Citrus Sinensis ID: 006474

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640---
METLVGAEGNGEGQFKESRIHKTNSTFSSPNLGADPVVYKLVRVDGDGKLVPATDDELMEVGNLLADDKIEMHLVADAGPTGRCIFNERSSSGMPKLESSEGLSNSENAEADAGKLNTHLESIEEMLTKAKQEESHLLACGSPDHSSTYVLVDGQCSDQHDTLRGIDEKLQSEIPLQESDLSSQSLSKSLNNQPSIHGECSNSSNGLVEGQRSTSAVYTSSKPEFSRLMGEICLDNLSIKELHETFKATFGRETTVKDKQWLKRRIAMGLTNSCDVSTSSFIIKDNKLVSKGGEGSCNKEAIEDQAVKPVDGSGKESSLNPGSKMEDQQIVSSERLRTCSKDYSCADEDPLKEQRNAKRIRKPTRRYIEELSEVESKEHGGKSIASVKNLGLGLMSSRSNTRPVRIASSNRITLRLDSLGGSGVQIPYVSRVRRSRPRKNVKALMEFHPNGIGMAAKLVKEAVDVHSSEPNRESGGIVLKASSAPEQIQQQGQNMEPKNKDPSVYTPDDNPATVRAVKGGVRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDSRMGARKHASSVPIPMPVLLRVRELAEMQSQFPPNLSSSKLTGSAGRNVNETRSGYL
cccEEccccccccccccccccccccccccccccccccEEEEEEEccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHcccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccc
ccEEEEEEcccccHHHHccEEcccccccccccccccEEEEEEEEcccccEccccHHHHHHHHHHHHccccccccccccccEEEEccccccccccccccccccccccccccccHHHHcccHHHHHHHHHHccHHccccccccccccccccEEEccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccEEcccccHHHHHHHHHHHccccccHHcHHHHHHHHHHcccccccccccEEEEEcccEEcccccccEcHHHccccccccccccccccccccccccccHEEcccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccEEccccccEEEEEcccccccEEccccccccccccccccccccccccccccccccccHccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHccccccccccccHHHHHHHHHHHHHccccHHHccccccccccccccHHHHHHHHHHHHHccccccccccccEccccccEEEccccccc
metlvgaegngegqfkesrihktnstfsspnlgadpvvYKLVRvdgdgklvpatddELMEVGNLLaddkiemhlvadagptgrcifnersssgmpklesseglsnsenaeadagKLNTHLESIEEMLTKAKQEEShllacgspdhsstyvlvdgqcsdqhdtlrgideklqseiplqesdlssqslskslnnqpsihgecsnssnglvegqrstsavytsskpefsrLMGEICLDNLSIKELHETFKatfgrettvkDKQWLKRRIAMGltnscdvstssfiikdnklvskggegscnkeaiedqavkpvdgsgkesslnpgskmedqqivsserlrtcskdyscadedplkeqrnakrirkPTRRYIEELSeveskehggksiASVKNLGlglmssrsntrpvriassnritlrldslggsgvqipyvsrvrrsrprKNVKALMEFHPNGIGMAAKLVKEAVDvhssepnresggivlkassapeqiqqqgqnmepknkdpsvytpddnpatvravkggvrrkhhraWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASlaqtppdsrmgarkhassvpipmpvLLRVRELAEmqsqfppnlssskltgsagrnvnetrsgyl
metlvgaegngegqfkesrihktnstfsspnlgadpVVYKLVRVDGDGKLVPATDDELMEVGNLLADDKIEMHLVADAGPTGRCIFNERSSSGMPKLESSEGLSNSENAEADAGKLNTHLESIEEMLTKAKQEESHLLACGSPDHSSTYVLVDGQCSDQHDTLRGIDEKLQSEIPLQESDLSSQSLSKSLNNQPSIHGECSNSSNGLVEGQRSTSAVYTSSKPEFSRLMGEICLDNLSIKELHEtfkatfgrettvkdkqWLKRRIAMgltnscdvstssfiikdnklvskggegscnkeaiedqavkpvdgsgkesslnpgskmedqqivsserlrtcskdyscadedplkeqrnakrirkptrRYIEElseveskehggksiaSVKNLGlglmssrsntrpvriassnritlrldslggsgvqipyvsrvrrsrprkNVKALMEFHPNGIGMAAKLVKEAVDVHSSEPNRESGGIVLKASSAPEQIQQQgqnmepknkdpsvytpddnpatvravkggvrrkhhrawtlsevmklVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASlaqtppdsrmgarkhassvpipMPVLLRVRELAEMQSQfppnlssskltgsagrnvnetrsgyl
METLVGAEGNGEGQFKESRIHKTNSTFSSPNLGADPVVYKLVRVDGDGKLVPATDDELMEVGNLLADDKIEMHLVADAGPTGRCIFNERSSSGMPKlesseglsnsenaeaDAGKLNTHLESIEEMLTKAKQEESHLLACGSPDHSSTYVLVDGQCSDQHDTLRGIDEKLQSEIPlqesdlssqslskslnnqpsIHGECSNSSNGLVEGQRSTSAVYTSSKPEFSRLMGEICLDNLSIKELHETFKATFGRETTVKDKQWLKRRIAMGLTNSCDVSTSSFIIKDNKLVSKGGEGSCNKEAIEDQAVKPVDGSGKESSLNPGSKMEDQQIVSSERLRTCSKDYSCADEDPLKEQRNAKRIRKPTRRYIEELSEVESKEHGGKSIASVKNLGLGLMSSRSNTRPVRIASSNRITLRLDSLGGSGVQIpyvsrvrrsrprKNVKALMEFHPNGIGMAAKLVKEAVDVHSSEPNRESGGIVLKASSAPEQIQQQGQNMEPKNKDPSVYTPDDNPATVRAVKGGVRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDSRMGARKHASSVPIPMPVLLRVRELAEMQSQFPPNLSSSKLTGSAGRNVNETRSGYL
*********************************ADPVVYKLVRVDGDGKLVPATDDELMEVGNLLADDKIEMHLVADAGPTGRCIF*************************************************************TYVLVDG***********************************************************************SRLMGEICLDNLSIKELHETFKATFGRETTVKDKQWLKRRIAMGLTNSCDVSTSSFIIKDNKL***************************************************************************************************************************ITLRLDSLGGSGVQIPYVSR***********ALMEFHPNGIGMAAKLV*********************************************************VKGGVRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK******************************************************************
**TL*G******************************VVYKLVRVDGDGKLVPATDDELMEVGNLLADDKIEMHLVADAGPTGRCIFNERSSSGMPKLES***LS************N*************************PDHSSTYVLVDGQCSD**********************************************************************MGEICLDNLSIKELHETFKATFGRETTVKDKQWLKRRIAMGLTNSCDVSTSSFIIK****************************************************************************************************************************************************************************************************************************************************WTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLL****************************LLRVR**********************************
*************QFKESRIHKTNSTFSSPNLGADPVVYKLVRVDGDGKLVPATDDELMEVGNLLADDKIEMHLVADAGPTGRCIFNERS*******************EADAGKLNTHLESIEEMLTKAKQEESHLLACGSPDHSSTYVLVDGQCSDQHDTLRGIDEKLQSEIP********************************************SSKPEFSRLMGEICLDNLSIKELHETFKATFGRETTVKDKQWLKRRIAMGLTNSCDVSTSSFIIKDNKLVSKGGEGSCNKEAIEDQAVKP*************************RLRTCSKDYSCADEDPLKEQRNAKRIRKPTRRYIEEL**********KSIASVKNLGLGLMSSRSNTRPVRIASSNRITLRLDSLGGSGVQIPYVSRVRRSRPRKNVKALMEFHPNGIGMAAKLVKEA***********SGGIVLKASSAP******************VYTPDDNPATVRAV********HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQT*************SVPIPMPVLLRVRELAEMQSQFPPNLSSSKLTGSAGRNVNETRSGYL
*ETLVGAEGNGEGQFKESRIHKT*STFSSPNLGADPVVYKLVRVDGDGKLVPATDDELMEVGNLLADDKIEMHLVADAGPTGRCIFNERSSSGMPKLESSEGLSNSENAEADAGKLNTHLESIEEMLTKAKQEESHLLACGSPDHSSTYVLVDGQCSDQ***LR*IDEKLQSEIPLQES*L*****************************************PEFSRLMGEICLDNLSIKELHETFKATFGRETTVKDKQWLKRRIAMGLTNSCDVSTSSFIIKDNKLVSKGGEG**N************************************************************RIRKPTRR*IEELS*****************************RPVRIASSNRITLRLDSLGGSGVQIPYVSRV***********************************************************************************************AWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLA****************VPIPMPVLLRVRELAEMQS***************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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METLVGAEGNGEGQFKESRIHKTNSTFSSPNLGADPVVYKLVRVDGDGKLVPATDDELMEVGNLLADDKIEMHLVADAGPTGRCIFNERSSSGMPKLESSEGLSNSENAEADxxxxxxxxxxxxxxxxxxxxxESHLLACGSPDHSSTYVLVDGQCSDQHDTLRGIDEKLQSEIPLQESDLSSQSLSKSLNNQPSIHGECSNSSNGLVEGQRSTSAVYTSSKPEFSRLMGEICLDNLSIKELHETFKATFGRETTVKDKQWLKRRIAMGLTNSCDVSTSSFIIKDNKLVSKGGEGSCNKEAIEDQAVKPVDGSGKESSLNPGSKMEDQQIVSSERLRTCSKDYSCADEDPLKEQRNAKRIRKPTRRYIEELSEVESKEHGGKSIASVKNLGLGLMSSRSNTRPVRIASSNRITLRLDSLGGSGVQIPYVSRVRRSRPRKNVKALMEFHPNGIGMAAKLVKEAVDVHSSEPNRESGGIVLKASSAPEQIQQQGQNMEPKNKDPSVYTPDDNPATVRAVKGGVRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDSRMGARKHASSVPIPMPVLLRVRELAEMQSQFPPNLSSSKLTGSAGRNVNETRSGYL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query643 2.2.26 [Sep-21-2011]
Q9LL45633 Telomere-binding protein no no 0.119 0.121 0.431 6e-10
Q9SNB9553 Telomere repeat-binding p no no 0.138 0.160 0.367 3e-09
Q9M347400 Telomere repeat-binding p no no 0.122 0.197 0.386 3e-09
Q6R0E3630 Telomere repeat-binding p no no 0.122 0.125 0.375 6e-09
Q9FFY9640 Telomere repeat-binding p no no 0.121 0.121 0.379 9e-09
Q9C7B1619 Telomere repeat-binding p no no 0.135 0.140 0.364 1e-08
Q8L7L8578 Telomere repeat-binding p no no 0.110 0.122 0.4 2e-08
P54274439 Telomeric repeat-binding yes no 0.088 0.129 0.440 7e-05
O55036438 Telomeric repeat-binding no no 0.088 0.130 0.440 8e-05
F4I7L1 296 Telomere repeat-binding f no no 0.071 0.155 0.5 0.0002
>sp|Q9LL45|TBP1_ORYSJ Telomere-binding protein 1 OS=Oryza sativa subsp. japonica GN=TBP1 PE=1 SV=2 Back     alignment and function desciption
 Score = 66.6 bits (161), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 11/88 (12%)

Query: 522 RRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK-ASL 580
           +R+  R +T++EV  LVE V   G GRW ++K  AF +  +RT VDLKDKW+ L+  AS+
Sbjct: 530 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASI 589

Query: 581 AQTPPDSRMGARKHASSVPIPMPVLLRV 608
           A   P  R GA       P+P  +L RV
Sbjct: 590 A---PQQRRGA-------PVPQELLDRV 607
Binds the telomeric double-stranded 5'TTTAGGG-3' repeat and regulates telomere length and structure.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q9SNB9|TRP2_ARATH Telomere repeat-binding protein 2 OS=Arabidopsis thaliana GN=TRP2 PE=1 SV=1 Back     alignment and function description
>sp|Q9M347|TRP6_ARATH Telomere repeat-binding protein 6 OS=Arabidopsis thaliana GN=TRP6 PE=1 SV=1 Back     alignment and function description
>sp|Q6R0E3|TRP5_ARATH Telomere repeat-binding protein 5 OS=Arabidopsis thaliana GN=TRP5 PE=1 SV=2 Back     alignment and function description
>sp|Q9FFY9|TRP4_ARATH Telomere repeat-binding protein 4 OS=Arabidopsis thaliana GN=TRP4 PE=1 SV=1 Back     alignment and function description
>sp|Q9C7B1|TRP3_ARATH Telomere repeat-binding protein 3 OS=Arabidopsis thaliana GN=TRP3 PE=1 SV=1 Back     alignment and function description
>sp|Q8L7L8|TRP1_ARATH Telomere repeat-binding protein 1 OS=Arabidopsis thaliana GN=TRP1 PE=1 SV=2 Back     alignment and function description
>sp|P54274|TERF1_HUMAN Telomeric repeat-binding factor 1 OS=Homo sapiens GN=TERF1 PE=1 SV=3 Back     alignment and function description
>sp|O55036|TERF1_CRIGR Telomeric repeat-binding factor 1 (Fragment) OS=Cricetulus griseus GN=TERF1 PE=2 SV=1 Back     alignment and function description
>sp|F4I7L1|TRB4_ARATH Telomere repeat-binding factor 4 OS=Arabidopsis thaliana GN=At1g17520 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query643
225442160667 PREDICTED: uncharacterized protein LOC10 0.998 0.962 0.570 0.0
297743022686 unnamed protein product [Vitis vinifera] 0.998 0.935 0.554 0.0
224054116661 predicted protein [Populus trichocarpa] 0.993 0.966 0.586 0.0
255560653623 conserved hypothetical protein [Ricinus 0.939 0.969 0.578 0.0
356558735646 PREDICTED: uncharacterized protein LOC10 0.967 0.962 0.527 1e-162
147805280 867 hypothetical protein VITISV_005454 [Viti 0.841 0.623 0.544 1e-160
358248240648 uncharacterized protein LOC100775511 [Gl 0.965 0.958 0.529 1e-160
357513925662 Myb family transcription factor [Medicag 0.976 0.948 0.494 1e-158
224070821704 predicted protein [Populus trichocarpa] 0.990 0.904 0.502 1e-158
357513929663 Myb family transcription factor [Medicag 0.978 0.948 0.493 1e-157
>gi|225442160|ref|XP_002274215.1| PREDICTED: uncharacterized protein LOC100263481 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/668 (57%), Positives = 461/668 (69%), Gaps = 26/668 (3%)

Query: 1   METLVGAEGNGEGQFKESRIHKTNSTFSSPNLGADPVVYKLVRVDGDGKLVPATDDELME 60
           MET+VG EGN E +F++  + K+    +     ADPVVYKLVRVDGDG+LVPATDDE+ME
Sbjct: 1   METVVGVEGNDEAKFEDCVVEKSGPEPTQSKQIADPVVYKLVRVDGDGRLVPATDDEVME 60

Query: 61  VGNLLADDKIEMHLVADAGPTGRCIFNERSSSGMPKLESSEGLSNSENAEADAGKLNTHL 120
           V +LL + KIEM  VAD G T  C   E   SG P LE SEG+  S N E DA KL+  L
Sbjct: 61  VEDLLEEFKIEMPFVADTGQTVECTSKEEFPSGNPHLECSEGMLQSVNTEIDAEKLSARL 120

Query: 121 ESIEEMLTKAKQEESHLLACGSPDHSSTYVLVDGQCSDQHDTLRGIDEKLQSEIPLQESD 180
           E I EML K  QEE   LA GSPDHSS Y+ VD Q SD+HD L  ID+KLQS+IPLQE  
Sbjct: 121 EYIGEMLQKVNQEERLRLAYGSPDHSSAYMNVDSQYSDEHDKLPAIDKKLQSKIPLQEIV 180

Query: 181 LSSQSLSKSLN-NQPSIHGECSNSSNGLVEGQRSTSAVYTSSKPEFSRLMGEICLDNLSI 239
            SS   S   + +Q    GECSN   G ++   S SAV TS KP+F++L GEICLDNLSI
Sbjct: 181 PSSVLSSNDTHIDQSGSVGECSNPPGGPMDSGSSASAVCTSLKPDFTKLKGEICLDNLSI 240

Query: 240 KELHETFKATFGRETTVKDKQWLKRRIAMGLTNSCDVSTSSFIIKDNKLVSKGGEGSC-- 297
           +ELHETFKATFGRET+VKDKQWLKRRIAMGLTNSCDVST++FI KDNK + K  E  C  
Sbjct: 241 RELHETFKATFGRETSVKDKQWLKRRIAMGLTNSCDVSTTTFIFKDNKSMKKVKEECCKS 300

Query: 298 -NKEAIEDQAVKPVDGSGKESSLNPGSKMEDQQIVSSERLRTCSKDYSCADEDPLKEQRN 356
            +   IED  V   + + ++S  +  ++ E  QI+S +RLR  S +Y C  +D   EQ  
Sbjct: 301 VDGTLIEDTVVGAKNDNCRDSPTSRNNRGEAHQILSGKRLRNSSVEYDCGSDDLHTEQIA 360

Query: 357 AKRIRKPTRRYIEELSEVESKEHGGKSIASVKNLGLGLMSSRSNTRPVRIASS--NRITL 414
            KRIRKPT+RYIEELSE +S+E+GG+  +SVKN   G  S +S  RPVR   S    +  
Sbjct: 361 GKRIRKPTKRYIEELSEADSREYGGRLTSSVKNSVHGQSSPKSQARPVRNVCSEGKTVVT 420

Query: 415 RLDSLGGSGVQIPYVSRVRRSRPRKNVKALMEFHPNGIGMAAKLVKEAVDVHSSEPNRES 474
           RLDSLGGSGVQ+PYV RVRRSRPRKN  ALM+F+ N +GMAAKLVK+A+ V SS  + E 
Sbjct: 421 RLDSLGGSGVQVPYVFRVRRSRPRKNFMALMKFNTNSMGMAAKLVKKALGVRSSRTDNEG 480

Query: 475 GGIVLKASSAPEQIQ-------------------QQGQNMEPKNKDPSVYTPDDNPATVR 515
           G  VL++  AP+++Q                   +  Q +E K+ D S  T DDN ATV 
Sbjct: 481 GNKVLQSRPAPKRLQLPLIGEPVKHEQCSVADTIELEQRVELKHVDSSGDTSDDNIATVP 540

Query: 516 AVKGGVRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNL 575
             KGG+RRKHHRAWTLSEVMKLV+GVS+YGAGRWSEIKRLAFASYSYRTSVDLKDKWRNL
Sbjct: 541 TAKGGMRRKHHRAWTLSEVMKLVDGVSRYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNL 600

Query: 576 LKASLAQTPPDSRMGARKHASSVPIPMPVLLRVRELAEMQSQFPPNLSSSKLTGSAGRNV 635
           L+AS A +P +  M +RKH  S+PIP  +LL+VRELAEM +Q  PNL +SK +G  GR V
Sbjct: 601 LRASFALSPAEKGMSSRKHG-SMPIPAAILLKVRELAEMHAQVAPNLGTSKPSGCGGRTV 659

Query: 636 NETRSGYL 643
           +ETR+G+L
Sbjct: 660 HETRAGFL 667

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297743022|emb|CBI35889.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224054116|ref|XP_002298100.1| predicted protein [Populus trichocarpa] gi|222845358|gb|EEE82905.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255560653|ref|XP_002521340.1| conserved hypothetical protein [Ricinus communis] gi|223539418|gb|EEF41008.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356558735|ref|XP_003547658.1| PREDICTED: uncharacterized protein LOC100782501 [Glycine max] Back     alignment and taxonomy information
>gi|147805280|emb|CAN77858.1| hypothetical protein VITISV_005454 [Vitis vinifera] Back     alignment and taxonomy information
>gi|358248240|ref|NP_001240101.1| uncharacterized protein LOC100775511 [Glycine max] gi|254808770|gb|ACT82840.1| transcription factor MYB884 [Glycine max] Back     alignment and taxonomy information
>gi|357513925|ref|XP_003627251.1| Myb family transcription factor [Medicago truncatula] gi|355521273|gb|AET01727.1| Myb family transcription factor [Medicago truncatula] Back     alignment and taxonomy information
>gi|224070821|ref|XP_002303250.1| predicted protein [Populus trichocarpa] gi|222840682|gb|EEE78229.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357513929|ref|XP_003627253.1| Myb family transcription factor [Medicago truncatula] gi|355521275|gb|AET01729.1| Myb family transcription factor [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query643
TAIR|locus:2030255630 TRFL6 "TRF-like 6" [Arabidopsi 0.914 0.933 0.370 3.6e-82
TAIR|locus:504955960410 TRFL8 "TRF-like 8" [Arabidopsi 0.206 0.324 0.384 2.6e-16
UNIPROTKB|Q9LL45633 TBP1 "Telomere-binding protein 0.119 0.121 0.431 2.9e-07
TAIR|locus:2148383578 TRP1 "AT5G59430" [Arabidopsis 0.121 0.134 0.390 5.3e-07
TAIR|locus:2075145553 TRFL1 "TRF-like 1" [Arabidopsi 0.135 0.157 0.375 8.2e-07
UNIPROTKB|F1RWI3439 TERF1 "Uncharacterized protein 0.136 0.200 0.336 1.4e-06
TAIR|locus:2101232619 TRFL9 "TRF-like 9" [Arabidopsi 0.121 0.126 0.379 2.7e-06
TAIR|locus:2159048640 TBP1 "AT5G13820" [Arabidopsis 0.121 0.121 0.379 3.8e-06
TAIR|locus:2025007630 TRFL2 "TRF-like 2" [Arabidopsi 0.121 0.123 0.379 1.4e-05
UNIPROTKB|E2R1W7442 TERF1 "Uncharacterized protein 0.265 0.386 0.259 5.3e-05
TAIR|locus:2030255 TRFL6 "TRF-like 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 824 (295.1 bits), Expect = 3.6e-82, P = 3.6e-82
 Identities = 244/659 (37%), Positives = 339/659 (51%)

Query:     1 METLVGAEGNGEGQFKESRIHKTNSTFSSPNLGADPVVYKLVRVDGDGKLVPATDDELME 60
             M T+VG   +    F E       + FSS N   +PV YKLVRV GDG LVPATD+E++E
Sbjct:     1 MGTVVGTVEDRRDMF-EGNAQTRITPFSSTNQIGNPVAYKLVRVSGDGSLVPATDEEILE 59

Query:    61 V---------------GNLLAD------DKIEMHLVADAGPTGRCIFNERSSSGMPKXXX 99
             V               G L  D      D+ +MH+ +DA  T   +  E   S + +   
Sbjct:    60 VNDTDMHIPSDTCQTIGYLATDEENVEVDETDMHIASDACQTIGYLPAEGIPSRLSQIES 119

Query:   100 XXXXXXXXXXXXDA----GKLNTHLESIEEMLTKAKQEESHLLACGSPDHSSTYVLVDGQ 155
                         +      ++ +  E  EEML K +QEE      GS    ST    + Q
Sbjct:   120 SEAINSGLLHSDNVQPYTDQVKSRSEYNEEMLQKVEQEERLENVHGS-QMPSTPADANIQ 178

Query:   156 CSDQHDTLRGIDEKLQSEIPXXXXXXXXXXXXXXXXXXXXIHGECSNSSNGLVEGQRSTS 215
             CS++++     ++++  E                      +   CSN+    V   + T+
Sbjct:   179 CSNENNFFE--EDQVHHE---------ALLQDECKMNESDMMERCSNA----VASPKETA 223

Query:   216 AVYTSSKPEFSRLMGEICLDNLSIKELHETFKATFGRETTVKDKQWLKRRIAMGLTNSCD 275
                 + KP+FSR+ GEICLDNL IK L ETF+ATFGR+TTVKDK WLKRRIAMGL NSCD
Sbjct:   224 LSAAAQKPDFSRVRGEICLDNLPIKALQETFRATFGRDTTVKDKTWLKRRIAMGLINSCD 283

Query:   276 VSTSSFIIKDNKLVSKGGEGSCNKEAIEDQAVKPVDGSGKESSLNPGSKMEDQQIVSSE- 334
             V T++  +KDNKL+     G+  K      A++   G    ++     KM+D    +   
Sbjct:   284 VPTTNLRVKDNKLI-----GNQEKSNDVTNAIRKEMGDDVRAT-----KMKDAPSSTDHV 333

Query:   335 RLRTCSKDYSCADEDPLKEQRNAKRIRKPTRRYIEELSEVESKEHGGKSIASVKNLGLGL 394
                +   ++  A ED   EQR AKR+RKPTRRYIEELSE + K+   KS+   K+  L  
Sbjct:   334 NGHSNGGNHYYASEDYSSEQRAAKRVRKPTRRYIEELSETDDKQQNDKSVIPSKDQRLSE 393

Query:   395 MSS-RSN----------TRPVRIASSNRITLRLDSLGGSGVQ---IXXXXXXXXXXXXKN 440
              S  RS           TR V +A S      +  +  S  +   +            K 
Sbjct:   394 KSEVRSISVSSGKRVTVTRMVSLAGSEIEVPYVSHVRRSRPRENIMALLGCHSSYLEDKA 453

Query:   441 VKALMEFHPNGIGMAAKLV-KEAVDVHSSEPNRESGGIVLKASSAPEQIQQQGQNMEPKN 499
               A    + +   +++++V +++V+  +S P +         ++    + +  Q MEP++
Sbjct:   454 SAAESNLNLSPSQLSSEVVNRDSVEKSASRPVQNEFA-TSDENNVEHILSEVDQEMEPEH 512

Query:   500 KDPSVYTPDDNPATVRAVKGG-VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFA 558
              D S  + D+N   V  ++GG +RRKHHRAWTLSE+ KLVEGVSKYGAG+WSEIK+  F+
Sbjct:   513 IDSSGNSSDENNIGVPIMQGGALRRKHHRAWTLSEIAKLVEGVSKYGAGKWSEIKKHLFS 572

Query:   559 SYSYRTSVDLKDKWRNLLKASLAQTPPDSRMGARKHASSVPIPMPVLLRVRELAEMQSQ 617
             S+SYRTSVDLKDKWRNLLK S AQ+P +S    +KH S + IP  +LLRVRELAE QSQ
Sbjct:   573 SHSYRTSVDLKDKWRNLLKTSFAQSPSNSVGSLKKHGS-MHIPTQILLRVRELAEKQSQ 630
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0009651 "response to salt stress" evidence=IEP
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA
GO:0010048 "vernalization response" evidence=RCA
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA
TAIR|locus:504955960 TRFL8 "TRF-like 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9LL45 TBP1 "Telomere-binding protein 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2148383 TRP1 "AT5G59430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075145 TRFL1 "TRF-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1RWI3 TERF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
TAIR|locus:2101232 TRFL9 "TRF-like 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2159048 TBP1 "AT5G13820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025007 TRFL2 "TRF-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E2R1W7 TERF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query643
cd1166050 cd11660, SANT_TRF, Telomere repeat binding factor- 1e-19
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 5e-09
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 6e-09
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 9e-07
pfam1392159 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do 5e-04
>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family Back     alignment and domain information 
 Score = 82.2 bits (204), Expect = 1e-19
 Identities = 29/51 (56%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 527 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 577
           R WT  E   LVEGV KYG G W++I +  +   + RTSVDLKDKWRNL K
Sbjct: 1   RKWTDEEDEALVEGVEKYGVGNWAKILK-DYFFVNNRTSVDLKDKWRNLKK 50

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 643
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 99.0
PLN03212 249 Transcription repressor MYB5; Provisional 98.81
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 98.73
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 98.63
PLN03091 459 hypothetical protein; Provisional 98.6
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 98.6
KOG0048 238 consensus Transcription factor, Myb superfamily [T 98.24
PLN03212249 Transcription repressor MYB5; Provisional 97.94
PLN03091 459 hypothetical protein; Provisional 97.79
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 97.32
KOG0457 438 consensus Histone acetyltransferase complex SAGA/A 97.14
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 96.97
KOG0048238 consensus Transcription factor, Myb superfamily [T 96.79
KOG0049 939 consensus Transcription factor, Myb superfamily [T 96.78
KOG0051 607 consensus RNA polymerase I termination factor, Myb 96.09
KOG0049 939 consensus Transcription factor, Myb superfamily [T 95.81
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 95.4
COG5114 432 Histone acetyltransferase complex SAGA/ADA, subuni 94.97
PF09111118 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain 94.55
PF13325199 MCRS_N: N-terminal region of micro-spherule protei 94.52
KOG0050 617 consensus mRNA splicing protein CDC5 (Myb superfam 93.08
KOG1279 506 consensus Chromatin remodeling factor subunit and 91.44
KOG4282 345 consensus Transcription factor GT-2 and related pr 91.19
PLN031421033 Probable chromatin-remodeling complex ATPase chain 89.56
COG5147 512 REB1 Myb superfamily proteins, including transcrip 89.11
COG5259 531 RSC8 RSC chromatin remodeling complex subunit RSC8 88.99
COG5147 512 REB1 Myb superfamily proteins, including transcrip 88.78
KOG0051607 consensus RNA polymerase I termination factor, Myb 81.02
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information 
Probab=99.00  E-value=2.6e-10  Score=87.67  Aligned_cols=48  Identities=35%  Similarity=0.610  Sum_probs=40.9

Q ss_pred             CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhh
Q 006474          526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLL  576 (643)
Q Consensus       526 rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLl  576 (643)
                      |.+||+||++.|+++|.+||.++|..|.....   .+||..+|+++|++++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~---~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMP---GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHS---SSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcC---CCCCHHHHHHHHHhhC
Confidence            57899999999999999999999999995321   4999999999999974

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices Back     alignment and domain information
>PF13325 MCRS_N: N-terminal region of micro-spherule protein Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query643
2roh_A122 The Dna Binding Domain Of Rtbp1 Length = 122 3e-10
2aje_A105 Solution Structure Of The Arabidopsis Thaliana Telo 5e-10
2qhb_A86 Crystal Structure Of Ngtrf Complexed With Telomeric 2e-09
2juh_A121 Solution Structure Of Dna Binding Domain Of Ngtrf1 3e-09
2ckx_A83 Crystal Structure Of Ngtrf1, Double-Stranded Telome 4e-09
1ba5_A53 Dna-Binding Domain Of Human Telomeric Protein, Htrf 7e-05
1iv6_A70 Solution Structure Of The Dna Complex Of Human Trf1 9e-05
1w0t_A53 Htrf1 Dna-Binding Domain In Complex With Telomeric 1e-04
1ity_A69 Solution Structure Of The Dna Binding Domain Of Hum 1e-04
>pdb|2ROH|A Chain A, The Dna Binding Domain Of Rtbp1 Length = 122 Back     alignment and structure 
Iteration: 1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 9/87 (10%)
Query: 522 RRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLA 581
           +R+  R +T++EV  LVE V   G GRW ++K  AF +  +RT VDLKDKW+ L+    A
Sbjct: 27  QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHT--A 84
Query: 582 QTPPDSRMGARKHASSVPIPMPVLLRV 608
              P  R GA       P+P  +L RV
Sbjct: 85  SIAPQQRRGA-------PVPQELLDRV 104
>pdb|2AJE|A Chain A, Solution Structure Of The Arabidopsis Thaliana Telomeric Repeat-Binding Protein Dna Binding Domain Length = 105 Back     alignment and structure
>pdb|2QHB|A Chain A, Crystal Structure Of Ngtrf Complexed With Telomeric Dna Length = 86 Back     alignment and structure
>pdb|2JUH|A Chain A, Solution Structure Of Dna Binding Domain Of Ngtrf1 Length = 121 Back     alignment and structure
>pdb|2CKX|A Chain A, Crystal Structure Of Ngtrf1, Double-Stranded Telomeric Repeat Binding Factor From Nicotiana Tabacum Length = 83 Back     alignment and structure
>pdb|1BA5|A Chain A, Dna-Binding Domain Of Human Telomeric Protein, Htrf1, Nmr, 18 Structures Length = 53 Back     alignment and structure
>pdb|1IV6|A Chain A, Solution Structure Of The Dna Complex Of Human Trf1 Length = 70 Back     alignment and structure
>pdb|1W0T|A Chain A, Htrf1 Dna-Binding Domain In Complex With Telomeric Dna. Length = 53 Back     alignment and structure
>pdb|1ITY|A Chain A, Solution Structure Of The Dna Binding Domain Of Human Trf1 Length = 69 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query643
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 9e-29
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 6e-27
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 3e-26
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 1e-24
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 8e-20
1vf9_A64 Telomeric repeat binding factor 2; MYB, helix-turn 6e-18
1w0u_A55 Telomeric repeat binding factor 2; telomere, DNA-b 3e-17
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 1e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 3e-07
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 1e-04
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 3e-04
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 5e-04
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83 Back     alignment and structure
 Score =  108 bits (272), Expect = 9e-29
 Identities = 35/91 (38%), Positives = 47/91 (51%), Gaps = 9/91 (9%)

Query: 527 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 586
           R ++++EV  LVE V   G GRW ++K  AF +  +RT VDLKDKW+ L+    A   P 
Sbjct: 1   RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT--ASIAPQ 58

Query: 587 SRMGARKHASSVPIPMPVLLRVRELAEMQSQ 617
            R G        P+P  +L RV       SQ
Sbjct: 59  QRRGE-------PVPQDLLDRVLAAHAYWSQ 82
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122 Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105 Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121 Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69 Back     alignment and structure
>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64 Back     alignment and structure
>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55 Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Length = 62 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query643
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 99.86
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 99.85
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 99.82
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 99.79
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 99.63
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 99.57
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 99.48
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 99.42
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 99.23
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 99.23
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 99.22
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 99.18
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 99.07
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 99.0
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 98.99
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 98.95
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 98.93
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 98.89
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 98.88
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 98.85
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 98.83
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 98.83
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 98.82
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 98.7
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 98.7
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 98.66
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 98.65
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 98.65
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 98.62
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 98.57
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 98.51
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 98.5
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 97.8
2cjj_A93 Radialis; plant development, DNA-binding protein, 98.22
1ign_A 246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 98.03
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 97.95
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 97.79
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 97.4
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 97.22
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 97.17
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 97.12
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 96.94
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 96.69
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 96.15
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 96.1
2xb0_X270 Chromo domain-containing protein 1; hydrolase, DNA 95.92
2crg_A70 Metastasis associated protein MTA3; transcription 95.42
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 95.13
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 94.76
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 94.59
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 94.22
2y9y_A374 Imitation switch protein 1 (DEL_ATPase); transcrip 93.84
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 92.79
1irz_A64 ARR10-B; helix-turn-helix, DNA binding protein; NM 92.39
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 86.35
2xb0_X 270 Chromo domain-containing protein 1; hydrolase, DNA 83.95
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 83.27
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 81.68
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
Probab=99.86  E-value=3.3e-22  Score=177.63  Aligned_cols=86  Identities=37%  Similarity=0.646  Sum_probs=75.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCCccccccccCCCCCC
Q 006474          521 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDSRMGARKHASSVPI  600 (643)
Q Consensus       521 krRKkrr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~~g~~~Rk~~~~~pi  600 (643)
                      ++|+++++||+||+++|++||++||.|+|+.|++.+|..|.+||++|||||||||++.+... |..     |   ...||
T Consensus         8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~-p~~-----~---rg~~~   78 (105)
T 2aje_A            8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKIS-PQQ-----R---RGEPV   78 (105)
T ss_dssp             -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCC-TTT-----T---TCCSC
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCC-ccc-----c---cCCCC
Confidence            56788999999999999999999999999999998777889999999999999999977652 332     1   36899


Q ss_pred             ChHHHHHHHHHHhhc
Q 006474          601 PMPVLLRVRELAEMQ  615 (643)
Q Consensus       601 P~~lL~RVreLA~~~  615 (643)
                      |+++|+||++|++..
T Consensus        79 P~~~l~rv~~~~~~~   93 (105)
T 2aje_A           79 PQELLNRVLNAHGYW   93 (105)
T ss_dssp             CCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999998774
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 643
d2ckxa183 a.4.1.3 (A:578-660) Telomere binding protein TBP1 2e-16
d1w0ta_52 a.4.1.4 (A:) DNA-binding domain of human telomeric 1e-10
d1w0ua_55 a.4.1.4 (A:) Telomeric repeat binding factor 2, TR 1e-08
d1guua_50 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 5e-05
d1xc5a168 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 7e-04
d1gvda_52 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 0.001
d1igna186 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba 0.003
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 72.4 bits (177), Expect = 2e-16
 Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 527 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 586
           R ++++EV  LVE V   G GRW ++K  AF +  +RT VDLKDKW+ L+  +       
Sbjct: 1   RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQR 60

Query: 587 SRMGARKHASSVPIPMPVLLRVRELAEMQSQ 617
                       P+P  +L RV       SQ
Sbjct: 61  RGE---------PVPQDLLDRVLAAHAYWSQ 82
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55 Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query643
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 99.76
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 99.6
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 99.57
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.22
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.2
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 98.96
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 98.86
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 98.86
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 98.76
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 98.68
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 98.65
d1x58a149 Hypothetical protein 4930532d21rik {Mouse (Mus mus 98.57
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 98.34
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 98.31
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 97.64
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 96.87
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 96.56
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 95.09
d1ofcx2128 SLIDE domain of the nucleosome remodeling ATPase I 92.24
d1fexa_59 Rap1 {Human (Homo sapiens) [TaxId: 9606]} 89.6
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.76  E-value=2.8e-19  Score=149.69  Aligned_cols=80  Identities=36%  Similarity=0.605  Sum_probs=69.0

Q ss_pred             CCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCCccccccccCCCCCCChHHHH
Q 006474          527 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDSRMGARKHASSVPIPMPVLL  606 (643)
Q Consensus       527 r~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~~g~~~Rk~~~~~piP~~lL~  606 (643)
                      |+||.||+++|++||++||.|+|+.|++..+..|.+||++|||||||||++......++.         ...++|+++|+
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~---------~~~~~p~ell~   71 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQR---------RGEPVPQDLLD   71 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGC---------CSSCCCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccc---------cCCCCCHHHHH
Confidence            699999999999999999999999999877777899999999999999999876642221         35689999999


Q ss_pred             HHHHHHhhc
Q 006474          607 RVRELAEMQ  615 (643)
Q Consensus       607 RVreLA~~~  615 (643)
                      +|.++-+..
T Consensus        72 ~v~~~~~~w   80 (83)
T d2ckxa1          72 RVLAAHAYW   80 (83)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987543
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure