Citrus Sinensis ID: 006478

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640---
MGAQEKSQANANPMQRVKVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQEPTGCSYIWDNICNVQRNLNFNSLNSETFHSMNSELRELPPIELSTLPLILKTVTESGIADQMRLTELILNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQVFLLPYPNFTSSLPV
ccccccccccccccccEEEEEEccccccEEcccEEEEEEEccccccEEEEEEEccccccEEEEEcccccccccccccEEEEEcccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHcHHHHHHHHHHccccccccccccHHHHHHccccccEEEEcccHHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccc
cccccccccccccccEEEEEEEccccccccccccEEEEEEEEcccccEEEEEEcccccEEEEEEEcccccHHccccEEEEEEcccccccEEEEccccccHHHHHHHHHHHHcccccccccHcccccccccccccccccHccHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHccHHHHHHHEHccccccccccHHHHHHHHcccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHEHcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccc
mgaqeksqananpmqrVKVYrlnddgkwddqgtghvtvdsMERSEELCLFVIDEEDNETILLhrispddiyrkqedtiiswrdpeystelalsfqeptgcsyiwdNICNvqrnlnfnslnSETFHSMnselrelppielstlPLILKTVTESGIADQMRLTELILNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIillnspqifeKIFGDELMMDIIGsleydpdvphvqhhRNFLkehvvfkeaipirdplvlskIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAYVVSLLKDDSTFIQELFArlrspttleESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVItascpqegiaqsassggrvestkpeILSNICELLCFCvlhhpyrikcNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQVFllpypnftsslpv
mgaqeksqananpmqrVKVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILlhrispddiyrkQEDTIISWRDPEYSTELALSFQEPTGCSYIWDNICNVQRNLNFNSLNSETFHSMNSELRELPPIELSTLPLILKTVTESGIADQMRLTELILNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEATVANlnsiihgnNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAqsassggrvesTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQVFLLpypnftsslpv
MGAQEKSQANANPMQRVKVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQEPTGCSYIWDNICNVQRNLNFNSLNSETFHSMNSELRELPPIELSTLPLILKTVTESGIADQMRLTELILNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCnfllnnvvdkvlllTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQVFLLPYPNFTSSLPV
******************VYRL*****W*****GHVTV*****SEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQEPTGCSYIWDNICNVQRNLNFNSLNSETFH*****LRELPPIELSTLPLILKTVTESGIADQMRLTELILNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCP*******************EILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQVFLLPYPNF******
******************VYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQEPTGCSYIWDNICNVQ********************RELPPIELSTLPLILKTVTESGIA*QMRLTELILNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTT**ESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTL*GAQRDTIIEIFYEKHLGQLIDVITASCP***************STKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVK******************
***********NPMQRVKVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQEPTGCSYIWDNICNVQRNLNFNSLNSETFHSMNSELRELPPIELSTLPLILKTVTESGIADQMRLTELILNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEG*************TKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQVFLLPYPNFTSSLPV
*************MQRVKVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQEPTGCSYIWDNICNVQRNLNFNSLN*ETFHSMNSELRELPPIELSTLPLILKTVTESGIADQMRLTELILNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQVFL************
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MGAQEKSQANANPMQRVKVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQEPTGCSYIWDNICNVQRNLNFNSLNSETFHSMNSELRELPPIELSTLPLILKTVTESGIADQMRLTELILNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQVFLLPYPNFTSSLPV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query643 2.2.26 [Sep-21-2011]
Q5SP90 818 Serine/threonine-protein yes no 0.939 0.738 0.377 1e-119
Q4S6U8 818 Serine/threonine-protein N/A no 0.939 0.738 0.371 1e-115
Q6INN7 822 Serine/threonine-protein N/A no 0.937 0.733 0.381 1e-114
Q6P2K6 820 Serine/threonine-protein yes no 0.937 0.735 0.366 1e-113
Q6IN85 833 Serine/threonine-protein yes no 0.937 0.723 0.358 1e-111
Q6DFT3 820 Serine/threonine-protein no no 0.956 0.75 0.357 1e-110
Q801Q7 820 Serine/threonine-protein N/A no 0.956 0.75 0.354 1e-109
Q7ZX60 820 Serine/threonine-protein N/A no 0.956 0.75 0.356 1e-109
Q922R5 820 Serine/threonine-protein no no 0.956 0.75 0.351 1e-107
Q5MIZ7 849 Serine/threonine-protein no no 0.956 0.724 0.341 1e-103
>sp|Q5SP90|PP4R3_DANRE Serine/threonine-protein phosphatase 4 regulatory subunit 3 OS=Danio rerio GN=smek1 PE=1 SV=1 Back     alignment and function desciption
 Score =  428 bits (1101), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 241/638 (37%), Positives = 382/638 (59%), Gaps = 34/638 (5%)

Query: 15  QRVKVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQ 74
           +RVKVY LN+D +WDD+GTGHV+   +ER + + L V  E D   +L  +I+P+  Y+KQ
Sbjct: 6   RRVKVYTLNEDRQWDDRGTGHVSSAYVERLKGMSLLVRAESDGSLLLESKINPNTAYQKQ 65

Query: 75  EDTIISWRDPEYSTELALSFQEPTGCSYIWDNICNVQRNLN--------FNSLNSETFHS 126
           +DT+I W + E + +LALSFQE  GC  IW+ IC VQ             +    E F  
Sbjct: 66  QDTLIVWSEAE-NYDLALSFQEKAGCDEIWEKICQVQGKDPSVDITQELIDESEEERFDD 124

Query: 127 MNSELRELPPIELSTLPLILKTVTESGIADQMRLTELIL--NDQDFFRKLMDLFRICEDL 184
           M+S   ELPP ELS L  + + V  S +   +R  +L L   ++ + RKL++LFR+CEDL
Sbjct: 125 MSSPGLELPPCELSRLEEVAELVA-SSLPSPLRREKLALALENEGYIRKLLELFRVCEDL 183

Query: 185 ENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHVQHHRNFLKEH 244
           EN +GLH ++ IIKGI LLN   +FE +F +E +MD+IG LE+DP +P  + HR FL   
Sbjct: 184 ENREGLHHLYDIIKGIFLLNRTALFEVMFSEECIMDVIGCLEFDPSLPQPRRHREFLTTT 243

Query: 245 VVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVL--ARVLDEATVANLNSIIHGNNAYVVSL 302
             FKE IPI DP +  KIHQTYRV Y++D+VL    V +E  ++ L+S I  N   +V +
Sbjct: 244 ARFKEVIPISDPELRQKIHQTYRVQYIQDMVLPTPSVFEENMLSTLHSFIFFNKVEIVGM 303

Query: 303 LKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIF 362
           L+DD  F+ ELFA+L    T ++ +  LV+FL EFC  S++LQ   +   F+ L N GI 
Sbjct: 304 LQDDEKFLTELFAQLTDEATDDDKRHELVNFLKEFCAFSQTLQPQNRDAFFKTLSNMGIL 363

Query: 363 DIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQ-----EGIPLLGLLVKGMIT 417
             +   L   D ++    TDI    +  +P+++R +V+++     + I L+ L+++ MI 
Sbjct: 364 QALEVILGMDDVQVRGAATDIFSYLVEYNPSMVREFVMQESQQNDDDILLINLIIEHMIC 423

Query: 418 DFGEDM--HCQFLEILRSLLDS----YTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQE 471
           D   ++    Q + +LR+L+D      T +  ++   +  FY+  +  L   + A+  +E
Sbjct: 424 DTDPELGGAVQLMGLLRTLVDPENMLATANKTEKTEFLSFFYKHCMHVLSAPLLANTTEE 483

Query: 472 GIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLN-NVVDKVLLLTRRRE 530
             ++        +    ++L+ I ELL FCV HH Y IK N+++N +++ +VL+LT  + 
Sbjct: 484 KPSKD-------DFQTCQLLALIVELLTFCVEHHTYHIK-NYIINKDILRRVLVLTASQH 535

Query: 531 KYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYI 590
            +L + A+RF+R I+   DE    + ++N L +P+V AF+ NG+RYNL+NSA++E+FEY+
Sbjct: 536 AFLALCALRFMRKIIGLKDEFYNRYIMRNFLFEPVVKAFLNNGSRYNLINSAIIEMFEYV 595

Query: 591 RKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQ 628
           R E++KSL  +I++++W  L + +Y+ +    K++YEQ
Sbjct: 596 RVEDVKSLTAHIIENYWKGLEDVDYVQTFKGLKLRYEQ 633
Regulatory subunit of serine/threonine-protein phosphatase 4.
Danio rerio (taxid: 7955)
>sp|Q4S6U8|PP4R3_TETNG Serine/threonine-protein phosphatase 4 regulatory subunit 3 OS=Tetraodon nigroviridis GN=smek1 PE=3 SV=1 Back     alignment and function description
>sp|Q6INN7|PP4R3_XENLA Serine/threonine-protein phosphatase 4 regulatory subunit 3 OS=Xenopus laevis GN=smek1 PE=2 SV=1 Back     alignment and function description
>sp|Q6P2K6|P4R3A_MOUSE Serine/threonine-protein phosphatase 4 regulatory subunit 3A OS=Mus musculus GN=Smek1 PE=1 SV=1 Back     alignment and function description
>sp|Q6IN85|P4R3A_HUMAN Serine/threonine-protein phosphatase 4 regulatory subunit 3A OS=Homo sapiens GN=SMEK1 PE=1 SV=1 Back     alignment and function description
>sp|Q6DFT3|PP4R3_XENTR Serine/threonine-protein phosphatase 4 regulatory subunit 3 OS=Xenopus tropicalis GN=smek2 PE=2 SV=1 Back     alignment and function description
>sp|Q801Q7|P4R3B_XENLA Serine/threonine-protein phosphatase 4 regulatory subunit 3-B OS=Xenopus laevis GN=smek2-b PE=2 SV=1 Back     alignment and function description
>sp|Q7ZX60|P4R3A_XENLA Serine/threonine-protein phosphatase 4 regulatory subunit 3-A OS=Xenopus laevis GN=smek2-a PE=2 SV=1 Back     alignment and function description
>sp|Q922R5|P4R3B_MOUSE Serine/threonine-protein phosphatase 4 regulatory subunit 3B OS=Mus musculus GN=Smek2 PE=2 SV=2 Back     alignment and function description
>sp|Q5MIZ7|P4R3B_HUMAN Serine/threonine-protein phosphatase 4 regulatory subunit 3B OS=Homo sapiens GN=SMEK2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query643
255556336 884 conserved hypothetical protein [Ricinus 0.979 0.712 0.876 0.0
224108663 861 predicted protein [Populus trichocarpa] 0.979 0.731 0.864 0.0
224101583 878 predicted protein [Populus trichocarpa] 0.975 0.714 0.852 0.0
225431916 885 PREDICTED: serine/threonine-protein phos 0.979 0.711 0.843 0.0
356521791 880 PREDICTED: serine/threonine-protein phos 0.979 0.715 0.817 0.0
356564712 881 PREDICTED: serine/threonine-protein phos 0.979 0.715 0.814 0.0
356521793 897 PREDICTED: serine/threonine-protein phos 0.979 0.702 0.796 0.0
356556026 869 PREDICTED: serine/threonine-protein phos 0.979 0.724 0.812 0.0
449503893650 PREDICTED: serine/threonine-protein phos 0.984 0.973 0.796 0.0
356532525 867 PREDICTED: serine/threonine-protein phos 0.979 0.726 0.812 0.0
>gi|255556336|ref|XP_002519202.1| conserved hypothetical protein [Ricinus communis] gi|223541517|gb|EEF43066.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score = 1154 bits (2985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 560/639 (87%), Positives = 603/639 (94%), Gaps = 9/639 (1%)

Query: 1   MGAQEKSQANANPMQRVKVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETI 60
           MGAQ+KSQA +NPMQRVKVYRLN+DGKWDDQGTGHVTVD +ERSEEL L+VIDEEDNET+
Sbjct: 1   MGAQDKSQATSNPMQRVKVYRLNEDGKWDDQGTGHVTVDYLERSEELGLYVIDEEDNETL 60

Query: 61  LLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQEPTGCSYIWDNICNVQRNLNFNSLN 120
           LLHRI PDDIYRKQEDTIISWRDPE+STELALSFQE TGCSYIWD+ICNVQR+L F++LN
Sbjct: 61  LLHRIIPDDIYRKQEDTIISWRDPEFSTELALSFQETTGCSYIWDHICNVQRSLQFSTLN 120

Query: 121 SETFHSMNSELRELPPIELSTLPLILKTVTESGIADQMRLTELILNDQDFFRKLMDLFRI 180
           +ETFHSMNSELRELP +ELSTLPLILKTV+ESGIADQMRLTELILNDQ+FFRKLMDLFRI
Sbjct: 121 NETFHSMNSELRELPAVELSTLPLILKTVSESGIADQMRLTELILNDQNFFRKLMDLFRI 180

Query: 181 CEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHVQHHRNF 240
           CEDL+N DGLHMIFKI++GII LNSPQIFEKIFGDEL+MDIIGSLEYDP++ H+QHHRNF
Sbjct: 181 CEDLDNTDGLHMIFKIVRGIIFLNSPQIFEKIFGDELIMDIIGSLEYDPEIAHIQHHRNF 240

Query: 241 LKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAYVV 300
           LKEHVVFKEAIPI+DP+VLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNA VV
Sbjct: 241 LKEHVVFKEAIPIKDPVVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAVVV 300

Query: 301 SLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEG 360
           SLLKDDSTFIQELFARLRSPTT  ESKKNLV+FLHEFC LSKSLQMVQQLRLFRDL+NEG
Sbjct: 301 SLLKDDSTFIQELFARLRSPTTSAESKKNLVYFLHEFCSLSKSLQMVQQLRLFRDLVNEG 360

Query: 361 IFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFG 420
           IFDI+T+ALQ QDKKL+LTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFG
Sbjct: 361 IFDIITEALQDQDKKLILTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFG 420

Query: 421 EDMHCQFLEILRSLLDSYTLSG--AQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSA- 477
           EDMHCQFLEILRSLLDSYTLSG  AQRD+IIEIFYEKHLGQLIDVITASCP E I QS+ 
Sbjct: 421 EDMHCQFLEILRSLLDSYTLSGAHAQRDSIIEIFYEKHLGQLIDVITASCPVESIVQSSD 480

Query: 478 -SSGG--RVE---STKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREK 531
            SSG   RVE   S KPEILSNICELLCFCVLHHPYRIKCNFLLNN++DKVL+LTRRREK
Sbjct: 481 RSSGSNRRVENQNSVKPEILSNICELLCFCVLHHPYRIKCNFLLNNIIDKVLMLTRRREK 540

Query: 532 YLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIR 591
           YLVVAAVRFVRTILSRHDEHL NHFVK+NLLKPIVDAFV NGNRYNLL+SA+LELFE+IR
Sbjct: 541 YLVVAAVRFVRTILSRHDEHLTNHFVKHNLLKPIVDAFVGNGNRYNLLHSAILELFEHIR 600

Query: 592 KENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQVF 630
           KENLK L+KYIVDSFWN+LV FE+LAS+ +FKVKYEQ  
Sbjct: 601 KENLKVLIKYIVDSFWNELVKFEHLASIQAFKVKYEQCL 639

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224108663|ref|XP_002314928.1| predicted protein [Populus trichocarpa] gi|222863968|gb|EEF01099.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224101583|ref|XP_002312340.1| predicted protein [Populus trichocarpa] gi|222852160|gb|EEE89707.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225431916|ref|XP_002276905.1| PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356521791|ref|XP_003529534.1| PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356564712|ref|XP_003550593.1| PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356521793|ref|XP_003529535.1| PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356556026|ref|XP_003546328.1| PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 3-like [Glycine max] Back     alignment and taxonomy information
>gi|449503893|ref|XP_004162219.1| PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356532525|ref|XP_003534822.1| PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 3-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query643
UNIPROTKB|F6R1L1 820 SMEK1 "Uncharacterized protein 0.942 0.739 0.371 1.2e-106
MGI|MGI:1915984 820 Smek1 "SMEK homolog 1, suppres 0.942 0.739 0.369 1.2e-106
UNIPROTKB|G3V5Z3706 SMEK1 "Uncharacterized protein 0.942 0.858 0.369 1.5e-106
UNIPROTKB|F1SD90 820 SMEK1 "Uncharacterized protein 0.942 0.739 0.369 1.5e-106
UNIPROTKB|Q6IN85 833 SMEK1 "Serine/threonine-protei 0.600 0.463 0.41 2.4e-106
UNIPROTKB|F1NPW9 844 SMEK1 "Uncharacterized protein 0.942 0.718 0.369 1.1e-105
MGI|MGI:2144474 820 Smek2 "SMEK homolog 2, suppres 0.698 0.547 0.356 3.5e-105
UNIPROTKB|Q5MIZ7 849 SMEK2 "Serine/threonine-protei 0.698 0.528 0.356 5.8e-103
UNIPROTKB|E1BFZ3 767 SMEK2 "Uncharacterized protein 0.698 0.585 0.354 1.1e-95
FB|FBgn0024555 980 flfl "falafel" [Drosophila mel 0.933 0.612 0.345 2.6e-95
UNIPROTKB|F6R1L1 SMEK1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
 Score = 1055 (376.4 bits), Expect = 1.2e-106, P = 1.2e-106
 Identities = 236/636 (37%), Positives = 369/636 (58%)

Query:    15 QRVKVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQ 74
             +RVKVY LN+D +WDD+GTGHV+   +ER + + L V  E D   +L  +I+P+  Y+KQ
Sbjct:     6 RRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNTAYQKQ 65

Query:    75 EDTIISWRDPEYSTELALSFQEPTGCSYIWDNICNVQR---NLNF-----NSLNSETFHS 126
             +DT+I W + E + +LALSFQE  GC  IW+ IC VQ    +++      +    E F  
Sbjct:    66 QDTLIVWSEAE-NYDLALSFQEKAGCDEIWEKICQVQGKDPSVDITQDLVDESEEERFDD 124

Query:   127 MNSELRELPPIELSTLPLILKTVTESGIADQMRLTELIL--NDQDFFRKLMDLFRICEDL 184
             M+S   ELP  ELS L  I + V  S +   +R  +L L   ++ + +KL++LF +CEDL
Sbjct:   125 MSSPGLELPSCELSRLEEIAELVASS-LPSPLRREKLALALENEGYIKKLLELFHVCEDL 183

Query:   185 ENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHVQHHRNFLKEH 244
             ENI+GLH +++IIKGI LLN   +FE +F +E +MD+IG LEYDP +   + HR FL + 
Sbjct:   184 ENIEGLHHLYEIIKGIFLLNRTALFEVMFSEECIMDVIGCLEYDPALSQPRKHREFLTKT 243

Query:   245 VVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLAR--VLDEATVANLNSIIHGNNAYVVSL 302
               FKE IPI DP +  KIHQTYRV Y++D+VL    V +E  ++ L+S I  N   +V +
Sbjct:   244 AKFKEVIPISDPELKQKIHQTYRVQYIQDMVLPTPSVFEENMLSTLHSFIFFNKVEIVGM 303

Query:   303 LKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIF 362
             L++D  F+ +LFA+L    T EE ++ LV+FL EFC  S++LQ   +   F+ L N GI 
Sbjct:   304 LQEDEKFLTDLFAQLTDEATDEEKRQELVNFLKEFCAFSQTLQPQNRDAFFKTLSNMGIL 363

Query:   363 DIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQ-----EGIPLLGLLVKGMIT 417
               +   L   D ++    TDI    +  +P+++R +V+++     + I L+ L+++ MI 
Sbjct:   364 PALEVILGMDDTQVRSAATDIFSYLVEYNPSMVREFVMQEAQQNDDDILLINLIIEHMIC 423

Query:   418 DFGEDMH--CQFLEILRSLLDSYT-LSGAQRDTIIEI--FYEKHLGQLIDVITASCPQEG 472
             D   ++    Q + +LR+L+D    L+ A +    E   F+ KH    + V+TA      
Sbjct:   424 DTDPELGGAVQLMGLLRTLVDPENMLATANKTEKTEFLGFFYKHC---MHVLTAPLLANT 480

Query:   473 IAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCXXXXXXXXXXXXXXTRRREKY 532
                  S     +    ++L+ + ELL FCV HH Y IK                  +  +
Sbjct:   481 TEDKPSKD---DFQTAQLLALVLELLTFCVEHHTYHIKNYIINKDILRRVLVLMASKHAF 537

Query:   533 LVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK 592
             L + A+RF R I+   DE    + +K+ L +P+V AF+ NG+RYNL+NSA++E+FE+IR 
Sbjct:   538 LALCALRFKRKIIGLKDEFYNRYIMKSFLFEPVVKAFLNNGSRYNLMNSAIIEMFEFIRV 597

Query:   593 ENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQ 628
             E++KSL  ++V+++W  L + +Y+ +    K+++EQ
Sbjct:   598 EDIKSLTAHVVENYWKALEDVDYVQTFKGLKLRFEQ 633
GO:0045722 "positive regulation of gluconeogenesis" evidence=IEA
GO:0030289 "protein phosphatase 4 complex" evidence=IEA
GO:0006470 "protein dephosphorylation" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0005634 "nucleus" evidence=IEA
MGI|MGI:1915984 Smek1 "SMEK homolog 1, suppressor of mek1 (Dictyostelium)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|G3V5Z3 SMEK1 "Uncharacterized protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SD90 SMEK1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q6IN85 SMEK1 "Serine/threonine-protein phosphatase 4 regulatory subunit 3A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NPW9 SMEK1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:2144474 Smek2 "SMEK homolog 2, suppressor of mek1 (Dictyostelium)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q5MIZ7 SMEK2 "Serine/threonine-protein phosphatase 4 regulatory subunit 3B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BFZ3 SMEK2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
FB|FBgn0024555 flfl "falafel" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query643
pfam04802193 pfam04802, SMK-1, Component of IIS longevity pathw 2e-90
>gnl|CDD|147119 pfam04802, SMK-1, Component of IIS longevity pathway SMK-1 Back     alignment and domain information 
 Score =  277 bits (712), Expect = 2e-90
 Identities = 97/193 (50%), Positives = 135/193 (69%), Gaps = 1/193 (0%)

Query: 165 LNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGS 224
           L ++D+  KL+ LF +CEDLEN+D LH++  I+K +ILLN  QI E I  DE +M ++G 
Sbjct: 1   LENEDYIPKLIPLFHMCEDLENLDDLHLLCNIVKTLILLNDSQILEIILSDENIMGVVGC 60

Query: 225 LEYDPDVPHVQ-HHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEA 283
           LEYDP+ P  + +HR FL ++  FKE IPI++P +  KIHQTYR+ YLKDVVL RVLD+ 
Sbjct: 61  LEYDPEFPQPKANHRQFLTQNAKFKEVIPIKNPELRQKIHQTYRLQYLKDVVLPRVLDDN 120

Query: 284 TVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKS 343
           T + LNS I  N   +V+LL+DD  F++ELFA L   +T +E +++LV FLHEFC ++KS
Sbjct: 121 TFSTLNSFIFFNQVEIVTLLQDDEKFLEELFALLTDSSTSDERRRDLVLFLHEFCNIAKS 180

Query: 344 LQMVQQLRLFRDL 356
           LQ   +   F+ L
Sbjct: 181 LQPQSRSTFFKTL 193

SMK-1 is a component of the IIs longevity pathway which regulates aging in C.elegans. Specifically, SMK-1 influences DAF-16-dependant regulation of the aging process by regulating the transcriptional specificity of DAF-16 activity. SMK-1 plays a role in longevity by modulating the transcriptional specificity of DAF-16. Length = 193

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 643
KOG2175458 consensus Protein predicted to be involved in carb 100.0
PF04802193 SMK-1: Component of IIS longevity pathway SMK-1; I 100.0
cd00835122 RanBD Ran-binding domain. Ran-binding domain; This 98.59
PF00638122 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is 98.3
cd00837104 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homolog 97.8
smart00160130 RanBD Ran-binding domain. Domain of apporximately 97.74
PF00568111 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1 97.72
PF10508 503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 96.19
smart00461106 WH1 WASP homology region 1. Region of the Wiskott- 95.87
KOG2175 458 consensus Protein predicted to be involved in carb 95.86
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 95.71
cd01207111 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. 93.72
PF01602 526 Adaptin_N: Adaptin N terminal region; InterPro: IP 93.11
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 92.13
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 91.41
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 91.12
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 90.34
PF06058122 DCP1: Dcp1-like decapping family; InterPro: IPR010 89.66
cd01205105 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. 89.4
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 89.17
cd01206111 Homer Homer type EVH1 domain. Homer type EVH1 doma 86.96
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 86.68
PF04499475 SAPS: SIT4 phosphatase-associated protein; InterPr 85.63
PTZ00429 746 beta-adaptin; Provisional 80.16
>KOG2175 consensus Protein predicted to be involved in carbohydrate metabolism [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-92  Score=756.97  Aligned_cols=442  Identities=44%  Similarity=0.746  Sum_probs=419.2

Q ss_pred             ChhhHHHHHHHHhcchHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHhcCChhhHhhhhcchhHhHHhhhcccCCCCC
Q 006478          153 GIADQMRLTELILNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVP  232 (643)
Q Consensus       153 ~~~~r~~l~~~i~~~~~Yi~kL~~lF~~~Edle~~~~L~~L~~Ivk~iillNd~~i~E~llsDe~i~~vvG~LEYDp~~p  232 (643)
                      ++..|++.+.++ ++++||++|+++|+.|||++++++||++++|+|+|+++|...|+|.|++|++||+++|||||||++|
T Consensus         5 ~~~~r~~~~~~i-e~e~~f~~Li~lF~~Ced~e~~d~L~~l~~Iik~i~~ln~~~iLe~~~~d~~im~v~g~lEydp~~~   83 (458)
T KOG2175|consen    5 TDQRREKLVLAL-ENENYFQKLIELFHTCEDLENTDGLHHLFSIIKNIFLLNKSDILESIFDDECIMDVIGCLEYDPAVP   83 (458)
T ss_pred             cHHHHHHHHHHH-hcchHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCchHHHHHhccccccccccccccCccCC
Confidence            345667666555 5689999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchHHhhhhcCCceeeeecCChHHHHHHHhhheeceeeehhcc--cccchhhHHhhHHHHHhhHHHHHHHhhcCHHHH
Q 006478          233 HVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLA--RVLDEATVANLNSIIHGNNAYVVSLLKDDSTFI  310 (643)
Q Consensus       233 ~~~~HR~fL~~~~~FkeVVpi~d~~i~~kIHqtyRlqYLKDVVL~--r~lDD~t~s~LnS~I~fN~~eIV~~Lq~d~~fL  310 (643)
                      ++++||+|+...++|||||||.||++++|||||||+|||||+|||  +++||+++++++|+||+|+++||++||+|..|+
T Consensus        84 ~~k~HR~~l~~~~~f~e~ipi~dp~ll~kIhqt~r~q~l~d~vl~~~~~~~~a~~~~l~s~i~~~~~~ii~~lqed~~~l  163 (458)
T KOG2175|consen   84 QSKKHREFLSLLAKFKEVIPISDPELLAKIHQTFRVQYLKDVVLPEPGVFDEATGNTLNSFIFFNKVNIVSLLQEDEKFL  163 (458)
T ss_pred             ChhhhHHHHHhhccceeeeecCCHHHHHHHHHHHHHHHhheeeecCCcchhcchhHHHHHHHHHhhhhhhhhhhcCchHH
Confidence            988899999999999999999999999999999999999999999  899999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHhc
Q 006478          311 QELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ  390 (643)
Q Consensus       311 ~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie~  390 (643)
                      .+||+++++++++.++|++++.|+||+|.++|++|++.|.+||++|++.||++++++++..+|.++|.+++||+..++|+
T Consensus       164 ~eLf~~l~~~~t~~qkr~~li~~lke~c~~s~~L~~~~~~~~fkTlv~~~i~~~le~~~~~~d~~~r~~~~di~~~~ve~  243 (458)
T KOG2175|consen  164 IELFARLRSESTDDQKRDDLVHFLKEFCSFSKALQPQSRDAFFKTLVNKGILDALEYVLKMPDTQVRSAATDILARLVEM  243 (458)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHhcCCcc-----hHHHHHHHHhcCCChhH--HHHHHHHHHHhcCCCCCCch--hhhHHHHHHHHhhHHHHH
Q 006478          391 DPNLLRSYVVRQEGIP-----LLGLLVKGMITDFGEDM--HCQFLEILRSLLDSYTLSGA--QRDTIIEIFYEKHLGQLI  461 (643)
Q Consensus       391 dp~lvR~~i~~q~~~~-----Ll~~Li~~ll~d~~~gl--~~Q~~e~lk~LLDp~~~~~~--e~d~fl~~FY~~~~~~L~  461 (643)
                      +|.++|++...++..+     +++.++++++++.++.+  .+|++.+++++|||++|.++  ++.+|+++||+.|++.+.
T Consensus       244 ~~~~i~~~~~~~~~~~~~~~~~~nl~~s~~l~d~d~~~~~~s~~~~i~~tll~~~~~~~~~~~~se~l~~~~~~c~~~~~  323 (458)
T KOG2175|consen  244 SPSMIRSFTLGEALDPDDEKLLLNLAISHMLEDFDPELSGASQLMLILSTLLDPENMLTLASEKSEFLNFFYKHCMHSLS  323 (458)
T ss_pred             CHHHHHHHHHHhhcCchhhHHHHHHHHHhhccccCccccchHHHHHHHHHhhCccccCCccchhHHHhhhhhccccccCC
Confidence            9999999998875444     89999999999888855  48999999999999999985  899999999999999998


Q ss_pred             HHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcccchhhHHHHHHH
Q 006478          462 DVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFV  541 (643)
Q Consensus       462 ~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~  541 (643)
                      +|.......              .++++.+..++|++|||+.||+|+||+|++++++++||+.|+++++++|+++|+||.
T Consensus       324 ~p~~~~~~s--------------~~sa~~~~v~~~~l~fc~~~~s~si~n~~~~~d~~~~vlvl~~s~~~~l~~~a~~~~  389 (458)
T KOG2175|consen  324 APLVGNTSS--------------NQSAQNLSVILELLTFCVEHHSFSIKNYIVSSDLLNKVLVLMSSKHSFLVLGALRYL  389 (458)
T ss_pred             Ccchhhccc--------------ccccchhhhhhhhhhHHHHhcccccccHhhcchhhccceehhccccHHHHHHHHHhh
Confidence            887653211              146778899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCChhHHHHHHHhhCChHHHHHHHhHhCCCCcchHHHHHHHHHHHHhcChHHHHHHHHHHhHhccc
Q 006478          542 RTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLV  611 (643)
Q Consensus       542 R~ii~l~D~fy~ryiik~~lf~Pv~~~~~~n~~r~NLlnSa~Lelfe~Ir~enik~Li~hlve~y~~~l~  611 (643)
                      |.++.++|++|+||++++  ++|+++.|.+||.||||+|||++++|||||.||+|+|++|+|++||+.++
T Consensus       390 ~~~~~L~d~~~~~~ivk~--~~p~~~~~~~n~trynll~s~~l~l~efi~~e~~k~l~~~~v~~~~~~~~  457 (458)
T KOG2175|consen  390 RKIPILEDEKYNKYIVKS--FKPVIDGFIENGTRYNLLNSAVLELFEFIRVEDIKPLLSYIVENFQNGLA  457 (458)
T ss_pred             hccchhchHHHHHHHhhc--cccchhhHhhcCChhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhhcc
Confidence            999999999999999999  99999999999999999999999999999999999999999999999875

>PF04802 SMK-1: Component of IIS longevity pathway SMK-1; InterPro: IPR006887 This is a conserved region which characterises a number of eukaryotic proteins of unknown function Back     alignment and domain information
>cd00835 RanBD Ran-binding domain Back     alignment and domain information
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm Back     alignment and domain information
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain Back     alignment and domain information
>smart00160 RanBD Ran-binding domain Back     alignment and domain information
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>smart00461 WH1 WASP homology region 1 Back     alignment and domain information
>KOG2175 consensus Protein predicted to be involved in carbohydrate metabolism [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping Back     alignment and domain information
>cd01205 WASP WASP-type EVH1 domain Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>cd01206 Homer Homer type EVH1 domain Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein [] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query643
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-09
1ddw_A120 GLGF-domain protein homer; pleckstrin homology dom 2e-04
1i2h_A168 PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 3e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 72.2 bits (176), Expect = 3e-13
 Identities = 77/571 (13%), Positives = 171/571 (29%), Gaps = 162/571 (28%)

Query: 150 TESGIADQMRLT--ELILNDQDFFRKLMDLFRICEDLENIDGLHMIFK------IIK--- 198
            E+G   + +    +++   +D F    D    C+D++  D    I        II    
Sbjct: 9   FETG---EHQYQYKDILSVFEDAFVDNFD----CKDVQ--DMPKSILSKEEIDHIIMSKD 59

Query: 199 ---------GIILLNSPQIFEKIFGDELMMD---IIGSLEYDPDVPHV-------QHHRN 239
                      +L    ++ +K   + L ++   ++  ++ +   P +       Q  R 
Sbjct: 60  AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119

Query: 240 FLKEHVVFKEAIPIRDPL-----VLSKIHQTYRV------GYLKDVVLARVL-DEATVAN 287
           +    V  K  +    P       L ++     V      G  K  V   V         
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179

Query: 288 LNSIIH----GNNAYVVSLLKDDSTFIQELFARLRSP-TTLEESKKNLVHFLHEFCGLSK 342
           ++  I      N     ++L+     +Q+L  ++    T+  +   N+   +H      +
Sbjct: 180 MDFKIFWLNLKNCNSPETVLE----MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 343 SLQMVQQ----LRLFRDLMNEGI---FDI------------VTDALQSQ--------DKK 375
            L   +     L +  ++ N      F++            VTD L +            
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 376 LVLT---GTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILR 432
           + LT      +L+ +L+  P  L   V+     P        +I +   D    +     
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLT--TNPR----RLSIIAESIRDGLATWDNWKH 349

Query: 433 SLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQE-GIAQSASSGGRVESTK-PEI 490
              D  T       TIIE         L             +           S   P I
Sbjct: 350 VNCDKLT-------TIIESSLN----VLEPAEYRKMFDRLSVFP--------PSAHIPTI 390

Query: 491 LSNICELLCFCVL-HHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHD 549
           L          ++     +     ++N +     L+ ++ ++  +           S   
Sbjct: 391 L--------LSLIWFDVIKSDVMVVVNKLHKY-SLVEKQPKESTI-----------SIPS 430

Query: 550 EHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQ 609
            +L         LK  ++      N Y L + ++++ +   +  +   L+   +D ++  
Sbjct: 431 IYL--------ELKVKLE------NEYAL-HRSIVDHYNIPKTFDSDDLIPPYLDQYF-- 473

Query: 610 LVNFEYLASLHSFKVKYEQVF-LLP--YPNF 637
              + ++   H   +++ +   L    + +F
Sbjct: 474 ---YSHIGH-HLKNIEHPERMTLFRMVFLDF 500
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A* Length = 120 Back     alignment and structure
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4 Length = 168 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query643
1rrp_B134 Nuclear pore complex protein NUP358; complex (smal 98.9
1xke_A130 RAN-binding protein 2; beta barrel, pleckstrin-hom 98.16
3n7c_A130 ABR034WP; nuclear pore complex, NUP2, RAN-binding 98.11
2ec1_A125 Nucleoporin 50 kDa; ranbp domain, nuclear pore-ass 98.04
1k5d_B201 RAN-specific GTPase-activating protein; ranbp1, ra 98.0
4hat_B140 RAN-specific GTPase-activating protein 1; heat rep 97.97
3m1i_B191 RAN-specific GTPase-activating protein 1; heat rep 97.89
2crf_A150 RAN binding protein 3; RAN_BP1 domain, ranbp3, str 97.82
2y8g_A138 Ranbp3-B, RAN-binding protein 3; protein transport 97.8
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 97.79
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.54
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 97.32
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 97.23
1qc6_A130 EVH1 domain from ENA/VAsp-like protein; AN incompl 97.23
4b8j_A 528 Importin subunit alpha-1A; transport protein, nucl 97.19
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 97.1
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 97.06
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 96.9
1wa5_B 530 Importin alpha subunit; nuclear transport/complex, 96.89
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 96.88
1evh_A112 WH1 domain, protein (MENA EVH1 domain); molecular 96.82
1egx_A115 VAsp, vasodilator-stimulated phosphoprotein; EVH1, 96.74
1ddw_A120 GLGF-domain protein homer; pleckstrin homology dom 96.73
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 96.65
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 96.6
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 96.51
3tpo_A 529 Importin subunit alpha-2; nuclear import, protein 96.49
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 96.32
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 96.06
1i2h_A168 PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 96.06
3ul1_B 510 Importin subunit alpha-2; arm repeat, armadillo re 95.71
2jp2_A126 Spred-2, sprouty-related, EVH1 domain-containing p 95.48
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 95.34
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 95.28
1xod_A118 Spred1; sprouty, EVH1, peptide-binding, signaling 95.04
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 95.03
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 94.71
1mke_A152 WIP - N-WAsp, fusion protein consisting of wiskott 94.62
2ifs_A169 N-WAsp, wiskott-aldrich syndrome protien ineractin 94.59
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 94.29
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 94.19
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 93.49
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 93.22
4gmo_A 684 Putative uncharacterized protein; ARM, heat, solen 93.17
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 93.02
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 93.01
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 92.9
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 92.83
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 92.13
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 92.02
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 90.72
1qgr_A 876 Protein (importin beta subunit); transport recepto 90.43
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 90.32
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 90.18
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 89.78
3nmz_A458 APC variant protein; protein-protein complex, arma 89.25
2vgl_A 621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 88.56
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 88.34
3grl_A 651 General vesicular transport factor P115; vesicle t 87.44
1qgr_A 876 Protein (importin beta subunit); transport recepto 87.22
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 86.72
3grl_A 651 General vesicular transport factor P115; vesicle t 86.44
1xm9_A 457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 86.31
1w63_A 618 Adapter-related protein complex 1 gamma 1 subunit; 86.03
3syx_A130 Sprouty-related, EVH1 domain-containing protein 1; 82.5
2lyd_A134 Decapping protein 1; DCP1, XRN1, transcription-pro 82.21
3nmz_A458 APC variant protein; protein-protein complex, arma 81.94
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 80.51
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 80.47
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3 Back     alignment and structure
Probab=98.90  E-value=3.2e-09  Score=98.38  Aligned_cols=98  Identities=22%  Similarity=0.400  Sum_probs=84.6

Q ss_pred             CceEEEEeC-CCCCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCccccccc--CeEEEecCC-----C-
Q 006478           15 QRVKVYRLN-DDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQE--DTIISWRDP-----E-   85 (643)
Q Consensus        15 ~RVKvY~L~-~~~~W~D~GTG~~s~~~~e~~~~~~l~V~sE~d~~~lL~~~I~~~~~YqrQq--eTlIvW~e~-----~-   85 (643)
                      .|+|||.++ ++++|.++|+|.+..-.........|++|.+.....+|.+.|.++-.|+.+.  +.-++|+-.     + 
T Consensus        27 ~raKL~~~~~~~~~WkerG~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~s~~~~~~~~~d~~d~~~  106 (134)
T 1rrp_B           27 NRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELP  106 (134)
T ss_dssp             EEEEEEEECSSSSCEEEEEEEEEEEEEESSSCCCEEEEECTTTCCEEECCBCCSSCCCBCSTTCTTEEEEEEEECTTSSC
T ss_pred             EEEEEEEEcccCCCcccCcEEEEEEEEECCCCeEEEEEEEcCCCcEEEEeEecCCceEeecCCCCeEEEEEcccccCCCC
Confidence            699999996 4689999999999987766667899999999999999999999999999864  689999732     1 


Q ss_pred             ccccccccccCccchhHHHHHHHHHhh
Q 006478           86 YSTELALSFQEPTGCSYIWDNICNVQR  112 (643)
Q Consensus        86 ~~~dlALSFQe~~GC~~iw~~I~~vQ~  112 (643)
                      ....+|+.|..++.|+++++.|.+.|.
T Consensus       107 k~~~~~irfk~~e~A~~f~~~~~e~~~  133 (134)
T 1rrp_B          107 KPEQLAIRFKTPEEAALFKCKFEEAQS  133 (134)
T ss_dssp             EEEEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred             ceEEEEEEECCHHHHHHHHHHHHHHhh
Confidence            125799999999999999999999874
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3 Back     alignment and structure
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A Back     alignment and structure
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B* Back     alignment and structure
>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B* Back     alignment and structure
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3 Back     alignment and structure
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4 Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A Back     alignment and structure
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4 Back     alignment and structure
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A* Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4 Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4 Back     alignment and structure
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens} Back     alignment and structure
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster} Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 643
d1mkea1114 b.55.1.4 (A:31-144) Actin regulatory protein WASP 4e-20
d1xkea1118 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (H 1e-08
d1egxa_115 b.55.1.4 (A:) Vasodilator-stimulated phosphoprotei 4e-07
d2crfa1137 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (H 8e-04
d1i2ha_145 b.55.1.4 (A:) Homer {Rat (Rattus norvegicus) [TaxI 0.001
d1evha_111 b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId 0.002
>d1mkea1 b.55.1.4 (A:31-144) Actin regulatory protein WASP {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 114 Back     information, alignment and structure

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Enabled/VASP homology 1 domain (EVH1 domain)
domain: Actin regulatory protein WASP
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 84.1 bits (208), Expect = 4e-20
 Identities = 13/112 (11%), Positives = 40/112 (35%), Gaps = 6/112 (5%)

Query: 1   MGAQEKSQANANPMQRVKVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETI 60
           +G +  + ++A     V++Y  + +  W  + +G   +          L + D +D + +
Sbjct: 6   LGKKCVTMSSA----VVQLYAADRNCMWSKKCSGVACLVKDNPQRSYFLRIFDIKDGKLL 61

Query: 61  LLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQEPTGCSYIWDNICNVQR 112
               +  + +Y        ++       ++AL+F            + ++  
Sbjct: 62  WEQELYNNFVYNSPRGYFHTFAGDT--CQVALNFANEEEAKKFRKAVTDLLG 111
>d1xkea1 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d1egxa_ b.55.1.4 (A:) Vasodilator-stimulated phosphoprotein (VASP) {Human (Homo sapiens) [TaxId: 9606]} Length = 115 Back     information, alignment and structure
>d2crfa1 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 137 Back     information, alignment and structure
>d1i2ha_ b.55.1.4 (A:) Homer {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 Back     information, alignment and structure
>d1evha_ b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId: 10090]} Length = 111 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query643
d1mkea1114 Actin regulatory protein WASP {Rat (Rattus norvegi 99.71
d1xkea1118 Ran-binding protein 2 {Human (Homo sapiens) [TaxId 98.96
d1egxa_115 Vasodilator-stimulated phosphoprotein (VASP) {Huma 98.59
d1rrpb_134 Nuclear pore complex protein Nup358 {Human (Homo s 98.13
d1evha_111 Enabled {Mouse (Mus musculus) [TaxId: 10090]} 98.08
d2crfa1137 Ran binding protein 3 {Human (Homo sapiens) [TaxId 97.97
d1k5db_146 Ran-binding protein 1, Ranbp1 {Human (Homo sapiens 97.88
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 97.42
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.4
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 97.23
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 97.21
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 97.09
d1jdha_ 529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 95.17
d1jdha_ 529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 93.82
d1xm9a1 457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 92.77
d1xoda1114 Sprouty-related, EVH1 domain-containing protein 1, 92.68
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 91.99
d1i2ha_145 Homer {Rat (Rattus norvegicus) [TaxId: 10116]} 91.32
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 89.39
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 87.0
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 85.37
>d1mkea1 b.55.1.4 (A:31-144) Actin regulatory protein WASP {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Enabled/VASP homology 1 domain (EVH1 domain)
domain: Actin regulatory protein WASP
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=9e-18  Score=149.66  Aligned_cols=98  Identities=11%  Similarity=0.234  Sum_probs=90.8

Q ss_pred             CceEEEEeCCCCCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCcccccccCeEEEecCCCccccccccc
Q 006478           15 QRVKVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALSF   94 (643)
Q Consensus        15 ~RVKvY~L~~~~~W~D~GTG~~s~~~~e~~~~~~l~V~sE~d~~~lL~~~I~~~~~YqrQqeTlIvW~e~~~~~dlALSF   94 (643)
                      ..||||.+++++.|+++|||+++..+....++.+|.|.++.++..|++++|.++..|++|++|+++|.+.+  ..+||||
T Consensus        16 avv~lY~~~~~~~W~~~~tG~v~~v~d~~~~~~~l~v~d~~~~~vi~e~eI~~~~~Y~k~~~~Fh~~~~~~--~~~GL~F   93 (114)
T d1mkea1          16 AVVQLYAADRNCMWSKKCSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNNFVYNSPRGYFHTFAGDT--CQVALNF   93 (114)
T ss_dssp             EEEEEEEEETTTEEEEEEEEEEEEEEETTTTEEEEEEECSSSCSEEEEEECCSSCCCBCSSSSEEEEECSS--SEEEEEE
T ss_pred             EEEEEEEECCCCeEEECCceEEEEEEECCCCeEEEEEEECCCCeEEEEEEccCCcEEeccCCeEEEEEcCC--ceEEEee
Confidence            46999999888899999999999998777788999999999999999999999999999999999997654  6899999


Q ss_pred             cCccchhHHHHHHHHHhhcc
Q 006478           95 QEPTGCSYIWDNICNVQRNL  114 (643)
Q Consensus        95 Qe~~GC~~iw~~I~~vQ~~~  114 (643)
                      |++++|.++|+.|+++|++.
T Consensus        94 ~~~~eA~~f~~~i~~~~~~~  113 (114)
T d1mkea1          94 ANEEEAKKFRKAVTDLLGRR  113 (114)
T ss_dssp             SSHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999864
>d1xkea1 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1egxa_ b.55.1.4 (A:) Vasodilator-stimulated phosphoprotein (VASP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1evha_ b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2crfa1 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xoda1 b.55.1.4 (A:10-123) Sprouty-related, EVH1 domain-containing protein 1, Spred-1 {Western clawed frog (Xenopus tropicalis) [TaxId: 8364]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1i2ha_ b.55.1.4 (A:) Homer {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure