ~~~~~G~~~~~~~~~----~~~~~~~~~~~~pg~~~~~~g~~~v---------~~~~~~~v~~~~~~~g~~~~~~~~~-~ 288 (329)
T 3fvz_A 223 FKTDTKEFVREIKHA----SFGRNVFAISYIPGFLFAVNGKPYF---------GDQEPVQGFVMNFSSGEIIDVFKPV-R 288 (329)
T ss_dssp EETTTCCEEEEECCT----TTTTCEEEEEEETTEEEEEECCCCT---------TCSCCCCEEEEETTTCCEEEEECCS-S
T ss_pred EECCCCcEEEEEecc----ccCCCcceeeecCCEEEEeCCCEEe---------ccCCCcEEEEEEcCCCeEEEEEcCC-C
Confidence 999866654433221 1111222344445777777775332 0122346888998777655542211 0
Q ss_pred CCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECC
Q 006473 294 PGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD 339 (643)
Q Consensus 294 P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~ 339 (643)
.....-+++++. ++.|||.... .+.|++|++.
T Consensus 289 ~~~~~p~~ia~~~dG~lyvad~~--------------~~~I~~~~~~ 321 (329)
T 3fvz_A 289 KHFDMPHDIVASEDGTVYIGDAH--------------TNTVWKFTLT 321 (329)
T ss_dssp SCCSSEEEEEECTTSEEEEEESS--------------SCCEEEEEEE
T ss_pred CccCCeeEEEECCCCCEEEEECC--------------CCEEEEEeCC
Confidence 112223445554 5688887643 2458888764
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.21 E-value=2.7 Score=42.65 Aligned_cols=145 Identities=8% Similarity=0.216 Sum_probs=71.5
Q ss_pred EEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCc
Q 006473 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 74 ~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~ 151 (643)
+...| ++.+++.|+. + +.+.+|+.....+..+.... ........+.+ ++.+++.|+..
T Consensus 67 ~~~sp--~g~~l~s~s~--D-------~~v~iw~~~~~~~~~~~~~~--~h~~~v~~v~~sp~~~~l~s~s~D------- 126 (345)
T 3fm0_A 67 VAWSP--CGNYLASASF--D-------ATTCIWKKNQDDFECVTTLE--GHENEVKSVAWAPSGNLLATCSRD------- 126 (345)
T ss_dssp EEECT--TSSEEEEEET--T-------SCEEEEEECCC-EEEEEEEC--CCSSCEEEEEECTTSSEEEEEETT-------
T ss_pred EEECC--CCCEEEEEEC--C-------CcEEEEEccCCCeEEEEEcc--CCCCCceEEEEeCCCCEEEEEECC-------
Confidence 44444 5667777772 2 35667777777665443221 11111222333 56677777653
Q ss_pred ceecCeEEEEECCCC-cEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCC
Q 006473 152 FHHYKDFWMLDLKTN-QWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~-~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (643)
..+.+||+.+. .+..+... ......-..+.+ ++.+++.|+.+ ..+.+||..+..|..+....
T Consensus 127 ----~~v~iwd~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~l~s~s~d---------~~i~~w~~~~~~~~~~~~~~ 191 (345)
T 3fm0_A 127 ----KSVWVWEVDEEDEYECVSVL--NSHTQDVKHVVWHPSQELLASASYD---------DTVKLYREEEDDWVCCATLE 191 (345)
T ss_dssp ----SCEEEEEECTTSCEEEEEEE--CCCCSCEEEEEECSSSSCEEEEETT---------SCEEEEEEETTEEEEEEEEC
T ss_pred ----CeEEEEECCCCCCeEEEEEe--cCcCCCeEEEEECCCCCEEEEEeCC---------CcEEEEEecCCCEEEEEEec
Confidence 34677777654 23322221 111111222333 45666677643 35778888888776554442
Q ss_pred CCCCCCCccceeEEEe-CCEEEEEcCCCCC
Q 006473 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (643)
Q Consensus 229 ~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~ 257 (643)
. ....-.+++.. ++.+++.|+.++.
T Consensus 192 ~----h~~~v~~l~~sp~g~~l~s~s~D~~ 217 (345)
T 3fm0_A 192 G----HESTVWSLAFDPSGQRLASCSDDRT 217 (345)
T ss_dssp C----CSSCEEEEEECTTSSEEEEEETTSC
T ss_pred C----CCCceEEEEECCCCCEEEEEeCCCe
Confidence 1 11111222222 5667777777654
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=93.17 E-value=7.5 Score=38.70 Aligned_cols=118 Identities=12% Similarity=0.053 Sum_probs=68.4
Q ss_pred CCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCcc
Q 006473 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEF 144 (643)
Q Consensus 66 P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~ 144 (643)
|.+.....+++.+ ++.||+.--. .+.|++||+....-..+.. +..-+.++.. ++.|||.....
T Consensus 29 p~~~~pegia~~~--~g~lyv~d~~---------~~~I~~~d~~g~~~~~~~~-----~~~p~gia~~~dG~l~vad~~~ 92 (306)
T 2p4o_A 29 PVNTFLENLASAP--DGTIFVTNHE---------VGEIVSITPDGNQQIHATV-----EGKVSGLAFTSNGDLVATGWNA 92 (306)
T ss_dssp CTTCCEEEEEECT--TSCEEEEETT---------TTEEEEECTTCCEEEEEEC-----SSEEEEEEECTTSCEEEEEECT
T ss_pred CCCCCcceEEECC--CCCEEEEeCC---------CCeEEEECCCCceEEEEeC-----CCCceeEEEcCCCcEEEEeccC
Confidence 3445566777765 5678887531 2468999988753222221 1233444443 56788875321
Q ss_pred CCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCC
Q 006473 145 TSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (643)
Q Consensus 145 ~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~ 219 (643)
. -..+++||+.+.+.+.+.. .+..+.....+.+ ++.+|+.-- ....+|++|+.+.
T Consensus 93 ~---------~~~v~~~d~~~g~~~~~~~--~~~~~~~~g~~~~~~~~~~v~d~---------~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 93 D---------SIPVVSLVKSDGTVETLLT--LPDAIFLNGITPLSDTQYLTADS---------YRGAIWLIDVVQP 148 (306)
T ss_dssp T---------SCEEEEEECTTSCEEEEEE--CTTCSCEEEEEESSSSEEEEEET---------TTTEEEEEETTTT
T ss_pred C---------cceEEEEcCCCCeEEEEEe--CCCccccCcccccCCCcEEEEEC---------CCCeEEEEeCCCC
Confidence 0 1248899988888876654 3444555555544 456666421 1357899998764
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=93.15 E-value=7.9 Score=38.90 Aligned_cols=200 Identities=10% Similarity=0.005 Sum_probs=104.1
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCC--cEEEeccCCC-
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQLNLKGC- 176 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~--~W~~~~~~g~- 176 (643)
+.++++|+.+++........ .-..-+.+++. ++.|||.... .+.+.+||+... .-..+...+.
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~--~~~~p~gia~d~~g~l~v~d~~-----------~~~v~~~~~~g~~~~~~~~~~~~~~ 135 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKN--LFYLPHGLSIDTDGNYWVTDVA-----------LHQVFKLDPHSKEGPLLILGRSMQP 135 (329)
T ss_dssp CCEEEECTTTCCEEEEECTT--TCSSEEEEEECTTSCEEEEETT-----------TTEEEEECTTCSSCCSEEESBTTBC
T ss_pred CcEEEEECCCCeEEeccCCC--ccCCceEEEECCCCCEEEEECC-----------CCEEEEEeCCCCeEEEEEecccCCC
Confidence 46999999877765432211 11122333333 5679987653 246889998655 2222322111
Q ss_pred ---CCCCce-eEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCC--CCCc-cceeEEEe-C-
Q 006473 177 ---PSPRSG-HRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW--PSPR-SGFQFFVY-Q- 245 (643)
Q Consensus 177 ---P~~Rs~-h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~--P~~R-~~~s~~~~-~- 245 (643)
...... ..+++. ++.||+..++. .+.|.+||+....-..+.....+.. +... .-+++++. +
T Consensus 136 g~~~~~~~~P~~ia~~~~~g~lyv~d~~~--------~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~ 207 (329)
T 3fvz_A 136 GSDQNHFCQPTDVAVEPSTGAVFVSDGYC--------NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHL 207 (329)
T ss_dssp CCSTTCCSSEEEEEECTTTCCEEEEECSS--------CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTT
T ss_pred CCCccccCCCcEEEEeCCCCeEEEEeCCC--------CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCC
Confidence 111112 233443 57899987521 3568888865443333322211000 1111 11234443 3
Q ss_pred CEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCcccc
Q 006473 246 DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVI 325 (643)
Q Consensus 246 ~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~ 325 (643)
+.|||....+.. +.+|++.+.+....-.. +.....-.++++..+.+|+..|.....
T Consensus 208 g~l~v~d~~~~~----------------I~~~~~~~G~~~~~~~~--~~~~~~~~~~~~~pg~~~~~~g~~~v~------ 263 (329)
T 3fvz_A 208 DQLCVADRENGR----------------IQCFKTDTKEFVREIKH--ASFGRNVFAISYIPGFLFAVNGKPYFG------ 263 (329)
T ss_dssp TEEEEEETTTTE----------------EEEEETTTCCEEEEECC--TTTTTCEEEEEEETTEEEEEECCCCTT------
T ss_pred CEEEEEECCCCE----------------EEEEECCCCcEEEEEec--cccCCCcceeeecCCEEEEeCCCEEec------
Confidence 899998765433 88999886655443221 112222335555567777777753221
Q ss_pred ccccCCcEEEEECCCCcEEEe
Q 006473 326 MSLFLNELYGFQLDNHRWYPL 346 (643)
Q Consensus 326 ~~~~~ndl~~yd~~t~~W~~l 346 (643)
....+.+++|++.+.+....
T Consensus 264 -~~~~~~v~~~~~~~g~~~~~ 283 (329)
T 3fvz_A 264 -DQEPVQGFVMNFSSGEIIDV 283 (329)
T ss_dssp -CSCCCCEEEEETTTCCEEEE
T ss_pred -cCCCcEEEEEEcCCCeEEEE
Confidence 12245799999888765543
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=93.14 E-value=8.7 Score=39.38 Aligned_cols=186 Identities=12% Similarity=0.060 Sum_probs=87.9
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCcee-eEEEEE---CCEEEEEeCccCCCCCCcceecCeEEEEECCCCc--EEEeccC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSA-HQAVSW---KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLK 174 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~-ha~~~~---~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~--W~~~~~~ 174 (643)
..+..||+.++.-...-....|..... ...+.+ ++.+++.|+.. ..+.+||+.... -..+..
T Consensus 180 ~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D-----------~~v~~wd~~~~~~~~~~~~~- 247 (380)
T 3iz6_a 180 QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD-----------TTVRLWDLRITSRAVRTYHG- 247 (380)
T ss_dssp SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT-----------SCEEEEETTTTCCCCEEECC-
T ss_pred CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC-----------CeEEEEECCCCCcceEEECC-
Confidence 357788888876543322111111111 112222 56788888753 347778875321 111111
Q ss_pred CCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCc-cceeEEEe-CCEEEEE
Q 006473 175 GCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR-SGFQFFVY-QDEVFLY 251 (643)
Q Consensus 175 g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R-~~~s~~~~-~~~iyv~ 251 (643)
..... .+++.. ++..++.|+.+ ..+.+||+.+..-...-........... .-.+++.. ++.+++.
T Consensus 248 --h~~~v-~~v~~~p~~~~l~s~s~D---------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 315 (380)
T 3iz6_a 248 --HEGDI-NSVKFFPDGQRFGTGSDD---------GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFA 315 (380)
T ss_dssp --CSSCC-CEEEECTTSSEEEEECSS---------SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEE
T ss_pred --cCCCe-EEEEEecCCCeEEEEcCC---------CeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEE
Confidence 11111 122222 55666777653 3578889887654332221100000000 11122222 6777777
Q ss_pred cCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEE-eccCCCCCCCceeeEEEEE-CCeEEEeccccccccCcccccccc
Q 006473 252 GGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK-VKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLF 329 (643)
Q Consensus 252 GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~-l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~ 329 (643)
|+.++. +.+||+.+..-.. +.........+. .++++. ++..++.||.+.
T Consensus 316 g~~dg~----------------i~vwd~~~~~~~~~~~~~~~~h~~~v-~~l~~s~dg~~l~sgs~D~------------ 366 (380)
T 3iz6_a 316 GYSNGD----------------CYVWDTLLAEMVLNLGTLQNSHEGRI-SCLGLSSDGSALCTGSWDK------------ 366 (380)
T ss_dssp ECTTSC----------------EEEEETTTCCEEEEECCSCSSCCCCC-CEEEECSSSSEEEEECTTS------------
T ss_pred EECCCC----------------EEEEECCCCceEEEEecccCCCCCce-EEEEECCCCCEEEEeeCCC------------
Confidence 776655 7888876654332 211100011111 223333 677888887643
Q ss_pred CCcEEEEECCCC
Q 006473 330 LNELYGFQLDNH 341 (643)
Q Consensus 330 ~ndl~~yd~~t~ 341 (643)
.|.+|++...
T Consensus 367 --~i~iW~~~~~ 376 (380)
T 3iz6_a 367 --NLKIWAFSGH 376 (380)
T ss_dssp --CEEEEECCSS
T ss_pred --CEEEEecCCC
Confidence 4777877654
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.14 E-value=1.9 Score=43.96 Aligned_cols=50 Identities=10% Similarity=-0.049 Sum_probs=27.3
Q ss_pred EEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCCC
Q 006473 274 LWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (643)
Q Consensus 274 v~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (643)
+.+||+.+..-...-. + . ...-.++++. ++.+++.||.. ..|.+||+.+.
T Consensus 316 i~v~d~~~~~~~~~~~-~--~-~~~v~~~~~s~~~~~l~s~~~d--------------g~i~iw~~~~~ 366 (408)
T 4a11_B 316 IAVYTVYSGEQITMLK-G--H-YKTVDCCVFQSNFQELYSGSRD--------------CNILAWVPSLY 366 (408)
T ss_dssp EEEEETTTCCEEEEEC-C--C-SSCEEEEEEETTTTEEEEEETT--------------SCEEEEEECC-
T ss_pred EEEEECcCCcceeeec-c--C-CCeEEEEEEcCCCCEEEEECCC--------------CeEEEEeCCCC
Confidence 7788877654333221 1 1 1122234444 56777777753 34888888764
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.10 E-value=1.8 Score=44.33 Aligned_cols=146 Identities=11% Similarity=-0.056 Sum_probs=72.6
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE---CCEEEEEeeeecCCCceeeecc
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYND 210 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~---~~~lyvfGG~~~~~~~~~~~~d 210 (643)
++.+++.|+.. ..+.++|+.+++-...-. ..... -.++.+ +..+++.|+.+ ..
T Consensus 138 dg~~l~sgs~d-----------~~i~iwd~~~~~~~~~~~--~h~~~--V~~~~~~~~~~~~l~s~s~D---------~~ 193 (344)
T 4gqb_B 138 SGTQAVSGSKD-----------ICIKVWDLAQQVVLSSYR--AHAAQ--VTCVAASPHKDSVFLSCSED---------NR 193 (344)
T ss_dssp TSSEEEEEETT-----------SCEEEEETTTTEEEEEEC--CCSSC--EEEEEECSSCTTEEEEEETT---------SC
T ss_pred CCCEEEEEeCC-----------CeEEEEECCCCcEEEEEc--CcCCc--eEEEEecCCCCCceeeeccc---------cc
Confidence 56677777653 357888998775433211 11111 112222 33567777643 35
Q ss_pred EEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEE-e
Q 006473 211 LYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK-V 287 (643)
Q Consensus 211 v~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~-l 287 (643)
|.+||+.+.+-...-... .......+++.. ++.+++.|+.++. +.+||+.+.+-.. +
T Consensus 194 v~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~p~~~~~l~sg~~dg~----------------v~~wd~~~~~~~~~~ 253 (344)
T 4gqb_B 194 ILLWDTRCPKPASQIGCS----APGYLPTSLAWHPQQSEVFVFGDENGT----------------VSLVDTKSTSCVLSS 253 (344)
T ss_dssp EEEEETTSSSCEEECC--------CCCEEEEEECSSCTTEEEEEETTSE----------------EEEEESCC--CCEEE
T ss_pred cccccccccceeeeeecc----eeeccceeeeecCCCCcceEEeccCCc----------------EEEEECCCCcEEEEE
Confidence 788898876543321110 011111122222 5678888877654 6778876543211 1
Q ss_pred ccCCCCCCCceeeEEEEE-C-CeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 288 KKIGMPPGPRAGFSMCVH-K-KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 288 ~~~g~~P~~R~g~s~~~~-~-~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
.. ....-.++++. + .++++.|+.. ..|.+||+.+.+
T Consensus 254 ~~-----h~~~v~~v~fsp~g~~~lasgs~D--------------~~i~vwd~~~~~ 291 (344)
T 4gqb_B 254 AV-----HSQCVTGLVFSPHSVPFLASLSED--------------CSLAVLDSSLSE 291 (344)
T ss_dssp EC-----CSSCEEEEEECSSSSCCEEEEETT--------------SCEEEECTTCCE
T ss_pred cC-----CCCCEEEEEEccCCCeEEEEEeCC--------------CeEEEEECCCCc
Confidence 11 01112233443 3 3566666643 348899988765
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=93.01 E-value=5.5 Score=44.24 Aligned_cols=116 Identities=14% Similarity=0.164 Sum_probs=63.5
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCC--cEEEecCCCC-CCCce---eeEEEEECCEEEEEeCccCCCCCCccee
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNS-PPPRS---AHQAVSWKNYLYIFGGEFTSPNQERFHH 154 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~~-P~pRs---~ha~~~~~~~iyvfGG~~~~~~~~~~~~ 154 (643)
++.||+.+.. +.|+++|..++ .|+.-..... ..+.+ ..+.++.++.||+...
T Consensus 68 ~g~vyv~~~~----------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~------------ 125 (582)
T 1flg_A 68 DGVIYVTASY----------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL------------ 125 (582)
T ss_dssp TTEEEEEETT----------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET------------
T ss_pred CCEEEEEcCC----------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC------------
Confidence 7888887651 24899999876 4886543210 00111 1233456888888532
Q ss_pred cCeEEEEECCCCc--EEEeccCCCCCCC--ceeEEEEECC------EEEEEeeeecCCCceeeeccEEEEEcCCCc--eE
Q 006473 155 YKDFWMLDLKTNQ--WEQLNLKGCPSPR--SGHRMVLYKH------KIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQ 222 (643)
Q Consensus 155 ~~dv~~yD~~t~~--W~~~~~~g~P~~R--s~h~~~~~~~------~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~ 222 (643)
-..++.+|..|++ |+.-... +... ...+-++.++ .||+ |..... ......|+.||+.+.+ |+
T Consensus 126 dg~l~AlD~~TG~~~W~~~~~~--~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~~e---~~~~g~v~alD~~tG~~~W~ 199 (582)
T 1flg_A 126 DASVVALNKNTGKVVWKKKFAD--HGAGYTMTGAPTIVKDGKTGKVLLIH-GSSGDE---FGVVGRLFARDPDTGEEIWM 199 (582)
T ss_dssp TTEEEEEESSSCCEEEEEECSC--GGGTCBCCSCCEEEECTTTCCEEEEE-CCBCGG---GCCBCEEEEECTTTCCEEEE
T ss_pred CCEEEEEECCCCCEEeeecCCC--CCcCcccccCCEEeCCCcCCcEEEEE-eccccc---cCCCCEEEEEECCCCCEEee
Confidence 1468999998875 8764321 1111 1112234455 5554 332110 1124579999998765 86
Q ss_pred Ee
Q 006473 223 EI 224 (643)
Q Consensus 223 ~v 224 (643)
.-
T Consensus 200 ~~ 201 (582)
T 1flg_A 200 RP 201 (582)
T ss_dssp EE
T ss_pred cC
Confidence 53
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.98 E-value=1.2 Score=45.55 Aligned_cols=151 Identities=14% Similarity=0.044 Sum_probs=74.6
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccE
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv 211 (643)
++.+++.|+.. ..+.+||+.+..-..... .+........... ++.+++.|+.+ ..+
T Consensus 111 ~~~~l~s~~~d-----------~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v 168 (408)
T 4a11_B 111 DTGMFTSSSFD-----------KTLKVWDTNTLQTADVFN--FEETVYSHHMSPVSTKHCLVAVGTRG---------PKV 168 (408)
T ss_dssp CTTCEEEEETT-----------SEEEEEETTTTEEEEEEE--CSSCEEEEEECSSCSSCCEEEEEESS---------SSE
T ss_pred CCcEEEEEeCC-----------CeEEEeeCCCCccceecc--CCCceeeeEeecCCCCCcEEEEEcCC---------CeE
Confidence 44566666642 458889998876554433 2222222111111 33466666642 468
Q ss_pred EEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCe--eEEe
Q 006473 212 YVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE--WSKV 287 (643)
Q Consensus 212 ~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~--W~~l 287 (643)
.+||+.+..-...-.. ....-.++... +..+++.|+.++. +.+||+.+.. ...+
T Consensus 169 ~~~d~~~~~~~~~~~~------~~~~v~~~~~~~~~~~ll~~~~~dg~----------------i~i~d~~~~~~~~~~~ 226 (408)
T 4a11_B 169 QLCDLKSGSCSHILQG------HRQEILAVSWSPRYDYILATASADSR----------------VKLWDVRRASGCLITL 226 (408)
T ss_dssp EEEESSSSCCCEEECC------CCSCEEEEEECSSCTTEEEEEETTSC----------------EEEEETTCSSCCSEEC
T ss_pred EEEeCCCcceeeeecC------CCCcEEEEEECCCCCcEEEEEcCCCc----------------EEEEECCCCCcccccc
Confidence 8899876543222111 11111222223 3347888887665 7778875442 2222
Q ss_pred ccCC---------C-CCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 288 KKIG---------M-PPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 288 ~~~g---------~-~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
.... . ......-.++++. ++..++.|+.. +.|.+||+.+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~vwd~~~~~ 278 (408)
T 4a11_B 227 DQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD--------------NRMRLWNSSNGE 278 (408)
T ss_dssp CTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETT--------------SCEEEEETTTCC
T ss_pred cccccccceeeccccccccCceeEEEEcCCCCEEEEecCC--------------CeEEEEECCCCc
Confidence 1100 0 0111112233333 56677777653 348999998764
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.97 E-value=0.67 Score=53.23 Aligned_cols=198 Identities=12% Similarity=0.127 Sum_probs=98.9
Q ss_pred CEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--C--CEEEEEeCccCCCCCCcceecCe
Q 006473 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--K--NYLYIFGGEFTSPNQERFHHYKD 157 (643)
Q Consensus 82 ~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~--~~iyvfGG~~~~~~~~~~~~~~d 157 (643)
+.+++.|+. + +.+.+||+.++.|..+.... ........+.+ + +.++++|+.. ..
T Consensus 67 ~~~l~s~s~--D-------g~I~vwd~~~~~~~~~~~~~--~h~~~V~~v~~sp~~~~~~l~sgs~d-----------g~ 124 (753)
T 3jro_A 67 GTILASCSY--D-------GKVLIWKEENGRWSQIAVHA--VHSASVNSVQWAPHEYGPLLLVASSD-----------GK 124 (753)
T ss_dssp CSEEEEEET--T-------SCEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEETT-----------SE
T ss_pred CCEEEEEeC--C-------CeEEEEECCCCccccccccc--CCCCCeEEEEECCCCCCCEEEEEeCC-----------Cc
Confidence 667777772 2 46888999999887654322 11122223333 3 6677777742 35
Q ss_pred EEEEECCCCcEEE-eccCCCCCCCceeEEEEE---------------CCEEEEEeeeecCCCceeeeccEEEEEcCCC--
Q 006473 158 FWMLDLKTNQWEQ-LNLKGCPSPRSGHRMVLY---------------KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF-- 219 (643)
Q Consensus 158 v~~yD~~t~~W~~-~~~~g~P~~Rs~h~~~~~---------------~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~-- 219 (643)
+.+||+.+..-.. ....+.+. .-.++.+ ++.+++.|+.+ ..+.+||+.+.
T Consensus 125 I~vwdl~~~~~~~~~~~~~~~~---~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~d---------g~I~iwd~~~~~~ 192 (753)
T 3jro_A 125 VSVVEFKENGTTSPIIIDAHAI---GVNSASWAPATIEEDGEHNGTKESRKFVTGGAD---------NLVKIWKYNSDAQ 192 (753)
T ss_dssp EEEEECCSSSCCCCEEEECCSS---CEEEEEECCCC---------CGGGCCEEEEETT---------SCEEEEEEETTTT
T ss_pred EEEEEeecCCCcceeEeecCCC---ceEEEEecCcccccccccccCCCCCEEEEEECC---------CeEEEEeccCCcc
Confidence 7788877652111 11100111 1112222 24566666643 34777776544
Q ss_pred ceEEeccCCCCCCCCCccceeEEEe-C---CEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCe--eEEeccCCCC
Q 006473 220 KWQEIKPRFGSMWPSPRSGFQFFVY-Q---DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE--WSKVKKIGMP 293 (643)
Q Consensus 220 ~W~~v~~~~~~~~P~~R~~~s~~~~-~---~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~--W~~l~~~g~~ 293 (643)
.+..+..... ....-.+++.. + +.+++.||.++. +.+||+.+.. +...... ..
T Consensus 193 ~~~~~~~~~~----h~~~V~~l~~sp~~~~~~~l~s~s~Dg~----------------I~iwd~~~~~~~~~~~~~~-~~ 251 (753)
T 3jro_A 193 TYVLESTLEG----HSDWVRDVAWSPTVLLRSYLASVSQDRT----------------CIIWTQDNEQGPWKKTLLK-EE 251 (753)
T ss_dssp EEEEEEEECC----CSSCEEEEEECCCCSSSEEEEEEESSSC----------------EEEEEESSSSSCCBCCBSS-SS
T ss_pred cceeeeeecC----CCCcEEEEEeccCCCCCCEEEEEecCCE----------------EEEecCCCCCCcceeEEec-cC
Confidence 3444433311 11111223333 4 788888888765 6677765532 2211110 00
Q ss_pred CCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCC-CcEEEeEe
Q 006473 294 PGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN-HRWYPLEL 348 (643)
Q Consensus 294 P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t-~~W~~l~~ 348 (643)
.....-.++++. ++..++.||.+ +.|.+|++.+ ..|..+..
T Consensus 252 ~~~~~v~~l~~spdg~~l~s~s~D--------------g~I~vwd~~~~~~~~~~~~ 294 (753)
T 3jro_A 252 KFPDVLWRASWSLSGNVLALSGGD--------------NKVTLWKENLEGKWEPAGE 294 (753)
T ss_dssp CCSSCCCCEEECTTTCCEEEECSS--------------SCEECCBCCSSSCCBCCCC
T ss_pred CCCCceEEEEEcCCCCEEEEEcCC--------------CEEEEEecCCCCCcccccc
Confidence 111112233333 56777777753 3488888874 46665544
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=92.95 E-value=8.5 Score=38.72 Aligned_cols=188 Identities=13% Similarity=0.070 Sum_probs=93.0
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDF 158 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv 158 (643)
++.+++.||. + ..+.+||..+..-...-.. .......+.+ ++.+++.||.. ..+
T Consensus 66 d~~~l~s~s~--D-------g~v~iWd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~s~~~d-----------~~v 121 (340)
T 1got_B 66 DSRLLLSASQ--D-------GKLIIWDSYTTNKVHAIPL----RSSWVMTCAYAPSGNYVACGGLD-----------NIC 121 (340)
T ss_dssp TSSEEEEEET--T-------TEEEEEETTTCCEEEEEEC----SSSCEEEEEECTTSSEEEEEETT-----------CEE
T ss_pred CCCEEEEEeC--C-------CcEEEEECCCCCcceEeec----CCccEEEEEECCCCCEEEEEeCC-----------CeE
Confidence 5677777772 2 3678889877654322111 1111222333 55666777642 356
Q ss_pred EEEECCCCc--EEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCc
Q 006473 159 WMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR 236 (643)
Q Consensus 159 ~~yD~~t~~--W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R 236 (643)
.+||+.+.. ....................-++. ++.|+. -..+.+||+.+..-...-.. ...
T Consensus 122 ~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~---------d~~i~~wd~~~~~~~~~~~~------h~~ 185 (340)
T 1got_B 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSG---------DTTCALWDIETGQQTTTFTG------HTG 185 (340)
T ss_dssp EEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEET---------TSCEEEEETTTTEEEEEECC------CSS
T ss_pred EEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEEC---------CCcEEEEECCCCcEEEEEcC------CCC
Confidence 778876642 111111000111111111122555 444543 24578889887653322111 111
Q ss_pred cceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEecc
Q 006473 237 SGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGG 314 (643)
Q Consensus 237 ~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG 314 (643)
.-.+++.. ++.+++.|+.++. +.+||+.+..-...-. + ....-.++++. ++.+++.|+
T Consensus 186 ~v~~~~~~~~~~~l~sg~~d~~----------------v~~wd~~~~~~~~~~~-~---h~~~v~~v~~~p~~~~l~s~s 245 (340)
T 1got_B 186 DVMSLSLAPDTRLFVSGACDAS----------------AKLWDVREGMCRQTFT-G---HESDINAICFFPNGNAFATGS 245 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSC----------------EEEEETTTCSEEEEEC-C---CSSCEEEEEECTTSSEEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCc----------------EEEEECCCCeeEEEEc-C---CcCCEEEEEEcCCCCEEEEEc
Confidence 11223333 6678888887765 7788877654332211 1 11112233443 567777777
Q ss_pred ccccccCccccccccCCcEEEEECCCCc
Q 006473 315 VVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 315 ~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
.. ..|.+||+.+.+
T Consensus 246 ~d--------------~~v~iwd~~~~~ 259 (340)
T 1got_B 246 DD--------------ATCRLFDLRADQ 259 (340)
T ss_dssp TT--------------SCEEEEETTTTE
T ss_pred CC--------------CcEEEEECCCCc
Confidence 53 348899987754
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=92.95 E-value=3.4 Score=41.50 Aligned_cols=172 Identities=18% Similarity=0.185 Sum_probs=80.6
Q ss_pred ceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECC-CCcEEEecCCCCCCCceeeEEEEE-C-CEEEEEeCccCCC
Q 006473 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVE-KQEWKVISSPNSPPPRSAHQAVSW-K-NYLYIFGGEFTSP 147 (643)
Q Consensus 71 ~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~-~~~W~~l~s~~~P~pRs~ha~~~~-~-~~iyvfGG~~~~~ 147 (643)
.+.+++.| +++||+.+. + .+.+++|++. +.+...+.....+....-..++.. + ..||+.+....
T Consensus 143 ~~~~~~sp--dg~l~v~~~----~-----~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~-- 209 (347)
T 3hfq_A 143 IHYTDLTP--DNRLAVIDL----G-----SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSS-- 209 (347)
T ss_dssp EEEEEECT--TSCEEEEET----T-----TTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTT--
T ss_pred ceEEEECC--CCcEEEEeC----C-----CCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCC--
Confidence 34466666 556666544 1 1468888888 565554321111111111112222 3 45887654311
Q ss_pred CCCcceecCeEEEEECCCCcEEEeccCC-CCCC---CceeEEEEE---CCEEEEEeeeecCCCceeeeccEEEEEcC-CC
Q 006473 148 NQERFHHYKDFWMLDLKTNQWEQLNLKG-CPSP---RSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLD-QF 219 (643)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~W~~~~~~g-~P~~---Rs~h~~~~~---~~~lyvfGG~~~~~~~~~~~~dv~~yD~~-t~ 219 (643)
.-.+|.++..++.+..+.... .|.. ......+.+ +.+||+.+.. .+.+.+|++. ..
T Consensus 210 -------~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~---------~~~v~v~~~~~~g 273 (347)
T 3hfq_A 210 -------QIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG---------YNTLAVFAVTADG 273 (347)
T ss_dssp -------EEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET---------TTEEEEEEECGGG
T ss_pred -------EEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC---------CCEEEEEEECCCC
Confidence 123455565567765443211 1221 122233333 3467776542 2467788875 23
Q ss_pred ceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEecc
Q 006473 220 KWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (643)
Q Consensus 220 ~W~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~ 289 (643)
.+..+...+... ..+ ..++.. +..||+.+..... -.+|.+|+.+.+-..+..
T Consensus 274 ~~~~~~~~~~~~-~~~---~~~~~spdg~~l~v~~~~~~~--------------v~v~~~d~~tg~l~~~~~ 327 (347)
T 3hfq_A 274 HLTLIQQISTEG-DFP---RDFDLDPTEAFVVVVNQNTDN--------------ATLYARDLTSGKLSLLQK 327 (347)
T ss_dssp CEEEEEEEECSS-SCC---CEEEECTTSSEEEEEETTTTE--------------EEEEEECTTTCCEEEEEE
T ss_pred cEEEeEEEecCC-CCc---CeEEECCCCCEEEEEEcCCCc--------------EEEEEEeCCCCeEEeccc
Confidence 455554432100 111 123333 4456665443222 235556888888777654
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=92.75 E-value=1.9 Score=43.93 Aligned_cols=213 Identities=9% Similarity=0.067 Sum_probs=98.7
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCE-EEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNY-LYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~-iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (643)
..+|.+|+.+++...+... .....+....- ++. |++... .... .....+|.+|+.+..+..+.. ..
T Consensus 168 ~~l~~~d~~~g~~~~~~~~---~~~~~~~~~sp~dg~~l~~~~~-~~~~-----~~~~~l~~~d~~~~~~~~l~~---~~ 235 (396)
T 3c5m_A 168 CRLIKVDIETGELEVIHQD---TAWLGHPIYRPFDDSTVGFCHE-GPHD-----LVDARMWLVNEDGSNVRKIKE---HA 235 (396)
T ss_dssp EEEEEEETTTCCEEEEEEE---SSCEEEEEEETTEEEEEEEEEC-SCSS-----SCSCCCEEEETTSCCCEESSC---CC
T ss_pred ceEEEEECCCCcEEeeccC---CcccccceECCCCCCEEEEEec-CCCC-----CCCceEEEEECCCCceeEeec---cC
Confidence 4789999999888877532 11222222222 244 444332 1110 112579999998888776643 11
Q ss_pred CCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCC
Q 006473 179 PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSK 256 (643)
Q Consensus 179 ~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~ 256 (643)
+........+ ++..+++.+..... ....|+++|+.+.....+... +. ........++.++++++..
T Consensus 236 ~~~~~~~~~~spdg~~l~~~~~~~~~----~~~~l~~~d~~~g~~~~l~~~-----~~--~~~~~s~~dg~~l~~~~~~- 303 (396)
T 3c5m_A 236 EGESCTHEFWIPDGSAMAYVSYFKGQ----TDRVIYKANPETLENEEVMVM-----PP--CSHLMSNFDGSLMVGDGCD- 303 (396)
T ss_dssp TTEEEEEEEECTTSSCEEEEEEETTT----CCEEEEEECTTTCCEEEEEEC-----CS--EEEEEECSSSSEEEEEECC-
T ss_pred CCccccceEECCCCCEEEEEecCCCC----ccceEEEEECCCCCeEEeeeC-----CC--CCCCccCCCCceEEEecCC-
Confidence 1212222333 44444444433221 123499999998887776544 21 1122222155566654422
Q ss_pred CCCCccC-CCCCCceeeeEEEEeCCCCeeEEeccCCCCC-----C-CceeeEEEE-ECCeEEEeccccccccCccccccc
Q 006473 257 EVSTDKN-QSEKGIIHSDLWSLDPRTWEWSKVKKIGMPP-----G-PRAGFSMCV-HKKRALLFGGVVDMEMKGDVIMSL 328 (643)
Q Consensus 257 ~~~~~~~-~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P-----~-~R~g~s~~~-~~~~iyvfGG~~~~~~~~~~~~~~ 328 (643)
....... ......-...+|++|+.+.....+....... . .......++ -+++.++|.....
T Consensus 304 ~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~----------- 372 (396)
T 3c5m_A 304 APVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFE----------- 372 (396)
T ss_dssp C----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT-----------
T ss_pred cceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCC-----------
Confidence 1000000 0000012356999999887776664321100 0 000111222 2454444544321
Q ss_pred cCCcEEEEECCCCcEEEeEe
Q 006473 329 FLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 329 ~~ndl~~yd~~t~~W~~l~~ 348 (643)
-...||.+++.+..+..+..
T Consensus 373 ~~~~l~~~~~~~~~~~~~~~ 392 (396)
T 3c5m_A 373 GVPAIYIADVPESYKHLEHH 392 (396)
T ss_dssp SSCEEEEEECCTTCC-----
T ss_pred CCceEEEEEEcccccccccc
Confidence 12469999998887766543
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=92.69 E-value=5.6 Score=41.39 Aligned_cols=94 Identities=12% Similarity=0.173 Sum_probs=53.8
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (643)
+.|+++|..+++...+-... .....-.++.+ ++.+++.|+.. ..+.+||+.+.+-..... ...
T Consensus 125 ~tV~lWd~~tg~~~~~~~~~--~~~~~V~sv~fspdg~~lasgs~D-----------g~v~iWd~~~~~~~~~~~--~h~ 189 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQME--QPGEYISSVAWIKEGNYLAVGTSS-----------AEVQLWDVQQQKRLRNMT--SHS 189 (420)
T ss_dssp TEEEEEETTTCCEEEEEECC--STTCCEEEEEECTTSSEEEEEETT-----------SCEEEEETTTTEEEEEEC--CCS
T ss_pred CEEEEEECCCCCEEEEEEec--CCCCcEEEEEECCCCCEEEEEECC-----------CeEEEEEcCCCcEEEEEe--CCC
Confidence 47999999998876553322 11222233334 56677777653 357889998876433221 122
Q ss_pred CCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 179 ~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
.+ ..++.+++.+++.|+.+ ..++.+|.....
T Consensus 190 ~~--v~~~s~~~~~l~sgs~d---------~~i~~~d~~~~~ 220 (420)
T 4gga_A 190 AR--VGSLSWNSYILSSGSRS---------GHIHHHDVRVAE 220 (420)
T ss_dssp SC--EEEEEEETTEEEEEETT---------SEEEEEETTSSS
T ss_pred Cc--eEEEeeCCCEEEEEeCC---------CceeEeeecccc
Confidence 22 23445567777777642 356677766543
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=92.55 E-value=11 Score=39.04 Aligned_cols=196 Identities=13% Similarity=0.246 Sum_probs=102.7
Q ss_pred CceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCC-CCC-C-c-------eeeEEEEE----CC
Q 006473 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN-SPP-P-R-------SAHQAVSW----KN 135 (643)
Q Consensus 70 ~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~-~P~-p-R-------s~ha~~~~----~~ 135 (643)
.-+++++.|.+.+.||+.+.. +. +-.-|++.+-...+|+.+..+. .|. + + .-+++++. .+
T Consensus 56 ~v~~i~~dp~~~~~l~~g~~~---g~---~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~ 129 (394)
T 3b7f_A 56 TIHHIVQDPREPERMLMAART---GH---LGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPG 129 (394)
T ss_dssp EEEEEEECSSSTTCEEEEEEC--------CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTT
T ss_pred ceEEEEECCCCCCeEEEEecC---CC---CCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCC
Confidence 345666665445678876542 11 1125777766778999886431 111 1 1 11223332 46
Q ss_pred EEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCC-CC--------------CCCceeEEEEE---CCEEEEEee
Q 006473 136 YLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CP--------------SPRSGHRMVLY---KHKIIVFGG 197 (643)
Q Consensus 136 ~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g-~P--------------~~Rs~h~~~~~---~~~lyvfGG 197 (643)
.||+.+. ..-+|+.+-...+|+.+.... .| ....-|++++. .+.||+..+
T Consensus 130 ~l~~g~~------------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~ 197 (394)
T 3b7f_A 130 TWYAGTS------------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS 197 (394)
T ss_dssp CEEEEEE------------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE
T ss_pred EEEEEec------------CCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC
Confidence 6777542 135778877778999875310 12 11122344433 256776532
Q ss_pred eecCCCceeeeccEEEEEcCCCceEEeccCCC-CCCCCC-----ccceeEEEe---CCEEEEEcCCCCCCCCccCCCCCC
Q 006473 198 FYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG-SMWPSP-----RSGFQFFVY---QDEVFLYGGYSKEVSTDKNQSEKG 268 (643)
Q Consensus 198 ~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~-~~~P~~-----R~~~s~~~~---~~~iyv~GG~~~~~~~~~~~~~~~ 268 (643)
. ..|++.+-...+|+.+..... ...|.+ ...++++.. .+.||+..+
T Consensus 198 ~----------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~--------------- 252 (394)
T 3b7f_A 198 S----------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH--------------- 252 (394)
T ss_dssp T----------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET---------------
T ss_pred C----------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC---------------
Confidence 1 236777666788998854211 111211 223444444 256666321
Q ss_pred ceeeeEEEEeCCCCeeEEeccCCCCCCC--ceeeEEEEE---CCeEEEec
Q 006473 269 IIHSDLWSLDPRTWEWSKVKKIGMPPGP--RAGFSMCVH---KKRALLFG 313 (643)
Q Consensus 269 ~~~~dv~~yd~~t~~W~~l~~~g~~P~~--R~g~s~~~~---~~~iyvfG 313 (643)
..+++.+-...+|+.+... .|.. ..++++++. .+.||+..
T Consensus 253 ---~gl~~s~D~G~tW~~~~~~--l~~~~~~~~~~i~~~p~~~~~l~~~t 297 (394)
T 3b7f_A 253 ---CGIYRMDRREGVWKRIGDA--MPREVGDIGFPIVVHQRDPRTVWVFP 297 (394)
T ss_dssp ---TEEEEEETTTTEEECGGGG--SCTTTCSCEEEEEECSSCTTCEEEEE
T ss_pred ---CeEEEeCCCCCcceECCCC--CCCCCccceEEEEECCCCCCEEEEEe
Confidence 1278888888999998641 2321 345555553 46677753
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=92.54 E-value=3.7 Score=40.72 Aligned_cols=142 Identities=11% Similarity=0.083 Sum_probs=69.3
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEE-ecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCC
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKV-ISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~-l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~ 150 (643)
++.+.| ++.+++.|+. + +.+..||..+..-.. +.... .+ -.++... ++.+++.|+..
T Consensus 18 ~~~fsp--~~~~l~s~~~--d-------g~v~lWd~~~~~~~~~~~~~~--~~--v~~~~~~~~~~~l~s~s~d------ 76 (304)
T 2ynn_A 18 GIDFHP--TEPWVLTTLY--S-------GRVELWNYETQVEVRSIQVTE--TP--VRAGKFIARKNWIIVGSDD------ 76 (304)
T ss_dssp EEEECS--SSSEEEEEET--T-------SEEEEEETTTTEEEEEEECCS--SC--EEEEEEEGGGTEEEEEETT------
T ss_pred EEEECC--CCCEEEEEcC--C-------CcEEEEECCCCceeEEeeccC--Cc--EEEEEEeCCCCEEEEECCC------
Confidence 445555 6777788872 2 367888988775432 22111 11 1122222 45566666642
Q ss_pred cceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCC
Q 006473 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (643)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (643)
..+.+||+.+.+-...-. + . ...-.+++.. ++.+++.|+.+ ..+.+||+.+. |.......
T Consensus 77 -----~~i~vwd~~~~~~~~~~~-~-h-~~~v~~~~~~~~~~~l~sgs~D---------~~v~lWd~~~~-~~~~~~~~- 137 (304)
T 2ynn_A 77 -----FRIRVFNYNTGEKVVDFE-A-H-PDYIRSIAVHPTKPYVLSGSDD---------LTVKLWNWENN-WALEQTFE- 137 (304)
T ss_dssp -----SEEEEEETTTCCEEEEEE-C-C-SSCEEEEEECSSSSEEEEEETT---------SCEEEEEGGGT-TEEEEEEC-
T ss_pred -----CEEEEEECCCCcEEEEEe-C-C-CCcEEEEEEcCCCCEEEEECCC---------CeEEEEECCCC-cchhhhhc-
Confidence 457788988765332111 1 1 1111222222 45566666643 35777887654 22222211
Q ss_pred CCCCCCccceeEEEe--CCEEEEEcCCCCC
Q 006473 230 SMWPSPRSGFQFFVY--QDEVFLYGGYSKE 257 (643)
Q Consensus 230 ~~~P~~R~~~s~~~~--~~~iyv~GG~~~~ 257 (643)
.....-.+++.. ++.+++.|+.++.
T Consensus 138 ---~h~~~v~~v~~~p~~~~~l~sgs~D~~ 164 (304)
T 2ynn_A 138 ---GHEHFVMCVAFNPKDPSTFASGCLDRT 164 (304)
T ss_dssp ---CCCSCEEEEEECTTCTTEEEEEETTSE
T ss_pred ---ccCCcEEEEEECCCCCCEEEEEeCCCe
Confidence 111111222332 4567888887765
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=92.53 E-value=9.6 Score=38.31 Aligned_cols=121 Identities=9% Similarity=-0.000 Sum_probs=65.4
Q ss_pred ceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEE-ECCEEEEEeCccCCCCC
Q 006473 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS-WKNYLYIFGGEFTSPNQ 149 (643)
Q Consensus 71 ~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~-~~~~iyvfGG~~~~~~~ 149 (643)
+.+.+..|. ++.||+++.. .+.|++|++.+++.+.+..+ . .-++++. -++.+||...
T Consensus 51 ~egp~~~~~-~~~l~~~d~~---------~~~i~~~d~~~~~~~~~~~~---~--~v~~i~~~~dg~l~v~~~------- 108 (326)
T 2ghs_A 51 GEGPTFDPA-SGTAWWFNIL---------ERELHELHLASGRKTVHALP---F--MGSALAKISDSKQLIASD------- 108 (326)
T ss_dssp EEEEEEETT-TTEEEEEEGG---------GTEEEEEETTTTEEEEEECS---S--CEEEEEEEETTEEEEEET-------
T ss_pred CcCCeEeCC-CCEEEEEECC---------CCEEEEEECCCCcEEEEECC---C--cceEEEEeCCCeEEEEEC-------
Confidence 344555542 3677777652 24789999998877655432 1 1222332 3678877642
Q ss_pred CcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEe
Q 006473 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (643)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (643)
..+++||+.+.+...+.......+......+.+ +++||+ |...... ......||+|+ +.+...+
T Consensus 109 ------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v-~~~~~~~--~~~~~~l~~~~--~g~~~~~ 174 (326)
T 2ghs_A 109 ------DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWI-GTMGRKA--ETGAGSIYHVA--KGKVTKL 174 (326)
T ss_dssp ------TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEE-EEEETTC--CTTCEEEEEEE--TTEEEEE
T ss_pred ------CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEE-EeCCCcC--CCCceEEEEEe--CCcEEEe
Confidence 348999999998877643211111112222223 567765 3332110 01235789998 4555544
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=92.51 E-value=5.8 Score=39.28 Aligned_cols=109 Identities=15% Similarity=0.119 Sum_probs=56.6
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCc----EEEecCCCCCCCceeeEEEEE-CCE-EEEEeCccCC
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE----WKVISSPNSPPPRSAHQAVSW-KNY-LYIFGGEFTS 146 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~----W~~l~s~~~P~pRs~ha~~~~-~~~-iyvfGG~~~~ 146 (643)
++...| ++.+++.|+. -+.+.+|++.+.. ...+.. ....-.+++.. ++. +++.|+..
T Consensus 16 ~~~~s~--~~~~l~~~~~---------d~~v~iw~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d-- 78 (342)
T 1yfq_A 16 DIKIIP--SKSLLLITSW---------DGSLTVYKFDIQAKNVDLLQSLR----YKHPLLCCNFIDNTDLQIYVGTVQ-- 78 (342)
T ss_dssp EEEEEG--GGTEEEEEET---------TSEEEEEEEETTTTEEEEEEEEE----CSSCEEEEEEEESSSEEEEEEETT--
T ss_pred EEEEcC--CCCEEEEEcC---------CCeEEEEEeCCCCccccceeeee----cCCceEEEEECCCCCcEEEEEcCC--
Confidence 444555 5667777762 1467788877765 333321 11122223332 556 66667642
Q ss_pred CCCCcceecCeEEEEEC-CCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCC
Q 006473 147 PNQERFHHYKDFWMLDL-KTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (643)
Q Consensus 147 ~~~~~~~~~~dv~~yD~-~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t 218 (643)
..+.+||+ .+.....+... +....-.+++...+.+++.|+.+ ..+.+||+.+
T Consensus 79 ---------g~i~~wd~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~l~s~~~d---------~~i~iwd~~~ 131 (342)
T 1yfq_A 79 ---------GEILKVDLIGSPSFQALTNN--EANLGICRICKYGDDKLIAASWD---------GLIEVIDPRN 131 (342)
T ss_dssp ---------SCEEEECSSSSSSEEECBSC--CCCSCEEEEEEETTTEEEEEETT---------SEEEEECHHH
T ss_pred ---------CeEEEEEeccCCceEecccc--CCCCceEEEEeCCCCEEEEEcCC---------CeEEEEcccc
Confidence 45888998 88776554321 01122223333335555666642 3577777654
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=92.43 E-value=10 Score=38.39 Aligned_cols=69 Identities=9% Similarity=0.020 Sum_probs=36.2
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCC-C-CCCceeEEEEE--CCEEEEEeeeecCCCceeeec
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-P-SPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYN 209 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~-P-~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~ 209 (643)
++ +++.|+.. ..+.+||+.+......-.... + .....-.++.+ ++.+++.|+.++. ..
T Consensus 197 ~~-~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~------~g 258 (397)
T 1sq9_A 197 RG-LIATGFNN-----------GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS------FG 258 (397)
T ss_dssp TS-EEEEECTT-----------SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETT------EE
T ss_pred Cc-eEEEEeCC-----------CcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCC------Cc
Confidence 45 66776642 468899998776443222000 1 00112223333 5566667765311 24
Q ss_pred cEEEEEcCCCc
Q 006473 210 DLYVFDLDQFK 220 (643)
Q Consensus 210 dv~~yD~~t~~ 220 (643)
.+.+||+.+.+
T Consensus 259 ~i~i~d~~~~~ 269 (397)
T 1sq9_A 259 CITLYETEFGE 269 (397)
T ss_dssp EEEEEETTTCC
T ss_pred eEEEEECCCCc
Confidence 68899987764
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=92.41 E-value=4.7 Score=41.66 Aligned_cols=111 Identities=15% Similarity=0.169 Sum_probs=60.6
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCc
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~ 151 (643)
++++.| ++.+++.|+. + +.+.+||+.+.+-...-... ...-.+++.. ++..++.|+..
T Consensus 128 ~v~~s~--dg~~l~s~~~--d-------~~i~iwd~~~~~~~~~~~~h---~~~v~~~~~~p~~~~l~s~s~d------- 186 (393)
T 1erj_A 128 SVCFSP--DGKFLATGAE--D-------RLIRIWDIENRKIVMILQGH---EQDIYSLDYFPSGDKLVSGSGD------- 186 (393)
T ss_dssp EEEECT--TSSEEEEEET--T-------SCEEEEETTTTEEEEEECCC---SSCEEEEEECTTSSEEEEEETT-------
T ss_pred EEEECC--CCCEEEEEcC--C-------CeEEEEECCCCcEEEEEccC---CCCEEEEEEcCCCCEEEEecCC-------
Confidence 444555 6777777773 2 46888999887654432221 1112223332 44555666542
Q ss_pred ceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCce
Q 006473 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W 221 (643)
..+.+||+.+........ .. ..-.+++.. ++.+++.|+.+ ..+.+||+.+..-
T Consensus 187 ----~~v~iwd~~~~~~~~~~~--~~--~~v~~~~~~~~~~~~l~~~s~d---------~~v~iwd~~~~~~ 241 (393)
T 1erj_A 187 ----RTVRIWDLRTGQCSLTLS--IE--DGVTTVAVSPGDGKYIAAGSLD---------RAVRVWDSETGFL 241 (393)
T ss_dssp ----SEEEEEETTTTEEEEEEE--CS--SCEEEEEECSTTCCEEEEEETT---------SCEEEEETTTCCE
T ss_pred ----CcEEEEECCCCeeEEEEE--cC--CCcEEEEEECCCCCEEEEEcCC---------CcEEEEECCCCcE
Confidence 457788998876543322 11 111222222 56677777753 3578888877653
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=92.37 E-value=4.4 Score=40.18 Aligned_cols=151 Identities=8% Similarity=-0.026 Sum_probs=71.8
Q ss_pred ccEEEEECCCCcEEEecCCC--CCCCceeeEEEEECCEEEEEeCccCCCCC-CcceecCeEEEEECCCCcEEEeccCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPN--SPPPRSAHQAVSWKNYLYIFGGEFTSPNQ-ERFHHYKDFWMLDLKTNQWEQLNLKGCP 177 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~--~P~pRs~ha~~~~~~~iyvfGG~~~~~~~-~~~~~~~dv~~yD~~t~~W~~~~~~g~P 177 (643)
+.|++||+.+++++.+.... .|..|....++.-++.||+.. ....... ........+|+|++. .....+... ..
T Consensus 73 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~-~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~-~~ 149 (297)
T 3g4e_A 73 TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGT-MAEETAPAVLERHQGALYSLFPD-HHVKKYFDQ-VD 149 (297)
T ss_dssp TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEE-EECCSBTTBCCTTCEEEEEECTT-SCEEEEEEE-ES
T ss_pred CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEec-CCcccccccccCCCcEEEEEECC-CCEEEEeec-cc
Confidence 36899999999988775432 122222222222256777643 1111000 000012468899875 333333220 11
Q ss_pred CCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEc--CCCceEEe---ccCCCCCCCCCccceeEEEe-CCEEE
Q 006473 178 SPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDL--DQFKWQEI---KPRFGSMWPSPRSGFQFFVY-QDEVF 249 (643)
Q Consensus 178 ~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~--~t~~W~~v---~~~~~~~~P~~R~~~s~~~~-~~~iy 249 (643)
....++.. ++.||+.... .+.|++|++ .+...... ...+ .....-.++++. ++.||
T Consensus 150 ---~pngi~~spdg~~lyv~~~~---------~~~i~~~~~d~~~G~~~~~~~~~~~~----~~~~~p~g~~~d~~G~lw 213 (297)
T 3g4e_A 150 ---ISNGLDWSLDHKIFYYIDSL---------SYSVDAFDYDLQTGQISNRRSVYKLE----KEEQIPDGMCIDAEGKLW 213 (297)
T ss_dssp ---BEEEEEECTTSCEEEEEEGG---------GTEEEEEEECTTTCCEEEEEEEEECC----GGGCEEEEEEEBTTSCEE
T ss_pred ---cccceEEcCCCCEEEEecCC---------CCcEEEEeccCCCCcccCcEEEEECC----CCCCCCCeeEECCCCCEE
Confidence 11233333 4468776542 356888876 45443221 1110 001111234443 67788
Q ss_pred EEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEE
Q 006473 250 LYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (643)
Q Consensus 250 v~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (643)
|...... .+++||+.+.+...
T Consensus 214 va~~~~~----------------~v~~~d~~tG~~~~ 234 (297)
T 3g4e_A 214 VACYNGG----------------RVIRLDPVTGKRLQ 234 (297)
T ss_dssp EEEETTT----------------EEEEECTTTCCEEE
T ss_pred EEEcCCC----------------EEEEEcCCCceEEE
Confidence 7643222 38899998665443
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=92.33 E-value=5.2 Score=40.73 Aligned_cols=136 Identities=14% Similarity=0.014 Sum_probs=70.2
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeEEEE-E--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL-Y--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~-~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~ 232 (643)
..+.+||+.+.+....-. ...... .++.+ . ++.+++.|+.+ ..+.+||+.+.+....-..
T Consensus 176 ~~v~lwd~~~~~~~~~~~--~h~~~v-~~~~~~~~~~g~~l~sgs~D---------g~v~~wd~~~~~~~~~~~~----- 238 (354)
T 2pbi_B 176 GTCALWDVESGQLLQSFH--GHGADV-LCLDLAPSETGNTFVSGGCD---------KKAMVWDMRSGQCVQAFET----- 238 (354)
T ss_dssp SEEEEEETTTCCEEEEEE--CCSSCE-EEEEECCCSSCCEEEEEETT---------SCEEEEETTTCCEEEEECC-----
T ss_pred CcEEEEeCCCCeEEEEEc--CCCCCe-EEEEEEeCCCCCEEEEEeCC---------CeEEEEECCCCcEEEEecC-----
Confidence 457788988776433211 111111 11112 1 34677777753 4588899887764332211
Q ss_pred CCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEE-EEE-CCeE
Q 006473 233 PSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSM-CVH-KKRA 309 (643)
Q Consensus 233 P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~-~~~-~~~i 309 (643)
....-.+++.. ++.+++.|+.++. +.+||+.+..-..+-.. .....+.+. ++. ++.+
T Consensus 239 -h~~~v~~v~~~p~~~~l~s~s~D~~----------------v~lwd~~~~~~~~~~~~---~~~~~~~~~~~~s~~g~~ 298 (354)
T 2pbi_B 239 -HESDVNSVRYYPSGDAFASGSDDAT----------------CRLYDLRADREVAIYSK---ESIIFGASSVDFSLSGRL 298 (354)
T ss_dssp -CSSCEEEEEECTTSSEEEEEETTSC----------------EEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSSE
T ss_pred -CCCCeEEEEEeCCCCEEEEEeCCCe----------------EEEEECCCCcEEEEEcC---CCcccceeEEEEeCCCCE
Confidence 11111122222 5667788887665 77888876643322211 112223333 333 5677
Q ss_pred EEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 310 yvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
++.|+.. +.|.+||+.+..
T Consensus 299 l~~g~~d--------------~~i~vwd~~~~~ 317 (354)
T 2pbi_B 299 LFAGYND--------------YTINVWDVLKGS 317 (354)
T ss_dssp EEEEETT--------------SCEEEEETTTCS
T ss_pred EEEEECC--------------CcEEEEECCCCc
Confidence 7777643 358999987654
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=92.25 E-value=8.7 Score=37.14 Aligned_cols=198 Identities=10% Similarity=-0.042 Sum_probs=107.6
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCC
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~ 149 (643)
+.+++.+. ++.||+.-. + .+.+++|++....-..+.... . ..-+.+++. ++.||+.-..
T Consensus 39 ~gi~~d~~-~~~ly~~d~----~-----~~~I~~~~~~g~~~~~~~~~~--~-~~p~~ia~d~~~~~lyv~d~~------ 99 (267)
T 1npe_A 39 IGLAFDCV-DKVVYWTDI----S-----EPSIGRASLHGGEPTTIIRQD--L-GSPEGIALDHLGRTIFWTDSQ------ 99 (267)
T ss_dssp EEEEEETT-TTEEEEEET----T-----TTEEEEEESSSCCCEEEECTT--C-CCEEEEEEETTTTEEEEEETT------
T ss_pred EEEEEecC-CCEEEEEEC----C-----CCEEEEEecCCCCcEEEEECC--C-CCccEEEEEecCCeEEEEECC------
Confidence 45555543 467887654 1 257899999876544433221 1 122444443 6799998642
Q ss_pred CcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccC
Q 006473 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (643)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (643)
.+.++++++....-..+...+. ..-..+++. +++||+..... ..+.++++++....-..+...
T Consensus 100 -----~~~I~~~~~~g~~~~~~~~~~~---~~P~~i~vd~~~g~lyv~~~~~-------~~~~I~~~~~dg~~~~~~~~~ 164 (267)
T 1npe_A 100 -----LDRIEVAKMDGTQRRVLFDTGL---VNPRGIVTDPVRGNLYWTDWNR-------DNPKIETSHMDGTNRRILAQD 164 (267)
T ss_dssp -----TTEEEEEETTSCSCEEEECSSC---SSEEEEEEETTTTEEEEEECCS-------SSCEEEEEETTSCCCEEEECT
T ss_pred -----CCEEEEEEcCCCCEEEEEECCC---CCccEEEEeeCCCEEEEEECCC-------CCcEEEEEecCCCCcEEEEEC
Confidence 2568899987554333322111 112344444 68899874321 024688888765433333221
Q ss_pred CCCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE
Q 006473 228 FGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (643)
Q Consensus 228 ~~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~ 305 (643)
.. ..-..+++. ++.||+.-... +.++++++....-..+...+. .| +++++.
T Consensus 165 -----~~-~~P~gia~d~~~~~lyv~d~~~----------------~~I~~~~~~g~~~~~~~~~~~--~P---~gi~~d 217 (267)
T 1npe_A 165 -----NL-GLPNGLTFDAFSSQLCWVDAGT----------------HRAECLNPAQPGRRKVLEGLQ--YP---FAVTSY 217 (267)
T ss_dssp -----TC-SCEEEEEEETTTTEEEEEETTT----------------TEEEEEETTEEEEEEEEECCC--SE---EEEEEE
T ss_pred -----CC-CCCcEEEEcCCCCEEEEEECCC----------------CEEEEEecCCCceEEEecCCC--Cc---eEEEEe
Confidence 11 112233443 57888875433 348888887543322222111 12 356667
Q ss_pred CCeEEEeccccccccCccccccccCCcEEEEECCCCcEE
Q 006473 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (643)
Q Consensus 306 ~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (643)
++.||+.-.. .+.|++||+.+.+-.
T Consensus 218 ~~~lyva~~~--------------~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 218 GKNLYYTDWK--------------TNSVIAMDLAISKEM 242 (267)
T ss_dssp TTEEEEEETT--------------TTEEEEEETTTTEEE
T ss_pred CCEEEEEECC--------------CCeEEEEeCCCCCce
Confidence 8889986432 356999999876543
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.22 E-value=4.9 Score=40.37 Aligned_cols=158 Identities=9% Similarity=0.113 Sum_probs=77.9
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCC--CcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeec
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT--NQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYN 209 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t--~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~ 209 (643)
++.+++.|+.. ..+.+||+.. ..+..+.. +..-...-.++.+ ++.+++.|+.+ .
T Consensus 118 ~g~~las~s~D-----------~~v~iwd~~~~~~~~~~~~~--~~~h~~~v~~v~~~p~~~~l~s~s~D---------~ 175 (330)
T 2hes_X 118 DGYYLATCSRD-----------KSVWIWETDESGEEYECISV--LQEHSQDVKHVIWHPSEALLASSSYD---------D 175 (330)
T ss_dssp TSCEEEEEETT-----------SCEEEEECCTTCCCCEEEEE--ECCCSSCEEEEEECSSSSEEEEEETT---------S
T ss_pred CCCEEEEEeCC-----------CEEEEEeccCCCCCeEEEEE--eccCCCceEEEEECCCCCEEEEEcCC---------C
Confidence 45666677643 3467778732 23443322 1111111222333 45666777753 3
Q ss_pred cEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-C--CEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCC------
Q 006473 210 DLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-Q--DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR------ 280 (643)
Q Consensus 210 dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~--~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~------ 280 (643)
.+.+||..+..|..+..... ....-.++... + +.+++.|+.++. +.+||+.
T Consensus 176 ~i~iW~~~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~~l~s~s~D~~----------------v~iw~~~~~~~~~ 235 (330)
T 2hes_X 176 TVRIWKDYDDDWECVAVLNG----HEGTVWSSDFDKTEGVFRLCSGSDDST----------------VRVWKYMGDDEDD 235 (330)
T ss_dssp CEEEEEEETTEEEEEEEECC----CSSCEEEEEECCSSSSCEEEEEETTSC----------------EEEEEEEEECTTS
T ss_pred eEEEEECCCCCeeEEEEccC----CCCcEEEEEecCCCCeeEEEEEeCCCe----------------EEEEEecCCCccc
Confidence 46677777776766654421 11111122222 2 345667776654 3334332
Q ss_pred CCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 281 TWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 281 t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
...|..+..... .....-.+++...+.+++.||.. +.|.+||+.+..|..+..
T Consensus 236 ~~~~~~~~~~~~-~h~~~v~~v~~s~~~~l~s~~~d--------------g~v~iw~~~~~~~~~~~~ 288 (330)
T 2hes_X 236 QQEWVCEAILPD-VHKRQVYNVAWGFNGLIASVGAD--------------GVLAVYEEVDGEWKVFAK 288 (330)
T ss_dssp CEEEEEEEECCS-CCSSCEEEEEECTTSCEEEEETT--------------SCEEEEEEETTEEEEEEE
T ss_pred cceeEEeeeccc-ccccceEEEEEcCCCEEEEEeCC--------------CEEEEEEcCCCceEEEec
Confidence 234555443211 01222334444455566777653 348889988888876544
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=92.21 E-value=1.4 Score=46.56 Aligned_cols=53 Identities=9% Similarity=0.063 Sum_probs=28.5
Q ss_pred cEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCC
Q 006473 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN 166 (643)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~ 166 (643)
.|.+||+.++....+..... ......++... ++.+++.|+.. ..+.+||+...
T Consensus 188 ~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~g~~d-----------g~i~~wd~~~~ 241 (435)
T 4e54_B 188 TTRLQDFKGNILRVFASSDT-INIWFCSLDVSASSRMVVTGDNV-----------GNVILLNMDGK 241 (435)
T ss_dssp CEEEEETTSCEEEEEECCSS-CSCCCCCEEEETTTTEEEEECSS-----------SBEEEEESSSC
T ss_pred EEEEeeccCCceeEEeccCC-CCccEEEEEECCCCCEEEEEeCC-----------CcEeeeccCcc
Confidence 46677777766655543321 11112222232 56677777753 35778887654
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=92.18 E-value=6.2 Score=41.13 Aligned_cols=64 Identities=16% Similarity=0.043 Sum_probs=34.4
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccE
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv 211 (643)
++..++.|+.. ..+.+||+.+......-. + . .....++.+ ++.+++.|+.+ ..+
T Consensus 203 ~~~~l~s~s~D-----------~~i~~wd~~~~~~~~~~~-~-h--~~~v~~~~~~~~g~~l~s~s~D---------~~v 258 (410)
T 1vyh_C 203 NGDHIVSASRD-----------KTIKMWEVQTGYCVKTFT-G-H--REWVRMVRPNQDGTLIASCSND---------QTV 258 (410)
T ss_dssp SSSEEEEEETT-----------SEEEEEETTTCCEEEEEE-C-C--SSCEEEEEECTTSSEEEEEETT---------SCE
T ss_pred CCCEEEEEeCC-----------CeEEEEECCCCcEEEEEe-C-C--CccEEEEEECCCCCEEEEEcCC---------CeE
Confidence 45566666642 457888988776432211 1 1 111122223 45667777643 357
Q ss_pred EEEEcCCCce
Q 006473 212 YVFDLDQFKW 221 (643)
Q Consensus 212 ~~yD~~t~~W 221 (643)
.+||+.+...
T Consensus 259 ~vwd~~~~~~ 268 (410)
T 1vyh_C 259 RVWVVATKEC 268 (410)
T ss_dssp EEEETTTCCE
T ss_pred EEEECCCCce
Confidence 7778776554
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=91.93 E-value=8.2 Score=42.71 Aligned_cols=106 Identities=12% Similarity=0.099 Sum_probs=60.6
Q ss_pred eccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeE
Q 006473 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (643)
Q Consensus 208 ~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (643)
...+++.|........+... +.++.-|.+... +..+|+.... .+.+.++|+.+.+-.
T Consensus 319 ~g~v~~vd~~~~~~~~v~~i-----~~~~~~~d~~~~pdgr~~~va~~~----------------sn~V~ViD~~t~kl~ 377 (567)
T 1qks_A 319 TGKILLVDYTDLNNLKTTEI-----SAERFLHDGGLDGSHRYFITAANA----------------RNKLVVIDTKEGKLV 377 (567)
T ss_dssp TTEEEEEETTCSSEEEEEEE-----ECCSSEEEEEECTTSCEEEEEEGG----------------GTEEEEEETTTTEEE
T ss_pred CCeEEEEecCCCccceeeee-----eccccccCceECCCCCEEEEEeCC----------------CCeEEEEECCCCcEE
Confidence 46788888877665555444 344444544444 3344443322 245888999988755
Q ss_pred EeccC-CCCCCCceeeEEEEE--CCeEEEeccccccccCccccccccCCcEEEEECCCCc-----EEEeEe
Q 006473 286 KVKKI-GMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR-----WYPLEL 348 (643)
Q Consensus 286 ~l~~~-g~~P~~R~g~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~-----W~~l~~ 348 (643)
..-.. +..|.+..|... ++ .+.+|+.+-.. .+.|.++|+.+.. |..+..
T Consensus 378 ~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g-------------~~~Vsvid~~~~~~~~~~~kvv~~ 434 (567)
T 1qks_A 378 AIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMG-------------DDSVALIGTDPEGHPDNAWKILDS 434 (567)
T ss_dssp EEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSS-------------SSEEEEEECCTTTCTTTBTSEEEE
T ss_pred EEEeccCcCCCCccceee-ECCCCCcEEEeCCCC-------------CCeEEEecCCCCCCccccCEEEEE
Confidence 54444 455665445443 34 35676655321 2458888887632 776654
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=91.86 E-value=7 Score=40.56 Aligned_cols=194 Identities=8% Similarity=0.081 Sum_probs=101.5
Q ss_pred cEEEEECCC--CcEEEecCCCCCCCceeeEEEEE---CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCC-
Q 006473 102 DLYRYDVEK--QEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG- 175 (643)
Q Consensus 102 dv~~yd~~~--~~W~~l~s~~~P~pRs~ha~~~~---~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g- 175 (643)
-+++|+... .+|..+... +....-++++.. .+.||+.+.... .-.-|++.+-...+|+.+....
T Consensus 32 Gl~~~~~~~~g~~W~~~~~~--~~~~~v~~i~~dp~~~~~l~~g~~~g~--------~g~gl~~s~D~G~tW~~~~~~~~ 101 (394)
T 3b7f_A 32 GAWFLASDPARRTWELRGPV--FLGHTIHHIVQDPREPERMLMAARTGH--------LGPTVFRSDDGGGNWTEATRPPA 101 (394)
T ss_dssp EEEEEEECTTSCSEEEEEEE--STTSEEEEEEECSSSTTCEEEEEEC----------CCEEEEEESSTTSCCEECSBCCC
T ss_pred ceEEEECCCCCCCceECCcc--CCCCceEEEEECCCCCCeEEEEecCCC--------CCccEEEeCCCCCCceECCcccc
Confidence 367777655 689976421 122334555544 467887653210 0024777766678999886421
Q ss_pred CCCC--C-----cee--EEEEE----CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCC-----------
Q 006473 176 CPSP--R-----SGH--RMVLY----KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSM----------- 231 (643)
Q Consensus 176 ~P~~--R-----s~h--~~~~~----~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~----------- 231 (643)
.+.. + ..+ ++++. .+.||+.+. ...|++.+-...+|+.+.......
T Consensus 102 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~----------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~ 171 (394)
T 3b7f_A 102 FNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS----------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQD 171 (394)
T ss_dssp CCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE----------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC--
T ss_pred CCCcccccccccccceeEEEeCCCCCCCEEEEEec----------CCcEEEEcCCCCCeEECcCccCCcccccccccccc
Confidence 1211 1 112 23332 466776432 235777777778899886421000
Q ss_pred -CCCCccceeEEEe---CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCC---CCCCC-----cee
Q 006473 232 -WPSPRSGFQFFVY---QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG---MPPGP-----RAG 299 (643)
Q Consensus 232 -~P~~R~~~s~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g---~~P~~-----R~g 299 (643)
.+....-+++++. .+.|||..+. .-+++.+-...+|+.+.... ..|.+ ...
T Consensus 172 g~~~~~~i~~i~~d~~~~~~l~vg~~~-----------------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~ 234 (394)
T 3b7f_A 172 GTPDGPKMHSILVDPRDPKHLYIGMSS-----------------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDP 234 (394)
T ss_dssp --CCCCEEEEEEECTTCTTCEEEEEET-----------------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCE
T ss_pred CCCCCCceeEEEECCCCCCEEEEEECC-----------------CCEEEECCCCCCceECCCCccccccCCCccccCcce
Confidence 0111122344433 3456664321 12677777788999885311 11211 234
Q ss_pred eEEEEEC---CeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 300 FSMCVHK---KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 300 ~s~~~~~---~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
+++++.. +.||+ |.. ..||+++-...+|..+..
T Consensus 235 ~~i~~~~~~~~~l~v-g~~---------------~gl~~s~D~G~tW~~~~~ 270 (394)
T 3b7f_A 235 HCVVQHPAAPDILYQ-QNH---------------CGIYRMDRREGVWKRIGD 270 (394)
T ss_dssp EEEEECSSSTTEEEE-EET---------------TEEEEEETTTTEEECGGG
T ss_pred eEEEECCCCCCEEEE-EcC---------------CeEEEeCCCCCcceECCC
Confidence 5555542 55665 321 238888878889988753
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=91.73 E-value=0.7 Score=47.20 Aligned_cols=113 Identities=14% Similarity=0.202 Sum_probs=47.7
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCc-EEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCC
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE-WKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~-W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~ 149 (643)
++...| ++.+++.|+. + +.+.+||+.+.. |..+.... .... ....+.+ ++.+++.|+..
T Consensus 60 ~~~~s~--~~~~l~s~s~--d-------~~v~vwd~~~~~~~~~~~~~~-~~~~-~v~~~~~~~~~~~l~~~~~d----- 121 (377)
T 3dwl_C 60 CVDWAP--KSNRIVTCSQ--D-------RNAYVYEKRPDGTWKQTLVLL-RLNR-AATFVRWSPNEDKFAVGSGA----- 121 (377)
T ss_dssp EEEECT--TTCCEEEEET--T-------SSEEEC------CCCCEEECC-CCSS-CEEEEECCTTSSCCEEEESS-----
T ss_pred EEEEeC--CCCEEEEEeC--C-------CeEEEEEcCCCCceeeeeEec-ccCC-ceEEEEECCCCCEEEEEecC-----
Confidence 344444 5667777772 2 367888888776 44332211 0111 1222223 45666666642
Q ss_pred CcceecCeEEEEECCCCc-EEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCC
Q 006473 150 ERFHHYKDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (643)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~-W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t 218 (643)
..+.+||+.+.. |..+.....+....-.+++.. ++.+++.|+.+ ..+.+||+.+
T Consensus 122 ------~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~ 177 (377)
T 3dwl_C 122 ------RVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD---------RKAYVLSAYV 177 (377)
T ss_dssp ------SCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS---------SCEEEEEECC
T ss_pred ------CeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC---------CEEEEEEEEe
Confidence 346677776654 322222111112222222222 45667777653 3577777754
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=91.73 E-value=3.6 Score=41.05 Aligned_cols=99 Identities=11% Similarity=0.035 Sum_probs=51.2
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (643)
+.|++||+.+.....+.... +....-..++.. ++.||+........ .....+|+||+.+.+...+... ..
T Consensus 112 ~~i~~~d~~~~~~~~~~~~~-~~~~~~~~i~~d~~g~l~v~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~-~~-- 182 (333)
T 2dg1_A 112 GGIFAATENGDNLQDIIEDL-STAYCIDDMVFDSKGGFYFTDFRGYST-----NPLGGVYYVSPDFRTVTPIIQN-IS-- 182 (333)
T ss_dssp CEEEEECTTSCSCEEEECSS-SSCCCEEEEEECTTSCEEEEECCCBTT-----BCCEEEEEECTTSCCEEEEEEE-ES--
T ss_pred ceEEEEeCCCCEEEEEEccC-ccCCcccceEECCCCCEEEEecccccc-----CCCceEEEEeCCCCEEEEeecC-CC--
Confidence 46899999888765332211 111222223333 57788765321110 0135799999987776655321 11
Q ss_pred CceeEEEEE-C-CEEEEEeeeecCCCceeeeccEEEEEcCC
Q 006473 180 RSGHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (643)
Q Consensus 180 Rs~h~~~~~-~-~~lyvfGG~~~~~~~~~~~~dv~~yD~~t 218 (643)
..+.++.. + +.||+.... .+.|++||+.+
T Consensus 183 -~~~~i~~~~dg~~l~v~~~~---------~~~i~~~d~~~ 213 (333)
T 2dg1_A 183 -VANGIALSTDEKVLWVTETT---------ANRLHRIALED 213 (333)
T ss_dssp -SEEEEEECTTSSEEEEEEGG---------GTEEEEEEECT
T ss_pred -cccceEECCCCCEEEEEeCC---------CCeEEEEEecC
Confidence 11223332 3 357775431 35688998854
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=91.71 E-value=2.5 Score=41.84 Aligned_cols=111 Identities=9% Similarity=0.138 Sum_probs=54.3
Q ss_pred EEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE----CCEEEEEeCccCCCCC
Q 006473 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW----KNYLYIFGGEFTSPNQ 149 (643)
Q Consensus 74 ~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~----~~~iyvfGG~~~~~~~ 149 (643)
+++.| ++++++.|+. + +.+.+|++.....+.+..... ... ....+.+ .+.+++.|+..
T Consensus 15 ~~~s~--~g~~las~s~--D-------~~v~iw~~~~~~~~~~~~l~g-H~~-~V~~v~~s~~~~g~~l~s~s~D----- 76 (297)
T 2pm7_B 15 AVMDY--YGKRMATCSS--D-------KTIKIFEVEGETHKLIDTLTG-HEG-PVWRVDWAHPKFGTILASCSYD----- 76 (297)
T ss_dssp EEECT--TSSEEEEEET--T-------SCEEEEEBCSSCBCCCEEECC-CSS-CEEEEEECCGGGCSEEEEEETT-----
T ss_pred EEECC--CCCEEEEEeC--C-------CEEEEEecCCCCcEEEEEEcc-ccC-CeEEEEecCCCcCCEEEEEcCC-----
Confidence 34444 5777888872 2 357788876543221111100 011 1122222 15677777643
Q ss_pred CcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEEC----CEEEEEeeeecCCCceeeeccEEEEEcCCC
Q 006473 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYK----HKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (643)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~----~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~ 219 (643)
..+.++|+.+..|..+... ......-.++.+. +.+++.|+.+ ..+.+||+.+.
T Consensus 77 ------~~v~iWd~~~~~~~~~~~~--~~h~~~v~~v~~~p~~~g~~l~s~s~d---------~~v~~wd~~~~ 133 (297)
T 2pm7_B 77 ------GKVMIWKEENGRWSQIAVH--AVHSASVNSVQWAPHEYGPMLLVASSD---------GKVSVVEFKEN 133 (297)
T ss_dssp ------TEEEEEEBSSSCBCCCEEE--CCCSSCEEEEEECCGGGCSEEEEEETT---------SEEEEEEBCSS
T ss_pred ------CEEEEEEcCCCceEEEEEe--ecCCCceeEEEeCcCCCCcEEEEEECC---------CcEEEEEecCC
Confidence 3577888887776544321 1111112233331 4566666642 35667777654
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.70 E-value=7.3 Score=43.69 Aligned_cols=94 Identities=12% Similarity=0.092 Sum_probs=49.9
Q ss_pred ccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEe
Q 006473 209 NDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (643)
Q Consensus 209 ~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l 287 (643)
..|.+||+.+.+-...-.. ....-.+++.. ++.+++.||.++. +.++|+.+.+-...
T Consensus 541 ~~v~vwd~~~~~~~~~~~~------h~~~v~~v~~spdg~~l~sg~~Dg~----------------i~iwd~~~~~~~~~ 598 (694)
T 3dm0_A 541 KTVKVWNLSNCKLRSTLAG------HTGYVSTVAVSPDGSLCASGGKDGV----------------VLLWDLAEGKKLYS 598 (694)
T ss_dssp SCEEEEETTTCCEEEEECC------CSSCEEEEEECTTSSEEEEEETTSB----------------CEEEETTTTEEEEC
T ss_pred CeEEEEECCCCcEEEEEcC------CCCCEEEEEEeCCCCEEEEEeCCCe----------------EEEEECCCCceEEE
Confidence 4578888877653322111 11111222333 6778888887765 66788776643221
Q ss_pred ccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcE
Q 006473 288 KKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (643)
Q Consensus 288 ~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (643)
. .....-+++++..+..++++|.. +.|.+||+.+..-
T Consensus 599 --~---~~~~~v~~~~~sp~~~~l~~~~~--------------~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 599 --L---EANSVIHALCFSPNRYWLCAATE--------------HGIKIWDLESKSI 635 (694)
T ss_dssp --C---BCSSCEEEEEECSSSSEEEEEET--------------TEEEEEETTTTEE
T ss_pred --e---cCCCcEEEEEEcCCCcEEEEEcC--------------CCEEEEECCCCCC
Confidence 1 11222345555544445555432 3489999987643
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.66 E-value=7.3 Score=37.76 Aligned_cols=186 Identities=8% Similarity=0.031 Sum_probs=85.8
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~ 159 (643)
++.+++.|+. -+.+.+||+.+..-....... ...-.+++.. ++.+++.|+.. ..+.
T Consensus 28 ~~~~l~s~~~---------dg~v~vw~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d-----------g~i~ 84 (313)
T 3odt_A 28 DDSKVASVSR---------DGTVRLWSKDDQWLGTVVYTG---QGFLNSVCYDSEKELLLFGGKD-----------TMIN 84 (313)
T ss_dssp ETTEEEEEET---------TSEEEEEEESSSEEEEEEEEC---SSCEEEEEEETTTTEEEEEETT-----------SCEE
T ss_pred CCCEEEEEEc---------CCcEEEEECCCCEEEEEeecC---CccEEEEEECCCCCEEEEecCC-----------CeEE
Confidence 4566777772 246888898776544332211 1112222233 56666777643 2355
Q ss_pred EEECCCCc-EEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccc
Q 006473 160 MLDLKTNQ-WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG 238 (643)
Q Consensus 160 ~yD~~t~~-W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~ 238 (643)
.|++.... ...+.. .......-.++.+++.+++.|+.+ ..+.+||.....+.. ... ..+...
T Consensus 85 ~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~l~~~~~d---------~~i~~~d~~~~~~~~-~~~-----~~~v~~ 147 (313)
T 3odt_A 85 GVPLFATSGEDPLYT--LIGHQGNVCSLSFQDGVVISGSWD---------KTAKVWKEGSLVYNL-QAH-----NASVWD 147 (313)
T ss_dssp EEETTCCTTSCC-CE--ECCCSSCEEEEEEETTEEEEEETT---------SEEEEEETTEEEEEE-ECC-----SSCEEE
T ss_pred EEEeeecCCCCcccc--hhhcccCEEEEEecCCEEEEEeCC---------CCEEEEcCCcEEEec-ccC-----CCceeE
Confidence 66654421 111111 111112222333455566666642 356777732221111 111 122222
Q ss_pred eeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccc
Q 006473 239 FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVD 317 (643)
Q Consensus 239 ~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~ 317 (643)
..+...++.+++.|+.++. +.+||..... ..+.. +....-.++++. ++. ++.|+..
T Consensus 148 ~~~~~~~~~~l~~~~~d~~----------------i~i~d~~~~~-~~~~~----~~~~~i~~~~~~~~~~-~~~~~~d- 204 (313)
T 3odt_A 148 AKVVSFSENKFLTASADKT----------------IKLWQNDKVI-KTFSG----IHNDVVRHLAVVDDGH-FISCSND- 204 (313)
T ss_dssp EEEEETTTTEEEEEETTSC----------------EEEEETTEEE-EEECS----SCSSCEEEEEEEETTE-EEEEETT-
T ss_pred EEEccCCCCEEEEEECCCC----------------EEEEecCceE-EEEec----cCcccEEEEEEcCCCe-EEEccCC-
Confidence 2223326667777777655 6677733221 11111 112222334443 566 6666643
Q ss_pred cccCccccccccCCcEEEEECCCCc
Q 006473 318 MEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 318 ~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
..|.+||+.+.+
T Consensus 205 -------------g~i~i~d~~~~~ 216 (313)
T 3odt_A 205 -------------GLIKLVDMHTGD 216 (313)
T ss_dssp -------------SEEEEEETTTCC
T ss_pred -------------CeEEEEECCchh
Confidence 358999988654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=91.60 E-value=7.4 Score=43.81 Aligned_cols=200 Identities=12% Similarity=0.094 Sum_probs=100.0
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCC--CCcceecCeEEEEECCCCcE--EEeccC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPN--QERFHHYKDFWMLDLKTNQW--EQLNLK 174 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~--~~~~~~~~dv~~yD~~t~~W--~~~~~~ 174 (643)
..|+++|+.+++... ....+... +..+++ +++.++++....... .........+|++++.+..- ..+..
T Consensus 147 ~~i~v~dl~tg~~~~--~~~~~~~~--~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~- 221 (695)
T 2bkl_A 147 AVLHVIDVDSGEWSK--VDVIEGGK--YATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE- 221 (695)
T ss_dssp CEEEEEETTTCCBCS--SCCBSCCT--TCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC-
T ss_pred EEEEEEECCCCCCcC--CcccCccc--ccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe-
Confidence 479999999887531 11111111 122233 455555554322100 00011346799999988763 22222
Q ss_pred CCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEc
Q 006473 175 GCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYG 252 (643)
Q Consensus 175 g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~G 252 (643)
.+........+.+ +++.++++..... ..+.+|+++..+..|..+... .... ...+..++.||+..
T Consensus 222 -~~~~~~~~~~~~~SpDG~~l~~~~~~~~-----~~~~l~~~~~~~~~~~~l~~~-----~~~~--~~~~~~~g~l~~~s 288 (695)
T 2bkl_A 222 -RTGDPTTFLQSDLSRDGKYLFVYILRGW-----SENDVYWKRPGEKDFRLLVKG-----VGAK--YEVHAWKDRFYVLT 288 (695)
T ss_dssp -CCCCTTCEEEEEECTTSCCEEEEEEETT-----TEEEEEEECTTCSSCEEEEEC-----SSCC--EEEEEETTEEEEEE
T ss_pred -cCCCCEEEEEEEECCCCCEEEEEEeCCC-----CceEEEEEcCCCCceEEeecC-----CCce--EEEEecCCcEEEEE
Confidence 1221111222333 4454455443321 246788888877788888654 1111 12222455566664
Q ss_pred CCCCCCCCccCCCCCCceeeeEEEEeCCCCe---eEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCcccccccc
Q 006473 253 GYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE---WSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLF 329 (643)
Q Consensus 253 G~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~---W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~ 329 (643)
.... ....++++|+.+.. |..+.... + ...-.++++.++++++......
T Consensus 289 ~~~~-------------~~~~l~~~d~~~~~~~~~~~l~~~~--~-~~~l~~~~~~~~~lv~~~~~dg------------ 340 (695)
T 2bkl_A 289 DEGA-------------PRQRVFEVDPAKPARASWKEIVPED--S-SASLLSVSIVGGHLSLEYLKDA------------ 340 (695)
T ss_dssp CTTC-------------TTCEEEEEBTTBCSGGGCEEEECCC--S-SCEEEEEEEETTEEEEEEEETT------------
T ss_pred CCCC-------------CCCEEEEEeCCCCCccCCeEEecCC--C-CCeEEEEEEECCEEEEEEEECC------------
Confidence 4321 12458899986654 88875421 1 1222334445888877765432
Q ss_pred CCcEEEEECCCCcEEEe
Q 006473 330 LNELYGFQLDNHRWYPL 346 (643)
Q Consensus 330 ~ndl~~yd~~t~~W~~l 346 (643)
...|+.+++....-..+
T Consensus 341 ~~~l~~~~~~g~~~~~l 357 (695)
T 2bkl_A 341 TSEVRVATLKGKPVRTV 357 (695)
T ss_dssp EEEEEEEETTCCEEEEC
T ss_pred EEEEEEEeCCCCeeEEe
Confidence 34577888755433333
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=91.60 E-value=4.9 Score=40.84 Aligned_cols=205 Identities=14% Similarity=0.109 Sum_probs=96.4
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (643)
..++++|+.+++-+.+.... .+..+....- ++..++|....... .....+|.+|+.+.....+.. .+..
T Consensus 168 ~~l~~~d~~~g~~~~l~~~~---~~~~~~~~sp~dg~~l~~~~~~~~~-----~~~~~l~~~d~~~~~~~~l~~--~~~~ 237 (388)
T 3pe7_A 168 CRLMRVDLKTGESTVILQEN---QWLGHPIYRPYDDSTVAFCHEGPHD-----LVDARMWLINEDGTNMRKVKT--HAEG 237 (388)
T ss_dssp EEEEEEETTTCCEEEEEEES---SCEEEEEEETTEEEEEEEEECSCTT-----TSSCSEEEEETTSCCCEESCC--CCTT
T ss_pred ceEEEEECCCCceEEeecCC---ccccccEECCCCCCEEEEEEecCCC-----CCcceEEEEeCCCCceEEeee--CCCC
Confidence 67999999998877775321 2233333332 34444443321111 013589999998877666643 1111
Q ss_pred CceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCC-CCccceeEEEeCCEEEEEc----
Q 006473 180 RSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWP-SPRSGFQFFVYQDEVFLYG---- 252 (643)
Q Consensus 180 Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P-~~R~~~s~~~~~~~iyv~G---- 252 (643)
.......+ +++.++|....... ....|+++|+.+.+-..+...+..... ....+..+...+..|++..
T Consensus 238 -~~~~~~~~spdg~~l~~~~~~~~~----~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 312 (388)
T 3pe7_A 238 -ESCTHEFWVPDGSALVYVSYLKGS----PDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDS 312 (388)
T ss_dssp -EEEEEEEECTTSSCEEEEEEETTC----CCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC--------
T ss_pred -cccccceECCCCCEEEEEecCCCC----CcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecc
Confidence 11112233 44433333332211 112599999999887766554210000 0001112222233333321
Q ss_pred CCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCC----Cc--eeeEEEE-ECCeEEEeccccccccCcccc
Q 006473 253 GYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPG----PR--AGFSMCV-HKKRALLFGGVVDMEMKGDVI 325 (643)
Q Consensus 253 G~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~----~R--~g~s~~~-~~~~iyvfGG~~~~~~~~~~~ 325 (643)
|+.. .....++++|+.+..-..+........ .+ .....+. -+++.++|....+
T Consensus 313 ~~~~------------~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~-------- 372 (388)
T 3pe7_A 313 GYKI------------ENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVH-------- 372 (388)
T ss_dssp ----------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT--------
T ss_pred cccc------------CCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCC--------
Confidence 1111 123469999999888777754311000 00 0112222 2555555544221
Q ss_pred ccccCCcEEEEECCCCcE
Q 006473 326 MSLFLNELYGFQLDNHRW 343 (643)
Q Consensus 326 ~~~~~ndl~~yd~~t~~W 343 (643)
-...||.+++....|
T Consensus 373 ---g~~~l~~~~l~~~~~ 387 (388)
T 3pe7_A 373 ---GKPALYLATLPESVW 387 (388)
T ss_dssp ---SSCEEEEEECCGGGG
T ss_pred ---CceeEEEEECChhcc
Confidence 134699999887666
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=91.50 E-value=13 Score=37.60 Aligned_cols=70 Identities=7% Similarity=-0.112 Sum_probs=38.2
Q ss_pred CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCC--CCCCCceeeEEEEE-CCeEEEeccccccccC
Q 006473 245 QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG--MPPGPRAGFSMCVH-KKRALLFGGVVDMEMK 321 (643)
Q Consensus 245 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g--~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~ 321 (643)
++ +++.|+.++. +.+||+.+.+-...-... ..+....-.++++. ++.+++.|+...
T Consensus 197 ~~-~l~~~~~dg~----------------i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~---- 255 (397)
T 1sq9_A 197 RG-LIATGFNNGT----------------VQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN---- 255 (397)
T ss_dssp TS-EEEEECTTSE----------------EEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET----
T ss_pred Cc-eEEEEeCCCc----------------EEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCC----
Confidence 55 7777776654 788998776544332210 00001122333333 567777777531
Q ss_pred ccccccccCCcEEEEECCCCc
Q 006473 322 GDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 322 ~~~~~~~~~ndl~~yd~~t~~ 342 (643)
-...|.+||+.+.+
T Consensus 256 -------~~g~i~i~d~~~~~ 269 (397)
T 1sq9_A 256 -------SFGCITLYETEFGE 269 (397)
T ss_dssp -------TEEEEEEEETTTCC
T ss_pred -------CCceEEEEECCCCc
Confidence 01358999998764
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=91.47 E-value=7.7 Score=38.31 Aligned_cols=189 Identities=10% Similarity=-0.002 Sum_probs=88.4
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~ 159 (643)
++.+++.|+. -..+.+||+.+.+-...-.. ....-.+++.. ++.+++.|+.. ..+.
T Consensus 66 ~~~~l~s~s~---------d~~i~vwd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~sgs~D-----------~~v~ 122 (304)
T 2ynn_A 66 RKNWIIVGSD---------DFRIRVFNYNTGEKVVDFEA---HPDYIRSIAVHPTKPYVLSGSDD-----------LTVK 122 (304)
T ss_dssp GGTEEEEEET---------TSEEEEEETTTCCEEEEEEC---CSSCEEEEEECSSSSEEEEEETT-----------SCEE
T ss_pred CCCEEEEECC---------CCEEEEEECCCCcEEEEEeC---CCCcEEEEEEcCCCCEEEEECCC-----------CeEE
Confidence 4566777762 23678889887653322111 11111222222 45566677653 3467
Q ss_pred EEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCcc
Q 006473 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237 (643)
Q Consensus 160 ~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~ 237 (643)
+||+.++.=......+ ....-.+++.. ++.+++.|+.+ ..+.+||+.+..-...... ...+.
T Consensus 123 lWd~~~~~~~~~~~~~--h~~~v~~v~~~p~~~~~l~sgs~D---------~~v~iwd~~~~~~~~~~~~-----~~~~~ 186 (304)
T 2ynn_A 123 LWNWENNWALEQTFEG--HEHFVMCVAFNPKDPSTFASGCLD---------RTVKVWSLGQSTPNFTLTT-----GQERG 186 (304)
T ss_dssp EEEGGGTTEEEEEECC--CCSCEEEEEECTTCTTEEEEEETT---------SEEEEEETTCSSCSEEEEC-----CCTTC
T ss_pred EEECCCCcchhhhhcc--cCCcEEEEEECCCCCCEEEEEeCC---------CeEEEEECCCCCccceecc-----CCcCc
Confidence 7787654211111111 11111122222 34567777753 3577788755331111101 01111
Q ss_pred ceeEEE--e-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEec
Q 006473 238 GFQFFV--Y-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFG 313 (643)
Q Consensus 238 ~~s~~~--~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfG 313 (643)
...+.. . ++.+++.|+.++. +.++|+.+..-...-. +. ...-.++++. ++.+++.|
T Consensus 187 v~~~~~~~~~~~~~l~s~s~D~~----------------i~iWd~~~~~~~~~~~-~h---~~~v~~~~~~p~~~~l~s~ 246 (304)
T 2ynn_A 187 VNYVDYYPLPDKPYMITASDDLT----------------IKIWDYQTKSCVATLE-GH---MSNVSFAVFHPTLPIIISG 246 (304)
T ss_dssp EEEEEECCSTTCCEEEEEETTSE----------------EEEEETTTTEEEEEEE-CC---SSCEEEEEECSSSSEEEEE
T ss_pred EEEEEEEEcCCCCEEEEEcCCCe----------------EEEEeCCCCccceeeC-CC---CCCEEEEEECCCCCEEEEE
Confidence 111111 1 4556777776654 7788877654322111 11 1111233333 45677777
Q ss_pred cccccccCccccccccCCcEEEEECCCCc
Q 006473 314 GVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 314 G~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
+.. ..|.+||+.+.+
T Consensus 247 s~D--------------g~i~iWd~~~~~ 261 (304)
T 2ynn_A 247 SED--------------GTLKIWNSSTYK 261 (304)
T ss_dssp ETT--------------SCEEEEETTTCC
T ss_pred cCC--------------CeEEEEECCCCc
Confidence 653 348899988755
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=91.46 E-value=15 Score=41.72 Aligned_cols=197 Identities=12% Similarity=0.068 Sum_probs=94.9
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCC---CCcceecC
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPN---QERFHHYK 156 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~---~~~~~~~~ 156 (643)
+++.++|+... .|.. ...|+++|+.++++..... +...+..+++ .++.++++....... ........
T Consensus 173 DG~~la~~~~~-~G~e---~~~i~v~dl~tg~~~~~~~-----~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~ 243 (741)
T 1yr2_A 173 DGRLLAYSVQD-GGSD---WRTVKFVGVADGKPLADEL-----KWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQ 243 (741)
T ss_dssp TSSEEEEEEEE-TTCS---EEEEEEEETTTCCEEEEEE-----EEEESCCCEESTTSEEEEEECCCC--------CCCCC
T ss_pred CCCEEEEEEcC-CCCc---eEEEEEEECCCCCCCCccC-----CCceeccEEEECCCEEEEEEecCcccccccccCCCCC
Confidence 45555555421 2221 2369999999998765421 1111112222 223333333221100 00001235
Q ss_pred eEEEEECCCCcE--EEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCC--c-eEEeccCCC
Q 006473 157 DFWMLDLKTNQW--EQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--K-WQEIKPRFG 229 (643)
Q Consensus 157 dv~~yD~~t~~W--~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~--~-W~~v~~~~~ 229 (643)
.+|++++.+..- ..+.. ....+... ..+.+ +++.+++....... ..+.+|++|+.+. . |..+...
T Consensus 244 ~v~~~~lgt~~~~~~lv~~-~~~~~~~~-~~~~~SpDG~~l~~~~~~~~~----~~~~l~~~d~~~~~~~~~~~l~~~-- 315 (741)
T 1yr2_A 244 TVWLHRLGTPQSADQPVFA-TPELPKRG-HGASVSSDGRWVVITSSEGTD----PVNTVHVARVTNGKIGPVTALIPD-- 315 (741)
T ss_dssp EEEEEETTSCGGGCEEEEC-CTTCTTCE-EEEEECTTSCEEEEEEECTTC----SCCEEEEEEEETTEECCCEEEECS--
T ss_pred EEEEEECCCCchhCEEEec-cCCCCeEE-EEEEECCCCCEEEEEEEccCC----CcceEEEEECCCCCCcccEEecCC--
Confidence 689999877652 12211 01112222 22233 44434443332211 2568999999877 6 8888654
Q ss_pred CCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCC--CeeEEeccCCCCCCCceeeEEEEECC
Q 006473 230 SMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT--WEWSKVKKIGMPPGPRAGFSMCVHKK 307 (643)
Q Consensus 230 ~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t--~~W~~l~~~g~~P~~R~g~s~~~~~~ 307 (643)
....... +...++.||+...... ....++.+|+.+ ..|..+.+.. +. .-..++..++
T Consensus 316 ---~~~~~~~-~~~dg~~l~~~s~~~~-------------~~~~l~~~d~~~~~~~~~~l~~~~--~~--~l~~~~~~~~ 374 (741)
T 1yr2_A 316 ---LKAQWDF-VDGVGDQLWFVSGDGA-------------PLKKIVRVDLSGSTPRFDTVVPES--KD--NLESVGIAGN 374 (741)
T ss_dssp ---SSSCEEE-EEEETTEEEEEECTTC-------------TTCEEEEEECSSSSCEEEEEECCC--SS--EEEEEEEEBT
T ss_pred ---CCceEEE-EeccCCEEEEEECCCC-------------CCCEEEEEeCCCCccccEEEecCC--CC--eEEEEEEECC
Confidence 1222222 2345778887754322 124588999877 5798886421 11 1223344477
Q ss_pred eEEEeccc
Q 006473 308 RALLFGGV 315 (643)
Q Consensus 308 ~iyvfGG~ 315 (643)
++++....
T Consensus 375 ~lv~~~~~ 382 (741)
T 1yr2_A 375 RLFASYIH 382 (741)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 77666543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.40 E-value=4.5 Score=40.23 Aligned_cols=196 Identities=13% Similarity=0.122 Sum_probs=95.5
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--C---CEEEEEeCccCCC
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--K---NYLYIFGGEFTSP 147 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~---~~iyvfGG~~~~~ 147 (643)
++...|. +..+++.|+.. .+ -+.+.+|++.+.+...+.... ... ...++.+ + +.+++.|+..
T Consensus 23 ~~~~~p~-~~~l~~~~s~~-~~-----d~~v~iw~~~~~~~~~~~~~~--~~~-~v~~~~~~~~~~~~~~l~~~~~d--- 89 (357)
T 3i2n_A 23 DCKWVPC-SAKFVTMGNFA-RG-----TGVIQLYEIQHGDLKLLREIE--KAK-PIKCGTFGATSLQQRYLATGDFG--- 89 (357)
T ss_dssp EEEECTT-SSEEEEEEC---CC-----CEEEEEEEECSSSEEEEEEEE--ESS-CEEEEECTTCCTTTCCEEEEETT---
T ss_pred EEEEcCC-CceEEEecCcc-CC-----CcEEEEEeCCCCcccceeeec--ccC-cEEEEEEcCCCCCCceEEEecCC---
Confidence 4445552 24666666520 00 246888999888765442211 111 1122233 2 4677777642
Q ss_pred CCCcceecCeEEEEECCCCc--EEEeccCCCCCCCceeEEEE-------ECCEEEEEeeeecCCCceeeeccEEEEEcCC
Q 006473 148 NQERFHHYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVL-------YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (643)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~--W~~~~~~g~P~~Rs~h~~~~-------~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t 218 (643)
..+.+||+.+.. -..+.. ...+ -.++.. .++.+++.|+.+ ..+.+||+.+
T Consensus 90 --------g~i~iwd~~~~~~~~~~~~~--~~~~--v~~~~~~~~~~~s~~~~~l~~~~~d---------~~i~vwd~~~ 148 (357)
T 3i2n_A 90 --------GNLHIWNLEAPEMPVYSVKG--HKEI--INAIDGIGGLGIGEGAPEIVTGSRD---------GTVKVWDPRQ 148 (357)
T ss_dssp --------SCEEEECTTSCSSCSEEECC--CSSC--EEEEEEESGGGCC-CCCEEEEEETT---------SCEEEECTTS
T ss_pred --------CeEEEEeCCCCCccEEEEEe--cccc--eEEEeeccccccCCCccEEEEEeCC---------CeEEEEeCCC
Confidence 357788887654 122211 1111 111211 145566666642 3588888877
Q ss_pred Cc--eEEeccCCCCCCCCCccceeEE----E-eCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCC
Q 006473 219 FK--WQEIKPRFGSMWPSPRSGFQFF----V-YQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG 291 (643)
Q Consensus 219 ~~--W~~v~~~~~~~~P~~R~~~s~~----~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g 291 (643)
.. ...+..... ...+.-.+++ . .++.+++.|+.++. +.+||+.+..-......
T Consensus 149 ~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~----------------i~i~d~~~~~~~~~~~~- 208 (357)
T 3i2n_A 149 KDDPVANMEPVQG---ENKRDCWTVAFGNAYNQEERVVCAGYDNGD----------------IKLFDLRNMALRWETNI- 208 (357)
T ss_dssp CSSCSEEECCCTT---SCCCCEEEEEEECCCC-CCCEEEEEETTSE----------------EEEEETTTTEEEEEEEC-
T ss_pred CCCcceeccccCC---CCCCceEEEEEEeccCCCCCEEEEEccCCe----------------EEEEECccCceeeecCC-
Confidence 54 333333211 1111222222 1 26677777766544 78889877664333221
Q ss_pred CCCCCceeeEEEEE----CCeEEEeccccccccCccccccccCCcEEEEECCC
Q 006473 292 MPPGPRAGFSMCVH----KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (643)
Q Consensus 292 ~~P~~R~g~s~~~~----~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (643)
...-.++++. ++..++.|+.. ..|.+||+.+
T Consensus 209 ----~~~v~~~~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~~ 243 (357)
T 3i2n_A 209 ----KNGVCSLEFDRKDISMNKLVATSLE--------------GKFHVFDMRT 243 (357)
T ss_dssp ----SSCEEEEEESCSSSSCCEEEEEEST--------------TEEEEEEEEE
T ss_pred ----CCceEEEEcCCCCCCCCEEEEECCC--------------CeEEEEeCcC
Confidence 1223344444 46677777643 3477777654
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=91.38 E-value=5.8 Score=42.98 Aligned_cols=150 Identities=9% Similarity=-0.031 Sum_probs=75.0
Q ss_pred EEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC-CceeEEEEE--C-CEEEEEeeeecCCCceeeeccEE
Q 006473 137 LYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP-RSGHRMVLY--K-HKIIVFGGFYDTLREVRYYNDLY 212 (643)
Q Consensus 137 iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~-Rs~h~~~~~--~-~~lyvfGG~~~~~~~~~~~~dv~ 212 (643)
+++.|+.. ..+.+||+.+.+-...-. .... ...-.++.+ + +.+++.|+.+ ..+.
T Consensus 175 ~l~~~~~d-----------~~v~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------g~i~ 232 (615)
T 1pgu_A 175 RSMTVGDD-----------GSVVFYQGPPFKFSASDR--THHKQGSFVRDVEFSPDSGEFVITVGSD---------RKIS 232 (615)
T ss_dssp EEEEEETT-----------TEEEEEETTTBEEEEEEC--SSSCTTCCEEEEEECSTTCCEEEEEETT---------CCEE
T ss_pred EEEEEeCC-----------CcEEEEeCCCcceeeeec--ccCCCCceEEEEEECCCCCCEEEEEeCC---------CeEE
Confidence 66776642 457788887655433211 1111 002222333 4 6677777642 4688
Q ss_pred EEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCC
Q 006473 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGM 292 (643)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~ 292 (643)
+||+.+.+....-..+......+... +...++.+++.|+.++. +.+||+.+.+....-....
T Consensus 233 vwd~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~l~~~~~d~~----------------i~~wd~~~~~~~~~~~~~~ 294 (615)
T 1pgu_A 233 CFDGKSGEFLKYIEDDQEPVQGGIFA--LSWLDSQKFATVGADAT----------------IRVWDVTTSKCVQKWTLDK 294 (615)
T ss_dssp EEETTTCCEEEECCBTTBCCCSCEEE--EEESSSSEEEEEETTSE----------------EEEEETTTTEEEEEEECCT
T ss_pred EEECCCCCEeEEecccccccCCceEE--EEEcCCCEEEEEcCCCc----------------EEEEECCCCcEEEEEcCCC
Confidence 89988766433321100000112222 22226777777776544 7788887765544322211
Q ss_pred CCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCC
Q 006473 293 PPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (643)
Q Consensus 293 ~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (643)
.+......+++..++..++.|+.. +.|.+||+.+
T Consensus 295 ~~~~~~~~~~~~~~~~~l~~~~~~--------------g~i~~~d~~~ 328 (615)
T 1pgu_A 295 QQLGNQQVGVVATGNGRIISLSLD--------------GTLNFYELGH 328 (615)
T ss_dssp TCGGGCEEEEEEEETTEEEEEETT--------------SCEEEEETTE
T ss_pred CcccCceeEEEeCCCCeEEEEECC--------------CCEEEEECCC
Confidence 111122233333366667777653 3478888775
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=91.37 E-value=5.9 Score=44.86 Aligned_cols=124 Identities=16% Similarity=0.111 Sum_probs=70.1
Q ss_pred EEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCc--EEEeccCCC---CC---CCceeEEEEECCEEEEEeeeecC
Q 006473 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGC---PS---PRSGHRMVLYKHKIIVFGGFYDT 201 (643)
Q Consensus 130 ~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g~---P~---~Rs~h~~~~~~~~lyvfGG~~~~ 201 (643)
-++.++.||+.... +.|+.||..|++ |+.-..... +. .....+.++.+++||+...
T Consensus 73 P~v~~g~vyv~~~~------------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~---- 136 (677)
T 1kb0_A 73 PVVVDGIMYVSASW------------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW---- 136 (677)
T ss_dssp CEEETTEEEEECGG------------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT----
T ss_pred CEEECCEEEEECCC------------CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC----
Confidence 34569999998642 468899998875 876433110 00 0112345567888887532
Q ss_pred CCceeeeccEEEEEcCCCc--eEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeC
Q 006473 202 LREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDP 279 (643)
Q Consensus 202 ~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~ 279 (643)
-..|+.+|..+.+ |+.-..... ........+.++.++.||+..+.... .....++.||+
T Consensus 137 ------dg~l~alD~~tG~~~W~~~~~~~~--~~~~~~~~~p~v~~~~v~v~~~~~~~-----------~~~g~v~a~D~ 197 (677)
T 1kb0_A 137 ------DGRLIALDAATGKEVWHQNTFEGQ--KGSLTITGAPRVFKGKVIIGNGGAEY-----------GVRGYITAYDA 197 (677)
T ss_dssp ------TSEEEEEETTTCCEEEEEETTTTC--CSSCBCCSCCEEETTEEEECCBCTTT-----------CCBCEEEEEET
T ss_pred ------CCEEEEEECCCCCEEeeecCCcCc--CcCcccccCcEEECCEEEEEeccccc-----------CCCCEEEEEEC
Confidence 2469999998765 876543100 01111222334557777764432111 12356899998
Q ss_pred CCC--eeEEec
Q 006473 280 RTW--EWSKVK 288 (643)
Q Consensus 280 ~t~--~W~~l~ 288 (643)
.+. .|..-.
T Consensus 198 ~tG~~~W~~~~ 208 (677)
T 1kb0_A 198 ETGERKWRWFS 208 (677)
T ss_dssp TTCCEEEEEES
T ss_pred CCCcEEEEecc
Confidence 765 587654
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=91.32 E-value=11 Score=42.85 Aligned_cols=123 Identities=15% Similarity=0.098 Sum_probs=69.1
Q ss_pred EEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCc--EEEeccCCC---CC---CCceeEEEEECCEEEEEeeeecCC
Q 006473 131 VSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGC---PS---PRSGHRMVLYKHKIIVFGGFYDTL 202 (643)
Q Consensus 131 ~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g~---P~---~Rs~h~~~~~~~~lyvfGG~~~~~ 202 (643)
++.++.||+.+. ...|+.||..|++ |+.-..... +. .....+.++.+++||+...
T Consensus 67 ~v~~g~vyv~~~------------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~----- 129 (689)
T 1yiq_A 67 IVVDGVMYTTGP------------FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL----- 129 (689)
T ss_dssp EEETTEEEEECG------------GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-----
T ss_pred EEECCEEEEEcC------------CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc-----
Confidence 456999999754 2468899988774 876432110 00 0111234567888887532
Q ss_pred CceeeeccEEEEEcCCCc--eEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCC
Q 006473 203 REVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR 280 (643)
Q Consensus 203 ~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~ 280 (643)
-..|+.+|..+.+ |+.-..... ........+.++.++.||+-.+.... .....++.||+.
T Consensus 130 -----dg~l~AlDa~TG~~~W~~~~~~~~--~~~~~~~~sP~v~~g~v~vg~~~~~~-----------~~~g~v~a~D~~ 191 (689)
T 1yiq_A 130 -----DGRLEAIDAKTGQRAWSVDTRADH--KRSYTITGAPRVVNGKVVIGNGGAEF-----------GVRGYVTAYDAE 191 (689)
T ss_dssp -----TSEEEEEETTTCCEEEEEECCSCT--TSCCBCCSCCEEETTEEEECCBCTTT-----------CCBCEEEEEETT
T ss_pred -----CCEEEEEECCCCCEeeeecCcCCC--CCCccccCCcEEECCEEEEEeCCCcc-----------CCCCEEEEEECC
Confidence 2468999988765 876543100 01112222335568887763322111 123468999987
Q ss_pred CC--eeEEec
Q 006473 281 TW--EWSKVK 288 (643)
Q Consensus 281 t~--~W~~l~ 288 (643)
+. .|..-.
T Consensus 192 tG~~~W~~~~ 201 (689)
T 1yiq_A 192 TGKEAWRFYT 201 (689)
T ss_dssp TCCEEEEEES
T ss_pred CCcEEEEecc
Confidence 65 588653
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.17 E-value=5.3 Score=39.00 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=16.4
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK 114 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~ 114 (643)
++++++.|+. + +.+.+|++.+++-.
T Consensus 78 ~~~~l~sgs~--D-------g~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 78 EGNYLAVGTS--S-------AEVQLWDVQQQKRL 102 (318)
T ss_dssp TSSEEEEEET--T-------SEEEEEETTTTEEE
T ss_pred CCCEEEEEEC--C-------CcEEEeecCCceeE
Confidence 5667777772 2 35778888887644
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=91.16 E-value=4.6 Score=41.09 Aligned_cols=92 Identities=11% Similarity=0.062 Sum_probs=47.7
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (643)
..+.+||+.......+..... ....-.+++.. ++.+++.|+.. ..+.+||+....-..+.. ..
T Consensus 141 ~~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~i~d~~~~~~~~~~~---h~- 204 (383)
T 3ei3_B 141 GATTLRDFSGSVIQVFAKTDS-WDYWYCCVDVSVSRQMLATGDST-----------GRLLLLGLDGHEIFKEKL---HK- 204 (383)
T ss_dssp TEEEEEETTSCEEEEEECCCC-SSCCEEEEEEETTTTEEEEEETT-----------SEEEEEETTSCEEEEEEC---SS-
T ss_pred CEEEEEECCCCceEEEeccCC-CCCCeEEEEECCCCCEEEEECCC-----------CCEEEEECCCCEEEEecc---CC-
Confidence 357788888776666543221 11112222222 45666666642 468888885444333322 11
Q ss_pred CceeEEEEE--CCE-EEEEeeeecCCCceeeeccEEEEEcCC
Q 006473 180 RSGHRMVLY--KHK-IIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (643)
Q Consensus 180 Rs~h~~~~~--~~~-lyvfGG~~~~~~~~~~~~dv~~yD~~t 218 (643)
..-.++.+ ++. +++.|+.+ ..+.+||+.+
T Consensus 205 -~~v~~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~ 236 (383)
T 3ei3_B 205 -AKVTHAEFNPRCDWLMATSSVD---------ATVKLWDLRN 236 (383)
T ss_dssp -SCEEEEEECSSCTTEEEEEETT---------SEEEEEEGGG
T ss_pred -CcEEEEEECCCCCCEEEEEeCC---------CEEEEEeCCC
Confidence 11222333 333 67777642 4578888876
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=91.13 E-value=7.1 Score=39.57 Aligned_cols=113 Identities=9% Similarity=0.050 Sum_probs=57.4
Q ss_pred eccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCE-EEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEE
Q 006473 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDE-VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (643)
Q Consensus 208 ~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (643)
...|+++|+.+.....+... +.......+...++. |++... ... ......+|.+++.+..+..
T Consensus 167 ~~~l~~~d~~~g~~~~~~~~-----~~~~~~~~~sp~dg~~l~~~~~-~~~----------~~~~~~l~~~d~~~~~~~~ 230 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIHQD-----TAWLGHPIYRPFDDSTVGFCHE-GPH----------DLVDARMWLVNEDGSNVRK 230 (396)
T ss_dssp CEEEEEEETTTCCEEEEEEE-----SSCEEEEEEETTEEEEEEEEEC-SCS----------SSCSCCCEEEETTSCCCEE
T ss_pred cceEEEEECCCCcEEeeccC-----CcccccceECCCCCCEEEEEec-CCC----------CCCCceEEEEECCCCceeE
Confidence 35799999998887766532 111111122221243 444432 111 0122468999998877776
Q ss_pred eccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 287 VKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 287 l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
+... .+ ......+++. +++.+++..... ......|++||+.+.....+..
T Consensus 231 l~~~--~~-~~~~~~~~~spdg~~l~~~~~~~---------~~~~~~l~~~d~~~g~~~~l~~ 281 (396)
T 3c5m_A 231 IKEH--AE-GESCTHEFWIPDGSAMAYVSYFK---------GQTDRVIYKANPETLENEEVMV 281 (396)
T ss_dssp SSCC--CT-TEEEEEEEECTTSSCEEEEEEET---------TTCCEEEEEECTTTCCEEEEEE
T ss_pred eecc--CC-CccccceEECCCCCEEEEEecCC---------CCccceEEEEECCCCCeEEeee
Confidence 6431 01 1112223333 555555554321 0111349999999887766653
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=91.05 E-value=4.7 Score=45.50 Aligned_cols=151 Identities=11% Similarity=0.048 Sum_probs=78.6
Q ss_pred cCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc---eEEeccCCCCC
Q 006473 155 YKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK---WQEIKPRFGSM 231 (643)
Q Consensus 155 ~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~---W~~v~~~~~~~ 231 (643)
.+.+|.++..+..|..+... .... ...+..++.||+.... +. ....|+++|+.+.. |..+.+..
T Consensus 251 ~~~l~~~~~~~~~~~~l~~~--~~~~--~~~~~~~g~l~~~s~~-~~-----~~~~l~~~d~~~~~~~~~~~l~~~~--- 317 (695)
T 2bkl_A 251 ENDVYWKRPGEKDFRLLVKG--VGAK--YEVHAWKDRFYVLTDE-GA-----PRQRVFEVDPAKPARASWKEIVPED--- 317 (695)
T ss_dssp EEEEEEECTTCSSCEEEEEC--SSCC--EEEEEETTEEEEEECT-TC-----TTCEEEEEBTTBCSGGGCEEEECCC---
T ss_pred ceEEEEEcCCCCceEEeecC--CCce--EEEEecCCcEEEEECC-CC-----CCCEEEEEeCCCCCccCCeEEecCC---
Confidence 35789998877888887652 1111 1222245555555332 11 13578999987654 88776541
Q ss_pred CCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEE-ECCeEE
Q 006473 232 WPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRAL 310 (643)
Q Consensus 232 ~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~-~~~~iy 310 (643)
+ ...-..+...++.|++....++ ...+|.+++....-..+.. |....-.+++. -++..+
T Consensus 318 -~-~~~l~~~~~~~~~lv~~~~~dg--------------~~~l~~~~~~g~~~~~l~~----~~~~~v~~~~~s~d~~~l 377 (695)
T 2bkl_A 318 -S-SASLLSVSIVGGHLSLEYLKDA--------------TSEVRVATLKGKPVRTVQL----PGVGAASNLMGLEDLDDA 377 (695)
T ss_dssp -S-SCEEEEEEEETTEEEEEEEETT--------------EEEEEEEETTCCEEEECCC----SSSSEECCCBSCTTCSEE
T ss_pred -C-CCeEEEEEEECCEEEEEEEECC--------------EEEEEEEeCCCCeeEEecC----CCCeEEEEeecCCCCCEE
Confidence 1 1111233444888887765433 2458888875543333321 11111111111 133333
Q ss_pred EeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 311 LFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 311 vfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
+|...+. .....||.||+.++....+..
T Consensus 378 ~~~~ss~----------~~P~~v~~~d~~~g~~~~l~~ 405 (695)
T 2bkl_A 378 YYVFTSF----------TTPRQIYKTSVSTGKSELWAK 405 (695)
T ss_dssp EEEEEET----------TEEEEEEEEETTTCCEEEEEE
T ss_pred EEEEcCC----------CCCCEEEEEECCCCcEEEEec
Confidence 3333221 113569999999988766654
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.00 E-value=12 Score=36.22 Aligned_cols=105 Identities=10% Similarity=0.073 Sum_probs=55.8
Q ss_pred CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCC
Q 006473 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEK 267 (643)
Q Consensus 189 ~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~ 267 (643)
++. ++.|+. -..+.+||+.+.+-...-.. ....-.+++.. ++ .++.|+.++.
T Consensus 195 ~~~-~~~~~~---------dg~i~i~d~~~~~~~~~~~~------~~~~i~~~~~~~~~-~l~~~~~dg~---------- 247 (313)
T 3odt_A 195 DGH-FISCSN---------DGLIKLVDMHTGDVLRTYEG------HESFVYCIKLLPNG-DIVSCGEDRT---------- 247 (313)
T ss_dssp TTE-EEEEET---------TSEEEEEETTTCCEEEEEEC------CSSCEEEEEECTTS-CEEEEETTSE----------
T ss_pred CCe-EEEccC---------CCeEEEEECCchhhhhhhhc------CCceEEEEEEecCC-CEEEEecCCE----------
Confidence 666 556653 24688899876543222111 11111223333 44 4666766554
Q ss_pred CceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCCCcEEE
Q 006473 268 GIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (643)
Q Consensus 268 ~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (643)
+.+||+.+.+....-.. +.. .-.++++. +++ ++.|+.. +.|.+||+.+.+|..
T Consensus 248 ------v~iwd~~~~~~~~~~~~---~~~-~i~~~~~~~~~~-~~~~~~d--------------g~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 248 ------VRIWSKENGSLKQVITL---PAI-SIWSVDCMSNGD-IIVGSSD--------------NLVRIFSQEKSRWAS 301 (313)
T ss_dssp ------EEEECTTTCCEEEEEEC---SSS-CEEEEEECTTSC-EEEEETT--------------SCEEEEESCGGGCCC
T ss_pred ------EEEEECCCCceeEEEec---cCc-eEEEEEEccCCC-EEEEeCC--------------CcEEEEeCCCCceee
Confidence 88899877765443321 111 22334444 455 5556543 459999998876644
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=90.99 E-value=7.2 Score=42.24 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=18.6
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCC
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ 111 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~ 111 (643)
.++.+.| ++.++++|+ + +.+.+|++.+.
T Consensus 22 ~~~~~sp--dg~~l~~~~----~------~~v~v~~~~~~ 49 (615)
T 1pgu_A 22 THLSYDP--TTNAIAYPC----G------KSAFVRCLDDG 49 (615)
T ss_dssp CCCEEET--TTTEEEEEE----T------TEEEEEECCSS
T ss_pred eEEEECC--CCCEEEEec----C------CeEEEEECCCC
Confidence 4455555 667777776 1 36888998865
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=90.97 E-value=0.92 Score=47.86 Aligned_cols=22 Identities=9% Similarity=0.019 Sum_probs=14.9
Q ss_pred CCEEEEEeeeecCCCceeeeccEEEEEcCCC
Q 006473 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (643)
Q Consensus 189 ~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~ 219 (643)
++.+++.|+. -..|.+||+.+.
T Consensus 243 ~~~~l~s~~~---------dg~i~i~d~~~~ 264 (430)
T 2xyi_A 243 HESLFGSVAD---------DQKLMIWDTRNN 264 (430)
T ss_dssp CTTEEEEEET---------TSEEEEEETTCS
T ss_pred CCCEEEEEeC---------CCeEEEEECCCC
Confidence 4567766664 246888998765
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.96 E-value=13 Score=38.39 Aligned_cols=66 Identities=9% Similarity=0.107 Sum_probs=37.5
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccE
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv 211 (643)
++.+++.|+.. ..+.+||+.+.+-...-. .+.....-.++.+ ++.+++.|+.+ ..+
T Consensus 181 ~~~~l~~~~~d-----------~~i~iwd~~~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~~~d---------g~i 238 (437)
T 3gre_A 181 EKSLLVALTNL-----------SRVIIFDIRTLERLQIIE--NSPRHGAVSSICIDEECCVLILGTTR---------GII 238 (437)
T ss_dssp SCEEEEEEETT-----------SEEEEEETTTCCEEEEEE--CCGGGCCEEEEEECTTSCEEEEEETT---------SCE
T ss_pred CCCEEEEEeCC-----------CeEEEEeCCCCeeeEEEc--cCCCCCceEEEEECCCCCEEEEEcCC---------CeE
Confidence 46677777642 468899998776433221 1111112222333 56667777643 458
Q ss_pred EEEEcCCCce
Q 006473 212 YVFDLDQFKW 221 (643)
Q Consensus 212 ~~yD~~t~~W 221 (643)
.+||+.+...
T Consensus 239 ~iwd~~~~~~ 248 (437)
T 3gre_A 239 DIWDIRFNVL 248 (437)
T ss_dssp EEEETTTTEE
T ss_pred EEEEcCCccE
Confidence 8899887654
|
| >1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=90.84 E-value=4.4 Score=38.25 Aligned_cols=145 Identities=18% Similarity=0.390 Sum_probs=78.3
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCC--CcEE--EecC--CCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcc
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEK--QEWK--VISS--PNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERF 152 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~--~~W~--~l~s--~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~ 152 (643)
++++|+|=| +.+|+|+... .... .|.. +.+|. .--++... ++++|+|-|
T Consensus 16 ~g~~yfFkg-----------~~~Wr~~~~~~~~~~~p~~Is~~w~glP~--~IDAa~~~~~~~~~yfFkG---------- 72 (195)
T 1itv_A 16 GNQLYLFKD-----------GKYWRFSEGRGSRPQGPFLIADKWPALPR--KLDSVFEEPLSKKLFFFSG---------- 72 (195)
T ss_dssp TTEEEEEET-----------TEEEEECCSSSCCCEEEEEHHHHCTTSCS--SCSEEEECTTTCCEEEEET----------
T ss_pred CCEEEEEEC-----------CEEEEEECCccccCCCcEEhhhccCCCCC--CccEEEEECCCCeEEEEeC----------
Confidence 689999988 3678887655 2232 2221 23332 22333333 678999988
Q ss_pred eecCeEEEEECCCCcE-EEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceE-----Ee
Q 006473 153 HHYKDFWMLDLKTNQW-EQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ-----EI 224 (643)
Q Consensus 153 ~~~~dv~~yD~~t~~W-~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~-----~v 224 (643)
+.+|+|+..+..- ..+..-|+|......-+++. ++++|+|-| +..|+||..+.+-. .+
T Consensus 73 ---~~yw~~~~~~~~~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg-----------~~ywr~d~~~~~~~~gyPr~i 138 (195)
T 1itv_A 73 ---RQVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG-----------RRLWRFDVKAQMVDPRSASEV 138 (195)
T ss_dssp ---TEEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET-----------TEEEEEETTTTEECGGGCEEH
T ss_pred ---CEEEEEcCCccCCCEEeeecccCCCccceeEEEEcCCCeEEEEeC-----------CEEEEEeCCcccccCCCccCh
Confidence 4578888643211 11222234543222333332 679999977 35789998765311 11
Q ss_pred ccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCe
Q 006473 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (643)
Q Consensus 225 ~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (643)
...-.+. |. .-.++...++.+|+|-|. ..|+|+..+.+
T Consensus 139 ~~~w~Gv-p~--~idaa~~~~g~~Yffkg~------------------~y~~~~~~~~~ 176 (195)
T 1itv_A 139 DRMFPGV-PL--DTHDVFQFREKAYFCQDR------------------FYWRVSSRSEL 176 (195)
T ss_dssp HHHSTTS-CS--SCSEEEEETTEEEEEETT------------------EEEEEECCTTC
T ss_pred hhcCCCC-CC--CCCEEEEeCCeEEEEeCC------------------EEEEEECCccE
Confidence 1111111 21 122344457899998774 37788876654
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=90.78 E-value=9.7 Score=43.26 Aligned_cols=173 Identities=11% Similarity=0.054 Sum_probs=91.5
Q ss_pred ceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCC--c-EEEecCCCCCCCceeeEEEEECCEEEEEeCccCCC
Q 006473 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--E-WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSP 147 (643)
Q Consensus 71 ~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~--~-W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~ 147 (643)
..+....| +++.+++.... +. ...+.+|.+|+.+. . |+.+.... ... ...+...++.||+.......
T Consensus 270 ~~~~~~Sp--DG~~l~~~~~~--~~--~~~~~l~~~d~~~~~~~~~~~l~~~~--~~~-~~~~~~dg~~l~~~s~~~~~- 339 (741)
T 1yr2_A 270 GHGASVSS--DGRWVVITSSE--GT--DPVNTVHVARVTNGKIGPVTALIPDL--KAQ-WDFVDGVGDQLWFVSGDGAP- 339 (741)
T ss_dssp EEEEEECT--TSCEEEEEEEC--TT--CSCCEEEEEEEETTEECCCEEEECSS--SSC-EEEEEEETTEEEEEECTTCT-
T ss_pred EEEEEECC--CCCEEEEEEEc--cC--CCcceEEEEECCCCCCcccEEecCCC--Cce-EEEEeccCCEEEEEECCCCC-
Confidence 33444454 55544444421 11 12468999999887 7 88886532 112 22223457788887654211
Q ss_pred CCCcceecCeEEEEECCC--CcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEec
Q 006473 148 NQERFHHYKDFWMLDLKT--NQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (643)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t--~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (643)
...++++|+.+ ..|..+.+.. .. .-......+++|++....++ ...||++++....-..+.
T Consensus 340 -------~~~l~~~d~~~~~~~~~~l~~~~-~~--~l~~~~~~~~~lv~~~~~dg-------~~~l~~~~~~g~~~~~l~ 402 (741)
T 1yr2_A 340 -------LKKIVRVDLSGSTPRFDTVVPES-KD--NLESVGIAGNRLFASYIHDA-------KSQVLAFDLDGKPAGAVS 402 (741)
T ss_dssp -------TCEEEEEECSSSSCEEEEEECCC-SS--EEEEEEEEBTEEEEEEEETT-------EEEEEEEETTSCEEEECB
T ss_pred -------CCEEEEEeCCCCccccEEEecCC-CC--eEEEEEEECCEEEEEEEECC-------EEEEEEEeCCCCceeecc
Confidence 25699999988 5798875421 11 11223344788877765432 457889987544333332
Q ss_pred cCCCCCCCCCccceeEEEe-C-CEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEecc
Q 006473 226 PRFGSMWPSPRSGFQFFVY-Q-DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (643)
Q Consensus 226 ~~~~~~~P~~R~~~s~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~ 289 (643)
. |...+-..+... + +.|++.. .+. ..-..+|.||+.+...+.+..
T Consensus 403 ~------~~~~~v~~~~~s~d~~~l~~~~-ss~------------~~P~~i~~~d~~tg~~~~l~~ 449 (741)
T 1yr2_A 403 L------PGIGSASGLSGRPGDRHAYLSF-SSF------------TQPATVLALDPATAKTTPWEP 449 (741)
T ss_dssp C------SSSCEEEEEECCBTCSCEEEEE-EET------------TEEEEEEEEETTTTEEEECSC
T ss_pred C------CCCeEEEEeecCCCCCEEEEEE-cCC------------CCCCEEEEEECCCCcEEEEec
Confidence 1 211111111111 2 2333322 111 234678999988887766643
|
| >1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=90.72 E-value=2 Score=41.09 Aligned_cols=104 Identities=14% Similarity=0.198 Sum_probs=59.3
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcE---EEecCCCCCCC-ceeeEEEEE--CCEEEEEeCccCCCCCCccee
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW---KVISSPNSPPP-RSAHQAVSW--KNYLYIFGGEFTSPNQERFHH 154 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W---~~l~s~~~P~p-Rs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~ 154 (643)
++++|+|=| +.+|+|+..+-.- +.|.....|.. ..--+++.. ++++|+|-|
T Consensus 79 ~~~iyfFkG-----------~~~w~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG------------ 135 (207)
T 1pex_A 79 HDLIFIFRG-----------RKFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG------------ 135 (207)
T ss_dssp TTEEEEEET-----------TEEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET------------
T ss_pred CCcEEEEcc-----------CEEEEEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeC------------
Confidence 589999988 3567776432111 23333233321 122233333 489999988
Q ss_pred cCeEEEEECCCCcEEEecc-------CCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCce
Q 006473 155 YKDFWMLDLKTNQWEQLNL-------KGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (643)
Q Consensus 155 ~~dv~~yD~~t~~W~~~~~-------~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W 221 (643)
+..|+||..+++-..--+ .++| ..-.++...++++|+|-| +..|+||..+.+-
T Consensus 136 -~~ywr~d~~~~~~d~gyPr~i~~~~~Gip--~~iDaAf~~~g~~YfFkg-----------~~y~rf~~~~~~v 195 (207)
T 1pex_A 136 -NQVWRYDDTNHIMDKDYPRLIEEDFPGIG--DKVDAVYEKNGYIYFFNG-----------PIQFEYSIWSNRI 195 (207)
T ss_dssp -TEEEEEETTTTEECSSCCCBHHHHSTTSC--SCCSEEEEETTEEEEEET-----------TEEEEEETTTTEE
T ss_pred -CEEEEEeCcCccccCCCCccHHHcCCCCC--CCccEEEEcCCcEEEEEC-----------CEEEEEeCCccEE
Confidence 468999987654221000 1223 223345557999999977 4578888876543
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=90.69 E-value=12 Score=42.15 Aligned_cols=110 Identities=9% Similarity=0.050 Sum_probs=54.5
Q ss_pred eEEEEECCC-CcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCC
Q 006473 157 DFWMLDLKT-NQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSP 235 (643)
Q Consensus 157 dv~~yD~~t-~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~ 235 (643)
.+|++|+.+ ..-..+.... +....-..++.-+++.++++...... ....|+++|+.+.+...+...........
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~pDg~~l~~~~~~~~~----~~~~i~~~d~~~g~~~~~~~~~~~~~~~~ 338 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGK-EQDIYLARVNWRDPQHLSFQRQSRDQ----KKLDLVEVTLASNQQRVLAHETSPTWVPL 338 (741)
T ss_dssp EEEEECSSTTCCCEEECCCS-CSSEEEEEEEEEETTEEEEEEEETTS----SEEEEEEEETTTCCEEEEEEEECSSCCCC
T ss_pred EEEEEECCCCCceEEecCCC-CcceEEEEEEeCCCCEEEEEEecccC----CeEEEEEEECCCCceEEEEEcCCCCcCCc
Confidence 789999988 7765554310 11111111111344444444432221 24689999999888766644311000000
Q ss_pred ccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEec
Q 006473 236 RSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (643)
Q Consensus 236 R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~ 288 (643)
.. .++.. ++++++.++.++. ..+|.+++... +..+.
T Consensus 339 ~~--~~~~spdg~~~~~~~~~g~--------------~~l~~~~~~~~-~~~l~ 375 (741)
T 2ecf_A 339 HN--SLRFLDDGSILWSSERTGF--------------QHLYRIDSKGK-AAALT 375 (741)
T ss_dssp CS--CCEECTTSCEEEEECTTSS--------------CEEEEECSSSC-EEESC
T ss_pred CC--ceEECCCCeEEEEecCCCc--------------cEEEEEcCCCC-eeeee
Confidence 11 12222 5556666654332 45888887655 55543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.67 E-value=3.8 Score=40.82 Aligned_cols=105 Identities=12% Similarity=0.119 Sum_probs=52.6
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCc--EEEecCCCCCCCceeeEEEE-----ECCEEEEEeCccCCCCCCcce
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVS-----WKNYLYIFGGEFTSPNQERFH 153 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~--W~~l~s~~~P~pRs~ha~~~-----~~~~iyvfGG~~~~~~~~~~~ 153 (643)
++.+++.|+. -..+.+||+.+.. ...+........+.-.+++. -++.+++.|+..
T Consensus 128 ~~~~l~~~~~---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d--------- 189 (357)
T 3i2n_A 128 GAPEIVTGSR---------DGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN--------- 189 (357)
T ss_dssp CCCEEEEEET---------TSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT---------
T ss_pred CccEEEEEeC---------CCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC---------
Confidence 4556666662 1367888888764 33333222111222233331 256666666542
Q ss_pred ecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE----CCEEEEEeeeecCCCceeeeccEEEEEcCC
Q 006473 154 HYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY----KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (643)
Q Consensus 154 ~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~----~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t 218 (643)
..+.+||+.+..-..... . ...-.+++.. ++.+++.|+.+ ..+.+||+.+
T Consensus 190 --~~i~i~d~~~~~~~~~~~--~--~~~v~~~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~ 243 (357)
T 3i2n_A 190 --GDIKLFDLRNMALRWETN--I--KNGVCSLEFDRKDISMNKLVATSLE---------GKFHVFDMRT 243 (357)
T ss_dssp --SEEEEEETTTTEEEEEEE--C--SSCEEEEEESCSSSSCCEEEEEEST---------TEEEEEEEEE
T ss_pred --CeEEEEECccCceeeecC--C--CCceEEEEcCCCCCCCCEEEEECCC---------CeEEEEeCcC
Confidence 468899998876433322 1 1122233332 45666666542 3466777654
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.66 E-value=4 Score=41.81 Aligned_cols=150 Identities=13% Similarity=0.063 Sum_probs=75.3
Q ss_pred CEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC----CceeEEEEE--C-CEEEEEeeeecCCCceee
Q 006473 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP----RSGHRMVLY--K-HKIIVFGGFYDTLREVRY 207 (643)
Q Consensus 135 ~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~----Rs~h~~~~~--~-~~lyvfGG~~~~~~~~~~ 207 (643)
+.+++.|+.. ..+.+||+.+......-. .+.. .....++.+ + ..+++.|+.++.
T Consensus 178 ~~~l~~~~~d-----------g~v~iwd~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~------ 238 (416)
T 2pm9_A 178 AHVFASAGSS-----------NFASIWDLKAKKEVIHLS--YTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN------ 238 (416)
T ss_dssp TTEEEEESSS-----------SCEEEEETTTTEEEEEEC--CCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS------
T ss_pred CcEEEEEcCC-----------CCEEEEECCCCCcceEEe--ccccccccCCceEEEEECCCCCCEEEEEECCCC------
Confidence 5677877752 358899998876543322 1211 122222333 2 356676664321
Q ss_pred eccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeE
Q 006473 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (643)
Q Consensus 208 ~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (643)
...+.+||+.+..- .+..... .....-.+++.. ++.+++.|+.++. +.+||+.+.+-.
T Consensus 239 ~~~i~~~d~~~~~~-~~~~~~~---~~~~~v~~~~~s~~~~~~l~s~~~dg~----------------v~~wd~~~~~~~ 298 (416)
T 2pm9_A 239 DPSILIWDLRNANT-PLQTLNQ---GHQKGILSLDWCHQDEHLLLSSGRDNT----------------VLLWNPESAEQL 298 (416)
T ss_dssp SCCCCEEETTSTTS-CSBCCCS---CCSSCEEEEEECSSCSSCEEEEESSSE----------------EEEECSSSCCEE
T ss_pred CceEEEEeCCCCCC-CcEEeec---CccCceeEEEeCCCCCCeEEEEeCCCC----------------EEEeeCCCCccc
Confidence 12678888876421 1111100 011111222222 5677788877654 778887765433
Q ss_pred EeccCCCCCCCceeeEEEEE-CC-eEEEeccccccccCccccccccCCcEEEEECCCC
Q 006473 286 KVKKIGMPPGPRAGFSMCVH-KK-RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (643)
Q Consensus 286 ~l~~~g~~P~~R~g~s~~~~-~~-~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (643)
..-.. ....-.++++. ++ .+++.|+.. +.|.+||+.+.
T Consensus 299 ~~~~~----~~~~v~~~~~s~~~~~~l~s~~~d--------------~~i~iw~~~~~ 338 (416)
T 2pm9_A 299 SQFPA----RGNWCFKTKFAPEAPDLFACASFD--------------NKIEVQTLQNL 338 (416)
T ss_dssp EEEEC----SSSCCCCEEECTTCTTEEEECCSS--------------SEEEEEESCCC
T ss_pred eeecC----CCCceEEEEECCCCCCEEEEEecC--------------CcEEEEEccCC
Confidence 22111 01111233343 34 677887753 34888988764
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=90.59 E-value=1.8 Score=52.26 Aligned_cols=187 Identities=9% Similarity=0.025 Sum_probs=93.3
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~ 160 (643)
++.++++|+. + +.++.|+..+.......... .......+..-++..++.||.. ..+.+
T Consensus 972 ~g~~l~~g~~--~-------g~i~i~d~~~~~~~~~~~~h--~~~v~~l~~s~dg~~l~s~~~d-----------g~i~v 1029 (1249)
T 3sfz_A 972 HLEYVAFGDE--D-------GAIKIIELPNNRVFSSGVGH--KKAVRHIQFTADGKTLISSSED-----------SVIQV 1029 (1249)
T ss_dssp TSSEEEEEET--T-------SCCEEEETTTTSCEEECCCC--SSCCCCEEECSSSSCEEEECSS-----------SBEEE
T ss_pred CCCEEEEEcC--C-------CCEEEEEcCCCceeeecccC--CCceEEEEECCCCCEEEEEcCC-----------CEEEE
Confidence 5667777762 2 36788888877544332211 1111111111255666777642 35888
Q ss_pred EECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCcccee
Q 006473 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240 (643)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s 240 (643)
||+.++....+.. ....-.+++...+..++.|+.+ ..+.+||+.+.+-...-.. ..... .+
T Consensus 1030 wd~~~~~~~~~~~----~~~~v~~~~~~~~~~l~~~~~d---------g~v~vwd~~~~~~~~~~~~-----~~~~v-~~ 1090 (1249)
T 3sfz_A 1030 WNWQTGDYVFLQA----HQETVKDFRLLQDSRLLSWSFD---------GTVKVWNVITGRIERDFTC-----HQGTV-LS 1090 (1249)
T ss_dssp EETTTTEEECCBC----CSSCEEEEEECSSSEEEEEESS---------SEEEEEETTTTCCCEEEEC-----CSSCC-CC
T ss_pred EECCCCceEEEec----CCCcEEEEEEcCCCcEEEEECC---------CcEEEEECCCCceeEEEcc-----cCCcE-EE
Confidence 9998887664332 1112223333334344555542 4588889877653222111 11111 12
Q ss_pred EEE-eCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEecccccc
Q 006473 241 FFV-YQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDM 318 (643)
Q Consensus 241 ~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~ 318 (643)
++. .++.+++.|+.++. +.+||..+.. .+.... .....-.++++. ++++++.|+.+
T Consensus 1091 ~~~s~d~~~l~s~s~d~~----------------v~iwd~~~~~--~~~~l~--~h~~~v~~~~~s~dg~~lat~~~d-- 1148 (1249)
T 3sfz_A 1091 CAISSDATKFSSTSADKT----------------AKIWSFDLLS--PLHELK--GHNGCVRCSAFSLDGILLATGDDN-- 1148 (1249)
T ss_dssp EEECSSSSSCEEECCSSC----------------CCEECSSSSS--CSBCCC--CCSSCEEEEEECSSSSEEEEEETT--
T ss_pred EEECCCCCEEEEEcCCCc----------------EEEEECCCcc--eeeeec--cCCCcEEEEEECCCCCEEEEEeCC--
Confidence 222 26667777777654 5566665433 111110 011111223332 67788888753
Q ss_pred ccCccccccccCCcEEEEECCCCc
Q 006473 319 EMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 319 ~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
..|.+||+.+.+
T Consensus 1149 ------------g~i~vwd~~~~~ 1160 (1249)
T 3sfz_A 1149 ------------GEIRIWNVSDGQ 1160 (1249)
T ss_dssp ------------SCCCEEESSSSC
T ss_pred ------------CEEEEEECCCCc
Confidence 237889987754
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=90.54 E-value=13 Score=41.86 Aligned_cols=123 Identities=13% Similarity=0.066 Sum_probs=69.5
Q ss_pred EEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCc--EEEeccCCCC------CCCceeEEEEECCEEEEEeeeecC
Q 006473 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGCP------SPRSGHRMVLYKHKIIVFGGFYDT 201 (643)
Q Consensus 130 ~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g~P------~~Rs~h~~~~~~~~lyvfGG~~~~ 201 (643)
-++.++.||+.... ..|+.||..+++ |+.-...... ......+.++.+++||+...
T Consensus 62 P~v~~g~vyv~~~~------------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---- 125 (668)
T 1kv9_A 62 PLFHDGVIYTSMSW------------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL---- 125 (668)
T ss_dssp CEEETTEEEEEEGG------------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT----
T ss_pred CEEECCEEEEECCC------------CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC----
Confidence 34569999998642 468899988774 8764321100 00012234567888887532
Q ss_pred CCceeeeccEEEEEcCCCc--eEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeC
Q 006473 202 LREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDP 279 (643)
Q Consensus 202 ~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~ 279 (643)
-..|+.||..+.+ |+.-...+. .......+.++.++.||+..+.... .....++.||+
T Consensus 126 ------dg~l~alD~~tG~~~W~~~~~~~~---~~~~~~~~P~v~~~~v~vg~~~~~~-----------~~~g~v~a~D~ 185 (668)
T 1kv9_A 126 ------DGRLIALDAKTGKAIWSQQTTDPA---KPYSITGAPRVVKGKVIIGNGGAEY-----------GVRGFVSAYDA 185 (668)
T ss_dssp ------TSEEEEEETTTCCEEEEEECSCTT---SSCBCCSCCEEETTEEEECCBCTTT-----------CCBCEEEEEET
T ss_pred ------CCEEEEEECCCCCEeeeeccCCCC---CcceecCCCEEECCEEEEeCCCCCc-----------CCCCEEEEEEC
Confidence 2468999988765 876543210 1112222335568877764322110 12346899998
Q ss_pred CCC--eeEEec
Q 006473 280 RTW--EWSKVK 288 (643)
Q Consensus 280 ~t~--~W~~l~ 288 (643)
.+. .|+.-.
T Consensus 186 ~tG~~~W~~~~ 196 (668)
T 1kv9_A 186 DTGKLAWRFYT 196 (668)
T ss_dssp TTCCEEEEEES
T ss_pred CCCcEEEEecc
Confidence 765 588753
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=90.51 E-value=11 Score=36.93 Aligned_cols=123 Identities=17% Similarity=0.082 Sum_probs=60.6
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEE-ecCCCCCC--CceeeEEEEE--CCEEEEEeCccCC
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKV-ISSPNSPP--PRSAHQAVSW--KNYLYIFGGEFTS 146 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~-l~s~~~P~--pRs~ha~~~~--~~~iyvfGG~~~~ 146 (643)
+.+++.|. +..||+.++. .+.|++||+.+.+-.. +..+. +. ...-+.++.. +..||+.......
T Consensus 37 ~~~~~s~d-g~~l~v~~~~---------~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 105 (337)
T 1pby_B 37 MVPMVAPG-GRIAYATVNK---------SESLVKIDLVTGETLGRIDLST-PEERVKSLFGAALSPDGKTLAIYESPVRL 105 (337)
T ss_dssp CCEEECTT-SSEEEEEETT---------TTEEEEEETTTCCEEEEEECCB-TTEEEECTTCEEECTTSSEEEEEEEEEEE
T ss_pred cceEEcCC-CCEEEEEeCC---------CCeEEEEECCCCCeEeeEEcCC-cccccccccceEECCCCCEEEEEeccccc
Confidence 34555552 3467776551 2478999998876543 32211 00 0011223332 4467776421100
Q ss_pred CCCCcce-ecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-C-CEEEEEeeeecCCCceeeeccEEEEEcCCCceE
Q 006473 147 PNQERFH-HYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222 (643)
Q Consensus 147 ~~~~~~~-~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~-~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~ 222 (643)
... .+. .-+.+++||+.+.+....-.. ...-+.+++. + ++||+.+ ..+++||+.+.+-.
T Consensus 106 ~~~-~~~~~~~~i~v~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~------------~~i~~~d~~~~~~~ 167 (337)
T 1pby_B 106 ELT-HFEVQPTRVALYDAETLSRRKAFEA----PRQITMLAWARDGSKLYGLG------------RDLHVMDPEAGTLV 167 (337)
T ss_dssp CSS-CEEECCCEEEEEETTTTEEEEEEEC----CSSCCCEEECTTSSCEEEES------------SSEEEEETTTTEEE
T ss_pred ccc-cccccCceEEEEECCCCcEEEEEeC----CCCcceeEECCCCCEEEEeC------------CeEEEEECCCCcEe
Confidence 000 000 126799999988776543221 1112233332 3 3466651 35899999887644
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=90.47 E-value=16 Score=36.85 Aligned_cols=182 Identities=9% Similarity=0.049 Sum_probs=91.2
Q ss_pred cEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCC
Q 006473 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (643)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (643)
.+|+=.-...+|+.+..+ ......++... .+.+|++|-. ..+++-.-.-.+|+.+.........
T Consensus 16 ~~~~s~d~g~~W~~~~~~---~~~~~~~v~~~~~~~~~~~G~~------------g~i~~s~DgG~tW~~~~~~~~~~~~ 80 (327)
T 2xbg_A 16 GSAIPALDYNPWEAIQLP---TTATILDMSFIDRHHGWLVGVN------------ATLMETRDGGQTWEPRTLVLDHSDY 80 (327)
T ss_dssp --CCCBCSSCCEEEEECS---CSSCEEEEEESSSSCEEEEETT------------TEEEEESSTTSSCEECCCCCSCCCC
T ss_pred ceeecCCCCCCceEeecC---CCCcEEEEEECCCCcEEEEcCC------------CeEEEeCCCCCCCeECCCCCCCCCc
Confidence 444433445689988643 22333333333 5678886631 2244433334589998642111122
Q ss_pred ceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEE-eCCEEEEEcCCCCCCC
Q 006473 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFV-YQDEVFLYGGYSKEVS 259 (643)
Q Consensus 181 s~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~-~~~~iyv~GG~~~~~~ 259 (643)
...++....+.+|+.|.. ..+++-.-.-.+|+.+.... +.+-..+.++. -++.+|+.|.. +.
T Consensus 81 ~~~~i~~~~~~~~~~g~~----------g~i~~S~DgG~tW~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~-g~-- 143 (327)
T 2xbg_A 81 RFNSVSFQGNEGWIVGEP----------PIMLHTTDGGQSWSQIPLDP----KLPGSPRLIKALGNGSAEMITNV-GA-- 143 (327)
T ss_dssp EEEEEEEETTEEEEEEET----------TEEEEESSTTSSCEECCCCT----TCSSCEEEEEEEETTEEEEEETT-CC--
T ss_pred cEEEEEecCCeEEEEECC----------CeEEEECCCCCCceECcccc----CCCCCeEEEEEECCCCEEEEeCC-cc--
Confidence 233444456788887531 12333222246799987541 11111233433 36788887752 11
Q ss_pred CccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEEC
Q 006473 260 TDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQL 338 (643)
Q Consensus 260 ~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~ 338 (643)
+++-.=...+|+.+... .+...+++++. ++.+|++|-. ..+|+-.-
T Consensus 144 --------------v~~S~DgG~tW~~~~~~----~~~~~~~~~~~~~~~~~~~g~~---------------G~~~~S~d 190 (327)
T 2xbg_A 144 --------------IYRTKDSGKNWQALVQE----AIGVMRNLNRSPSGEYVAVSSR---------------GSFYSTWE 190 (327)
T ss_dssp --------------EEEESSTTSSEEEEECS----CCCCEEEEEECTTSCEEEEETT---------------SSEEEEEC
T ss_pred --------------EEEEcCCCCCCEEeecC----CCcceEEEEEcCCCcEEEEECC---------------CcEEEEeC
Confidence 44433346689998642 22233455554 4666665521 12555432
Q ss_pred C-CCcEEEeEe
Q 006473 339 D-NHRWYPLEL 348 (643)
Q Consensus 339 ~-t~~W~~l~~ 348 (643)
. ...|..+..
T Consensus 191 ~gG~tW~~~~~ 201 (327)
T 2xbg_A 191 PGQTAWEPHNR 201 (327)
T ss_dssp TTCSSCEEEEC
T ss_pred CCCCceeECCC
Confidence 2 568888754
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=90.39 E-value=19 Score=37.64 Aligned_cols=209 Identities=10% Similarity=0.027 Sum_probs=110.0
Q ss_pred ceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCC
Q 006473 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPN 148 (643)
Q Consensus 71 ~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~ 148 (643)
.+.+++.+ ++.||+.... .+.+++||+.++.-..+.... ...+ ++.. ++.||+.....
T Consensus 133 P~~la~d~--~g~lyv~d~~---------~~~I~~id~~~g~~~~~~~~~----~~~~-ia~~~~g~~l~~~d~~~---- 192 (409)
T 3hrp_A 133 MWGIAAVG--NNTVLAYQRD---------DPRVRLISVDDNKVTTVHPGF----KGGK-PAVTKDKQRVYSIGWEG---- 192 (409)
T ss_dssp EEEEEECS--TTEEEEEETT---------TTEEEEEETTTTEEEEEEETC----CBCB-CEECTTSSEEEEEBSST----
T ss_pred ceEEEEeC--CCCEEEEecC---------CCcEEEEECCCCEEEEeeccC----CCCc-eeEecCCCcEEEEecCC----
Confidence 34555554 6788888651 247899999988776654321 1223 2222 45677765321
Q ss_pred CCcceecCeEEEEECCCCc-EEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEec
Q 006473 149 QERFHHYKDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (643)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~-W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (643)
-..+++|+..+.. ...+.....+....-+.+++. ++.||+.-+ ...+++||+.+.....+.
T Consensus 193 ------~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~----------~~~I~~~d~~~~~~~~~~ 256 (409)
T 3hrp_A 193 ------THTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS----------NKNFGRFNVKTQEVTLIK 256 (409)
T ss_dssp ------TCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT----------TCEEEEEETTTCCEEEEE
T ss_pred ------CceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC----------CCcEEEEECCCCCEEEEe
Confidence 0268999986543 233311001112222344444 578998321 246999999887755552
Q ss_pred cCCCCCCCCCccc-e-eEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCC------
Q 006473 226 PRFGSMWPSPRSG-F-QFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPG------ 295 (643)
Q Consensus 226 ~~~~~~~P~~R~~-~-s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~------ 295 (643)
..... ...... + .+++. ++.||+..... +.+++|++... ...+...+..+.
T Consensus 257 ~~~~~--g~~~~~P~~~ia~~p~~g~lyv~d~~~----------------~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~ 317 (409)
T 3hrp_A 257 QLELS--GSLGTNPGPYLIYYFVDSNFYMSDQNL----------------SSVYKITPDGE-CEWFCGSATQKTVQDGLR 317 (409)
T ss_dssp ECCCC--SCCCCSSCCEEEEETTTTEEEEEETTT----------------TEEEEECTTCC-EEEEEECTTCCSCBCEEG
T ss_pred ccccc--CCCCCCccccEEEeCCCCEEEEEeCCC----------------CEEEEEecCCC-EEEEEeCCCCCCcCCCcc
Confidence 21100 111111 1 34444 68899875433 24888887654 222221110000
Q ss_pred --C--ceeeEEEEE-CCeEEEecc-ccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 296 --P--RAGFSMCVH-KKRALLFGG-VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 296 --~--R~g~s~~~~-~~~iyvfGG-~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
. ..-.++++. ++.||+... . .+.|.+|++.+.....+.-
T Consensus 318 ~~~~~~~P~gia~d~dG~lyvad~~~--------------~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 318 EEALFAQPNGMTVDEDGNFYIVDGFK--------------GYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp GGCBCSSEEEEEECTTCCEEEEETTT--------------TCEEEEEETTTTEEEEEEE
T ss_pred cccEeCCCeEEEEeCCCCEEEEeCCC--------------CCEEEEEECCCCEEEEEeC
Confidence 0 112344444 567888753 2 2469999977777665554
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=90.29 E-value=14 Score=35.92 Aligned_cols=111 Identities=12% Similarity=0.155 Sum_probs=53.8
Q ss_pred EEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCC--cEEEecCCCCCCCceeeEEEEE-C---CEEEEEeCccCCC
Q 006473 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSPPPRSAHQAVSW-K---NYLYIFGGEFTSP 147 (643)
Q Consensus 74 ~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~~P~pRs~ha~~~~-~---~~iyvfGG~~~~~ 147 (643)
+...| ++.+++.|+. + ..+.+||+.+. .|+.+.... .....-.++.+ . +.+++.|+..
T Consensus 17 ~~~~~--~~~~l~~~~~--d-------g~i~iw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~d~~~l~s~~~d--- 80 (351)
T 3f3f_A 17 VVYDF--YGRHVATCSS--D-------QHIKVFKLDKDTSNWELSDSWR--AHDSSIVAIDWASPEYGRIIASASYD--- 80 (351)
T ss_dssp EEECS--SSSEEEEEET--T-------SEEEEEEECSSSCCEEEEEEEE--CCSSCEEEEEECCGGGCSEEEEEETT---
T ss_pred EEEcC--CCCEEEEeeC--C-------CeEEEEECCCCCCcceecceec--cCCCcEEEEEEcCCCCCCEEEEEcCC---
Confidence 44444 5677777772 2 35777777643 444332111 11111222233 2 6677777753
Q ss_pred CCCcceecCeEEEEECCCC-------cEEEeccCCCCCCCceeEEEEE--C--CEEEEEeeeecCCCceeeeccEEEEEc
Q 006473 148 NQERFHHYKDFWMLDLKTN-------QWEQLNLKGCPSPRSGHRMVLY--K--HKIIVFGGFYDTLREVRYYNDLYVFDL 216 (643)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~-------~W~~~~~~g~P~~Rs~h~~~~~--~--~~lyvfGG~~~~~~~~~~~~dv~~yD~ 216 (643)
..+.+||+.+. .|..+... ......-..+.+ . +.+++.|+.+ ..+.+||+
T Consensus 81 --------g~v~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~d---------g~v~iwd~ 141 (351)
T 3f3f_A 81 --------KTVKLWEEDPDQEECSGRRWNKLCTL--NDSKGSLYSVKFAPAHLGLKLACLGND---------GILRLYDA 141 (351)
T ss_dssp --------SCEEEEEECTTSCTTSSCSEEEEEEE--CCCSSCEEEEEECCGGGCSEEEEEETT---------CEEEEEEC
T ss_pred --------CeEEEEecCCCcccccccCcceeeee--cccCCceeEEEEcCCCCCcEEEEecCC---------CcEEEecC
Confidence 34667776653 34433321 111111222333 2 5666666642 45788887
Q ss_pred CCC
Q 006473 217 DQF 219 (643)
Q Consensus 217 ~t~ 219 (643)
.+.
T Consensus 142 ~~~ 144 (351)
T 3f3f_A 142 LEP 144 (351)
T ss_dssp SST
T ss_pred CCh
Confidence 654
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=90.16 E-value=12 Score=41.21 Aligned_cols=124 Identities=13% Similarity=0.159 Sum_probs=68.6
Q ss_pred EEEECCEEEEEeCccCCCCCCcceecCeEEEEEC-CCC--cEEEeccCCC---CCC---CceeEEEEECCEEEEEeeeec
Q 006473 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDL-KTN--QWEQLNLKGC---PSP---RSGHRMVLYKHKIIVFGGFYD 200 (643)
Q Consensus 130 ~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~-~t~--~W~~~~~~g~---P~~---Rs~h~~~~~~~~lyvfGG~~~ 200 (643)
-++.++.||+.... ...++.||. .++ .|+.-..... +.. ....+.++.+++||+...
T Consensus 58 P~v~~g~vyv~~~~-----------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--- 123 (571)
T 2ad6_A 58 PLVIGDMMYVHSAF-----------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA--- 123 (571)
T ss_dssp CEEETTEEEEECST-----------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---
T ss_pred cEEECCEEEEEeCC-----------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC---
Confidence 34569999998652 146899998 776 4886433110 000 112234667888887632
Q ss_pred CCCceeeeccEEEEEcCCCc--eEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEe
Q 006473 201 TLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLD 278 (643)
Q Consensus 201 ~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd 278 (643)
...|+.+|..+.+ |+.-..... .......+.++.++.||+-.+.... .....++.||
T Consensus 124 -------dg~l~alD~~tG~~~W~~~~~~~~---~~~~~~~~P~v~~g~v~vg~~~~~~-----------~~~g~v~a~D 182 (571)
T 2ad6_A 124 -------NGHLLALDAKTGKINWEVEVCDPK---VGSTLTQAPFVAKDTVLMGCSGAEL-----------GVRGAVNAFD 182 (571)
T ss_dssp -------TSEEEEEETTTCCEEEEEECCCGG---GTCBCCSCCEEETTEEEEECBCGGG-----------TCCCEEEEEE
T ss_pred -------CCEEEEEECCCCCEEEEecCCCCC---ccceeccCCEEECCEEEEEecCCcc-----------CCCCEEEEEE
Confidence 2468999998764 875432100 0001112234558887765432110 1124588999
Q ss_pred CCCC--eeEEec
Q 006473 279 PRTW--EWSKVK 288 (643)
Q Consensus 279 ~~t~--~W~~l~ 288 (643)
+.+. .|+.-.
T Consensus 183 ~~tG~~~W~~~~ 194 (571)
T 2ad6_A 183 LKTGELKWRAFA 194 (571)
T ss_dssp TTTCCEEEEEES
T ss_pred CCCCcEEEEEcc
Confidence 8654 687653
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=90.14 E-value=14 Score=35.83 Aligned_cols=29 Identities=7% Similarity=0.020 Sum_probs=20.5
Q ss_pred CCeEEEeccccccccCccccccccCCcEEEEECCCC-cEEEeEe
Q 006473 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH-RWYPLEL 348 (643)
Q Consensus 306 ~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~-~W~~l~~ 348 (643)
++++++.||.. +.|.+|++.+. .|..+..
T Consensus 317 ~~~~l~s~~~d--------------g~v~iw~~~~~~~~~~~~~ 346 (351)
T 3f3f_A 317 TGTILSSAGDD--------------GKVRLWKATYSNEFKCMSV 346 (351)
T ss_dssp SSCCEEEEETT--------------SCEEEEEECTTSCEEEEEE
T ss_pred CCCEEEEecCC--------------CcEEEEecCcCcchhheee
Confidence 56677777753 34889998874 7877765
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.07 E-value=6.7 Score=40.09 Aligned_cols=206 Identities=12% Similarity=0.028 Sum_probs=95.5
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCC----C-cEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccC
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEK----Q-EWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFT 145 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~----~-~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~ 145 (643)
++...| ++.+++.|+. -..+.+|++.+ . .-..+... ...-.+++.. ++.+++.|+..
T Consensus 72 ~~~~s~--~~~~l~~~~~---------dg~v~vw~~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~l~s~~~d- 135 (416)
T 2pm9_A 72 DLDWSH--NNKIIAGALD---------NGSLELYSTNEANNAINSMARFSNH----SSSVKTVKFNAKQDNVLASGGNN- 135 (416)
T ss_dssp EEEECS--SSSCEEEEES---------SSCEEEECCSSTTSCCCEEEECCCS----SSCCCEEEECSSSTTBEEEECSS-
T ss_pred EEEECC--CCCeEEEEcc---------CCeEEEeecccccccccchhhccCC----ccceEEEEEcCCCCCEEEEEcCC-
Confidence 344444 5667777772 23678888876 2 22222211 1111222222 26677777753
Q ss_pred CCCCCcceecCeEEEEECCCCc------EEEeccCCCCCCCceeEEEEE-C-CEEEEEeeeecCCCceeeeccEEEEEcC
Q 006473 146 SPNQERFHHYKDFWMLDLKTNQ------WEQLNLKGCPSPRSGHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (643)
Q Consensus 146 ~~~~~~~~~~~dv~~yD~~t~~------W~~~~~~g~P~~Rs~h~~~~~-~-~~lyvfGG~~~~~~~~~~~~dv~~yD~~ 217 (643)
..+.+||+.+.. -.............-.+++.. + +.+++.|+.+ ..+.+||+.
T Consensus 136 ----------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------g~v~iwd~~ 196 (416)
T 2pm9_A 136 ----------GEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSS---------NFASIWDLK 196 (416)
T ss_dssp ----------SCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSS---------SCEEEEETT
T ss_pred ----------CeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCC---------CCEEEEECC
Confidence 357788887664 111100000011111222222 2 5677777642 458899998
Q ss_pred CCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCC
Q 006473 218 QFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPG 295 (643)
Q Consensus 218 t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~ 295 (643)
+......-............-.+++.. +..+++.|+.++. ...+.+||+.+..-. +.... ...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-------------~~~i~~~d~~~~~~~-~~~~~-~~~ 261 (416)
T 2pm9_A 197 AKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN-------------DPSILIWDLRNANTP-LQTLN-QGH 261 (416)
T ss_dssp TTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS-------------SCCCCEEETTSTTSC-SBCCC-SCC
T ss_pred CCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC-------------CceEEEEeCCCCCCC-cEEee-cCc
Confidence 765433322210000001112223333 2357777766541 012667777653210 11100 001
Q ss_pred CceeeEEEEE--CCeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 296 PRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 296 ~R~g~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
...-.++++. ++.+++.|+.. +.|.+||+.+.+
T Consensus 262 ~~~v~~~~~s~~~~~~l~s~~~d--------------g~v~~wd~~~~~ 296 (416)
T 2pm9_A 262 QKGILSLDWCHQDEHLLLSSGRD--------------NTVLLWNPESAE 296 (416)
T ss_dssp SSCEEEEEECSSCSSCEEEEESS--------------SEEEEECSSSCC
T ss_pred cCceeEEEeCCCCCCeEEEEeCC--------------CCEEEeeCCCCc
Confidence 1222334443 57777777753 348889887764
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=89.93 E-value=19 Score=36.76 Aligned_cols=185 Identities=6% Similarity=-0.089 Sum_probs=91.5
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (643)
+.+.++|+.+.+........ .. -.+++.- ++.+++.|+. +.+.+++..+..............
T Consensus 157 ~~i~iwd~~~~~~~~~~~~~--~~--V~~v~fspdg~~l~s~s~------------~~~~~~~~~~~~~~~~~~~~~~~~ 220 (365)
T 4h5i_A 157 AIMRIIDPSDLTEKFEIETR--GE--VKDLHFSTDGKVVAYITG------------SSLEVISTVTGSCIARKTDFDKNW 220 (365)
T ss_dssp CEEEEEETTTTEEEEEEECS--SC--CCEEEECTTSSEEEEECS------------SCEEEEETTTCCEEEEECCCCTTE
T ss_pred CEEEEeECCCCcEEEEeCCC--Cc--eEEEEEccCCceEEeccc------------eeEEEEEeccCcceeeeecCCCCC
Confidence 46788999888765432211 11 1222222 5566666542 346677777776543322111111
Q ss_pred CceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCC
Q 006473 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEV 258 (643)
Q Consensus 180 Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~ 258 (643)
........-++.+++.++..... ...++.++.....+......... .....-.+++.. ++.+++.|+.++.
T Consensus 221 ~v~~v~fspdg~~l~~~s~d~~~-----~~~i~~~~~~~~~~~~~~~~~~~--~~~~~V~~~~~Spdg~~lasgs~D~~- 292 (365)
T 4h5i_A 221 SLSKINFIADDTVLIAASLKKGK-----GIVLTKISIKSGNTSVLRSKQVT--NRFKGITSMDVDMKGELAVLASNDNS- 292 (365)
T ss_dssp EEEEEEEEETTEEEEEEEESSSC-----CEEEEEEEEETTEEEEEEEEEEE--SSCSCEEEEEECTTSCEEEEEETTSC-
T ss_pred CEEEEEEcCCCCEEEEEecCCcc-----eeEEeecccccceecceeeeeec--CCCCCeEeEEECCCCCceEEEcCCCE-
Confidence 11111222377777777764432 22466677666555433221000 011111122222 7788888887765
Q ss_pred CCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEE
Q 006473 259 STDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQ 337 (643)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd 337 (643)
+.+||+.+.+-...-..+. ...-.++++. ++++++-|+.+ +.|-+|+
T Consensus 293 ---------------V~iwd~~~~~~~~~~~~gH---~~~V~~v~fSpdg~~laS~S~D--------------~tvrvw~ 340 (365)
T 4h5i_A 293 ---------------IALVKLKDLSMSKIFKQAH---SFAITEVTISPDSTYVASVSAA--------------NTIHIIK 340 (365)
T ss_dssp ---------------EEEEETTTTEEEEEETTSS---SSCEEEEEECTTSCEEEEEETT--------------SEEEEEE
T ss_pred ---------------EEEEECCCCcEEEEecCcc---cCCEEEEEECCCCCEEEEEeCC--------------CeEEEEE
Confidence 7889987765332211111 1111233333 67777777754 3588888
Q ss_pred CCCC
Q 006473 338 LDNH 341 (643)
Q Consensus 338 ~~t~ 341 (643)
+..+
T Consensus 341 ip~~ 344 (365)
T 4h5i_A 341 LPLN 344 (365)
T ss_dssp CCTT
T ss_pred cCCC
Confidence 7543
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=89.67 E-value=5.7 Score=39.53 Aligned_cols=140 Identities=9% Similarity=-0.029 Sum_probs=68.6
Q ss_pred ccEEEEECCCCcE-EEecCCCCCCC-ceeeEEEEE-C----CEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEecc
Q 006473 101 GDLYRYDVEKQEW-KVISSPNSPPP-RSAHQAVSW-K----NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL 173 (643)
Q Consensus 101 ndv~~yd~~~~~W-~~l~s~~~P~p-Rs~ha~~~~-~----~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~ 173 (643)
+.+.+|+..+... ..+.....+.. ..-.+++.. + +.+++.|+.. ..+.+||+.+.+-...-.
T Consensus 44 ~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-----------g~i~v~d~~~~~~~~~~~ 112 (366)
T 3k26_A 44 NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR-----------GIIRIINPITMQCIKHYV 112 (366)
T ss_dssp TEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETT-----------CEEEEECTTTCCEEEEEE
T ss_pred CEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCC-----------CEEEEEEchhceEeeeec
Confidence 3578888886543 23321111111 112222222 3 5677777752 357888887765432211
Q ss_pred CCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEE
Q 006473 174 KGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFL 250 (643)
Q Consensus 174 ~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv 250 (643)
.. ...-.+++.. ++.+++.|+.+ ..+.+||+.+.+-...-.... .....-.+++.. ++..++
T Consensus 113 --~~-~~~i~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~ 177 (366)
T 3k26_A 113 --GH-GNAINELKFHPRDPNLLLSVSKD---------HALRLWNIQTDTLVAIFGGVE---GHRDEVLSADYDLLGEKIM 177 (366)
T ss_dssp --SC-CSCEEEEEECSSCTTEEEEEETT---------SCEEEEETTTTEEEEEECSTT---SCSSCEEEEEECTTSSEEE
T ss_pred --CC-CCcEEEEEECCCCCCEEEEEeCC---------CeEEEEEeecCeEEEEecccc---cccCceeEEEECCCCCEEE
Confidence 01 1111222222 45677777742 468889998765433321100 111112223332 566777
Q ss_pred EcCCCCCCCCccCCCCCCceeeeEEEEeCCCC
Q 006473 251 YGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (643)
Q Consensus 251 ~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (643)
.|+.++. +.+||+.+.
T Consensus 178 ~~~~dg~----------------i~i~d~~~~ 193 (366)
T 3k26_A 178 SCGMDHS----------------LKLWRINSK 193 (366)
T ss_dssp EEETTSC----------------EEEEESCSH
T ss_pred EecCCCC----------------EEEEECCCC
Confidence 7777655 777887654
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=89.41 E-value=29 Score=38.24 Aligned_cols=191 Identities=15% Similarity=0.118 Sum_probs=95.9
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEE-EecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCe
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKD 157 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~-~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~d 157 (643)
++.+||... ..+.|+++|+.+++-. .+..+ ..-|.++.. +..+|+.+. -+.
T Consensus 166 ~~~~~V~~~---------~~~~V~viD~~t~~v~~~i~~g-----~~p~~v~~SpDGr~lyv~~~------------dg~ 219 (567)
T 1qks_A 166 ENLFSVTLR---------DAGQIALIDGSTYEIKTVLDTG-----YAVHISRLSASGRYLFVIGR------------DGK 219 (567)
T ss_dssp GGEEEEEET---------TTTEEEEEETTTCCEEEEEECS-----SCEEEEEECTTSCEEEEEET------------TSE
T ss_pred CceEEEEeC---------CCCeEEEEECCCCeEEEEEeCC-----CCccceEECCCCCEEEEEcC------------CCe
Confidence 467777655 1358999999987654 34332 223444433 567887642 146
Q ss_pred EEEEECC--CCcE-EEeccCCCCCCCceeEEEEE-----CC-EEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCC
Q 006473 158 FWMLDLK--TNQW-EQLNLKGCPSPRSGHRMVLY-----KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (643)
Q Consensus 158 v~~yD~~--t~~W-~~~~~~g~P~~Rs~h~~~~~-----~~-~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (643)
+.+||+. +.+- ..+.. ...-..+++. ++ ++|+..- ..+.+.++|..+.+=...-+..
T Consensus 220 V~viD~~~~t~~~v~~i~~-----G~~P~~ia~s~~~~pDGk~l~v~n~---------~~~~v~ViD~~t~~~~~~i~~~ 285 (567)
T 1qks_A 220 VNMIDLWMKEPTTVAEIKI-----GSEARSIETSKMEGWEDKYAIAGAY---------WPPQYVIMDGETLEPKKIQSTR 285 (567)
T ss_dssp EEEEETTSSSCCEEEEEEC-----CSEEEEEEECCSTTCTTTEEEEEEE---------ETTEEEEEETTTCCEEEEEECC
T ss_pred EEEEECCCCCCcEeEEEec-----CCCCceeEEccccCCCCCEEEEEEc---------cCCeEEEEECCCCcEEEEEecc
Confidence 9999995 4432 22222 2222233333 33 6666533 2367888897775432221110
Q ss_pred C------CCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEE
Q 006473 229 G------SMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSM 302 (643)
Q Consensus 229 ~------~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~ 302 (643)
. .-.|.+|.....+...+..+++-=. ....++.+|........+... +..+.-|.+
T Consensus 286 ~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~---------------~~g~v~~vd~~~~~~~~v~~i---~~~~~~~d~ 347 (567)
T 1qks_A 286 GMTYDEQEYHPEPRVAAILASHYRPEFIVNVK---------------ETGKILLVDYTDLNNLKTTEI---SAERFLHDG 347 (567)
T ss_dssp EECTTTCCEESCCCEEEEEECSSSSEEEEEET---------------TTTEEEEEETTCSSEEEEEEE---ECCSSEEEE
T ss_pred ccccccccccCCCceEEEEEcCCCCEEEEEec---------------CCCeEEEEecCCCccceeeee---eccccccCc
Confidence 0 0013344443333333223322111 113478888776654444332 334555555
Q ss_pred EEE-CCeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 303 CVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 303 ~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
.+- +++.+++... ..|.|.++|+.+++
T Consensus 348 ~~~pdgr~~~va~~-------------~sn~V~ViD~~t~k 375 (567)
T 1qks_A 348 GLDGSHRYFITAAN-------------ARNKLVVIDTKEGK 375 (567)
T ss_dssp EECTTSCEEEEEEG-------------GGTEEEEEETTTTE
T ss_pred eECCCCCEEEEEeC-------------CCCeEEEEECCCCc
Confidence 544 3443333221 14679999998875
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=89.29 E-value=3.4 Score=46.41 Aligned_cols=113 Identities=9% Similarity=-0.029 Sum_probs=57.7
Q ss_pred cEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC
Q 006473 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (643)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (643)
.++++|+.+++-..+..... ........+.+ +++.++++........ ......+|++|+.+.+...+........
T Consensus 38 ~i~~~d~~~g~~~~~~~~~~-~~~~~v~~~~~SpDg~~l~~~~~~~~~~~--~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 114 (723)
T 1xfd_A 38 TVRLWNVETNTSTVLIEGKK-IESLRAIRYEISPDREYALFSYNVEPIYQ--HSYTGYYVLSKIPHGDPQSLDPPEVSNA 114 (723)
T ss_dssp CEEEBCGGGCCCEEEECTTT-TTTTTCSEEEECTTSSEEEEEESCCCCSS--SCCCSEEEEEESSSCCCEECCCTTCCSC
T ss_pred CEEEEECCCCcEEEEecccc-ccccccceEEECCCCCEEEEEecCcccee--ecceeeEEEEECCCCceEeccCCccccc
Confidence 68888988876655543221 10001122233 5555555543222111 1234789999999887665544211111
Q ss_pred CceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccC
Q 006473 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (643)
Q Consensus 180 Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (643)
+..+....-+++.++|+.. ..|+++|+.+.....+...
T Consensus 115 ~~~~~~~SPdG~~la~~~~----------~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 115 KLQYAGWGPKGQQLIFIFE----------NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp CCSBCCBCSSTTCEEEEET----------TEEEEESSSSSCCEEEECC
T ss_pred cccccEECCCCCEEEEEEC----------CeEEEEECCCCceEEEecC
Confidence 1111111225555555442 3688899888776666543
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.19 E-value=19 Score=35.93 Aligned_cols=104 Identities=4% Similarity=-0.113 Sum_probs=57.2
Q ss_pred CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCC
Q 006473 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEK 267 (643)
Q Consensus 189 ~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~ 267 (643)
.+.+++.|+.+ ..+.+||+.+..-..+... .....-.+++.. ++.+++.|+.++.
T Consensus 138 ~~~~l~s~s~d---------g~i~~wd~~~~~~~~~~~~-----~~~~~i~~~~~~pdg~~lasg~~dg~---------- 193 (343)
T 3lrv_A 138 NTEYFIWADNR---------GTIGFQSYEDDSQYIVHSA-----KSDVEYSSGVLHKDSLLLALYSPDGI---------- 193 (343)
T ss_dssp -CCEEEEEETT---------CCEEEEESSSSCEEEEECC-----CSSCCCCEEEECTTSCEEEEECTTSC----------
T ss_pred CCCEEEEEeCC---------CcEEEEECCCCcEEEEEec-----CCCCceEEEEECCCCCEEEEEcCCCE----------
Confidence 44566667642 4588899887765443322 111112233333 6778888887765
Q ss_pred CceeeeEEEEeCCCCeeE--EeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCCC
Q 006473 268 GIIHSDLWSLDPRTWEWS--KVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (643)
Q Consensus 268 ~~~~~dv~~yd~~t~~W~--~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (643)
+.+||+.+..-. .+.. .....-.++++. ++..++.|+ . +.|.+||+.+.
T Consensus 194 ------i~iwd~~~~~~~~~~~~~----~h~~~v~~l~fs~~g~~l~s~~-~--------------~~v~iwd~~~~ 245 (343)
T 3lrv_A 194 ------LDVYNLSSPDQASSRFPV----DEEAKIKEVKFADNGYWMVVEC-D--------------QTVVCFDLRKD 245 (343)
T ss_dssp ------EEEEESSCTTSCCEECCC----CTTSCEEEEEECTTSSEEEEEE-S--------------SBEEEEETTSS
T ss_pred ------EEEEECCCCCCCccEEec----cCCCCEEEEEEeCCCCEEEEEe-C--------------CeEEEEEcCCC
Confidence 788898776532 2211 011122233333 566666666 2 24899998764
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=89.09 E-value=11 Score=37.68 Aligned_cols=112 Identities=9% Similarity=-0.075 Sum_probs=57.9
Q ss_pred ccEEEEECCCCcEEEecCCCCC----------------CCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEE
Q 006473 101 GDLYRYDVEKQEWKVISSPNSP----------------PPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLD 162 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P----------------~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD 162 (643)
+.+++|++.+..++.+...... ....-++++.. ++.|||.... ..+++||
T Consensus 40 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~------------~~i~~~d 107 (322)
T 2fp8_A 40 GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY------------YHLSVVG 107 (322)
T ss_dssp SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT------------TEEEEEC
T ss_pred CeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC------------CCEEEEe
Confidence 4789999988877755421100 00112445554 5789987431 3478899
Q ss_pred CCCCcEEEeccCCC-CCCCceeEEEEE--CCEEEEEeeeecCCC-c-------eeeeccEEEEEcCCCceEEe
Q 006473 163 LKTNQWEQLNLKGC-PSPRSGHRMVLY--KHKIIVFGGFYDTLR-E-------VRYYNDLYVFDLDQFKWQEI 224 (643)
Q Consensus 163 ~~t~~W~~~~~~g~-P~~Rs~h~~~~~--~~~lyvfGG~~~~~~-~-------~~~~~dv~~yD~~t~~W~~v 224 (643)
+.++..+.+..... .....-+.+++- ++.||+.-....... . ......|++||+.+.....+
T Consensus 108 ~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~ 180 (322)
T 2fp8_A 108 SEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL 180 (322)
T ss_dssp TTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEE
T ss_pred CCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEe
Confidence 88776655532110 011122334443 467887532110000 0 00125699999987765544
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=88.98 E-value=18 Score=35.44 Aligned_cols=111 Identities=12% Similarity=0.082 Sum_probs=55.3
Q ss_pred eEEEEeccCCCE-EEEEcceecCCCCceeeccEEEEEC-CCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCC
Q 006473 72 CSLNINPLKETE-LILYGGEFYNGNKTYVYGDLYRYDV-EKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQ 149 (643)
Q Consensus 72 ~s~~~~~~~~~~-lyvfGG~~~~g~~~~~~ndv~~yd~-~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~ 149 (643)
.++...| ++. +++.|+. -+.+++||+ .+.....+.... ....-.+++...+.+++.|+..
T Consensus 60 ~~~~~~~--~~~~~l~~~~~---------dg~i~~wd~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~l~s~~~d----- 121 (342)
T 1yfq_A 60 LCCNFID--NTDLQIYVGTV---------QGEILKVDLIGSPSFQALTNNE--ANLGICRICKYGDDKLIAASWD----- 121 (342)
T ss_dssp EEEEEEE--SSSEEEEEEET---------TSCEEEECSSSSSSEEECBSCC--CCSCEEEEEEETTTEEEEEETT-----
T ss_pred EEEEECC--CCCcEEEEEcC---------CCeEEEEEeccCCceEeccccC--CCCceEEEEeCCCCEEEEEcCC-----
Confidence 3444554 566 7777772 247889999 888776654310 1111222233335555566542
Q ss_pred CcceecCeEEEEECCCCc-------EEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCC
Q 006473 150 ERFHHYKDFWMLDLKTNQ-------WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (643)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~-------W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t 218 (643)
..+.+||+.+.. ...+.. ......-.+++...+. ++.|+. -..+.+||+.+
T Consensus 122 ------~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~-l~~~~~---------d~~i~i~d~~~ 179 (342)
T 1yfq_A 122 ------GLIEVIDPRNYGDGVIAVKNLNSNN--TKVKNKIFTMDTNSSR-LIVGMN---------NSQVQWFRLPL 179 (342)
T ss_dssp ------SEEEEECHHHHTTBCEEEEESCSSS--SSSCCCEEEEEECSSE-EEEEES---------TTEEEEEESSC
T ss_pred ------CeEEEEcccccccccccccCCeeeE--EeeCCceEEEEecCCc-EEEEeC---------CCeEEEEECCc
Confidence 356677765300 111211 1212222233334555 555543 24688899877
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=88.80 E-value=3.4 Score=41.35 Aligned_cols=112 Identities=10% Similarity=0.075 Sum_probs=55.1
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE---CCEEEEEeCccCCCCCCcceecCe
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQERFHHYKD 157 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~---~~~iyvfGG~~~~~~~~~~~~~~d 157 (643)
++.+++.|+. + +.+.+||+.++....+..... ....-.+++.. ++.+++.|+.. ..
T Consensus 24 ~g~~lasgs~--D-------~~v~lwd~~~~~~~~~~~l~g-H~~~V~~v~~~~~~~~~~l~s~s~D-----------~~ 82 (316)
T 3bg1_A 24 YGTRLATCSS--D-------RSVKIFDVRNGGQILIADLRG-HEGPVWQVAWAHPMYGNILASCSYD-----------RK 82 (316)
T ss_dssp GGCEEEEEET--T-------TEEEEEEEETTEEEEEEEEEC-CSSCEEEEEECCGGGSSCEEEEETT-----------SC
T ss_pred CCCEEEEEeC--C-------CeEEEEEecCCCcEEEEEEcC-CCccEEEEEeCCCCCCCEEEEEECC-----------CE
Confidence 5677777772 2 357778877765432221100 01111122221 25667777643 34
Q ss_pred EEEEECCCCcEEEeccCCCCCCCceeEEEEE--C--CEEEEEeeeecCCCceeeeccEEEEEcCCC-ceEEe
Q 006473 158 FWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--K--HKIIVFGGFYDTLREVRYYNDLYVFDLDQF-KWQEI 224 (643)
Q Consensus 158 v~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~--~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~-~W~~v 224 (643)
+.++|+.+..|..+.. .......-.++.+ + +.+++.|+.+ ..+.+||+... .|...
T Consensus 83 v~iWd~~~~~~~~~~~--~~~h~~~V~~v~~~p~~~g~~lasgs~D---------~~i~lwd~~~~~~~~~~ 143 (316)
T 3bg1_A 83 VIIWREENGTWEKSHE--HAGHDSSVNSVCWAPHDYGLILACGSSD---------GAISLLTYTGEGQWEVK 143 (316)
T ss_dssp EEEECCSSSCCCEEEE--ECCCSSCCCEEEECCTTTCSCEEEECSS---------SCEEEEEECSSSCEEEC
T ss_pred EEEEECCCCcceEEEE--ccCCCCceEEEEECCCCCCcEEEEEcCC---------CCEEEEecCCCCCccee
Confidence 7788888877654432 1111111122333 2 4566666653 34666777654 46543
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=88.77 E-value=9.7 Score=45.78 Aligned_cols=139 Identities=12% Similarity=0.018 Sum_probs=70.0
Q ss_pred EEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCc
Q 006473 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 74 ~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~ 151 (643)
+++.| ++.+++.||. -+.+.+||+.+.+-...-... .....++.+ ++.+++.|+..
T Consensus 621 ~~~s~--~~~~l~s~~~---------d~~i~vw~~~~~~~~~~~~~h----~~~v~~~~~s~~~~~l~s~~~d------- 678 (1249)
T 3sfz_A 621 ACFSQ--DGQRIASCGA---------DKTLQVFKAETGEKLLDIKAH----EDEVLCCAFSSDDSYIATCSAD------- 678 (1249)
T ss_dssp EEECT--TSSEEEEEET---------TSCEEEEETTTCCEEEEECCC----SSCEEEEEECTTSSEEEEEETT-------
T ss_pred EEECC--CCCEEEEEeC---------CCeEEEEECCCCCEEEEeccC----CCCEEEEEEecCCCEEEEEeCC-------
Confidence 34444 5777777772 246889999887654322211 112222333 55666666642
Q ss_pred ceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE----CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccC
Q 006473 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY----KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~----~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (643)
..+.+||+.+++....-. .+ ...-.++.+ ++.+++.|+. -..+.+||+.+......-..
T Consensus 679 ----~~v~vwd~~~~~~~~~~~--~~--~~~v~~~~~~~~~~~~~l~sg~~---------d~~v~vwd~~~~~~~~~~~~ 741 (1249)
T 3sfz_A 679 ----KKVKIWDSATGKLVHTYD--EH--SEQVNCCHFTNKSNHLLLATGSN---------DFFLKLWDLNQKECRNTMFG 741 (1249)
T ss_dssp ----SEEEEEETTTCCEEEEEE--CC--SSCEEEEEECSSSSCCEEEEEET---------TSCEEEEETTSSSEEEEECC
T ss_pred ----CeEEEEECCCCceEEEEc--CC--CCcEEEEEEecCCCceEEEEEeC---------CCeEEEEECCCcchhheecC
Confidence 458889998876543322 11 111222333 2334555543 24588889887654332211
Q ss_pred CCCCCCCCccceeEEEe-CCEEEEEcCCCCC
Q 006473 228 FGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (643)
Q Consensus 228 ~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~ 257 (643)
. ..+ -.+++.. ++.+++.|+.++.
T Consensus 742 h----~~~--v~~~~~sp~~~~l~s~s~dg~ 766 (1249)
T 3sfz_A 742 H----TNS--VNHCRFSPDDELLASCSADGT 766 (1249)
T ss_dssp C----SSC--EEEEEECSSTTEEEEEESSSE
T ss_pred C----CCC--EEEEEEecCCCEEEEEECCCe
Confidence 0 111 1122222 5667777776554
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=88.73 E-value=2.7 Score=41.79 Aligned_cols=68 Identities=16% Similarity=0.217 Sum_probs=40.5
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccE
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv 211 (643)
++.+|+.++. -+.++++|+.+++....-. .+....-+.+++. ++.+|+.+.. ...+
T Consensus 10 ~~~~~v~~~~-----------~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~~~v~~~~---------~~~i 67 (349)
T 1jmx_B 10 GHEYMIVTNY-----------PNNLHVVDVASDTVYKSCV--MPDKFGPGTAMMAPDNRTAYVLNNH---------YGDI 67 (349)
T ss_dssp TCEEEEEEET-----------TTEEEEEETTTTEEEEEEE--CSSCCSSCEEEECTTSSEEEEEETT---------TTEE
T ss_pred CCEEEEEeCC-----------CCeEEEEECCCCcEEEEEe--cCCCCCCceeEECCCCCEEEEEeCC---------CCcE
Confidence 5678887764 2578999999887654322 1211112333333 3467776532 3569
Q ss_pred EEEEcCCCceEE
Q 006473 212 YVFDLDQFKWQE 223 (643)
Q Consensus 212 ~~yD~~t~~W~~ 223 (643)
++||+.+.+...
T Consensus 68 ~~~d~~t~~~~~ 79 (349)
T 1jmx_B 68 YGIDLDTCKNTF 79 (349)
T ss_dssp EEEETTTTEEEE
T ss_pred EEEeCCCCcEEE
Confidence 999998876543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=88.64 E-value=19 Score=35.27 Aligned_cols=181 Identities=8% Similarity=-0.021 Sum_probs=88.4
Q ss_pred CceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCC-cEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCC
Q 006473 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ-EWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSP 147 (643)
Q Consensus 70 ~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~-~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~ 147 (643)
..|.+.+.| +++||+.+. +.++.||+... .|+.-. +.....+++... ++.+++.....
T Consensus 38 ~~~~~~~~p--dG~ilvs~~-----------~~V~~~d~~G~~~W~~~~----~~~~~~~~~~~~~dG~~lv~~~~~--- 97 (276)
T 3no2_A 38 ECNSVAATK--AGEILFSYS-----------KGAKMITRDGRELWNIAA----PAGCEMQTARILPDGNALVAWCGH--- 97 (276)
T ss_dssp CCCEEEECT--TSCEEEECB-----------SEEEEECTTSCEEEEEEC----CTTCEEEEEEECTTSCEEEEEEST---
T ss_pred CCcCeEECC--CCCEEEeCC-----------CCEEEECCCCCEEEEEcC----CCCccccccEECCCCCEEEEecCC---
Confidence 345666666 677887332 35899999332 366432 111223444444 55555553310
Q ss_pred CCCcceecCeEEEEECCCCc-EEEeccCCCCCC--CceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCC-CceEE
Q 006473 148 NQERFHHYKDFWMLDLKTNQ-WEQLNLKGCPSP--RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FKWQE 223 (643)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~-W~~~~~~g~P~~--Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t-~~W~~ 223 (643)
...++.+|+.... |+.....+.+.+ .........++.+++.... ...|.+||+.- ..|+.
T Consensus 98 -------~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~---------~~~v~~~d~~G~~~w~~ 161 (276)
T 3no2_A 98 -------PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA---------TSEVREIAPNGQLLNSV 161 (276)
T ss_dssp -------TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT---------TTEEEEECTTSCEEEEE
T ss_pred -------CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC---------CCEEEEECCCCCEEEEE
Confidence 1357778874442 443211111111 1111222334555443321 24688898872 23654
Q ss_pred eccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCC--CeeEEeccCCCCCCCce--
Q 006473 224 IKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT--WEWSKVKKIGMPPGPRA-- 298 (643)
Q Consensus 224 v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t--~~W~~l~~~g~~P~~R~-- 298 (643)
-... .+ +++... ++.++|.+.... .++.||+.+ ..|+.-... .+..|.
T Consensus 162 ~~~~------~~---~~~~~~~~g~~~v~~~~~~----------------~v~~~d~~tG~~~w~~~~~~--~~~~~l~~ 214 (276)
T 3no2_A 162 KLSG------TP---FSSAFLDNGDCLVACGDAH----------------CFVQLNLESNRIVRRVNAND--IEGVQLFF 214 (276)
T ss_dssp ECSS------CC---CEEEECTTSCEEEECBTTS----------------EEEEECTTTCCEEEEEEGGG--SBSCCCSE
T ss_pred ECCC------Cc---cceeEcCCCCEEEEeCCCC----------------eEEEEeCcCCcEEEEecCCC--CCCccccc
Confidence 3321 11 123333 677777765432 288999874 467765321 121122
Q ss_pred eeEEEEE-CCeEEEec
Q 006473 299 GFSMCVH-KKRALLFG 313 (643)
Q Consensus 299 g~s~~~~-~~~iyvfG 313 (643)
-.++++. ++.+||..
T Consensus 215 ~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 215 VAQLFPLQNGGLYICN 230 (276)
T ss_dssp EEEEEECTTSCEEEEE
T ss_pred cccceEcCCCCEEEEe
Confidence 2334444 78888876
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=88.29 E-value=17 Score=35.58 Aligned_cols=72 Identities=11% Similarity=0.084 Sum_probs=37.6
Q ss_pred CEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCC--CeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCc
Q 006473 246 DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT--WEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKG 322 (643)
Q Consensus 246 ~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t--~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~ 322 (643)
+.+++.|+.++. +.++|+.+ ..|........ .....-.+++.. ++.+++.||..
T Consensus 219 ~~~las~s~D~~----------------v~iWd~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~las~~~D------ 275 (297)
T 2pm7_B 219 RSYMASVSQDRT----------------CIIWTQDNEQGPWKKTLLKEE-KFPDVLWRASWSLSGNVLALSGGD------ 275 (297)
T ss_dssp SEEEEEEETTSC----------------EEEEEESSTTSCCEEEESSSS-CCSSCEEEEEECSSSCCEEEEETT------
T ss_pred ceEEEEEECCCc----------------EEEEEeCCCCCccceeeeecc-cCCCcEEEEEECCCCCEEEEEcCC------
Confidence 478888887765 55555543 44654322100 111222334443 57777777753
Q ss_pred cccccccCCcEEEEECC-CCcEEEeEe
Q 006473 323 DVIMSLFLNELYGFQLD-NHRWYPLEL 348 (643)
Q Consensus 323 ~~~~~~~~ndl~~yd~~-t~~W~~l~~ 348 (643)
+.|.+|++. .+.|..+..
T Consensus 276 --------~~v~lw~~~~~g~w~~~~~ 294 (297)
T 2pm7_B 276 --------NKVTLWKENLEGKWEPAGE 294 (297)
T ss_dssp --------SCEEEEEECTTSCEEEC--
T ss_pred --------CcEEEEEECCCCcEEeccc
Confidence 236777765 457887653
|
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A | Back alignment and structure |
|---|
Probab=88.23 E-value=13 Score=38.89 Aligned_cols=17 Identities=12% Similarity=0.337 Sum_probs=12.8
Q ss_pred eeeEEEEE-CCeEEEecc
Q 006473 298 AGFSMCVH-KKRALLFGG 314 (643)
Q Consensus 298 ~g~s~~~~-~~~iyvfGG 314 (643)
..|++++. ++.+|.+|-
T Consensus 338 ~~hs~alt~~G~v~~wG~ 355 (406)
T 4d9s_A 338 WRHTLAVTERNNVFAWGR 355 (406)
T ss_dssp SSEEEEEETTSCEEEEEC
T ss_pred CCeEEEEeCCCCEEEecC
Confidence 45777777 688999984
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=88.19 E-value=28 Score=37.72 Aligned_cols=138 Identities=9% Similarity=0.025 Sum_probs=71.1
Q ss_pred CeEEEEEC--CCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCC
Q 006473 156 KDFWMLDL--KTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (643)
Q Consensus 156 ~dv~~yD~--~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~ 232 (643)
..+|.+++ ....- .+.. .+ .. ...+... ++.+++..+.. +.+.+||+.+..-..+...
T Consensus 90 ~~l~~~~~~~~g~~~-~l~~--~~-~~-~~~~~s~dg~~~~~~s~~~---------~~~~l~d~~~g~~~~l~~~----- 150 (582)
T 3o4h_A 90 HALFKVNTSRPGEEQ-RLEA--VK-PM-RILSGVDTGEAVVFTGATE---------DRVALYALDGGGLRELARL----- 150 (582)
T ss_dssp EEEEEEETTSTTCCE-ECTT--SC-SB-EEEEEEECSSCEEEEEECS---------SCEEEEEEETTEEEEEEEE-----
T ss_pred eEEEEEeccCCCccc-cccC--CC-Cc-eeeeeCCCCCeEEEEecCC---------CCceEEEccCCcEEEeecC-----
Confidence 46888887 44332 3322 11 11 1223333 44555555432 2334678888877666544
Q ss_pred CCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEE
Q 006473 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALL 311 (643)
Q Consensus 233 P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyv 311 (643)
+. ....+.. +++.+++++.... -...+|++|+.+..+..+... .....+.+.- +++.++
T Consensus 151 ~~--~~~~~sp-DG~~la~~~~~~~------------~~~~i~~~d~~~g~~~~l~~~-----~~~~~~~~~SpDG~~l~ 210 (582)
T 3o4h_A 151 PG--FGFVSDI-RGDLIAGLGFFGG------------GRVSLFTSNLSSGGLRVFDSG-----EGSFSSASISPGMKVTA 210 (582)
T ss_dssp SS--CEEEEEE-ETTEEEEEEEEET------------TEEEEEEEETTTCCCEEECCS-----SCEEEEEEECTTSCEEE
T ss_pred CC--ceEEECC-CCCEEEEEEEcCC------------CCeEEEEEcCCCCCceEeecC-----CCccccceECCCCCEEE
Confidence 22 2222223 4444454443321 123599999999888877432 1112233333 555555
Q ss_pred eccccccccCccccccccCCcEEEEECCCCcEE
Q 006473 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (643)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (643)
.+...+ ...|++||+.++...
T Consensus 211 ~~~~~~------------~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 211 GLETAR------------EARLVTVDPRDGSVE 231 (582)
T ss_dssp EEECSS------------CEEEEEECTTTCCEE
T ss_pred EccCCC------------eeEEEEEcCCCCcEE
Confidence 322211 246999999988876
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=88.13 E-value=30 Score=38.81 Aligned_cols=149 Identities=12% Similarity=0.028 Sum_probs=82.4
Q ss_pred CeEEEEECCCC--cEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCC---ceEEeccCCCC
Q 006473 156 KDFWMLDLKTN--QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF---KWQEIKPRFGS 230 (643)
Q Consensus 156 ~dv~~yD~~t~--~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~---~W~~v~~~~~~ 230 (643)
+.+|.+|+.+. .|..+.. +...........++.||+...... ....|+.+|+.+. .|+.+.+..
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~---~~~~~~~~~~~~g~~l~~~t~~~~------~~~~l~~~d~~~~~~~~~~~l~~~~-- 327 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQG---DLDADVSLVDNKGSTLYLLTNRDA------PNRRLVTVDAANPGPAHWRDLIPER-- 327 (693)
T ss_dssp CEEEEEETTSTTCCCEEEEC---SSSSCEEEEEEETTEEEEEECTTC------TTCEEEEEETTSCCGGGCEEEECCC--
T ss_pred cEEEEEECCCCCCceEEEeC---CCCceEEEEeccCCEEEEEECCCC------CCCEEEEEeCCCCCccccEEEecCC--
Confidence 68999998776 6877754 111111123345788988865421 1357899998763 488776542
Q ss_pred CCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeE
Q 006473 231 MWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRA 309 (643)
Q Consensus 231 ~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~i 309 (643)
.... .+...++.|++..-.++ ...++++++.......+.. |..........- ++..
T Consensus 328 ---~~~~--~~s~~g~~lv~~~~~~g--------------~~~l~~~d~~g~~~~~l~~----p~~~~~~~~~~~~d~~~ 384 (693)
T 3iuj_A 328 ---QQVL--TVHSGSGYLFAEYMVDA--------------TARVEQFDYEGKRVREVAL----PGLGSVSGFNGKHDDPA 384 (693)
T ss_dssp ---SSCE--EEEEETTEEEEEEEETT--------------EEEEEEECTTSCEEEEECC----SSSSEEEECCCCTTCSC
T ss_pred ---CCEE--EEEEECCEEEEEEEECC--------------eeEEEEEECCCCeeEEeec----CCCceEEeeecCCCCCE
Confidence 1112 45555777766543221 3468899988665555532 221111111111 2332
Q ss_pred EEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 310 yvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
++|...+. .....+|.||+.+..+..+..
T Consensus 385 l~~~~ss~----------~tP~~l~~~d~~~g~~~~l~~ 413 (693)
T 3iuj_A 385 LYFGFENY----------AQPPTLYRFEPKSGAISLYRA 413 (693)
T ss_dssp EEEEEECS----------SSCCEEEEECTTTCCEEEEEC
T ss_pred EEEEecCC----------CCCCEEEEEECCCCeEEEEEe
Confidence 22222111 124579999999988877765
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=87.10 E-value=12 Score=40.66 Aligned_cols=96 Identities=9% Similarity=-0.036 Sum_probs=52.9
Q ss_pred EEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCce
Q 006473 103 LYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSG 182 (643)
Q Consensus 103 v~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~ 182 (643)
+.+||+.+++.+.+.... . ...+. .-+++.+++++..... ...+|++|+.++.+..+... + . .
T Consensus 134 ~~l~d~~~g~~~~l~~~~--~--~~~~~-spDG~~la~~~~~~~~-------~~~i~~~d~~~g~~~~l~~~--~-~-~- 196 (582)
T 3o4h_A 134 VALYALDGGGLRELARLP--G--FGFVS-DIRGDLIAGLGFFGGG-------RVSLFTSNLSSGGLRVFDSG--E-G-S- 196 (582)
T ss_dssp EEEEEEETTEEEEEEEES--S--CEEEE-EEETTEEEEEEEEETT-------EEEEEEEETTTCCCEEECCS--S-C-E-
T ss_pred ceEEEccCCcEEEeecCC--C--ceEEE-CCCCCEEEEEEEcCCC-------CeEEEEEcCCCCCceEeecC--C-C-c-
Confidence 346788888877775422 2 22222 2244444554432211 14599999999998877431 1 1 1
Q ss_pred eEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceE
Q 006473 183 HRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222 (643)
Q Consensus 183 h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~ 222 (643)
.....+ +++.++.+...+ ...|+++|+.+....
T Consensus 197 ~~~~~~SpDG~~l~~~~~~~-------~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 197 FSSASISPGMKVTAGLETAR-------EARLVTVDPRDGSVE 231 (582)
T ss_dssp EEEEEECTTSCEEEEEECSS-------CEEEEEECTTTCCEE
T ss_pred cccceECCCCCEEEEccCCC-------eeEEEEEcCCCCcEE
Confidence 122333 444443332211 247999999988877
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=86.77 E-value=16 Score=40.70 Aligned_cols=124 Identities=12% Similarity=0.146 Sum_probs=66.0
Q ss_pred EEEECCEEEEEeCccCCCCCCcceecCeEEEEEC-CCC--cEEEeccCCC---CCCC---ceeEEEE--ECCE----EEE
Q 006473 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDL-KTN--QWEQLNLKGC---PSPR---SGHRMVL--YKHK----IIV 194 (643)
Q Consensus 130 ~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~-~t~--~W~~~~~~g~---P~~R---s~h~~~~--~~~~----lyv 194 (643)
-++.++.||+.+.. .+.++.||. .+. .|+.-..... +..+ ...+.++ .++. ||+
T Consensus 58 P~v~~g~vyv~~~~-----------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v 126 (599)
T 1w6s_A 58 PLVVDGKMYIHTSF-----------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILK 126 (599)
T ss_dssp CEEETTEEEEECST-----------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEE
T ss_pred cEEECCEEEEEeCC-----------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEE
Confidence 34569999998652 146889998 776 4886433110 0011 1123344 4666 776
Q ss_pred EeeeecCCCceeeeccEEEEEcCCCc--eEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceee
Q 006473 195 FGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHS 272 (643)
Q Consensus 195 fGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~ 272 (643)
... -..|+.+|..+.+ |+.-..... +......+.++.++.||+-.+.... ....
T Consensus 127 ~t~----------dg~l~AlDa~TG~~~W~~~~~~~~---~~~~~~ssP~v~~g~V~vg~~g~e~-----------g~~g 182 (599)
T 1w6s_A 127 TQL----------DGNVAALNAETGETVWKVENSDIK---VGSTLTIAPYVVKDKVIIGSSGAEL-----------GVRG 182 (599)
T ss_dssp ECT----------TSEEEEEETTTCCEEEEEECCCGG---GTCBCCSCCEEETTEEEECCBCGGG-----------TCCC
T ss_pred EcC----------CCEEEEEECCCCCEEEeecCCCCC---ccceeecCCEEECCEEEEEeccccc-----------CCCC
Confidence 422 2468999988765 875432100 0001112234557877654321100 1234
Q ss_pred eEEEEeCCCC--eeEEec
Q 006473 273 DLWSLDPRTW--EWSKVK 288 (643)
Q Consensus 273 dv~~yd~~t~--~W~~l~ 288 (643)
.++.||+.+. .|..-.
T Consensus 183 ~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 183 YLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEEEEETTTCCEEEEEES
T ss_pred eEEEEECCCCcEEEEEcC
Confidence 5889998764 587653
|
| >1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A | Back alignment and structure |
|---|
Probab=86.58 E-value=13 Score=35.69 Aligned_cols=104 Identities=13% Similarity=0.278 Sum_probs=54.8
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCC-cEE--EecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceec
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ-EWK--VISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHY 155 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~-~W~--~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~ 155 (643)
++++|+|=|. .+|+++.... ... .|...-.-.|..--++... ++++|+|-|
T Consensus 40 ~g~~~fFkg~-----------~~Wr~~~~~~~~~~P~~I~~~wp~lp~~IDAA~~~~~~~k~yfFkG------------- 95 (218)
T 1gen_A 40 RGEIFFFKDR-----------FIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAG------------- 95 (218)
T ss_dssp TTEEEEEETT-----------EEEEESSTTSCCEEEEEGGGTCTTSCSCCSEEEEETTTTEEEEEET-------------
T ss_pred CCcEEEEECC-----------EEEEEeCCCCccCCCEEHHHhcCCCCCCccEEEEECCCCEEEEEeC-------------
Confidence 6889999883 4566654432 111 2222110112222233333 689999987
Q ss_pred CeEEEEECCCCc---EEEeccCCCCCCC-ceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCC
Q 006473 156 KDFWMLDLKTNQ---WEQLNLKGCPSPR-SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (643)
Q Consensus 156 ~dv~~yD~~t~~---W~~~~~~g~P~~R-s~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~ 219 (643)
+.+|+|+..+.. =..+...+.|... .-.++..+ ++++|+|-| +..|+||..+.
T Consensus 96 ~~yW~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG-----------~~ywr~d~~~~ 154 (218)
T 1gen_A 96 NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG-----------DKFWRYNEVKK 154 (218)
T ss_dssp TEEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET-----------TEEEEEETTTT
T ss_pred CEEEEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEEC-----------CEEEEEECccc
Confidence 468999853110 0112111334321 22344443 689999977 45889998765
|
| >1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=86.19 E-value=4.6 Score=38.10 Aligned_cols=103 Identities=13% Similarity=0.273 Sum_probs=59.9
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcE-EEecCCCCCCC--ceeeEEEEECCEEEEEeCccCCCCCCcceecCe
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW-KVISSPNSPPP--RSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKD 157 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W-~~l~s~~~P~p--Rs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~d 157 (643)
++++|+|-| +.+|+|+..+..- +.|.....|.. ....++...++++|+|-| +.
T Consensus 64 ~~~~yfFkG-----------~~yw~~~~~~~~~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg-------------~~ 119 (195)
T 1itv_A 64 SKKLFFFSG-----------RQVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG-------------RR 119 (195)
T ss_dssp TCCEEEEET-----------TEEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET-------------TE
T ss_pred CCeEEEEeC-----------CEEEEEcCCccCCCEEeeecccCCCccceeEEEEcCCCeEEEEeC-------------CE
Confidence 578999988 3567777542111 12222223332 233333323689999987 46
Q ss_pred EEEEECCCCcEEE-----ec--cCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 158 FWMLDLKTNQWEQ-----LN--LKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 158 v~~yD~~t~~W~~-----~~--~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
.|+||..+++-.. +. -.|+| ..-.++..+++.+|+|-| +..|+||..+..
T Consensus 120 ywr~d~~~~~~~~gyPr~i~~~w~Gvp--~~idaa~~~~g~~Yffkg-----------~~y~~~~~~~~~ 176 (195)
T 1itv_A 120 LWRFDVKAQMVDPRSASEVDRMFPGVP--LDTHDVFQFREKAYFCQD-----------RFYWRVSSRSEL 176 (195)
T ss_dssp EEEEETTTTEECGGGCEEHHHHSTTSC--SSCSEEEEETTEEEEEET-----------TEEEEEECCTTC
T ss_pred EEEEeCCcccccCCCccChhhcCCCCC--CCCCEEEEeCCeEEEEeC-----------CEEEEEECCccE
Confidence 8999987754211 11 01223 233456667899999977 357888887654
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=86.02 E-value=8.7 Score=40.13 Aligned_cols=63 Identities=11% Similarity=0.153 Sum_probs=32.9
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCc-EEEeccCCCCCCCceeEEEEE---CCEEEEEeeeecCCCceeeec
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYN 209 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~-W~~~~~~g~P~~Rs~h~~~~~---~~~lyvfGG~~~~~~~~~~~~ 209 (643)
++.+++.|+.. ..+.+||+.+.. ...+.. .......-.++.+ +.++++.|+.+ .
T Consensus 243 ~~~~l~s~~~d-----------g~i~i~d~~~~~~~~~~~~--~~~~~~~v~~i~~~p~~~~~l~tg~~d---------g 300 (430)
T 2xyi_A 243 HESLFGSVADD-----------QKLMIWDTRNNNTSKPSHT--VDAHTAEVNCLSFNPYSEFILATGSAD---------K 300 (430)
T ss_dssp CTTEEEEEETT-----------SEEEEEETTCSCSSSCSEE--EECCSSCEEEEEECSSCTTEEEEEETT---------S
T ss_pred CCCEEEEEeCC-----------CeEEEEECCCCCCCcceeE--eecCCCCeEEEEeCCCCCCEEEEEeCC---------C
Confidence 45677776642 468889987652 100000 0011112223333 33578888753 4
Q ss_pred cEEEEEcCC
Q 006473 210 DLYVFDLDQ 218 (643)
Q Consensus 210 dv~~yD~~t 218 (643)
.|.+||+.+
T Consensus 301 ~v~vwd~~~ 309 (430)
T 2xyi_A 301 TVALWDLRN 309 (430)
T ss_dssp EEEEEETTC
T ss_pred eEEEEeCCC
Confidence 588888875
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=85.93 E-value=29 Score=34.33 Aligned_cols=195 Identities=12% Similarity=0.090 Sum_probs=96.2
Q ss_pred eeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCC
Q 006473 99 VYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP 177 (643)
Q Consensus 99 ~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P 177 (643)
....||++++.+++-+.+. ..+..+.. +++.++|....... ....+|++|+.+++...+.. .+
T Consensus 41 ~~~~l~~~d~~~~~~~~l~--------~~~~~~~SpDg~~la~~~~~~~~------~~~~l~~~~~~~g~~~~l~~--~~ 104 (347)
T 2gop_A 41 YENTIVIENLKNNARRFIE--------NATMPRISPDGKKIAFMRANEEK------KVSEIWVADLETLSSKKILE--AK 104 (347)
T ss_dssp EEEEEEEEETTTCCEEEEE--------SCEEEEECTTSSEEEEEEEETTT------TEEEEEEEETTTTEEEEEEE--ES
T ss_pred ccceEEEEeCCCCceEEcc--------cCCCeEECCCCCEEEEEEeccCC------CcceEEEEECCCCceEEEEc--CC
Confidence 4678999999988776661 11122222 34333333321110 12469999999888777654 22
Q ss_pred CCCceeEEEEE--CCEEEEEeeeecC----------------CC--ceeeeccEEEEEcCCCce-EEeccCCCCCCCCCc
Q 006473 178 SPRSGHRMVLY--KHKIIVFGGFYDT----------------LR--EVRYYNDLYVFDLDQFKW-QEIKPRFGSMWPSPR 236 (643)
Q Consensus 178 ~~Rs~h~~~~~--~~~lyvfGG~~~~----------------~~--~~~~~~dv~~yD~~t~~W-~~v~~~~~~~~P~~R 236 (643)
. .....+ +++.++|...... +. .......|+++|+.+... ..+.. +
T Consensus 105 ~----~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~------~--- 171 (347)
T 2gop_A 105 N----IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK------P--- 171 (347)
T ss_dssp E----EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE------E---
T ss_pred C----ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC------C---
Confidence 1 223334 4544444432100 00 000135799999988876 55532 1
Q ss_pred cceeEEEeCCEEEEEcCCCCCCCCccCCCCCCce-eeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccc
Q 006473 237 SGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGII-HSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGV 315 (643)
Q Consensus 237 ~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~-~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~ 315 (643)
....++...+.|++.+..... ..... ...+|.+| +..+..+... .......-+++.++|++.
T Consensus 172 ~~~~~~~spdg~~~~~~~~~~--------~~~~~~~~~l~~~d--~~~~~~l~~~-------~~~~~~spdg~~l~~~~~ 234 (347)
T 2gop_A 172 RFSSGIWHRDKIVVNVPHREI--------IPQYFKFWDIYIWE--DGKEEKMFEK-------VSFYAVDSDGERILLYGK 234 (347)
T ss_dssp TTCEEEEETTEEEEEEECCCS--------SCCSSCCEEEEEEE--TTEEEEEEEE-------ESEEEEEECSSCEEEEEC
T ss_pred CcccccCCCCeEEEEEecccc--------cccccccccEEEeC--CCceEEeccC-------cceeeECCCCCEEEEEEc
Confidence 122333344445555533221 00002 45789999 6677766431 111122446665555553
Q ss_pred cccccCccccccccCCcEEEEECCCCcEEEeE
Q 006473 316 VDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (643)
Q Consensus 316 ~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (643)
.... .......||++| +..+..+.
T Consensus 235 ~~~~------~~~~~~~l~~~d--~~~~~~l~ 258 (347)
T 2gop_A 235 PEKK------YMSEHNKLYIYD--GKEVMGIL 258 (347)
T ss_dssp CSSS------CCCSSCEEEEEC--SSCEEESS
T ss_pred cccC------CccccceEEEEC--CCceEecc
Confidence 2210 011245789998 55655543
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=85.82 E-value=35 Score=38.03 Aligned_cols=52 Identities=15% Similarity=0.072 Sum_probs=28.2
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
..+.+||+.+..-...-. .... .-.++.+ ++.+++.||.+ ..|.+||+.+.+
T Consensus 541 ~~v~vwd~~~~~~~~~~~--~h~~--~v~~v~~spdg~~l~sg~~D---------g~i~iwd~~~~~ 594 (694)
T 3dm0_A 541 KTVKVWNLSNCKLRSTLA--GHTG--YVSTVAVSPDGSLCASGGKD---------GVVLLWDLAEGK 594 (694)
T ss_dssp SCEEEEETTTCCEEEEEC--CCSS--CEEEEEECTTSSEEEEEETT---------SBCEEEETTTTE
T ss_pred CeEEEEECCCCcEEEEEc--CCCC--CEEEEEEeCCCCEEEEEeCC---------CeEEEEECCCCc
Confidence 357788887765433211 1111 1122223 56677777753 357788887764
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=85.74 E-value=9.8 Score=37.83 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=20.3
Q ss_pred CCeEEEeccccccccCccccccccCCcEEEEECC-CCcEEEeEec
Q 006473 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD-NHRWYPLELR 349 (643)
Q Consensus 306 ~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~-t~~W~~l~~~ 349 (643)
++.+++.||.+ ..|.+|++. ...|..+...
T Consensus 273 ~g~~las~~~D--------------~~v~lw~~~~~g~~~~~~~~ 303 (316)
T 3bg1_A 273 TANILAVSGGD--------------NKVTLWKESVDGQWVCISDV 303 (316)
T ss_dssp TTCCEEEEESS--------------SCEEEEEECTTSCEEEEEEC
T ss_pred CCCEEEEEcCC--------------CeEEEEEECCCCcEEEeeec
Confidence 56777777753 347777765 4689888764
|
| >3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A | Back alignment and structure |
|---|
Probab=85.61 E-value=9.1 Score=39.85 Aligned_cols=152 Identities=14% Similarity=0.225 Sum_probs=77.5
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcE--EEecC--CCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCccee
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW--KVISS--PNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHH 154 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W--~~l~s--~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~ 154 (643)
++++|+|=|. .+|+++.....- ..+.. +.+| ..--++... ++.+|+|-|
T Consensus 190 ~g~~~fFkg~-----------~~Wr~~~~~~~~~p~~I~~~wpgLP--~~iDAa~~~~~~g~~~fFkg------------ 244 (365)
T 3ba0_A 190 GNKIFFFKDR-----------FFWLKVSERPKTSVNLISSLWPTLP--SGIEAAYEIEARNQVFLFKD------------ 244 (365)
T ss_dssp TTEEEEEETT-----------EEEECCSSCCCCCEEEHHHHCSSCC--SSCCEEEEEGGGTEEEEEET------------
T ss_pred CCeEEEEeCC-----------EEEEEcCCCccCCccchhhhccCCC--CCccEEEEecCCCEEEEEeC------------
Confidence 6888888773 456665443211 11111 1223 222233333 789999987
Q ss_pred cCeEEEEECCCCc--E-EEeccCCCCCCC-ceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCC
Q 006473 155 YKDFWMLDLKTNQ--W-EQLNLKGCPSPR-SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (643)
Q Consensus 155 ~~dv~~yD~~t~~--W-~~~~~~g~P~~R-s~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (643)
+.+|+|+..... + ..+...|+|..- .--++..+ ++++|+|-| +..|+||..+.+-..--+.+
T Consensus 245 -~~yWr~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG-----------~~yw~yd~~~~~v~~gyPk~ 312 (365)
T 3ba0_A 245 -DKYWLISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVD-----------NQYWRYDERRQMMDPGYPKL 312 (365)
T ss_dssp -TEEEECSTTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEET-----------TEEEEEETTTTEECSSCCCC
T ss_pred -CEEEEEcCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEEC-----------CEEEEEeCCcceecCCCCcc
Confidence 357888654221 1 123322344421 22234444 579999977 46799997654311100000
Q ss_pred C--CCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEe
Q 006473 229 G--SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (643)
Q Consensus 229 ~--~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l 287 (643)
- .-+..+..--+++.. ++.+|+|=|. ..|+||..+.+-..+
T Consensus 313 I~~~f~g~p~~iDaA~~~~~g~~YfFkg~------------------~ywr~d~~~~~v~~~ 356 (365)
T 3ba0_A 313 ITKNFQGIGPKIDAVFYSKNKYYYFFQGS------------------NQFEYDFLLQRITKT 356 (365)
T ss_dssp HHHHSTTCCSSCSEEEEETTTEEEEEETT------------------EEEEEETTTTEEEEE
T ss_pred hhhcCCCCCCccceeeEecCCcEEEEeCC------------------EEEEEECCccEEecc
Confidence 0 000111112233334 8889998663 388999887776553
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=85.59 E-value=21 Score=36.37 Aligned_cols=141 Identities=13% Similarity=0.051 Sum_probs=70.4
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCcee-EEEEE---CCEEEEEeeeecCCCceeeeccEEEEEcCCC--ceEEeccCCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGH-RMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--KWQEIKPRFG 229 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h-~~~~~---~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~--~W~~v~~~~~ 229 (643)
..+.+||+.++.-...-....+...... ..+.+ ++.+++.|+.+ ..+.+||+... .-..+...
T Consensus 180 ~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D---------~~v~~wd~~~~~~~~~~~~~h-- 248 (380)
T 3iz6_a 180 QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD---------TTVRLWDLRITSRAVRTYHGH-- 248 (380)
T ss_dssp SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT---------SCEEEEETTTTCCCCEEECCC--
T ss_pred CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC---------CeEEEEECCCCCcceEEECCc--
Confidence 3577888888765443221112211111 12222 56777778753 35778887532 11111111
Q ss_pred CCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCC--CCCc-eeeEEEEE
Q 006473 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMP--PGPR-AGFSMCVH 305 (643)
Q Consensus 230 ~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~--P~~R-~g~s~~~~ 305 (643)
..+ -.+++.. ++..++.|+.++. +.+||+.+..-...-..... .... .-.++++.
T Consensus 249 ---~~~--v~~v~~~p~~~~l~s~s~D~~----------------i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 307 (380)
T 3iz6_a 249 ---EGD--INSVKFFPDGQRFGTGSDDGT----------------CRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFS 307 (380)
T ss_dssp ---SSC--CCEEEECTTSSEEEEECSSSC----------------EEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEEC
T ss_pred ---CCC--eEEEEEecCCCeEEEEcCCCe----------------EEEEECCCCcEEEEecccccccccccCceEEEEEC
Confidence 011 1122222 6678888888765 77888877654332211000 0001 11233433
Q ss_pred -CCeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 306 -~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
++++++.|+.+ ..|++||+.+..
T Consensus 308 ~~g~~l~~g~~d--------------g~i~vwd~~~~~ 331 (380)
T 3iz6_a 308 ISGRLLFAGYSN--------------GDCYVWDTLLAE 331 (380)
T ss_dssp SSSSEEEEECTT--------------SCEEEEETTTCC
T ss_pred CCCCEEEEEECC--------------CCEEEEECCCCc
Confidence 57777777643 358999987654
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=85.52 E-value=26 Score=35.65 Aligned_cols=101 Identities=11% Similarity=-0.002 Sum_probs=51.2
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccE
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv 211 (643)
++..++.++..... ...++.++.....+..............-.++.+ ++++++.|+.+ ..|
T Consensus 230 dg~~l~~~s~d~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D---------~~V 293 (365)
T 4h5i_A 230 DDTVLIAASLKKGK-------GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASND---------NSI 293 (365)
T ss_dssp TTEEEEEEEESSSC-------CEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETT---------SCE
T ss_pred CCCEEEEEecCCcc-------eeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCC---------CEE
Confidence 67777777654321 1246677776665543322111111111222333 67777888753 458
Q ss_pred EEEEcCCCceEEeccCCCCCCCCCccc--eeEEEe-CCEEEEEcCCCCC
Q 006473 212 YVFDLDQFKWQEIKPRFGSMWPSPRSG--FQFFVY-QDEVFLYGGYSKE 257 (643)
Q Consensus 212 ~~yD~~t~~W~~v~~~~~~~~P~~R~~--~s~~~~-~~~iyv~GG~~~~ 257 (643)
.+||+.+.+ .+... ..+..+ .+++.. ++.+++.|+.++.
T Consensus 294 ~iwd~~~~~--~~~~~-----~~gH~~~V~~v~fSpdg~~laS~S~D~t 335 (365)
T 4h5i_A 294 ALVKLKDLS--MSKIF-----KQAHSFAITEVTISPDSTYVASVSAANT 335 (365)
T ss_dssp EEEETTTTE--EEEEE-----TTSSSSCEEEEEECTTSCEEEEEETTSE
T ss_pred EEEECCCCc--EEEEe-----cCcccCCEEEEEECCCCCEEEEEeCCCe
Confidence 889988764 22221 111111 122222 7778888887654
|
| >3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.19 E-value=20 Score=33.65 Aligned_cols=101 Identities=18% Similarity=0.301 Sum_probs=54.0
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCc---EEEecC--CCCCCCceeeEEEE-ECCEEEEEeCccCCCCCCccee
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE---WKVISS--PNSPPPRSAHQAVS-WKNYLYIFGGEFTSPNQERFHH 154 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~---W~~l~s--~~~P~pRs~ha~~~-~~~~iyvfGG~~~~~~~~~~~~ 154 (643)
++++|+|-| +.+|+++...-. =+.|.. +.+|. .--+++. .++++|+|-|
T Consensus 15 ~g~~~fFkg-----------~~~w~~~~~~~~~gyP~~I~~~w~glP~--~iDAa~~~~~g~~yfFkg------------ 69 (196)
T 3c7x_A 15 RGEMFVFKE-----------RWFWRVRNNQVMDGYPMPIGQFWRGLPA--SINTAYERKDGKFVFFKG------------ 69 (196)
T ss_dssp TTEEEEEET-----------TEEEEEETTEECTTCSEEHHHHSTTCCS--SCCEEEECTTSCEEEEET------------
T ss_pred CCEEEEEEC-----------CEEEEEECCccCCCCceEhhHhccCCCC--CccEEEEeCCCcEEEecC------------
Confidence 689999998 367777543100 011211 12333 2222222 3688999987
Q ss_pred cCeEEEEECCCCcE---EEeccC--CCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCC
Q 006473 155 YKDFWMLDLKTNQW---EQLNLK--GCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (643)
Q Consensus 155 ~~dv~~yD~~t~~W---~~~~~~--g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~ 219 (643)
+.+|+|+..+... ..+... ++|... --++..+ ++++|+|-| +..|+||..+.
T Consensus 70 -~~yw~~~~~~~~~gyPk~I~~~~~glP~~~-IDAA~~~~~~g~~yfFkG-----------~~yw~yd~~~~ 128 (196)
T 3c7x_A 70 -DKHWVFDEASLEPGYPKHIKELGRGLPTDK-IDAALFWMPNGKTYFFRG-----------NKYYRFNEELR 128 (196)
T ss_dssp -TEEEEEETTEECTTCSEEGGGTCBSCCSSC-CSEEEEETTTTEEEEEET-----------TEEEEEETTTT
T ss_pred -CEEEEEeCCcccCCCCeEhhhcCCCCCCCc-ccEEEEEccCCEEEEEEC-----------CEEEEEeCCcc
Confidence 4579998642110 122221 134222 2233434 589999977 35789998764
|
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A | Back alignment and structure |
|---|
Probab=85.15 E-value=37 Score=35.39 Aligned_cols=17 Identities=12% Similarity=0.116 Sum_probs=12.5
Q ss_pred eeeEEEEE-CCeEEEecc
Q 006473 298 AGFSMCVH-KKRALLFGG 314 (643)
Q Consensus 298 ~g~s~~~~-~~~iyvfGG 314 (643)
..|++++. ++.+|.+|-
T Consensus 286 ~~hs~alt~~G~v~~wG~ 303 (406)
T 4d9s_A 286 WRHTMALTSDGKLYGWGW 303 (406)
T ss_dssp SSEEEEEETTSCEEEEEC
T ss_pred CCEEEEEcCCCeEEEeeC
Confidence 35777776 678999984
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.98 E-value=31 Score=33.90 Aligned_cols=105 Identities=12% Similarity=0.074 Sum_probs=55.1
Q ss_pred CEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEE
Q 006473 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWM 160 (643)
Q Consensus 82 ~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~ 160 (643)
+.+++.|+. + +.+.+||+.+.......... .....-.+++.. ++.+++.|+.. ..+.+
T Consensus 54 g~~l~~~~~--d-------g~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d-----------g~v~i 112 (368)
T 3mmy_A 54 GNFLIAGSW--A-------NDVRCWEVQDSGQTIPKAQQ-MHTGPVLDVCWSDDGSKVFTASCD-----------KTAKM 112 (368)
T ss_dssp SEEEEEEET--T-------SEEEEEEECTTSCEEEEEEE-ECSSCEEEEEECTTSSEEEEEETT-----------SEEEE
T ss_pred ceEEEEECC--C-------CcEEEEEcCCCCceeEEEec-cccCCEEEEEECcCCCEEEEEcCC-----------CcEEE
Confidence 478888873 2 36788888763222111000 011111222222 45566666542 46888
Q ss_pred EECCCCcEEEeccCCCCCCCceeEEEE---ECCEEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 161 LDLKTNQWEQLNLKGCPSPRSGHRMVL---YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rs~h~~~~---~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
||+.+.....+.. ... .-.+++. .++.+++.|+.+ ..+.+||+.+.+
T Consensus 113 wd~~~~~~~~~~~--~~~--~v~~~~~~~~~~~~~l~~~~~d---------g~i~vwd~~~~~ 162 (368)
T 3mmy_A 113 WDLSSNQAIQIAQ--HDA--PVKTIHWIKAPNYSCVMTGSWD---------KTLKFWDTRSSN 162 (368)
T ss_dssp EETTTTEEEEEEE--CSS--CEEEEEEEECSSCEEEEEEETT---------SEEEEECSSCSS
T ss_pred EEcCCCCceeecc--ccC--ceEEEEEEeCCCCCEEEEccCC---------CcEEEEECCCCc
Confidence 9998887665432 111 1122332 256777777742 458888887654
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=84.29 E-value=32 Score=33.56 Aligned_cols=90 Identities=12% Similarity=0.286 Sum_probs=44.1
Q ss_pred ccEEEEECC-CCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCC-cEEEeccCCCC
Q 006473 101 GDLYRYDVE-KQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN-QWEQLNLKGCP 177 (643)
Q Consensus 101 ndv~~yd~~-~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~-~W~~~~~~g~P 177 (643)
+.+++||+. ...|...... + ...+.+.. ++.||+.. . -..+++||+... .|.....
T Consensus 117 ~~l~~~d~~g~~~~~~~~~~----~-~~~~~~~~~~g~l~vgt-~-----------~~~l~~~d~~g~~~~~~~~~---- 175 (330)
T 3hxj_A 117 GHLYAINTDGTEKWRFKTKK----A-IYATPIVSEDGTIYVGS-N-----------DNYLYAINPDGTEKWRFKTN---- 175 (330)
T ss_dssp SEEEEECTTSCEEEEEECSS----C-CCSCCEECTTSCEEEEC-T-----------TSEEEEECTTSCEEEEEECS----
T ss_pred CEEEEEcCCCCEEEEEcCCC----c-eeeeeEEcCCCEEEEEc-C-----------CCEEEEECCCCCEeEEEecC----
Confidence 368889887 3356654221 1 12222333 56676632 1 145888888722 3554321
Q ss_pred CCCceeEEEE-ECCEEEEEeeeecCCCceeeeccEEEEEcCC-CceEEe
Q 006473 178 SPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FKWQEI 224 (643)
Q Consensus 178 ~~Rs~h~~~~-~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t-~~W~~v 224 (643)
... ..+++. -++.||+-. ..+++||... ..|...
T Consensus 176 ~~~-~~~~~~d~~g~l~v~t------------~~l~~~d~~g~~~~~~~ 211 (330)
T 3hxj_A 176 DAI-TSAASIGKDGTIYFGS------------DKVYAINPDGTEKWNFY 211 (330)
T ss_dssp SCC-CSCCEECTTCCEEEES------------SSEEEECTTSCEEEEEC
T ss_pred CCc-eeeeEEcCCCEEEEEe------------CEEEEECCCCcEEEEEc
Confidence 111 122333 256676642 3477888432 235543
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.19 E-value=19 Score=37.39 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=12.8
Q ss_pred ceEEEEeccCCCEEEEEcc
Q 006473 71 NCSLNINPLKETELILYGG 89 (643)
Q Consensus 71 ~~s~~~~~~~~~~lyvfGG 89 (643)
.|++++.. +++||.+|-
T Consensus 117 ~h~~al~~--~G~v~~wG~ 133 (389)
T 3kci_A 117 KHCLALSS--EGEVYSWGE 133 (389)
T ss_dssp SEEEEEET--TSCEEEEEC
T ss_pred CeEEEEcC--CCCEEEEeC
Confidence 57766664 789999995
|
| >1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A* | Back alignment and structure |
|---|
Probab=83.67 E-value=14 Score=39.70 Aligned_cols=148 Identities=16% Similarity=0.290 Sum_probs=77.5
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEE--ecC--CCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCccee
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKV--ISS--PNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHH 154 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~--l~s--~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~ 154 (643)
++++|+|=|. .+|+++.....+.. |.. +.+| ..--++... ++.+|+|=|
T Consensus 272 ~ge~y~Fkg~-----------~~wr~~~~~~~~~p~~I~~~Wp~LP--~~iDAa~~~~~~g~~~fFKg------------ 326 (450)
T 1su3_A 272 RGEVMFFKDR-----------FYMRTNPFYPEVELNFISVFWPQLP--NGLEAAYEFADRDEVRFFKG------------ 326 (450)
T ss_dssp TTEEEEEETT-----------EEEECCTTSSSCEEEEGGGTCTTSC--SSCCEEEEEGGGTEEEEEET------------
T ss_pred CCeEEEEeCC-----------EEEEEcCCCCcccceehhHhccCCC--CCeeEEEEEcCCCeEEEEeC------------
Confidence 6899999884 45666655443332 211 1222 222233333 689999987
Q ss_pred cCeEEEEECCCC--cE-EEec-cCCCCCCCcee-EEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCce-----E
Q 006473 155 YKDFWMLDLKTN--QW-EQLN-LKGCPSPRSGH-RMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW-----Q 222 (643)
Q Consensus 155 ~~dv~~yD~~t~--~W-~~~~-~~g~P~~Rs~h-~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W-----~ 222 (643)
+.+|+|+..+- .+ ..+. ..+.|..-.+- ++..+ ++++|+|-| +..|+||..+.+- .
T Consensus 327 -~~~W~~~~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG-----------~~yw~yd~~~~~~~~gYPk 394 (450)
T 1su3_A 327 -NKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA-----------NKYWRYDEYKRSMDPGYPK 394 (450)
T ss_dssp -TEEEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET-----------TEEEEEETTTTEECSSCSE
T ss_pred -CEEEEecCCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeC-----------CEEEEEeCCCccccCCCCc
Confidence 45788875321 01 1121 11233321222 33344 589999977 4689998764321 1
Q ss_pred EeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEE
Q 006473 223 EIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (643)
Q Consensus 223 ~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (643)
.|.....+. | .... +++..++.+|+|-|. ..|+||..+.+-..
T Consensus 395 ~I~~~fpgi-p-~~iD-AA~~~~g~~YFFkg~------------------~ywr~d~~~~~v~~ 437 (450)
T 1su3_A 395 MIAHDFPGI-G-HKVD-AVFMKDGFFYFFHGT------------------RQYKFDPKTKRILT 437 (450)
T ss_dssp EHHHHSTTS-C-SCCS-EEEEETTEEEEEETT------------------EEEEEETTTTEEEE
T ss_pred chhhcCCCC-C-CCcc-EEEEcCCeEEEEeCC------------------EEEEEECCcceEec
Confidence 111110111 2 1222 333458899998764 37899987766544
|
| >3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* | Back alignment and structure |
|---|
Probab=83.53 E-value=47 Score=34.81 Aligned_cols=217 Identities=13% Similarity=0.179 Sum_probs=110.7
Q ss_pred CCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECC----CCcE-EEeccCCCCCCCceeE
Q 006473 110 KQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLK----TNQW-EQLNLKGCPSPRSGHR 184 (643)
Q Consensus 110 ~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~----t~~W-~~~~~~g~P~~Rs~h~ 184 (643)
.+.|+.-.-+..|..-.-|+.|.+++.-|++|=.+..... .-+ .+..|... ...- +.++.. ....-+-.+
T Consensus 269 ~spW~~t~L~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~P---Re~-G~~yfs~~~~sp~~~vrr~i~se-y~~~AsEPC 343 (670)
T 3ju4_A 269 KSPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAP---REV-GLFYFPDAFNSPSNYVRRQIPSE-YEPDASEPC 343 (670)
T ss_dssp TSCCEEEECCSCTTCSEEEEEEECSSSCEEEEEEECSSSS---CEE-EEEEETTTTTCTTCCEEEECCGG-GCTTEEEEE
T ss_pred cCCceecccccccceeeeeeeeEecCCceEEEeccCCCCc---cee-eEEEecccccCCcceeeeechhh-hccccccch
Confidence 3457655555566677789999998888888743332221 001 12222111 1111 222221 122334455
Q ss_pred EEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCC---CCCc
Q 006473 185 MVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKE---VSTD 261 (643)
Q Consensus 185 ~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~---~~~~ 261 (643)
.-++++.||+.--.... +..-..|.+-+..-..|..+..+. .......-++..++.|||||--... ....
T Consensus 344 vkyYdgvLyLtTRgt~~---~~~GS~L~rs~d~Gq~w~slrfp~----nvHhtnlPFakvgD~l~mFgsERA~nEWE~G~ 416 (670)
T 3ju4_A 344 IKYYDGVLYLITRGTRG---DRLGSSLHRSRDIGQTWESLRFPH----NVHHTTLPFAKVGDDLIMFGSERAENEWEAGA 416 (670)
T ss_dssp EEEETTEEEEEEEESCT---TSCCCEEEEESSTTSSCEEEECTT----CCCSSCCCEEEETTEEEEEEECSSTTCSSTTC
T ss_pred hhhhCCEEEEEecCcCC---CCCcceeeeecccCCchhheeccc----cccccCCCcceeCCEEEEEeccccccccccCC
Confidence 66779999998643222 223456777777778899987651 2333444456779999999853221 0000
Q ss_pred cCCCCCCceeee-EEEEe-----CCCCeeEEeccC---CCCCCCceeeE-EEEECCeE-EEeccccccc---cCcc----
Q 006473 262 KNQSEKGIIHSD-LWSLD-----PRTWEWSKVKKI---GMPPGPRAGFS-MCVHKKRA-LLFGGVVDME---MKGD---- 323 (643)
Q Consensus 262 ~~~~~~~~~~~d-v~~yd-----~~t~~W~~l~~~---g~~P~~R~g~s-~~~~~~~i-yvfGG~~~~~---~~~~---- 323 (643)
...+-.+..-.. +.+.+ ....+|..+... |..-..-.|.+ +|+.++.| |||||.+... ..++
T Consensus 417 pD~RY~a~yPRtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFGgEd~~np~s~gdN~~k~ 496 (670)
T 3ju4_A 417 PDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHFNPWTYGDNSAKD 496 (670)
T ss_dssp CCCCSSCBCCEEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEEEBCSCCCCTTTTTTTCC
T ss_pred CcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEecCcccCCccccccccccC
Confidence 111112221111 12233 345578777542 33344444544 45556765 5789864321 1111
Q ss_pred -ccccccCCcEEEEEC
Q 006473 324 -VIMSLFLNELYGFQL 338 (643)
Q Consensus 324 -~~~~~~~ndl~~yd~ 338 (643)
.-......+||+|-+
T Consensus 497 ~~~~~Ghp~dlY~~ri 512 (670)
T 3ju4_A 497 PFKSDGHPSDLYCYKM 512 (670)
T ss_dssp TTSTTCCCCEEEEEEE
T ss_pred ccccCCCCcceEEEEE
Confidence 112233457888865
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=83.34 E-value=37 Score=33.46 Aligned_cols=95 Identities=7% Similarity=0.094 Sum_probs=51.3
Q ss_pred cEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCc---EEEecc--CC
Q 006473 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ---WEQLNL--KG 175 (643)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~---W~~~~~--~g 175 (643)
.+++|++.+.+...+... |..+.....+.. ++.+|+.--. ...+|++|+.+.. |..-.. ..
T Consensus 96 ~v~~~d~~~g~~~~~~~~--~~~~~~~g~~~~~~~~~~v~d~~-----------~g~i~~~d~~~~~~~v~~~~~~~~~~ 162 (306)
T 2p4o_A 96 PVVSLVKSDGTVETLLTL--PDAIFLNGITPLSDTQYLTADSY-----------RGAIWLIDVVQPSGSIWLEHPMLARS 162 (306)
T ss_dssp EEEEEECTTSCEEEEEEC--TTCSCEEEEEESSSSEEEEEETT-----------TTEEEEEETTTTEEEEEEECGGGSCS
T ss_pred eEEEEcCCCCeEEEEEeC--CCccccCcccccCCCcEEEEECC-----------CCeEEEEeCCCCcEeEEEECCccccc
Confidence 488899888887766432 334444444444 5667775321 2479999987642 211110 00
Q ss_pred CCCC--CceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCC
Q 006473 176 CPSP--RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (643)
Q Consensus 176 ~P~~--Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t 218 (643)
.+.. .....+..-++.||+.-- ..+.|++|++..
T Consensus 163 ~~~~~~~~pngis~dg~~lyv~d~---------~~~~I~~~~~~~ 198 (306)
T 2p4o_A 163 NSESVFPAANGLKRFGNFLYVSNT---------EKMLLLRIPVDS 198 (306)
T ss_dssp STTCCSCSEEEEEEETTEEEEEET---------TTTEEEEEEBCT
T ss_pred cccCCCCcCCCcCcCCCEEEEEeC---------CCCEEEEEEeCC
Confidence 1111 122233333568887532 246799999864
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.22 E-value=0.38 Score=50.22 Aligned_cols=53 Identities=13% Similarity=0.170 Sum_probs=25.2
Q ss_pred ccEEEEECCCC--cEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCC--cEEE
Q 006473 101 GDLYRYDVEKQ--EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQ 170 (643)
Q Consensus 101 ndv~~yd~~~~--~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~--~W~~ 170 (643)
+.|+++|..++ .|+.-. . +. . .+.+..++.+|+.|+.. ..++.||..++ .|..
T Consensus 19 g~v~a~d~~tG~~~W~~~~-~--~~-~--s~p~~~~g~~~v~~s~d-----------g~l~a~d~~tG~~~w~~ 75 (369)
T 2hz6_A 19 GSLHAVSKRTGSIKWTLKE-D--PV-L--QVPTHVEEPAFLPDPND-----------GSLYTLGSKNNEGLTKL 75 (369)
T ss_dssp SEEEEEETTTCCEEEEEEC-C--CS-C--CCC-----CCEEECTTT-----------CCEEEC-----CCSEEC
T ss_pred CEEEEEECCCCCEEEEecC-C--Cc-e--ecceEcCCCEEEEeCCC-----------CEEEEEECCCCceeeee
Confidence 36899998876 477543 1 11 1 12223456677776431 35888998665 4653
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=82.96 E-value=39 Score=33.44 Aligned_cols=215 Identities=8% Similarity=-0.078 Sum_probs=104.4
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCC--CCCCceeeEEEEE--CCEEEEEeCccCCC
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN--SPPPRSAHQAVSW--KNYLYIFGGEFTSP 147 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~--~P~pRs~ha~~~~--~~~iyvfGG~~~~~ 147 (643)
+.+++.+. ++.|||.... +.+++||+.++..+.+.... .+. ..-..+++. ++.|||.-......
T Consensus 83 ~gi~~~~~-~g~l~v~d~~----------~~i~~~d~~~g~~~~~~~~~~~~~~-~~p~~i~~d~~~G~l~v~d~~~~~~ 150 (322)
T 2fp8_A 83 YDISYNLQ-NNQLYIVDCY----------YHLSVVGSEGGHATQLATSVDGVPF-KWLYAVTVDQRTGIVYFTDVSTLYD 150 (322)
T ss_dssp EEEEEETT-TTEEEEEETT----------TEEEEECTTCEECEEEESEETTEEC-SCEEEEEECTTTCCEEEEESCSSCC
T ss_pred ceEEEcCC-CCcEEEEECC----------CCEEEEeCCCCEEEEecccCCCCcc-cccceEEEecCCCEEEEECCccccc
Confidence 44555421 4678876331 23788898877665553211 111 122333333 46888864321000
Q ss_pred CCCc------ceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-C-CEEEEEeeeecCCCceeeeccEEEEEcCCC
Q 006473 148 NQER------FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (643)
Q Consensus 148 ~~~~------~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~-~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~ 219 (643)
.... ......+++||+.+.....+... +.. -..+++- + +.||+.-.. .+.|++|++...
T Consensus 151 ~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~---p~gia~~~dg~~lyv~d~~---------~~~I~~~~~~~~ 217 (322)
T 2fp8_A 151 DRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-LHV---PGGAEVSADSSFVLVAEFL---------SHQIVKYWLEGP 217 (322)
T ss_dssp TTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-ESC---CCEEEECTTSSEEEEEEGG---------GTEEEEEESSST
T ss_pred ccccceehcccCCCceEEEEeCCCCEEEEeccC-Ccc---CcceEECCCCCEEEEEeCC---------CCeEEEEECCCC
Confidence 0000 00125699999988876654321 111 1233443 2 467876321 357899998752
Q ss_pred ---ceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCC
Q 006473 220 ---KWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPG 295 (643)
Q Consensus 220 ---~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~ 295 (643)
.+..+... +.| ..+++. ++.|||......... ........+++||+....-..+....-.+
T Consensus 218 ~~~~~~~~~~~-----~gP---~gi~~d~~G~l~va~~~~~~~~------~~~~~~~~v~~~d~~G~~~~~~~~~~g~~- 282 (322)
T 2fp8_A 218 KKGTAEVLVKI-----PNP---GNIKRNADGHFWVSSSEELDGN------MHGRVDPKGIKFDEFGNILEVIPLPPPFA- 282 (322)
T ss_dssp TTTCEEEEEEC-----SSE---EEEEECTTSCEEEEEEEETTSS------TTSCEEEEEEEECTTSCEEEEEECCTTTT-
T ss_pred cCCccceEEeC-----CCC---CCeEECCCCCEEEEecCccccc------ccCCCccEEEEECCCCCEEEEEECCCCCc-
Confidence 33333322 211 223333 567887653311100 00112456899998765555554321111
Q ss_pred CceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCC
Q 006473 296 PRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (643)
Q Consensus 296 ~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (643)
.....+++..+++|||.+.. .+.|.+|++..
T Consensus 283 ~~~~~~~~~~~g~L~v~~~~--------------~~~i~~~~~~~ 313 (322)
T 2fp8_A 283 GEHFEQIQEHDGLLYIGTLF--------------HGSVGILVYDK 313 (322)
T ss_dssp TSCCCEEEEETTEEEEECSS--------------CSEEEEEEC--
T ss_pred cccceEEEEeCCEEEEeecC--------------CCceEEEeccc
Confidence 12223445568888887532 35588888764
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=82.58 E-value=18 Score=35.48 Aligned_cols=90 Identities=17% Similarity=0.307 Sum_probs=44.2
Q ss_pred EEEEECCCC-cEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECC-CCcEEEeccCCCCCCC
Q 006473 103 LYRYDVEKQ-EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLK-TNQWEQLNLKGCPSPR 180 (643)
Q Consensus 103 v~~yd~~~~-~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~-t~~W~~~~~~g~P~~R 180 (643)
+++||+... .|..... ... ....+..++.||+... ...+++||+. ...|..... ...
T Consensus 80 l~~~d~~g~~~~~~~~~----~~~-~~~~~~~~~~l~v~t~------------~~~l~~~d~~g~~~~~~~~~----~~~ 138 (330)
T 3hxj_A 80 VYAINPDGTEKWRFDTK----KAI-VSDFTIFEDILYVTSM------------DGHLYAINTDGTEKWRFKTK----KAI 138 (330)
T ss_dssp EEEECCCGGGGGGSCC----------CCEEEETTEEEEECT------------TSEEEEECTTSCEEEEEECS----SCC
T ss_pred EEEECCCCcEEEEEECC----CCc-ccCceEECCEEEEEec------------CCEEEEEcCCCCEEEEEcCC----Cce
Confidence 889987432 3432211 111 1122233888887432 1458889887 335665432 111
Q ss_pred ceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCC-CceEEe
Q 006473 181 SGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FKWQEI 224 (643)
Q Consensus 181 s~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t-~~W~~v 224 (643)
..+.+.. ++.||+ |.. ...+++||+.. ..|...
T Consensus 139 -~~~~~~~~~g~l~v-gt~---------~~~l~~~d~~g~~~~~~~ 173 (330)
T 3hxj_A 139 -YATPIVSEDGTIYV-GSN---------DNYLYAINPDGTEKWRFK 173 (330)
T ss_dssp -CSCCEECTTSCEEE-ECT---------TSEEEEECTTSCEEEEEE
T ss_pred -eeeeEEcCCCEEEE-EcC---------CCEEEEECCCCCEeEEEe
Confidence 1223344 567766 321 24688898872 225543
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=82.48 E-value=16 Score=40.66 Aligned_cols=88 Identities=13% Similarity=0.060 Sum_probs=47.3
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCc
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~ 151 (643)
.++.+.| +++.++++..............++++|+.+.+.+.+........+..+.+..-+++.++|+..
T Consensus 64 ~~~~~Sp--Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-------- 133 (723)
T 1xfd_A 64 IRYEISP--DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-------- 133 (723)
T ss_dssp SEEEECT--TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET--------
T ss_pred ceEEECC--CCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC--------
Confidence 4455666 677677765321111122347899999999877666543211111111111114444444432
Q ss_pred ceecCeEEEEECCCCcEEEecc
Q 006473 152 FHHYKDFWMLDLKTNQWEQLNL 173 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~ 173 (643)
+.+|++|+.++....+..
T Consensus 134 ----~~i~~~~~~~g~~~~~~~ 151 (723)
T 1xfd_A 134 ----NNIYYCAHVGKQAIRVVS 151 (723)
T ss_dssp ----TEEEEESSSSSCCEEEEC
T ss_pred ----CeEEEEECCCCceEEEec
Confidence 368888888877666644
|
| >1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=82.26 E-value=11 Score=36.27 Aligned_cols=101 Identities=20% Similarity=0.490 Sum_probs=55.4
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcE--EEecC--CCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecC
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW--KVISS--PNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYK 156 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W--~~l~s--~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~ 156 (643)
++++|+|=|. .+|+|+.....+ ..|.. +.+|. .--++...++++|+|-| +
T Consensus 28 ~g~~yfFkg~-----------~~Wr~~~~~~~~~p~~Is~~wpgLP~--~IDAA~~~~~~~yfFkG-------------~ 81 (219)
T 1hxn_A 28 HGATYVFSGS-----------HYWRLDTNRDGWHSWPIAHQWPQGPS--TVDAAFSWEDKLYLIQD-------------T 81 (219)
T ss_dssp TSCEEEEETT-----------EEEESSSSSCTTCCEEGGGTCTTSCS--SCSEEEEETTEEEEEET-------------T
T ss_pred CCcEEEEeCC-----------EEEEEcCCCCCCCceEhhhhccCCCC--CccEEEEECCcEEEecC-------------C
Confidence 6889998883 456665443221 12221 12232 22334445899999977 4
Q ss_pred eEEEEECCCC-cE-----EEecc-CCCCCC--Cce-eEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCC
Q 006473 157 DFWMLDLKTN-QW-----EQLNL-KGCPSP--RSG-HRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (643)
Q Consensus 157 dv~~yD~~t~-~W-----~~~~~-~g~P~~--Rs~-h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t 218 (643)
.+|+|+..++ +- ..+.. .|+|.. ..+ -+++.+ ++++|+|-| +..|+||..+
T Consensus 82 ~yw~~~~~~~~~~~~gyPk~i~~~~G~p~~~~~~~IDAA~~~~~~gk~yfFkG-----------~~ywr~d~~~ 144 (219)
T 1hxn_A 82 KVYVFLTKGGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAG-----------RRLWWLDLKS 144 (219)
T ss_dssp EEEEEECSSSCEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEET-----------TEEEEEEGGG
T ss_pred EEEEEeCCCCceecCCCCeehhhccCCCCcccccccceeEEecCCCEEEEEeC-----------CEEEEEeCCC
Confidence 6899986532 11 11211 233433 112 233333 579999987 3578999764
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.63 E-value=69 Score=37.27 Aligned_cols=110 Identities=11% Similarity=0.116 Sum_probs=56.4
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCc
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~ 151 (643)
.++++.| ++.+++.|+. + ..+++|+..+.+-..... ....-.+++...+.+++.|+..
T Consensus 21 ~~lafsp--dg~~lAsgs~--D-------g~I~lw~~~~~~~~~~~~----~~~~V~~l~fspg~~L~S~s~D------- 78 (902)
T 2oaj_A 21 IAAAFDF--TQNLLAIATV--T-------GEVHIYGQQQVEVVIKLE----DRSAIKEMRFVKGIYLVVINAK------- 78 (902)
T ss_dssp EEEEEET--TTTEEEEEET--T-------SEEEEECSTTCEEEEECS----SCCCEEEEEEETTTEEEEEETT-------
T ss_pred EEEEECC--CCCEEEEEeC--C-------CEEEEEeCCCcEEEEEcC----CCCCEEEEEEcCCCEEEEEECc-------
Confidence 3455666 6778888883 2 367788877655433211 1111122222334445555431
Q ss_pred ceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCce
Q 006473 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W 221 (643)
+.+.++|+.+.+....-. .+. .-.++.+ ++..++.|+.+ ..|.+||+.+..-
T Consensus 79 ----~~v~lWd~~~~~~~~~~~--~~~---~V~~v~~sp~g~~l~sgs~d---------g~V~lwd~~~~~~ 132 (902)
T 2oaj_A 79 ----DTVYVLSLYSQKVLTTVF--VPG---KITSIDTDASLDWMLIGLQN---------GSMIVYDIDRDQL 132 (902)
T ss_dssp ----CEEEEEETTTCSEEEEEE--CSS---CEEEEECCTTCSEEEEEETT---------SCEEEEETTTTEE
T ss_pred ----CeEEEEECCCCcEEEEEc--CCC---CEEEEEECCCCCEEEEEcCC---------CcEEEEECCCCcc
Confidence 467888988765432211 111 1122222 44555556532 4578888887653
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.49 E-value=24 Score=34.70 Aligned_cols=144 Identities=15% Similarity=0.104 Sum_probs=73.0
Q ss_pred CEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEE
Q 006473 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLY 212 (643)
Q Consensus 135 ~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~ 212 (643)
+.+++.|+.. ..+.+||+.+........ .......-.++.+ ++.+++.|+.+ ..+.
T Consensus 54 g~~l~~~~~d-----------g~i~iw~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~d---------g~v~ 111 (368)
T 3mmy_A 54 GNFLIAGSWA-----------NDVRCWEVQDSGQTIPKA--QQMHTGPVLDVCWSDDGSKVFTASCD---------KTAK 111 (368)
T ss_dssp SEEEEEEETT-----------SEEEEEEECTTSCEEEEE--EEECSSCEEEEEECTTSSEEEEEETT---------SEEE
T ss_pred ceEEEEECCC-----------CcEEEEEcCCCCceeEEE--eccccCCEEEEEECcCCCEEEEEcCC---------CcEE
Confidence 4777877753 346777777633222111 0001111122233 45566666642 4688
Q ss_pred EEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCC
Q 006473 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG 291 (643)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g 291 (643)
+||+.+.....+... ..+.....+... ++.+++.|+.++. +.+||+.+.+-...-.
T Consensus 112 iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~~~~~dg~----------------i~vwd~~~~~~~~~~~-- 168 (368)
T 3mmy_A 112 MWDLSSNQAIQIAQH-----DAPVKTIHWIKAPNYSCVMTGSWDKT----------------LKFWDTRSSNPMMVLQ-- 168 (368)
T ss_dssp EEETTTTEEEEEEEC-----SSCEEEEEEEECSSCEEEEEEETTSE----------------EEEECSSCSSCSEEEE--
T ss_pred EEEcCCCCceeeccc-----cCceEEEEEEeCCCCCEEEEccCCCc----------------EEEEECCCCcEEEEEe--
Confidence 899988775554332 222222222113 6677888887654 7788876654222211
Q ss_pred CCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCC
Q 006473 292 MPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (643)
Q Consensus 292 ~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (643)
......++......+++.++. +.+.+|++...
T Consensus 169 ---~~~~~~~~~~~~~~~~~~~~~---------------~~i~~~~~~~~ 200 (368)
T 3mmy_A 169 ---LPERCYCADVIYPMAVVATAE---------------RGLIVYQLENQ 200 (368)
T ss_dssp ---CSSCEEEEEEETTEEEEEEGG---------------GCEEEEECSSS
T ss_pred ---cCCCceEEEecCCeeEEEeCC---------------CcEEEEEeccc
Confidence 112333444555555444332 34788888765
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=81.24 E-value=37 Score=33.28 Aligned_cols=108 Identities=8% Similarity=0.041 Sum_probs=51.4
Q ss_pred cEEEEECCCCcEEEecCCCCCCCc--eeeEEEEE-CCEEEEE----eCccCC--CCCCcceecCeEEEEECCCCcEEEec
Q 006473 102 DLYRYDVEKQEWKVISSPNSPPPR--SAHQAVSW-KNYLYIF----GGEFTS--PNQERFHHYKDFWMLDLKTNQWEQLN 172 (643)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~pR--s~ha~~~~-~~~iyvf----GG~~~~--~~~~~~~~~~dv~~yD~~t~~W~~~~ 172 (643)
.|++|++. ++.+.+.... +..+ .-..++.. ++.||+. |-.... ...........+|+||+.+++++.+.
T Consensus 108 ~v~~~~~~-g~~~~~~~~~-~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~ 185 (305)
T 3dr2_A 108 AITRSDAD-GQAHLLVGRY-AGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA 185 (305)
T ss_dssp EEEEECTT-SCEEEEECEE-TTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE
T ss_pred EEEEECCC-CCEEEEEecc-CCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe
Confidence 57788876 6666554221 1111 11223333 6778885 321100 00000001257999999888877664
Q ss_pred cCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 173 LKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 173 ~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
.... -..++.. +..||+....... ...+.+++|++....
T Consensus 186 --~~~~---p~gl~~spdg~~lyv~~~~~~~----~~~~~i~~~~~~~~~ 226 (305)
T 3dr2_A 186 --DLDH---PNGLAFSPDEQTLYVSQTPEQG----HGSVEITAFAWRDGA 226 (305)
T ss_dssp --EESS---EEEEEECTTSSEEEEEECCC-------CCCEEEEEEEETTE
T ss_pred --cCCC---CcceEEcCCCCEEEEEecCCcC----CCCCEEEEEEecCCC
Confidence 1111 1233333 3457776432100 012578899887554
|
| >3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.79 E-value=12 Score=35.20 Aligned_cols=102 Identities=18% Similarity=0.414 Sum_probs=57.9
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcE---EEecCC--CCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcce
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW---KVISSP--NSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFH 153 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W---~~l~s~--~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~ 153 (643)
++++|+|-| +.+|+|+..+... +.|... ..|..+. -++... ++++|+|-|
T Consensus 61 ~g~~yfFkg-----------~~yw~~~~~~~~~gyPk~I~~~~~glP~~~I-DAA~~~~~~g~~yfFkG----------- 117 (196)
T 3c7x_A 61 DGKFVFFKG-----------DKHWVFDEASLEPGYPKHIKELGRGLPTDKI-DAALFWMPNGKTYFFRG----------- 117 (196)
T ss_dssp TSCEEEEET-----------TEEEEEETTEECTTCSEEGGGTCBSCCSSCC-SEEEEETTTTEEEEEET-----------
T ss_pred CCcEEEecC-----------CEEEEEeCCcccCCCCeEhhhcCCCCCCCcc-cEEEEEccCCEEEEEEC-----------
Confidence 688999988 3678887542110 122221 1332222 233333 689999987
Q ss_pred ecCeEEEEECCCCcEEE-----ecc-CCCCCCCceeEEEEE-CC-EEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 154 HYKDFWMLDLKTNQWEQ-----LNL-KGCPSPRSGHRMVLY-KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 154 ~~~dv~~yD~~t~~W~~-----~~~-~g~P~~Rs~h~~~~~-~~-~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
+..|+||..+++-.. +.. .++|. .-.++..+ ++ ++|+|-| +..|+||..+.+
T Consensus 118 --~~yw~yd~~~~~v~~gyPk~i~~~~gip~--~idaAf~~~~~~~~YfFkg-----------~~y~r~d~~~~~ 177 (196)
T 3c7x_A 118 --NKYYRFNEELRAVDSEYPKNIKVWEGIPE--SPRGSFMGSDEVFTYFYKG-----------NKYWKFNNQKLK 177 (196)
T ss_dssp --TEEEEEETTTTEECTTCSEEGGGSBTCCS--SCSEEEECTTSSEEEEEET-----------TEEEEEETTTTE
T ss_pred --CEEEEEeCCcccccCCCCccHHHCCCcCC--CcceeEEecCCCEEEEEEC-----------CEEEEEECCcce
Confidence 468999987754221 111 12232 22344445 44 8999977 457899987653
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.57 E-value=48 Score=32.90 Aligned_cols=103 Identities=13% Similarity=0.115 Sum_probs=55.3
Q ss_pred CEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEE
Q 006473 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWM 160 (643)
Q Consensus 82 ~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~ 160 (643)
+.+++.|+. + +.+..||+.+.+-..+.... ....-.+++.. ++.+++.|+.. ..+.+
T Consensus 139 ~~~l~s~s~--d-------g~i~~wd~~~~~~~~~~~~~--~~~~i~~~~~~pdg~~lasg~~d-----------g~i~i 196 (343)
T 3lrv_A 139 TEYFIWADN--R-------GTIGFQSYEDDSQYIVHSAK--SDVEYSSGVLHKDSLLLALYSPD-----------GILDV 196 (343)
T ss_dssp CCEEEEEET--T-------CCEEEEESSSSCEEEEECCC--SSCCCCEEEECTTSCEEEEECTT-----------SCEEE
T ss_pred CCEEEEEeC--C-------CcEEEEECCCCcEEEEEecC--CCCceEEEEECCCCCEEEEEcCC-----------CEEEE
Confidence 556666772 2 36888999888765443222 11112222222 56777777753 35788
Q ss_pred EECCCCcEE--EeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 161 LDLKTNQWE--QLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 161 yD~~t~~W~--~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
||+.+..-. .+.. ... ..-.++.+ ++.+++.|+ . +.+.+||+.+..
T Consensus 197 wd~~~~~~~~~~~~~---~h~-~~v~~l~fs~~g~~l~s~~-~---------~~v~iwd~~~~~ 246 (343)
T 3lrv_A 197 YNLSSPDQASSRFPV---DEE-AKIKEVKFADNGYWMVVEC-D---------QTVVCFDLRKDV 246 (343)
T ss_dssp EESSCTTSCCEECCC---CTT-SCEEEEEECTTSSEEEEEE-S---------SBEEEEETTSST
T ss_pred EECCCCCCCccEEec---cCC-CCEEEEEEeCCCCEEEEEe-C---------CeEEEEEcCCCC
Confidence 999877533 2211 011 11122233 455555555 2 258889987653
|
| >3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A | Back alignment and structure |
|---|
Probab=80.53 E-value=16 Score=37.99 Aligned_cols=108 Identities=15% Similarity=0.179 Sum_probs=60.7
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCc--E-EEecCCCCCCC-ceeeEEEEE--CCEEEEEeCccCCCCCCccee
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--W-KVISSPNSPPP-RSAHQAVSW--KNYLYIFGGEFTSPNQERFHH 154 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~--W-~~l~s~~~P~p-Rs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~ 154 (643)
++++|+|=| +.+|+|+..+.. + +.|.....|.. ..--++... ++++|+|-|
T Consensus 236 ~g~~~fFkg-----------~~yWr~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG------------ 292 (365)
T 3ba0_A 236 RNQVFLFKD-----------DKYWLISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVD------------ 292 (365)
T ss_dssp GTEEEEEET-----------TEEEECSTTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEET------------
T ss_pred CCEEEEEeC-----------CEEEEEcCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEEC------------
Confidence 578999877 356777643211 1 12332223331 122333344 589999977
Q ss_pred cCeEEEEECCCCcEEEeccCC----C-CCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEE
Q 006473 155 YKDFWMLDLKTNQWEQLNLKG----C-PSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE 223 (643)
Q Consensus 155 ~~dv~~yD~~t~~W~~~~~~g----~-P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~ 223 (643)
+.+|+||..+++-..--++. . ..+..-.++..+ ++++|+|-| +..|+||..+.+-..
T Consensus 293 -~~yw~yd~~~~~v~~gyPk~I~~~f~g~p~~iDaA~~~~~g~~YfFkg-----------~~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 293 -NQYWRYDERRQMMDPGYPKLITKNFQGIGPKIDAVFYSKNKYYYFFQG-----------SNQFEYDFLLQRITK 355 (365)
T ss_dssp -TEEEEEETTTTEECSSCCCCHHHHSTTCCSSCSEEEEETTTEEEEEET-----------TEEEEEETTTTEEEE
T ss_pred -CEEEEEeCCcceecCCCCcchhhcCCCCCCccceeeEecCCcEEEEeC-----------CEEEEEECCccEEec
Confidence 46899998765432211110 0 112223445556 889999976 458999988766544
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=80.27 E-value=47 Score=32.59 Aligned_cols=106 Identities=8% Similarity=0.004 Sum_probs=57.5
Q ss_pred CEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCC
Q 006473 190 HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEK 267 (643)
Q Consensus 190 ~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~ 267 (643)
+.+++.|+.+ ..+.+||+.+..-...-.. . ..+.. ++... ++.+++.|+.++.
T Consensus 85 ~~~l~~~~~d---------g~i~v~d~~~~~~~~~~~~-~---~~~i~--~~~~~~~~~~~l~s~~~dg~---------- 139 (366)
T 3k26_A 85 HPLLAVAGSR---------GIIRIINPITMQCIKHYVG-H---GNAIN--ELKFHPRDPNLLLSVSKDHA---------- 139 (366)
T ss_dssp CEEEEEEETT---------CEEEEECTTTCCEEEEEES-C---CSCEE--EEEECSSCTTEEEEEETTSC----------
T ss_pred CCEEEEecCC---------CEEEEEEchhceEeeeecC-C---CCcEE--EEEECCCCCCEEEEEeCCCe----------
Confidence 5677777742 3588888876543222111 0 11111 22222 5678888887665
Q ss_pred CceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCCC
Q 006473 268 GIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (643)
Q Consensus 268 ~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (643)
+.+||+.+.+-...-.. .......-.++++. ++..++.|+.. +.|.+||+.+.
T Consensus 140 ------i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~~~ 193 (366)
T 3k26_A 140 ------LRLWNIQTDTLVAIFGG-VEGHRDEVLSADYDLLGEKIMSCGMD--------------HSLKLWRINSK 193 (366)
T ss_dssp ------EEEEETTTTEEEEEECS-TTSCSSCEEEEEECTTSSEEEEEETT--------------SCEEEEESCSH
T ss_pred ------EEEEEeecCeEEEEecc-cccccCceeEEEECCCCCEEEEecCC--------------CCEEEEECCCC
Confidence 88899887654443210 00112222334443 46677777653 35889998764
|
| >1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A* | Back alignment and structure |
|---|
Probab=80.01 E-value=17 Score=38.84 Aligned_cols=151 Identities=11% Similarity=0.178 Sum_probs=78.8
Q ss_pred EEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccC----CCCCCCceeEEEEE--CCEEEEEeeeecCC
Q 006473 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK----GCPSPRSGHRMVLY--KHKIIVFGGFYDTL 202 (643)
Q Consensus 129 a~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~----g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~ 202 (643)
+++.+.+.+|+|-|. -+|+++.....+...... ++|.. --++... ++.+|+|=|
T Consensus 267 Ai~~~~ge~y~Fkg~-------------~~wr~~~~~~~~~p~~I~~~Wp~LP~~--iDAa~~~~~~g~~~fFKg----- 326 (450)
T 1su3_A 267 AITTIRGEVMFFKDR-------------FYMRTNPFYPEVELNFISVFWPQLPNG--LEAAYEFADRDEVRFFKG----- 326 (450)
T ss_dssp EEEEETTEEEEEETT-------------EEEECCTTSSSCEEEEGGGTCTTSCSS--CCEEEEEGGGTEEEEEET-----
T ss_pred eEEecCCeEEEEeCC-------------EEEEEcCCCCcccceehhHhccCCCCC--eeEEEEEcCCCeEEEEeC-----
Confidence 455679999999883 467877655443322111 12321 1233333 689999977
Q ss_pred CceeeeccEEEEEcCCCc--e-EEec-cCCCCCCCC--CccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEE
Q 006473 203 REVRYYNDLYVFDLDQFK--W-QEIK-PRFGSMWPS--PRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLW 275 (643)
Q Consensus 203 ~~~~~~~dv~~yD~~t~~--W-~~v~-~~~~~~~P~--~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~ 275 (643)
+.+|+|+..+-. + ..|. .. + +|. .....++... ++++|+|=|. ..|
T Consensus 327 ------~~~W~~~~~~~~~gyP~~i~~~~--g-~P~~~~~IDAA~~~~~~~k~yfFkG~------------------~yw 379 (450)
T 1su3_A 327 ------NKYWAVQGQNVLHGYPKDIYSSF--G-FPRTVKHIDAALSEENTGKTYFFVAN------------------KYW 379 (450)
T ss_dssp ------TEEEEEETTEECTTCSEEHHHHH--C-CCTTCCCCCEEEEETTTTEEEEEETT------------------EEE
T ss_pred ------CEEEEecCCcccCCCceeeehhh--c-CCCCCCccceEEEEcCCCeEEEEeCC------------------EEE
Confidence 346777642100 0 1111 00 0 121 1222222222 6899999763 388
Q ss_pred EEeCCCCeeE-----Eecc--CCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEE
Q 006473 276 SLDPRTWEWS-----KVKK--IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (643)
Q Consensus 276 ~yd~~t~~W~-----~l~~--~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (643)
+||..+.+-. .+.. .|. | ..--++...++++|+|=|. ..|+||..+.+=..
T Consensus 380 ~yd~~~~~~~~gYPk~I~~~fpgi-p--~~iDAA~~~~g~~YFFkg~----------------~ywr~d~~~~~v~~ 437 (450)
T 1su3_A 380 RYDEYKRSMDPGYPKMIAHDFPGI-G--HKVDAVFMKDGFFYFFHGT----------------RQYKFDPKTKRILT 437 (450)
T ss_dssp EEETTTTEECSSCSEEHHHHSTTS-C--SCCSEEEEETTEEEEEETT----------------EEEEEETTTTEEEE
T ss_pred EEeCCCccccCCCCcchhhcCCCC-C--CCccEEEEcCCeEEEEeCC----------------EEEEEECCcceEec
Confidence 9987654321 1110 121 2 1122344468999999874 37899988766443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 643 | ||||
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 2e-12 | |
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 1e-10 | |
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 8e-07 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 7e-07 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 3e-06 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 3e-05 |
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.1 bits (159), Expect = 2e-12
Identities = 41/285 (14%), Positives = 65/285 (22%), Gaps = 47/285 (16%)
Query: 94 GNKTYVYG--------DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFT 145
G Y G L Y+ W + + PRS LY GG
Sbjct: 4 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRL--ADLQVPRSGLAGCVVGGLLYAVGGRNN 61
Query: 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV 205
SP+ D + PR+ + + I GG + +
Sbjct: 62 SPDGNTDSSALDCYNPMTNQWSPCA----PMSVPRNRIGVGVIDGHIYAVGGSHGCIHHN 117
Query: 206 RYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR------SGFQFFVYQDEVFLYGGYSKEVS 259
D + R G GF + Y E
Sbjct: 118 SVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWR 177
Query: 260 TDKNQSEKGIIHS------------------DLWSLDPRTWEWSKVKKIGMPPGPRAGFS 301
+ L S++ E + R+
Sbjct: 178 MITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALG 237
Query: 302 MCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346
+ VH+ R + GG FL+ + + D W +
Sbjct: 238 ITVHQGRIYVLGGYDGHT---------FLDSVECYDPDTDTWSEV 273
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.7 bits (145), Expect = 1e-10
Identities = 32/214 (14%), Positives = 60/214 (28%), Gaps = 31/214 (14%)
Query: 91 FYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQE 150
+ G E + + R LY GG +
Sbjct: 105 YAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGG------FD 158
Query: 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYND 210
+ + N+W + +G + + I GG Y
Sbjct: 159 GTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV--LHNCIYAAGG---------YDGQ 207
Query: 211 LYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGII 270
+ ++++ + F + RS V+Q +++ GGY D
Sbjct: 208 DQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLD--------- 258
Query: 271 HSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV 304
+ DP T WS+V ++ R+G + V
Sbjct: 259 --SVECYDPDTDTWSEVTRM---TSGRSGVGVAV 287
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.8 bits (114), Expect = 8e-07
Identities = 39/315 (12%), Positives = 74/315 (23%), Gaps = 51/315 (16%)
Query: 190 HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVF 249
I GG++ + + L ++ W + PRSG V ++
Sbjct: 5 RLIYTAGGYFR-----QSLSYLEAYNPSNGTWLRLAD-----LQVPRSGLAGCVVGGLLY 54
Query: 250 LYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRA 309
GG + + + S + ++ PR + V
Sbjct: 55 AVGGRNNSPDGNTDSSALDCYN----------PMTNQWSPCAPMSVPRNRIGVGVIDGHI 104
Query: 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSS 369
GG V + +
Sbjct: 105 YAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRI---------------------GVG 143
Query: 370 ALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGG 429
FD + +AE Y I ++ + + +GG
Sbjct: 144 VAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGG 203
Query: 430 KPYESKKKS-----DMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDD 484
+ + S ++ R + V + +YV GG D LD
Sbjct: 204 YDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGY----DGHTFLDS 259
Query: 485 LYSLNLSKLDEWKCI 499
+ + D W +
Sbjct: 260 VECYDPDT-DTWSEV 273
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 49.4 bits (116), Expect = 7e-07
Identities = 18/163 (11%), Positives = 44/163 (26%), Gaps = 11/163 (6%)
Query: 64 PAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPP 123
AP ++ + +K L G Y + + + + N
Sbjct: 227 VAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLY 286
Query: 124 PRSAHQAVSWKNY--LYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRS 181
+I GG+ E + + + + + N R
Sbjct: 287 FARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN--PNSIVRV 344
Query: 182 GHR--MVLYKHKIIVFGGF-----YDTLREVRYYNDLYVFDLD 217
H ++L ++ GG + + + Y+++ +
Sbjct: 345 YHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTPNYLYNSN 387
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 47.5 bits (111), Expect = 3e-06
Identities = 20/181 (11%), Positives = 38/181 (20%), Gaps = 21/181 (11%)
Query: 119 PNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178
+ P +A + ++ D T +
Sbjct: 15 IDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKH 74
Query: 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG 238
+ + + IV G D ++ Y+ S P P
Sbjct: 75 DMFCPGISMDGNGQIVVTGGNDA-KKTSLYD----------------SSSDSWIPGPDMQ 117
Query: 239 FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRA 298
G V T G+ + P + W+ + + P A
Sbjct: 118 VARGYQSSATMSDG----RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTA 173
Query: 299 G 299
Sbjct: 174 D 174
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 44.4 bits (103), Expect = 3e-05
Identities = 22/287 (7%), Positives = 56/287 (19%), Gaps = 29/287 (10%)
Query: 63 VPAPSPRSNCSLNINPLKETELILYGGEF--YNGNKTYVYGDLYRYDVEKQEWKVISSPN 120
+ P + ++ ++++ G +D +
Sbjct: 15 IDLPIVPAAAAI---EPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV 71
Query: 121 SPPPR--SAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178
+ + G + K + D ++ W
Sbjct: 72 TKHDMFCPGISMDGNGQIVVTGG-----------NDAKKTSLYDSSSDSWIPGP--DMQV 118
Query: 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG 238
R + G + + V+ W + P
Sbjct: 119 ARGYQSSATMSDGRVFTIGGSW--SGGVFEKNGEVYSPSSKTWTSL-PNAKVNPMLTADK 175
Query: 239 FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRA 298
+ + +L+ + + G + W + + K G
Sbjct: 176 QGLYRSDNHAWLF------GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAP 229
Query: 299 GFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345
+ G ++ D S + L P
Sbjct: 230 DAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP 276
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 643 | |||
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 100.0 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 100.0 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 99.97 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 99.9 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 96.16 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 96.16 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 95.82 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.52 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 95.33 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 95.17 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 94.93 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 94.85 | |
| d1pexa_ | 192 | Collagenase-3 (MMP-13), C-terminal domain {Human ( | 94.72 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 94.61 | |
| d1pexa_ | 192 | Collagenase-3 (MMP-13), C-terminal domain {Human ( | 94.5 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 94.47 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 94.37 | |
| d1su3a2 | 195 | Collagenase (MMP1), C-terminal domain {Human (Homo | 94.21 | |
| d1qhua1 | 192 | Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: | 94.18 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 94.07 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 93.98 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 93.95 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 93.95 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 93.84 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 93.83 | |
| d1itva_ | 195 | Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: | 93.46 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 93.35 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 93.11 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 93.08 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 92.97 | |
| d1su3a2 | 195 | Collagenase (MMP1), C-terminal domain {Human (Homo | 92.84 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 92.82 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 92.36 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 91.74 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 91.63 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 91.39 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 91.34 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 91.08 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 91.07 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 90.86 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 89.84 | |
| d1itva_ | 195 | Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: | 89.75 | |
| d1qhua1 | 192 | Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: | 89.18 | |
| d1gena_ | 200 | Gelatinase A (MMP-2), C-terminal domain {Human (Ho | 88.52 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 88.02 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 87.19 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 87.03 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 85.27 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 83.81 | |
| d1gena_ | 200 | Gelatinase A (MMP-2), C-terminal domain {Human (Ho | 83.78 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 83.25 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 82.59 | |
| d1hxna_ | 210 | Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: | 81.21 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 81.11 |
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.9e-39 Score=329.42 Aligned_cols=277 Identities=19% Similarity=0.280 Sum_probs=240.2
Q ss_pred cCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeE
Q 006473 79 LKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDF 158 (643)
Q Consensus 79 ~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv 158 (643)
..++.||||||. +.. .++++++||+.+++|+.+++ +|.||++|++++++++||||||....... ...++++
T Consensus 2 ~~g~~iyv~GG~--~~~---~~~~~~~yd~~t~~W~~~~~--~p~~R~~~~~~~~~~~iyv~GG~~~~~~~--~~~~~~~ 72 (288)
T d1zgka1 2 KVGRLIYTAGGY--FRQ---SLSYLEAYNPSNGTWLRLAD--LQVPRSGLAGCVVGGLLYAVGGRNNSPDG--NTDSSAL 72 (288)
T ss_dssp CCCCCEEEECCB--SSS---BCCCEEEEETTTTEEEECCC--CSSCCBSCEEEEETTEEEEECCEEEETTE--EEECCCE
T ss_pred CcCCEEEEECCc--CCC---CCceEEEEECCCCeEEECCC--CCCccceeEEEEECCEEEEEeCcccCCCC--ccccchh
Confidence 347889999995 222 57899999999999999965 57899999999999999999998643322 3467899
Q ss_pred EEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccc
Q 006473 159 WMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG 238 (643)
Q Consensus 159 ~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~ 238 (643)
|+||+.+++|+.+++ +|.+|++|++++++++||++||.... .+++.++.||+.+..|...... +.+|++
T Consensus 73 ~~yd~~~~~w~~~~~--~p~~r~~~~~~~~~~~i~~~gg~~~~----~~~~~~~~~~~~~~~~~~~~~~-----~~~r~~ 141 (288)
T d1zgka1 73 DCYNPMTNQWSPCAP--MSVPRNRIGVGVIDGHIYAVGGSHGC----IHHNSVERYEPERDEWHLVAPM-----LTRRIG 141 (288)
T ss_dssp EEEETTTTEEEECCC--CSSCCBTCEEEEETTEEEEECCEETT----EECCCEEEEETTTTEEEECCCC-----SSCCBS
T ss_pred hhccccccccccccc--ccceecceeccccceeeEEecceecc----cccceeeeeccccCcccccccc-----cccccc
Confidence 999999999999987 89999999999999999999998653 3689999999999999988777 889999
Q ss_pred eeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEecccccc
Q 006473 239 FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDM 318 (643)
Q Consensus 239 ~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~ 318 (643)
|+++.+.+.+|++||.... ....++++||+.+++|..... .|.++.++++++++++||++||...
T Consensus 142 ~~~~~~~~~~~~~GG~~~~-----------~~~~~~~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~i~GG~~~- 206 (288)
T d1zgka1 142 VGVAVLNRLLYAVGGFDGT-----------NRLNSAECYYPERNEWRMITA---MNTIRSGAGVCVLHNCIYAAGGYDG- 206 (288)
T ss_dssp CEEEEETTEEEEECCBCSS-----------CBCCCEEEEETTTTEEEECCC---CSSCCBSCEEEEETTEEEEECCBCS-
T ss_pred ceeeeeeecceEecCcccc-----------cccceEEEeeccccccccccc---cccccccccccceeeeEEEecCccc-
Confidence 9999999999999998765 556789999999999998865 4678899999999999999999865
Q ss_pred ccCccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhh
Q 006473 319 EMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEA 398 (643)
Q Consensus 319 ~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (643)
...+++++.||+.+++|..+..
T Consensus 207 --------~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 228 (288)
T d1zgka1 207 --------QDQLNSVERYDVETETWTFVAP-------------------------------------------------- 228 (288)
T ss_dssp --------SSBCCCEEEEETTTTEEEECCC--------------------------------------------------
T ss_pred --------cccccceeeeeecceeeecccC--------------------------------------------------
Confidence 3457899999999999988764
Q ss_pred hhcccccccccccCCcceeecCceeeeecCCCCCCccccccccccCCCCCcCCccccccceeeecCeEEEecceEeecCe
Q 006473 399 DEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQ 478 (643)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~ 478 (643)
+|.+|++|++++.++.||||||.. .
T Consensus 229 ---------------------------------------------------~p~~r~~~~~~~~~~~l~v~GG~~----~ 253 (288)
T d1zgka1 229 ---------------------------------------------------MKHRRSALGITVHQGRIYVLGGYD----G 253 (288)
T ss_dssp ---------------------------------------------------CSSCCBSCEEEEETTEEEEECCBC----S
T ss_pred ---------------------------------------------------ccCcccceEEEEECCEEEEEecCC----C
Confidence 599999999999999999999973 2
Q ss_pred EEeecceeccccCCccceEEeccCCc
Q 006473 479 EITLDDLYSLNLSKLDEWKCIIPASE 504 (643)
Q Consensus 479 e~tl~D~~~ldl~k~d~w~~i~~~~~ 504 (643)
...++++|.||+.+ +.|++|-+.+.
T Consensus 254 ~~~~~~v~~yd~~~-~~W~~~~~~p~ 278 (288)
T d1zgka1 254 HTFLDSVECYDPDT-DTWSEVTRMTS 278 (288)
T ss_dssp SCBCCEEEEEETTT-TEEEEEEECSS
T ss_pred CeecceEEEEECCC-CEEEECCCCCC
Confidence 34689999999999 99999976543
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6e-36 Score=304.66 Aligned_cols=243 Identities=19% Similarity=0.289 Sum_probs=214.7
Q ss_pred ccCCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEE
Q 006473 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIF 140 (643)
Q Consensus 61 ~~~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvf 140 (643)
...++|.||.+|+++++ +++||||||..........++++++||+.+++|+.+++ .|.+|++|++++++++||++
T Consensus 33 ~~~~~p~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~--~p~~r~~~~~~~~~~~i~~~ 107 (288)
T d1zgka1 33 RLADLQVPRSGLAGCVV---GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAP--MSVPRNRIGVGVIDGHIYAV 107 (288)
T ss_dssp ECCCCSSCCBSCEEEEE---TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCC--CSSCCBTCEEEEETTEEEEE
T ss_pred ECCCCCCccceeEEEEE---CCEEEEEeCcccCCCCccccchhhhccccccccccccc--ccceecceeccccceeeEEe
Confidence 44678999999999999 89999999976444445678999999999999999876 56899999999999999999
Q ss_pred eCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 141 GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
||.... ..++++++||+.++.|..... .+.+|++|+++++++.+|++||..... .+++++.||+.+++
T Consensus 108 gg~~~~------~~~~~~~~~~~~~~~~~~~~~--~~~~r~~~~~~~~~~~~~~~GG~~~~~----~~~~~~~~d~~~~~ 175 (288)
T d1zgka1 108 GGSHGC------IHHNSVERYEPERDEWHLVAP--MLTRRIGVGVAVLNRLLYAVGGFDGTN----RLNSAECYYPERNE 175 (288)
T ss_dssp CCEETT------EECCCEEEEETTTTEEEECCC--CSSCCBSCEEEEETTEEEEECCBCSSC----BCCCEEEEETTTTE
T ss_pred cceecc------cccceeeeeccccCccccccc--cccccccceeeeeeecceEecCccccc----ccceEEEeeccccc
Confidence 998654 357889999999999998876 788999999999999999999986533 47899999999999
Q ss_pred eEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceee
Q 006473 221 WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF 300 (643)
Q Consensus 221 W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~ 300 (643)
|...... +.++.+++++..++.||++||.... ..++++++||+.+.+|+.+.. .|.+|.+|
T Consensus 176 ~~~~~~~-----~~~~~~~~~~~~~~~i~i~GG~~~~-----------~~~~~~~~~~~~~~~~~~~~~---~p~~r~~~ 236 (288)
T d1zgka1 176 WRMITAM-----NTIRSGAGVCVLHNCIYAAGGYDGQ-----------DQLNSVERYDVETETWTFVAP---MKHRRSAL 236 (288)
T ss_dssp EEECCCC-----SSCCBSCEEEEETTEEEEECCBCSS-----------SBCCCEEEEETTTTEEEECCC---CSSCCBSC
T ss_pred ccccccc-----ccccccccccceeeeEEEecCcccc-----------ccccceeeeeecceeeecccC---ccCcccce
Confidence 9998877 7889999999999999999998765 567889999999999999865 47899999
Q ss_pred EEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 301 SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 301 s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
++++++++||||||.+. ..+++++++||+.+++|+.+..
T Consensus 237 ~~~~~~~~l~v~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~ 275 (288)
T d1zgka1 237 GITVHQGRIYVLGGYDG---------HTFLDSVECYDPDTDTWSEVTR 275 (288)
T ss_dssp EEEEETTEEEEECCBCS---------SCBCCEEEEEETTTTEEEEEEE
T ss_pred EEEEECCEEEEEecCCC---------CeecceEEEEECCCCEEEECCC
Confidence 99999999999999864 4578899999999999999987
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=99.97 E-value=4.3e-30 Score=271.94 Aligned_cols=260 Identities=9% Similarity=0.026 Sum_probs=176.2
Q ss_pred cCCCCCCCCceEEEEeccCCCEEEEEcceecCC--CCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEE
Q 006473 62 NVPAPSPRSNCSLNINPLKETELILYGGEFYNG--NKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLY 138 (643)
Q Consensus 62 ~~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g--~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iy 138 (643)
..+.|..|..++++.. +++||||||...+. .....+..+++||+.+++|..++.+..|..+..++.++. +++||
T Consensus 14 ~~~~p~~~~~~a~~~~---~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~ 90 (387)
T d1k3ia3 14 TIDLPIVPAAAAIEPT---SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIV 90 (387)
T ss_dssp EEECSSCCSEEEEETT---TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEE
T ss_pred cCCCCccccEEEEEee---CCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEE
Confidence 3456666665544444 79999999964221 112234568899999999998876665555555555554 78999
Q ss_pred EEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcC
Q 006473 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (643)
Q Consensus 139 vfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~ 217 (643)
++||... +.+++||+.+++|+.+.. +|.+|.+|+++++ +++||++||..... ..++++++||+.
T Consensus 91 v~Gg~~~----------~~~~~yd~~~~~w~~~~~--~~~~r~~~~~~~~~dG~v~v~GG~~~~~---~~~~~v~~yd~~ 155 (387)
T d1k3ia3 91 VTGGNDA----------KKTSLYDSSSDSWIPGPD--MQVARGYQSSATMSDGRVFTIGGSWSGG---VFEKNGEVYSPS 155 (387)
T ss_dssp EECSSST----------TCEEEEEGGGTEEEECCC--CSSCCSSCEEEECTTSCEEEECCCCCSS---SCCCCEEEEETT
T ss_pred EeecCCC----------cceeEecCccCccccccc--ccccccccceeeecCCceeeeccccccc---cccceeeeecCC
Confidence 9998642 568999999999999877 8999999999988 67999999975543 368899999999
Q ss_pred CCceEEeccCCCCC----------------------------------------------------------CCCCccce
Q 006473 218 QFKWQEIKPRFGSM----------------------------------------------------------WPSPRSGF 239 (643)
Q Consensus 218 t~~W~~v~~~~~~~----------------------------------------------------------~P~~R~~~ 239 (643)
+++|+.++...... .+.+++++
T Consensus 156 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (387)
T d1k3ia3 156 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN 235 (387)
T ss_dssp TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCE
T ss_pred CCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCccccccc
Confidence 99999876542100 01122223
Q ss_pred eEEE--eCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEecccc
Q 006473 240 QFFV--YQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVV 316 (643)
Q Consensus 240 s~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~ 316 (643)
++.. .+++|||+||..... ...........+++.+++....|..+.. .|.+|.+|+++++ +++|||+||..
T Consensus 236 ~~~~~~~~g~v~v~GG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~p~~r~~~~~~~~~dg~i~v~GG~~ 309 (387)
T d1k3ia3 236 AVMYDAVKGKILTFGGSPDYQ---DSDATTNAHIITLGEPGTSPNTVFASNG---LYFARTFHTSVVLPDGSTFITGGQR 309 (387)
T ss_dssp EEEEETTTTEEEEECCBSSSS---SSBCCCCEEEEECCSTTSCCEEEECTTC---CSSCCBSCEEEECTTSCEEEECCBS
T ss_pred EEEeeccCCceEEEEeccCCC---CCcccceeecccccccccCCCceeeccc---cccccccceeeeccCCeEEEECCcc
Confidence 3222 267899999976531 0001111122223333455566766654 4789999999888 68999999976
Q ss_pred ccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 317 DMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 317 ~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
...... .....+.+++||+.+++|+.++.
T Consensus 310 ~~~~~~---~~~~~~~ve~Ydp~~~~W~~~~~ 338 (387)
T d1k3ia3 310 RGIPFE---DSTPVFTPEIYVPEQDTFYKQNP 338 (387)
T ss_dssp BCCTTC---CCSBCCCCEEEEGGGTEEEECCC
T ss_pred cCccCC---CCcEeceEEEEECCCCeEEECCC
Confidence 432211 13345678999999999998865
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=99.90 E-value=6.6e-24 Score=223.90 Aligned_cols=158 Identities=12% Similarity=0.062 Sum_probs=120.0
Q ss_pred CCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEE
Q 006473 108 VEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL 187 (643)
Q Consensus 108 ~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~ 187 (643)
|..++|....+ .|..|.+++++..+++||||||............+..+++||+.+++|+.+.....|..+..+++++
T Consensus 6 p~~g~W~~~~~--~p~~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~ 83 (387)
T d1k3ia3 6 PGLGRWGPTID--LPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISM 83 (387)
T ss_dssp TTSCEEEEEEE--CSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEE
T ss_pred CCCCccCCcCC--CCccccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEE
Confidence 56788998754 3566776766667999999999865433322334567899999999999876622344444455444
Q ss_pred E-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCC
Q 006473 188 Y-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQS 265 (643)
Q Consensus 188 ~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~ 265 (643)
. +++||++||.. .+++++||+.+++|+.+..+ |.+|.+|+++++ +++||++||....
T Consensus 84 ~~~g~i~v~Gg~~--------~~~~~~yd~~~~~w~~~~~~-----~~~r~~~~~~~~~dG~v~v~GG~~~~-------- 142 (387)
T d1k3ia3 84 DGNGQIVVTGGND--------AKKTSLYDSSSDSWIPGPDM-----QVARGYQSSATMSDGRVFTIGGSWSG-------- 142 (387)
T ss_dssp CTTSCEEEECSSS--------TTCEEEEEGGGTEEEECCCC-----SSCCSSCEEEECTTSCEEEECCCCCS--------
T ss_pred ecCCcEEEeecCC--------CcceeEecCccCcccccccc-----cccccccceeeecCCceeeecccccc--------
Confidence 4 78999999864 35789999999999998877 889999999888 7899999997654
Q ss_pred CCCceeeeEEEEeCCCCeeEEeccC
Q 006473 266 EKGIIHSDLWSLDPRTWEWSKVKKI 290 (643)
Q Consensus 266 ~~~~~~~dv~~yd~~t~~W~~l~~~ 290 (643)
+..++++++||+.+++|+.+...
T Consensus 143 --~~~~~~v~~yd~~~~~W~~~~~~ 165 (387)
T d1k3ia3 143 --GVFEKNGEVYSPSSKTWTSLPNA 165 (387)
T ss_dssp --SSCCCCEEEEETTTTEEEEETTS
T ss_pred --ccccceeeeecCCCCceeecCCC
Confidence 45677889999999999887653
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.16 E-value=0.6 Score=44.62 Aligned_cols=103 Identities=11% Similarity=-0.002 Sum_probs=56.2
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCC--CC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC--PS 178 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~--P~ 178 (643)
+.|++||+.+++-+....+. +.+..+..-++.|+|... +.+.+||+.+++++.+..... +.
T Consensus 40 ~~I~r~d~~~g~~~~~~~~~----~~~~i~~~~dg~l~va~~-------------~gl~~~d~~tg~~~~l~~~~~~~~~ 102 (295)
T d2ghsa1 40 RELHELHLASGRKTVHALPF----MGSALAKISDSKQLIASD-------------DGLFLRDTATGVLTLHAELESDLPG 102 (295)
T ss_dssp TEEEEEETTTTEEEEEECSS----CEEEEEEEETTEEEEEET-------------TEEEEEETTTCCEEEEECSSTTCTT
T ss_pred CEEEEEECCCCeEEEEECCC----CcEEEEEecCCCEEEEEe-------------CccEEeecccceeeEEeeeecCCCc
Confidence 47999999998766554322 222222233777777532 458899999999988754221 22
Q ss_pred CCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEec
Q 006473 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (643)
Q Consensus 179 ~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (643)
.|.+...+--++.||+-- ..... ......+|.+..++.+.+.
T Consensus 103 ~~~nd~~vd~~G~iw~~~-~~~~~----~~~~g~l~~~~~g~~~~~~ 144 (295)
T d2ghsa1 103 NRSNDGRMHPSGALWIGT-MGRKA----ETGAGSIYHVAKGKVTKLF 144 (295)
T ss_dssp EEEEEEEECTTSCEEEEE-EETTC----CTTCEEEEEEETTEEEEEE
T ss_pred ccceeeEECCCCCEEEEe-ccccc----cccceeEeeecCCcEEEEe
Confidence 233333333367777643 22211 1233344444455554443
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.16 E-value=0.068 Score=52.80 Aligned_cols=147 Identities=12% Similarity=0.111 Sum_probs=76.3
Q ss_pred EEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcc
Q 006473 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERF 152 (643)
Q Consensus 74 ~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~ 152 (643)
++..| ++.++++|+. -+.|.+||..++++..+..... ....-.+++.. ++.+++.||..
T Consensus 13 ~~~s~--dg~~la~~~~---------~~~i~iw~~~~~~~~~~~~l~g-H~~~V~~l~fsp~~~~l~s~s~D-------- 72 (371)
T d1k8kc_ 13 HAWNK--DRTQIAICPN---------NHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSNRIVTCGTD-------- 72 (371)
T ss_dssp EEECT--TSSEEEEECS---------SSEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTTEEEEEETT--------
T ss_pred EEECC--CCCEEEEEeC---------CCEEEEEECCCCCEEEEEEecC-CCCCEEEEEECCCCCEEEEEECC--------
Confidence 34444 6778888872 2368889998888876643210 01111222222 45555666642
Q ss_pred eecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCC
Q 006473 153 HHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGS 230 (643)
Q Consensus 153 ~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~ 230 (643)
..+.++|+.++.|..... .........++.+ ++..++.|+.+. .-.+|.++.....|......
T Consensus 73 ---~~i~vWd~~~~~~~~~~~--~~~~~~~v~~i~~~p~~~~l~~~s~d~-------~i~i~~~~~~~~~~~~~~~~--- 137 (371)
T d1k8kc_ 73 ---RNAYVWTLKGRTWKPTLV--ILRINRAARCVRWAPNEKKFAVGSGSR-------VISICYFEQENDWWVCKHIK--- 137 (371)
T ss_dssp ---SCEEEEEEETTEEEEEEE--CCCCSSCEEEEEECTTSSEEEEEETTS-------SEEEEEEETTTTEEEEEEEC---
T ss_pred ---CeEEEEeecccccccccc--cccccccccccccccccccceeecccC-------cceeeeeecccccccccccc---
Confidence 347778888888886654 2222222233333 455555665322 22466666666655544433
Q ss_pred CCCCCccc-eeEEEe-CCEEEEEcCCCCC
Q 006473 231 MWPSPRSG-FQFFVY-QDEVFLYGGYSKE 257 (643)
Q Consensus 231 ~~P~~R~~-~s~~~~-~~~iyv~GG~~~~ 257 (643)
...+.. .++... ++.+++.|+.++.
T Consensus 138 --~~~~~~v~~v~~~p~~~~l~s~s~D~~ 164 (371)
T d1k8kc_ 138 --KPIRSTVLSLDWHPNSVLLAAGSCDFK 164 (371)
T ss_dssp --TTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred --cccccccccccccccccceeccccCcE
Confidence 111111 122223 5667777777654
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.82 E-value=0.17 Score=48.73 Aligned_cols=193 Identities=13% Similarity=0.067 Sum_probs=94.6
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCc
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~ 151 (643)
+++..| ++.+++.|+. -+.+.+||+.....+.........+. -..++.. ++.+++.|+..
T Consensus 102 ~v~~s~--dg~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s~~~d------- 162 (337)
T d1gxra_ 102 SCKLLP--DGCTLIVGGE---------ASTLSIWDLAAPTPRIKAELTSSAPA-CYALAISPDSKVCFSCCSD------- 162 (337)
T ss_dssp EEEECT--TSSEEEEEES---------SSEEEEEECCCC--EEEEEEECSSSC-EEEEEECTTSSEEEEEETT-------
T ss_pred EEEEcC--CCCEEEEeec---------cccccccccccccccccccccccccc-ccccccccccccccccccc-------
Confidence 344554 5666777773 23678889887665543321111111 1222222 45555555532
Q ss_pred ceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEE-ECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCC
Q 006473 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGS 230 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~-~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~ 230 (643)
..+..++..+.+-..... .... .-.+++. .++..+++|+.+ ..+.+||+.+.+-......
T Consensus 163 ----~~i~~~~~~~~~~~~~~~--~~~~-~v~~l~~s~~~~~~~~~~~d---------~~v~i~d~~~~~~~~~~~~--- 223 (337)
T d1gxra_ 163 ----GNIAVWDLHNQTLVRQFQ--GHTD-GASCIDISNDGTKLWTGGLD---------NTVRSWDLREGRQLQQHDF--- 223 (337)
T ss_dssp ----SCEEEEETTTTEEEEEEC--CCSS-CEEEEEECTTSSEEEEEETT---------SEEEEEETTTTEEEEEEEC---
T ss_pred ----cccccccccccccccccc--cccc-cccccccccccccccccccc---------ccccccccccceeeccccc---
Confidence 357788888776443322 1111 1112222 245566666642 4577888877642211111
Q ss_pred CCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCe
Q 006473 231 MWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKR 308 (643)
Q Consensus 231 ~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~ 308 (643)
+.+ -.+++.. ++.+++.|+.++. +.+||+.+..-..... ... .-.++++. +++
T Consensus 224 --~~~--i~~l~~~~~~~~l~~~~~d~~----------------i~i~d~~~~~~~~~~~----~~~-~i~~v~~s~~g~ 278 (337)
T d1gxra_ 224 --TSQ--IFSLGYCPTGEWLAVGMESSN----------------VEVLHVNKPDKYQLHL----HES-CVLSLKFAYCGK 278 (337)
T ss_dssp --SSC--EEEEEECTTSSEEEEEETTSC----------------EEEEETTSSCEEEECC----CSS-CEEEEEECTTSS
T ss_pred --ccc--eEEEEEcccccccceeccccc----------------cccccccccccccccc----ccc-ccceEEECCCCC
Confidence 111 1223333 5566667776554 6788876665433321 111 12233333 566
Q ss_pred EEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 309 ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 309 iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
.++.||.+ +.|.+||+.+..
T Consensus 279 ~l~s~s~D--------------g~i~iwd~~~~~ 298 (337)
T d1gxra_ 279 WFVSTGKD--------------NLLNAWRTPYGA 298 (337)
T ss_dssp EEEEEETT--------------SEEEEEETTTCC
T ss_pred EEEEEeCC--------------CeEEEEECCCCC
Confidence 77777643 348889987653
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=95.52 E-value=0.76 Score=48.33 Aligned_cols=121 Identities=16% Similarity=0.159 Sum_probs=69.6
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCC--cEEEecCCC------CCCCceeeEEEEECCEEEEEeCccCCCCCCcc
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPN------SPPPRSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~------~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~ 152 (643)
++.|||..+ .+.||++|..++ .|+.-+... ..........+..++.||+....
T Consensus 66 ~g~vyv~t~----------~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------- 126 (560)
T d1kv9a2 66 DGVIYTSMS----------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLD--------- 126 (560)
T ss_dssp TTEEEEEEG----------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTT---------
T ss_pred CCEEEEECC----------CCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeCC---------
Confidence 789998665 257999999987 488532211 01111223445557777776431
Q ss_pred eecCeEEEEECCCCc--EEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc--eEEeccC
Q 006473 153 HHYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPR 227 (643)
Q Consensus 153 ~~~~dv~~yD~~t~~--W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~ 227 (643)
..++.+|..+.+ |........+.......-+++++.+|+-+..... .....|..||..|.+ |+.-...
T Consensus 127 ---g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~----~~~G~v~a~D~~TG~~~W~~~t~~ 198 (560)
T d1kv9a2 127 ---GRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEY----GVRGFVSAYDADTGKLAWRFYTVP 198 (560)
T ss_dssp ---SEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTT----CCBCEEEEEETTTCCEEEEEESSC
T ss_pred ---CEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceec----cccceEEEEECCCceEEeeeeecc
Confidence 458899988874 7654331112222223445678877764332211 123568899998865 7665443
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.33 E-value=0.36 Score=46.19 Aligned_cols=106 Identities=9% Similarity=0.013 Sum_probs=55.5
Q ss_pred CEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCC
Q 006473 190 HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKG 268 (643)
Q Consensus 190 ~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~ 268 (643)
.++++.|+.+ ..+.+||..+.+-...... ....-.++... ++.+++.|+.++.
T Consensus 159 ~~~l~sgs~d---------~~i~i~d~~~~~~~~~~~~------~~~~i~~v~~~p~~~~l~~~~~d~~----------- 212 (311)
T d1nr0a1 159 PFRIISGSDD---------NTVAIFEGPPFKFKSTFGE------HTKFVHSVRYNPDGSLFASTGGDGT----------- 212 (311)
T ss_dssp SCEEEEEETT---------SCEEEEETTTBEEEEEECC------CSSCEEEEEECTTSSEEEEEETTSC-----------
T ss_pred eeeecccccc---------ccccccccccccccccccc------ccccccccccCcccccccccccccc-----------
Confidence 4456666642 3577888876543322211 11111223333 5667777776655
Q ss_pred ceeeeEEEEeCCCCeeEEeccCCCCCCCce-----eeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 269 IIHSDLWSLDPRTWEWSKVKKIGMPPGPRA-----GFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 269 ~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~-----g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
+.+||..+..-...-. ....... -.++++. +++.++.||.+ +.|.+||+.+++
T Consensus 213 -----v~~~d~~~~~~~~~~~--~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~D--------------g~v~iwd~~t~~ 271 (311)
T d1nr0a1 213 -----IVLYNGVDGTKTGVFE--DDSLKNVAHSGSVFGLTWSPDGTKIASASAD--------------KTIKIWNVATLK 271 (311)
T ss_dssp -----EEEEETTTCCEEEECB--CTTSSSCSSSSCEEEEEECTTSSEEEEEETT--------------SEEEEEETTTTE
T ss_pred -----cccccccccccccccc--ccccccccccccccccccCCCCCEEEEEeCC--------------CeEEEEECCCCc
Confidence 6778876654332211 1111111 1233333 56777777753 348999998875
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.17 E-value=1.2 Score=41.26 Aligned_cols=58 Identities=22% Similarity=0.192 Sum_probs=36.4
Q ss_pred ceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEE
Q 006473 269 IIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (643)
Q Consensus 269 ~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (643)
.....++.++..+..+...... |.......++...+..+++++. +.+.+||+.+.+..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---------------~~i~v~d~~~~~~~ 273 (337)
T d1pbyb_ 216 AYRTGLLTMDLETGEMAMREVR---IMDVFYFSTAVNPAKTRAFGAY---------------NVLESFDLEKNASI 273 (337)
T ss_dssp GEEEEEEEEETTTCCEEEEEEE---ECSSCEEEEEECTTSSEEEEEE---------------SEEEEEETTTTEEE
T ss_pred ccCccEEEEEcCCCcEEEEEec---CCCcceEEEEecccceEEEEcc---------------ccEEEEECCCCcEE
Confidence 4455688888888877665432 3445555556665555555542 35889998876543
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=94.93 E-value=0.3 Score=46.51 Aligned_cols=157 Identities=16% Similarity=0.131 Sum_probs=85.6
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDF 158 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv 158 (643)
+++++.+++. ..+|+||...+...++.. ..+. ..+.+ +++.++++|.... ..+
T Consensus 14 dG~~~a~~~~----------g~v~v~d~~~~~~~~~~~----~~~v--~~~~~spDg~~l~~~~~~~g---------~~v 68 (360)
T d1k32a3 14 DGDLIAFVSR----------GQAFIQDVSGTYVLKVPE----PLRI--RYVRRGGDTKVAFIHGTREG---------DFL 68 (360)
T ss_dssp GGGCEEEEET----------TEEEEECTTSSBEEECSC----CSCE--EEEEECSSSEEEEEEEETTE---------EEE
T ss_pred CCCEEEEEEC----------CeEEEEECCCCcEEEccC----CCCE--EEEEECCCCCEEEEEEcCCC---------CEE
Confidence 4666666652 478999999998888742 2232 23334 6666666553211 348
Q ss_pred EEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCcc
Q 006473 159 WMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237 (643)
Q Consensus 159 ~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~ 237 (643)
+++|..++....+.. ....-.+++.. +++.+++++. -..++.++..+.....+... ... .
T Consensus 69 ~v~d~~~~~~~~~~~----~~~~v~~~~~spdg~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~-----~~~-~ 129 (360)
T d1k32a3 69 GIYDYRTGKAEKFEE----NLGNVFAMGVDRNGKFAVVAND---------RFEIMTVDLETGKPTVIERS-----REA-M 129 (360)
T ss_dssp EEEETTTCCEEECCC----CCCSEEEEEECTTSSEEEEEET---------TSEEEEEETTTCCEEEEEEC-----SSS-C
T ss_pred EEEECCCCcEEEeeC----CCceEEeeeecccccccceecc---------ccccccccccccceeeeeec-----ccc-c
Confidence 899999988776643 11222223222 5555555553 34688889888776555433 111 1
Q ss_pred ceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEe
Q 006473 238 GFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (643)
Q Consensus 238 ~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l 287 (643)
..+++.. ++..+++++.... ....+.....++++++.+..=..+
T Consensus 130 ~~~~~~spdg~~la~~~~~~~------~~~~~~~~~~~~v~d~~~~~~~~~ 174 (360)
T d1k32a3 130 ITDFTISDNSRFIAYGFPLKH------GETDGYVMQAIHVYDMEGRKIFAA 174 (360)
T ss_dssp CCCEEECTTSCEEEEEEEECS------STTCSCCEEEEEEEETTTTEEEEC
T ss_pred ccchhhccceeeeeeeccccc------cceeeccccceeeeccccCceeee
Confidence 1122222 5555555543322 011223445678889877654333
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=94.85 E-value=1.8 Score=41.45 Aligned_cols=106 Identities=9% Similarity=0.050 Sum_probs=57.4
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCc--eeeEEEEE--CCEEEEEeCccCCCC
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPR--SAHQAVSW--KNYLYIFGGEFTSPN 148 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pR--s~ha~~~~--~~~iyvfGG~~~~~~ 148 (643)
..++.+ ++.||+...... ......+.+++||+.++.+..+..+. +..- .-+.++.. ++.|||..+.
T Consensus 22 Gpa~d~--dG~ly~~~~~~~--~~~~~~g~I~r~d~~~~~~~~~~~~~-~~~~~g~P~Gl~~~~dg~~l~vad~~----- 91 (314)
T d1pjxa_ 22 GPVFDK--NGDFYIVAPEVE--VNGKPAGEILRIDLKTGKKTVICKPE-VNGYGGIPAGCQCDRDANQLFVADMR----- 91 (314)
T ss_dssp EEEECT--TSCEEEEETTCE--ETTEECCEEEEECTTTCCEEEEECCE-ETTEECCEEEEEECSSSSEEEEEETT-----
T ss_pred EeEEeC--CCCEEEEECccc--cccccCCEEEEEECCCCcEEEEECCc-cccCCCcceeEEEeCCCCEEEEEECC-----
Confidence 345555 678888754211 11123467999999999888765432 1111 12334443 4578887542
Q ss_pred CCcceecCeEEEEECCCCcEEEeccCCCCC-CCceeEEEEE-CCEEEEE
Q 006473 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPS-PRSGHRMVLY-KHKIIVF 195 (643)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~-~Rs~h~~~~~-~~~lyvf 195 (643)
+.+.++++.+.....+....... .+.-+-.++. ++.||+-
T Consensus 92 -------~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvt 133 (314)
T d1pjxa_ 92 -------LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWIT 133 (314)
T ss_dssp -------TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEE
T ss_pred -------CeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEe
Confidence 45889999877655443321111 1111223333 5788875
|
| >d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase-3 (MMP-13), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.72 E-value=0.31 Score=43.93 Aligned_cols=153 Identities=14% Similarity=0.297 Sum_probs=81.8
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEe--c--CCCCCCCceeeEEEEE--CCEEEEEeCccCC
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVI--S--SPNSPPPRSAHQAVSW--KNYLYIFGGEFTS 146 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l--~--s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~ 146 (643)
+++.+ ++++|+|=|. .+|+++.....+... . -+.+|.. --++... ++.+|+|-|
T Consensus 13 Av~~~---~g~~y~Fkg~-----------~~wr~~~~~~~~~p~~i~~~w~~lp~~--IDAAf~~~~~~~~yffkg---- 72 (192)
T d1pexa_ 13 AITSL---RGETMIFKDR-----------FFWRLHPQQVDAELFLTKSFWPELPNR--IDAAYEHPSHDLIFIFRG---- 72 (192)
T ss_dssp EEEEE---TTEEEEEETT-----------EEEEECSSSSCCEEEEHHHHCTTSCSS--CCEEEEETTTTEEEEEET----
T ss_pred EEEEc---CCeEEEEECC-----------EEEEEcCCCCCCcccchhhhCcCCCCc--ccceEEEcCCCEEEEEcC----
Confidence 34455 7899999884 456666555444322 1 1223321 2223333 688999988
Q ss_pred CCCCcceecCeEEEEECCCCcE---EEeccCCCCCCCceeE-EEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 147 PNQERFHHYKDFWMLDLKTNQW---EQLNLKGCPSPRSGHR-MVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 147 ~~~~~~~~~~dv~~yD~~t~~W---~~~~~~g~P~~Rs~h~-~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
+.+|+|+..+..+ ..+...+.|.+-.+-- ++.+ ++++|+|-| +..|+||..+..
T Consensus 73 ---------~~~w~y~~~~~~~gyPk~i~~~~~~~~~~~idaA~~~~~~~~~y~Fkg-----------~~y~~y~~~~~~ 132 (192)
T d1pexa_ 73 ---------RKFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG-----------NQVWRYDDTNHI 132 (192)
T ss_dssp ---------TEEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET-----------TEEEEEETTTTE
T ss_pred ---------CEEEEEcCCcccCCCCeEeeeeecCCCCCCccEEEEECCCCEEEEEeC-----------CEEEEEcCcccc
Confidence 3578887654332 2333222233322222 3333 589999976 346889876653
Q ss_pred e-----EEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEE
Q 006473 221 W-----QEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (643)
Q Consensus 221 W-----~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (643)
- ..|...-.+ +| .+.. ++...++.+|+|-|. ..|+||..+.+-..
T Consensus 133 ~~~~~pk~I~~~w~g-vp-~~vd-Aa~~~~g~~YfF~g~------------------~y~r~~~~~~~v~~ 182 (192)
T d1pexa_ 133 MDKDYPRLIEEDFPG-IG-DKVD-AVYEKNGYIYFFNGP------------------IQFEYSIWSNRIVR 182 (192)
T ss_dssp ECSSCCCBHHHHSTT-SC-SCCS-EEEEETTEEEEEETT------------------EEEEEETTTTEEEE
T ss_pred ccCCCcEEHhhcCCC-CC-CCce-EEEEeCCEEEEEECC------------------EEEEEeCCcCeEcc
Confidence 1 111111111 12 1222 333459999999763 37788877765443
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.61 E-value=0.63 Score=44.86 Aligned_cols=112 Identities=15% Similarity=0.167 Sum_probs=58.9
Q ss_pred EEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcc
Q 006473 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERF 152 (643)
Q Consensus 74 ~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~ 152 (643)
++..| ++.+++.|+. + +.+..++....+........ .. .-.++... .+..++.|+.
T Consensus 127 l~~s~--~~~~l~s~~~--d-------g~v~i~~~~~~~~~~~~~~h--~~-~v~~~~~~~~~~~~~~~~~--------- 183 (388)
T d1erja_ 127 VCFSP--DGKFLATGAE--D-------RLIRIWDIENRKIVMILQGH--EQ-DIYSLDYFPSGDKLVSGSG--------- 183 (388)
T ss_dssp EEECT--TSSEEEEEET--T-------SCEEEEETTTTEEEEEECCC--SS-CEEEEEECTTSSEEEEEET---------
T ss_pred EEECC--CCCcceeccc--c-------cccccccccccccccccccc--cc-ccccccccccccccccccc---------
Confidence 44444 5677777873 2 35788898888766553321 11 11112222 3445555543
Q ss_pred eecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEE
Q 006473 153 HHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE 223 (643)
Q Consensus 153 ~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~ 223 (643)
...+..+|..+........ .. .....++.. ++.+++.|+.+ ..+.+||..+.....
T Consensus 184 --~~~i~~~d~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~l~~~~~d---------~~i~i~~~~~~~~~~ 241 (388)
T d1erja_ 184 --DRTVRIWDLRTGQCSLTLS--IE--DGVTTVAVSPGDGKYIAAGSLD---------RAVRVWDSETGFLVE 241 (388)
T ss_dssp --TSEEEEEETTTTEEEEEEE--CS--SCEEEEEECSTTCCEEEEEETT---------SCEEEEETTTCCEEE
T ss_pred --ceeeeeeeccccccccccc--cc--cccccccccCCCCCeEEEEcCC---------CeEEEeecccCccce
Confidence 2457788887765444322 11 111222222 45666666642 357888888766543
|
| >d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase-3 (MMP-13), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.50 E-value=0.31 Score=43.93 Aligned_cols=150 Identities=14% Similarity=0.223 Sum_probs=80.3
Q ss_pred EEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEecc----CCCCCCCceeEEEEE--CCEEEEEeeeecCC
Q 006473 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL----KGCPSPRSGHRMVLY--KHKIIVFGGFYDTL 202 (643)
Q Consensus 129 a~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~----~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~ 202 (643)
+++.+++.+|+|=|. -+|+++.....+..... .++|... -++... ++.+|+|-|
T Consensus 13 Av~~~~g~~y~Fkg~-------------~~wr~~~~~~~~~p~~i~~~w~~lp~~I--DAAf~~~~~~~~yffkg----- 72 (192)
T d1pexa_ 13 AITSLRGETMIFKDR-------------FFWRLHPQQVDAELFLTKSFWPELPNRI--DAAYEHPSHDLIFIFRG----- 72 (192)
T ss_dssp EEEEETTEEEEEETT-------------EEEEECSSSSCCEEEEHHHHCTTSCSSC--CEEEEETTTTEEEEEET-----
T ss_pred EEEEcCCeEEEEECC-------------EEEEEcCCCCCCcccchhhhCcCCCCcc--cceEEEcCCCEEEEEcC-----
Confidence 566779999999873 46777665544432211 1233321 233333 688999877
Q ss_pred CceeeeccEEEEEcCCCceE---EeccCCCCCCCCCccce-eEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEE
Q 006473 203 REVRYYNDLYVFDLDQFKWQ---EIKPRFGSMWPSPRSGF-QFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWS 276 (643)
Q Consensus 203 ~~~~~~~dv~~yD~~t~~W~---~v~~~~~~~~P~~R~~~-s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~ 276 (643)
+.+|+|+..+..+. .+... -.|.+-..- +++.. ++++|+|-|. ..|+
T Consensus 73 ------~~~w~y~~~~~~~gyPk~i~~~---~~~~~~~~idaA~~~~~~~~~y~Fkg~------------------~y~~ 125 (192)
T d1pexa_ 73 ------RKFWALNGYDILEGYPKKISEL---GLPKEVKKISAAVHFEDTGKTLLFSGN------------------QVWR 125 (192)
T ss_dssp ------TEEEEESTTCCCTTCSEESTTT---TCCTTCCCCCEEEECTTTSEEEEEETT------------------EEEE
T ss_pred ------CEEEEEcCCcccCCCCeEeeee---ecCCCCCCccEEEEECCCCEEEEEeCC------------------EEEE
Confidence 34688875443321 22211 112211111 22222 6899998663 3688
Q ss_pred EeCCCCeeEE-----ecc-CCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcE
Q 006473 277 LDPRTWEWSK-----VKK-IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (643)
Q Consensus 277 yd~~t~~W~~-----l~~-~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (643)
||..+..-.. +.. -+..|. +.- ++...++.+|+|=|. ..|+||..+++=
T Consensus 126 y~~~~~~~~~~~pk~I~~~w~gvp~-~vd-Aa~~~~g~~YfF~g~----------------~y~r~~~~~~~v 180 (192)
T d1pexa_ 126 YDDTNHIMDKDYPRLIEEDFPGIGD-KVD-AVYEKNGYIYFFNGP----------------IQFEYSIWSNRI 180 (192)
T ss_dssp EETTTTEECSSCCCBHHHHSTTSCS-CCS-EEEEETTEEEEEETT----------------EEEEEETTTTEE
T ss_pred EcCccccccCCCcEEHhhcCCCCCC-Cce-EEEEeCCEEEEEECC----------------EEEEEeCCcCeE
Confidence 9876553211 111 011221 222 334568999999874 378899877653
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=94.47 E-value=1.5 Score=39.99 Aligned_cols=194 Identities=13% Similarity=0.048 Sum_probs=95.5
Q ss_pred ceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCC
Q 006473 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPN 148 (643)
Q Consensus 71 ~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~ 148 (643)
.+.+++.|. +..||+.++. .+.+.+||+.+.+-...-. ....-+.++.. +..+++.+..
T Consensus 34 p~~va~spd-G~~l~v~~~~---------~~~i~v~d~~t~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~----- 94 (301)
T d1l0qa2 34 PMGAVISPD-GTKVYVANAH---------SNDVSIIDTATNNVIATVP----AGSSPQGVAVSPDGKQVYVTNMA----- 94 (301)
T ss_dssp EEEEEECTT-SSEEEEEEGG---------GTEEEEEETTTTEEEEEEE----CSSSEEEEEECTTSSEEEEEETT-----
T ss_pred ceEEEEeCC-CCEEEEEECC---------CCEEEEEECCCCceeeeee----ccccccccccccccccccccccc-----
Confidence 356777762 3567776652 2578999999886443211 12223344443 3456655432
Q ss_pred CCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CC-EEEEEeeeecCCCceeeeccEEEEEcCCCceEEecc
Q 006473 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (643)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~-~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (643)
-..+..++..+.+....-. .....+.++.. ++ .+++.+.. ...+..++..+........
T Consensus 95 ------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~dg~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 155 (301)
T d1l0qa2 95 ------SSTLSVIDTTSNTVAGTVK----TGKSPLGLALSPDGKKLYVTNNG---------DKTVSVINTVTKAVINTVS 155 (301)
T ss_dssp ------TTEEEEEETTTTEEEEEEE----CSSSEEEEEECTTSSEEEEEETT---------TTEEEEEETTTTEEEEEEE
T ss_pred ------cceeeecccccceeeeecc----ccccceEEEeecCCCeeeeeecc---------ccceeeeeccccceeeecc
Confidence 1356778888776544322 11222333332 33 44444332 2356777877765444332
Q ss_pred CCCCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEE
Q 006473 227 RFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV 304 (643)
Q Consensus 227 ~~~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~ 304 (643)
.. ..+ ..++.. +..+|+.+.... .+..++............+ ..-.++++
T Consensus 156 ~~----~~~---~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 207 (301)
T d1l0qa2 156 VG----RSP---KGIAVTPDGTKVYVANFDSM----------------SISVIDTVTNSVIDTVKVE-----AAPSGIAV 207 (301)
T ss_dssp CC----SSE---EEEEECTTSSEEEEEETTTT----------------EEEEEETTTTEEEEEEECS-----SEEEEEEE
T ss_pred cC----CCc---eEEEeeccccceeeeccccc----------------ccccccccceeeeeccccc-----CCcceeec
Confidence 21 111 222222 455665544322 2455666665555443321 11223333
Q ss_pred E--CCeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 305 H--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 305 ~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
. +..+|+.+... ..+.|++||+.+.+
T Consensus 208 ~~~g~~~~v~~~~~------------~~~~v~v~D~~t~~ 235 (301)
T d1l0qa2 208 NPEGTKAYVTNVDK------------YFNTVSMIDTGTNK 235 (301)
T ss_dssp CTTSSEEEEEEECS------------SCCEEEEEETTTTE
T ss_pred cccccccccccccc------------eeeeeeeeecCCCe
Confidence 3 45555544321 24569999998765
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.37 E-value=1.6 Score=42.07 Aligned_cols=115 Identities=13% Similarity=0.170 Sum_probs=58.1
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCc
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~ 151 (643)
++.+.| ++.+++.||. + ..+++||+.++.|....... ...+.-.++... ++..++.|+...
T Consensus 56 ~l~fsp--~~~~l~s~s~--D-------~~i~vWd~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~l~~~s~d~------ 117 (371)
T d1k8kc_ 56 GVDWAP--DSNRIVTCGT--D-------RNAYVWTLKGRTWKPTLVIL-RINRAARCVRWAPNEKKFAVGSGSR------ 117 (371)
T ss_dssp EEEEET--TTTEEEEEET--T-------SCEEEEEEETTEEEEEEECC-CCSSCEEEEEECTTSSEEEEEETTS------
T ss_pred EEEECC--CCCEEEEEEC--C-------CeEEEEeecccccccccccc-cccccccccccccccccceeecccC------
Confidence 344555 4566666762 2 36788899999998654321 111222233322 455555554322
Q ss_pred ceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCC
Q 006473 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~ 219 (643)
.-.+|.++.....|...... ..-+..-.++.+ ++.+++.|+.+ ..+.+||+...
T Consensus 118 ---~i~i~~~~~~~~~~~~~~~~--~~~~~~v~~v~~~p~~~~l~s~s~D---------~~v~v~~~~~~ 173 (371)
T d1k8kc_ 118 ---VISICYFEQENDWWVCKHIK--KPIRSTVLSLDWHPNSVLLAAGSCD---------FKCRIFSAYIK 173 (371)
T ss_dssp ---SEEEEEEETTTTEEEEEEEC--TTCCSCEEEEEECTTSSEEEEEETT---------SCEEEEECCCT
T ss_pred ---cceeeeeecccccccccccc--cccccccccccccccccceeccccC---------cEEEEEeeccC
Confidence 12467777766666544331 111222222333 45666777653 24556666543
|
| >d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase (MMP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.21 E-value=0.57 Score=42.21 Aligned_cols=156 Identities=15% Similarity=0.227 Sum_probs=81.1
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEE--EecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCC
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK--VISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPN 148 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~--~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~ 148 (643)
+++.+ +++||+|-|. .+|+++....... .+...-...|..--++... ++++|+|-|
T Consensus 16 Av~~~---~G~~y~Fkg~-----------~~wr~~~~~~~~~p~~i~~~w~glp~~IDAAf~~~~~~~~yfFkG------ 75 (195)
T d1su3a2 16 AITTI---RGEVMFFKDR-----------FYMRTNPFYPEVELNFISVFWPQLPNGLEAAYEFADRDEVRFFKG------ 75 (195)
T ss_dssp EEEEE---TTEEEEEETT-----------EEEECCTTSSSCEEEEGGGTCTTSCSSCCEEEEEGGGTEEEEEET------
T ss_pred EEEEc---CCeEEEEeCC-----------EEEEeeCCCCccCccchHhhCcCCCCcccceEEecCCcEEEEECC------
Confidence 44444 6899999884 3455554444332 1111100112222334334 589999988
Q ss_pred CCcceecCeEEEEECCCCcE---EEe-ccCCCCCCCceeEEE-EE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCce
Q 006473 149 QERFHHYKDFWMLDLKTNQW---EQL-NLKGCPSPRSGHRMV-LY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (643)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W---~~~-~~~g~P~~Rs~h~~~-~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W 221 (643)
+.+|+|+..+..+ ..+ ...|+|.....--++ .+ ++++|+|-| +..|+||..+.+-
T Consensus 76 -------~~y~~y~~~~~~~g~p~~i~~~~G~p~~~~~idaa~~~~~~~~~Y~FkG-----------~~y~ry~~~~~~v 137 (195)
T d1su3a2 76 -------NKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA-----------NKYWRYDEYKRSM 137 (195)
T ss_dssp -------TEEEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET-----------TEEEEEETTTTEE
T ss_pred -------cEEEEEcCCccccCCCccchhhcCCCCCccccccccccCCCCeEEEEeC-----------CEEEEEeccCccc
Confidence 4688888532211 111 111233332222233 33 579999987 3578998876531
Q ss_pred -----EEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEe
Q 006473 222 -----QEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (643)
Q Consensus 222 -----~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l 287 (643)
..|...-.+ +|. ... ++...++.+|+|-|. ..|+||..+.+-..+
T Consensus 138 d~gyPk~I~~~w~G-vp~-~iD-AAf~~~g~~YfFkg~------------------~y~r~~~~~~~v~~~ 187 (195)
T d1su3a2 138 DPGYPKMIAHDFPG-IGH-KVD-AVFMKDGFFYFFHGT------------------RQYKFDPKTKRILTL 187 (195)
T ss_dssp CSSCSEEHHHHSTT-SCS-CCS-EEEEETTEEEEEETT------------------EEEEEETTTTEEEEE
T ss_pred cCCcccccccccCC-CCC-Ccc-EEEEECCeEEEEECC------------------EEEEEeCCcCEEEec
Confidence 111111111 122 222 334458999998774 378888877665443
|
| >d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Hemopexin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=94.18 E-value=0.31 Score=43.99 Aligned_cols=100 Identities=22% Similarity=0.342 Sum_probs=58.1
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcE---EEecC--CCCCCCceeeEEEEE------CCEEEEEeCccCCCCC
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW---KVISS--PNSPPPRSAHQAVSW------KNYLYIFGGEFTSPNQ 149 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W---~~l~s--~~~P~pRs~ha~~~~------~~~iyvfGG~~~~~~~ 149 (643)
++++|+|-| +.+|+|+-.+... +.|.. +.+| ..-.++... ++++|+|-|
T Consensus 59 ~~~~yfFkG-----------~~yw~y~~~~~~~gyPk~i~~~~~glp--~~iDAA~~~~~~~~~~~~~yfFkg------- 118 (192)
T d1qhua1 59 HTSVYLIKG-----------DKVWVYTSEKNEKVYPKSLQDEFPGIP--FPLDAAVECHRGECQDEGILFFQG------- 118 (192)
T ss_dssp TTEEEEEET-----------TEEEEECC-------CEEHHHHSTTCC--SSCCEEEEECBBTBSSSEEEEEET-------
T ss_pred CCcEEEEeC-----------CEEEEEeCCccccCCCcChHHhCCCCC--CCceEEEEccccccCCCeEEEEeC-------
Confidence 579999988 3678887544332 12221 1222 222333332 689999987
Q ss_pred CcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
+..|+||..++.=..-.-.++| . ..+++.+++++|+|-| +..|+||..+.+
T Consensus 119 ------~~yw~yd~~~~~~~~~~w~gip--~-~daA~~~~g~~YfFkg-----------~~y~r~~~~~~~ 169 (192)
T d1qhua1 119 ------NRKWFWDLTTGTKKERSWPAVG--N-CTSALRWLGRYYCFQG-----------NQFLRFNPVSGE 169 (192)
T ss_dssp ------TEEEEEETTTTEEEEECCTTSC--C-CSEEEEETTEEEEEET-----------TEEEEECTTTCC
T ss_pred ------CeEEEEeCCCCCcccccccCcC--C-cceeEEeCCcEEEEEC-----------CEEEEEcCCcce
Confidence 3579999988742221112223 2 2355667999999977 457888877653
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=94.07 E-value=1 Score=42.79 Aligned_cols=177 Identities=10% Similarity=-0.043 Sum_probs=84.6
Q ss_pred cEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC
Q 006473 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (643)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (643)
.+++|++.+..=..+-... .....++.+ ++.+++.|+.. ..+.+||+.+..............
T Consensus 39 ~v~i~~~~~~~~~~~~~~H----~~~v~~~~~sp~g~~latg~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~ 103 (311)
T d1nr0a1 39 SVYTVPVGSLTDTEIYTEH----SHQTTVAKTSPSGYYCASGDVH-----------GNVRIWDTTQTTHILKTTIPVFSG 103 (311)
T ss_dssp EEEEEETTCSSCCEEECCC----SSCEEEEEECTTSSEEEEEETT-----------SEEEEEESSSTTCCEEEEEECSSS
T ss_pred EEEEEECCCCceeEEEcCC----CCCEEEEEEeCCCCeEeccccC-----------ceEeeeeeeccccccccccccccC
Confidence 5788888765332221111 122333334 56677777753 357788887766432211001111
Q ss_pred CceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCCC
Q 006473 180 RSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYS 255 (643)
Q Consensus 180 Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~~ 255 (643)
.-.++.+ ++.+++.+|... ...+.+++..+.+- +..... ....-.+++.. +..+++.|+.+
T Consensus 104 --~v~~v~~s~d~~~l~~~~~~~-------~~~~~v~~~~~~~~--~~~l~~----h~~~v~~v~~~~~~~~~l~sgs~d 168 (311)
T d1nr0a1 104 --PVKDISWDSESKRIAAVGEGR-------ERFGHVFLFDTGTS--NGNLTG----QARAMNSVDFKPSRPFRIISGSDD 168 (311)
T ss_dssp --CEEEEEECTTSCEEEEEECCS-------SCSEEEEETTTCCB--CBCCCC----CSSCEEEEEECSSSSCEEEEEETT
T ss_pred --ccccccccccccccccccccc-------cccccccccccccc--cccccc----cccccccccccccceeeecccccc
Confidence 1122333 455555555321 12355666655432 111100 00011122222 34467777766
Q ss_pred CCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEE
Q 006473 256 KEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELY 334 (643)
Q Consensus 256 ~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~ 334 (643)
+. +.+||..+.+-...... ....-.+++.. ++.+++.|+.. +.+.
T Consensus 169 ~~----------------i~i~d~~~~~~~~~~~~----~~~~i~~v~~~p~~~~l~~~~~d--------------~~v~ 214 (311)
T d1nr0a1 169 NT----------------VAIFEGPPFKFKSTFGE----HTKFVHSVRYNPDGSLFASTGGD--------------GTIV 214 (311)
T ss_dssp SC----------------EEEEETTTBEEEEEECC----CSSCEEEEEECTTSSEEEEEETT--------------SCEE
T ss_pred cc----------------ccccccccccccccccc----ccccccccccCcccccccccccc--------------cccc
Confidence 54 77888877654443221 11122233333 56777777643 3488
Q ss_pred EEECCCCc
Q 006473 335 GFQLDNHR 342 (643)
Q Consensus 335 ~yd~~t~~ 342 (643)
+||+.++.
T Consensus 215 ~~d~~~~~ 222 (311)
T d1nr0a1 215 LYNGVDGT 222 (311)
T ss_dssp EEETTTCC
T ss_pred cccccccc
Confidence 89987754
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=93.98 E-value=2.6 Score=39.67 Aligned_cols=119 Identities=12% Similarity=0.069 Sum_probs=63.7
Q ss_pred CCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCcc
Q 006473 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEF 144 (643)
Q Consensus 66 P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~ 144 (643)
|.+.+-..+++.| +++||+.... .+.||++++... +..+... +..-++++.- ++.+||.+-..
T Consensus 25 p~~~~~e~iAv~p--dG~l~vt~~~---------~~~I~~i~p~g~-~~~~~~~----~~~~~gla~~~dG~l~v~~~~~ 88 (302)
T d2p4oa1 25 PVNTFLENLASAP--DGTIFVTNHE---------VGEIVSITPDGN-QQIHATV----EGKVSGLAFTSNGDLVATGWNA 88 (302)
T ss_dssp CTTCCEEEEEECT--TSCEEEEETT---------TTEEEEECTTCC-EEEEEEC----SSEEEEEEECTTSCEEEEEECT
T ss_pred CCCCCcCCEEECC--CCCEEEEeCC---------CCEEEEEeCCCC-EEEEEcC----CCCcceEEEcCCCCeEEEecCC
Confidence 3444444666776 7889886551 247899998865 3333321 1122333333 67788876321
Q ss_pred CCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 145 TSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 145 ~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
. .-..+.++.....-..+.. .+.....+.++.. ++.+|+.-. ....+|.+|+....
T Consensus 89 ~---------~~~~~~~~~~~~~~~~~~~--~~~~~~~n~i~~~~~g~~~v~~~---------~~~~i~~~~~~~~~ 145 (302)
T d2p4oa1 89 D---------SIPVVSLVKSDGTVETLLT--LPDAIFLNGITPLSDTQYLTADS---------YRGAIWLIDVVQPS 145 (302)
T ss_dssp T---------SCEEEEEECTTSCEEEEEE--CTTCSCEEEEEESSSSEEEEEET---------TTTEEEEEETTTTE
T ss_pred c---------eEEEEEecccccceeeccc--cCCccccceeEEccCCCEEeecc---------ccccceeeeccCCc
Confidence 1 1123344444455454443 3444444555554 667776422 13578888887664
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=93.95 E-value=2.5 Score=39.35 Aligned_cols=186 Identities=8% Similarity=0.048 Sum_probs=97.6
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCC--ceeeEEEEE--CCEEEEEeCccCCC
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPP--RSAHQAVSW--KNYLYIFGGEFTSP 147 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~p--Rs~ha~~~~--~~~iyvfGG~~~~~ 147 (643)
+.+++.+ ++.|||.-.. .+.|.+||+...--+.+.....+.. ..-+..+.. .+.+++..-.
T Consensus 26 ~gvavd~--dg~i~VaD~~---------n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~---- 90 (279)
T d1q7fa_ 26 SGVAVNA--QNDIIVADTN---------NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS---- 90 (279)
T ss_dssp EEEEECT--TCCEEEEEGG---------GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG----
T ss_pred cEEEEcC--CCCEEEEECC---------CCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccC----
Confidence 5666665 6789998541 2568889977542223322211111 222333333 2333332211
Q ss_pred CCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEecc
Q 006473 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (643)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (643)
....+..++.....+..+.. +.....+..++. ++.+|+.... ...+++|++....-..+..
T Consensus 91 ------~~~~i~~~~~~g~~~~~~~~---~~~~~p~~~avd~~G~i~v~~~~---------~~~~~~~~~~g~~~~~~g~ 152 (279)
T d1q7fa_ 91 ------PTHQIQIYNQYGQFVRKFGA---TILQHPRGVTVDNKGRIIVVECK---------VMRVIIFDQNGNVLHKFGC 152 (279)
T ss_dssp ------GGCEEEEECTTSCEEEEECT---TTCSCEEEEEECTTSCEEEEETT---------TTEEEEECTTSCEEEEEEC
T ss_pred ------CccccccccccccceeecCC---CcccccceeccccCCcEEEEeec---------cceeeEeccCCceeecccc
Confidence 12467788887766666643 222333344443 5678876442 3467788876554444433
Q ss_pred CCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE
Q 006473 227 RFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (643)
Q Consensus 227 ~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~ 305 (643)
. .....-+.+++. ++.||+...... .+++||+.......+...|... .-.++++-
T Consensus 153 ~-----~~~~~~~~i~~d~~g~i~v~d~~~~----------------~V~~~d~~G~~~~~~g~~g~~~---~P~giavD 208 (279)
T d1q7fa_ 153 S-----KHLEFPNGVVVNDKQEIFISDNRAH----------------CVKVFNYEGQYLRQIGGEGITN---YPIGVGIN 208 (279)
T ss_dssp T-----TTCSSEEEEEECSSSEEEEEEGGGT----------------EEEEEETTCCEEEEESCTTTSC---SEEEEEEC
T ss_pred c-----ccccccceeeeccceeEEeeecccc----------------ceeeeecCCceeeeeccccccc---CCcccccc
Confidence 2 112222233333 678888866543 3789998776665654332221 22345553
Q ss_pred -CCeEEEecc
Q 006473 306 -KKRALLFGG 314 (643)
Q Consensus 306 -~~~iyvfGG 314 (643)
.+.|||...
T Consensus 209 ~~G~i~Vad~ 218 (279)
T d1q7fa_ 209 SNGEILIADN 218 (279)
T ss_dssp TTCCEEEEEC
T ss_pred cCCeEEEEEC
Confidence 578998743
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.95 E-value=1.7 Score=41.58 Aligned_cols=151 Identities=9% Similarity=0.045 Sum_probs=72.4
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEE
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLY 212 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~ 212 (643)
++.+++.|+.. ..+..+|..+.+...... ...... ..+... .+..++.|+. ...+.
T Consensus 132 ~~~~l~s~~~d-----------g~v~i~~~~~~~~~~~~~--~h~~~v-~~~~~~~~~~~~~~~~~---------~~~i~ 188 (388)
T d1erja_ 132 DGKFLATGAED-----------RLIRIWDIENRKIVMILQ--GHEQDI-YSLDYFPSGDKLVSGSG---------DRTVR 188 (388)
T ss_dssp TSSEEEEEETT-----------SCEEEEETTTTEEEEEEC--CCSSCE-EEEEECTTSSEEEEEET---------TSEEE
T ss_pred CCCcceecccc-----------cccccccccccccccccc--cccccc-ccccccccccccccccc---------ceeee
Confidence 45666777653 347788888777654432 111111 112222 3445555543 24577
Q ss_pred EEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccC-C
Q 006473 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI-G 291 (643)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~-g 291 (643)
+||..+..-...... ........+...++.+++.|+.++. +.+|+..+......-.. .
T Consensus 189 ~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~d~~----------------i~i~~~~~~~~~~~~~~~~ 247 (388)
T d1erja_ 189 IWDLRTGQCSLTLSI-----EDGVTTVAVSPGDGKYIAAGSLDRA----------------VRVWDSETGFLVERLDSEN 247 (388)
T ss_dssp EEETTTTEEEEEEEC-----SSCEEEEEECSTTCCEEEEEETTSC----------------EEEEETTTCCEEEEEC---
T ss_pred eeecccccccccccc-----ccccccccccCCCCCeEEEEcCCCe----------------EEEeecccCccceeecccc
Confidence 888876654433322 1111111111226677777877654 77888876654433211 1
Q ss_pred CCCCC-c-eeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 292 MPPGP-R-AGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 292 ~~P~~-R-~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
..... . .-.++++. ++..++.|+.. +.+.+||+.+..
T Consensus 248 ~~~~~h~~~v~~l~~s~~~~~l~s~~~d--------------~~i~iwd~~~~~ 287 (388)
T d1erja_ 248 ESGTGHKDSVYSVVFTRDGQSVVSGSLD--------------RSVKLWNLQNAN 287 (388)
T ss_dssp ---CCCSSCEEEEEECTTSSEEEEEETT--------------SEEEEEEC----
T ss_pred ccccCCCCCEEEEEECCCCCEEEEEECC--------------CcEEEEeccCCc
Confidence 10111 1 11233333 46667777643 347888876543
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=93.84 E-value=0.83 Score=42.78 Aligned_cols=39 Identities=18% Similarity=0.343 Sum_probs=24.0
Q ss_pred CCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEE
Q 006473 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK 114 (643)
Q Consensus 66 P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~ 114 (643)
|.......+++.|. +..||+.+.. .+.++.||+.+.+=.
T Consensus 37 ~~~~~p~~l~~spD-G~~l~v~~~~---------~~~v~~~d~~t~~~~ 75 (346)
T d1jmxb_ 37 PDKFGPGTAMMAPD-NRTAYVLNNH---------YGDIYGIDLDTCKNT 75 (346)
T ss_dssp SSCCSSCEEEECTT-SSEEEEEETT---------TTEEEEEETTTTEEE
T ss_pred CCCCCcceEEECCC-CCEEEEEECC---------CCcEEEEeCccCeee
Confidence 33344456777762 3456776652 257899999987543
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.83 E-value=2.4 Score=38.85 Aligned_cols=181 Identities=10% Similarity=0.048 Sum_probs=87.6
Q ss_pred cEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCc
Q 006473 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRS 181 (643)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs 181 (643)
.+..+|+....-...-... .........++..++.|+.. ..+.+||+.+.+-..... .... .
T Consensus 158 ~i~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~l~s~~~d-----------g~i~~~d~~~~~~~~~~~--~~~~-~ 219 (342)
T d2ovrb2 158 MVKVWDPETETCLHTLQGH----TNRVYSLQFDGIHVVSGSLD-----------TSIRVWDVETGNCIHTLT--GHQS-L 219 (342)
T ss_dssp CEEEEEGGGTEEEEEECCC----SSCEEEEEECSSEEEEEETT-----------SCEEEEETTTCCEEEEEC--CCCS-C
T ss_pred eEEEeecccceeeEEEcCc----ccccccccCCCCEEEEEeCC-----------CeEEEeecccceeeeEec--cccc-c
Confidence 4556666655433221111 11222334456666676643 347788887765433222 1111 1
Q ss_pred eeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCc
Q 006473 182 GHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTD 261 (643)
Q Consensus 182 ~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~ 261 (643)
-.++.+.+.+++.|+.+ ..+.+||+...+-...-... .........+..++.+++.|+.++.
T Consensus 220 -v~~~~~~~~~l~s~s~d---------~~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~s~s~Dg~---- 281 (342)
T d2ovrb2 220 -TSGMELKDNILVSGNAD---------STVKIWDIKTGQCLQTLQGP----NKHQSAVTCLQFNKNFVITSSDDGT---- 281 (342)
T ss_dssp -EEEEEEETTEEEEEETT---------SCEEEEETTTCCEEEEECST----TSCSSCEEEEEECSSEEEEEETTSE----
T ss_pred -eeEEecCCCEEEEEcCC---------CEEEEEeccccccccccccc----ceeeeceeecccCCCeeEEEcCCCE----
Confidence 12233344455566642 45888898776543332221 1222222334446677788887654
Q ss_pred cCCCCCCceeeeEEEEeCCCCeeEE-eccCCCCCCCceeeEEEEEC-CeEEEeccccccccCccccccccCCcEEEEECC
Q 006473 262 KNQSEKGIIHSDLWSLDPRTWEWSK-VKKIGMPPGPRAGFSMCVHK-KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD 339 (643)
Q Consensus 262 ~~~~~~~~~~~dv~~yd~~t~~W~~-l~~~g~~P~~R~g~s~~~~~-~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~ 339 (643)
+.+||+.+.+..+ +...........-.+++... +.+++.|+.++ .--..|+++|.+
T Consensus 282 ------------i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dG----------t~~~~l~~~Df~ 339 (342)
T d2ovrb2 282 ------------VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG----------TEETKLLVLDFD 339 (342)
T ss_dssp ------------EEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS----------SSCCEEEEEECC
T ss_pred ------------EEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCC----------CCeeEEEEEeCC
Confidence 7888988776433 22110000011122334444 45666666543 122457888875
Q ss_pred C
Q 006473 340 N 340 (643)
Q Consensus 340 t 340 (643)
.
T Consensus 340 ~ 340 (342)
T d2ovrb2 340 V 340 (342)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Gelatinase B (MMP-9) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.46 E-value=0.69 Score=41.66 Aligned_cols=138 Identities=17% Similarity=0.357 Sum_probs=71.4
Q ss_pred EEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEE----EecC--CCCCCCceeeEEEEE--CCEEEEEeCccC
Q 006473 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK----VISS--PNSPPPRSAHQAVSW--KNYLYIFGGEFT 145 (643)
Q Consensus 74 ~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~----~l~s--~~~P~pRs~ha~~~~--~~~iyvfGG~~~ 145 (643)
++.+ +++||+|-|. .+|+|+.....+. .+.. +.+| ..--++... ++++|+|-|
T Consensus 12 v~~~---~G~~y~Fkg~-----------~ywr~~~~~~~~~~~P~~I~~~w~glp--~~IDAAf~~~~~~k~yfFkg--- 72 (195)
T d1itva_ 12 IAEI---GNQLYLFKDG-----------KYWRFSEGRGSRPQGPFLIADKWPALP--RKLDSVFEEPLSKKLFFFSG--- 72 (195)
T ss_dssp EEEE---TTEEEEEETT-----------EEEEECCSSSCCCEEEEEHHHHCTTSC--SSCSEEEECTTTCCEEEEET---
T ss_pred EEEe---CCEEEEEECC-----------EEEEEeCCCCCcCCCcEEeeeecCCCC--CCccEEEEECCCCEEEEEec---
Confidence 4445 6899999883 5667764433221 1111 1222 222222222 578999977
Q ss_pred CCCCCcceecCeEEEEECCCCcE-EEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceE
Q 006473 146 SPNQERFHHYKDFWMLDLKTNQW-EQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222 (643)
Q Consensus 146 ~~~~~~~~~~~dv~~yD~~t~~W-~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~ 222 (643)
+.+|+|+-.+-.. ..+...++|..-..-.++.. ++++|+|=| +..|+||..+.+-.
T Consensus 73 ----------~~~~~y~~~~~~~Pk~i~~~g~p~~~~~idaa~~~~~g~~Y~FkG-----------~~y~ryd~~~~~v~ 131 (195)
T d1itva_ 73 ----------RQVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG-----------RRLWRFDVKAQMVD 131 (195)
T ss_dssp ----------TEEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET-----------TEEEEEETTTTEEC
T ss_pred ----------CEEEEEcCccccCCEEhhhcCCCCCchheeeEEEcCCCeEEEEec-----------cEEEEEeCCccccc
Confidence 3578887533221 23333344443333333333 679999966 35799998765321
Q ss_pred -----EeccCCCCCCCCCccceeEEEeCCEEEEEcCC
Q 006473 223 -----EIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGY 254 (643)
Q Consensus 223 -----~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~ 254 (643)
.+.....+ +|.. -.++...++.+|+|-|.
T Consensus 132 ~gyPk~i~~~w~g-vp~~--idaAf~~~~~~Yffkg~ 165 (195)
T d1itva_ 132 PRSASEVDRMFPG-VPLD--THDVFQFREKAYFCQDR 165 (195)
T ss_dssp GGGCEEHHHHSTT-SCSS--CSEEEEETTEEEEEETT
T ss_pred CCCccchhhhcCC-CCCC--CcEEEEeCCcEEEEECC
Confidence 11111111 1222 23445568889998664
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=93.35 E-value=4.2 Score=42.38 Aligned_cols=121 Identities=15% Similarity=0.196 Sum_probs=69.6
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCC--cEEEecCCC------CCCCceeeEEEEECCEEEEEeCccCCCCCCcc
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPN------SPPPRSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~------~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~ 152 (643)
++.||+... .+.|+++|..++ .|+.-+... ..........+..++.||+...
T Consensus 77 ~g~vyv~t~----------~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~---------- 136 (573)
T d1kb0a2 77 DGIMYVSAS----------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW---------- 136 (573)
T ss_dssp TTEEEEECG----------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT----------
T ss_pred CCEEEEECC----------CCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEec----------
Confidence 788888654 357999999987 487532211 0111122345556888877532
Q ss_pred eecCeEEEEECCCCc--EEEeccCCCC-CCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc--eEEeccC
Q 006473 153 HHYKDFWMLDLKTNQ--WEQLNLKGCP-SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPR 227 (643)
Q Consensus 153 ~~~~dv~~yD~~t~~--W~~~~~~g~P-~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~ 227 (643)
-..++.+|..+.+ |..-...+.. ........+++++.+|+ |+..... .....|..||..+.+ |+.-...
T Consensus 137 --~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~viv-g~~~~~~---~~~G~v~a~D~~TG~~~W~~~t~~ 210 (573)
T d1kb0a2 137 --DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVII-GNGGAEY---GVRGYITAYDAETGERKWRWFSVP 210 (573)
T ss_dssp --TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEE-CCBCTTT---CCBCEEEEEETTTCCEEEEEESSC
T ss_pred --ccceeeeccccccceecccCccCCcceEEeecceEEEeccEEE-eeccccc---cccceEEEEecCCccceeeeeecc
Confidence 1458899988875 7764322111 11112234567888776 4332211 124579999999876 8765443
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.11 E-value=3.2 Score=38.15 Aligned_cols=163 Identities=12% Similarity=0.070 Sum_probs=80.3
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (643)
..+..||..+.+........ ... ..+.+.. .+..++.|+.. ..+.+||..+........ +...
T Consensus 181 ~~i~~~d~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~d-----------~~i~i~d~~~~~~~~~~~-~h~~- 244 (355)
T d1nexb2 181 NTLIVWDVAQMKCLYILSGH--TDR-IYSTIYDHERKRCISASMD-----------TTIRIWDLENGELMYTLQ-GHTA- 244 (355)
T ss_dssp SCEEEEETTTTEEEEEECCC--SSC-EEEEEEETTTTEEEEEETT-----------SCEEEEETTTCCEEEEEC-CCSS-
T ss_pred ceeeeeecccccceeeeecc--ccc-cccccccccceeeeccccc-----------ceEEeeeccccccccccc-cccc-
Confidence 36778888887655443322 122 2222222 44555555532 347788888776443321 1111
Q ss_pred CceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCC
Q 006473 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVS 259 (643)
Q Consensus 180 Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~ 259 (643)
.-.++.+.+.+++.|+.+ ..+.+||+.+..-...... .......+...++.+++. |.++.
T Consensus 245 --~v~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~-g~d~~-- 304 (355)
T d1nexb2 245 --LVGLLRLSDKFLVSAAAD---------GSIRGWDANDYSRKFSYHH------TNLSAITTFYVSDNILVS-GSENQ-- 304 (355)
T ss_dssp --CCCEEEECSSEEEEECTT---------SEEEEEETTTCCEEEEEEC------TTCCCCCEEEECSSEEEE-EETTE--
T ss_pred --cccccccccceeeeeecc---------cccccccccccceeccccc------CCceEEEEEcCCCCEEEE-EeCCE--
Confidence 123445566666777643 3577888876543221111 122222333446666554 44332
Q ss_pred CccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEecccc
Q 006473 260 TDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVV 316 (643)
Q Consensus 260 ~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~ 316 (643)
+.+||+.+.+.......+ +.. .-.+++..++.+++.|+.+
T Consensus 305 --------------i~vwd~~tg~~~~~~~~~--~~~-~V~~v~~~~~~~~~~~s~d 344 (355)
T d1nexb2 305 --------------FNIYNLRSGKLVHANILK--DAD-QIWSVNFKGKTLVAAVEKD 344 (355)
T ss_dssp --------------EEEEETTTCCBCCSCTTT--TCS-EEEEEEEETTEEEEEEESS
T ss_pred --------------EEEEECCCCCEEEEEecC--CCC-CEEEEEEcCCeEEEEEECC
Confidence 778898876543211111 111 2234555677666656544
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.08 E-value=1.9 Score=40.90 Aligned_cols=149 Identities=14% Similarity=0.096 Sum_probs=72.9
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEE
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLY 212 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~ 212 (643)
++.+++.|+.. ..+.+||+................ .-..++.. ++.+++.|+. ...+.
T Consensus 108 dg~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~---------d~~i~ 166 (337)
T d1gxra_ 108 DGCTLIVGGEA-----------STLSIWDLAAPTPRIKAELTSSAP-ACYALAISPDSKVCFSCCS---------DGNIA 166 (337)
T ss_dssp TSSEEEEEESS-----------SEEEEEECCCC--EEEEEEECSSS-CEEEEEECTTSSEEEEEET---------TSCEE
T ss_pred CCCEEEEeecc-----------cccccccccccccccccccccccc-ccccccccccccccccccc---------ccccc
Confidence 55666777652 357788887666544332101111 11222222 4455555553 23578
Q ss_pred EEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCC
Q 006473 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG 291 (643)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g 291 (643)
.|++.+.+-...... ....-.+++.. ++..+++|+..+. +.+||+.+.+-......
T Consensus 167 ~~~~~~~~~~~~~~~------~~~~v~~l~~s~~~~~~~~~~~d~~----------------v~i~d~~~~~~~~~~~~- 223 (337)
T d1gxra_ 167 VWDLHNQTLVRQFQG------HTDGASCIDISNDGTKLWTGGLDNT----------------VRSWDLREGRQLQQHDF- 223 (337)
T ss_dssp EEETTTTEEEEEECC------CSSCEEEEEECTTSSEEEEEETTSE----------------EEEEETTTTEEEEEEEC-
T ss_pred ccccccccccccccc------ccccccccccccccccccccccccc----------------ccccccccceeeccccc-
Confidence 888877653333221 11111222222 5566677766544 67788776542222111
Q ss_pred CCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCCCcEE
Q 006473 292 MPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (643)
Q Consensus 292 ~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (643)
...-.++++. ++..++.|+.. ..+.+||+.+..-.
T Consensus 224 ----~~~i~~l~~~~~~~~l~~~~~d--------------~~i~i~d~~~~~~~ 259 (337)
T d1gxra_ 224 ----TSQIFSLGYCPTGEWLAVGMES--------------SNVEVLHVNKPDKY 259 (337)
T ss_dssp ----SSCEEEEEECTTSSEEEEEETT--------------SCEEEEETTSSCEE
T ss_pred ----ccceEEEEEcccccccceeccc--------------cccccccccccccc
Confidence 1112334443 45666666643 34888888776543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=92.97 E-value=3.8 Score=38.57 Aligned_cols=148 Identities=10% Similarity=-0.063 Sum_probs=74.1
Q ss_pred cEEEEECCCCcEEEecCCCC--CCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC
Q 006473 102 DLYRYDVEKQEWKVISSPNS--PPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (643)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~--P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (643)
.+++||+.+++++.+..... |..|.....+--++.||+........ ...-..|....++.+.+.. ...
T Consensus 79 gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~-------~~~g~l~~~~~g~~~~~~~---~~~ 148 (295)
T d2ghsa1 79 GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAE-------TGAGSIYHVAKGKVTKLFA---DIS 148 (295)
T ss_dssp EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCC-------TTCEEEEEEETTEEEEEEE---EES
T ss_pred ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEecccccc-------ccceeEeeecCCcEEEEee---ccC
Confidence 58999999999998865332 22344444333367777754322111 1222334334566555543 111
Q ss_pred CceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCC------ceEEeccCCCCCCCCCccceeEEEe-CCEEEE
Q 006473 180 RSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF------KWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFL 250 (643)
Q Consensus 180 Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~------~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv 250 (643)
.. .+.+.. ++.+|+..- ....+|+|++... ........+ ...-.-.++++- ++.|||
T Consensus 149 ~~-Ng~~~s~d~~~l~~~dt---------~~~~I~~~~~d~~~~~~~~~~~~~~~~~----~~~g~pdG~~vD~~GnlWv 214 (295)
T d2ghsa1 149 IP-NSICFSPDGTTGYFVDT---------KVNRLMRVPLDARTGLPTGKAEVFIDST----GIKGGMDGSVCDAEGHIWN 214 (295)
T ss_dssp SE-EEEEECTTSCEEEEEET---------TTCEEEEEEBCTTTCCBSSCCEEEEECT----TSSSEEEEEEECTTSCEEE
T ss_pred Cc-ceeeecCCCceEEEeec---------ccceeeEeeecccccccccceEEEeccC----cccccccceEEcCCCCEEe
Confidence 11 123332 445666532 1456888876421 111111111 011111234443 777887
Q ss_pred EcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEecc
Q 006473 251 YGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (643)
Q Consensus 251 ~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~ 289 (643)
..-..+ .|++||+.......+..
T Consensus 215 a~~~~g----------------~V~~~dp~G~~~~~i~l 237 (295)
T d2ghsa1 215 ARWGEG----------------AVDRYDTDGNHIARYEV 237 (295)
T ss_dssp EEETTT----------------EEEEECTTCCEEEEEEC
T ss_pred eeeCCC----------------ceEEecCCCcEeeEecC
Confidence 631111 28899998888877754
|
| >d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase (MMP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.84 E-value=1.9 Score=38.57 Aligned_cols=152 Identities=11% Similarity=0.201 Sum_probs=81.3
Q ss_pred EEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEe--cc--CCCCCCCceeEEEEE--CCEEEEEeeeecCC
Q 006473 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL--NL--KGCPSPRSGHRMVLY--KHKIIVFGGFYDTL 202 (643)
Q Consensus 129 a~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~--~~--~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~ 202 (643)
+++.+++.||+|-|. -+|+++......... .. .++|... -++... ++++|+|-|
T Consensus 16 Av~~~~G~~y~Fkg~-------------~~wr~~~~~~~~~p~~i~~~w~glp~~I--DAAf~~~~~~~~yfFkG----- 75 (195)
T d1su3a2 16 AITTIRGEVMFFKDR-------------FYMRTNPFYPEVELNFISVFWPQLPNGL--EAAYEFADRDEVRFFKG----- 75 (195)
T ss_dssp EEEEETTEEEEEETT-------------EEEECCTTSSSCEEEEGGGTCTTSCSSC--CEEEEEGGGTEEEEEET-----
T ss_pred EEEEcCCeEEEEeCC-------------EEEEeeCCCCccCccchHhhCcCCCCcc--cceEEecCCcEEEEECC-----
Confidence 666679999999884 356766555443221 11 1123322 233334 579999987
Q ss_pred CceeeeccEEEEEcCCCc---eEEeccCCCCCCCCC--ccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEE
Q 006473 203 REVRYYNDLYVFDLDQFK---WQEIKPRFGSMWPSP--RSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWS 276 (643)
Q Consensus 203 ~~~~~~~dv~~yD~~t~~---W~~v~~~~~~~~P~~--R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~ 276 (643)
+.+|+|+-.+.. -..+.... + .|.. +...++... ++++|+|-|- ..|+
T Consensus 76 ------~~y~~y~~~~~~~g~p~~i~~~~-G-~p~~~~~idaa~~~~~~~~~Y~FkG~------------------~y~r 129 (195)
T d1su3a2 76 ------NKYWAVQGQNVLHGYPKDIYSSF-G-FPRTVKHIDAALSEENTGKTYFFVAN------------------KYWR 129 (195)
T ss_dssp ------TEEEEEETTEECTTCSEEHHHHH-C-CCTTCCCCCEEEEETTTTEEEEEETT------------------EEEE
T ss_pred ------cEEEEEcCCccccCCCccchhhc-C-CCCCccccccccccCCCCeEEEEeCC------------------EEEE
Confidence 457788743211 11111100 1 1111 122222222 6799999773 3789
Q ss_pred EeCCCCeeEE-----ecc--CCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEE
Q 006473 277 LDPRTWEWSK-----VKK--IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (643)
Q Consensus 277 yd~~t~~W~~-----l~~--~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (643)
||..+.+-.. +.. .| .|. +.- ++...++++|+|=|. ..|+||..+++=..
T Consensus 130 y~~~~~~vd~gyPk~I~~~w~G-vp~-~iD-AAf~~~g~~YfFkg~----------------~y~r~~~~~~~v~~ 186 (195)
T d1su3a2 130 YDEYKRSMDPGYPKMIAHDFPG-IGH-KVD-AVFMKDGFFYFFHGT----------------RQYKFDPKTKRILT 186 (195)
T ss_dssp EETTTTEECSSCSEEHHHHSTT-SCS-CCS-EEEEETTEEEEEETT----------------EEEEEETTTTEEEE
T ss_pred EeccCccccCCcccccccccCC-CCC-Ccc-EEEEECCeEEEEECC----------------EEEEEeCCcCEEEe
Confidence 9987754211 111 12 222 222 344568999999884 37889987765443
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=92.82 E-value=1.7 Score=39.94 Aligned_cols=140 Identities=7% Similarity=-0.004 Sum_probs=69.4
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEE
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLY 212 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~ 212 (643)
++.+++.|+.. ..+..||+.+.+...+.....+. .-.+++.. ++.+++.|+. ...+.
T Consensus 147 ~~~~l~~g~~d-----------g~i~~~d~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~---------d~~i~ 204 (299)
T d1nr0a2 147 DKQFVAVGGQD-----------SKVHVYKLSGASVSEVKTIVHPA--EITSVAFSNNGAFLVATDQ---------SRKVI 204 (299)
T ss_dssp TSCEEEEEETT-----------SEEEEEEEETTEEEEEEEEECSS--CEEEEEECTTSSEEEEEET---------TSCEE
T ss_pred ccccccccccc-----------ccccccccccccccccccccccc--ccccccccccccccccccc---------ccccc
Confidence 55667777642 45778888777665543311111 11222222 3445555553 24588
Q ss_pred EEEcCCCceEEeccCCCCCCCCCccc-eeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccC
Q 006473 213 VFDLDQFKWQEIKPRFGSMWPSPRSG-FQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI 290 (643)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~R~~-~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~ 290 (643)
+||+.+......... ....... .+++.. ++.+++.||.++. +.+||+.+.....+...
T Consensus 205 ~~~~~~~~~~~~~~~----~~~h~~~v~~l~~s~~~~~l~sgs~dg~----------------i~iwd~~~~~~~~~~~~ 264 (299)
T d1nr0a2 205 PYSVANNFELAHTNS----WTFHTAKVACVSWSPDNVRLATGSLDNS----------------VIVWNMNKPSDHPIIIK 264 (299)
T ss_dssp EEEGGGTTEESCCCC----CCCCSSCEEEEEECTTSSEEEEEETTSC----------------EEEEETTCTTSCCEEET
T ss_pred ccccccccccccccc----ccccccccccccccccccceEEEcCCCE----------------EEEEECCCCCcceEEEe
Confidence 899877654322111 0111111 122222 6677788887655 77888776544333221
Q ss_pred CCCCCCceeeEEEEECCeEEEecccc
Q 006473 291 GMPPGPRAGFSMCVHKKRALLFGGVV 316 (643)
Q Consensus 291 g~~P~~R~g~s~~~~~~~iyvfGG~~ 316 (643)
.... ...-.+++..++..++.||.+
T Consensus 265 ~~~~-~~~v~~~~~~~~~~l~s~s~D 289 (299)
T d1nr0a2 265 GAHA-MSSVNSVIWLNETTIVSAGQD 289 (299)
T ss_dssp TSST-TSCEEEEEEEETTEEEEEETT
T ss_pred cCCC-CCcEEEEEECCCCEEEEEeCC
Confidence 1111 111223344566677777753
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=92.36 E-value=3.1 Score=39.59 Aligned_cols=215 Identities=9% Similarity=-0.006 Sum_probs=109.8
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCc
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~ 151 (643)
..++.+ ++.||+..= ..+.|++|++.++........ ....-+.++.. ++.|||..-...
T Consensus 44 G~~~D~--~G~Ly~~D~---------~~g~I~ri~p~g~~~~~~~~~---~~~~p~gla~~~dG~l~va~~~~~------ 103 (319)
T d2dg1a1 44 GLNFDR--QGQLFLLDV---------FEGNIFKINPETKEIKRPFVS---HKANPAAIKIHKDGRLFVCYLGDF------ 103 (319)
T ss_dssp EEEECT--TSCEEEEET---------TTCEEEEECTTTCCEEEEEEC---SSSSEEEEEECTTSCEEEEECTTS------
T ss_pred eCEECC--CCCEEEEEC---------CCCEEEEEECCCCeEEEEEeC---CCCCeeEEEECCCCCEEEEecCCC------
Confidence 345554 566887642 124789999998865544321 11223444444 678888742111
Q ss_pred ceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCC
Q 006473 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSM 231 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~ 231 (643)
.....++.++..+.....+.....+..+.+-..+--++.||+-. .... ...-...++++++....++.+...
T Consensus 104 -~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd-~~~~--~~~~~g~v~~~~~dg~~~~~~~~~---- 175 (319)
T d2dg1a1 104 -KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTD-FRGY--STNPLGGVYYVSPDFRTVTPIIQN---- 175 (319)
T ss_dssp -SSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEE-CCCB--TTBCCEEEEEECTTSCCEEEEEEE----
T ss_pred -ccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecc-cccc--cccCcceeEEEecccceeEEEeec----
Confidence 12356888888887766554321122222222222367787642 2111 112345688999887766655332
Q ss_pred CCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCC---eeEEeccC-CCCCCCceeeEEEEE
Q 006473 232 WPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW---EWSKVKKI-GMPPGPRAGFSMCVH 305 (643)
Q Consensus 232 ~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~---~W~~l~~~-g~~P~~R~g~s~~~~ 305 (643)
...| ..++.. ++.||+.--.. +.+++|++... .+...... ........-..|++-
T Consensus 176 ~~~p---nGia~s~dg~~lyvad~~~----------------~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD 236 (319)
T d2dg1a1 176 ISVA---NGIALSTDEKVLWVTETTA----------------NRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID 236 (319)
T ss_dssp ESSE---EEEEECTTSSEEEEEEGGG----------------TEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB
T ss_pred ccee---eeeeeccccceEEEecccC----------------CceEEEEEcCCCceeccccceeeeccCCccceeeeeEc
Confidence 0111 123332 55688764332 34788875432 11111100 001111122356664
Q ss_pred -CCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 306 -~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
+++|||.--. .+.|.+||++...-..+.+
T Consensus 237 ~~G~l~Va~~~--------------~g~V~~~~p~G~~l~~i~~ 266 (319)
T d2dg1a1 237 SDDNLYVAMYG--------------QGRVLVFNKRGYPIGQILI 266 (319)
T ss_dssp TTCCEEEEEET--------------TTEEEEECTTSCEEEEEEC
T ss_pred CCCCEEEEEcC--------------CCEEEEECCCCcEEEEEeC
Confidence 6788887421 2459999997665556655
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=91.74 E-value=4.5 Score=38.36 Aligned_cols=174 Identities=10% Similarity=0.027 Sum_probs=88.8
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCc
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~ 151 (643)
+.+++.+ ++.|||..-..+. ....++.++........+.....+..|.+-.++.-++.||+..-.....
T Consensus 85 ~gla~~~--dG~l~va~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~---- 153 (319)
T d2dg1a1 85 AAIKIHK--DGRLFVCYLGDFK-----STGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYST---- 153 (319)
T ss_dssp EEEEECT--TSCEEEEECTTSS-----SCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTT----
T ss_pred eEEEECC--CCCEEEEecCCCc-----cceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccc----
Confidence 4455554 5677765320000 1245777888877766554433233333333333367888764322111
Q ss_pred ceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCc---e---EE
Q 006473 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK---W---QE 223 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~---W---~~ 223 (643)
.....++++++....++.+... +..| .++++- ++.||+.-- ..+.+++|++.... + ..
T Consensus 154 -~~~g~v~~~~~dg~~~~~~~~~-~~~p---nGia~s~dg~~lyvad~---------~~~~I~~~d~~~~g~~~~~~~~~ 219 (319)
T d2dg1a1 154 -NPLGGVYYVSPDFRTVTPIIQN-ISVA---NGIALSTDEKVLWVTET---------TANRLHRIALEDDGVTIQPFGAT 219 (319)
T ss_dssp -BCCEEEEEECTTSCCEEEEEEE-ESSE---EEEEECTTSSEEEEEEG---------GGTEEEEEEECTTSSSEEEEEEE
T ss_pred -cCcceeEEEecccceeEEEeec-ccee---eeeeeccccceEEEecc---------cCCceEEEEEcCCCceeccccce
Confidence 1245689999988777765431 1111 233332 457887632 25678999875431 1 11
Q ss_pred eccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccC
Q 006473 224 IKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI 290 (643)
Q Consensus 224 v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~ 290 (643)
+.... .....-..+++- ++.|||.....+ .|.+|++....-..+..+
T Consensus 220 ~~~~~----~~~~~PdGl~vD~~G~l~Va~~~~g----------------~V~~~~p~G~~l~~i~~P 267 (319)
T d2dg1a1 220 IPYYF----TGHEGPDSCCIDSDDNLYVAMYGQG----------------RVLVFNKRGYPIGQILIP 267 (319)
T ss_dssp EEEEC----CSSSEEEEEEEBTTCCEEEEEETTT----------------EEEEECTTSCEEEEEECT
T ss_pred eeecc----CCccceeeeeEcCCCCEEEEEcCCC----------------EEEEECCCCcEEEEEeCC
Confidence 11110 111111234443 777888743222 388999876666666543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=91.63 E-value=4.6 Score=36.43 Aligned_cols=178 Identities=12% Similarity=-0.002 Sum_probs=86.6
Q ss_pred cEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC
Q 006473 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (643)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (643)
.+..++..+.+....... ....+.++.. +..+++.+.. -..+..++..+........ ..
T Consensus 97 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~dg~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~----~~ 157 (301)
T d1l0qa2 97 TLSVIDTTSNTVAGTVKT----GKSPLGLALSPDGKKLYVTNNG-----------DKTVSVINTVTKAVINTVS----VG 157 (301)
T ss_dssp EEEEEETTTTEEEEEEEC----SSSEEEEEECTTSSEEEEEETT-----------TTEEEEEETTTTEEEEEEE----CC
T ss_pred eeeecccccceeeeeccc----cccceEEEeecCCCeeeeeecc-----------ccceeeeeccccceeeecc----cC
Confidence 456677777654433221 1122233332 3455555432 1356778888776554322 11
Q ss_pred CceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCC
Q 006473 180 RSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKE 257 (643)
Q Consensus 180 Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~ 257 (643)
..-+.++.. ++.+|+.+.. ...+..++............ +..-.+..+...+..+|+.+.-..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~v~~~~~~- 222 (301)
T d1l0qa2 158 RSPKGIAVTPDGTKVYVANFD---------SMSISVIDTVTNSVIDTVKV-----EAAPSGIAVNPEGTKAYVTNVDKY- 222 (301)
T ss_dssp SSEEEEEECTTSSEEEEEETT---------TTEEEEEETTTTEEEEEEEC-----SSEEEEEEECTTSSEEEEEEECSS-
T ss_pred CCceEEEeeccccceeeeccc---------ccccccccccceeeeecccc-----cCCcceeeccccccccccccccce-
Confidence 122222332 3455554331 23455666666555444333 111122222222666666543211
Q ss_pred CCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-C-CeEEEeccccccccCccccccccCCcEEE
Q 006473 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-K-KRALLFGGVVDMEMKGDVIMSLFLNELYG 335 (643)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~-~~iyvfGG~~~~~~~~~~~~~~~~ndl~~ 335 (643)
.+.++++|+.+.+-...-..+. .-.++++- + .+|||.++.. +.|.+
T Consensus 223 -------------~~~v~v~D~~t~~~~~~~~~~~-----~~~~va~spdg~~l~va~~~~--------------~~i~v 270 (301)
T d1l0qa2 223 -------------FNTVSMIDTGTNKITARIPVGP-----DPAGIAVTPDGKKVYVALSFC--------------NTVSV 270 (301)
T ss_dssp -------------CCEEEEEETTTTEEEEEEECCS-----SEEEEEECTTSSEEEEEETTT--------------TEEEE
T ss_pred -------------eeeeeeeecCCCeEEEEEcCCC-----CEEEEEEeCCCCEEEEEECCC--------------CeEEE
Confidence 2358899988775433222111 12344443 3 4577776642 56999
Q ss_pred EECCCCcEEE
Q 006473 336 FQLDNHRWYP 345 (643)
Q Consensus 336 yd~~t~~W~~ 345 (643)
||+.+++-..
T Consensus 271 ~D~~t~~~~~ 280 (301)
T d1l0qa2 271 IDTATNTITA 280 (301)
T ss_dssp EETTTTEEEE
T ss_pred EECCCCeEEE
Confidence 9999986543
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=91.39 E-value=2.8 Score=43.75 Aligned_cols=125 Identities=13% Similarity=0.072 Sum_probs=71.0
Q ss_pred eEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCc--EEEeccCC------CCCCCceeEEEEECCEEEEEeeee
Q 006473 128 HQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKG------CPSPRSGHRMVLYKHKIIVFGGFY 199 (643)
Q Consensus 128 ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g------~P~~Rs~h~~~~~~~~lyvfGG~~ 199 (643)
.+=+++++.|||..+ .+.|+.+|..|++ |+.-.... ..........+.++++||+...
T Consensus 60 stPiv~~g~vyv~t~------------~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-- 125 (560)
T d1kv9a2 60 ATPLFHDGVIYTSMS------------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-- 125 (560)
T ss_dssp CCCEEETTEEEEEEG------------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT--
T ss_pred eCCEEECCEEEEECC------------CCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeC--
Confidence 344677999998764 2568999999884 87532110 0112223345667888876532
Q ss_pred cCCCceeeeccEEEEEcCCCc--eEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEE
Q 006473 200 DTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSL 277 (643)
Q Consensus 200 ~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~y 277 (643)
-..|+.+|..+.+ |......+. +......+.+++++.+|+- +.... ......+..|
T Consensus 126 --------~g~l~Alda~tG~~~w~~~~~~~~---~~~~~~~~p~v~~~~vivg-~~~~~----------~~~~G~v~a~ 183 (560)
T d1kv9a2 126 --------DGRLIALDAKTGKAIWSQQTTDPA---KPYSITGAPRVVKGKVIIG-NGGAE----------YGVRGFVSAY 183 (560)
T ss_dssp --------TSEEEEEETTTCCEEEEEECSCTT---SSCBCCSCCEEETTEEEEC-CBCTT----------TCCBCEEEEE
T ss_pred --------CCEEEEEECCCCcEEeccCccCcc---cceeeeeeeeeecCccccc-cccee----------ccccceEEEE
Confidence 2458889988764 765433211 1122223345557776653 33222 1233568899
Q ss_pred eCCCC--eeEEec
Q 006473 278 DPRTW--EWSKVK 288 (643)
Q Consensus 278 d~~t~--~W~~l~ 288 (643)
|..|. .|..-.
T Consensus 184 D~~TG~~~W~~~t 196 (560)
T d1kv9a2 184 DADTGKLAWRFYT 196 (560)
T ss_dssp ETTTCCEEEEEES
T ss_pred ECCCceEEeeeee
Confidence 98765 576643
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=91.34 E-value=7.5 Score=40.36 Aligned_cols=120 Identities=11% Similarity=0.134 Sum_probs=67.2
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECC-CC--cEEEecCCCCCCCce-------eeEEEEECCEEEEEeCccCCCCCC
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVE-KQ--EWKVISSPNSPPPRS-------AHQAVSWKNYLYIFGGEFTSPNQE 150 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~-~~--~W~~l~s~~~P~pRs-------~ha~~~~~~~iyvfGG~~~~~~~~ 150 (643)
++.|||..+. -+.||.+|.. ++ .|+.-+... +..+. ...++..+++||+...
T Consensus 62 ~g~vyv~t~~---------~~~v~Alda~~tG~~~W~~~~~~~-~~~~~~~~~~~~~rg~a~~~~~i~~~~~-------- 123 (571)
T d2ad6a1 62 GDMMYVHSAF---------PNNTYALNLNDPGKIVWQHKPKQD-ASTKAVMCCDVVDRGLAYGAGQIVKKQA-------- 123 (571)
T ss_dssp TTEEEEECST---------TTCEEEEETTCTTSEEEEECCCCC-GGGGGGCTTCSCCCCCEEETTEEEEECT--------
T ss_pred CCEEEEecCC---------CCeEEEEeCCCCCceEEEecCCCC-cccccccccCcCCCcceeeCCeEEEEeC--------
Confidence 7889887651 2468888863 44 587542211 11111 1224556788876532
Q ss_pred cceecCeEEEEECCCCc--EEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc--eEEecc
Q 006473 151 RFHHYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKP 226 (643)
Q Consensus 151 ~~~~~~dv~~yD~~t~~--W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~ 226 (643)
-..++.+|..|++ |..-.....+.......-+++++.||+-+.... ......|+.||..|.+ |+.-..
T Consensus 124 ----~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~----~~~~G~v~a~D~~TG~~~W~~~t~ 195 (571)
T d2ad6a1 124 ----NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAE----LGVRGAVNAFDLKTGELKWRAFAT 195 (571)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGG----GTCCCEEEEEETTTCCEEEEEESS
T ss_pred ----CCcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeecccc----ccccCcEEEEECCCCcEEEEEecc
Confidence 1468899999885 765321111222222334678888887443221 1134579999998765 865443
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.08 E-value=6.2 Score=36.91 Aligned_cols=70 Identities=13% Similarity=0.064 Sum_probs=39.5
Q ss_pred CEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCc
Q 006473 190 HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGI 269 (643)
Q Consensus 190 ~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ 269 (643)
+.+++.||.+ ..|.+||+.+.+.... ......+.....++....++.+++.|+.++.
T Consensus 218 ~~~l~s~~~d---------~~i~iwd~~~~~~~~~--l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~------------ 274 (325)
T d1pgua1 218 GEFVITVGSD---------RKISCFDGKSGEFLKY--IEDDQEPVQGGIFALSWLDSQKFATVGADAT------------ 274 (325)
T ss_dssp CCEEEEEETT---------CCEEEEETTTCCEEEE--CCBTTBCCCSCEEEEEESSSSEEEEEETTSE------------
T ss_pred ceeccccccc---------cceeeeeecccccccc--ccccccccccceeeeeccCCCEEEEEeCCCe------------
Confidence 5667767643 3588899887764322 2111112222223333346777788887654
Q ss_pred eeeeEEEEeCCCCeeEE
Q 006473 270 IHSDLWSLDPRTWEWSK 286 (643)
Q Consensus 270 ~~~dv~~yd~~t~~W~~ 286 (643)
+.+||+.+.+-.+
T Consensus 275 ----i~iwd~~~~~~~~ 287 (325)
T d1pgua1 275 ----IRVWDVTTSKCVQ 287 (325)
T ss_dssp ----EEEEETTTTEEEE
T ss_pred ----EEEEECCCCCEEE
Confidence 6788888776433
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=91.07 E-value=0.94 Score=41.89 Aligned_cols=141 Identities=9% Similarity=0.089 Sum_probs=69.8
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~ 159 (643)
++.+++.|+. -+.+..||+.+.+...+.....+. .-.+++.. ++..++.|+.. ..++
T Consensus 147 ~~~~l~~g~~---------dg~i~~~d~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d-----------~~i~ 204 (299)
T d1nr0a2 147 DKQFVAVGGQ---------DSKVHVYKLSGASVSEVKTIVHPA--EITSVAFSNNGAFLVATDQS-----------RKVI 204 (299)
T ss_dssp TSCEEEEEET---------TSEEEEEEEETTEEEEEEEEECSS--CEEEEEECTTSSEEEEEETT-----------SCEE
T ss_pred cccccccccc---------cccccccccccccccccccccccc--cccccccccccccccccccc-----------cccc
Confidence 5566667762 246788888877665443211111 11222222 34555556532 3588
Q ss_pred EEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCcc
Q 006473 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237 (643)
Q Consensus 160 ~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~ 237 (643)
+||+.++........ .......-.++.+ ++.+++.||.+ +.+.+||+.+.....+.... .....
T Consensus 205 ~~~~~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~sgs~d---------g~i~iwd~~~~~~~~~~~~~----~~~~~ 270 (299)
T d1nr0a2 205 PYSVANNFELAHTNS-WTFHTAKVACVSWSPDNVRLATGSLD---------NSVIVWNMNKPSDHPIIIKG----AHAMS 270 (299)
T ss_dssp EEEGGGTTEESCCCC-CCCCSSCEEEEEECTTSSEEEEEETT---------SCEEEEETTCTTSCCEEETT----SSTTS
T ss_pred ccccccccccccccc-ccccccccccccccccccceEEEcCC---------CEEEEEECCCCCcceEEEec----CCCCC
Confidence 999887665432211 1111111222233 56677777743 35888898876544333221 11111
Q ss_pred ce-eEEEeCCEEEEEcCCCCC
Q 006473 238 GF-QFFVYQDEVFLYGGYSKE 257 (643)
Q Consensus 238 ~~-s~~~~~~~iyv~GG~~~~ 257 (643)
.. +++..++..++.||.++.
T Consensus 271 ~v~~~~~~~~~~l~s~s~D~~ 291 (299)
T d1nr0a2 271 SVNSVIWLNETTIVSAGQDSN 291 (299)
T ss_dssp CEEEEEEEETTEEEEEETTSC
T ss_pred cEEEEEECCCCEEEEEeCCCE
Confidence 11 222335556677777654
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.86 E-value=6.5 Score=36.76 Aligned_cols=68 Identities=12% Similarity=0.148 Sum_probs=42.2
Q ss_pred CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccc
Q 006473 245 QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDV 324 (643)
Q Consensus 245 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~ 324 (643)
.+.+++.||.++. +.+||+.+.+....-.....|.....++++..+++.++.||..
T Consensus 217 ~~~~l~s~~~d~~----------------i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D-------- 272 (325)
T d1pgua1 217 SGEFVITVGSDRK----------------ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGAD-------- 272 (325)
T ss_dssp TCCEEEEEETTCC----------------EEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETT--------
T ss_pred cceeccccccccc----------------eeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCC--------
Confidence 4577787887765 7788987776543322112222223344555677788888753
Q ss_pred cccccCCcEEEEECCCCc
Q 006473 325 IMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 325 ~~~~~~ndl~~yd~~t~~ 342 (643)
..|.+||+.+++
T Consensus 273 ------~~i~iwd~~~~~ 284 (325)
T d1pgua1 273 ------ATIRVWDVTTSK 284 (325)
T ss_dssp ------SEEEEEETTTTE
T ss_pred ------CeEEEEECCCCC
Confidence 348899998875
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=89.84 E-value=1.5 Score=41.09 Aligned_cols=143 Identities=11% Similarity=0.099 Sum_probs=76.2
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWP 233 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P 233 (643)
..+++||..++...++.. ..+. ..+.+ +++.++++|..+ -..+++||..+..-..+... +
T Consensus 24 g~v~v~d~~~~~~~~~~~----~~~v--~~~~~spDg~~l~~~~~~~-------g~~v~v~d~~~~~~~~~~~~-----~ 85 (360)
T d1k32a3 24 GQAFIQDVSGTYVLKVPE----PLRI--RYVRRGGDTKVAFIHGTRE-------GDFLGIYDYRTGKAEKFEEN-----L 85 (360)
T ss_dssp TEEEEECTTSSBEEECSC----CSCE--EEEEECSSSEEEEEEEETT-------EEEEEEEETTTCCEEECCCC-----C
T ss_pred CeEEEEECCCCcEEEccC----CCCE--EEEEECCCCCEEEEEEcCC-------CCEEEEEECCCCcEEEeeCC-----C
Confidence 357888888887776632 2232 23444 677666666432 13488999998876665433 1
Q ss_pred CCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEE
Q 006473 234 SPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALL 311 (643)
Q Consensus 234 ~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyv 311 (643)
.. -.+++.. ++..+++++.... ++.++..+.....+.... ......+++. +++.++
T Consensus 86 ~~--v~~~~~spdg~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~----~~~~~~~~~spdg~~la 143 (360)
T d1k32a3 86 GN--VFAMGVDRNGKFAVVANDRFE----------------IMTVDLETGKPTVIERSR----EAMITDFTISDNSRFIA 143 (360)
T ss_dssp CS--EEEEEECTTSSEEEEEETTSE----------------EEEEETTTCCEEEEEECS----SSCCCCEEECTTSCEEE
T ss_pred ce--EEeeeecccccccceeccccc----------------cccccccccceeeeeecc----cccccchhhccceeeee
Confidence 22 2223333 5566666665543 778888777655553321 1111122222 566666
Q ss_pred eccccccccCccccccccCCcEEEEECCCCc
Q 006473 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
+++...... ........+++||+.++.
T Consensus 144 ~~~~~~~~~----~~~~~~~~~~v~d~~~~~ 170 (360)
T d1k32a3 144 YGFPLKHGE----TDGYVMQAIHVYDMEGRK 170 (360)
T ss_dssp EEEEECSST----TCSCCEEEEEEEETTTTE
T ss_pred eeccccccc----eeeccccceeeeccccCc
Confidence 655433111 011223357788887754
|
| >d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Gelatinase B (MMP-9) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.75 E-value=0.96 Score=40.62 Aligned_cols=102 Identities=12% Similarity=0.242 Sum_probs=58.1
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcE-EEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCe
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW-KVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKD 157 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W-~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~d 157 (643)
++++|+|-| +.+|+|+-.+-.. +.|.....|..-....++.. ++++|+|=| +.
T Consensus 64 ~~k~yfFkg-----------~~~~~y~~~~~~~Pk~i~~~g~p~~~~~idaa~~~~~g~~Y~FkG-------------~~ 119 (195)
T d1itva_ 64 SKKLFFFSG-----------RQVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG-------------RR 119 (195)
T ss_dssp TCCEEEEET-----------TEEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET-------------TE
T ss_pred CCEEEEEec-----------CEEEEEcCccccCCEEhhhcCCCCCchheeeEEEcCCCeEEEEec-------------cE
Confidence 578998876 2567776332111 23333223333222222322 689999977 35
Q ss_pred EEEEECCCCcEEEecc-------CCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCC
Q 006473 158 FWMLDLKTNQWEQLNL-------KGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (643)
Q Consensus 158 v~~yD~~t~~W~~~~~-------~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~ 219 (643)
+|+||..++.-..-.+ .++|. .-+++..+++.+|+|-|. ..|+||..+.
T Consensus 120 y~ryd~~~~~v~~gyPk~i~~~w~gvp~--~idaAf~~~~~~Yffkg~-----------~y~r~~~~~~ 175 (195)
T d1itva_ 120 LWRFDVKAQMVDPRSASEVDRMFPGVPL--DTHDVFQFREKAYFCQDR-----------FYWRVSSRSE 175 (195)
T ss_dssp EEEEETTTTEECGGGCEEHHHHSTTSCS--SCSEEEEETTEEEEEETT-----------EEEEEECCTT
T ss_pred EEEEeCCcccccCCCccchhhhcCCCCC--CCcEEEEeCCcEEEEECC-----------EEEEEcCCce
Confidence 7999998764221111 12333 235566789999999773 4677876544
|
| >d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Hemopexin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=89.18 E-value=6.9 Score=34.51 Aligned_cols=100 Identities=17% Similarity=0.333 Sum_probs=55.4
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcE---EEecc--CCCCCCCceeEEEEE------CCEEEEEeeeecCC
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQW---EQLNL--KGCPSPRSGHRMVLY------KHKIIVFGGFYDTL 202 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W---~~~~~--~g~P~~Rs~h~~~~~------~~~lyvfGG~~~~~ 202 (643)
++++|+|-| +.+|+|+..+... ..+.. .++| ..-.++..+ ++++|+|-|
T Consensus 59 ~~~~yfFkG-------------~~yw~y~~~~~~~gyPk~i~~~~~glp--~~iDAA~~~~~~~~~~~~~yfFkg----- 118 (192)
T d1qhua1 59 HTSVYLIKG-------------DKVWVYTSEKNEKVYPKSLQDEFPGIP--FPLDAAVECHRGECQDEGILFFQG----- 118 (192)
T ss_dssp TTEEEEEET-------------TEEEEECC-------CEEHHHHSTTCC--SSCCEEEEECBBTBSSSEEEEEET-----
T ss_pred CCcEEEEeC-------------CEEEEEeCCccccCCCcChHHhCCCCC--CCceEEEEccccccCCCeEEEEeC-----
Confidence 579999988 4578887543332 12211 1122 222234433 689999977
Q ss_pred CceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCC
Q 006473 203 REVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (643)
Q Consensus 203 ~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (643)
+..|+||..+.. .+.....+ .+... +++..++.+|+|-|. ..|+||..+.
T Consensus 119 ------~~yw~yd~~~~~--~~~~~w~g---ip~~d-aA~~~~g~~YfFkg~------------------~y~r~~~~~~ 168 (192)
T d1qhua1 119 ------NRKWFWDLTTGT--KKERSWPA---VGNCT-SALRWLGRYYCFQGN------------------QFLRFNPVSG 168 (192)
T ss_dssp ------TEEEEEETTTTE--EEEECCTT---SCCCS-EEEEETTEEEEEETT------------------EEEEECTTTC
T ss_pred ------CeEEEEeCCCCC--cccccccC---cCCcc-eeEEeCCcEEEEECC------------------EEEEEcCCcc
Confidence 357899987763 11111111 12222 444568999999663 3788887775
Q ss_pred e
Q 006473 283 E 283 (643)
Q Consensus 283 ~ 283 (643)
+
T Consensus 169 ~ 169 (192)
T d1qhua1 169 E 169 (192)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Gelatinase A (MMP-2), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.52 E-value=3.8 Score=36.59 Aligned_cols=63 Identities=17% Similarity=0.404 Sum_probs=37.3
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcE---EEeccCCCCCCCcee-EEEEE--CCEEEEEeeeecCCCceee
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQW---EQLNLKGCPSPRSGH-RMVLY--KHKIIVFGGFYDTLREVRY 207 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W---~~~~~~g~P~~Rs~h-~~~~~--~~~lyvfGG~~~~~~~~~~ 207 (643)
++.+|+|-| +.+|+|+-.+... ..+...++|..-.+- ++..+ ++++|+|-|
T Consensus 69 ~~~~yffkg-------------~~~~~y~~~~~~~gyPk~i~~~g~p~~~~~iDAA~~~~~~g~~YfFkg---------- 125 (200)
T d1gena_ 69 EEKAVFFAG-------------NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG---------- 125 (200)
T ss_dssp TTEEEEEET-------------TEEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET----------
T ss_pred CCeEEEecC-------------ceEEEEcCcccccCCCceehhcCCCCCccceeeEEEECCCCeEEEEeC----------
Confidence 678999987 4578887533211 222222334332332 33333 579999987
Q ss_pred eccEEEEEcCCCc
Q 006473 208 YNDLYVFDLDQFK 220 (643)
Q Consensus 208 ~~dv~~yD~~t~~ 220 (643)
+..|+||..+.+
T Consensus 126 -~~y~ryd~~~~~ 137 (200)
T d1gena_ 126 -DKFWRYNEVKKK 137 (200)
T ss_dssp -TEEEEEETTTTE
T ss_pred -cEEEEeccccce
Confidence 357899987654
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.02 E-value=9.4 Score=34.68 Aligned_cols=94 Identities=14% Similarity=0.092 Sum_probs=49.5
Q ss_pred ccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEec
Q 006473 209 NDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (643)
Q Consensus 209 ~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~ 288 (643)
..+..||..+.+....... .............+..++.|+.++. +.+|+..+......-
T Consensus 181 ~~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~d~~----------------i~i~d~~~~~~~~~~ 239 (355)
T d1nexb2 181 NTLIVWDVAQMKCLYILSG-----HTDRIYSTIYDHERKRCISASMDTT----------------IRIWDLENGELMYTL 239 (355)
T ss_dssp SCEEEEETTTTEEEEEECC-----CSSCEEEEEEETTTTEEEEEETTSC----------------EEEEETTTCCEEEEE
T ss_pred ceeeeeecccccceeeeec-----cccccccccccccceeeecccccce----------------EEeeecccccccccc
Confidence 3577888877654433322 1122222222225556666666544 677887766543332
Q ss_pred cCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 289 KIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 289 ~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
.. . . ....++...+..++.|+.+ ..|.+||+.+..
T Consensus 240 ~~-h-~---~~v~~~~~~~~~l~~~~~d--------------g~i~iwd~~~~~ 274 (355)
T d1nexb2 240 QG-H-T---ALVGLLRLSDKFLVSAAAD--------------GSIRGWDANDYS 274 (355)
T ss_dssp CC-C-S---SCCCEEEECSSEEEEECTT--------------SEEEEEETTTCC
T ss_pred cc-c-c---ccccccccccceeeeeecc--------------cccccccccccc
Confidence 21 1 1 1123344566777777753 348888987654
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=87.19 E-value=9.7 Score=33.94 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=39.5
Q ss_pred cEEEEECCCCcEEEecCCCCCCCceeeEEEEE---CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEecc
Q 006473 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL 173 (643)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~---~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~ 173 (643)
+||++|+....-++|+... ... ....+ +.+|+........ ....++|+++..+....++..
T Consensus 22 dl~~~d~~~g~~~~Lt~~~----~~~-~~p~~SPDG~~iaf~~~~~~~------~~~~~i~~~~~~~g~~~~lt~ 85 (281)
T d1k32a2 22 DLWEHDLKSGSTRKIVSNL----GVI-NNARFFPDGRKIAIRVMRGSS------LNTADLYFYNGENGEIKRITY 85 (281)
T ss_dssp EEEEEETTTCCEEEEECSS----SEE-EEEEECTTSSEEEEEEEESTT------CCEEEEEEEETTTTEEEECCC
T ss_pred cEEEEECCCCCEEEEecCC----Ccc-cCEEECCCCCEEEEEEeeCCC------CCceEEEEEEecCCceEEeee
Confidence 7999999999999887642 111 12223 4455544332221 123579999999999988865
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=87.03 E-value=3 Score=43.59 Aligned_cols=127 Identities=13% Similarity=0.084 Sum_probs=71.6
Q ss_pred EEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc--eEEeccCCCCC---CCCCccceeEEEeCCEEEEEcCCCCCCCC
Q 006473 186 VLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSM---WPSPRSGFQFFVYQDEVFLYGGYSKEVST 260 (643)
Q Consensus 186 ~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~---~P~~R~~~s~~~~~~~iyv~GG~~~~~~~ 260 (643)
+++++.||+... .+.|+++|..+.+ |+.-...+... ..........+++++.+|+... +.
T Consensus 74 iv~~g~vyv~t~----------~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~-~g---- 138 (573)
T d1kb0a2 74 VVVDGIMYVSAS----------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-DG---- 138 (573)
T ss_dssp EEETTEEEEECG----------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-TS----
T ss_pred EEECCEEEEECC----------CCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEec-cc----
Confidence 677999998643 3578999998865 87543221100 0111122245566787776532 22
Q ss_pred ccCCCCCCceeeeEEEEeCCCC--eeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEEC
Q 006473 261 DKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQL 338 (643)
Q Consensus 261 ~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~ 338 (643)
.++++|..+. .|......+.........+-+++++.+||-+.... ..+...|.+||.
T Consensus 139 ------------~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~---------~~~~G~v~a~D~ 197 (573)
T d1kb0a2 139 ------------RLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAE---------YGVRGYITAYDA 197 (573)
T ss_dssp ------------EEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTT---------TCCBCEEEEEET
T ss_pred ------------ceeeeccccccceecccCccCCcceEEeecceEEEeccEEEeecccc---------ccccceEEEEec
Confidence 3788987665 57765322111111222334667888776433222 223467999999
Q ss_pred CCCc--EEEeEe
Q 006473 339 DNHR--WYPLEL 348 (643)
Q Consensus 339 ~t~~--W~~l~~ 348 (643)
.|.+ |..-..
T Consensus 198 ~TG~~~W~~~t~ 209 (573)
T d1kb0a2 198 ETGERKWRWFSV 209 (573)
T ss_dssp TTCCEEEEEESS
T ss_pred CCccceeeeeec
Confidence 9974 766444
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=85.27 E-value=13 Score=33.60 Aligned_cols=107 Identities=13% Similarity=0.047 Sum_probs=53.5
Q ss_pred ccEEEEECCCCcEE-EecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCC
Q 006473 101 GDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP 177 (643)
Q Consensus 101 ndv~~yd~~~~~W~-~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P 177 (643)
+.|++||..+.+-. .++.+. ....-+.++.- +..||+.|+. ...+..||+.+++.........+
T Consensus 11 ~~v~v~D~~s~~~~~~i~~~~--~~~~~~~i~~spDg~~l~v~~~~-----------~~~v~v~D~~t~~~~~~~~~~~~ 77 (337)
T d1pbyb_ 11 DKLVVIDTEKMAVDKVITIAD--AGPTPMVPMVAPGGRIAYATVNK-----------SESLVKIDLVTGETLGRIDLSTP 77 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTT--CTTCCCCEEECTTSSEEEEEETT-----------TTEEEEEETTTCCEEEEEECCBT
T ss_pred CEEEEEECCCCeEEEEEECCC--CCCCccEEEECCCCCEEEEEECC-----------CCeEEEEECCCCcEEEEEecCCC
Confidence 68899999987643 343221 11222223332 4578888754 24689999999876543221111
Q ss_pred C--CCceeEEEEE--CCEEEEEeeeecCCC--ceeeeccEEEEEcCCCc
Q 006473 178 S--PRSGHRMVLY--KHKIIVFGGFYDTLR--EVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 178 ~--~Rs~h~~~~~--~~~lyvfGG~~~~~~--~~~~~~dv~~yD~~t~~ 220 (643)
. ....+.+++. ++++|+.+....... .......+..+|..+..
T Consensus 78 ~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 126 (337)
T d1pbyb_ 78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS 126 (337)
T ss_dssp TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE
T ss_pred cccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCe
Confidence 1 1111223332 445655543221110 01123467778887765
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=83.81 E-value=21 Score=34.84 Aligned_cols=188 Identities=15% Similarity=0.121 Sum_probs=94.7
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (643)
+.+..+|..+++-...-. ....-|.++.- +..||+.+ .. ..+.++|+.+..-..+.. .+.
T Consensus 42 g~v~v~D~~t~~v~~~~~----~g~~~~~v~fSpDG~~l~~~s-~d-----------g~v~~~d~~t~~~~~~~~--i~~ 103 (432)
T d1qksa2 42 GQIALIDGSTYEIKTVLD----TGYAVHISRLSASGRYLFVIG-RD-----------GKVNMIDLWMKEPTTVAE--IKI 103 (432)
T ss_dssp TEEEEEETTTCCEEEEEE----CSSCEEEEEECTTSCEEEEEE-TT-----------SEEEEEETTSSSCCEEEE--EEC
T ss_pred CEEEEEECCCCcEEEEEe----CCCCeeEEEECCCCCEEEEEc-CC-----------CCEEEEEeeCCCceEEEE--Eec
Confidence 478889999887653321 22233444443 45676653 21 457889988776443322 122
Q ss_pred CCceeEEEEE-------CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCC------CCCCCCccceeEEEe-
Q 006473 179 PRSGHRMVLY-------KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG------SMWPSPRSGFQFFVY- 244 (643)
Q Consensus 179 ~Rs~h~~~~~-------~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~------~~~P~~R~~~s~~~~- 244 (643)
. .+|...++ +.+||+.+.. .+.+.+||..+.+-........ ...+.+|....++..
T Consensus 104 ~-~~~~~~~~s~~~SpDG~~l~vs~~~---------~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d 173 (432)
T d1qksa2 104 G-SEARSIETSKMEGWEDKYAIAGAYW---------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHY 173 (432)
T ss_dssp C-SEEEEEEECCSTTCTTTEEEEEEEE---------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSS
T ss_pred C-CCCCCeEEecccCCCCCEEEEEcCC---------CCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCC
Confidence 2 23333333 3467776553 3568889998887655433211 011233332222222
Q ss_pred CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCcc
Q 006473 245 QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGD 323 (643)
Q Consensus 245 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~ 323 (643)
+..+++-.... ..++.++..+..-.++... +....-+.+++. +++.++++...
T Consensus 174 g~~~~vs~~~~----------------~~i~~~d~~~~~~~~~~~i---~~g~~~~~~~~spdg~~~~va~~~------- 227 (432)
T d1qksa2 174 RPEFIVNVKET----------------GKILLVDYTDLNNLKTTEI---SAERFLHDGGLDGSHRYFITAANA------- 227 (432)
T ss_dssp SSEEEEEETTT----------------TEEEEEETTCSSEEEEEEE---ECCSSEEEEEECTTSCEEEEEEGG-------
T ss_pred CCEEEEEEccC----------------CeEEEEEccCCCcceEEEE---cccCccccceECCCCCEEEEeccc-------
Confidence 33444433322 2367777665443333221 223333455555 44444443322
Q ss_pred ccccccCCcEEEEECCCCcEEEeEe
Q 006473 324 VIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 324 ~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
.+.+.+++..+.+......
T Consensus 228 ------~~~v~v~d~~~~~~~~~~~ 246 (432)
T d1qksa2 228 ------RNKLVVIDTKEGKLVAIED 246 (432)
T ss_dssp ------GTEEEEEETTTTEEEEEEE
T ss_pred ------cceEEEeecccceEEEEec
Confidence 3568888888776655444
|
| >d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Gelatinase A (MMP-2), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.78 E-value=2.8 Score=37.45 Aligned_cols=103 Identities=20% Similarity=0.414 Sum_probs=56.3
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcE---EEecCCCCCCCceeeEEE-EE--CCEEEEEeCccCCCCCCccee
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW---KVISSPNSPPPRSAHQAV-SW--KNYLYIFGGEFTSPNQERFHH 154 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W---~~l~s~~~P~pRs~ha~~-~~--~~~iyvfGG~~~~~~~~~~~~ 154 (643)
++++|+|-| +.+|+|+-.+-.. +.+.....|..-.+--++ .. ++++|+|-|
T Consensus 69 ~~~~yffkg-----------~~~~~y~~~~~~~gyPk~i~~~g~p~~~~~iDAA~~~~~~g~~YfFkg------------ 125 (200)
T d1gena_ 69 EEKAVFFAG-----------NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG------------ 125 (200)
T ss_dssp TTEEEEEET-----------TEEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET------------
T ss_pred CCeEEEecC-----------ceEEEEcCcccccCCCceehhcCCCCCccceeeEEEECCCCeEEEEeC------------
Confidence 578999888 3578887432111 122221223222222233 32 689999988
Q ss_pred cCeEEEEECCCCcEE-----Eecc--CCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 155 YKDFWMLDLKTNQWE-----QLNL--KGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 155 ~~dv~~yD~~t~~W~-----~~~~--~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
+..|+||..++.-. .+.. .++|. .-.++..+ ++++|+|-| +..|+||..+.+
T Consensus 126 -~~y~ryd~~~~~vd~~yPk~I~~~w~gvp~--~idAAf~~~~~g~~Yff~g-----------~~y~r~d~~~~~ 186 (200)
T d1gena_ 126 -DKFWRYNEVKKKMDPGFPKLIADAWNAIPD--NLDAVVDLQGGGHSYFFKG-----------AYYLKLENQSLK 186 (200)
T ss_dssp -TEEEEEETTTTEECSSCCEEHHHHSSSCCS--SCSEEEECTTTCEEEEEET-----------TEEEEEETTEEE
T ss_pred -cEEEEeccccceeccCcceehhhccCCCCC--CccEEEEecCCCEEEEEEC-----------CEEEEEECCceE
Confidence 46899999876521 1111 12232 22344444 588999977 345777765443
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.25 E-value=15 Score=32.83 Aligned_cols=112 Identities=10% Similarity=0.096 Sum_probs=60.8
Q ss_pred EEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCC
Q 006473 185 MVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQ 264 (643)
Q Consensus 185 ~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~ 264 (643)
+...++..++.|+.+ ..+.+||+...+-...... ....-.++ ...+.+++.|+.++.
T Consensus 182 ~~~~~~~~l~s~~~d---------g~i~~~d~~~~~~~~~~~~------~~~~v~~~-~~~~~~l~s~s~d~~------- 238 (342)
T d2ovrb2 182 SLQFDGIHVVSGSLD---------TSIRVWDVETGNCIHTLTG------HQSLTSGM-ELKDNILVSGNADST------- 238 (342)
T ss_dssp EEEECSSEEEEEETT---------SCEEEEETTTCCEEEEECC------CCSCEEEE-EEETTEEEEEETTSC-------
T ss_pred cccCCCCEEEEEeCC---------CeEEEeecccceeeeEecc------cccceeEE-ecCCCEEEEEcCCCE-------
Confidence 344466666667643 3578888877653322211 11111222 234456677776654
Q ss_pred CCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEE
Q 006473 265 SEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (643)
Q Consensus 265 ~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (643)
+.+||....+-...-.. .........+...++.+++.||.+ ..|.+||+.+++..
T Consensus 239 ---------i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~s~D--------------g~i~iwd~~tg~~i 293 (342)
T d2ovrb2 239 ---------VKIWDIKTGQCLQTLQG--PNKHQSAVTCLQFNKNFVITSSDD--------------GTVKLWDLKTGEFI 293 (342)
T ss_dssp ---------EEEEETTTCCEEEEECS--TTSCSSCEEEEEECSSEEEEEETT--------------SEEEEEETTTCCEE
T ss_pred ---------EEEEecccccccccccc--cceeeeceeecccCCCeeEEEcCC--------------CEEEEEECCCCCEE
Confidence 77888776554333221 111222333444567777777753 34899999987653
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.59 E-value=15 Score=32.09 Aligned_cols=68 Identities=15% Similarity=0.181 Sum_probs=40.7
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~ 160 (643)
++.+++.|+. + +.|.+||+.+.+-...-... ...-.++.+++.+++.||.. ..+..
T Consensus 24 d~~~l~sgs~--D-------g~i~vWd~~~~~~~~~l~~H----~~~V~~v~~~~~~l~s~s~D-----------~~i~~ 79 (293)
T d1p22a2 24 DDQKIVSGLR--D-------NTIKIWDKNTLECKRILTGH----TGSVLCLQYDERVIITGSSD-----------STVRV 79 (293)
T ss_dssp CSSEEEEEES--S-------SCEEEEESSSCCEEEEECCC----SSCEEEEECCSSEEEEEETT-----------SCEEE
T ss_pred cCCEEEEEeC--C-------CeEEEEECCCCcEEEEEecC----CCCEeeeecccceeeccccc-----------ccccc
Confidence 5777888883 2 35778898877654332211 11122344567777777753 34778
Q ss_pred EECCCCcEEEec
Q 006473 161 LDLKTNQWEQLN 172 (643)
Q Consensus 161 yD~~t~~W~~~~ 172 (643)
+++.++......
T Consensus 80 ~~~~~~~~~~~~ 91 (293)
T d1p22a2 80 WDVNTGEMLNTL 91 (293)
T ss_dssp EESSSCCEEEEE
T ss_pred cccccccccccc
Confidence 888877765544
|
| >d1hxna_ b.66.1.1 (A:) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Hemopexin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=81.21 E-value=5 Score=36.07 Aligned_cols=102 Identities=20% Similarity=0.478 Sum_probs=53.5
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEE--EecC--CCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecC
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK--VISS--PNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYK 156 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~--~l~s--~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~ 156 (643)
++++|+|-|. .+|+++.....|. .|.. +.+|. .--++...++++|+|-| +
T Consensus 19 ~G~~y~Fkg~-----------~~wr~~~~~~~~~p~~I~~~W~~lp~--~IDAA~~~~~~~yfFkG-------------~ 72 (210)
T d1hxna_ 19 HGATYVFSGS-----------HYWRLDTNRDGWHSWPIAHQWPQGPS--TVDAAFSWEDKLYLIQD-------------T 72 (210)
T ss_dssp TSCEEEEETT-----------EEEESSSSSCTTCCEEGGGTCTTSCS--SCSEEEEETTEEEEEET-------------T
T ss_pred CCCEEEEECC-----------EEEEEcCCCCCCCcccHHHhcCCCCc--ccceEEEeCCeEEEEec-------------C
Confidence 6899999883 3455554444332 1211 11222 22334456889999987 4
Q ss_pred eEEEEECCCC-cE-----EEec-cCCCCCC-C-cee-EEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCC
Q 006473 157 DFWMLDLKTN-QW-----EQLN-LKGCPSP-R-SGH-RMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (643)
Q Consensus 157 dv~~yD~~t~-~W-----~~~~-~~g~P~~-R-s~h-~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~ 219 (643)
.+|+|...+. .- ..+. ..+.|.. . .+- ++..+ ++++|+|-| +..|+||..+.
T Consensus 73 ~y~~y~~~~~~~~~~GyPk~i~~~~g~p~~~~~~~IDAA~~~~~~gk~yffkG-----------~~y~ryd~~~~ 136 (210)
T d1hxna_ 73 KVYVFLTKGGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAG-----------RRLWWLDLKSG 136 (210)
T ss_dssp EEEEEECSSSCEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEET-----------TEEEEEEGGGG
T ss_pred EEEEEEcCCCcCccCCCCcChhhccCCCCCCCCCcEeEEEEeCCCCEEEEEEC-----------CEEEEEcCCcC
Confidence 5788865321 11 1111 1112211 1 122 33333 579999977 35789998653
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=81.11 E-value=23 Score=34.56 Aligned_cols=167 Identities=11% Similarity=0.038 Sum_probs=81.4
Q ss_pred CCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEE---EecCCCCCCCceeeEEEEE------CCEEE
Q 006473 68 PRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK---VISSPNSPPPRSAHQAVSW------KNYLY 138 (643)
Q Consensus 68 ~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~---~l~s~~~P~pRs~ha~~~~------~~~iy 138 (643)
...-|.+++.| +++.+.+++. -+.+.+||+.+.+-. .+... ...+.++.. +..||
T Consensus 61 g~~~~~v~fSp--DG~~l~~~s~---------dg~v~~~d~~t~~~~~~~~i~~~-----~~~~~~~~s~~~SpDG~~l~ 124 (432)
T d1qksa2 61 GYAVHISRLSA--SGRYLFVIGR---------DGKVNMIDLWMKEPTTVAEIKIG-----SEARSIETSKMEGWEDKYAI 124 (432)
T ss_dssp SSCEEEEEECT--TSCEEEEEET---------TSEEEEEETTSSSCCEEEEEECC-----SEEEEEEECCSTTCTTTEEE
T ss_pred CCCeeEEEECC--CCCEEEEEcC---------CCCEEEEEeeCCCceEEEEEecC-----CCCCCeEEecccCCCCCEEE
Confidence 33456666776 4444434442 135778888766433 33221 112222211 34677
Q ss_pred EEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCC---------CCCCceeEEEEE-CCEEEEEeeeecCCCceeee
Q 006473 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC---------PSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYY 208 (643)
Q Consensus 139 vfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~---------P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~ 208 (643)
+.+.. -..+.+||..+.+-........ +.+|....++.. +..+|+-... .
T Consensus 125 vs~~~-----------~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~---------~ 184 (432)
T d1qksa2 125 AGAYW-----------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE---------T 184 (432)
T ss_dssp EEEEE-----------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT---------T
T ss_pred EEcCC-----------CCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc---------C
Confidence 76543 2568899999887655432110 222221111111 2344433221 3
Q ss_pred ccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CC-EEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEE
Q 006473 209 NDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QD-EVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (643)
Q Consensus 209 ~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (643)
+.++.+|..+..-..+... +....-+.++.. ++ .+|+..... +.+...+..+.....
T Consensus 185 ~~i~~~d~~~~~~~~~~~i-----~~g~~~~~~~~spdg~~~~va~~~~----------------~~v~v~d~~~~~~~~ 243 (432)
T d1qksa2 185 GKILLVDYTDLNNLKTTEI-----SAERFLHDGGLDGSHRYFITAANAR----------------NKLVVIDTKEGKLVA 243 (432)
T ss_dssp TEEEEEETTCSSEEEEEEE-----ECCSSEEEEEECTTSCEEEEEEGGG----------------TEEEEEETTTTEEEE
T ss_pred CeEEEEEccCCCcceEEEE-----cccCccccceECCCCCEEEEecccc----------------ceEEEeecccceEEE
Confidence 5678888776554444433 233333444444 33 445544332 236777877776655
Q ss_pred eccCC
Q 006473 287 VKKIG 291 (643)
Q Consensus 287 l~~~g 291 (643)
....+
T Consensus 244 ~~~~g 248 (432)
T d1qksa2 244 IEDTG 248 (432)
T ss_dssp EEECS
T ss_pred EeccC
Confidence 54433
|