Citrus Sinensis ID: 006482

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640---
Protein Sequence
MSNQFLSLLPEASQDYDSSNSSKSGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERDSFMSSSSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFRQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccHHHHHHHHcHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHccHHccHHHHcccHHHHHccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHccHHHHHccHHHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHccccccccccccccccEccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccHcccccccccccccccccHHccccccHHccHHHHcccHHccccHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccHHHcccccccHHHcccccHcHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHcccccccccccHHHHHHHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
msnqflsllpeasqdydssnssksgfqgieesqskgndsfpkvptlvnsgpshdfvtkispqnsvstlfqskpsnaialgnghsfhsssegtahlttstggsasevglntpsttnfsdpvsfntgegkpsnsasglaslqstpfkrseysgynfdagnsfnhvpvssatnkftlgkSRASfldslnvprassgtlfeqteperdsfmsssslnsmdvlgsspaqnpsmekettgafsktttsnipsafdylgnptvstsdrgdirrlgsnessienqhgfystkhnEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAenssltdsynQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRkasgsgksidfgktaastvnaststedlaitdttldnsnqdthddaslpridasgstllpesgrLALEGlavniphdqmRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNManenisfrqpdsasthdhtayadegDEVVERVLGWIMKlfpggpsrrrtskll
Flexible Loop (DISEMBL)
MSNQFLSLLPEASQDYDSSNSSKSGFQGIEESqskgndsfpkVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFldslnvprassgtlfeqteperDSFMSSSSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAaenssltdsynqQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASevigleekalrlrsnelklerqlensqseisSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRkasgsgksidfgktaastvnaststedLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFRQPDSASTHDHTAYADEGDEVVERVLGWImklfpggpsrrrtskll
Low Complexity Region (SEG)
MSNQFLSLLPEAsqdydssnssksGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERdsfmsssslnsmdvlgssPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQrsleasralseslaaensslTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENsqseissykkkisslekeRQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKtaastvnaststEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFRQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL
Disordered region (IsUnstruct)
***************************************************************************************************************************************************************************************************************************************************************************************************************************************************************IKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE***************************************************************************************************************************LALEGLAVNIPHDQMRMIHNINALISELALEK*******************************************************************GDEVVERVLGWIMKLF*************
Disordered Region (DISOPRED)
****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************EVVERVLGWIMKLF*************
Disordered Region (DISEMBL)
MSNQFLSLLPE***************************SFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFN*****************STPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFE**************LNSM**********************KTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLE****************************STIEALQEE****************SIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFR***********AYADEGDEVVERVLGWIMKLFPGG**********
Disordered Region (DISPRO)
******************************************VPT****GPSHDFV*K******************IA*************TAHLTTSTGGSASE*****PS*TNFSDPVSFNTGE***********************************************************N*********************************************************IPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSI**************************************************************VNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMA*E***************TAYADEGDEVVERVLGWIMKLFPG***********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNQFLSLLPEASQDYDSSNSSKSGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERDSFMSSSSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYxxxxxxxxxxxxxxxxxxxxxxxxxxxxLEASRALSESLAAENSSLTDSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAKILASEVIGLEEKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQxxxxxxxxxxxxxxxxxxxxxxxxxxxxNMANENISFRQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	643
225433351	804	PREDICTED: uncharacterized protein LOC10	0.972	0.777	0.573	1e-180
356533381	784	PREDICTED: uncharacterized protein LOC10	0.933	0.765	0.529	1e-162
297831252	728	hypothetical protein ARALYDRAFT_898989 [	0.772	0.682	0.554	1e-143
145338880	714	protein BLISTER [Arabidopsis thaliana] g	0.838	0.754	0.520	1e-141
255554298	713	conserved hypothetical protein [Ricinus	0.734	0.661	0.555	1e-135
125528809	760	hypothetical protein OsI_04881 [Oryza sa	0.754	0.638	0.477	1e-109
115441767	760	Os01g0911800 [Oryza sativa Japonica Grou	0.751	0.635	0.483	1e-109
242055353	770	hypothetical protein SORBIDRAFT_03g04350	0.685	0.572	0.487	1e-109
414879058	748	TPA: hypothetical protein ZEAMMB73_30879	0.709	0.609	0.482	1e-108
147843847	443	hypothetical protein VITISV_004427 [Viti	0.455	0.661	0.679	1e-104

>gi|225433351|ref|XP_002282738.1| PREDICTED: uncharacterized protein LOC100251145 [Vitis vinifera] gi|297741880|emb|CBI33315.3| unnamed protein product [Vitis vinifera]

 Score =  637 bits (1642), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 369/643 (57%), Positives = 454/643 (70%), Gaps = 18/643 (2%)

Query: 9   LPEASQDYDSSNSSKSGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTL 68
            P+A +D DSS SS+S F  +EE+Q K + S  K  T+++ G S   +   S +NS    
Sbjct: 172 FPQAIRDTDSS-SSQSNFHRMEETQQKDHKSSLKSFTVIDPGISQVPLANASSENS---- 226

Query: 69  FQSKPSNAIALGN-GHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEG 127
                 NAI   N G++   SS  + H  T+   SA  VG + P + +F+  +  N  + 
Sbjct: 227 -----GNAILPNNYGYANMKSSADSVHPITTAKQSAFGVGQDVPGSVDFNVHMLSNKEDK 281

Query: 128 KPSNSASGLASLQ-STPFK-RSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSL 185
           K S+S   L S   ++P    S  + + FD   S NH+P+ S T +    +SR SFLDS+
Sbjct: 282 KLSSSFGYLPSTHGASPLASESSSTSFAFDVRGSSNHLPLYSVTPETNARRSRPSFLDSI 341

Query: 186 NVPRASSGTLFEQTEPERDS--FMSSSSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSN 243
           NVPR  S +    TEP +    F SSS +NSMDVLGSS +     E E    FSK   SN
Sbjct: 342 NVPRVPSASHLPLTEPGKAEPFFSSSSKVNSMDVLGSSASTKSLAESENFEPFSKAGNSN 401

Query: 244 IPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEK 303
            PS FD+  N +VS  +R ++ R G +++S+E +  F+S K NEDFAALEQHIEDLTQEK
Sbjct: 402 GPSLFDHSINSSVSVGNRVEMLRHGLDQNSLERKFEFHSQKQNEDFAALEQHIEDLTQEK 461

Query: 304 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 363
           F+LQR+LEASRAL+ESLAAENSSLTDSYNQQ SVVNQLKS+MEKLQEEIK QLV+LESF+
Sbjct: 462 FSLQRALEASRALAESLAAENSSLTDSYNQQGSVVNQLKSDMEKLQEEIKAQLVDLESFK 521

Query: 364 NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 423
            EYAN +LECNAADERAK+LASEVIGLEEKALRLRS+ELKLERQLENS +EISS+KKK+S
Sbjct: 522 IEYANAQLECNAADERAKLLASEVIGLEEKALRLRSSELKLERQLENSNAEISSFKKKVS 581

Query: 424 SLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITD 483
           SLEKERQD Q TI+ALQEEKK++Q K+RKAS +GKSID  K+     + STST+DL   D
Sbjct: 582 SLEKERQDLQLTIDALQEEKKLLQKKVRKASANGKSIDASKSPTDRKDVSTSTDDLVNED 641

Query: 484 TTL---DNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALI 540
                 + S+ +  + AS+   + S   LLP+ G++  E  +VNIP DQMRMI NINALI
Sbjct: 642 NACMIPETSSLEMLNSASVQANELSSFPLLPDGGQMNFEVSSVNIPADQMRMIQNINALI 701

Query: 541 SELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFRQP 600
           SELALEKEEL+QAL +E +QSSKLKDLN ELSRKLE QTQRLELLT+Q+MANE I  RQP
Sbjct: 702 SELALEKEELMQALVTESSQSSKLKDLNKELSRKLEVQTQRLELLTSQSMANEVIQARQP 761

Query: 601 DSASTHDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 643
           DS   HD+ AYADEGDEVVERVLGWIM+LFPGGP++RRTSKLL
Sbjct: 762 DSRIMHDNAAYADEGDEVVERVLGWIMRLFPGGPAKRRTSKLL 804

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533381|ref|XP_003535243.1| PREDICTED: uncharacterized protein LOC100817279 [Glycine max]

 Score =  580 bits (1494), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 341/644 (52%), Positives = 447/644 (69%), Gaps = 44/644 (6%)

Query: 3   NQFLSLLPEASQDYDSSNSSKSGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQ 62
           +Q + L  + SQ++D  N + S   G+ ++QS  ++S  K   + ++  S+ F +KI+PQ
Sbjct: 182 HQSVPLCSQESQEFD--NHATSSLHGVNDNQSNKSNSSLKDYAVTDNFSSY-FPSKITPQ 238

Query: 63  NSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSF 122
           NSV T  Q KP+N+    +G+S                 S    G +   ++ F + V+ 
Sbjct: 239 NSVDTPLQIKPTNSSTFDSGYSH----------------SLLSGGFSDSFSSKFRETVT- 281

Query: 123 NTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFL 182
                   +S + L SL      + + +GY  +A NS NH P+ S   + +  +SR SFL
Sbjct: 282 --------SSDNNLPSLHGATMPKYDSTGY--EARNSSNHTPIHSLPTESSSRRSRPSFL 331

Query: 183 DSLNVPRASSGTLFEQTEPERDSFMSS---SSLNSMDVLGSSPAQNPSMEKETTGAFSKT 239
           DSLNV R S G+ F Q+E  +DS MS+   SS N  D+ GS+    PS E +    FS  
Sbjct: 332 DSLNVTRPSLGSPFHQSE--QDSLMSNYLESSSN--DISGSAYFHKPSEETKIMPLFSNF 387

Query: 240 TTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDL 299
           TT+N+ S+ + L  P+V  +D        + ES +E +H +YS+  NEDF ALEQHIEDL
Sbjct: 388 TTANVHSSLEPLTTPSVVDNDNQGALITSTRESGMEKKHDYYSSSQNEDFTALEQHIEDL 447

Query: 300 TQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL 359
           T+EKF+LQR+LEASR L+ESLA ENS+LTD+YNQQRSVVNQLKS+ME L E+IK +LVEL
Sbjct: 448 TKEKFSLQRALEASRTLAESLATENSTLTDNYNQQRSVVNQLKSDMENLHEDIKARLVEL 507

Query: 360 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYK 419
           E+ ++EY N +LECNAADERAK+LASEVIGLEEKALRLRS+ELKLE+QLEN++ EISSY+
Sbjct: 508 EAIKSEYTNAQLECNAADERAKLLASEVIGLEEKALRLRSSELKLEKQLENAKEEISSYR 567

Query: 420 KKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDL 479
           KK+SSL+K+R D QSTIEALQEEKKM+ SKLRKASG GKSI+      S  + STSTEDL
Sbjct: 568 KKMSSLDKDRHDLQSTIEALQEEKKMLLSKLRKASGIGKSIE---NQTSKRDVSTSTEDL 624

Query: 480 AITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINAL 539
           A  D   ++SN + +D+A+    +AS  + + E+   +     VNIPHDQMRMI NINAL
Sbjct: 625 ASEDPASNSSNPEINDNAA----EASSLSSVTETRHSSFGVSPVNIPHDQMRMIENINAL 680

Query: 540 ISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFRQ 599
           ISELALEKEEL++AL+SE ++ S++K++N ELSRKLE QTQRLELLTAQ+M NENIS +Q
Sbjct: 681 ISELALEKEELIKALTSESSECSRMKEINMELSRKLEVQTQRLELLTAQSMVNENISAKQ 740

Query: 600 PDSASTHDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 643
           PDS + +++T+YADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL
Sbjct: 741 PDSRAMYENTSYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 784

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831252|ref|XP_002883508.1| hypothetical protein ARALYDRAFT_898989 [Arabidopsis lyrata subsp. lyrata] gi|297329348|gb|EFH59767.1| hypothetical protein ARALYDRAFT_898989 [Arabidopsis lyrata subsp. lyrata]

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 288/519 (55%), Positives = 378/519 (72%), Gaps = 22/519 (4%)

Query: 128 KPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNV 187
           KP+ S+S L     T  + SE S ++    N  +  P++SA ++  + +SR SFLDSLN+
Sbjct: 229 KPTLSSSYLFRSPDTSSRPSESSDFSV---NFTSSSPLNSAKSEAIVKRSRPSFLDSLNI 285

Query: 188 PRASSGTLFEQTEPERDSFMSSSS-LNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPS 246
            RA   T ++  E + D   SS S L   D  G S     S  +++ G    +  S+ P+
Sbjct: 286 SRAPE-TQYQHPEIKADLVTSSGSQLTGSDGFGPSYI---SGRRDSNGPSLTSGASDSPN 341

Query: 247 AFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFAL 306
            F+   +P    ++             +     F   K N+DF ALEQHIEDLTQEKF+L
Sbjct: 342 PFEKFRSPLYPAAN-----------GVMPGFTDFSMPKQNDDFTALEQHIEDLTQEKFSL 390

Query: 307 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 366
           QR L+ASRAL+ESLA+ENSS+TD+YNQQR +VNQLK +ME+L ++I+VQ+ ELES R EY
Sbjct: 391 QRDLDASRALAESLASENSSMTDTYNQQRGLVNQLKDDMERLYQQIQVQMGELESVRIEY 450

Query: 367 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLE 426
           AN +LECNAADER++ILASEVI LE+KALRLRSNELKLER+LEN+Q+E+ SYKKK+ SLE
Sbjct: 451 ANAQLECNAADERSQILASEVISLEDKALRLRSNELKLERELENAQAEMLSYKKKLQSLE 510

Query: 427 KERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTL 486
           K+RQD QSTI+ALQEEKK++Q+ ++KAS  GKS D  KT+ S  NASTSTE LAI+DTT 
Sbjct: 511 KDRQDLQSTIKALQEEKKVLQTMVQKASSGGKSTDLSKTSTSRKNASTSTEGLAISDTTP 570

Query: 487 DNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALE 546
            +SNQ+T D A+L   D+S + ++PE+G+L LEG ++++P DQMR+IHNIN LI+ELA+E
Sbjct: 571 KSSNQET-DSATLLESDSSNTAIIPETGQLTLEGFSLSVPADQMRVIHNINTLIAELAIE 629

Query: 547 KEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENIS--FRQPDSAS 604
           KEELVQALSSEL++S+++++LN ELSRKLE QT+RLEL+TAQ MA +N+S   +Q DS  
Sbjct: 630 KEELVQALSSELSRSAQVQELNKELSRKLEAQTKRLELVTAQKMAIDNVSPEKQQLDSHV 689

Query: 605 THDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 643
             + T  ADEGDEVVERVLGWIMK+FPGGPS+RRTSKLL
Sbjct: 690 VQERTPIADEGDEVVERVLGWIMKMFPGGPSKRRTSKLL 728

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145338880|ref|NP_189040.3| protein BLISTER [Arabidopsis thaliana] gi|9294667|dbj|BAB03016.1| unnamed protein product [Arabidopsis thaliana] gi|332643320|gb|AEE76841.1| protein BLISTER [Arabidopsis thaliana]

 Score =  510 bits (1313), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 295/567 (52%), Positives = 393/567 (69%), Gaps = 28/567 (4%)

Query: 81  NGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQ 140
           +G    SS + +   TT   GS  EV  N   +      +       KP+ S+S L +  
Sbjct: 172 HGSGLTSSRKDSLQPTTRMAGSFDEVAKNQQGSGELGGSIV-----QKPTLSSSYLFNSP 226

Query: 141 STPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTE 200
            T  + SE S ++ +  +S    P++SA ++ T+ +SR SFLDSLN+ RA   T ++  E
Sbjct: 227 DTSSRPSEPSDFSVNITSS---SPLNSAKSEATVKRSRPSFLDSLNISRAPE-TQYQHPE 282

Query: 201 PERDSFMSSSS-LNSMDVLGSSPAQNPSMEKETTGAFSKTT-TSNIPSAFDYLGNPTVST 258
            + D   SS S L+  D  G S     S  +++ G  S T+  S+ P+ F+   +     
Sbjct: 283 IQADLVTSSGSQLSGSDGFGPSYI---SGRRDSNGPSSLTSGASDYPNPFEKFRSSLYPA 339

Query: 259 SDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSE 318
           ++             +     F   K N+DF ALEQHIEDLTQEKF+LQR L+ASRAL+E
Sbjct: 340 AN-----------GVMPGFTDFSMPKQNDDFTALEQHIEDLTQEKFSLQRDLDASRALAE 388

Query: 319 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADE 378
           SLA+ENSS+TD+YNQQR +VNQLK +ME+L ++I+ Q+ ELES R EYAN +LECNAADE
Sbjct: 389 SLASENSSMTDTYNQQRGLVNQLKDDMERLYQQIQAQMGELESVRVEYANAQLECNAADE 448

Query: 379 RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA 438
           R++ILASEVI LE+KALRLRSNELKLER+LE +Q+E+ SYKKK+ SLEK+RQD QSTI+A
Sbjct: 449 RSQILASEVISLEDKALRLRSNELKLERELEKAQTEMLSYKKKLQSLEKDRQDLQSTIKA 508

Query: 439 LQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDAS 498
           LQEEKK++Q+ ++KAS  GKS D  K + S  N STSTE LAI+DTT ++SNQ+T D  +
Sbjct: 509 LQEEKKVLQTMVQKASSGGKSTDLSKNSTSRKNVSTSTEGLAISDTTPESSNQET-DSTT 567

Query: 499 LPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSEL 558
           L   D+S + ++PE+ +L LEG ++++P DQMR+IHNIN LI+ELA+EKEELVQALSSEL
Sbjct: 568 LLESDSSNTAIIPETRQLTLEGFSLSVPADQMRVIHNINTLIAELAIEKEELVQALSSEL 627

Query: 559 AQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENIS--FRQPDSASTHDHTAYADEGD 616
           ++S+ +++LN ELSRKLE QTQRLEL+TAQ MA +N+S   +QPD+    + T  ADEGD
Sbjct: 628 SRSAHVQELNKELSRKLEAQTQRLELVTAQKMAIDNVSPEKQQPDTHVVQERTPIADEGD 687

Query: 617 EVVERVLGWIMKLFPGGPSRRRTSKLL 643
           EVVERVLGWIMK+FPGGPS+RRTSKLL
Sbjct: 688 EVVERVLGWIMKMFPGGPSKRRTSKLL 714

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554298|ref|XP_002518189.1| conserved hypothetical protein [Ricinus communis] gi|223542785|gb|EEF44322.1| conserved hypothetical protein [Ricinus communis]

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 289/520 (55%), Positives = 348/520 (66%), Gaps = 48/520 (9%)

Query: 125 GEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDS 184
           GE   S S  G  S      + S+  GY+ D+ +S NH  + S T++    +SR SFLDS
Sbjct: 241 GEANFSISLGGFPSAYGKSMQTSDTIGYDSDSKSSSNHTQLLSGTSEPNSRRSRPSFLDS 300

Query: 185 LNVPRASSGTLFEQTEPERDSFMSSSSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNI 244
           LNV RASSGT F+ TE +++SFM   S N M  L SS  QN S+E +T G          
Sbjct: 301 LNVTRASSGTSFQPTELQKESFMPGKS-NGMGALDSSTFQNLSVEAQTLG---------- 349

Query: 245 PSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKF 304
                   +P   ++    +     +E+S   +H FYS+KHNEDFAALEQHIEDLTQEKF
Sbjct: 350 -------HHPMTFSASSNSVEMSNIDENSWGRKHEFYSSKHNEDFAALEQHIEDLTQEKF 402

Query: 305 ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN 364
           +LQR+LE+SRAL+ESLAAENSSLTD+YNQQRS VNQLKS+MEKLQEEIKV LVELES + 
Sbjct: 403 SLQRALESSRALAESLAAENSSLTDNYNQQRSAVNQLKSDMEKLQEEIKVHLVELESVKM 462

Query: 365 EYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS- 423
           EY N +LEC+A+DERAKILASEVIGLEEK        + L           S++  ++S 
Sbjct: 463 EYGNAKLECDASDERAKILASEVIGLEEKVFNFF---VML----------FSTFTTQVSL 509

Query: 424 SLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITD 483
            L      F  T      EKK++QSKLRKAS SGKS+D  + + +  + STSTED     
Sbjct: 510 VLCFNNCQFYDT------EKKLLQSKLRKASASGKSLDISQNSGNKKDMSTSTED----- 558

Query: 484 TTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISEL 543
             LD  N++T D  +L   D     + PE+G+  LE   V+IP DQMR+I NIN LISEL
Sbjct: 559 --LDPCNEETVDTTALIGNDI---PIHPENGQSNLEVSTVHIPADQMRLIENINTLISEL 613

Query: 544 ALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFRQPDSA 603
           ALEKEEL+QALSSE +Q S+LKDLNNELSRKLE QTQRLELLTAQ+MANENI  R PDS 
Sbjct: 614 ALEKEELMQALSSESSQCSRLKDLNNELSRKLEAQTQRLELLTAQSMANENIQARLPDSH 673

Query: 604 STHDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 643
           +  + T YADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL
Sbjct: 674 AMQETTTYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 713

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125528809|gb|EAY76923.1| hypothetical protein OsI_04881 [Oryza sativa Indica Group]

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 259/542 (47%), Positives = 340/542 (62%), Gaps = 57/542 (10%)

Query: 128 KPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVS--------SATNKFTLGKSRA 179
           K S+ A GLA   S    R   S +N ++ N+ N  PV         S+    T  +SR 
Sbjct: 250 KDSSQADGLAYASS----REYGSAFN-NSWNTSNSTPVCFDKQDPFMSSGYPTTYNRSRP 304

Query: 180 SFLDSLNVPRASSGTLFEQTEPERDS--FMSSSSLNSM------------DVLGSSPAQN 225
           SFLDS+ V RA + T     EP + S  F +S+S +S             DV GS  +  
Sbjct: 305 SFLDSIGVQRAPT-TEVPYVEPAKASKPFGNSNSESSFFQPPNQQSAGSNDVDGSLKSGR 363

Query: 226 PSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKH 285
                E     +   T + PS                D R L  +    +N   F     
Sbjct: 364 QEYNNEKGSYGNSIRTDSFPSK---------------DERNLHHSTQMFQN---FTIPGK 405

Query: 286 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 345
           ++DFAALEQ IEDLT+EKFALQR+LE S+ L+++LA +NS+LTD +NQQ  V++ L S+M
Sbjct: 406 DDDFAALEQLIEDLTKEKFALQRTLEKSQELAQTLATDNSALTDKFNQQAQVISNLTSDM 465

Query: 346 EKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLE 405
           E+LQ EI+ QL+ LES R EYAN +LECNAADERAK+LA+EVI LE+KALRLRS+ELKLE
Sbjct: 466 ERLQNEIQAQLLALESVRTEYANAQLECNAADERAKVLAAEVILLEDKALRLRSSELKLE 525

Query: 406 RQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKT 465
           +++E   SEISSY++K+SSLEKERQ  QST+EALQEEKK++ SKLR  S + K     K 
Sbjct: 526 KEIEGLSSEISSYRRKVSSLEKERQHLQSTVEALQEEKKLLHSKLRNTSVTEKVNIIEKP 585

Query: 466 AASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLA----LEGL 521
           +A   +AST+TEDL   +++   +     D          G T +  S  +A    LE +
Sbjct: 586 SADKRDASTATEDLDTGESSSSETLTSAIDTVE------DGETSVSRSNNVADFTYLEEV 639

Query: 522 AVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQR 581
           + +IPHDQ+RMI NIN+L+SELA+E+EEL++AL  E +  SKLK+LN +L++KLE QT R
Sbjct: 640 SSSIPHDQLRMIDNINSLMSELAVEREELLRALRIESSNCSKLKELNKDLTQKLEIQTHR 699

Query: 582 LELLTAQNMANENISFRQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSK 641
           LELL++Q MANEN+  +  D+ S +D T YADEGDEVVERVLGWIMKLFPGGP +RRTSK
Sbjct: 700 LELLSSQRMANENVLPKPIDTRSINDATMYADEGDEVVERVLGWIMKLFPGGP-KRRTSK 758

Query: 642 LL 643
           LL
Sbjct: 759 LL 760

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115441767|ref|NP_001045163.1| Os01g0911800 [Oryza sativa Japonica Group] gi|20161363|dbj|BAB90287.1| heavy meromyosin-like [Oryza sativa Japonica Group] gi|113534694|dbj|BAF07077.1| Os01g0911800 [Oryza sativa Japonica Group] gi|125573067|gb|EAZ14582.1| hypothetical protein OsJ_04505 [Oryza sativa Japonica Group]

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 263/544 (48%), Positives = 345/544 (63%), Gaps = 61/544 (11%)

Query: 128 KPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVS--------SATNKFTLGKSRA 179
           K S+ A GLA   S    R   S +N ++ N+ N  PV         S+    T  +SR 
Sbjct: 250 KDSSQADGLAYASS----REYGSAFN-NSWNTSNSTPVCFDKQDPFMSSGYPTTYNRSRP 304

Query: 180 SFLDSLNVPRASSGTLFEQTEPERDS--FMSSSSLNSM------------DVLGS--SPA 223
           SFLDS+ V RA + T     EP + S  F +S+S +S             DV GS  S  
Sbjct: 305 SFLDSIGVQRAPT-TEVPYVEPAKASKPFGNSNSESSFFQPPNQQSAGSNDVDGSLKSGR 363

Query: 224 QNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYST 283
           Q  + EK + G  +   T + PS                D R L  +    +N   F   
Sbjct: 364 QEYNNEKGSYG--NSIRTDSFPSK---------------DERNLHHSTQMFQN---FTIP 403

Query: 284 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 343
             ++DFAALEQ IEDLT+EKFALQR+LE S+ L+++LA +NS+LTD +NQQ  V++ L S
Sbjct: 404 GKDDDFAALEQLIEDLTKEKFALQRTLEKSQELAQTLATDNSALTDKFNQQAQVISNLTS 463

Query: 344 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 403
           +ME+LQ EI+ QL+ LES R EYAN +LECNAADERAK+LA+EVI LE+KALRLRS+ELK
Sbjct: 464 DMERLQNEIQAQLLALESVRTEYANAQLECNAADERAKVLAAEVILLEDKALRLRSSELK 523

Query: 404 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFG 463
           LE+++E   SEISSY++K+SSLEKERQ  QST+EALQEEKK++ SKLR  S + K     
Sbjct: 524 LEKEIEGLSSEISSYRRKVSSLEKERQHLQSTVEALQEEKKLLHSKLRNTSVTEKVNIIE 583

Query: 464 KTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLA----LE 519
           K +A   +AST+TEDL   +++   +     D          G T +  S  +A    LE
Sbjct: 584 KPSADKRDASTATEDLDTGESSSSETLTSAIDTVE------DGETSVSRSNNVADFTYLE 637

Query: 520 GLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQT 579
            ++ +IPHDQ+RMI NIN+L+SELA+E+EEL++AL  E +  SKLK+LN +L++KLE QT
Sbjct: 638 EVSSSIPHDQLRMIDNINSLMSELAVEREELLRALRIESSNCSKLKELNKDLTQKLEIQT 697

Query: 580 QRLELLTAQNMANENISFRQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRT 639
            RLELL++Q MANEN+  +  D+ S +D T YADEGDEVVERVLGWIMKLFPGGP +RRT
Sbjct: 698 HRLELLSSQRMANENVLPKPIDTRSINDATLYADEGDEVVERVLGWIMKLFPGGP-KRRT 756

Query: 640 SKLL 643
           SKLL
Sbjct: 757 SKLL 760

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242055353|ref|XP_002456822.1| hypothetical protein SORBIDRAFT_03g043500 [Sorghum bicolor] gi|241928797|gb|EES01942.1| hypothetical protein SORBIDRAFT_03g043500 [Sorghum bicolor]

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 250/513 (48%), Positives = 331/513 (64%), Gaps = 72/513 (14%)

Query: 164 PVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERDSFMSS-------------- 209
           P  S+    T  +SR SFLDS+ V RA   T     EP + + +SS              
Sbjct: 297 PFLSSGYPTTYTRSRPSFLDSIGVQRAPPTTQASYREPAKTNQLSSNLNYQSPFLQQSNQ 356

Query: 210 --SSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRL 267
             +  N+ D+  +S +Q  S EK + G+      SN P   D+                L
Sbjct: 357 QSTGSNATDISFASESQKYSHEKGSYGS------SNPP---DF---------------SL 392

Query: 268 GSNESSIENQHG------FYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLA 321
              E SI  QHG      F +   ++DFAALEQ IEDLT+EKF+LQR+++ S+ L+E+LA
Sbjct: 393 PKEERSI--QHGNQTFQNFTTHGKDDDFAALEQLIEDLTKEKFSLQRTVQKSQELAETLA 450

Query: 322 AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 381
            +NS+LTD +NQQ  +++QL S+ME+LQEEI+ QL+ LES R EYAN +LECNAADERAK
Sbjct: 451 TDNSALTDKFNQQAHIISQLTSDMERLQEEIQAQLLALESVRTEYANAQLECNAADERAK 510

Query: 382 ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE 441
           +LA+EVI LE+KALRLRS+ELKLE+++E   SEISSY++K+SSLEKERQ  QST+EALQE
Sbjct: 511 VLAAEVILLEDKALRLRSSELKLEKEIEGLHSEISSYRRKVSSLEKERQHLQSTVEALQE 570

Query: 442 EKKMMQSKLRKASGSGKSIDFGKTAASTV--------NASTSTEDL---AITDTTLDNSN 490
           EKK++ SKLR       +I   + A +TV        +AST+TEDL    ++ +    S 
Sbjct: 571 EKKLLYSKLR-------NIPMNERATTTVEKPSVEKRDASTATEDLDTGELSSSETLTST 623

Query: 491 QDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEEL 550
            DT +DA      ++  +  P     +LE ++ +IP DQ+RMI NIN+L+SELA+E+EEL
Sbjct: 624 VDTLEDAGTSVRRSNIMSDFP-----SLEEVSSSIPDDQLRMIDNINSLMSELAVEREEL 678

Query: 551 VQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFRQPDSASTHDHTA 610
           ++AL  E +  SKLKDLN +L++KLE QT RLELLT+Q MANEN   +  D+ S +D   
Sbjct: 679 LRALRIESSNCSKLKDLNKDLTQKLEIQTHRLELLTSQRMANENALAKPIDTRSINDAAI 738

Query: 611 YADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 643
           YADEGDEVVERVLGWIMKLFPGGP +RRTSKLL
Sbjct: 739 YADEGDEVVERVLGWIMKLFPGGP-KRRTSKLL 770

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414879058|tpg|DAA56189.1| TPA: hypothetical protein ZEAMMB73_308793 [Zea mays] gi|414879059|tpg|DAA56190.1| TPA: hypothetical protein ZEAMMB73_308793 [Zea mays] gi|414879060|tpg|DAA56191.1| TPA: hypothetical protein ZEAMMB73_308793 [Zea mays]

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 250/518 (48%), Positives = 331/518 (63%), Gaps = 62/518 (11%)

Query: 151 GYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPER------- 203
           G NF+  +     P  S+    T  +SR SFLDS+ V R    T     EP +       
Sbjct: 268 GVNFERQD-----PFLSSGYPTTYTRSRPSFLDSIGVQRVPPTTQASYREPAKANQLSHN 322

Query: 204 ----DSFMSSS-----SLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNP 254
                SF+  S     S N+ D+  +S +Q  S EK + G      +SN P   D+    
Sbjct: 323 SNYQSSFVKQSNQQPTSSNAADISFASESQEYSHEKGSYG------SSNHP---DF---- 369

Query: 255 TVSTSDRGDIRRLGSNESSIENQHG------FYSTKHNEDFAALEQHIEDLTQEKFALQR 308
                       L   E SI  QHG      F +   ++DFA LEQ IEDLT+EKF+LQR
Sbjct: 370 -----------SLPKEERSI--QHGKQTFQNFATHGKDDDFATLEQLIEDLTKEKFSLQR 416

Query: 309 SLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 368
           SL+ S+ L+E+LA +NS+LTD +NQQ  V++QL S+ME+LQEEI+ QL+ LES R EYAN
Sbjct: 417 SLQKSQELAETLATDNSALTDKFNQQAHVISQLTSDMERLQEEIQAQLLALESVRTEYAN 476

Query: 369 VRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKE 428
            +LEC+AADERAK+LA+EVI LE+KALRLRS+ELKLE+++E   SEIS+Y++K+SSLEKE
Sbjct: 477 AQLECSAADERAKVLAAEVILLEDKALRLRSSELKLEKEVEGLHSEISAYRRKVSSLEKE 536

Query: 429 RQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDL---AITDTT 485
           RQ  QST+EALQEEKK++ SKLR    + ++    K +    +AST TEDL    I+ + 
Sbjct: 537 RQHLQSTVEALQEEKKLLYSKLRNIPVNERATTVEKPSVDKKDASTVTEDLDTGEISSSE 596

Query: 486 LDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELAL 545
              S  D  +DA    + ++  +  P S     E ++ +IP DQ+RMI NIN+L+SELA+
Sbjct: 597 TLTSTVDILEDAGTSVLRSNIVSDFPSS-----EQVSSSIPDDQLRMIDNINSLMSELAV 651

Query: 546 EKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFRQPDSAST 605
           E+EEL++AL  E +  SKLK+LN +L++KLE QTQRLELLT+Q MANEN   +  D+   
Sbjct: 652 EREELLRALRIESSNCSKLKELNKDLTQKLEVQTQRLELLTSQRMANENALAKPIDTRPI 711

Query: 606 HDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 643
           ++ T YADEGDEVVERVLGWIMKLFPGGP +RRTSKLL
Sbjct: 712 NEATMYADEGDEVVERVLGWIMKLFPGGP-KRRTSKLL 748

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147843847|emb|CAN79450.1| hypothetical protein VITISV_004427 [Vitis vinifera]

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/296 (67%), Positives = 239/296 (80%), Gaps = 3/296 (1%)

Query: 351 EIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLEN 410
           E +  +V+LESF+ EYAN +LECNAADERAK+LASEVIGLEEKALRLRS+ELKLERQLEN
Sbjct: 148 EKRCLMVDLESFKIEYANAQLECNAADERAKLLASEVIGLEEKALRLRSSELKLERQLEN 207

Query: 411 SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTV 470
           + +EISS+KKK+SSLEKERQD Q TI+ALQEEKK++Q K+RKAS +GKSID  K+     
Sbjct: 208 TNAEISSFKKKVSSLEKERQDLQLTIDALQEEKKLLQKKVRKASANGKSIDASKSPTDRK 267

Query: 471 NASTSTEDLAITDTTL---DNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPH 527
           + STST+DL   D      + S+ +  + AS+   + S   LLP+ G++  E  +VNIP 
Sbjct: 268 DVSTSTDDLVNEDNACMIPETSSLEMLNSASVQANELSSFPLLPDGGQMNFEVSSVNIPA 327

Query: 528 DQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTA 587
           DQMRMI NINALISELALEKEEL+QAL +E +QSSKLKDLN ELSRKLE QTQRLELLT+
Sbjct: 328 DQMRMIQNINALISELALEKEELMQALVTESSQSSKLKDLNKELSRKLEVQTQRLELLTS 387

Query: 588 QNMANENISFRQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 643
           Q+MANE I  RQPDS   HD+ AYADEGDEVVERVLGWIM+LFPGGP++RRTSKLL
Sbjct: 388 QSMANEVIQARQPDSRIMHDNAAYADEGDEVVERVLGWIMRLFPGGPAKRRTSKLL 443

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	643
TAIR|locus:2076071	714	BLI "BLISTER" [Arabidopsis tha	0.897	0.808	0.437	3.8e-110
DICTYBASE|DDB_G0271670	374	DDB_G0271670 [Dictyostelium di	0.418	0.719	0.174	0.0001
UNIPROTKB|O18515	534	O18515 "Nucleoporin p62" [Hydr	0.314	0.378	0.221	0.0002
CGD|CAL0006203	768	orf19.4906 [Candida albicans (	0.376	0.315	0.247	0.00052
UNIPROTKB|Q5APQ2	768	CaO19.4906 "Putative uncharact	0.376	0.315	0.247	0.00052
UNIPROTKB|I3LRD3	2501	CENPE "Uncharacterized protein	0.421	0.108	0.224	0.0007
DICTYBASE|DDB_G0271334	1505	DDB_G0271334 "dilute domain-co	0.186	0.079	0.251	0.00074

TAIR|locus:2076071 BLI "BLISTER" [Arabidopsis thaliana (taxid:3702)]

 Score = 1088 (388.1 bits), Expect = 3.8e-110, P = 3.8e-110
 Identities = 266/608 (43%), Positives = 359/608 (59%)

Query:    47 VNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEV 106
             VN+ P     + I  Q+S S    S      +L +G S     +G  H +  T      +
Sbjct:   127 VNTRPEVVPYSNIDKQSSESFDRASTLRETASLFSGTSMQM--DGFIHGSGLTSSRKDSL 184

Query:   107 GLNTPSTTNFSDPVSFNTGEG--------KPSNSASGLASLQSTPFKRSEYSGYNFDAGN 158
                T    +F +      G G        KP+ S+S L +   T  + SE S ++ +  +
Sbjct:   185 QPTTRMAGSFDEVAKNQQGSGELGGSIVQKPTLSSSYLFNSPDTSSRPSEPSDFSVNITS 244

Query:   159 SFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERXXXXXXXXXXXXXXX 218
             S    P++SA ++ T+ +SR SFLDSLN+ RA   T ++   PE                
Sbjct:   245 SS---PLNSAKSEATVKRSRPSFLDSLNISRAPE-TQYQH--PEIQADLVTSSGSQLSGS 298

Query:   219 XXXPAQNPSMEKETTGAFSKTT-TSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQ 277
                     S  +++ G  S T+  S+ P+ F+   +     ++ G +   G  + S+  Q
Sbjct:   299 DGFGPSYISGRRDSNGPSSLTSGASDYPNPFEKFRSSLYPAAN-GVMP--GFTDFSMPKQ 355

Query:   278 HGFYSTKHNEDFAALEQHIEDLTQEKFALQXXXXXXXXXXXXXXXXXXXXTDSYNQQRSV 337
                     N+DF ALEQHIEDLTQEKF+LQ                    TD+YNQQR +
Sbjct:   356 --------NDDFTALEQHIEDLTQEKFSLQRDLDASRALAESLASENSSMTDTYNQQRGL 407

Query:   338 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 397
             VNQLK +ME+L ++I+ Q+ ELES R EYAN +LECNAADER++ILASEVI LE+KALRL
Sbjct:   408 VNQLKDDMERLYQQIQAQMGELESVRVEYANAQLECNAADERSQILASEVISLEDKALRL 467

Query:   398 RSNELKLERQLENXXXXXXXXXXXXXXXXXXRQDFQSTIEALQEEKKMMQSKLRKASGSG 457
             RSNELKLER+LE                   RQD QSTI+ALQEEKK++Q+ ++KAS  G
Sbjct:   468 RSNELKLERELEKAQTEMLSYKKKLQSLEKDRQDLQSTIKALQEEKKVLQTMVQKASSGG 527

Query:   458 KSIDFGKXXXXXXXXXXXXEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLA 517
             KS D  K            E LAI+DTT ++SNQ+T D  +L   D+S + ++PE+ +L 
Sbjct:   528 KSTDLSKNSTSRKNVSTSTEGLAISDTTPESSNQET-DSTTLLESDSSNTAIIPETRQLT 586

Query:   518 LEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEH 577
             LEG ++++P DQMR+IHNIN LI+ELA+EKEELVQALSSEL++S+ +++LN ELSRKLE 
Sbjct:   587 LEGFSLSVPADQMRVIHNINTLIAELAIEKEELVQALSSELSRSAHVQELNKELSRKLEA 646

Query:   578 QTQRLELLTAQNMANENIS--FRQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGGPS 635
             QTQRLEL+TAQ MA +N+S   +QPD+    + T  ADEGDEVVERVLGWIMK+FPGGPS
Sbjct:   647 QTQRLELVTAQKMAIDNVSPEKQQPDTHVVQERTPIADEGDEVVERVLGWIMKMFPGGPS 706

Query:   636 RRRTSKLL 643
             +RRTSKLL
Sbjct:   707 KRRTSKLL 714

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0009908 "flower development" evidence=IMP

GO:0009965 "leaf morphogenesis" evidence=IGI

GO:0010091 "trichome branching" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0048826 "cotyledon morphogenesis" evidence=IMP

GO:0051781 "positive regulation of cell division" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

DICTYBASE|DDB_G0271670 DDB_G0271670 [Dictyostelium discoideum (taxid:44689)]

 Score = 125 (49.1 bits), Expect = 0.00010, P = 0.00010
 Identities = 47/269 (17%), Positives = 104/269 (38%)

Query:     5 FLSLLPEAXXXXXXXXXXXXGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNS 64
             FL++L  +                   S S  + S     +  +S  S    +  S  +S
Sbjct:    59 FLNILDTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 118

Query:    65 VSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNT 124
              S+   S  S++ +  +  S  SSS  ++  ++S+  S+S    ++ S+++ S   S ++
Sbjct:   119 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 178

Query:   125 GEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDS 184
                  S+S+S  +S  S+    S  S  +  + +S +    SS+++  +   S +S   S
Sbjct:   179 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 238

Query:   185 LNVPRASSGTLFEQTEPERXXXXXXXXXXXXXXXXXXPAQNPSMEKETTGAFSKTTTSNI 244
              +   +SS +    +                       + + S    ++ + S +++S+ 
Sbjct:   239 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 298

Query:   245 PSAFDYLGNPTVSTSDRGDIRRLGSNESS 273
              S+     + + S+S         S+ SS
Sbjct:   299 SSSSSSSSSSSSSSSSSSSSSSSSSSSSS 327

GO:0005576 "extracellular region" evidence=IEA

UNIPROTKB|O18515 O18515 "Nucleoporin p62" [Hydra vulgaris (taxid:6087)]

 Score = 106 (42.4 bits), Expect = 0.00020, Sum P(3) = 0.00020
 Identities = 49/221 (22%), Positives = 91/221 (41%)

Query:    52 SHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTP 111
             ++ F TK +     +    + P+ + +LG+G +   S    A  +++  G  S  G +  
Sbjct:     2 AYSFGTKPTTSTGFNFSTSATPAVSFSLGSGSTQPFSFTTPASQSSTASGGFSFGGPSVQ 61

Query:   112 STTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSAT-- 169
             ++T+ +    F+ GE KP+ + S L +  S   K+  +SG++F+   +    P S+ T  
Sbjct:    62 TSTSLT---GFSFGESKPAAANSSLGNQPSDASKQPVFSGFSFNTSTA-TIKPTSNITFG 117

Query:   170 NKFTLGKSRASFLDSLNVPRASSGTLFE--QTEPERXXXXXXXXXXXXXXXXXXPAQNPS 227
             +  +   S  +   +  +P +S+G       T+                     PA N  
Sbjct:   118 SNLSANSSFTAISTNAGIPASSAGGFSAPGSTKFSLSTPNSGFSLPALSTGVSLPASNVG 177

Query:   228 --MEKETTG-------AFSKTTTSNIPSAFDYLGNPTVSTS 259
               +   TTG        FS  ++S  P  F++ G P  STS
Sbjct:   178 FGLPASTTGFSLPASTGFSAGSSSQ-PGGFNF-GTPASSTS 216

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0005487 "nucleocytoplasmic transporter activity" evidence=ISS

GO:0006913 "nucleocytoplasmic transport" evidence=ISS

GO:0031453 "positive regulation of heterochromatin assembly" evidence=ISS

GO:0031965 "nuclear membrane" evidence=ISS

GO:0045947 "negative regulation of translational initiation" evidence=ISS

GO:0046832 "negative regulation of RNA export from nucleus" evidence=ISS

GO:0031647 "regulation of protein stability" evidence=ISS

CGD|CAL0006203 orf19.4906 [Candida albicans (taxid:5476)]

 Score = 130 (50.8 bits), Expect = 0.00052, Sum P(2) = 0.00052
 Identities = 64/259 (24%), Positives = 105/259 (40%)

Query:    27 QGIEESQ-SKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSF 85
             Q  ++SQ S+   S  + P+   S  +  FV+      SVS    S  S +       S 
Sbjct:   134 QQSQQSQPSQSPTSTSQAPSSTMSDNNTSFVSPSDTSLSVSATTTSSSSTS------SSS 187

Query:    86 HSSSEGTAHLTTSTGGSASEVGL-NTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPF 144
              SS+  T+ +TTS+  S+S     ++ S+T FS   +  T     S+S++  +S+ ST  
Sbjct:   188 SSSTPSTSDVTTSSSASSSPSSTTSSSSSTAFSSSTT-ETSSSATSSSSTTSSSISSTQS 246

Query:   145 KRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERX 204
               S  S  +F +  + +    SS ++ F+   S +S   S ++   SS   F  T     
Sbjct:   247 NTSSSSNTSFSSSTTASSSFSSSTSSSFS--PSPSSTTSSSSISSTSSS--F--TTSSDT 300

Query:   205 XXXXXXXXXXXXXXXXXPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDI 264
                               + N S    ++   S +TTS+IPS+ +     T ++S   D 
Sbjct:   301 SASSSSSSSVSPSSTTSSSSNFSSSSSSSTITSSSTTSSIPSSSEVSSTSTSASSSSSDS 360

Query:   265 RRLGSNESSIENQHGFYST 283
                 S  SS E      ST
Sbjct:   361 ST--STSSSSETDQSSSST 377

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

UNIPROTKB|Q5APQ2 CaO19.4906 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 130 (50.8 bits), Expect = 0.00052, Sum P(2) = 0.00052
 Identities = 64/259 (24%), Positives = 105/259 (40%)

Query:    27 QGIEESQ-SKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSF 85
             Q  ++SQ S+   S  + P+   S  +  FV+      SVS    S  S +       S 
Sbjct:   134 QQSQQSQPSQSPTSTSQAPSSTMSDNNTSFVSPSDTSLSVSATTTSSSSTS------SSS 187

Query:    86 HSSSEGTAHLTTSTGGSASEVGL-NTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPF 144
              SS+  T+ +TTS+  S+S     ++ S+T FS   +  T     S+S++  +S+ ST  
Sbjct:   188 SSSTPSTSDVTTSSSASSSPSSTTSSSSSTAFSSSTT-ETSSSATSSSSTTSSSISSTQS 246

Query:   145 KRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERX 204
               S  S  +F +  + +    SS ++ F+   S +S   S ++   SS   F  T     
Sbjct:   247 NTSSSSNTSFSSSTTASSSFSSSTSSSFS--PSPSSTTSSSSISSTSSS--F--TTSSDT 300

Query:   205 XXXXXXXXXXXXXXXXXPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDI 264
                               + N S    ++   S +TTS+IPS+ +     T ++S   D 
Sbjct:   301 SASSSSSSSVSPSSTTSSSSNFSSSSSSSTITSSSTTSSIPSSSEVSSTSTSASSSSSDS 360

Query:   265 RRLGSNESSIENQHGFYST 283
                 S  SS E      ST
Sbjct:   361 ST--STSSSSETDQSSSST 377

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|I3LRD3 CENPE "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 127 (49.8 bits), Expect = 0.00070, P = 0.00070
 Identities = 65/289 (22%), Positives = 122/289 (42%)

Query:   339 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 398
             ++L  ++++  EEIK    E +  +     +++EC+   E  +   ++ I  EE+ L++ 
Sbjct:  1340 HRLTEKLQESHEEIKTITKERDDLKVTKEALQIECDQLKEEIRETLAKHIETEEE-LKVV 1398

Query:   399 SNELKLERQLENXXXXXXXXXXXXXXXXXXRQDFQSTIEALQEEKKMMQSKLRKASGSGK 458
                LK E++ E                   +Q+ + T + LQ++ + ++ K  +   S K
Sbjct:  1399 RGHLK-EKE-ETISKLTVDLSEKATELSSIQQELEMTNDELQKKTQELREKQEQLI-SIK 1455

Query:   459 SIDFGKXXXXXXXXXXXXEDLAITDTTLDNSNQDTHDDAS-LPRIDASGSTLLPESGRLA 517
              I   +            E L   D +L  +  +    A  L        T++ E   L 
Sbjct:  1456 EIS--ETQGKMSELEELKEHLKAKDASLQRTESERLSLAEKLQTSQEEVKTIIKERDELQ 1513

Query:   518 LEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSS-KLKDLNNELSRKLE 576
                 A+    DQ+R   NI  L++E+   +EE  Q    +++++  KL+++ N L ++LE
Sbjct:  1514 RAQEALQKERDQLR--ENIXELVAEIQELQEEEHQLKMKDVSETQEKLREIEN-LKKQLE 1570

Query:   577 HQTQRLELLTAQNMANENISFRQPDSASTHDHTAYADEGDEV--VERVL 623
              Q   LE     N   ENI   Q    +  + T+   E D++  VE  L
Sbjct:  1571 AQKSTLE-----NTEMENIRLTQRLHENLEEITSVTKERDDLRSVEETL 1614

GO:0045860 "positive regulation of protein kinase activity" evidence=IEA

GO:0043515 "kinetochore binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000940 "condensed chromosome outer kinetochore" evidence=IEA

GO:0000778 "condensed nuclear chromosome kinetochore" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

DICTYBASE|DDB_G0271334 DDB_G0271334 "dilute domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 79 (32.9 bits), Expect = 0.00074, Sum P(3) = 0.00074
 Identities = 32/127 (25%), Positives = 60/127 (47%)

Query:   498 SLPRIDASGSTLLPESGRLA-LEGLAVNIPHDQMRMIH--NINALISELALE-KEELVQA 553
             ++ +++   STL  ES  +A  +GL+  I   + ++IH  N N +I +   + K +L   
Sbjct:   883 NIEQLEQKQSTL--ESSAIANQDGLSDEIDQLKSKLIHQTNENEIIQDENNQLKLQLTSY 940

Query:   554 LSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFRQPDSASTHDHTAYAD 613
                 +++ + +KD   E+  KLE + + L      N  N + S    DS    D +A  +
Sbjct:   941 QDDSISKQNIIKDYQ-EIISKLEQEKEDLIENNKNNKKNSDNSDGHDDSGDDDDRSAEIE 999

Query:   614 EGDEVVE 620
             E  E ++
Sbjct:  1000 EFKEKIQ 1006

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	643
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-07
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-07
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	7e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-06
pfam09726	680	pfam09726, Macoilin, Transmembrane protein	4e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-06
PRK11281	1113	PRK11281, PRK11281, hypothetical protein; Provisio	9e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-05
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	1e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-05
TIGR01843	423	TIGR01843, type_I_hlyD, type I secretion membrane	2e-05
COG2433	652	COG2433, COG2433, Uncharacterized conserved protei	3e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-05
pfam13863	126	pfam13863, DUF4200, Domain of unknown function (DU	5e-05
PRK04863	1486	PRK04863, mukB, cell division protein MukB; Provis	6e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-05
COG3096	1480	COG3096, MukB, Uncharacterized protein involved in	9e-05
pfam04156	186	pfam04156, IncA, IncA protein	1e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	4e-04
pfam00769	244	pfam00769, ERM, Ezrin/radixin/moesin family	6e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-04
pfam13166	713	pfam13166, AAA_13, AAA domain	8e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.001
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.001
PRK10929	1109	PRK10929, PRK10929, putative mechanosensitive chan	0.002
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	0.002
COG4717	984	COG4717, COG4717, Uncharacterized conserved protei	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.003
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	0.003
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	0.004
pfam03962	188	pfam03962, Mnd1, Mnd1 family	0.004

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 65.5 bits (160), Expect = 6e-11
 Identities = 48/196 (24%), Positives = 93/196 (47%), Gaps = 3/196 (1%)

Query: 261 RGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQ---HIEDLTQEKFALQRSLEASRALS 317
              +  L      +E Q      +       LEQ    +E+L +E   L+  LE  +   
Sbjct: 701 EDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERL 760

Query: 318 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAAD 377
           E L  E  SL ++  + +  + +L+ + + LQEE++    ELE        +  E  + +
Sbjct: 761 EELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLE 820

Query: 378 ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE 437
           +R + L  E+  LEE+   L     +LE +LE  + E+   K+++  LE E+++ +  ++
Sbjct: 821 QRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELK 880

Query: 438 ALQEEKKMMQSKLRKA 453
            L+EEK+ ++ +LR+ 
Sbjct: 881 ELEEEKEELEEELREL 896

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 63.2 bits (154), Expect = 3e-10
 Identities = 45/166 (27%), Positives = 81/166 (48%)

Query: 286 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 345
                 LE+ ++ L  E  +L+  LE  R   E L  +   L          + QL+S +
Sbjct: 680 EAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRL 739

Query: 346 EKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLE 405
           E+L+EE++    ELE  +     +  E  + +E    L  E+  LEEK   L+    +LE
Sbjct: 740 EELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELE 799

Query: 406 RQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 451
            +LE ++  + + ++++ SLE+ R+  +  IE L+EE + ++ KL 
Sbjct: 800 EELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLD 845

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 62.8 bits (153), Expect = 4e-10
 Identities = 67/344 (19%), Positives = 136/344 (39%), Gaps = 34/344 (9%)

Query: 261  RGDIRRLGSNESSIENQHGFYSTKH---NEDFAALEQHIEDLTQEKFALQRSLEASRALS 317
               I  L    + +E        +     E+   L + +E+L+++  AL++ L    A  
Sbjct: 683  EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV 742

Query: 318  ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAAD 377
            E L    + L+    +  + + +L+  +E+ +EE+     E+E    +   ++ E  A  
Sbjct: 743  EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802

Query: 378  ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE 437
            E    L +E+  L E+A  LR     LER++  ++  +   +++I  L ++ +   + IE
Sbjct: 803  EALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE 862

Query: 438  ALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHD-D 496
             L+E  + ++S+L        S++                +L      L        +  
Sbjct: 863  ELEELIEELESELEALLNERASLEEALALLR--------SELEELSEELRELESKRSELR 914

Query: 497  ASLPRIDASGSTLLPESGRLALEGLAVNIPH--DQMRMIHNINALISELALEKEELVQAL 554
              L  +    + L      L LEGL V I +  +++   +++     E A   E  ++  
Sbjct: 915  RELEELREKLAQL-----ELRLEGLEVRIDNLQERLSEEYSLTL---EEAEALENKIEDD 966

Query: 555  SSELAQSSKLKDLNNELSR----------KLEHQTQRLELLTAQ 588
              E  +  +LK L N++            + E   +R + LTAQ
Sbjct: 967  EEEARR--RLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQ 1008

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 62.0 bits (151), Expect = 7e-10
 Identities = 60/314 (19%), Positives = 124/314 (39%), Gaps = 12/314 (3%)

Query: 292 LEQHIEDLTQEKFALQRSLEASRALSE----SLAAENSSLTDSYNQQRSVVNQLKSEMEK 347
           LE+ +E L ++    +R  E    L E     L A+   L     +    +++L+ E+E+
Sbjct: 198 LEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEE 257

Query: 348 LQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQ 407
           LQEE++    E+E  ++E   +R E     E    L  E+  LE +   LR    +LE +
Sbjct: 258 LQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENE 317

Query: 408 LENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAA 467
           LE  +  +   K+KI +L++E ++ ++ +E L++    ++    +     + +       
Sbjct: 318 LEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELE---EKLSALLEEL 374

Query: 468 STVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPH 527
             +  +   E   +     +  N+       +  ++     L      L  E   +    
Sbjct: 375 EELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAEL 434

Query: 528 DQMRM-IHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEH-QTQRLELL 585
           ++++  +  +N  + EL  + EEL   L        +L +L  EL R  +   +    L 
Sbjct: 435 EELQTELEELNEELEELEEQLEELRDRLK---ELERELAELQEELQRLEKELSSLEARLD 491

Query: 586 TAQNMANENISFRQ 599
             +     +   R 
Sbjct: 492 RLEAEQRASQGVRA 505

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 62.0 bits (151), Expect = 8e-10
 Identities = 42/167 (25%), Positives = 83/167 (49%)

Query: 289 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKL 348
             +LE  +E+L ++   L+R LE  +    +L  E   L     +    + +L+ E+E+L
Sbjct: 697 LRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEEL 756

Query: 349 QEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQL 408
           QE ++    ELES     A ++ E    +E+ + L  E+  LEE+          LER+L
Sbjct: 757 QERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALEREL 816

Query: 409 ENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 455
           E+ +      +++I  LE+E ++ +  ++ L+EE + ++ +L +   
Sbjct: 817 ESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKE 863

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 60.5 bits (147), Expect = 2e-09
 Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 14/169 (8%)

Query: 284 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 343
              E  A L++ IE+L +++ ALQ  LE      E       +L            +L+ 
Sbjct: 769 SLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQ 828

Query: 344 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 403
           E+E+L+EEI+    ELE           + +  +E  + L  E+  L+E+   L + + +
Sbjct: 829 EIEELEEEIE----ELEE----------KLDELEEELEELEKELEELKEELEELEAEKEE 874

Query: 404 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 452
           LE +L+  + E    ++++  LE E  + +  IE L+E  + +++KL +
Sbjct: 875 LEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLER 923

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 60.5 bits (147), Expect = 2e-09
 Identities = 56/301 (18%), Positives = 111/301 (36%), Gaps = 43/301 (14%)

Query: 285 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSE 344
             E+   L++ +++  +E   L   L+      E L  E S L +   + +  +  L +E
Sbjct: 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE 296

Query: 345 MEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKL 404
           + +L+++ ++    L +   +     LE    +  +K        L+E A  L   E KL
Sbjct: 297 ISRLEQQKQILRERLANLERQLE--ELEAQLEELESK--------LDELAEELAELEEKL 346

Query: 405 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGK 464
           E   E  +S     + ++  LE E ++ +S +E L+E+ + ++SK+ +      S+    
Sbjct: 347 EELKEELESL----EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASL---- 398

Query: 465 TAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVN 524
                       E L                +    R+      LL +     L+ L   
Sbjct: 399 -NNEIERLEARLERL----------------EDRRERLQQEIEELLKKLEEAELKELQAE 441

Query: 525 IPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLEL 584
           +          +   + EL  E E L +AL     +  + +   +   R+L     RL+ 
Sbjct: 442 LE--------ELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDS 493

Query: 585 L 585
           L
Sbjct: 494 L 494

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 59.3 bits (144), Expect = 4e-09
 Identities = 44/189 (23%), Positives = 87/189 (46%), Gaps = 18/189 (9%)

Query: 283 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYN-------QQR 335
           ++  E+   L++ +E+  +E   L+  LE  R   E L  E   L +            R
Sbjct: 249 SRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLR 308

Query: 336 SVVNQLKSEMEKLQEEIKVQLVELESFRN----------EYANVRLECNAADERAKILAS 385
             + +L++E+E+L+E ++    ++E+ +           E   +  E   A E  +   S
Sbjct: 309 ERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLS 368

Query: 386 EVI-GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 444
            ++  LEE    LR    +LE +L   ++E+   K++I SLE+  +     +E L+EE K
Sbjct: 369 ALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELK 428

Query: 445 MMQSKLRKA 453
            ++++L + 
Sbjct: 429 ELEAELEEL 437

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 57.4 bits (139), Expect = 2e-08
 Identities = 37/161 (22%), Positives = 75/161 (46%), Gaps = 7/161 (4%)

Query: 307 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 366
           +RS  A +   + L  E + L     +    +  LK+E+  L++ ++    +LE    + 
Sbjct: 659 KRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQL 718

Query: 367 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLE 426
             ++ E  A +E  + L S +  LEE+   L     +L+ +LE  + E+ S ++ ++ L+
Sbjct: 719 EELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLK 778

Query: 427 KE-------RQDFQSTIEALQEEKKMMQSKLRKASGSGKSI 460
           +E       RQ  Q  +E L+EE +  + +L       +S+
Sbjct: 779 EEIEELEEKRQALQEELEELEEELEEAERRLDALERELESL 819

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 57.4 bits (139), Expect = 2e-08
 Identities = 39/193 (20%), Positives = 83/193 (43%)

Query: 263 DIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAA 322
           +I  L    S +  +      +  E    LE+  E +   K  L+        L + LA 
Sbjct: 296 EIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAE 355

Query: 323 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 382
              +  +   +  +++ +L+   E L+EE+     EL   RNE   ++ E  + +ER + 
Sbjct: 356 LEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLER 415

Query: 383 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 442
           L+  +  L+E+   L +   +L+ +LE    E+   ++++  L    ++ +  +  LQEE
Sbjct: 416 LSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEE 475

Query: 443 KKMMQSKLRKASG 455
            + ++ +L     
Sbjct: 476 LQRLEKELSSLEA 488

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 57.0 bits (138), Expect = 3e-08
 Identities = 37/165 (22%), Positives = 74/165 (44%)

Query: 290 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 349
           A LE  I+ L  E   L+R +E  R   + L  E + L +     R+ + ++  E  + +
Sbjct: 325 AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETR 384

Query: 350 EEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLE 409
           +E+K    +LE  + E   ++ E +   E  + L+ E+  L      + +   +LE + E
Sbjct: 385 DELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKE 444

Query: 410 NSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 454
           +   EI   + K+  L  +   ++  +  L+EE   ++ +L K  
Sbjct: 445 DKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQ 489

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 56.2 bits (136), Expect = 5e-08
 Identities = 33/168 (19%), Positives = 72/168 (42%), Gaps = 2/168 (1%)

Query: 287 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEME 346
           ED ++LEQ IE++  E   L+  +E        L    + L    +  R  + ++++E+ 
Sbjct: 744 EDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR--IPEIQAELS 801

Query: 347 KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER 406
           KL+EE+      L     +   + LE    ++  + L  + I L+E+   +      L  
Sbjct: 802 KLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNG 861

Query: 407 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 454
           + E  + E+   +  +  LE    D +   + L+ + + ++ K+ +  
Sbjct: 862 KKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELE 909

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 55.5 bits (134), Expect = 7e-08
 Identities = 42/182 (23%), Positives = 82/182 (45%), Gaps = 21/182 (11%)

Query: 288 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLT-DSYNQQRSVVNQLKSEME 346
             A+LE+ +E LT+E   L++ LE    L E L  +   L  +   + +  + +L++E+ 
Sbjct: 245 QLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIA 304

Query: 347 KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS--NELK- 403
            L+  I  +  ELE      A +  E +      + L  E   +EE+  R      E   
Sbjct: 305 SLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELERE---IEEERKRRDKLTEEYAE 361

Query: 404 LERQLENSQSEI--------------SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSK 449
           L+ +LE+ ++E+                Y++K+  L++E  + +  ++ LQEE + +  +
Sbjct: 362 LKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEE 421

Query: 450 LR 451
           L 
Sbjct: 422 LA 423

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 54.3 bits (131), Expect = 2e-07
 Identities = 35/153 (22%), Positives = 70/153 (45%)

Query: 290 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 349
             L +   +L +E   L+  LE           E     +   + +  +N+LK E+++LQ
Sbjct: 353 DKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQ 412

Query: 350 EEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLE 409
           EE++    EL       A +  + N  +E  +  A E+   E K  +L ++  K E++L 
Sbjct: 413 EELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELY 472

Query: 410 NSQSEISSYKKKISSLEKERQDFQSTIEALQEE 442
           + + E    +K++S L++E  + ++   A +E 
Sbjct: 473 DLKEEYDRVEKELSKLQRELAEAEAQARASEER 505

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 53.2 bits (128), Expect = 3e-07
 Identities = 60/319 (18%), Positives = 112/319 (35%), Gaps = 24/319 (7%)

Query: 283 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQL- 341
               E  A LE+  E L + K  L           +    E   L     +    + +L 
Sbjct: 235 EALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLE 294

Query: 342 -----KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALR 396
                  E+E+  E ++  L ELE    +  ++       +E+ + L SE   LEE A  
Sbjct: 295 ELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESE---LEELAEE 351

Query: 397 LRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGS 456
                  LE +L+  +  +   +K++    +  +  +  I+ L+EE   + + L +    
Sbjct: 352 KNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEI--- 408

Query: 457 GKSIDFGKTAASTVNASTS--TEDLAITDTTLDNSNQDTHDDASLPRIDAS----GSTLL 510
            + ++  +     +        E++   +  ++         A L          G  L 
Sbjct: 409 QEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELP 468

Query: 511 PESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKL----KD 566
            E  +  LE   + +   +  +  +     +EL  E EEL + L     +  +L    + 
Sbjct: 469 EEHEKELLELYELELEELEEEL--SREKEEAELREEIEELEKELRELEEELIELLELEEA 526

Query: 567 LNNELSRKLEHQTQRLELL 585
           L  EL  KLE     LE L
Sbjct: 527 LKEELEEKLEKLENLLEEL 545

Length = 908

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 53.2 bits (128), Expect = 4e-07
 Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 11/173 (6%)

Query: 283 TKHNEDFAALEQHIEDLTQEKFALQRSL----EASRALSESLAAENSSLTDSYNQQRSVV 338
            +       LEQ + +L + K  L+  L    E    L E+L  E + L     + R+ +
Sbjct: 340 EERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNEL 399

Query: 339 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 398
            +LK E+E L+E ++     LE  + E   +  E        + L  E+  LEE+   LR
Sbjct: 400 EELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELR 459

Query: 399 SNELKLER-------QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 444
               +LER       +L+  + E+SS + ++  LE E++  Q     L+  + 
Sbjct: 460 DRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALES 512

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 52.8 bits (127), Expect = 5e-07
 Identities = 45/216 (20%), Positives = 89/216 (41%), Gaps = 27/216 (12%)

Query: 261  RGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESL 320
              ++        ++E +      +       LEQ IE+L +E   L+  L+      E L
Sbjct: 799  EEELEEAERRLDALERELESLEQRRER----LEQEIEELEEEIEELEEKLDELEEELEEL 854

Query: 321  AAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV---QLVELESFRNEY----ANVRLEC 373
              E   L +   +  +   +L+ E+++L+EE +    +L ELES   E       +R   
Sbjct: 855  EKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERL 914

Query: 374  NAADERAKILASEVIGLEEKALRLRSNEL--KLERQLENSQSEISSY------------- 418
               + + + L  E+  LEE+      + L  +LER++E  + EI +              
Sbjct: 915  EELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEE 974

Query: 419  -KKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 453
             +++   L+ +R+D +   E L E  + +  + R+ 
Sbjct: 975  VEERYEELKSQREDLEEAKEKLLEVIEELDKEKRER 1010

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 52.0 bits (125), Expect = 7e-07
 Identities = 44/201 (21%), Positives = 87/201 (43%), Gaps = 22/201 (10%)

Query: 284 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 343
           K  E++  L++ +  L  E  +L++ LE    L + LA     L +   +   ++ +L+ 
Sbjct: 522 KKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEE 581

Query: 344 EMEKLQEEIKVQLVELESFRNEY---ANVRLECNAADERAKILASEV------IGLEEKA 394
              +  EE++ +L ELE F NEY    +   E    ++  K L  E+      +   EK 
Sbjct: 582 LGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKR 641

Query: 395 LRLRSNEL-------------KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE 441
           L     EL             +L  +      E++  + ++  LEK R++ + T+E L+E
Sbjct: 642 LEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKE 701

Query: 442 EKKMMQSKLRKASGSGKSIDF 462
           E +  +   ++     K+++ 
Sbjct: 702 ELEEREKAKKELEKLEKALER 722

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 51.2 bits (123), Expect = 1e-06
 Identities = 27/159 (16%), Positives = 63/159 (39%)

Query: 293 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 352
            + IE+L ++   L+  +         L  E   L +   Q R  + +L  ++  L++++
Sbjct: 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL 735

Query: 353 KVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ 412
                E+E      A +  E    +   + L   +   EE+     +   +LE Q+E  +
Sbjct: 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795

Query: 413 SEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 451
            E+ + ++ +  L  E          L+E  + ++ ++ 
Sbjct: 796 EELKALREALDELRAELTLLNEEAANLRERLESLERRIA 834

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein

 Score = 49.9 bits (119), Expect = 4e-06
 Identities = 84/438 (19%), Positives = 147/438 (33%), Gaps = 68/438 (15%)

Query: 27  QGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFH 86
           +   E+ SKG  S  ++  + NSG +H      S  +    L  S+        + H  H
Sbjct: 214 KEKSEASSKGLTSTKELVPVQNSGGNHS--LSKSSNSQTPELEYSEKGKDHHHSHNHQHH 271

Query: 87  SSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKR 146
           S      H   +       + +   + +N S P S +T   K + S S  A+  S   K 
Sbjct: 272 SIGINNHHSKHADSKL-QTIEVIE-NHSNKSRPSSSSTNGSKETTSNSSSAAAGSIGSKS 329

Query: 147 SEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERDSF 206
           S+                 S+  +      S      S N    SS     +++ +R S 
Sbjct: 330 SK-----------------SAKHSNRNKSNSSPKSHSSANGSVPSSSVSDNESKQKRASK 372

Query: 207 MSSSSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRR 266
            SS + +S        A             S       PSA + L           DI++
Sbjct: 373 SSSGARDSKKDASGMSANGTVENCIPENKIST------PSAIERL---------EQDIKK 417

Query: 267 LGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSS 326
           L +                  +     Q+  +L  +   L     + ++    L  EN  
Sbjct: 418 LQA------------------ELQQARQNESELRNQISLLTSLERSLKSDLGQLKKENDM 459

Query: 327 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQL---VELESFRNEYANVRLECNAADERAKIL 383
           L    N   S   + K  M+ +++ +K +    V  E    E    + E      RA   
Sbjct: 460 LQTKLNSMVSAKQKDKQSMQSMEKRLKSEADSRVNAEKQLAEEKKRKKEEEETAARAAAQ 519

Query: 384 ASEVIGLEEKALRLRSNEL-----KLERQLENSQSEISSYKKKISSL------EKERQDF 432
           A+       ++L+    +L     KLE  L+  + E    +K+   L      EKE +  
Sbjct: 520 AAASREECAESLKQAKQDLEMEIKKLEHDLKLKEEECRMLEKEAQELRKYQESEKETEVL 579

Query: 433 QSTIEALQEEKKMMQSKL 450
            S ++A+Q++  M+++ L
Sbjct: 580 MSALQAMQDKNLMLENSL 597

This entry is a highly conserved protein present in eukaryotes. Length = 680

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 48.9 bits (117), Expect = 8e-06
 Identities = 41/197 (20%), Positives = 88/197 (44%), Gaps = 29/197 (14%)

Query: 286 NEDFAALEQHIEDLTQ-EKFALQR---SLEASRALSE-SLAAENSSLTDSYNQQR---SV 337
            +    L + I+DL + E+  ++     LEA  A  E S+A +   L D+  +     + 
Sbjct: 271 EQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAE 330

Query: 338 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 397
           +++L +E+E+L+ EI+ +    +    EYA ++ E          L +E+  ++++    
Sbjct: 331 IDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELED-------LRAELEEVDKEFAET 383

Query: 398 RSNELKLERQLENSQSEISSYKKKISSLEKERQ--------------DFQSTIEALQEEK 443
           R        +LE  + EI+  K+++  L++E Q                ++ I  L+EEK
Sbjct: 384 RDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEK 443

Query: 444 KMMQSKLRKASGSGKSI 460
           +    +++K     + +
Sbjct: 444 EDKALEIKKQEWKLEQL 460

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional

 Score = 48.8 bits (117), Expect = 9e-06
 Identities = 61/311 (19%), Positives = 123/311 (39%), Gaps = 60/311 (19%)

Query: 297 EDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQL 356
           + L  E   +Q+ LE + AL + +  +         QQ   + Q  +++ + Q E++   
Sbjct: 52  KLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQ-LKQQ---LAQAPAKLRQAQAELE--- 104

Query: 357 VELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER---QLENSQS 413
                         L+ +  +E  + L++         L LR  E +L +   QL+N+Q+
Sbjct: 105 -------------ALKDDNDEETRETLST---------LSLRQLESRLAQTLDQLQNAQN 142

Query: 414 EISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNAS 473
           +++ Y  ++ SL+ + +  Q+ + A    +++ Q +     G        K     +  S
Sbjct: 143 DLAEYNSQLVSLQTQPERAQAALYANS--QRLQQIRNLLKGG--------KVGGKALRPS 192

Query: 474 TSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMI 533
                L      L+  N        L R    G+T L +  +   + L   I   +   +
Sbjct: 193 QRVL-LQAEQALLNAQN-------DLQRKSLEGNTQLQDLLQKQRDYLTARIQRLE-HQL 243

Query: 534 HNINALISE--LALEKEELVQALSSELAQSSKLKDL-------NNELSRKLEHQTQRLEL 584
             +   I+   L L ++ + +A S + A   +   L       N +LS++L   T++L  
Sbjct: 244 QLLQEAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQRLLKATEKLNT 303

Query: 585 LTAQNMANENI 595
           LT QN+  +N 
Sbjct: 304 LTQQNLRVKNW 314

Length = 1113

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 48.5 bits (116), Expect = 1e-05
 Identities = 44/253 (17%), Positives = 104/253 (41%), Gaps = 11/253 (4%)

Query: 340 QLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 399
           +L+ ++E+L+E+I      L   R E   +  E     +  + L+ ++  L +   RL +
Sbjct: 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA 740

Query: 400 NELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKS 459
              +LE ++     E++  + +I  LE+  ++ +  +   + E + +++++ +     K+
Sbjct: 741 EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800

Query: 460 IDFGKTAASTVNASTSTEDLAITDTTLD-NSNQDTHDDASLPRIDASGSTLLPESGRLAL 518
           +   + A   + A  +  +    +      S +           D        E     +
Sbjct: 801 L---REALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQI---EELSEDI 854

Query: 519 EGLAVNIPH--DQMRMIHN-INALISELALEKEELVQALSSELAQSSKLKDLNNELSRKL 575
           E LA  I    + +  + + + AL++E A  +E L    S     S +L++L ++   +L
Sbjct: 855 ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR-SEL 913

Query: 576 EHQTQRLELLTAQ 588
             + + L    AQ
Sbjct: 914 RRELEELREKLAQ 926

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 13/143 (9%)

Query: 310 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 369
           L++  A+ + L  E   L     + R  + + K+E+E L + ++   +ELE   N+ +  
Sbjct: 6   LKSLLAIQK-LDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVS-- 62

Query: 370 RLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKER 429
           +LE    + R +I          K    + + +K ER+L     EI   K++I+SLE E 
Sbjct: 63  QLESEIQEIRERI----------KRAEEKLSAVKDERELRALNIEIQIAKERINSLEDEL 112

Query: 430 QDFQSTIEALQEEKKMMQSKLRK 452
            +    IE L++E + ++ +L +
Sbjct: 113 AELMEEIEKLEKEIEDLKERLER 135

Length = 239

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 46/191 (24%), Positives = 88/191 (46%), Gaps = 3/191 (1%)

Query: 264 IRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE 323
           I+ LG  E  +  +      +   + A+LE+ I +  +E    +  L    A  + L AE
Sbjct: 281 IKDLGEEEQ-LRVKEKIGELE--AEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAE 337

Query: 324 NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 383
              L     ++R   ++L  E  +L+EE++    ELE    E+A  R E     E+ + L
Sbjct: 338 IEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKL 397

Query: 384 ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 443
             E+  L+ +  RL+    +L  +L +  + I+  + KI+ LE+E++D    I+  + + 
Sbjct: 398 KREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKL 457

Query: 444 KMMQSKLRKAS 454
           + + + L K  
Sbjct: 458 EQLAADLSKYE 468

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 37/209 (17%), Positives = 87/209 (41%), Gaps = 43/209 (20%)

Query: 257 STSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIED----LTQEKFALQRSLEA 312
           +T    D   L S    +E +            A  +  IE     L+ E  A+   ++ 
Sbjct: 76  ATDVEADAAELESQVLRLEAEVARLRA-----EADSQAAIEFPDDLLSAEDPAVPELIKG 130

Query: 313 SRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE 372
            ++L     +  S+L       R+ +  + +++++L+ E+     +L++ R         
Sbjct: 131 QQSL---FESRKSTL-------RAQLELILAQIKQLEAELAGLQAQLQALR--------- 171

Query: 373 CNAADERAKILASEVIG---LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKE- 428
                ++ ++++ E+     L+EK L  R   L+LER+   +Q E+   + ++  L+++ 
Sbjct: 172 -----QQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQGELGRLEAELEVLKRQI 226

Query: 429 ---RQDFQSTIEALQEEKKMMQSKLRKAS 454
              + + Q   +  +EE   +  +L +A 
Sbjct: 227 DELQLERQQIEQTFREE---VLEELTEAQ 252

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins [Protein fate, Protein and peptide secretion and trafficking]. Length = 423

>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 39/171 (22%), Positives = 70/171 (40%), Gaps = 20/171 (11%)

Query: 293 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 352
           E   E+  +E    ++ ++      E L  ENS L     + +  + +L+SE+E+ + E+
Sbjct: 407 EGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREV 466

Query: 353 KVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ 412
           + ++ +             E  A D R + L  E   LEEK  R+   E KL    +  +
Sbjct: 467 RDKVRK-----------DREIRARDRRIERLEKE---LEEKKKRVEELERKLAELRKMRK 512

Query: 413 SEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSK---LRKASGSGKSI 460
            E+S     +  +EK   +    IE  +EE  + +     +   SG G   
Sbjct: 513 LELSGKGTPVKVVEKLTLE---AIEEAEEEYGIKEGDVILVEDPSGGGART 560

Length = 652

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 46.6 bits (111), Expect = 4e-05
 Identities = 36/161 (22%), Positives = 71/161 (44%), Gaps = 14/161 (8%)

Query: 284 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 343
              E+   LE+ +E+  +   AL+R LE+     E L  E   L +   +       L+ 
Sbjct: 790 ALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEE-------LEE 842

Query: 344 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 403
           ++++L+EE+       E    E   ++ E    +   + L  E+  LEE+   L     +
Sbjct: 843 KLDELEEEL-------EELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRE 895

Query: 404 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 444
           LE +L   + EI   ++++  LE + +  +  +  L+EE +
Sbjct: 896 LESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELE 936

Length = 1163

>gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200)

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 25/112 (22%), Positives = 57/112 (50%), Gaps = 12/112 (10%)

Query: 331 YNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL 390
           + ++  ++ Q + E+EK +EE++  L++ + F  E    R     A+++A+         
Sbjct: 23  FERREELLKQREEELEKKEEELQESLIKFDKFLKENEAKR---RRAEKKAEE-------- 71

Query: 391 EEKALRLRSNELK-LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE 441
           E+K  + +  E+K L+ +LE  ++EI   ++K+   +   +  +S +E   E
Sbjct: 72  EKKLRKEKEEEIKELKAELEELKAEIEKLEEKLEEYQPYEEFLESVVERSPE 123

This family is found in eukaryotes. It is a coiled-coil domain of unknwon function. Length = 126

>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional

 Score = 46.1 bits (110), Expect = 6e-05
 Identities = 36/171 (21%), Positives = 74/171 (43%), Gaps = 24/171 (14%)

Query: 287  EDFAALEQHIEDLTQEKFAL----QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLK 342
            +D+   +Q   D  Q+ FAL    QR    S   +  + A+NS L +   Q+      L+
Sbjct: 942  QDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQR------LE 995

Query: 343  SEMEKLQEEIKVQLVELESFRNEYANVRL----ECNAADERAKILASEV--IGL-----E 391
             + E+ +   + QL + ++   +Y  V        +A  +  + L  E+  +G+      
Sbjct: 996  -QAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGA 1054

Query: 392  EKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 442
            E+  R R +EL    +L  ++S  +  +K+++  E E  +    +  L+ +
Sbjct: 1055 EERARARRDEL--HARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERD 1103

Length = 1486

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.8 bits (109), Expect = 7e-05
 Identities = 30/169 (17%), Positives = 74/169 (43%), Gaps = 1/169 (0%)

Query: 284 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 343
           K  E+ + +E  + ++ Q+   L    E      + L  +   L +        +  L  
Sbjct: 802 KLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNG 861

Query: 344 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 403
           + E+L+EE++     L    +   +++ E +  + + + L  ++  LE +  + R    +
Sbjct: 862 KKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSE 921

Query: 404 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 452
           L+ +LE  + E+S  +      E+  ++  S +E +Q E + ++ ++R 
Sbjct: 922 LKAKLEALEEELSEIEDPKGEDEEIPEEELS-LEDVQAELQRVEEEIRA 969

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]

 Score = 45.6 bits (108), Expect = 9e-05
 Identities = 42/182 (23%), Positives = 82/182 (45%), Gaps = 18/182 (9%)

Query: 287  EDFAALEQHIEDLTQEKFAL----QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLK 342
            ED+A  +Q      Q+ FAL    QR    S + S  + +ENS L +   + R  + Q +
Sbjct: 941  EDYAQAQQMQRQARQQAFALTEVVQRRAHFSYSDSAEMLSENSDLNE---KLRQRLEQAE 997

Query: 343  SEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVI--------GLEEKA 394
            +E  + +E+++    +L  +    A+++   +   E    L  E+         G EE+A
Sbjct: 998  AERTRAREQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQQELQDIGVRADSGAEERA 1057

Query: 395  LRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 454
             R+R +EL    QL  ++S  +  +K+++  E E  +    +  L+ +   M+ ++  A 
Sbjct: 1058 -RIRRDEL--HAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYFEMREQVVTAK 1114

Query: 455  GS 456
              
Sbjct: 1115 AG 1116

Length = 1480

>gnl|CDD|217933 pfam04156, IncA, IncA protein

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 28/132 (21%), Positives = 57/132 (43%), Gaps = 7/132 (5%)

Query: 306 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE 365
           L           + L      L++   Q    +++L+ E+E L+E I     ELE  + +
Sbjct: 60  LLLKAPVQSVRPQKLEELQGELSELKQQ----LSELQEELEDLEERIAELESELEDLKED 115

Query: 366 YANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 425
              +R    + +ER + L   +  L ++   LR     L  ++E  + E+   ++ +  L
Sbjct: 116 LQLLRELLKSLEERLESLEESIKELAKELRELRQ---DLREEVEELREELERLQENLQRL 172

Query: 426 EKERQDFQSTIE 437
           ++  Q+ QS +E
Sbjct: 173 QEAIQELQSLLE 184

Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is non-fusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA, is functionally associated with the homotypic fusion of inclusions. This family probably includes members of the wider Inc family rather than just IncA. Length = 186

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 40/173 (23%), Positives = 76/173 (43%), Gaps = 12/173 (6%)

Query: 282 STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQL 341
           S     +   L + +E L +E  +LQ  L       + L+ E S  +    +    + QL
Sbjct: 669 SRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQL 728

Query: 342 KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE 401
           + E EKL+E ++    +L S   E  NV+ E        K L + +  LEE   +L    
Sbjct: 729 EQEEEKLKERLEELEEDLSSLEQEIENVKSE-------LKELEARIEELEEDLHKLEEAL 781

Query: 402 LKLER-----QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSK 449
             LE      ++   Q+E+S  ++++S +E   ++ +  +  L  EK+ ++ +
Sbjct: 782 NDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKE 834

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 64/318 (20%), Positives = 127/318 (39%), Gaps = 42/318 (13%)

Query: 340 QLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 399
              +E+++L+E ++    EL S ++E   +    +   +     + ++  +E++  +L  
Sbjct: 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQ 730

Query: 400 NELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR--KASGSG 457
            E KL+ +LE  + ++SS +++I +++ E ++ ++ IE L+E+   ++  L   +A  S 
Sbjct: 731 EEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH 790

Query: 458 KSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLA 517
             I   +   S +    S  +  + +            +  L R      TL  E     
Sbjct: 791 SRIPEIQAELSKLEEEVSRIEARLREI-----------EQKLNR-----LTLEKEYLEKE 834

Query: 518 LEGLAVNIPHDQMRM------IHNINALISELALEKEEL---VQALSSEL---------- 558
           ++ L       + ++      I N+N    EL  E EEL   ++ L S L          
Sbjct: 835 IQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDEL 894

Query: 559 -AQSSKLKDLNNELSRKLEHQTQRLELLTA--QNMANENISFRQPDSASTHDHTAYADEG 615
            AQ  +L+    EL  ++E + +RL  L A  + +  E      P               
Sbjct: 895 EAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLE 954

Query: 616 D--EVVERVLGWIMKLFP 631
           D    ++RV   I  L P
Sbjct: 955 DVQAELQRVEEEIRALEP 972

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 35/168 (20%), Positives = 74/168 (44%), Gaps = 13/168 (7%)

Query: 290  AALEQHIEDLTQEKFALQRSLE----ASRALSES---LAAENSSLTDSYNQQRSVVNQLK 342
             ++E+ IE+L  +K  L+  LE    A R L      L  E   L     +    + +L+
Sbjct: 850  KSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELE 909

Query: 343  SEMEKLQEEIKVQLVELESFRNEYANVR------LECNAADERAKILASEVIGLEEKALR 396
            +++EK ++ +     +LE+   E + +        E    +   + + +E+  +EE+   
Sbjct: 910  AQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRA 969

Query: 397  LRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 444
            L    +   ++ E     +   K+K + LE+ER+     IE  +++K+
Sbjct: 970  LEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKR 1017

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 43.5 bits (103), Expect = 4e-04
 Identities = 35/187 (18%), Positives = 71/187 (37%), Gaps = 21/187 (11%)

Query: 287 EDFAALEQHIEDLTQ-------EKFALQRSLEASRALSESLAAENSSLTDSY---NQQRS 336
           E+   LE  IEDL +       E+  L   +   R   E L  E   L       +    
Sbjct: 251 EELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAE 310

Query: 337 VVNQLKSEMEK----LQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE 392
            V   + E+E     L++ ++   V  ++   E  ++R + +  +ERA+        L E
Sbjct: 311 AVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAE-------ELRE 363

Query: 393 KALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 452
           +A  L S   +    +E+ + EI   +++I  L +   D    +   ++  + ++ +  +
Sbjct: 364 EAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDE 423

Query: 453 ASGSGKS 459
                  
Sbjct: 424 LREREAE 430

Length = 880

>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family

 Score = 41.7 bits (98), Expect = 6e-04
 Identities = 39/172 (22%), Positives = 68/172 (39%), Gaps = 14/172 (8%)

Query: 344 EMEKLQEEIKVQLVELESFRNEYANVRLE-----CNAADERAKILASEVIGLEEKALRLR 398
           E E+ Q+E++ ++ ++E      A   LE         +E+ K    E   LE+KA  L 
Sbjct: 2   EAEREQQELEERMEQMEE-DMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELE 60

Query: 399 SNELKLERQLENS-------QSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 451
               +LE +   S       ++E+     +++ LE+ER+  ++    LQ+E +  Q    
Sbjct: 61  EENRRLEEEAAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQLQQELREAQEAHE 120

Query: 452 KASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRID 503
           +A           TA   V A  + E L   D   + S  D   D  +    
Sbjct: 121 RARQELLEAAAAPTAPPHVAAPVNGEQLEPDDNGEEAS-ADLETDPDMKDRS 171

This family of proteins contain a band 4.1 domain (pfam00373), at their amino terminus. This family represents the rest of these proteins. Length = 244

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.7 bits (101), Expect = 7e-04
 Identities = 48/251 (19%), Positives = 90/251 (35%), Gaps = 18/251 (7%)

Query: 363 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKI 422
           R E   +  +    +E+   L   +  L ++   L     +L ++LE    +IS+ +K +
Sbjct: 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL 735

Query: 423 SSLEKERQ-------DFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTS 475
           + LE E +            +  L+ E + ++ +L +A       +              
Sbjct: 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQ-IEQL 794

Query: 476 TEDLAITDTTLDNSN---QDTHDDASLPRIDASGSTLLPESGRLALEGLA---VNIPHDQ 529
            E+L      LD         +++A+  R           +    LE L      +  D 
Sbjct: 795 KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854

Query: 530 MRMIHNINAL---ISELALEKEELVQALSSELAQSSKLKDLNNELSRKL-EHQTQRLELL 585
             +   I  L   I EL  E E L+   +S     + L+    ELS +L E +++R EL 
Sbjct: 855 ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELR 914

Query: 586 TAQNMANENIS 596
                  E ++
Sbjct: 915 RELEELREKLA 925

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 42.3 bits (100), Expect = 8e-04
 Identities = 36/201 (17%), Positives = 86/201 (42%), Gaps = 27/201 (13%)

Query: 286 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 345
           +E++  L + +E+L  +    +  +E +    ES+       ++        V +LK+ +
Sbjct: 277 DEEYQELIEQLEELIDK---YESHIEKALEELESILDTEKENSEFKLD----VEELKALL 329

Query: 346 EKLQEEIKV-------------QLVELESFRNEYANVRLECNAADERAKILASEVIGLEE 392
           E L+E ++                +ELES  +   ++    +A +E  +    ++  L++
Sbjct: 330 EALEEILEKNLQKLEEKLKDPSTSIELESITDLIESINDIIDAINELIREHNEKIDNLKK 389

Query: 393 KALRLRSNELKLERQLENS-QSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 451
           +  + +    KL   L    + +I +Y+K+   LEK     +  I+ L+ E K ++ +++
Sbjct: 390 EKNKAKK---KLWLHLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIK 446

Query: 452 KASGSGKSIDFGKTAASTVNA 472
           +      +I   +  A  +N 
Sbjct: 447 ELEKQLTNI---EPTADEINK 464

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 42/252 (16%), Positives = 100/252 (39%), Gaps = 41/252 (16%)

Query: 334 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEK 393
           Q+  + +L+ E+ +L+ +++    EL+S +NE  ++         + + L  ++  L+ +
Sbjct: 665 QKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRE 724

Query: 394 ALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 453
              L     +L+ +LE  + E+   ++++  L++  ++ +  +E+L+E    ++ ++ + 
Sbjct: 725 LAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEEL 784

Query: 454 SGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPES 513
               +++                E+L   +  L+ + +          ++    +L    
Sbjct: 785 EEKRQAL---------------QEELEELEEELEEAERRLDA------LERELESLEQRR 823

Query: 514 GRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSR 573
            RL  E                    I EL  E EEL + L     +  +L+    EL  
Sbjct: 824 ERLEQE--------------------IEELEEEIEELEEKLDELEEELEELEKELEELKE 863

Query: 574 KLEHQTQRLELL 585
           +LE      E L
Sbjct: 864 ELEELEAEKEEL 875

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 35/193 (18%), Positives = 71/193 (36%), Gaps = 29/193 (15%)

Query: 285 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSE 344
             +      + +ED  QE   L+  LE  R L          L +   + +  + +L+  
Sbjct: 553 QLQQLKEELRQLEDRLQE---LKELLEELRLLRTRKEELEE-LRERLKELKKKLKELEER 608

Query: 345 MEKLQE------------EIKVQLVELESFRNEY-ANVRLECNAADERAKI------LAS 385
           + +L+E            E++    ELES   +      LE        ++      L +
Sbjct: 609 LSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEA 668

Query: 386 EVIGLEEKALRL------RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 439
           E+    ++               +LE +LE  + E+    KK+  +E+  ++ +S    L
Sbjct: 669 EIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAEL 728

Query: 440 QEEKKMMQSKLRK 452
           +E KK ++   + 
Sbjct: 729 EELKKELEKLEKA 741

Length = 908

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 40/186 (21%), Positives = 77/186 (41%), Gaps = 15/186 (8%)

Query: 264 IRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE 323
            ++L   E  +            E    LE+ +++L  E F     LE   A  E    E
Sbjct: 562 EKKLDELEEELAELLKELEELGFESVEELEERLKEL--EPF-YNEYLELKDAEKELEREE 618

Query: 324 NS--SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN--EYANVRLECNAADER 379
                L +  ++    + + +  +E+L++E++    ELE   +  EY  +R E       
Sbjct: 619 KELKKLEEELDKAFEELAETEKRLEELRKELE----ELEKKYSEEEYEELREEYLELSRE 674

Query: 380 AKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 439
              L +E+  LE++   ++    KL+ +LE    E    KK++  LEK  +  +   E +
Sbjct: 675 LAGLRAELEELEKRREEIKKTLEKLKEELE----EREKAKKELEKLEKALERVEELREKV 730

Query: 440 QEEKKM 445
           ++ K +
Sbjct: 731 KKYKAL 736

Length = 880

>gnl|CDD|236798 PRK10929, PRK10929, putative mechanosensitive channel protein; Provisional

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 541 SELALEKEELVQALSSELAQS-SKLKDLNNELSRKLEHQTQRLELLTAQN--MANENISF 597
           +E ALE  EL+   S +L +S      +N ELS+ L  Q QR++L+ +Q    A++ +  
Sbjct: 239 AERALESTELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQV 298

Query: 598 RQ 599
           RQ
Sbjct: 299 RQ 300

Length = 1109

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 41.0 bits (97), Expect = 0.002
 Identities = 37/178 (20%), Positives = 57/178 (32%), Gaps = 34/178 (19%)

Query: 265 RRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAEN 324
           +RLG  E+ IE           +    L + I  L      L+R LE             
Sbjct: 495 KRLGLPENIIEEAKKLIGEDKEK----LNELIASLE----ELERELE------------- 533

Query: 325 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES-FRNEYANVRLECNAADERAKIL 383
                   Q+      L  E EKL+EE++ +  +L+            E   A + AK  
Sbjct: 534 --------QKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKE 585

Query: 384 ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE 441
           A E+I    K LR          +            K     EK+++  +   E L+ 
Sbjct: 586 ADEII----KELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELKV 639

Length = 782

>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function unknown]

 Score = 41.0 bits (96), Expect = 0.002
 Identities = 47/204 (23%), Positives = 77/204 (37%), Gaps = 30/204 (14%)

Query: 269 SNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE----- 323
           S E S E Q    ST   +D   L Q   +LT +   L+    A     E L A      
Sbjct: 604 SRELSPEQQLDILSTM--KDLKKLMQKKAELTHQVARLREEQAAFEERVEGLLAVLEAQF 661

Query: 324 ------------NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 371
                         +      + R  +       ++L +E++    ELE  R E  ++  
Sbjct: 662 IDLSTLFCVQRLRVAAELQKEEARLALEGNIERTKELNDELR---AELELHRKEILDL-F 717

Query: 372 ECNAADERAKILASEVIGLEEKALRLRSNELK-LERQLENSQS---EISSYKKKISSLEK 427
           +C  AD             EE+ L  R + L+ LE QLE   +   E+S+   +    E+
Sbjct: 718 DCGTADTEDAFRE---AAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEE 774

Query: 428 ERQDFQSTIEALQEEKKMMQSKLR 451
           E    +  I+AL EE + + +++ 
Sbjct: 775 ELALLEEAIDALDEEVEELHAQVA 798

Length = 984

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.8 bits (96), Expect = 0.003
 Identities = 53/274 (19%), Positives = 108/274 (39%), Gaps = 40/274 (14%)

Query: 338 VNQLKSEMEKLQEEI--------KVQLVELESFRNEYANVRLECNAADERAKILASEVIG 389
           V +   + EK  EE+        ++ L+ ++  R +   +R E   A ER + L  E   
Sbjct: 165 VAEFDRKKEKALEELEEVEENIERLDLI-IDEKRQQLERLRREREKA-ERYQALLKE--- 219

Query: 390 LEEKALRLRSNELK-LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS 448
             E        E + LERQ E  + +++S ++++  L +E  + +  +E +++  + +  
Sbjct: 220 KREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNK 279

Query: 449 KLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHD-DASLPRIDASGS 507
           K+ K  G  + +   +             ++A  + ++    ++  D +  L +++A   
Sbjct: 280 KI-KDLGEEEQLRVKEKIGEL------EAEIASLERSIAEKERELEDAEERLAKLEAEID 332

Query: 508 TLLPESGRLALEGLAVNIPHDQMRMIHNINALIS-------------ELALEKEELVQAL 554
            LL E     +E L   I  ++ R                       E+  E  E    L
Sbjct: 333 KLLAE-----IEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDEL 387

Query: 555 SSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQ 588
                +  KLK   NEL R+L+   + L+ L+ +
Sbjct: 388 KDYREKLEKLKREINELKRELDRLQEELQRLSEE 421

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 40/211 (18%), Positives = 67/211 (31%), Gaps = 23/211 (10%)

Query: 288 DFAALEQHIEDLTQEKFALQRSLEASRA-LSESLAA-----ENSSLT------DSYNQQR 335
           D   L + I DL     AL+      R  L+E LAA      N          D+    R
Sbjct: 88  DLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVR 147

Query: 336 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKAL 395
             +         L      ++  L++   + A VR E  A       L SE    + K  
Sbjct: 148 LAIY-----YGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLA 202

Query: 396 RLRSNELKLERQLENS----QSEISSYKKKISSLEKE--RQDFQSTIEALQEEKKMMQSK 449
           +L     K   QL +     Q ++   +   S L+ E    +  +             + 
Sbjct: 203 QLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAA 262

Query: 450 LRKASGSGKSIDFGKTAASTVNASTSTEDLA 480
             +A+ + ++ +  K  A      +ST    
Sbjct: 263 RARAAEAKRTGETYKPTAPEKMLISSTGGFG 293

Length = 420

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 31/139 (22%), Positives = 53/139 (38%), Gaps = 18/139 (12%)

Query: 283 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLK 342
              N+   ALE  +EDL  +   L+  ++  R   +    + S++ D           L 
Sbjct: 41  EALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDEREL-----RALN 95

Query: 343 SEMEKLQEEIKVQLVELESFRNEYAN------------VRLECNAADERAKILASEVIGL 390
            E++  +E I     EL     E                RLE N A+  A++   EV  +
Sbjct: 96  IEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARL-EEEVAEI 154

Query: 391 EEKALRLRSNELKLERQLE 409
            E+   L S   +L+ +L+
Sbjct: 155 REEGQELSSKREELKEKLD 173

Length = 239

>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 7/69 (10%)

Query: 393 KALRLRSNEL-KLERQLENSQSEISSYKKKISSLEKERQDFQST------IEALQEEKKM 445
           +AL      L KL+++LE  +  I+  + +I  L+K R++ +        ++ L++E K 
Sbjct: 62  QALNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKK 121

Query: 446 MQSKLRKAS 454
           ++++L K  
Sbjct: 122 LKAELEKYE 130

This family of proteins includes MND1 from S. cerevisiae. The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	643
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.2
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.09
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.0
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	97.95
PRK02224	880	chromosome segregation protein; Provisional	97.91
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.65
PRK02224	880	chromosome segregation protein; Provisional	97.56
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	97.54
PRK11637	428	AmiB activator; Provisional	97.49
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	97.46
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.4
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.25
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	97.22
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	97.2
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.18
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.18
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.1
PRK11637	428	AmiB activator; Provisional	97.05
PHA02562	562	46 endonuclease subunit; Provisional	97.02
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	96.97
PHA02562	562	46 endonuclease subunit; Provisional	96.95
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	96.86
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.81
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	96.72
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	96.7
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	96.7
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.64
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	96.63
PRK09039	343	hypothetical protein; Validated	96.63
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	96.57
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	96.53
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.51
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	96.44
PRK03918	880	chromosome segregation protein; Provisional	96.43
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.39
PRK03918	880	chromosome segregation protein; Provisional	96.34
PRK04778	569	septation ring formation regulator EzrA; Provision	96.33
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	96.31
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.18
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	96.15
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.05
PF14662	193	CCDC155: Coiled-coil region of CCDC155	96.05
PRK09039	343	hypothetical protein; Validated	96.05
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	95.97
PF00038	312	Filament: Intermediate filament protein; InterPro:	95.97
PRK10361	475	DNA recombination protein RmuC; Provisional	95.94
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.81
PRK04778	569	septation ring formation regulator EzrA; Provision	95.8
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	95.77
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	95.75
PRK04863	1486	mukB cell division protein MukB; Provisional	95.74
PRK04863	1486	mukB cell division protein MukB; Provisional	95.65
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	95.65
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	95.64
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	95.62
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	95.6
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	95.53
PF00038	312	Filament: Intermediate filament protein; InterPro:	95.35
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	95.26
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	95.26
KOG0933	1174	consensus Structural maintenance of chromosome pro	95.17
PF10186	302	Atg14: UV radiation resistance protein and autopha	95.14
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	95.06
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	95.01
KOG0933	1174	consensus Structural maintenance of chromosome pro	94.99
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	94.95
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	94.91
COG4372	499	Uncharacterized protein conserved in bacteria with	94.91
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.87
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	94.85
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	94.83
PF13166	712	AAA_13: AAA domain	94.76
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	94.54
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	94.45
PF05700	221	BCAS2: Breast carcinoma amplified sequence 2 (BCAS	94.43
KOG0971	1243	consensus Microtubule-associated protein dynactin	94.41
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	94.35
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	94.3
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	94.29
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	94.23
PF10186	302	Atg14: UV radiation resistance protein and autopha	94.23
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	94.19
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	94.16
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	94.14
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	94.1
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	93.95
PF13514	1111	AAA_27: AAA domain	93.9
KOG1103	561	consensus Predicted coiled-coil protein [Function	93.9
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	93.87
KOG0979	1072	consensus Structural maintenance of chromosome pro	93.82
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	93.79
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	93.75
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	93.73
KOG0971	1243	consensus Microtubule-associated protein dynactin	93.67
KOG0996	1293	consensus Structural maintenance of chromosome pro	93.66
COG4942	420	Membrane-bound metallopeptidase [Cell division and	93.55
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	93.36
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	93.26
PRK11281	1113	hypothetical protein; Provisional	93.18
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	93.08
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	93.07
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	93.03
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	93.01
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	92.98
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	92.96
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	92.96
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	92.92
KOG0996	1293	consensus Structural maintenance of chromosome pro	92.88
PRK10476	346	multidrug resistance protein MdtN; Provisional	92.85
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	92.83
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	92.82
cd07651	236	F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology	92.82
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	92.76
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	92.66
PF13514	1111	AAA_27: AAA domain	92.58
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	92.55
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	92.54
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	92.45
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	92.44
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	92.12
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	92.03
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	92.0
PLN03188	1320	kinesin-12 family protein; Provisional	91.98
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	91.89
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	91.79
PRK01156	895	chromosome segregation protein; Provisional	91.62
KOG4673	961	consensus Transcription factor TMF, TATA element m	91.58
TIGR01010	362	BexC_CtrB_KpsE polysaccharide export inner-membran	91.57
PRK15422	79	septal ring assembly protein ZapB; Provisional	91.54
cd07647	239	F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/	91.4
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	91.38
PRK11519	719	tyrosine kinase; Provisional	91.0
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	90.95
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	90.88
KOG4673	961	consensus Transcription factor TMF, TATA element m	90.8
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	90.74
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	90.71
PRK11281	1113	hypothetical protein; Provisional	90.65
PF14662	193	CCDC155: Coiled-coil region of CCDC155	90.55
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	90.49
PF09744	158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	90.49
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	90.45
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	90.43
cd07671	242	F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin	90.41
PF02050	123	FliJ: Flagellar FliJ protein; InterPro: IPR012823	90.33
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	90.13
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	90.04
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	89.98
PF05546	207	She9_MDM33: She9 / Mdm33 family; InterPro: IPR0088	89.96
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	89.81
KOG0964	1200	consensus Structural maintenance of chromosome pro	89.74
KOG0288	459	consensus WD40 repeat protein TipD [General functi	89.5
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	89.44
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	89.35
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	89.2
cd07655	258	F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/	89.12
KOG0249	916	consensus LAR-interacting protein and related prot	89.08
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	88.96
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	88.84
PRK10884	206	SH3 domain-containing protein; Provisional	88.83
PRK10929	1109	putative mechanosensitive channel protein; Provisi	88.8
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	88.51
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	88.33
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	88.22
PRK10246	1047	exonuclease subunit SbcC; Provisional	88.2
PRK01156	895	chromosome segregation protein; Provisional	88.18
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	88.14
cd07653	251	F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B	88.11
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	88.07
PF09731	582	Mitofilin: Mitochondrial inner membrane protein; I	88.01
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	87.82
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	87.73
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	87.09
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	86.96
KOG0964	1200	consensus Structural maintenance of chromosome pro	86.85
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	86.84
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	86.79
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	86.77
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	86.63
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	86.63
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	86.6
PRK10361	475	DNA recombination protein RmuC; Provisional	86.47
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	86.44
cd07653	251	F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B	86.32
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	86.21
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	86.14
PRK10884	206	SH3 domain-containing protein; Provisional	86.1
COG5185	622	HEC1 Protein involved in chromosome segregation, i	86.0
cd07675	252	F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/	85.78
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	85.57
PF06548	488	Kinesin-related: Kinesin-related; InterPro: IPR010	85.48
COG2433	652	Uncharacterized conserved protein [Function unknow	85.32
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	85.11
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	84.93
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	84.88
TIGR02473	141	flagell_FliJ flagellar export protein FliJ. Member	84.87
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	84.83
KOG1962	216	consensus B-cell receptor-associated protein and r	84.67
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	84.64
cd07672	240	F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin	84.6
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	84.27
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	84.25
PF13166	712	AAA_13: AAA domain	84.01
TIGR02231	525	conserved hypothetical protein. This family consis	83.73
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	83.38
PF13815	118	Dzip-like_N: Iguana/Dzip1-like DAZ-interacting pro	83.24
COG4942	420	Membrane-bound metallopeptidase [Cell division and	82.95
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	82.9
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	82.88
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	82.85
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	82.82
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	82.58
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	82.55
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	82.51
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	82.48
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	82.3
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	82.03
PRK09973	85	putative outer membrane lipoprotein; Provisional	81.96
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	81.8
PF04380	79	BMFP: Membrane fusogenic activity; InterPro: IPR00	81.56
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	81.34
PF13942	179	Lipoprotein_20: YfhG lipoprotein	80.87
PRK10722	247	hypothetical protein; Provisional	80.57
PRK15178	434	Vi polysaccharide export inner membrane protein Ve	80.56
cd07649	233	F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Am	80.38
KOG2264	907	consensus Exostosin EXT1L [Signal transduction mec	80.03

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.20  E-value=0.0024  Score=72.16  Aligned_cols=163  Identities=17%  Similarity=0.313  Sum_probs=72.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 006482          287 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY  366 (643)
Q Consensus       287 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr  366 (643)
                      .+...|++.++++..+--.+...+.....-.+++..+-..+..........+..++.++++++.++......++.+..+.
T Consensus       677 ~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~  756 (1179)
T TIGR02168       677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL  756 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555554444444444444444444444444444444444444444555444444444444444444444


Q ss_pred             HHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHH
Q 006482          367 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM  446 (643)
Q Consensus       367 daArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklL  446 (643)
                      ..+..+.....++...+-.++-.|++++..++...-.++.++..+..++..++.++..+..+...++..+..++.+.+.+
T Consensus       757 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l  836 (1179)
T TIGR02168       757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAAT  836 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444443333222223334444444444444444444444444444444444444444


Q ss_pred             HHH
Q 006482          447 QSK  449 (643)
Q Consensus       447 qsk  449 (643)
                      +.+
T Consensus       837 ~~~  839 (1179)
T TIGR02168       837 ERR  839 (1179)
T ss_pred             HHH
Confidence            433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.09  E-value=0.0056  Score=69.23  Aligned_cols=102  Identities=17%  Similarity=0.229  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 006482          290 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV  369 (643)
Q Consensus       290 aaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaA  369 (643)
                      ..|++.|+++..+.-.+...++..++-.+.+..+-..+.....+....+..++.++..++.++......++.+..|...+
T Consensus       673 ~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~  752 (1179)
T TIGR02168       673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL  752 (1179)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444433333344444444444444433333333333333333


Q ss_pred             hhhhhhHHHHHHHHHHHHHhHH
Q 006482          370 RLECNAADERAKILASEVIGLE  391 (643)
Q Consensus       370 rle~~aA~ERak~LAaEVV~LE  391 (643)
                      ..++....+.-..+..++..++
T Consensus       753 ~~~~~~~~~~~~~~~~~l~~~~  774 (1179)
T TIGR02168       753 SKELTELEAEIEELEERLEEAE  774 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.00  E-value=0.02  Score=65.46  Aligned_cols=47  Identities=15%  Similarity=0.172  Sum_probs=29.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 006482          287 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ  333 (643)
Q Consensus       287 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNq  333 (643)
                      .++..++..+++++.+.-.+...++....-.+.+-.+-..+...++.
T Consensus       237 ~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  283 (1164)
T TIGR02169       237 RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKD  283 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34555566666666666666666666666556666555556555555

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=97.95  E-value=0.0021  Score=73.13  Aligned_cols=11  Identities=27%  Similarity=0.229  Sum_probs=6.0

Q ss_pred             CCccccCCCCc
Q 006482           74 SNAIALGNGHS   84 (643)
Q Consensus        74 sn~~~~~~g~s   84 (643)
                      -|+|.-.||+|
T Consensus        25 ~~~i~G~NGsG   35 (1164)
T TIGR02169        25 FTVISGPNGSG   35 (1164)
T ss_pred             eEEEECCCCCC
Confidence            35555555555

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK02224 chromosome segregation protein; Provisional

Probab=97.91  E-value=0.018  Score=65.35  Aligned_cols=76  Identities=17%  Similarity=0.241  Sum_probs=33.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006482          288 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSY-------NQQRSVVNQLKSEMEKLQEEIKVQLVELE  360 (643)
Q Consensus       288 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~y-------NqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le  360 (643)
                      ++..+++.|.++..+.-.+...+.......+.|-.+.+.|....       ........+|..+.+.++.++......+.
T Consensus       259 ~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l~~~~~~l~  338 (880)
T PRK02224        259 EIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQ  338 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444445555554444444444444433322       22222334455555555555544444443


Q ss_pred             hhH
Q 006482          361 SFR  363 (643)
Q Consensus       361 ~l~  363 (643)
                      .+.
T Consensus       339 ~~~  341 (880)
T PRK02224        339 AHN  341 (880)
T ss_pred             HHH
Confidence            333

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.65  E-value=0.087  Score=62.83  Aligned_cols=236  Identities=22%  Similarity=0.318  Sum_probs=115.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006482          288 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSL-------TDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE  360 (643)
Q Consensus       288 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaL-------t~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le  360 (643)
                      +...|+.+|+++......+...+.....-...+-..-+.+       ..++..-...+..++.+.++++..+...-..++
T Consensus       668 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  747 (1163)
T COG1196         668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELE  747 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566777777777666666655555544444444443333       344444444444444444444444444444444


Q ss_pred             hhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHH-------HhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhH
Q 006482          361 SFRNEYANVRLECNAADERAKILASEVIGLEEKALR-------LRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQ  433 (643)
Q Consensus       361 ~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~-------LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~  433 (643)
                      .+..+++..+.+.....+.-..+-..+..|++++..       +...--.++.++..+..++...+.++...+..+..+.
T Consensus       748 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  827 (1163)
T COG1196         748 ELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLE  827 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444333333333333333333333333333332       3222223334444444444444555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCcccccccccccccccccCccccCCCCCcccCCCCCCCCCCCCCCCCcc
Q 006482          434 STIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPES  513 (643)
Q Consensus       434 s~i~aLQEEKklLqskLRka~~~gk~~~~~k~~~~~kDASTSTdDLai~d~~~~sSn~e~~~s~s~~~~~~~~~P~~P~~  513 (643)
                      ..|+.++++...++.++......-....            ...+.+                                  
T Consensus       828 ~ei~~l~~~~~~~~~~~~~l~~~~~~~~------------~~~~~~----------------------------------  861 (1163)
T COG1196         828 QEIEELEEEIEELEEKLDELEEELEELE------------KELEEL----------------------------------  861 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHH------------HHHHHH----------------------------------
Confidence            5555555555555555443322111000            000000                                  


Q ss_pred             ccccccCccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHh
Q 006482          514 GRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQ  578 (643)
Q Consensus       514 G~~~l~~~~vsIp~DQlRmI~nInaLisEla~Ere~l~~aL~~es~~~s~Lk~lN~ELsrKLE~q  578 (643)
                               -.--......+..+++-|.++..+++.+-..|+.......+++.....+..++...
T Consensus       862 ---------~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l  917 (1163)
T COG1196         862 ---------KEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEEL  917 (1163)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     00011223356677777777777777777777777777777777777777666643

>PRK02224 chromosome segregation protein; Provisional

Probab=97.56  E-value=0.014  Score=66.20  Aligned_cols=119  Identities=19%  Similarity=0.251  Sum_probs=65.5

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHH
Q 006482          327 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER  406 (643)
Q Consensus       327 Lt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKler  406 (643)
                      +.+..+.....+.......+.|++++..-...+.....+++.+..+..++.++...+..++-.|+.+.-++. .      
T Consensus       521 l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le-~------  593 (880)
T PRK02224        521 LEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-R------  593 (880)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-H------
Confidence            333344444444555555555666655555555555566666667777777777777777777777766664 3      


Q ss_pred             HHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006482          407 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA  453 (643)
Q Consensus       407 ele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka  453 (643)
                       +..+..++...+..+..++.++..+....+.++++..-+..++...
T Consensus       594 -~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l  639 (880)
T PRK02224        594 -IRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKREL  639 (880)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             3333344444444444444444444444445555555555555443

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=97.54  E-value=0.042  Score=68.87  Aligned_cols=238  Identities=23%  Similarity=0.322  Sum_probs=140.7

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-------HHHHHhhhhHHHHHHHhhhhhhHHHHHHH
Q 006482          310 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK-------VQLVELESFRNEYANVRLECNAADERAKI  382 (643)
Q Consensus       310 L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~-------aQ~~~le~l~aErdaArle~~aA~ERak~  382 (643)
                      ++.+.++-+.|..+...+-..+..-...+.++++....|+.+..       .-...++.+-..|+.++++.+++..+-+.
T Consensus       889 ~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~  968 (1930)
T KOG0161|consen  889 LAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKN  968 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555666666666666666666666655554444433333       33334444455566788888888888888


Q ss_pred             HHHHHHhHHHHHHHHhhhhhhhHHHHh----hhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH----HHHHH---HHHHHH
Q 006482          383 LASEVIGLEEKALRLRSNELKLERQLE----NSQSEISSYKKKISSLEKERQDFQSTIEALQ----EEKKM---MQSKLR  451 (643)
Q Consensus       383 LAaEVV~LEEk~l~LRS~eLKlerele----~l~~E~~s~~~qlsslekeR~~l~s~i~aLQ----EEKkl---LqskLR  451 (643)
                      |-.|+..|++.+-+|    .|..|+++    .+...+-..+.++..+.|-...|...++-|+    +|++.   +....|
T Consensus       969 l~~e~~~~~e~~~kL----~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~r 1044 (1930)
T KOG0161|consen  969 LEEEINSLDENISKL----SKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKR 1044 (1930)
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888887755    33333333    3556666677777777777777776666554    34433   333344


Q ss_pred             hhhCCCCCcCCCCCcccccccccccccccccCccccCCCCCcccCCCCCCCCCCCCCCCCccccccccCccccchhhHHH
Q 006482          452 KASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMR  531 (643)
Q Consensus       452 ka~~~gk~~~~~k~~~~~kDASTSTdDLai~d~~~~sSn~e~~~s~s~~~~~~~~~P~~P~~G~~~l~~~~vsIp~DQlR  531 (643)
                      +.-+.-+...   .+  -.+.-..-++|..    .     .  ...   +..+         |++      -.-.+|.-+
T Consensus      1045 kle~el~~~~---e~--~~~~~~~~~el~~----~-----l--~kk---e~El---------~~l------~~k~e~e~~ 1090 (1930)
T KOG0161|consen 1045 KLEGELKDLQ---ES--IEELKKQKEELDN----Q-----L--KKK---ESEL---------SQL------QSKLEDEQA 1090 (1930)
T ss_pred             HHHHHHHHhh---hH--HHHHHHHHHHHHH----H-----H--HHH---HHHH---------HHH------HHHhhHHHH
Confidence            4433221100   00  0001111111100    0     0  000   0000         111      134456667


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHHHHH
Q 006482          532 MIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELL  585 (643)
Q Consensus       532 mI~nInaLisEla~Ere~l~~aL~~es~~~s~Lk~lN~ELsrKLE~qTQRLELl  585 (643)
                      ++..+--.|.||+....+|-.-|..+....+++.....||.+.||+.+.+||.+
T Consensus      1091 ~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1091 EVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777788888888888888888888888888888888888888888888888877

>PRK11637 AmiB activator; Provisional

Probab=97.49  E-value=0.041  Score=58.49  Aligned_cols=79  Identities=13%  Similarity=0.149  Sum_probs=54.3

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006482          284 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF  362 (643)
Q Consensus       284 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l  362 (643)
                      ...++...|++-|+++-.+.-.++..+.....-.+.|..+-..+...+|+....+.+++.++++++.+|......++..
T Consensus        44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~  122 (428)
T PRK11637         44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ  122 (428)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556677777777777777777777776666666667777777777777777777777777766666666655554444

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=97.46  E-value=0.25  Score=57.24  Aligned_cols=172  Identities=22%  Similarity=0.300  Sum_probs=123.3

Q ss_pred             cccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHH-------------
Q 006482          278 HGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSE-------------  344 (643)
Q Consensus       278 ~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~-------------  344 (643)
                      -|-+|--.-.++..|+|-+.-+-.||-+|...|+.+|.-.+.=..+-+..+++.|..+..|++|+..             
T Consensus       256 ~DLfSEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~  335 (717)
T PF09730_consen  256 SDLFSELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSE  335 (717)
T ss_pred             chhhhhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcc
Confidence            4667777788999999999999999999999999999988888888888888888888888888871             


Q ss_pred             ------------------HHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHH
Q 006482          345 ------------------MEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER  406 (643)
Q Consensus       345 ------------------mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKler  406 (643)
                                        ++-|+....+-..++..++.|..+.+..+....++.+.   +-..++.++..|......+++
T Consensus       336 ~~~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~---ek~~~~~e~q~L~ekl~~lek  412 (717)
T PF09730_consen  336 KERDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQ---EKDRLESEVQNLKEKLMSLEK  412 (717)
T ss_pred             cccccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence                              24455555555566666777777777666666665543   222333444444444444466


Q ss_pred             HHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 006482          407 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK  452 (643)
Q Consensus       407 ele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRk  452 (643)
                      ....-...+..+++.+..+.+-.++.+..+.+.|+|-..+-.-|=+
T Consensus       413 ~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAq  458 (717)
T PF09730_consen  413 SSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQ  458 (717)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            5555566777888888888888888888888888777555444433

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.40  E-value=0.031  Score=66.53  Aligned_cols=29  Identities=28%  Similarity=0.488  Sum_probs=18.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006482          286 NEDFAALEQHIEDLTQEKFALQRSLEASR  314 (643)
Q Consensus       286 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~  314 (643)
                      ...+..++.+|.+++..--.+.+.++...
T Consensus       694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  722 (1163)
T COG1196         694 KNELRSLEDLLEELRRQLEELERQLEELK  722 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677788888888766666655544433

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.25  E-value=0.063  Score=60.36  Aligned_cols=97  Identities=24%  Similarity=0.289  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 006482          292 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL  371 (643)
Q Consensus       292 LqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArl  371 (643)
                      ||..|++.-+||-.|+.....-.+-+++|-.+++.|-.       .+...+.++++|+++.+.-....+.+..|++-...
T Consensus       141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~-------eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~  213 (546)
T PF07888_consen  141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEA-------ELEQEEEEMEQLKQQQKELTESSEELKEERESLKE  213 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78899999899999887776666655555555555544       45555556666666655555667788899999888


Q ss_pred             hhhhHHHHHHHHHHHHHhHHHHHH
Q 006482          372 ECNAADERAKILASEVIGLEEKAL  395 (643)
Q Consensus       372 e~~aA~ERak~LAaEVV~LEEk~l  395 (643)
                      ...++..|.+.|-.++..|..+..
T Consensus       214 q~~e~~~ri~~LEedi~~l~qk~~  237 (546)
T PF07888_consen  214 QLAEARQRIRELEEDIKTLTQKEK  237 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999888874

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>TIGR00606 rad50 rad50

Probab=97.22  E-value=0.075  Score=64.06  Aligned_cols=166  Identities=14%  Similarity=0.231  Sum_probs=103.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHH---HHhhHHHHHHHHHHHHHHHHHHHHHH--
Q 006482          286 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSL---TDSY---NQQRSVVNQLKSEMEKLQEEIKVQLV--  357 (643)
Q Consensus       286 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaL---t~~y---NqQ~~~v~qLk~~mE~Lq~Ei~aQ~~--  357 (643)
                      ..++..|++.|.+++.+.-.+...|+......+.+..+-..+   ....   .+....+..++.++++|..++..+..  
T Consensus       743 ~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~  822 (1311)
T TIGR00606       743 EKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDR  822 (1311)
T ss_pred             HhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence            356777888888888887777777777777777776666433   2222   44445566677777776665554332  


Q ss_pred             -------HhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHH----------HHhhhHHHHHHHHH
Q 006482          358 -------ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER----------QLENSQSEISSYKK  420 (643)
Q Consensus       358 -------~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKler----------ele~l~~E~~s~~~  420 (643)
                             .+..+..+++..+.+.....+....+-.++-.|++++..++...+++..          +++.+..++..++.
T Consensus       823 s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~  902 (1311)
T TIGR00606       823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIR  902 (1311)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   2334445555555555556777778888888887777777766665543          44445555566666


Q ss_pred             HhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 006482          421 KISSLEKERQDFQSTIEALQEEKKMMQSKLR  451 (643)
Q Consensus       421 qlsslekeR~~l~s~i~aLQEEKklLqskLR  451 (643)
                      .+..++++-..+...++.++.++..+..+.+
T Consensus       903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  933 (1311)
T TIGR00606       903 EIKDAKEQDSPLETFLEKDQQEKEELISSKE  933 (1311)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666666655554444333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=97.20  E-value=0.032  Score=57.88  Aligned_cols=45  Identities=20%  Similarity=0.327  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHH
Q 006482          294 QHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVV  338 (643)
Q Consensus       294 qhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v  338 (643)
                      .|++.|-.++-.|...+++...+...|.....+|....+.-...+
T Consensus       156 ~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~  200 (325)
T PF08317_consen  156 ENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLV  200 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444444444444444433333

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.18  E-value=0.75  Score=53.21  Aligned_cols=168  Identities=21%  Similarity=0.274  Sum_probs=82.9

Q ss_pred             CCchhhHHHHHHHHHHHHHHH---HHHHHHHHHH-----------HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHH
Q 006482          283 TKHNEDFAALEQHIEDLTQEK---FALQRSLEAS-----------RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKL  348 (643)
Q Consensus       283 ~~~~~~faaLqqhIeDLT~EK---faLqR~L~~s-----------~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~L  348 (643)
                      ....+....||+-|+-|-.|=   ..+...|..+           +--.++|-.||+.|-.+++.....-.+-|.-|..|
T Consensus       414 ~~~~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~L  493 (697)
T PF09726_consen  414 NSEPDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQL  493 (697)
T ss_pred             ccChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667778888777664441   1111122111           22245577788888888877666555555555554


Q ss_pred             HHHHHH---HHHHhh-hhHHHHHHHhhhhh-hHH----------HHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHH
Q 006482          349 QEEIKV---QLVELE-SFRNEYANVRLECN-AAD----------ERAKILASEVIGLEEKALRLRSNELKLERQLENSQS  413 (643)
Q Consensus       349 q~Ei~a---Q~~~le-~l~aErdaArle~~-aA~----------ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~  413 (643)
                      ++.++.   ++..+| .|.+||.+-+.+.. +|.          |-+-.+-.-+-.||.++.+||.+.-..|.++..+..
T Consensus       494 EkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~  573 (697)
T PF09726_consen  494 EKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELES  573 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            443332   223332 33555533222111 110          111122223344555555555433333333444444


Q ss_pred             HHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 006482          414 EISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL  450 (643)
Q Consensus       414 E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskL  450 (643)
                      |+..++.....-++|-..|.+.+.+|||+..+|..-|
T Consensus       574 ~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sL  610 (697)
T PF09726_consen  574 ELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSL  610 (697)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            4444444322235666777788888888876665443

; GO: 0016021 integral to membrane

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.18  E-value=0.061  Score=64.12  Aligned_cols=136  Identities=16%  Similarity=0.257  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHH-------HHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHH
Q 006482          311 EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEK-------LQEEIKVQLVELESFRNEYANVRLECNAADERAKIL  383 (643)
Q Consensus       311 ~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~-------Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~L  383 (643)
                      ...++-.+..-..++++..+++.--.++++++++.+.       +.+.++..+.+...++.++..+.....+...+-..|
T Consensus       298 ~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l  377 (1074)
T KOG0250|consen  298 DTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRL  377 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444555556666666666666666666555444       444444455555556667777777777777778888


Q ss_pred             HHHHHhHHHHH-HHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHH
Q 006482          384 ASEVIGLEEKA-LRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM  446 (643)
Q Consensus       384 AaEVV~LEEk~-l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklL  446 (643)
                      -..|..++++. ..+-+.-.+.+.+++.|..|++.++-++.+|..+.+++..-+...+||+-..
T Consensus       378 ~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i  441 (1074)
T KOG0250|consen  378 EKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHI  441 (1074)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            88888888887 6666777788888899999999999999999999999888888888888443

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.10  E-value=0.082  Score=59.49  Aligned_cols=62  Identities=24%  Similarity=0.351  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 006482          290 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE  351 (643)
Q Consensus       290 aaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E  351 (643)
                      ..|++-...|-++.-.|++.|..+++-++.|..++..++...-........|+.+.+.+...
T Consensus       160 ~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~r  221 (546)
T PF07888_consen  160 EQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQR  221 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555566666777888888888888888888888776555444444444444444333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK11637 AmiB activator; Provisional

Probab=97.05  E-value=0.18  Score=53.80  Aligned_cols=76  Identities=18%  Similarity=0.245  Sum_probs=48.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006482          287 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF  362 (643)
Q Consensus       287 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l  362 (643)
                      .++..+++-|.++..++-.++..|....+=.+.+..+-..+....+.....+.+++.++++++.+|..+...+...
T Consensus        54 ~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~r  129 (428)
T PRK11637         54 QDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQ  129 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566677777777777777766666666555555566666666666666666666666666666666655554433

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.02  E-value=0.14  Score=55.11  Aligned_cols=67  Identities=18%  Similarity=0.283  Sum_probs=30.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006482          287 EDFAALEQHIEDLTQEKFALQRSLEASRALSE----SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK  353 (643)
Q Consensus       287 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~e----sLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~  353 (643)
                      +.+..+++.|+.+..+.-.++-.++..++..+    .+......+...|+......++++.++++++.+|.
T Consensus       174 ~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~  244 (562)
T PHA02562        174 DKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELL  244 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555555554444443322222    22233344444455555555555555555555443

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=96.97  E-value=0.051  Score=68.15  Aligned_cols=156  Identities=21%  Similarity=0.259  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHH--------------HHHHHHHHHH
Q 006482          293 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKL--------------QEEIKVQLVE  358 (643)
Q Consensus       293 qqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~L--------------q~Ei~aQ~~~  358 (643)
                      .|+++++-++|--|+.-|+..++..+-+...+..|-...|+-.+.+..+..++++.              ..-+.--.-.
T Consensus      1371 ~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~ 1450 (1930)
T KOG0161|consen 1371 LQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKK 1450 (1930)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999998666655555555444              2333333333


Q ss_pred             hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHH
Q 006482          359 LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA  438 (643)
Q Consensus       359 le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~a  438 (643)
                      .+.+..|+|+|+.+..+.....+.+.-.+-.+=+.+-++       +++-..+..++..+..++..+.|..+.|+....+
T Consensus      1451 ~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l-------~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~ 1523 (1930)
T KOG0161|consen 1451 LEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEEL-------RRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRR 1523 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445567777777776666666666655554444433333       4555567777777777777777777777777788


Q ss_pred             HHHHHHHHHHHHHhhhC
Q 006482          439 LQEEKKMMQSKLRKASG  455 (643)
Q Consensus       439 LQEEKklLqskLRka~~  455 (643)
                      +..||.-||.+|-.+-+
T Consensus      1524 le~e~~elQ~aLeElE~ 1540 (1930)
T KOG0161|consen 1524 LEQEKEELQAALEELEA 1540 (1930)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88887777777766644

>PHA02562 46 endonuclease subunit; Provisional

Probab=96.95  E-value=0.2  Score=53.86  Aligned_cols=160  Identities=17%  Similarity=0.265  Sum_probs=87.4

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006482          284 KHNEDFAALEQHIEDLTQEKFALQRSLEASRA----LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL  359 (643)
Q Consensus       284 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~----l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l  359 (643)
                      .-..+...|+..|+.+..+--.+++.+...++    ..+.|-.+-+.+...+++-..++..|++++..+..++.....+|
T Consensus       178 e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L  257 (562)
T PHA02562        178 ELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAAL  257 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence            34556667777777777776666655555444    34567777778888888888888888777777765544433333


Q ss_pred             hhhHHHHHHHhhh----------------hh--------------hHHHHHHHHHHHHHhHHHHHH---HHhhhhhhhHH
Q 006482          360 ESFRNEYANVRLE----------------CN--------------AADERAKILASEVIGLEEKAL---RLRSNELKLER  406 (643)
Q Consensus       360 e~l~aErdaArle----------------~~--------------aA~ERak~LAaEVV~LEEk~l---~LRS~eLKler  406 (643)
                      ..+..++..++..                |.              .....-+.|..++-.|++++.   +.+..--++++
T Consensus       258 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~  337 (562)
T PHA02562        258 NKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSK  337 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333222221                11              111222333333333333333   11112223345


Q ss_pred             HHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHH
Q 006482          407 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK  443 (643)
Q Consensus       407 ele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEK  443 (643)
                      .+..+..++..++..+.++.+++..++..|+.|+++.
T Consensus       338 ~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~  374 (562)
T PHA02562        338 KLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEF  374 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            5555666666666666666666666666666666443

>TIGR00606 rad50 rad50

Probab=96.86  E-value=0.096  Score=63.16  Aligned_cols=77  Identities=13%  Similarity=0.188  Sum_probs=38.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 006482          288 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA  367 (643)
Q Consensus       288 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErd  367 (643)
                      ++..|++-|.++..+|..+...+++-    .+|..+-..|...-++++..+..++.+++-|+.++..-...++.++.+..
T Consensus       858 eI~~Lq~ki~el~~~klkl~~~l~~r----~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  933 (1311)
T TIGR00606       858 QIQHLKSKTNELKSEKLQIGTNLQRR----QQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKE  933 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444433322    23333444455555666666666666666666665555555555544433


Q ss_pred             H
Q 006482          368 N  368 (643)
Q Consensus       368 a  368 (643)
                      .
T Consensus       934 ~  934 (1311)
T TIGR00606       934 T  934 (1311)
T ss_pred             H
Confidence            3

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=96.81  E-value=0.68  Score=52.89  Aligned_cols=228  Identities=22%  Similarity=0.281  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh----
Q 006482          294 QHIEDLTQEKFALQRSLEASRALSESLAAENSS----------LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL----  359 (643)
Q Consensus       294 qhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsa----------Lt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l----  359 (643)
                      +.++.|..+|..+.|+|.+=++|-++|+.=-.+          ||..-----++..+|+..+.+|+.++..-...+    
T Consensus       143 kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~  222 (617)
T PF15070_consen  143 KLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKS  222 (617)
T ss_pred             HHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            445566667788889999999988888764333          333322223333444444444444433333333    


Q ss_pred             ---hhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHH-HhhhHHHHHHHHHHhhhHHHhhhhhHHH
Q 006482          360 ---ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQ-LENSQSEISSYKKKISSLEKERQDFQST  435 (643)
Q Consensus       360 ---e~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlere-le~l~~E~~s~~~qlsslekeR~~l~s~  435 (643)
                         ..+..+||..---......-...|++|--.|-.+++.        +.+ ++.++.+-...+..++-+-+|=+..+-.
T Consensus       223 qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~l~--------Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~  294 (617)
T PF15070_consen  223 QEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQLLQ--------QTQLMDRLQHEESQGKVQLEMAHQELQEAQEH  294 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence               3333333321111111111124555555555444331        111 2233333333333444444444555667


Q ss_pred             HHHHHHHHHHHHHHHHhhhCCCCCcCCCCCcccccccccccccccccCccccCCCCCcccCCCCCCCCCCCCCCCCcccc
Q 006482          436 IEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGR  515 (643)
Q Consensus       436 i~aLQEEKklLqskLRka~~~gk~~~~~k~~~~~kDASTSTdDLai~d~~~~sSn~e~~~s~s~~~~~~~~~P~~P~~G~  515 (643)
                      ++++..+-..|+..|+.++..|.-.-.        +       .    +   +.+.++              |       
T Consensus       295 Lea~~qqNqqL~~qls~~~~~~eg~~~--------~-------~----~---~~~ee~--------------~-------  331 (617)
T PF15070_consen  295 LEALSQQNQQLQAQLSLMALPGEGDGL--------E-------S----E---SEEEEA--------------P-------  331 (617)
T ss_pred             HHHHHhhhHHHHHHHHhhcCCCCCccc--------c-------c----c---cccccc--------------c-------
Confidence            777888888889999888775522100        0       0    0   000000              1       


Q ss_pred             ccccCccccchhhH---HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHH
Q 006482          516 LALEGLAVNIPHDQ---MRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLE  576 (643)
Q Consensus       516 ~~l~~~~vsIp~DQ---lRmI~nInaLisEla~Ere~l~~aL~~es~~~s~Lk~lN~ELsrKLE  576 (643)
                          -...+||+|.   =+|...+|+.+..++.||.+|...|......|..|...-+.+..+.+
T Consensus       332 ----~~~~~ipEd~es~E~m~~f~~~a~~~~eeEr~~L~~qL~eqk~~~q~L~h~va~~q~e~e  391 (617)
T PF15070_consen  332 ----QPMPSIPEDLESREAMVEFFNSALAQAEEERARLRRQLEEQKVQCQHLAHQVASAQKEPE  391 (617)
T ss_pred             ----CcCcccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence                0012566663   46788999999999999999999999988888777666555544443

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=96.72  E-value=0.43  Score=48.89  Aligned_cols=48  Identities=13%  Similarity=0.277  Sum_probs=22.0

Q ss_pred             hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 006482          323 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR  370 (643)
Q Consensus       323 ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaAr  370 (643)
                      +...+..+.+.-...+.++..+++.++.+++.....++.++.+.+.++
T Consensus       131 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~  178 (423)
T TIGR01843       131 QQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVIS  178 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333344444444445555555555555444444444444444444

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=96.70  E-value=0.54  Score=55.67  Aligned_cols=64  Identities=22%  Similarity=0.256  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 006482          291 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV  354 (643)
Q Consensus       291 aLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~a  354 (643)
                      ..+|..-+....|+.+-+.+..+|+..+++-.-+.+|-=.+++|.-...+-..+-|||++|.+-
T Consensus       334 ~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaq  397 (980)
T KOG0980|consen  334 QIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQ  397 (980)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            4567777888899999999999999999999999999999999999998888888888887543

>smart00787 Spc7 Spc7 kinetochore protein

Probab=96.70  E-value=0.15  Score=53.66  Aligned_cols=36  Identities=25%  Similarity=0.362  Sum_probs=15.6

Q ss_pred             HHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH
Q 006482          405 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  440 (643)
Q Consensus       405 erele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQ  440 (643)
                      +.+++.+...|.....+...+..+=++++..++.++
T Consensus       231 ~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r  266 (312)
T smart00787      231 EEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCR  266 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            444444444444444444444444444444444433

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.64  E-value=0.32  Score=45.92  Aligned_cols=125  Identities=19%  Similarity=0.301  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHH
Q 006482          313 SRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE  392 (643)
Q Consensus       313 s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEE  392 (643)
                      +.+-++.|...+-.|-+++-+....|..|+..+.+|+.+|..-...|..++.-.+..-.....    +-.|-.-|-.||+
T Consensus        12 a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~----~E~l~rriq~LEe   87 (143)
T PF12718_consen   12 AQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSN----AEQLNRRIQLLEE   87 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh----HHHHHhhHHHHHH
Confidence            334444444444444444444444445555555444444433333333332222211111111    1134444455555


Q ss_pred             HHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHH
Q 006482          393 KALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE  441 (643)
Q Consensus       393 k~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQE  441 (643)
                      .+-+.-..---....|..+...+..++|++.+|+.+|..+..-++.|..
T Consensus        88 ele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~  136 (143)
T PF12718_consen   88 ELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEE  136 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            5544433222233444555566666777777777666666555555543

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=96.63  E-value=2.9  Score=51.51  Aligned_cols=111  Identities=16%  Similarity=0.263  Sum_probs=60.5

Q ss_pred             ccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-----hhHHHHHHHHHHHHHH
Q 006482          275 ENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ-----QRSVVNQLKSEMEKLQ  349 (643)
Q Consensus       275 e~~~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNq-----Q~~~v~qLk~~mE~Lq  349 (643)
                      +-..+|.-+.++.++..|.+-|++|.+-+-.|.+.-++-.+| +.+...    -+.||+     ....+-..+.+++.++
T Consensus       208 ~~l~~~l~~l~~~~i~~l~e~~~~~~~~~~~le~l~~~~~~l-~~i~~~----y~~y~~~~~~~~~~~~~~~~~~~~~~~  282 (1353)
T TIGR02680       208 DALTEALPPLDDDELTDVADALEQLDEYRDELERLEALERAL-RNFLQR----YRRYARTMLRRRATRLRSAQTQYDQLS  282 (1353)
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445677888899999999999988887776665543333333 333322    334444     2233333444445555


Q ss_pred             HHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhH
Q 006482          350 EEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL  390 (643)
Q Consensus       350 ~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~L  390 (643)
                      .++......++....+++.+........++-..+-.|+..|
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l  323 (1353)
T TIGR02680       283 RDLGRARDELETAREEERELDARTEALEREADALRTRLEAL  323 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55444444455555555555544444444444444444443

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PRK09039 hypothetical protein; Validated

Probab=96.63  E-value=0.24  Score=52.28  Aligned_cols=67  Identities=22%  Similarity=0.260  Sum_probs=37.2

Q ss_pred             hhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH
Q 006482          374 NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  440 (643)
Q Consensus       374 ~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQ  440 (643)
                      +++..|+..|..+...+....-+.+.+..+|+.|++.|+..+.+++..|.++++.-.+.+.-|+.|+
T Consensus       112 ~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~  178 (343)
T PRK09039        112 AAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLG  178 (343)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555555555555555666666555555555555555555544444444443

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=96.57  E-value=0.59  Score=51.82  Aligned_cols=124  Identities=27%  Similarity=0.294  Sum_probs=90.4

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhh-------h
Q 006482          330 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE-------L  402 (643)
Q Consensus       330 ~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~e-------L  402 (643)
                      ........+.+.+..++....|+..=...+++|+.|....+.+.....+|-....++|..|+.++.++|+.-       -
T Consensus       282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~  361 (522)
T PF05701_consen  282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEE  361 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhc
Confidence            356667777788888888888888888999999999999999999999999999999999999999998764       1


Q ss_pred             -------hhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006482          403 -------KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA  453 (643)
Q Consensus       403 -------Klerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka  453 (643)
                             .+...|+.+..|.+.+++.......+...+...++...-.-+-++.||+.+
T Consensus       362 ~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa  419 (522)
T PF05701_consen  362 KAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAA  419 (522)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   133444555555555555555555555555555555554445555555544

Several sequences in this family are described as being myosin heavy chain-like.

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=96.53  E-value=0.25  Score=59.83  Aligned_cols=165  Identities=24%  Similarity=0.277  Sum_probs=104.4

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHH---H
Q 006482          285 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ----QRSVVNQLKSEMEKLQEEIKVQL---V  357 (643)
Q Consensus       285 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNq----Q~~~v~qLk~~mE~Lq~Ei~aQ~---~  357 (643)
                      ..+.-+-|++.|+.++.+...|+|   ++.+|++.=..|+......-++    .-..+.+++++|+-+++..+.-.   -
T Consensus       463 ~~~~~keL~e~i~~lk~~~~el~~---~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~  539 (1317)
T KOG0612|consen  463 LEEMDKELEETIEKLKSEESELQR---EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLE  539 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345567899999999999999998   4445544444433322222222    23345556666666655544442   2


Q ss_pred             HhhhhHHHHHHHhhhhhhHHH--------------HHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhh
Q 006482          358 ELESFRNEYANVRLECNAADE--------------RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS  423 (643)
Q Consensus       358 ~le~l~aErdaArle~~aA~E--------------Rak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qls  423 (643)
                      .+.+++.+.+.+.+.+.+..+              +-+.+..++-.+++++-.+-..+.++-++..+++.+.+.++++--
T Consensus       540 kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~  619 (1317)
T KOG0612|consen  540 KVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRT  619 (1317)
T ss_pred             hHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445666666666664444              233344566789999999988889999999999999888888877


Q ss_pred             hHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 006482          424 SLEKERQDFQSTIEALQEEKKMMQSKLRK  452 (643)
Q Consensus       424 slekeR~~l~s~i~aLQEEKklLqskLRk  452 (643)
                      .+...+..++..|.-||+.-+.+...|++
T Consensus       620 ~~~e~~~~l~~~i~sL~~~~~~~~~~l~k  648 (1317)
T KOG0612|consen  620 EISEIIAELKEEISSLEETLKAGKKELLK  648 (1317)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHhhhhHHHH
Confidence            77777776666666666544444333333

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.51  E-value=0.53  Score=48.37  Aligned_cols=102  Identities=24%  Similarity=0.302  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-------HHHHhhhh--HHHH
Q 006482          296 IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV-------QLVELESF--RNEY  366 (643)
Q Consensus       296 IeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~a-------Q~~~le~l--~aEr  366 (643)
                      |..|..+++.|.+-..-.++..+.+-.|-+++-++|=..--.+..++.++-+++.+|+.       -...+.++  .-||
T Consensus        12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~   91 (239)
T COG1579          12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDEREL   91 (239)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence            33445566665555555555555555555555555555555555555555555555443       33333333  5678


Q ss_pred             HHHhhhhhhHHHHHHHHHHHHHhHHHHHHHH
Q 006482          367 ANVRLECNAADERAKILASEVIGLEEKALRL  397 (643)
Q Consensus       367 daArle~~aA~ERak~LAaEVV~LEEk~l~L  397 (643)
                      .+...+...|.+|...|-.|++.|.++.-.+
T Consensus        92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l  122 (239)
T COG1579          92 RALNIEIQIAKERINSLEDELAELMEEIEKL  122 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888899999999999999988887776654

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=96.44  E-value=0.88  Score=46.63  Aligned_cols=40  Identities=20%  Similarity=0.341  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHH
Q 006482          339 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADE  378 (643)
Q Consensus       339 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~E  378 (643)
                      ..++.++++++.++......++.+..+...++.....+.+
T Consensus       140 ~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~  179 (423)
T TIGR01843       140 STLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISE  179 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444455555555445555555555544444444443

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PRK03918 chromosome segregation protein; Provisional

Probab=96.43  E-value=0.69  Score=52.67  Aligned_cols=83  Identities=22%  Similarity=0.266  Sum_probs=37.3

Q ss_pred             HHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHh-----hhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhh
Q 006482          357 VELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR-----SNELKLERQLENSQSEISSYKKKISSLEKERQD  431 (643)
Q Consensus       357 ~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LR-----S~eLKlerele~l~~E~~s~~~qlsslekeR~~  431 (643)
                      ..++.+..++...+..+....+....|..++-.|++++-.++     ...-.++++++.+..++..+++++..++++-..
T Consensus       612 ~~l~~~~~~l~~~~~~l~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~  691 (880)
T PRK03918        612 KELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREE  691 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444455444555555555555555553     333333444444444444444444444444444


Q ss_pred             hHHHHHHH
Q 006482          432 FQSTIEAL  439 (643)
Q Consensus       432 l~s~i~aL  439 (643)
                      +...|+.+
T Consensus       692 l~~~i~~~  699 (880)
T PRK03918        692 IKKTLEKL  699 (880)
T ss_pred             HHHHHHHH
Confidence            44444444

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.39  E-value=0.44  Score=44.98  Aligned_cols=131  Identities=20%  Similarity=0.297  Sum_probs=107.1

Q ss_pred             HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHH
Q 006482          318 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL  397 (643)
Q Consensus       318 esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~L  397 (643)
                      +.|=.|.+.+.+++.+-...+.+|.....+++++|..=.-.+..+-.|.+.++.....|.+.+-....-+...|  .+.-
T Consensus         3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E--~l~r   80 (143)
T PF12718_consen    3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE--QLNR   80 (143)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH--HHHh
Confidence            56777889999999999999999999999999999999999999999999999988888877766665544444  3444


Q ss_pred             hhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 006482          398 RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK  452 (643)
Q Consensus       398 RS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRk  452 (643)
                      |.+.|  |.+|+.+...+..+..++..+.+.-.++.--+.+|..++.-+-.|+-.
T Consensus        81 riq~L--Eeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~ee  133 (143)
T PF12718_consen   81 RIQLL--EEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEE  133 (143)
T ss_pred             hHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence            44444  888999888888999999988888888888888888777666665543

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PRK03918 chromosome segregation protein; Provisional

Probab=96.34  E-value=1.1  Score=51.13  Aligned_cols=27  Identities=15%  Similarity=0.156  Sum_probs=12.2

Q ss_pred             hhhhhHHHHHHHHHHHHHhHHHHHHHH
Q 006482          371 LECNAADERAKILASEVIGLEEKALRL  397 (643)
Q Consensus       371 le~~aA~ERak~LAaEVV~LEEk~l~L  397 (643)
                      ..+..-.++.+.+-.|+..|++++-++
T Consensus       252 ~~~~~l~~~i~~l~~el~~l~~~l~~l  278 (880)
T PRK03918        252 GSKRKLEEKIRELEERIEELKKEIEEL  278 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334444555555555554443

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=96.33  E-value=0.4  Score=53.42  Aligned_cols=147  Identities=19%  Similarity=0.278  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHH
Q 006482          306 LQRSLEASRALSESLAAENSSLTDSYN---QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI  382 (643)
Q Consensus       306 LqR~L~~s~~l~esLa~ENsaLt~~yN---qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~  382 (643)
                      +...|...++..+.|..|-+.|..+|-   .-...+.+++.+++.++.++..-...+..-...|...+-++....++-..
T Consensus       315 l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~lee  394 (569)
T PRK04778        315 LPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEE  394 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            556667777778888888888877763   33556777777888888877766667777777788888888889999999


Q ss_pred             HHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhh--HHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 006482          383 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS--LEKERQDFQSTIEALQEEKKMMQSKLRK  452 (643)
Q Consensus       383 LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlss--lekeR~~l~s~i~aLQEEKklLqskLRk  452 (643)
                      +-.+...+.+.+..||..|..++..++.++..++.+++.+..  +-.--.+....+..++++-+.|..+|.+
T Consensus       395 ie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~  466 (569)
T PRK04778        395 IEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEE  466 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999888888888888888877662  1111123445555556665555554443

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=96.31  E-value=0.052  Score=56.61  Aligned_cols=118  Identities=23%  Similarity=0.328  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 006482          289 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN  368 (643)
Q Consensus       289 faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErda  368 (643)
                      +..|+++++++..|+-.+++-|.+-+               .=......+.++..+++.|++|...-..+|+.+..|++.
T Consensus        11 ~~~l~~~~~~~~~E~~~Y~~fL~~l~---------------~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~   75 (314)
T PF04111_consen   11 LEQLDKQLEQAEKERDTYQEFLKKLE---------------EESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREE   75 (314)
T ss_dssp             ----------------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---------------hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35688899999999999999888776               001123345667777777777766666666666666655


Q ss_pred             HhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHH
Q 006482          369 VRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE  442 (643)
Q Consensus       369 Arle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEE  442 (643)
                                    |..|...||++..++..+|.+       .-.+...+..++....++|+.+..-++.++++
T Consensus        76 --------------l~~el~~le~e~~~l~~eE~~-------~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~  128 (314)
T PF04111_consen   76 --------------LDQELEELEEELEELDEEEEE-------YWREYNELQLELIEFQEERDSLKNQYEYASNQ  128 (314)
T ss_dssp             --------------HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          444555566655555433333       22333444444555555555555554444444

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.18  E-value=0.44  Score=55.04  Aligned_cols=61  Identities=30%  Similarity=0.393  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006482          293 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK  353 (643)
Q Consensus       293 qqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~  353 (643)
                      ...|.-|-.|--.|...|+.+|.+=+.|=..-..|+..=..-...+.+|+.+.|+||..+.
T Consensus       417 ~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~  477 (697)
T PF09726_consen  417 PDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQ  477 (697)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            3567778888888999999999998888887777776555777888888888888887543

; GO: 0016021 integral to membrane

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=96.15  E-value=0.23  Score=46.97  Aligned_cols=64  Identities=27%  Similarity=0.407  Sum_probs=41.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHh
Q 006482          335 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR  398 (643)
Q Consensus       335 ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LR  398 (643)
                      ...+.++..++.++++.+......+..++.++...+.......+|-+.+..++-.+++++..++
T Consensus        87 ~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~  150 (191)
T PF04156_consen   87 QQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ  150 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666666666666666666666666666666666666666666666666666666665

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.05  E-value=1.8  Score=43.03  Aligned_cols=162  Identities=22%  Similarity=0.321  Sum_probs=84.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 006482          287 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY  366 (643)
Q Consensus       287 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr  366 (643)
                      .+++.|+.+|+++..|--.|.+---++.+--.-.-+.+..|-+--..-...|-.|+..+.+.+....+---.+-..-+|.
T Consensus        19 n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el   98 (194)
T PF15619_consen   19 NELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEEL   98 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46778888888888888777666656554444444444444444444444455555555444443322222222222222


Q ss_pred             HHHhhhhhh---------HHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHH
Q 006482          367 ANVRLECNA---------ADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE  437 (643)
Q Consensus       367 daArle~~a---------A~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~  437 (643)
                      -..+-.+.+         =.|| ..|..+|-.++.++..---.--.|+++++-..   ..+.+++.+-.+--..++..+.
T Consensus        99 ~k~~~~l~~L~~L~~dknL~eR-eeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~---k~~~rql~~e~kK~~~~~~~~~  174 (194)
T PF15619_consen   99 LKTKDELKHLKKLSEDKNLAER-EELQRKLSQLEQKLQEKEKKIQELEKQLELEN---KSFRRQLASEKKKHKEAQEEVK  174 (194)
T ss_pred             HHHHHHHHHHHHHHHcCCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHH
Confidence            111111111         1122 22333444444443332222223344443333   5566666666666677888999


Q ss_pred             HHHHHHHHHHHHHHh
Q 006482          438 ALQEEKKMMQSKLRK  452 (643)
Q Consensus       438 aLQEEKklLqskLRk  452 (643)
                      .|++|-..|+.+|..
T Consensus       175 ~l~~ei~~L~~klkE  189 (194)
T PF15619_consen  175 SLQEEIQRLNQKLKE  189 (194)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998864

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=96.05  E-value=1.9  Score=43.41  Aligned_cols=158  Identities=22%  Similarity=0.320  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 006482          289 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYN---QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE  365 (643)
Q Consensus       289 faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yN---qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aE  365 (643)
                      ++-|+.-=..|+.|=-.|+|.++..-+.+..|+.|+..|-..+=   +--.....|++++|.|+..       +..+-++
T Consensus        10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~-------~~~lEE~   82 (193)
T PF14662_consen   10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTL-------AKSLEEE   82 (193)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence            44556566667788888999999999999999999888876653   2223344556666666654       2344444


Q ss_pred             HHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHh---------------------hh
Q 006482          366 YANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKI---------------------SS  424 (643)
Q Consensus       366 rdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~ql---------------------ss  424 (643)
                      +.-..-.|-....-.+.|.++|-.|.++-.++-.+.=++.+..+.|..+...+.+||                     ..
T Consensus        83 ~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~e  162 (193)
T PF14662_consen   83 NRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEE  162 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            444444444555556777778877777766665555555555555544444444444                     22


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006482          425 LEKERQDFQSTIEALQEEKKMMQSKLRKA  453 (643)
Q Consensus       425 lekeR~~l~s~i~aLQEEKklLqskLRka  453 (643)
                      +.+-=....++++.|.-||.+|...|+++
T Consensus       163 L~~~ieEy~~~teeLR~e~s~LEeql~q~  191 (193)
T PF14662_consen  163 LKKTIEEYRSITEELRLEKSRLEEQLSQM  191 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            22222334455666667777777777654

>PRK09039 hypothetical protein; Validated

Probab=96.05  E-value=1.4  Score=46.65  Aligned_cols=57  Identities=19%  Similarity=0.261  Sum_probs=30.7

Q ss_pred             hHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhH
Q 006482          362 FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL  425 (643)
Q Consensus       362 l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlssl  425 (643)
                      +..++++.+..++++.-....|-.||-.|++++-.+       +.+|..+..+....+.++..+
T Consensus       121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~l-------e~~L~~ae~~~~~~~~~i~~L  177 (343)
T PRK09039        121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAAL-------EAALDASEKRDRESQAKIADL  177 (343)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence            346666666666666665555555555555554443       444444444444444444443

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=95.97  E-value=0.82  Score=46.34  Aligned_cols=115  Identities=23%  Similarity=0.272  Sum_probs=66.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 006482          288 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA  367 (643)
Q Consensus       288 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErd  367 (643)
                      -+..|+|+|.|+-.+       |.+++.-+.++-+.--.+-++||+....+..++..-+          .+|..=..+.+
T Consensus        25 p~~~l~Q~ird~~~~-------l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~----------~Al~~g~E~LA   87 (225)
T COG1842          25 PEKMLEQAIRDMESE-------LAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAE----------LALQAGNEDLA   87 (225)
T ss_pred             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHCCCHHHH
Confidence            348999999998655       5555544444444555566677665555444443321          11111111111


Q ss_pred             HHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhH
Q 006482          368 NVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL  425 (643)
Q Consensus       368 aArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlssl  425 (643)
                            ..|-+|-+.|.-.+-.++..+.+++....++++.+..|...|..++.+...+
T Consensus        88 ------r~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l  139 (225)
T COG1842          88 ------REALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEAL  139 (225)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  3445556666666666666666666677777777777777777777666643

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=95.97  E-value=2.1  Score=43.23  Aligned_cols=35  Identities=31%  Similarity=0.373  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHH
Q 006482          538 ALISELALEKEELVQALSSELAQSSKLKDLNNELS  572 (643)
Q Consensus       538 aLisEla~Ere~l~~aL~~es~~~s~Lk~lN~ELs  572 (643)
                      +.|..++.|...+...+..-...+.+|-+.+.-|.
T Consensus       262 ~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld  296 (312)
T PF00038_consen  262 AEIAELEEELAELREEMARQLREYQELLDVKLALD  296 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            34555555555555555555555555555555444

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK10361 DNA recombination protein RmuC; Provisional

Probab=95.94  E-value=0.77  Score=51.22  Aligned_cols=128  Identities=13%  Similarity=0.230  Sum_probs=78.0

Q ss_pred             HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhh----hHHHHHHHHHHHHHh
Q 006482          314 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECN----AADERAKILASEVIG  389 (643)
Q Consensus       314 ~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~----aA~ERak~LAaEVV~  389 (643)
                      +.+.+.|+.....+. ++++......++..++.++++++..+...+..+.+..++.|....    .-.+--+.|..|--.
T Consensus        39 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~  117 (475)
T PRK10361         39 EEMVAELSAAKQQIT-QSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFEN  117 (475)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444445555555555 455555555566666666666655555555555444333332221    122223456667777


Q ss_pred             HHHHHHHHhhhhhhhHHH------HhhhHHHHHHHHHHhhhHH----HhhhhhHHHHHHHHHH
Q 006482          390 LEEKALRLRSNELKLERQ------LENSQSEISSYKKKISSLE----KERQDFQSTIEALQEE  442 (643)
Q Consensus       390 LEEk~l~LRS~eLKlere------le~l~~E~~s~~~qlssle----keR~~l~s~i~aLQEE  442 (643)
                      |=.++++-++..+.-.++      |.=++..+..++++|..+.    ++|..|...|..|++-
T Consensus       118 LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~  180 (475)
T PRK10361        118 LANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQL  180 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777788777777764443      3448889999999999887    4577888888777653

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.81  E-value=2.1  Score=44.72  Aligned_cols=59  Identities=19%  Similarity=0.308  Sum_probs=28.4

Q ss_pred             ccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhhhHHHHHHHHhhHHHHHHH
Q 006482          277 QHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASR--------------ALSESLAAENSSLTDSYNQQRSVVNQLK  342 (643)
Q Consensus       277 ~~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~--------------~l~esLa~ENsaLt~~yNqQ~~~v~qLk  342 (643)
                      |.+||+.+.+.-         .+-...|.+.+...+.+              .|-+.|...-+.|-..+..-...+..+.
T Consensus       106 f~EY~~a~~d~r---------~~m~~q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~  176 (325)
T PF08317_consen  106 FREYYTADPDMR---------LLMDNQFQLVKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLD  176 (325)
T ss_pred             HHHHHcCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788888754321         22233445554444433              3444555555555555544444443333


Q ss_pred             HH
Q 006482          343 SE  344 (643)
Q Consensus       343 ~~  344 (643)
                      .-
T Consensus       177 ~~  178 (325)
T PF08317_consen  177 EL  178 (325)
T ss_pred             HH
Confidence            33

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=95.80  E-value=1.5  Score=49.01  Aligned_cols=165  Identities=15%  Similarity=0.225  Sum_probs=120.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 006482          285 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN  364 (643)
Q Consensus       285 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~a  364 (643)
                      -..++..|++.|.+.-.-=-.|  .|..+.+.++.+..+-+.|.+.+..-...-..+...+..+...+....-.+..+..
T Consensus       254 i~~~i~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~  331 (569)
T PRK04778        254 IEKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKE  331 (569)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            4677888887777732111111  35677788888888888888888888777788888888888888888888889999


Q ss_pred             HHHHHhhhhh---hHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHH
Q 006482          365 EYANVRLECN---AADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE  441 (643)
Q Consensus       365 ErdaArle~~---aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQE  441 (643)
                      |.+..++.+.   .-.++.+.+..++-.|++++..+.-.--+.......+..+...+.+++..+++++..+...|+.|+.
T Consensus       332 Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk  411 (569)
T PRK04778        332 EIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRK  411 (569)
T ss_pred             HHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999888854   3467788888888888888886644444444445667777778888888888888888888888775


Q ss_pred             HHHHHHHHHH
Q 006482          442 EKKMMQSKLR  451 (643)
Q Consensus       442 EKklLqskLR  451 (643)
                      +-..+..+|.
T Consensus       412 ~E~eAr~kL~  421 (569)
T PRK04778        412 DELEAREKLE  421 (569)
T ss_pred             HHHHHHHHHH
Confidence            5444444333

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.77  E-value=0.041  Score=53.13  Aligned_cols=130  Identities=25%  Similarity=0.299  Sum_probs=27.4

Q ss_pred             hhHHHHHHHHhhHHHHHHHHHHHHHHHHH----------------------HHHHHHhhhhHHHHHHHhhhhhhHHHHHH
Q 006482          324 NSSLTDSYNQQRSVVNQLKSEMEKLQEEI----------------------KVQLVELESFRNEYANVRLECNAADERAK  381 (643)
Q Consensus       324 NsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei----------------------~aQ~~~le~l~aErdaArle~~aA~ERak  381 (643)
                      |..|...||+....+..|+..-..|+.+.                      ..-...+..+..|...+...|..-..|-.
T Consensus        19 ~~~li~ay~~L~d~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~   98 (194)
T PF08614_consen   19 FAELIDAYNRLADRTSLLKAENEQLQPEAESLPSSSSSSPSESGSVSSAQISSLEQKLAKLQEELAELYRSKGELAQQLV   98 (194)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34566666666666666666655555431                      11112233345555555555555555544


Q ss_pred             HHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006482          382 ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA  453 (643)
Q Consensus       382 ~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka  453 (643)
                      .+-.++-.|+.++......--.++.++..+..++..++..+....|.=+.|++.+.+||-+--++..|+++.
T Consensus        99 ~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l  170 (194)
T PF08614_consen   99 ELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKL  170 (194)
T ss_dssp             ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444333333444444444444444555555444444455555555555555555554443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=95.75  E-value=0.49  Score=48.61  Aligned_cols=117  Identities=26%  Similarity=0.334  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHh---------hhhhhhHHH
Q 006482          337 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR---------SNELKLERQ  407 (643)
Q Consensus       337 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LR---------S~eLKlere  407 (643)
                      .+..|--++.+|...+.-+.-+|+.+++|..++.-...+.......|--+|..||..+..+|         ....|.+++
T Consensus        11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e   90 (239)
T COG1579          11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERE   90 (239)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence            33444444444444444444444555555444444444444444444444444444443333         245566677


Q ss_pred             HhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006482          408 LENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA  453 (643)
Q Consensus       408 le~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka  453 (643)
                      +..|..|+...+++..+|+.+=.++...++.|+++...|+.++.+.
T Consensus        91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~  136 (239)
T COG1579          91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERL  136 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7778888888888888888887777778888887777777777655

>PRK04863 mukB cell division protein MukB; Provisional

Probab=95.74  E-value=1.2  Score=55.35  Aligned_cols=132  Identities=15%  Similarity=0.239  Sum_probs=65.4

Q ss_pred             hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhh-hh
Q 006482          323 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS-NE  401 (643)
Q Consensus       323 ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS-~e  401 (643)
                      +-..|..+..++...+.+++.+++.++.++..-...++.++.+++..+.....+..++..+...|..|+. +.++-- ..
T Consensus       356 ~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~-~~~~~~~~~  434 (1486)
T PRK04863        356 DLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALER-AKQLCGLPD  434 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCC
Confidence            3344445555555555555555555555555555555555555555555555555555554444444332 111100 11


Q ss_pred             hhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh-hCCCCC
Q 006482          402 LKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA-SGSGKS  459 (643)
Q Consensus       402 LKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka-~~~gk~  459 (643)
                      |    ..++|...+..|..++..++.+..+++.-++.++.+++-+..++... ...|++
T Consensus       435 ~----SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv  489 (1486)
T PRK04863        435 L----TADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEV  489 (1486)
T ss_pred             C----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            1    12345555566666666666666666666666666655555544432 455565

>PRK04863 mukB cell division protein MukB; Provisional

Probab=95.65  E-value=0.66  Score=57.64  Aligned_cols=69  Identities=16%  Similarity=0.178  Sum_probs=48.1

Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhh
Q 006482          363 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD  431 (643)
Q Consensus       363 ~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~  431 (643)
                      ..+++.|+.=|..++=--.-|....-.+++++.++....++++.++..+..+++.++++...+-++-|.
T Consensus       420 i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gk  488 (1486)
T PRK04863        420 VQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGE  488 (1486)
T ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            444455555555433333345566677788888888888888999999988888888888776655444

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.65  E-value=0.13  Score=49.78  Aligned_cols=116  Identities=22%  Similarity=0.282  Sum_probs=69.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 006482          287 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY  366 (643)
Q Consensus       287 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr  366 (643)
                      .-.+.|++-+.++-..|-.++--|-....-.+.|-.+......+-+.....+..|+.++..|..+|+.....++.+..|+
T Consensus        74 ~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~  153 (194)
T PF08614_consen   74 QKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDEL  153 (194)
T ss_dssp             ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555667777766666666677777777777888888888999999999999999999999999999999


Q ss_pred             HHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhh
Q 006482          367 ANVRLECNAADERAKILASEVIGLEEKALRLRSNEL  402 (643)
Q Consensus       367 daArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eL  402 (643)
                      .+.+++++.+.++.+.|-.|=-.|=+|.++.+..+-
T Consensus       154 ~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~eA  189 (194)
T PF08614_consen  154 QALQLQLNMLEEKLRKLEEENRELVERWMQRKAQEA  189 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999997765543

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=95.64  E-value=1.3  Score=53.49  Aligned_cols=168  Identities=23%  Similarity=0.332  Sum_probs=111.3

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006482          285 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE-----NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL  359 (643)
Q Consensus       285 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~E-----NsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l  359 (643)
                      +..+...|+.+|+|+ +||+.-.+.++--.+.-++|-++     .=...+.||.|...+.-.+..+..|++.+.-+...+
T Consensus       233 ~~e~i~~l~k~i~e~-~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~  311 (1074)
T KOG0250|consen  233 KEEEIKNLKKKIKEE-EEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKI  311 (1074)
T ss_pred             HHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788899999987 56777555555555444444433     334678899998888777777777777776665555


Q ss_pred             hhh--------------HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHH-------HHhhhhhhhHHHHhhhHHHH---
Q 006482          360 ESF--------------RNEYANVRLECNAADERAKILASEVIGLEEKAL-------RLRSNELKLERQLENSQSEI---  415 (643)
Q Consensus       360 e~l--------------~aErdaArle~~aA~ERak~LAaEVV~LEEk~l-------~LRS~eLKlerele~l~~E~---  415 (643)
                      +.+              +.|.++---+|..|.+..+.+..||..|++++.       ++++.-=.++|++..++.+.   
T Consensus       312 ~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~  391 (1074)
T KOG0250|consen  312 EEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNE  391 (1074)
T ss_pred             HHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            444              466666677888999999999999999887654       34444444566665554443   


Q ss_pred             -----HHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006482          416 -----SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA  453 (643)
Q Consensus       416 -----~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka  453 (643)
                           ...+.++..|+++.-.++..+..|.+|...++.+++..
T Consensus       392 ~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~  434 (1074)
T KOG0250|consen  392 LGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEE  434 (1074)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                 44444555555666666666666666666666665543

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=95.62  E-value=0.0031  Score=71.11  Aligned_cols=158  Identities=30%  Similarity=0.407  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh-----
Q 006482          291 ALEQHIEDLTQEKFALQRSLEASRALSES----LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES-----  361 (643)
Q Consensus       291 aLqqhIeDLT~EKfaLqR~L~~s~~l~es----La~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~-----  361 (643)
                      -|++.|.+|.+||-.|+-.+...+.-..+    ..+.+..+..+++.-...+.+|+++++++...+.-+...++.     
T Consensus       197 el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei  276 (713)
T PF05622_consen  197 ELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEI  276 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677888888888887666544433222    224455566677777777777777776665433333322222     


Q ss_pred             -------------------hHHHHHHHhhhhhhHHHHHHHHHHH-----------------HHhHHHHHHHHhhhhhhhH
Q 006482          362 -------------------FRNEYANVRLECNAADERAKILASE-----------------VIGLEEKALRLRSNELKLE  405 (643)
Q Consensus       362 -------------------l~aErdaArle~~aA~ERak~LAaE-----------------VV~LEEk~l~LRS~eLKle  405 (643)
                                         ++-|+|..|-.+    +|+..|.++                 |-.||++..-+.-..+.||
T Consensus       277 ~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a----~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LE  352 (713)
T PF05622_consen  277 DELRQENEELQAEAREARALRDELDELREKA----DRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLE  352 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                               233333333222    234444443                 3344444444433445566


Q ss_pred             HHHhh---hHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 006482          406 RQLEN---SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK  452 (643)
Q Consensus       406 rele~---l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRk  452 (643)
                      .++..   ++..+..|++++..++.++.+...-++.++.|.+.|+.++..
T Consensus       353 eel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~  402 (713)
T PF05622_consen  353 EELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEA  402 (713)
T ss_dssp             --------------------------------------------------
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66655   666778888888888888777777777777777666666543

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=95.60  E-value=3.8  Score=43.40  Aligned_cols=103  Identities=14%  Similarity=0.188  Sum_probs=47.1

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCc-ccccccccccccccc-cCccccCCCCCcccCCCCCCCCC
Q 006482          427 KERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTA-ASTVNASTSTEDLAI-TDTTLDNSNQDTHDDASLPRIDA  504 (643)
Q Consensus       427 keR~~l~s~i~aLQEEKklLqskLRka~~~gk~~~~~k~~-~~~kDASTSTdDLai-~d~~~~sSn~e~~~s~s~~~~~~  504 (643)
                      -||+.|.-.+..|.+|-+-|..-|-=.-.+-..+.+..|+ .+.+..-|+.-+-.+ |+.|..--..+.+...-..-+.+
T Consensus       157 dEke~llesvqRLkdEardlrqelavr~kq~E~pR~~~Pss~~~er~dtavqa~~slP~tP~~~gs~~~f~~pr~~d~~~  236 (333)
T KOG1853|consen  157 DEKEVLLESVQRLKDEARDLRQELAVRTKQTERPRIVEPSSVEAERTDTAVQAPESLPDTPSPGGSKEEFKMPRSEDVFM  236 (333)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCccchhhhhcchhhcCcccCCCCCCCCCchhhcCCCccccccc
Confidence            3566677788888888776665443332221222343343 233322233222222 44433111111111111234567


Q ss_pred             CCCCCCCccccccccCccccchhhHHHHHh
Q 006482          505 SGSTLLPESGRLALEGLAVNIPHDQMRMIH  534 (643)
Q Consensus       505 ~~~P~~P~~G~~~l~~~~vsIp~DQlRmI~  534 (643)
                      .++|+.|...     -++.+|.-|.||.+.
T Consensus       237 g~~pltp~aR-----isalnivgDllRkvg  261 (333)
T KOG1853|consen  237 GDVPLTPDAR-----ISALNIVGDLLRKVG  261 (333)
T ss_pred             CCCCCCchhh-----HHHHHHHHHHHHHhh
Confidence            7777666652     123456666666654

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=95.53  E-value=2.5  Score=51.97  Aligned_cols=51  Identities=18%  Similarity=0.194  Sum_probs=30.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHHHHHH
Q 006482          535 NINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLT  586 (643)
Q Consensus       535 nInaLisEla~Ere~l~~aL~~es~~~s~Lk~lN~ELsrKLE~qTQRLELlt  586 (643)
                      .+.+|+.+|+.+.++....|....+++=+ .-|-.++.++|-...++=|-.+
T Consensus      1083 ~~~~l~~~l~~~i~~~~~ll~e~er~l~E-~~L~~~v~~~l~~ri~~A~~~v 1133 (1353)
T TIGR02680      1083 TPAGLLARLEQEIAQRRELLTARERELLE-NHLQGEIARHLQSLILAAERQV 1133 (1353)
T ss_pred             CHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            45567777777777777777666555432 2344555555555555555444

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=95.35  E-value=3.6  Score=41.59  Aligned_cols=34  Identities=29%  Similarity=0.489  Sum_probs=24.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006482          287 EDFAALEQHIEDLTQEKFALQRSLEASRALSESL  320 (643)
Q Consensus       287 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esL  320 (643)
                      .+...|.+-|++++.||-.|+-.+...+.-++.+
T Consensus        54 ~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~   87 (312)
T PF00038_consen   54 EELRELRRQIDDLSKEKARLELEIDNLKEELEDL   87 (312)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHH
Confidence            4566777888888888888877777666655554

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>smart00787 Spc7 Spc7 kinetochore protein

Probab=95.26  E-value=3.6  Score=43.49  Aligned_cols=10  Identities=10%  Similarity=0.381  Sum_probs=6.5

Q ss_pred             ccccccCCch
Q 006482          277 QHGFYSTKHN  286 (643)
Q Consensus       277 ~~~F~s~~~~  286 (643)
                      |.+||+.+.+
T Consensus       101 F~EY~~a~~d  110 (312)
T smart00787      101 FKEYFSASPD  110 (312)
T ss_pred             HHHHHcCCHH
Confidence            7778776533

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=95.26  E-value=3.7  Score=41.10  Aligned_cols=45  Identities=16%  Similarity=0.208  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 006482          289 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ  333 (643)
Q Consensus       289 faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNq  333 (643)
                      ++.|++-||+.-..--.++..|..+..-++.+-.|..+|.++...
T Consensus         3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~   47 (237)
T PF00261_consen    3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQL   47 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777777777777777777777777777777777777666543

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.17  E-value=2.6  Score=50.98  Aligned_cols=157  Identities=20%  Similarity=0.300  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 006482          294 QHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC  373 (643)
Q Consensus       294 qhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~  373 (643)
                      .-|+++-++=-..+|++-..++-..+|.   ..+.+.++.++..+++|+.+++.+.+.++++...++.-.-||.+.+++|
T Consensus       748 e~v~e~~~~Ike~~~~~k~~~~~i~~lE---~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~  824 (1174)
T KOG0933|consen  748 EEVEESEQQIKEKERALKKCEDKISTLE---KKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEH  824 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334443333344444444444443332   3467778888888888888888777777777766666666666666666


Q ss_pred             hhH--------------HHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHH--------------HhhhH
Q 006482          374 NAA--------------DERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKK--------------KISSL  425 (643)
Q Consensus       374 ~aA--------------~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~--------------qlssl  425 (643)
                      .+-              ..--..|.+|+-.|+.++...-.+.-+++.++...+...+-+.+              +.+..
T Consensus       825 e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~  904 (1174)
T KOG0933|consen  825 EELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDG  904 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcc
Confidence            543              33334455555555555555444444444444443333333332              22333


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006482          426 EKERQDFQSTIEALQEEKKMMQSKLRKA  453 (643)
Q Consensus       426 ekeR~~l~s~i~aLQEEKklLqskLRka  453 (643)
                      +-+|+.|.-.+..++.|++.+-.++++.
T Consensus       905 ~l~~kkle~e~~~~~~e~~~~~k~v~~l  932 (1174)
T KOG0933|consen  905 ELERKKLEHEVTKLESEKANARKEVEKL  932 (1174)
T ss_pred             cchHHHHHhHHHHhhhhHHHHHHHHHHH
Confidence            3344444444445555554444444444

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=95.14  E-value=2.7  Score=41.41  Aligned_cols=26  Identities=23%  Similarity=0.409  Sum_probs=18.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006482          288 DFAALEQHIEDLTQEKFALQRSLEAS  313 (643)
Q Consensus       288 ~faaLqqhIeDLT~EKfaLqR~L~~s  313 (643)
                      .+..++..|.++-.++-.|++.++..
T Consensus        21 ~L~~~~~~l~~~~~~~~~l~~~i~~~   46 (302)
T PF10186_consen   21 RLLELRSELQQLKEENEELRRRIEEI   46 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777777777777777777665553

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=95.06  E-value=3.5  Score=41.26  Aligned_cols=27  Identities=33%  Similarity=0.373  Sum_probs=14.9

Q ss_pred             hhhhhHHHHHHHHHHHHHhHHHHHHHH
Q 006482          371 LECNAADERAKILASEVIGLEEKALRL  397 (643)
Q Consensus       371 le~~aA~ERak~LAaEVV~LEEk~l~L  397 (643)
                      .++..|.+|+..+...|..||+++..+
T Consensus       127 ~~Le~aEeR~e~~E~ki~eLE~el~~~  153 (237)
T PF00261_consen  127 QELERAEERAEAAESKIKELEEELKSV  153 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHHH
Confidence            344455566666666666666555444

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=95.01  E-value=0.72  Score=52.73  Aligned_cols=70  Identities=11%  Similarity=0.237  Sum_probs=42.0

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhh
Q 006482          326 SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSN  400 (643)
Q Consensus       326 aLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~  400 (643)
                      .+.+++-+....+.-|.+++.++++++.....+++.|+.+..-     .+....++.+-.++..|+.++..++..
T Consensus       257 ~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~-----~d~~~ea~~~l~~~~~l~~ql~~l~~~  326 (726)
T PRK09841        257 NIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDS-----VDLNLEAKAVLEQIVNVDNQLNELTFR  326 (726)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555667777777777888777777778887776532     122233444444555566666555443

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.99  E-value=1.3  Score=53.25  Aligned_cols=158  Identities=20%  Similarity=0.306  Sum_probs=108.0

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006482          282 STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES  361 (643)
Q Consensus       282 s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~  361 (643)
                      -+.+......|+..|+.+-+.=-+--+.+++.....+.|--|.++|.+-----...+.++...++-|..++..+.+.+..
T Consensus       782 ~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~  861 (1174)
T KOG0933|consen  782 KANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDK  861 (1174)
T ss_pred             hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34445556666666666666555666777778888888888888887766656667888888888899999999999999


Q ss_pred             hHHHHHHHhhhhhhHHHHHHHHHHHH---HhHHHHHHHHhhhh----hhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHH
Q 006482          362 FRNEYANVRLECNAADERAKILASEV---IGLEEKALRLRSNE----LKLERQLENSQSEISSYKKKISSLEKERQDFQS  434 (643)
Q Consensus       362 l~aErdaArle~~aA~ERak~LAaEV---V~LEEk~l~LRS~e----LKlerele~l~~E~~s~~~qlsslekeR~~l~s  434 (643)
                      +..++..++.+.+.-..+-+..--|+   +...++|++..++-    -|++.++..+..+...++++++.+.+       
T Consensus       862 ~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~-------  934 (1174)
T KOG0933|consen  862 VEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLK-------  934 (1174)
T ss_pred             HHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHH-------
Confidence            99999999988888877777776666   66677777655431    23344444455555555555555433       


Q ss_pred             HHHHHHHHHHHH
Q 006482          435 TIEALQEEKKMM  446 (643)
Q Consensus       435 ~i~aLQEEKklL  446 (643)
                      -.+-+-+||.++
T Consensus       935 k~~wi~~ek~~f  946 (1174)
T KOG0933|consen  935 KHEWIGDEKRLF  946 (1174)
T ss_pred             hccchhHHHHhh
Confidence            334444555544

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=94.95  E-value=6.4  Score=42.22  Aligned_cols=41  Identities=37%  Similarity=0.528  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006482          290 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDS  330 (643)
Q Consensus       290 aaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~  330 (643)
                      -.|.--|..|.+|---|...|+.-+.-+..|..||.+|-..
T Consensus        23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~   63 (310)
T PF09755_consen   23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREA   63 (310)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45777788888888888888888888889999999888654

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=94.91  E-value=1.7  Score=51.11  Aligned_cols=120  Identities=22%  Similarity=0.256  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 006482          292 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL  371 (643)
Q Consensus       292 LqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArl  371 (643)
                      +.+-+..++-|-.+|-++|+.--.+...|-.+....-..++.....+..+..+.--|+-|+.+..-+|+--..||+--+.
T Consensus        97 ~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~  176 (769)
T PF05911_consen   97 LSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRR  176 (769)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            33444455555556666666555666666666666666777777777777777788888888888888888899998888


Q ss_pred             hhhhHHHHHHHHHHHHHhHHHHHHHHhhhh----------hhhHHHHhhh
Q 006482          372 ECNAADERAKILASEVIGLEEKALRLRSNE----------LKLERQLENS  411 (643)
Q Consensus       372 e~~aA~ERak~LAaEVV~LEEk~l~LRS~e----------LKlerele~l  411 (643)
                      .+.+|.-.=.-=..-|.-||+.|.|||.-.          -|++.|++.+
T Consensus       177 ~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~  226 (769)
T PF05911_consen  177 AAEAASKQHLESVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESL  226 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHh
Confidence            888887554444455668999999999765          3455666655

The function of this family is unknown.

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=94.91  E-value=0.68  Score=51.01  Aligned_cols=104  Identities=16%  Similarity=0.306  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHH
Q 006482          337 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS  416 (643)
Q Consensus       337 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~  416 (643)
                      +++.+..+++.++.|+..-.-+...+..||.+++.|.+.+.+-=+       ..+++...+|-+-+|.+.++..+.....
T Consensus        75 qlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~-------~v~~~~~~a~~n~~kAqQ~lar~t~Q~q  147 (499)
T COG4372          75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQERE-------AVRQELAAARQNLAKAQQELARLTKQAQ  147 (499)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677777888888887777888888888888888887765322       2355566677777777777766666666


Q ss_pred             HHHHHhhhHHHhhhhhHHHHHHHHHHHHHHH
Q 006482          417 SYKKKISSLEKERQDFQSTIEALQEEKKMMQ  447 (643)
Q Consensus       417 s~~~qlsslekeR~~l~s~i~aLQEEKklLq  447 (643)
                      .++..|--|..+|..|.--.+.||-+.|.||
T Consensus       148 ~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ  178 (499)
T COG4372         148 DLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ  178 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666777777777777777777766

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.87  E-value=5.1  Score=46.76  Aligned_cols=57  Identities=21%  Similarity=0.359  Sum_probs=38.6

Q ss_pred             HHHHHHHHHhhhHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 006482          314 RALSESLAAENSSLTDSY-NQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR  370 (643)
Q Consensus       314 ~~l~esLa~ENsaLt~~y-NqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaAr  370 (643)
                      ++.-+-|..--.-|.+.| -.+..+-.++++.+..|+.+++.|+..+..+..|++..+
T Consensus       535 ~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~  592 (717)
T PF10168_consen  535 QECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLR  592 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555555555665 445566677888888888888888888888888777654

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=94.85  E-value=7.1  Score=42.23  Aligned_cols=26  Identities=8%  Similarity=0.040  Sum_probs=12.6

Q ss_pred             HHHhHHHHHHHHhhhhhhhHHHHhhh
Q 006482          386 EVIGLEEKALRLRSNELKLERQLENS  411 (643)
Q Consensus       386 EVV~LEEk~l~LRS~eLKlerele~l  411 (643)
                      ++..|+.++.+++.+--.++.++.++
T Consensus       237 ~~~~~~~~i~~l~~~i~~~~~~~~~~  262 (457)
T TIGR01000       237 ILATIQQQIDQLQKSIASYQVQKAGL  262 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            34445555555555444444444443

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=94.83  E-value=13  Score=45.29  Aligned_cols=56  Identities=18%  Similarity=0.199  Sum_probs=35.8

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHHHHHH
Q 006482          531 RMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLT  586 (643)
Q Consensus       531 RmI~nInaLisEla~Ere~l~~aL~~es~~~s~Lk~lN~ELsrKLE~qTQRLELlt  586 (643)
                      .=|..|.+-|..+..+++++=..|..-..+...++..-..+...++...+.|+-+.
T Consensus       607 ~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  662 (1201)
T PF12128_consen  607 ERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLK  662 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            34667778888887777777777766666666666665555555555544444433

>PF13166 AAA_13: AAA domain

Probab=94.76  E-value=3.3  Score=46.35  Aligned_cols=117  Identities=21%  Similarity=0.336  Sum_probs=55.3

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHH-------------HhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHH
Q 006482          330 SYNQQRSVVNQLKSEMEKLQEEIKVQLV-------------ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALR  396 (643)
Q Consensus       330 ~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~-------------~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~  396 (643)
                      .+.+-...+.+++..++.+...+..-..             .+..+....+.....+.+..+....+..+.-.|.+++..
T Consensus       323 ~~~~~~~~~~~l~~~l~~l~~~L~~K~~~~~~~~~~~~~~~~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~  402 (712)
T PF13166_consen  323 DKEELKSAIEALKEELEELKKALEKKIKNPSSPIELEEINEDIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWL  402 (712)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555555555555555444321             122334444455555555666666677777766666654


Q ss_pred             HhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHH
Q 006482          397 LRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS  448 (643)
Q Consensus       397 LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqs  448 (643)
                      ..-..+  ...++.+..++..+++++..++++...+...+..++.+.+.|+.
T Consensus       403 ~~~~~~--~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~  452 (712)
T PF13166_consen  403 HLIAKL--KEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEA  452 (712)
T ss_pred             HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            322222  22333333344444444444444444444444444444433333

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.54  E-value=0.49  Score=49.55  Aligned_cols=117  Identities=18%  Similarity=0.252  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHH
Q 006482          336 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI  415 (643)
Q Consensus       336 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~  415 (643)
                      ..+.+|+.++++.+.|.+.+..-+..+..+-+- ..+..+..+.-+.|-.|...|++++..+..++-.+.+|++.+..+.
T Consensus         9 ~l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~-~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~   87 (314)
T PF04111_consen    9 LLLEQLDKQLEQAEKERDTYQEFLKKLEEESDS-EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEEL   87 (314)
T ss_dssp             ----------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357889999999999999999888888632111 1122333344444444444444444444444444444444444444


Q ss_pred             HHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006482          416 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA  453 (643)
Q Consensus       416 ~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka  453 (643)
                      ..++..-...-+++..++..+-.+++|...+..+++.+
T Consensus        88 ~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~  125 (314)
T PF04111_consen   88 EELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYA  125 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444455555555555556665555544433

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=94.45  E-value=8.8  Score=41.54  Aligned_cols=23  Identities=17%  Similarity=0.313  Sum_probs=11.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhh
Q 006482          431 DFQSTIEALQEEKKMMQSKLRKA  453 (643)
Q Consensus       431 ~l~s~i~aLQEEKklLqskLRka  453 (643)
                      .+...++.++.+...++.+|.++
T Consensus       288 ~~~~~l~~~~~~l~~~~~~l~~a  310 (457)
T TIGR01000       288 KVKQEITDLNQKLLELESKIKSL  310 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555555555555443

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function

Probab=94.43  E-value=2  Score=42.77  Aligned_cols=95  Identities=26%  Similarity=0.315  Sum_probs=68.8

Q ss_pred             HHhhhHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHh
Q 006482          321 AAENSSLTDSYNQQ--RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR  398 (643)
Q Consensus       321 a~ENsaLt~~yNqQ--~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LR  398 (643)
                      --+|=+|+.+|-..  ..-..+|...+++|+.+++.+.-.++.+-.+|-..|+++          +.++-.||.+-..+-
T Consensus       119 R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~----------~~~L~~Le~~W~~~v  188 (221)
T PF05700_consen  119 RLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEA----------GEELRYLEQRWKELV  188 (221)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHH
Confidence            34566677777433  345578889999999999999999999999999887764          345566777777777


Q ss_pred             hhhhhhHHHHhhhHHHHHHHHHHhhhH
Q 006482          399 SNELKLERQLENSQSEISSYKKKISSL  425 (643)
Q Consensus       399 S~eLKlerele~l~~E~~s~~~qlssl  425 (643)
                      +.-+.++....+|..||.+.+++...+
T Consensus       189 ~kn~eie~a~~~Le~ei~~l~~~~~~~  215 (221)
T PF05700_consen  189 SKNLEIEVACEELEQEIEQLKRKAAEL  215 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777766777666776766666665543

The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=94.41  E-value=3.9  Score=49.26  Aligned_cols=101  Identities=27%  Similarity=0.405  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHh--------------hhhh
Q 006482          337 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR--------------SNEL  402 (643)
Q Consensus       337 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LR--------------S~eL  402 (643)
                      .+.-|+-++|.+++-+..-...||-+++|..+-=-..+.+.      +-|.-.||.+-.+||              -+..
T Consensus       326 RaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~s------s~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~q  399 (1243)
T KOG0971|consen  326 RAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAAS------SYQFKQLEQQNARLKDALVRLRDLSASEKQDHQ  399 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc------hHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            34456666666666666666777777777766422221111      223344444444443              3456


Q ss_pred             hhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHH
Q 006482          403 KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK  443 (643)
Q Consensus       403 Klerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEK  443 (643)
                      |+.|++|-.+.|+.-++++-+-|..+=..+.++|.-|||.-
T Consensus       400 K~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQV  440 (1243)
T KOG0971|consen  400 KLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQV  440 (1243)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77788888888888888887777777777778877777653

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=94.35  E-value=3.6  Score=48.09  Aligned_cols=106  Identities=19%  Similarity=0.297  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHH
Q 006482          341 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKK  420 (643)
Q Consensus       341 Lk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~  420 (643)
                      .+.++|..++.-+.|+.   .+..++..   +.......+..|-..+-.||.+...+.+.--..+++.+.|+..++....
T Consensus       138 ~q~ELee~q~~Hqeql~---~Lt~aHq~---~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~  211 (739)
T PF07111_consen  138 SQRELEEAQRLHQEQLS---SLTQAHQE---ALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQE  211 (739)
T ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            35556666665555544   33333333   3345566777777777777776666655555556666666666555544


Q ss_pred             Hhhh------------------------HHHhhhhhHHHHHHHHHHH-------HHHHHHHHh
Q 006482          421 KISS------------------------LEKERQDFQSTIEALQEEK-------KMMQSKLRK  452 (643)
Q Consensus       421 qlss------------------------lekeR~~l~s~i~aLQEEK-------klLqskLRk  452 (643)
                      .+++                        -+-||+.|..+|..|||||       -+||+||.-
T Consensus       212 ~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqS  274 (739)
T PF07111_consen  212 ELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRDALQATAELLQVRVQS  274 (739)
T ss_pred             HHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4433                        2578999999999999999       456666654

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=94.30  E-value=2.1  Score=45.88  Aligned_cols=142  Identities=17%  Similarity=0.246  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHH
Q 006482          302 EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK  381 (643)
Q Consensus       302 EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak  381 (643)
                      ++-.|..-|..+++-+..|..|...|..++++-.+-+.-|+..+.+++-...  ......+..||.+.......|.++..
T Consensus        66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~--~~~~~~~~~ere~lV~qLEk~~~q~~  143 (319)
T PF09789_consen   66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDE--GIGARHFPHEREDLVEQLEKLREQIE  143 (319)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhc--cccccccchHHHHHHHHHHHHHHHHH
Confidence            5556667777777777778888888777776655555555555544443321  12222334677777777777777777


Q ss_pred             HHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 006482          382 ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK  452 (643)
Q Consensus       382 ~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRk  452 (643)
                      .|.-++..+-+...     ||+.||.  .-++.+.++...++-+=.....=.--||+|=.|-|-|+.||..
T Consensus       144 qLe~d~qs~lDEke-----El~~ERD--~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q  207 (319)
T PF09789_consen  144 QLERDLQSLLDEKE-----ELVTERD--AYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQ  207 (319)
T ss_pred             HHHHHHHHHHHHHH-----HHHHHHH--HHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHH
Confidence            77777666555433     3333333  3444444444444433222111111245554444444444443

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=94.29  E-value=2.8  Score=49.37  Aligned_cols=151  Identities=22%  Similarity=0.271  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 006482          292 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSL----TDSYNQ----QRSVVNQLKSEMEKLQEEIKVQLVELESFR  363 (643)
Q Consensus       292 LqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaL----t~~yNq----Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~  363 (643)
                      |+.-+++|-.|.-.|.+.|+..+.-......+...+    ..+-.+    -+..+.-+++++..++.+.+.....+..+.
T Consensus         1 Lq~ql~~~q~E~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~Lq   80 (775)
T PF10174_consen    1 LQAQLERLQRENERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQ   80 (775)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHH
Confidence            445677888888888888888776666665554331    011111    122344445555555555555555555555


Q ss_pred             HHHHHHhhhh-------hhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHH
Q 006482          364 NEYANVRLEC-------NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTI  436 (643)
Q Consensus       364 aErdaArle~-------~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i  436 (643)
                      .|. .++-+.       ..+......+.. +=-.++.+.++-.       +.+.+..|+..+++.+..++-.=..++-++
T Consensus        81 eEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~-------E~er~~~El~~lr~~lE~~q~~~e~~q~~l  151 (775)
T PF10174_consen   81 EEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQA-------ERERLQRELERLRKTLEELQLRIETQQQTL  151 (775)
T ss_pred             HHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            544 333222       233333334444 3334455555444       444455555555555555544444566777


Q ss_pred             HHHHHHHHHHHHHHH
Q 006482          437 EALQEEKKMMQSKLR  451 (643)
Q Consensus       437 ~aLQEEKklLqskLR  451 (643)
                      ++.+++.+.|+.+|-
T Consensus       152 ~~~~eei~kL~e~L~  166 (775)
T PF10174_consen  152 DKADEEIEKLQEMLQ  166 (775)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            777788888888774

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=94.23  E-value=2.1  Score=40.64  Aligned_cols=76  Identities=21%  Similarity=0.266  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHH
Q 006482          308 RSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEV  387 (643)
Q Consensus       308 R~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEV  387 (643)
                      ..+...+..-..|..|-+.+-++.+.....+..++++...++.+              ......+....++.-+.+..|+
T Consensus        81 ~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~--------------~~~~~~~l~~l~~~~~~~~~e~  146 (191)
T PF04156_consen   81 GELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELREL--------------LKSVEERLDSLDESIKELEKEI  146 (191)
T ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444445555555555555555555555555444433              3333333334444444455555


Q ss_pred             HhHHHHHHHH
Q 006482          388 IGLEEKALRL  397 (643)
Q Consensus       388 V~LEEk~l~L  397 (643)
                      ..|...+.+.
T Consensus       147 ~~l~~~~~~~  156 (191)
T PF04156_consen  147 RELQKELQDS  156 (191)
T ss_pred             HHHHHHHHHH
Confidence            5555444443

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=94.23  E-value=4.7  Score=39.75  Aligned_cols=12  Identities=17%  Similarity=0.183  Sum_probs=6.6

Q ss_pred             ccccCccccchh
Q 006482          516 LALEGLAVNIPH  527 (643)
Q Consensus       516 ~~l~~~~vsIp~  527 (643)
                      +.+.|+...|+.
T Consensus       223 i~~~gs~s~i~d  234 (302)
T PF10186_consen  223 ITPSGSRSTIID  234 (302)
T ss_pred             cccCccccchhh
Confidence            345666666555

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=94.19  E-value=0.4  Score=40.81  Aligned_cols=63  Identities=17%  Similarity=0.213  Sum_probs=55.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHH
Q 006482          334 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALR  396 (643)
Q Consensus       334 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~  396 (643)
                      ....+..|+..+.++.+.+.++..++..+..|||.|......|-+....|-+||-.|..+.-.
T Consensus         3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~   65 (69)
T PF14197_consen    3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE   65 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346788999999999999999999999999999999999999999888888888777766433

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=94.16  E-value=5.7  Score=38.72  Aligned_cols=32  Identities=25%  Similarity=0.274  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006482          290 AALEQHIEDLTQEKFALQRSLEASRALSESLA  321 (643)
Q Consensus       290 aaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa  321 (643)
                      ..|+|+|.||-..--.+.+++.+.......|.
T Consensus        26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le   57 (221)
T PF04012_consen   26 KMLEQAIRDMEEQLRKARQALARVMANQKRLE   57 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999998877777777776666555443

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=94.14  E-value=19  Score=44.08  Aligned_cols=62  Identities=24%  Similarity=0.408  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHH-HHHHHHHHhHHHHHHHHh
Q 006482          337 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA-KILASEVIGLEEKALRLR  398 (643)
Q Consensus       337 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERa-k~LAaEVV~LEEk~l~LR  398 (643)
                      .+++++.++.+.+.+++.....+..++.++.+.+.++..+.+.. ..+..++-.|+.++.++.
T Consensus       636 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~  698 (1201)
T PF12128_consen  636 KIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLK  698 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555655556666777777777777776665444 345555666666665554

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=94.10  E-value=10  Score=40.94  Aligned_cols=37  Identities=19%  Similarity=0.284  Sum_probs=22.5

Q ss_pred             hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHH
Q 006482          359 LESFRNEYANVRLECNAADERAKILASEVIGLEEKAL  395 (643)
Q Consensus       359 le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l  395 (643)
                      +..+..++...+..+++-.-..+.+-.++-.|+.++.
T Consensus       256 l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~  292 (498)
T TIGR03007       256 IEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKE  292 (498)
T ss_pred             HHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Confidence            3444556666666666666666666666666666653

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=93.95  E-value=4  Score=43.62  Aligned_cols=31  Identities=16%  Similarity=0.283  Sum_probs=17.3

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006482          284 KHNEDFAALEQHIEDLTQEKFALQRSLEASR  314 (643)
Q Consensus       284 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~  314 (643)
                      .+...+.+||+-|.+|-+|-..|--...+-.
T Consensus       157 ~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~  187 (306)
T PF04849_consen  157 QKCIQLEALQEKLKSLEEENEQLRSEASQLK  187 (306)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3444566677766666666655544433333

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF13514 AAA_27: AAA domain

Probab=93.90  E-value=9.7  Score=45.81  Aligned_cols=48  Identities=19%  Similarity=0.451  Sum_probs=40.9

Q ss_pred             HHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCc
Q 006482          413 SEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSI  460 (643)
Q Consensus       413 ~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka~~~gk~~  460 (643)
                      ..|..+++....+++.+..++.-++.+.++-..+..+|+.+...|.++
T Consensus       452 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~  499 (1111)
T PF13514_consen  452 ETVEAFRAEFEELERQLRRARDRLEELEEELARLEARLRRLAAAGDVP  499 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            567788888888888888888888888899999999999998888774

>KOG1103 consensus Predicted coiled-coil protein [Function unknown]

Probab=93.90  E-value=10  Score=42.00  Aligned_cols=66  Identities=20%  Similarity=0.265  Sum_probs=48.8

Q ss_pred             HHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 006482          304 FALQRSLE-ASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV  369 (643)
Q Consensus       304 faLqR~L~-~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaA  369 (643)
                      .+|+-+++ +.+++.-.|.++-++-.+..-+-.+++.-|..+.|||+++|.-.......+..+.|..
T Consensus       106 ~s~LaAaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl  172 (561)
T KOG1103|consen  106 ASLLAAAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKL  172 (561)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444443 5788999999999888877766677888999999999999987776665554444443

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=93.87  E-value=9.1  Score=47.37  Aligned_cols=62  Identities=15%  Similarity=0.213  Sum_probs=45.6

Q ss_pred             HhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHH
Q 006482          322 AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL  383 (643)
Q Consensus       322 ~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~L  383 (643)
                      .|-.+.-...+.-+.++.+|...||.|+.++..+-.+-+.+..+.+.|+.++..|..-.+.|
T Consensus      1605 ~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~l 1666 (1758)
T KOG0994|consen 1605 EETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEIL 1666 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445566677788999999999999888777777777777888888777776665533

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=93.82  E-value=8.6  Score=46.69  Aligned_cols=176  Identities=24%  Similarity=0.341  Sum_probs=97.1

Q ss_pred             ccccccccCCchhhHHHH-------------------HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 006482          275 ENQHGFYSTKHNEDFAAL-------------------EQHIE--DLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ  333 (643)
Q Consensus       275 e~~~~F~s~~~~~~faaL-------------------qqhIe--DLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNq  333 (643)
                      .+.--|...++-.+||.|                   ++|++  ||-++--+|++.+....+--+.|-+++++|....+.
T Consensus       141 ~NLCqFLpQDkV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~  220 (1072)
T KOG0979|consen  141 DNLCQFLPQDKVKEFARLSPIELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVER  220 (1072)
T ss_pred             CchhhhccHHHHHHHHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            345569999999999965                   45554  555666677777777777777777777776665554


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHH------
Q 006482          334 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQ------  407 (643)
Q Consensus       334 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlere------  407 (643)
                      -... ...++.+|.|+.-  --.+..+....||.+.++...-|.+--|.|-.|+..+|.+.-.|++.-=++..+      
T Consensus       221 ~rer-~~~~~~Ie~l~~k--~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~  297 (1072)
T KOG0979|consen  221 VRER-ERKKSKIELLEKK--KKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQR  297 (1072)
T ss_pred             HHHH-HHHHHHHHHHHHh--ccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHH
Confidence            3322 2233344443221  112333444566666666555566666666666666655555555511111111      


Q ss_pred             ---------------HhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006482          408 ---------------LENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA  453 (643)
Q Consensus       408 ---------------le~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka  453 (643)
                                     +....+++.....+++++.+.+-+.|..|....+.--.+|..|.+.
T Consensus       298 ~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~  358 (1072)
T KOG0979|consen  298 ELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQET  358 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence                           1224445555556666666666665555555544444444444443

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=93.79  E-value=9.3  Score=45.22  Aligned_cols=172  Identities=20%  Similarity=0.259  Sum_probs=103.2

Q ss_pred             cccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-------HhhHHHHHHHHHHHHHHHHH
Q 006482          280 FYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYN-------QQRSVVNQLKSEMEKLQEEI  352 (643)
Q Consensus       280 F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yN-------qQ~~~v~qLk~~mE~Lq~Ei  352 (643)
                      |....++..-.+||..|+.=-..=-+|.|.|.....=.+.|-......+..-+       .-.......|.+|+++.-++
T Consensus       217 ~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL  296 (775)
T PF10174_consen  217 LQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLEL  296 (775)
T ss_pred             hhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            33445555566888888887777777888877755444444332222222111       12233344555566666665


Q ss_pred             HHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhh
Q 006482          353 KVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDF  432 (643)
Q Consensus       353 ~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l  432 (643)
                      .---.++.++.++...+--...+..++--.|=-++-..|.++-.|.++.=.|+-+|+.....+....+++..++.|+..+
T Consensus       297 ~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~  376 (775)
T PF10174_consen  297 SRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRL  376 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555554444455556666666666677777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 006482          433 QSTIEALQEEKKMMQSKLR  451 (643)
Q Consensus       433 ~s~i~aLQEEKklLqskLR  451 (643)
                      ...|+-|.+.-.....+|+
T Consensus       377 ~~Ei~~l~d~~d~~e~ki~  395 (775)
T PF10174_consen  377 QGEIEDLRDMLDKKERKIN  395 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            7766666654433333333

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=93.75  E-value=1.9  Score=46.17  Aligned_cols=87  Identities=17%  Similarity=0.275  Sum_probs=63.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh-------------------HHHHHHHHHHHHH
Q 006482          288 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQR-------------------SVVNQLKSEMEKL  348 (643)
Q Consensus       288 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~-------------------~~v~qLk~~mE~L  348 (643)
                      ++..|.+.+.|..++.-.|...+..-+.--..+-.++-.|-.+.+.+.                   ..+..++.+.++|
T Consensus        66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qL  145 (319)
T PF09789_consen   66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQL  145 (319)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHH
Confidence            566666666666666666666666666555556666666665555543                   3457788999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHhhhhh
Q 006482          349 QEEIKVQLVELESFRNEYANVRLECN  374 (643)
Q Consensus       349 q~Ei~aQ~~~le~l~aErdaArle~~  374 (643)
                      +.++++..-+.+-+..|||+++--|.
T Consensus       146 e~d~qs~lDEkeEl~~ERD~yk~K~~  171 (319)
T PF09789_consen  146 ERDLQSLLDEKEELVTERDAYKCKAH  171 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999876543

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=93.73  E-value=5.4  Score=49.20  Aligned_cols=127  Identities=20%  Similarity=0.265  Sum_probs=71.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 006482          287 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY  366 (643)
Q Consensus       287 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr  366 (643)
                      +=|.-.--.|.+|+   ....|-+.++++|-                |++++++..++...+++.|+.-+..|.      
T Consensus      1164 ~CF~~WD~il~~L~---~rt~rl~~~A~~l~----------------~tGv~gay~s~f~~me~kl~~ir~il~------ 1218 (1758)
T KOG0994|consen 1164 ECFQTWDAILQELA---LRTHRLINRAKELK----------------QTGVLGAYASRFLDMEEKLEEIRAILS------ 1218 (1758)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHhh----------------hccCchhhHhHHHHHHHHHHHHHHHhc------
Confidence            34554445555554   34566677777663                556666666666555554332222221      


Q ss_pred             HHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHH
Q 006482          367 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK  443 (643)
Q Consensus       367 daArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEK  443 (643)
                           ..+-+-|-...|+.+.-.|+.++..++-.--..|..|..+..++....+.|++|++++..|..+...|.|.-
T Consensus      1219 -----~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~ 1290 (1758)
T KOG0994|consen 1219 -----APSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQL 1290 (1758)
T ss_pred             -----CCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                 111122223334444455555544443333334666666777777778888899888888888887777654

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=93.67  E-value=6.8  Score=47.34  Aligned_cols=125  Identities=18%  Similarity=0.292  Sum_probs=81.3

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh-----------HHHHHHHHHHHHHhHHHH-----
Q 006482          330 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNA-----------ADERAKILASEVIGLEEK-----  393 (643)
Q Consensus       330 ~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~a-----------A~ERak~LAaEVV~LEEk-----  393 (643)
                      -.-.-...+++|++.-|+|.+++..-.+.++.|++-.|||- .+.+           -.||.|.|--||-.||+-     
T Consensus       404 elE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAl-GAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~E  482 (1243)
T KOG0971|consen  404 ELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAAL-GAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNE  482 (1243)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334567778888888888888888888888888888862 2221           124555555555555431     


Q ss_pred             --HHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhC
Q 006482          394 --ALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG  455 (643)
Q Consensus       394 --~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka~~  455 (643)
                        +---|--|+-|++|++-++--+.-+.+++.++.+---|..-||-..+|=-..||..|+....
T Consensus       483 QL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~d  546 (1243)
T KOG0971|consen  483 QLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTD  546 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              00113345666667766666666667777776666566666777777888899999988755

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.66  E-value=9.7  Score=46.95  Aligned_cols=151  Identities=22%  Similarity=0.296  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHH-----------HHHHHHHHHHHHHHHHHHH
Q 006482          290 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVN-----------QLKSEMEKLQEEIKVQLVE  358 (643)
Q Consensus       290 aaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~-----------qLk~~mE~Lq~Ei~aQ~~~  358 (643)
                      .-|+.-||..-.+|+.+.-+++.++..-+.+-.|++.|...-+.-...+.           .++.+++.++.++.--...
T Consensus       415 kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~  494 (1293)
T KOG0996|consen  415 KKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQ  494 (1293)
T ss_pred             HHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            34556677777778888888888887777777777766665554433332           2334444445544444444


Q ss_pred             hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhh-------hhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhh
Q 006482          359 LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS-------NELKLERQLENSQSEISSYKKKISSLEKERQD  431 (643)
Q Consensus       359 le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS-------~eLKlerele~l~~E~~s~~~qlsslekeR~~  431 (643)
                      +-..++|.+-|+.+...-..|.-.+-.-|..|..+++..+-       ...+++.++..++.|+....+.+..+-++-+.
T Consensus       495 ~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~  574 (1293)
T KOG0996|consen  495 VNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERN  574 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHH
Confidence            55556666666666665555655566666666666665321       12233445555555666666666666666666


Q ss_pred             hHHHHHHHH
Q 006482          432 FQSTIEALQ  440 (643)
Q Consensus       432 l~s~i~aLQ  440 (643)
                      +.+.++++.
T Consensus       575 ~~~~~~~~r  583 (1293)
T KOG0996|consen  575 LKSQLNKLR  583 (1293)
T ss_pred             HHHHHHHHH
Confidence            666555555

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=93.55  E-value=5.5  Score=44.22  Aligned_cols=92  Identities=18%  Similarity=0.362  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHH
Q 006482          337 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS  416 (643)
Q Consensus       337 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~  416 (643)
                      .+++.+.++++++.+|..+.-                     +...|..++-.||..+-+++-.-...+.++..+...|+
T Consensus        39 ~l~q~q~ei~~~~~~i~~~~~---------------------~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~   97 (420)
T COG4942          39 QLKQIQKEIAALEKKIREQQD---------------------QRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIA   97 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence            455666666666665544443                     33445555556666666665555555666666666666


Q ss_pred             HHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 006482          417 SYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKS  459 (643)
Q Consensus       417 s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka~~~gk~  459 (643)
                      ..++.+..++..+          ++++..|-.-|+.+-..|+-
T Consensus        98 ~~~~~l~~l~~q~----------r~qr~~La~~L~A~~r~g~~  130 (420)
T COG4942          98 DLNARLNALEVQE----------REQRRRLAEQLAALQRSGRN  130 (420)
T ss_pred             HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhccCC
Confidence            6666666655444          45556666666666555554

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=93.36  E-value=4.6  Score=43.52  Aligned_cols=34  Identities=18%  Similarity=0.124  Sum_probs=21.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006482          288 DFAALEQHIEDLTQEKFALQRSLEASRALSESLA  321 (643)
Q Consensus       288 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa  321 (643)
                      ....+.+.|.++.++...++..+...++..+.|-
T Consensus       198 ~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~  231 (498)
T TIGR03007       198 QEGDYYSEISEAQEELEAARLELNEAIAQRDALK  231 (498)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445667777777777777766666665555443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=93.26  E-value=11  Score=48.18  Aligned_cols=162  Identities=25%  Similarity=0.358  Sum_probs=108.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHhhhH-------HHHHHHH
Q 006482          288 DFAALEQHIEDLTQEKFALQRSLEASRALS---------------------------ESLAAENSS-------LTDSYNQ  333 (643)
Q Consensus       288 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~---------------------------esLa~ENsa-------Lt~~yNq  333 (643)
                      |-++|.|-++-+.++-..|+|.|-+.++-.                           -.|-.||.+       |.+.+|.
T Consensus      1175 e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl~~~i~k 1254 (1822)
T KOG4674|consen 1175 ENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKIQELRDKIEK 1254 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777777777777777787777666544                           123344444       4444555


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHH--------HHHHHHHHHhHHHHHHHHhhhhhhhH
Q 006482          334 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADER--------AKILASEVIGLEEKALRLRSNELKLE  405 (643)
Q Consensus       334 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ER--------ak~LAaEVV~LEEk~l~LRS~eLKle  405 (643)
                      ..-.+.-|+..+.+|..+|..-.+++.-++.|-+.-+++.++--+-        -+.|.+||-.|++++-.       .+
T Consensus      1255 l~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~-------ke 1327 (1822)
T KOG4674|consen 1255 LNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEE-------KE 1327 (1822)
T ss_pred             HHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH-------HH
Confidence            5555555566666666677777788888888888888888877665        56788888888877662       25


Q ss_pred             HHHhhhHHHHHHHH----HHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhCC
Q 006482          406 RQLENSQSEISSYK----KKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGS  456 (643)
Q Consensus       406 rele~l~~E~~s~~----~qlsslekeR~~l~s~i~aLQEEKklLqskLRka~~~  456 (643)
                      +.++.+..++.+++    .++-++..+++.+...|+.+-.=+..|-.+++...+.
T Consensus      1328 ~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q 1382 (1822)
T KOG4674|consen 1328 NLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQ 1382 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55556666665555    7777777778777777777766666666666555443

>PRK11281 hypothetical protein; Provisional

Probab=93.18  E-value=2.8  Score=51.05  Aligned_cols=15  Identities=20%  Similarity=0.113  Sum_probs=7.6

Q ss_pred             HHHHHHHHhHHHHHH
Q 006482          381 KILASEVIGLEEKAL  395 (643)
Q Consensus       381 k~LAaEVV~LEEk~l  395 (643)
                      ..|-+|...|+.+..
T Consensus       195 ~~l~ae~~~l~~~~~  209 (1113)
T PRK11281        195 VLLQAEQALLNAQND  209 (1113)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344555555555543

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=93.08  E-value=13  Score=41.95  Aligned_cols=118  Identities=18%  Similarity=0.319  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHH
Q 006482          306 LQRSLEASRALSESLAAENSSLTDSYNQ---QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI  382 (643)
Q Consensus       306 LqR~L~~s~~l~esLa~ENsaLt~~yNq---Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~  382 (643)
                      +..-|...++.+..|..|-+.|..+|-=   -...+..+..+++.++..+..-...++.-..=|-..+-...+..++-..
T Consensus       311 l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~  390 (560)
T PF06160_consen  311 LYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEE  390 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHH
Confidence            3445555556666666666666666521   2233444455555555444444444444444455555566667777777


Q ss_pred             HHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhh
Q 006482          383 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS  423 (643)
Q Consensus       383 LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qls  423 (643)
                      +..+...+-+.+..||.+|.+++..|..++.++..++|+++
T Consensus       391 ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le  431 (560)
T PF06160_consen  391 IEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE  431 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888999888888888888888888887

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=93.07  E-value=13  Score=42.76  Aligned_cols=92  Identities=27%  Similarity=0.283  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHH--HHhhh
Q 006482          296 IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR-NEYA--NVRLE  372 (643)
Q Consensus       296 IeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~-aErd--aArle  372 (643)
                      .++-.+|--+|+..|+.-..-.+.+.++-..++..+-+....+.+.+...++++++++...-..+-+. +|..  ..+.-
T Consensus       323 ~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~  402 (594)
T PF05667_consen  323 QEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQAL  402 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            34445566667777777777777777888888877777777777777777777777766655444442 1222  22333


Q ss_pred             hhhHHHHHHHHHHHH
Q 006482          373 CNAADERAKILASEV  387 (643)
Q Consensus       373 ~~aA~ERak~LAaEV  387 (643)
                      |.+..+|-..|+.+-
T Consensus       403 v~~s~~rl~~L~~qW  417 (594)
T PF05667_consen  403 VEASEQRLVELAQQW  417 (594)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            455555555555543

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=93.03  E-value=4.6  Score=46.08  Aligned_cols=61  Identities=20%  Similarity=0.272  Sum_probs=48.9

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHH-----hhhHHHHHHHHHHhh
Q 006482          532 MIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEH-----QTQRLELLTAQNMAN  592 (643)
Q Consensus       532 mI~nInaLisEla~Ere~l~~aL~~es~~~s~Lk~lN~ELsrKLE~-----qTQRLELltsq~m~~  592 (643)
                      +..-|.+|=.+|++++..--++|......+.+|++.=..|+-.|+.     ++=+.|+..=+.|..
T Consensus       322 L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRkLLe  387 (546)
T KOG0977|consen  322 LEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAYRKLLE  387 (546)
T ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHHHHhc
Confidence            4455667777888899999999999999999999888887777664     456779999899876

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=93.01  E-value=6.5  Score=47.77  Aligned_cols=135  Identities=27%  Similarity=0.306  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHH
Q 006482          310 LEASRALSESLAAENSSLTDSYNQ-------QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI  382 (643)
Q Consensus       310 L~~s~~l~esLa~ENsaLt~~yNq-------Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~  382 (643)
                      .....+..+.|..|-+++-+++.+       |-..-..|+.+.++|+..++-...+++.+..|+.-++...        .
T Consensus       443 ~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l--------~  514 (1041)
T KOG0243|consen  443 KKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATL--------K  514 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H
Confidence            334444555666666555554444       4444459999999999999999999999999998865443        3


Q ss_pred             HHHHHHh----HHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhC
Q 006482          383 LASEVIG----LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG  455 (643)
Q Consensus       383 LAaEVV~----LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka~~  455 (643)
                      +.-+||.    +|+++.+.   ..++++.+++...+++.+-+++....+.=++=+..+.-++.+-..+-.-|-+..+
T Consensus       515 ~~e~ii~~~~~se~~l~~~---a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~~~~~~~~~l~~~~~~~~~~v~  588 (1041)
T KOG0243|consen  515 EEEEIISQQEKSEEKLVDR---ATKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQEVIDDFQSQLSENLSTLHGLVA  588 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHhhhhhHHHHHHHHHHh
Confidence            3344443    44444433   7788999999999999999999988887777778888887666544444444433

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=92.98  E-value=7.6  Score=41.59  Aligned_cols=63  Identities=21%  Similarity=0.385  Sum_probs=51.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 006482          286 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ  355 (643)
Q Consensus       286 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ  355 (643)
                      -.|+.|+-.++++       -.|.|+=+-+|-+.|-..|..|+.++..-...++...+.|.+|+-|+..-
T Consensus        61 y~Didavt~lLeE-------kerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~k  123 (306)
T PF04849_consen   61 YNDIDAVTRLLEE-------KERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMK  123 (306)
T ss_pred             hhhHHHHHHHHHH-------HhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666666665       46889999999999999999999999888888888888888888886543

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=92.96  E-value=11  Score=37.59  Aligned_cols=45  Identities=20%  Similarity=0.288  Sum_probs=27.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006482          286 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDS  330 (643)
Q Consensus       286 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~  330 (643)
                      ..-|.-+..---|.|..=+.|...|-...+-+..-...|..++..
T Consensus         8 e~af~~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~e   52 (201)
T PF13851_consen    8 EKAFQEIKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAE   52 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344666666666777777777776666666555555555554443

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=92.96  E-value=12  Score=47.85  Aligned_cols=155  Identities=24%  Similarity=0.330  Sum_probs=88.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-----
Q 006482          288 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF-----  362 (643)
Q Consensus       288 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l-----  362 (643)
                      +|.-|--|.+.++.++--|.+.+.+=....+.|-++++.+-..==+---.+..++.++|.|+.++.-....+...     
T Consensus        81 e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~  160 (1822)
T KOG4674|consen   81 ELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLS  160 (1822)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555666666667777777777666666666666666652111111122222334444444443333333322     


Q ss_pred             ----------------HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhh----hhhhHHHHhhhHHHHHHHHHHh
Q 006482          363 ----------------RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSN----ELKLERQLENSQSEISSYKKKI  422 (643)
Q Consensus       363 ----------------~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~----eLKlerele~l~~E~~s~~~ql  422 (643)
                                      ..++.+--++...--.-++-|..|.-.--++.+.+|-.    ...|+..|.++......|..++
T Consensus       161 e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~  240 (1822)
T KOG4674|consen  161 ELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKN  240 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            22233333333333333445555666666677777777    7777888888888888888888


Q ss_pred             hhHHHhhhhhHHHHHHHHHH
Q 006482          423 SSLEKERQDFQSTIEALQEE  442 (643)
Q Consensus       423 sslekeR~~l~s~i~aLQEE  442 (643)
                      ..+...+.+|...|.-+..+
T Consensus       241 ~~l~q~~~eLs~~ie~~~~~  260 (1822)
T KOG4674|consen  241 KSLKQQNEELSKKIESLNLE  260 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            88888888887766655533

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.92  E-value=11  Score=43.51  Aligned_cols=153  Identities=17%  Similarity=0.232  Sum_probs=81.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---hhhh
Q 006482          286 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE---LESF  362 (643)
Q Consensus       286 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~---le~l  362 (643)
                      .....-|++-|+-||+|=-.--++-.++-.--=.|-.|-+.|-.+|-+.-......+.+|+++++-+..+...   +..-
T Consensus         7 eq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~   86 (772)
T KOG0999|consen    7 EQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARD   86 (772)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4456678888888888877666666666666666777777777777777777777777777776644332221   1111


Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH
Q 006482          363 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  440 (643)
Q Consensus       363 ~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQ  440 (643)
                      -.||.-+-+.--+|.|-  .+---|..||..+-++|-.--.-+.|.+.+-...+.+..--..++.+|..|.+.|..+.
T Consensus        87 g~e~EesLLqESaakE~--~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~K  162 (772)
T KOG0999|consen   87 GEEREESLLQESAAKEE--YYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYK  162 (772)
T ss_pred             chhhHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHH
Confidence            22333333322233222  12223445555555444333333333333333333333333455666666666655443

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=92.88  E-value=8.4  Score=47.48  Aligned_cols=58  Identities=24%  Similarity=0.273  Sum_probs=34.4

Q ss_pred             HhhHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHhhHHH---HHHHHHhhhHHHHHHHHHH
Q 006482          533 IHNINALISELALEKEEL----VQALSSELAQSSKLKDLNNEL---SRKLEHQTQRLELLTAQNM  590 (643)
Q Consensus       533 I~nInaLisEla~Ere~l----~~aL~~es~~~s~Lk~lN~EL---srKLE~qTQRLELltsq~m  590 (643)
                      =++|+.-|.=|+...+++    +.+++.=.+........-.+|   ..|+-...+.||-+-.++.
T Consensus      1073 ~~~i~e~i~~lE~~~~~l~~vd~~~i~eY~~k~~~y~~rv~~l~~~t~kr~~~re~l~~Lrk~Rl 1137 (1293)
T KOG0996|consen 1073 EDNINEKIALLEKRVEELREVDLGVIAEYAKKVELYLKRVAELEKFTQKRDEHREKLEELRKRRL 1137 (1293)
T ss_pred             HhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345877777777766766    556665555555544444443   3455566666666666654

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=92.85  E-value=2.7  Score=43.29  Aligned_cols=6  Identities=17%  Similarity=0.224  Sum_probs=3.2

Q ss_pred             hCCCCC
Q 006482          454 SGSGKS  459 (643)
Q Consensus       454 ~~~gk~  459 (643)
                      +-.|..
T Consensus       214 P~dG~V  219 (346)
T PRK10476        214 PFDGRV  219 (346)
T ss_pred             CCCcEE
Confidence            555554

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=92.83  E-value=15  Score=43.15  Aligned_cols=115  Identities=23%  Similarity=0.300  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhh----------hHHH
Q 006482          338 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK----------LERQ  407 (643)
Q Consensus       338 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLK----------lere  407 (643)
                      ..++.+-+-.++.++..|-.++..+..+.++..-++..-..+.+..+.+|+.+.++...+ +.+.-          +-.|
T Consensus       160 r~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~-~~~~qq~a~~~~ql~~~~e  238 (716)
T KOG4593|consen  160 RNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEER-ADHEQQNAELEQQLSLSEE  238 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHhhhH
Confidence            334445555666777777777777777777777777777777777777777776665532 22211          1112


Q ss_pred             HhhhH-------HHHHHHHHHhhhHHHhhh---hhHHHHHHHHHHHHHHHHHHHhh
Q 006482          408 LENSQ-------SEISSYKKKISSLEKERQ---DFQSTIEALQEEKKMMQSKLRKA  453 (643)
Q Consensus       408 le~l~-------~E~~s~~~qlsslekeR~---~l~s~i~aLQEEKklLqskLRka  453 (643)
                      ++.+.       .|....+++++...-+-.   +.+.++.-||||.+.||++|+++
T Consensus       239 le~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~  294 (716)
T KOG4593|consen  239 LEAINKNMKDQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGRL  294 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            22211       222233333333222222   33558889999999999999887

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=92.82  E-value=7.3  Score=43.70  Aligned_cols=65  Identities=25%  Similarity=0.269  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHH
Q 006482          379 RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK  443 (643)
Q Consensus       379 Rak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEK  443 (643)
                      |-+.|+-|+-.|-.-+-+||+..=|+..+.....+.++.++-|+....+.|-.+-..+-..|+||
T Consensus       305 r~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ek  369 (502)
T KOG0982|consen  305 RDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEK  369 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            56667777777777777777777777777777777777777777666666665555555555555

>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins

Probab=92.82  E-value=11  Score=37.38  Aligned_cols=134  Identities=20%  Similarity=0.266  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHH------------hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 006482          306 LQRSLEASRALSESLAAENSSLTDSYNQ------------QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC  373 (643)
Q Consensus       306 LqR~L~~s~~l~esLa~ENsaLt~~yNq------------Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~  373 (643)
                      |.+++..-..-++.+|..+..+......            +......+...+++++...+.+...|+..+..|+++-.+.
T Consensus        58 l~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~  137 (236)
T cd07651          58 LKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKI  137 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            4444444444445555555544444432            2333445566677788888888888888888888877766


Q ss_pred             hhHHHHHHH-HHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH--HHHHH
Q 006482          374 NAADERAKI-LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ--EEKKM  445 (643)
Q Consensus       374 ~aA~ERak~-LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQ--EEKkl  445 (643)
                      ..+...... ...|+--++.|+.+...+--+.+++.+....+...++..-.      .++-.+.+.||  ||.+.
T Consensus       138 e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~------~~~~~~~~~~Q~lEe~Ri  206 (236)
T cd07651         138 NSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWN------REWKAALDDFQDLEEERI  206 (236)
T ss_pred             HHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence            665554322 23566667777776666666666666555555555544333      34667888888  55543

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=92.76  E-value=7.3  Score=44.55  Aligned_cols=59  Identities=25%  Similarity=0.316  Sum_probs=28.0

Q ss_pred             HhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHH
Q 006482          322 AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEV  387 (643)
Q Consensus       322 ~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEV  387 (643)
                      +|..-+.+++..--..+.-|+.+..+|+.+       |..++.++|+..+.-.++.-+.+.|--|+
T Consensus       155 Ae~~~~krr~~~le~e~~~Lk~en~rl~~~-------l~~~r~~ld~Etllr~d~~n~~q~Lleel  213 (546)
T KOG0977|consen  155 AEINTLKRRIKALEDELKRLKAENSRLREE-------LARARKQLDDETLLRVDLQNRVQTLLEEL  213 (546)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            344444444444444444444444444444       44445555555544455555555544444

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=92.66  E-value=26  Score=41.36  Aligned_cols=39  Identities=23%  Similarity=0.509  Sum_probs=20.6

Q ss_pred             HHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 006482          414 EISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK  452 (643)
Q Consensus       414 E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRk  452 (643)
                      ....+..++..+.+++..+...++.+.++.+.++..+..
T Consensus       404 ~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~  442 (908)
T COG0419         404 ALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQ  442 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455555555555555555555555555554444

>PF13514 AAA_27: AAA domain

Probab=92.58  E-value=14  Score=44.61  Aligned_cols=33  Identities=30%  Similarity=0.452  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 006482          336 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN  368 (643)
Q Consensus       336 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErda  368 (643)
                      ..+..++.+++.+++++......++.+..+++.
T Consensus       801 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~  833 (1111)
T PF13514_consen  801 EERERLQEQLEELEEELEQAEEELEELEAELAE  833 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555555555555544

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=92.55  E-value=9.5  Score=45.77  Aligned_cols=139  Identities=19%  Similarity=0.229  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----------HHHHhhHHHHHH----HHHHHHHHHHHHHH--
Q 006482          292 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTD----------SYNQQRSVVNQL----KSEMEKLQEEIKVQ--  355 (643)
Q Consensus       292 LqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~----------~yNqQ~~~v~qL----k~~mE~Lq~Ei~aQ--  355 (643)
                      |+-...+||.+|..++-+|--|+.-++.+-+--..|-.          +.-+-.--|..+    ...++.++++|.-|  
T Consensus       321 lh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn  400 (1265)
T KOG0976|consen  321 LHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKN  400 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455688999999999999999888877654433321          122222223333    33333444433333  


Q ss_pred             -HHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhh----hhhhhHHHHhhhHHHHHHHHHHhhhHHHhhh
Q 006482          356 -LVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS----NELKLERQLENSQSEISSYKKKISSLEKERQ  430 (643)
Q Consensus       356 -~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS----~eLKlerele~l~~E~~s~~~qlsslekeR~  430 (643)
                       ..-++..+-.-.+|.-+...|-||+-.|-.+.+-++-+|-.+++    .+.+.++-++.-..=|.+.+...-+++|.|.
T Consensus       401 ~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~qrK  480 (1265)
T KOG0976|consen  401 HIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQRK  480 (1265)
T ss_pred             hhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhhcc
Confidence             23345557777899999999999999999999999999887753    5667777777766666777777666666653

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=92.54  E-value=11  Score=37.65  Aligned_cols=155  Identities=19%  Similarity=0.235  Sum_probs=93.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-HhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006482          286 NEDFAALEQHIEDLTQEKFALQRSLEASRAL----SESLA-AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE  360 (643)
Q Consensus       286 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l----~esLa-~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le  360 (643)
                      ..+-+.|++.|++...+--.+++.|++-..-    .+.++ .--+.|..+.++.-..+.+++.++-.+..++..+....+
T Consensus        37 ~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~  116 (240)
T PF12795_consen   37 KKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPE  116 (240)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHH
Confidence            3455677888888888888888877766432    11111 012456777777777888888888888888877777777


Q ss_pred             hhHHHHHHHhhhhhhHHHHHHH----------------HHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhh
Q 006482          361 SFRNEYANVRLECNAADERAKI----------------LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS  424 (643)
Q Consensus       361 ~l~aErdaArle~~aA~ERak~----------------LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlss  424 (643)
                      .+......++....++..+-..                |-+|+..|+.++..++-.-+-.-.--+=++..+.-+.+++.-
T Consensus       117 ~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~  196 (240)
T PF12795_consen  117 RAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQR  196 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777766666665433                344444444444433222111111111133444455666666


Q ss_pred             HHHhhhhhHHHHHHHH
Q 006482          425 LEKERQDFQSTIEALQ  440 (643)
Q Consensus       425 lekeR~~l~s~i~aLQ  440 (643)
                      ++...+.|+..|+...
T Consensus       197 l~~~l~~Lq~~ln~~R  212 (240)
T PF12795_consen  197 LQQQLQALQNLLNQKR  212 (240)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6667777777776655

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=92.45  E-value=4.4  Score=37.88  Aligned_cols=65  Identities=26%  Similarity=0.314  Sum_probs=47.4

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHH---HHHHHHHHhHHHHHHHH
Q 006482          333 QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA---KILASEVIGLEEKALRL  397 (643)
Q Consensus       333 qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERa---k~LAaEVV~LEEk~l~L  397 (643)
                      -....|+.|+..+.+++-|+.+-...++.+..+|+.++.+....+.+.   +..+.++-.|+.++..+
T Consensus        13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l   80 (120)
T PF12325_consen   13 PSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEEL   80 (120)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345688999999999999999999999999999999777666655554   44444444444444433

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=92.44  E-value=9.4  Score=38.53  Aligned_cols=70  Identities=20%  Similarity=0.347  Sum_probs=53.6

Q ss_pred             hhhHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHH-hhhHHHHHHHHHHhhhcc
Q 006482          526 PHDQMR-MIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEH-QTQRLELLTAQNMANENI  595 (643)
Q Consensus       526 p~DQlR-mI~nInaLisEla~Ere~l~~aL~~es~~~s~Lk~lN~ELsrKLE~-qTQRLELltsq~m~~e~~  595 (643)
                      |.++.+ +..+|.+.|++....=..|..+|........+..++|..-...|+. +.+..++..-+..+.+.+
T Consensus       172 ~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L  243 (264)
T PF06008_consen  172 PQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETL  243 (264)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444 4599999999999999999999999999999999999988888874 444455555555554443

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=92.12  E-value=3.1  Score=42.35  Aligned_cols=105  Identities=25%  Similarity=0.301  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHH
Q 006482          337 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS  416 (643)
Q Consensus       337 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~  416 (643)
                      .|.++++++++.++++..+.-...-|..++       .-|.+-+..|+.+...+|+-..+|+..--+.+++-+.|..++.
T Consensus        13 rL~q~eee~~~a~~~L~e~e~~a~~Leek~-------k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~   85 (246)
T PF00769_consen   13 RLRQMEEEMRRAQEALEESEETAEELEEKL-------KQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELR   85 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555554444433333333333       3344455667777777777777777666665555555555555


Q ss_pred             HHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHH
Q 006482          417 SYKKKISSLEKERQDFQSTIEALQEEKKMMQS  448 (643)
Q Consensus       417 s~~~qlsslekeR~~l~s~i~aLQEEKklLqs  448 (643)
                      .+...+..+..++..-......||.+-...+.
T Consensus        86 e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~  117 (246)
T PF00769_consen   86 EAEAEIARLEEESERKEEEAEELQEELEEARE  117 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555444444444444444444333333

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=92.03  E-value=5.9  Score=48.14  Aligned_cols=119  Identities=29%  Similarity=0.401  Sum_probs=70.6

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHhhhhhhHH---------------------HHHHHHHHHHH
Q 006482          333 QQRSVVNQLKSEMEKLQEEIKVQLVELESF---RNEYANVRLECNAAD---------------------ERAKILASEVI  388 (643)
Q Consensus       333 qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l---~aErdaArle~~aA~---------------------ERak~LAaEVV  388 (643)
                      +-...+..|+-++++|++|+.--+-.--.+   +.|.|+.+..+..++                     |=-++|-+|--
T Consensus       202 ~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmDs~fykdRveelkedN~vLleeke  281 (1195)
T KOG4643|consen  202 RLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKE  281 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence            334556666666777776665444333333   334444444444333                     22233333334


Q ss_pred             hHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhCC
Q 006482          389 GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGS  456 (643)
Q Consensus       389 ~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka~~~  456 (643)
                      -|||++..+|-.     .+-..+..+|-.|++|+--++-+|.-.|.-++.|++|-.-||..=++.-++
T Consensus       282 MLeeQLq~lrar-----se~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~  344 (1195)
T KOG4643|consen  282 MLEEQLQKLRAR-----SEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQ  344 (1195)
T ss_pred             HHHHHHHHHHhc-----cccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            444444433322     111235566788899999999999999999999999999998865555443

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=92.00  E-value=23  Score=41.79  Aligned_cols=149  Identities=19%  Similarity=0.203  Sum_probs=82.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHH--HHHHHHH----------HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 006482          288 DFAALEQHIEDLTQEKFALQR--SLEASRA----------LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ  355 (643)
Q Consensus       288 ~faaLqqhIeDLT~EKfaLqR--~L~~s~~----------l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ  355 (643)
                      +.-.|-|++.+++++..+=.|  ++.-...          --+.+-..+.++-..-=--|+.....++..-+|-+|+.-.
T Consensus       401 E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ek  480 (698)
T KOG0978|consen  401 ETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREK  480 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455777777666555444  2222221          1112222233333333345667777778888888887777


Q ss_pred             HHHhhhhHHHHHHHhhhhhhHHHHHH--------------HHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHH
Q 006482          356 LVELESFRNEYANVRLECNAADERAK--------------ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKK  421 (643)
Q Consensus       356 ~~~le~l~aErdaArle~~aA~ERak--------------~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~q  421 (643)
                      .-+.=.++.|++.+.+......+-=.              .+-..|..||++...+-+.+=++.+++.-+..-++.++++
T Consensus       481 dd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~  560 (698)
T KOG0978|consen  481 DDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKK  560 (698)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHH
Confidence            77777778888887777766554322              2333455566666666666555555555555555555555


Q ss_pred             hhhHHHhhhhhHHHH
Q 006482          422 ISSLEKERQDFQSTI  436 (643)
Q Consensus       422 lsslekeR~~l~s~i  436 (643)
                      +-.+.+...+|+.-+
T Consensus       561 ~~e~~~~~~~Lq~~~  575 (698)
T KOG0978|consen  561 AQEAKQSLEDLQIEL  575 (698)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555555554444433

>PLN03188 kinesin-12 family protein; Provisional

Probab=91.98  E-value=3.1  Score=51.32  Aligned_cols=68  Identities=22%  Similarity=0.289  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHH-HH
Q 006482          303 KFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADER-AK  381 (643)
Q Consensus       303 KfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ER-ak  381 (643)
                      |-|||||++.--++.|+-|+    |-++||+.-..-....+=+....                ++||+....-|-.| ++
T Consensus      1099 ~~a~q~am~ghar~~e~ya~----l~ek~~~ll~~hr~i~egi~dvk----------------kaaakag~kg~~~~f~~ 1158 (1320)
T PLN03188       1099 KEAMQMAMEGHARMLEQYAD----LEEKHIQLLARHRRIQEGIDDVK----------------KAAARAGVRGAESKFIN 1158 (1320)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHhccccchHHHHH
Confidence            45778888887778877775    66777765544333333332211                23444444333333 78


Q ss_pred             HHHHHHHhH
Q 006482          382 ILASEVIGL  390 (643)
Q Consensus       382 ~LAaEVV~L  390 (643)
                      +||||+-.|
T Consensus      1159 alaae~s~l 1167 (1320)
T PLN03188       1159 ALAAEISAL 1167 (1320)
T ss_pred             HHHHHHHHH
Confidence            999998554

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=91.89  E-value=29  Score=40.15  Aligned_cols=229  Identities=24%  Similarity=0.282  Sum_probs=118.5

Q ss_pred             HHHHHhhhHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHH-HHHHHh
Q 006482          318 ESLAAENSSLTDSYNQQRSVVNQLKS-------EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL-ASEVIG  389 (643)
Q Consensus       318 esLa~ENsaLt~~yNqQ~~~v~qLk~-------~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~L-AaEVV~  389 (643)
                      ++|-..-.+|.++.|--.+-|+++++       .|++|+.||..-..+++.++.|+|..+--.     +=|.+ ++||  
T Consensus       262 eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I-----e~Q~iS~~dv--  334 (581)
T KOG0995|consen  262 ESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI-----ELQGISGEDV--  334 (581)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCCCHHHH--
Confidence            34444455566666655555555543       456666666666666677777766643211     11122 2222  


Q ss_pred             HHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCC-ccc
Q 006482          390 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKT-AAS  468 (643)
Q Consensus       390 LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka~~~gk~~~~~k~-~~~  468 (643)
                           .+.+.+--+++|+|..+..+++++.+++=.++.+-   +..++.++.--..+.+.+|++...  ...+.++ +..
T Consensus       335 -----e~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~---~~~f~~le~~~~~~~~l~~~i~l~--~~~~~~n~~~~  404 (581)
T KOG0995|consen  335 -----ERMNLERNKLKRELNKIQSELDRLSKEVWELKLEI---EDFFKELEKKFIDLNSLIRRIKLG--IAENSKNLERN  404 (581)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH--HHHHhccCCcC
Confidence                 22333444556666666666666666665543332   235566665556667777776543  1111111 000


Q ss_pred             ccccccccccccccCccccCCCCCcccCCCCCCCCCCCCCCCCccccccccCccccchhhHHHH------HhhHHHHHHH
Q 006482          469 TVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRM------IHNINALISE  542 (643)
Q Consensus       469 ~kDASTSTdDLai~d~~~~sSn~e~~~s~s~~~~~~~~~P~~P~~G~~~l~~~~vsIp~DQlRm------I~nInaLisE  542 (643)
                      ...+.+-.-|+                 .      .+-.|++-+-    +.+-.-.|-.-++..      ++|.+++|.|
T Consensus       405 pe~~~~~~~d~-----------------k------~~V~~~l~el----~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E  457 (581)
T KOG0995|consen  405 PERAATNGVDL-----------------K------SYVKPLLKEL----LDEISEELHEAENELETLQEHFSNKASTIEE  457 (581)
T ss_pred             CccCccccccc-----------------h------hHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00111111111                 0      0001110000    000001222233322      5788888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHhhHHHHH-------HHHHhhhHHHHHHHHHH
Q 006482          543 LALEKEELVQALSSELAQSSKLKDLNNELSR-------KLEHQTQRLELLTAQNM  590 (643)
Q Consensus       543 la~Ere~l~~aL~~es~~~s~Lk~lN~ELsr-------KLE~qTQRLELltsq~m  590 (643)
                      +-.....+---|....+.|-..+..+-|+..       +||-+.+.|.|..=+.|
T Consensus       458 ~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m  512 (581)
T KOG0995|consen  458 KIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSM  512 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888888888888765       47777777766655555

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=91.79  E-value=7.3  Score=39.76  Aligned_cols=50  Identities=26%  Similarity=0.393  Sum_probs=24.8

Q ss_pred             HHHhhHHHHHHHHHH----HHHHHHHHHHHHHHH--hHHHHHhhHHHHHHHHHhhhHHH
Q 006482          531 RMIHNINALISELAL----EKEELVQALSSELAQ--SSKLKDLNNELSRKLEHQTQRLE  583 (643)
Q Consensus       531 RmI~nInaLisEla~----Ere~l~~aL~~es~~--~s~Lk~lN~ELsrKLE~qTQRLE  583 (643)
                      +|=+-+.+|-+||+.    +|...+..|+.+--+  .++.+.|..   -+.+.+.||+.
T Consensus       186 ~lq~QL~~L~~EL~~~kde~k~T~~D~~h~en~~~g~~ky~tl~~---i~~g~tk~ri~  241 (246)
T PF00769_consen  186 RLQEQLKELKSELEQLKDEEKQTQLDIIHAENVRAGRDKYKTLRQ---IRQGNTKQRID  241 (246)
T ss_dssp             HHHHHHHHHHHHHHTTB-CCG--HHHHHHHHHHHTT--HHHHHHH---HT-S-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHhchhHHHHHHH---HhcCCHHHHHH
Confidence            444555667777765    457777777776433  234444432   34455666553

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PRK01156 chromosome segregation protein; Provisional

Probab=91.62  E-value=32  Score=40.12  Aligned_cols=70  Identities=11%  Similarity=0.175  Sum_probs=34.7

Q ss_pred             HHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHH----------HHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhH
Q 006482          356 LVELESFRNEYANVRLECNAADERAKILASEVIGLEE----------KALRLRSNELKLERQLENSQSEISSYKKKISSL  425 (643)
Q Consensus       356 ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEE----------k~l~LRS~eLKlerele~l~~E~~s~~~qlssl  425 (643)
                      ...++....++...+..+....+....+..++-.|+.          ++.+++..--+++.+++.+..++..++.++..+
T Consensus       628 ~~~le~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l  707 (895)
T PRK01156        628 ANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEIL  707 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555556666666666666665555555544433          334444444444444444444444444444433

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=91.58  E-value=26  Score=41.69  Aligned_cols=96  Identities=26%  Similarity=0.335  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhH---HHHHHHHHHH-HHHHHHHHHHHHh--------
Q 006482          292 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRS---VVNQLKSEME-KLQEEIKVQLVEL--------  359 (643)
Q Consensus       292 LqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~---~v~qLk~~mE-~Lq~Ei~aQ~~~l--------  359 (643)
                      ++..|+-|+-|+-.--..+..+|.+++.|-..|-++-..||.-.+   .-+.||.|-. +-++.+..|...|        
T Consensus       521 ~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~E  600 (961)
T KOG4673|consen  521 LQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKE  600 (961)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677777777766677777777888877777777777776655   2344442211 1111111111111        


Q ss_pred             -------hhhHHHHHHHhhhhhhHHHHHHHHHHHH
Q 006482          360 -------ESFRNEYANVRLECNAADERAKILASEV  387 (643)
Q Consensus       360 -------e~l~aErdaArle~~aA~ERak~LAaEV  387 (643)
                             .-|+.|..-.+.+..+|.-|+..|.-+|
T Consensus       601 q~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v  635 (961)
T KOG4673|consen  601 QQAARREDMFRGEIEDLQRRLQAAERRCEELIQQV  635 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence                   2346666666667777777776665554

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family

Probab=91.57  E-value=10  Score=39.52  Aligned_cols=63  Identities=14%  Similarity=0.214  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh--hhhhHHHHHHHHHHHHHhHHHHHHHHh
Q 006482          336 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL--ECNAADERAKILASEVIGLEEKALRLR  398 (643)
Q Consensus       336 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArl--e~~aA~ERak~LAaEVV~LEEk~l~LR  398 (643)
                      ..+.-++.+++++++++..-..+|..|+.+..-.-.  ......+-...|-.+.+.+|.++..+|
T Consensus       170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~  234 (362)
T TIGR01010       170 DTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLR  234 (362)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556666666666666666666666555433211  112223333444444444444444443

This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=91.54  E-value=1.4  Score=38.99  Aligned_cols=67  Identities=18%  Similarity=0.287  Sum_probs=50.3

Q ss_pred             hHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhC
Q 006482          389 GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG  455 (643)
Q Consensus       389 ~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka~~  455 (643)
                      .||+||.+.=----=|+-|+++++.+-..+...+..+..-|..|....+.|++|...-|.|||...+
T Consensus         8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG   74 (79)
T PRK15422          8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG   74 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4777776553333334566666766666677777777777888999999999999999999998765

>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins

Probab=91.40  E-value=17  Score=36.41  Aligned_cols=130  Identities=15%  Similarity=0.184  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHH-----------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 006482          305 ALQRSLEASRALSESLAAENSSLTDSYNQQRSVV-----------NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC  373 (643)
Q Consensus       305 aLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v-----------~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~  373 (643)
                      .|..++..-..-++.+|.-+..|.++.+.....+           ..+...|+.++...+.+...+.-.+.-|.++-.+.
T Consensus        57 sl~~aw~~i~~e~e~~a~~H~~la~~L~~~v~~l~~~~~~~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~  136 (239)
T cd07647          57 TLKSSWDSLRKETENVANAHIQLAQSLREEAEKLEEFREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREK  136 (239)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555666666666655555543333           34456666666666666777777777777765555


Q ss_pred             hhHHHH---HHHH--HHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH
Q 006482          374 NAADER---AKIL--ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  440 (643)
Q Consensus       374 ~aA~ER---ak~L--AaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQ  440 (643)
                      ..|...   ++..  ..|+--++.|+.+.+..--+.+.+.......+..++.+-.      .++..+.+.+|
T Consensus       137 e~a~~~~~~~~~~~~~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~~~------~~~~~~~~~~Q  202 (239)
T cd07647         137 DKAEQAYEKSSSGAQPKEAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDARVEWE------SEHATACQVFQ  202 (239)
T ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence            554322   2221  2455566666665555555544444444333333333222      23555677777

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=91.38  E-value=24  Score=38.08  Aligned_cols=150  Identities=21%  Similarity=0.365  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006482          290 AALEQHIEDLTQEKFALQRSLEASRA-----------LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE  358 (643)
Q Consensus       290 aaLqqhIeDLT~EKfaLqR~L~~s~~-----------l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~  358 (643)
                      ||++.|=+-.|.+ --|.++++++++           =+-.|-+.|+-|+.....--+.++-|+-++-..+.-+.---++
T Consensus       102 aAi~d~dqsq~sk-rdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~  180 (305)
T PF14915_consen  102 AAIQDHDQSQTSK-RDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLA  180 (305)
T ss_pred             HHHhhHHHHHhhH-HHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444443 345666666665           3446778888899888888888899999998888888888889


Q ss_pred             hhhhHHHHHHHhhhhhhH-----HHHHH--HHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhh
Q 006482          359 LESFRNEYANVRLECNAA-----DERAK--ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD  431 (643)
Q Consensus       359 le~l~aErdaArle~~aA-----~ERak--~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~  431 (643)
                      |+.+..+..-++....+.     .|+++  ..-+-=-.||||+-++-|.-+=|+.||+.++.+...-++-|--+   -..
T Consensus       181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~Vini---Q~~  257 (305)
T PF14915_consen  181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINI---QDQ  257 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHH
Confidence            998876666655443332     23332  23334457899999999999999999999998888777777665   334


Q ss_pred             hHHHHHHHHHHH
Q 006482          432 FQSTIEALQEEK  443 (643)
Q Consensus       432 l~s~i~aLQEEK  443 (643)
                      ++.+|..||-|.
T Consensus       258 f~d~~~~L~ae~  269 (305)
T PF14915_consen  258 FQDIVKKLQAES  269 (305)
T ss_pred             HHHHHHHHHHHH
Confidence            666778877443

>PRK11519 tyrosine kinase; Provisional

Probab=91.00  E-value=10  Score=43.73  Aligned_cols=17  Identities=24%  Similarity=0.237  Sum_probs=9.8

Q ss_pred             ccCCCCCcccccccCCC
Q 006482           58 KISPQNSVSTLFQSKPS   74 (643)
Q Consensus        58 ~is~q~s~~~~~q~~~s   74 (643)
                      ..+|.=.+++..|+++.
T Consensus        51 ~~~PvY~a~a~l~Ie~~   67 (719)
T PRK11519         51 FATPIYSADALVQIEQN   67 (719)
T ss_pred             hCCceeeeeEEEEEccC
Confidence            34456666666665544

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=90.95  E-value=40  Score=39.92  Aligned_cols=32  Identities=19%  Similarity=0.227  Sum_probs=19.8

Q ss_pred             HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHH
Q 006482          318 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ  349 (643)
Q Consensus       318 esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq  349 (643)
                      +.|..+.+++.+++......+.++.+.-.+|+
T Consensus       228 ~~l~~e~e~l~~~~~el~~~~~~~~~~~~~l~  259 (908)
T COG0419         228 EELEQEIEALEERLAELEEEKERLEELKARLL  259 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34677777777777776666666666333333

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=90.88  E-value=0.069  Score=60.60  Aligned_cols=74  Identities=26%  Similarity=0.394  Sum_probs=0.0

Q ss_pred             hhHHHHHHHHHHHHHhHHHHHHH---HhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHH
Q 006482          374 NAADERAKILASEVIGLEEKALR---LRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQ  447 (643)
Q Consensus       374 ~aA~ERak~LAaEVV~LEEk~l~---LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLq  447 (643)
                      ..-.|+-..|---.+.||+.+.+   +|+..-.+++++..+..++....+++..++.+...|+..+++|++||..|.
T Consensus       335 k~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~  411 (713)
T PF05622_consen  335 KELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQ  411 (713)
T ss_dssp             -----------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444555554443   233333334444444444444444444455555555555555555555443

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=90.80  E-value=43  Score=40.01  Aligned_cols=61  Identities=16%  Similarity=0.183  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHHHHHHHHHHhhhccccCCCC
Q 006482          541 SELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFRQPD  601 (643)
Q Consensus       541 sEla~Ere~l~~aL~~es~~~s~Lk~lN~ELsrKLE~qTQRLELltsq~m~~e~~~a~~~d  601 (643)
                      .-|+.=|..|..+=...-++-..|+.+|-+|.|||++...|-|-++.+-=+.--++.|+|.
T Consensus       587 qqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE  647 (961)
T KOG4673|consen  587 QQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIE  647 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHH
Confidence            3333334444444444455667899999999999999999999888765544444455553

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=90.74  E-value=34  Score=41.46  Aligned_cols=65  Identities=20%  Similarity=0.184  Sum_probs=47.1

Q ss_pred             cCccccchhhHHHHHhhHHHHHHHHHHH------HHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHHHHHHHHHHhh
Q 006482          519 EGLAVNIPHDQMRMIHNINALISELALE------KEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMAN  592 (643)
Q Consensus       519 ~~~~vsIp~DQlRmI~nInaLisEla~E------re~l~~aL~~es~~~s~Lk~lN~ELsrKLE~qTQRLELltsq~m~~  592 (643)
                      +|+----.+.+=.||+-|.+|+..++..      -+.|-.++.-+..+|..|++         |.|.-+|++--+.+.+-
T Consensus       451 egsrrraIeQcnemv~rir~l~~sle~qrKVeqe~emlKaen~rqakkiefmkE---------eiQethldyR~els~lA  521 (1265)
T KOG0976|consen  451 EGSRRRAIEQCNEMVDRIRALMDSLEKQRKVEQEYEMLKAENERQAKKIEFMKE---------EIQETHLDYRSELSELA  521 (1265)
T ss_pred             hhhHhhHHHHHHHHHHHHHHHhhChhhhcchHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHh
Confidence            3333455689999999999999988754      46677777777888888876         45666777766666544

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=90.71  E-value=16  Score=35.10  Aligned_cols=78  Identities=24%  Similarity=0.342  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHH
Q 006482          338 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI  415 (643)
Q Consensus       338 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~  415 (643)
                      ..-|++.++-|++++..-.-.++.+-.+-.+++.+|..-.+.-..++.+.-.|+..+-.+|+.--.+.++++..+..|
T Consensus        19 ~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv   96 (140)
T PF10473_consen   19 KDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKV   96 (140)
T ss_pred             HhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555555555555555555555555566666555555556666666666666666655554444444443333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PRK11281 hypothetical protein; Provisional

Probab=90.65  E-value=52  Score=40.74  Aligned_cols=47  Identities=13%  Similarity=0.167  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHH
Q 006482          339 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILAS  385 (643)
Q Consensus       339 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAa  385 (643)
                      .++..++.+.|+++...-..+......-.+||..-.+|..|.+.+-.
T Consensus       131 ~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~  177 (1113)
T PRK11281        131 AQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRN  177 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444333333444444444455555555555554443

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=90.55  E-value=22  Score=36.21  Aligned_cols=23  Identities=35%  Similarity=0.491  Sum_probs=12.3

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHH
Q 006482          532 MIHNINALISELALEKEELVQAL  554 (643)
Q Consensus       532 mI~nInaLisEla~Ere~l~~aL  554 (643)
                      .|.-+..+.-||-.|+.+|-.-|
T Consensus       166 ~ieEy~~~teeLR~e~s~LEeql  188 (193)
T PF14662_consen  166 TIEEYRSITEELRLEKSRLEEQL  188 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555556655555554443

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=90.49  E-value=16  Score=36.73  Aligned_cols=62  Identities=19%  Similarity=0.264  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 006482          307 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN  368 (643)
Q Consensus       307 qR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErda  368 (643)
                      .+.=.++++-.+.+++|-..|.+.|-+...++..|+...++++..+..|..+++.+..+.+.
T Consensus        34 ~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~   95 (251)
T PF11932_consen   34 VQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQ   95 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445677778888888888888888888888888888888888888888888888666555

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans

Probab=90.49  E-value=9.9  Score=37.04  Aligned_cols=32  Identities=38%  Similarity=0.614  Sum_probs=27.6

Q ss_pred             hHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhC
Q 006482          424 SLEKERQDFQSTIEALQEEKKMMQSKLRKASG  455 (643)
Q Consensus       424 slekeR~~l~s~i~aLQEEKklLqskLRka~~  455 (643)
                      ....++++|+.-|+.||++-|.|+.+++..+.
T Consensus        86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~  117 (158)
T PF09744_consen   86 QWRQERKDLQSQVEQLEEENRQLELKLKNLSD  117 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            56788899999999999999999998877654

Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=90.45  E-value=22  Score=40.73  Aligned_cols=18  Identities=17%  Similarity=0.126  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 006482          436 IEALQEEKKMMQSKLRKA  453 (643)
Q Consensus       436 i~aLQEEKklLqskLRka  453 (643)
                      +++.++--..|..|+.++
T Consensus       385 ~~~~~~~Y~~ll~r~~e~  402 (754)
T TIGR01005       385 AAAKRQLYESYLTNYRQA  402 (754)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333334455555554

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=90.43  E-value=15  Score=34.02  Aligned_cols=30  Identities=33%  Similarity=0.598  Sum_probs=21.0

Q ss_pred             hhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 006482          423 SSLEKERQDFQSTIEALQEEKKMMQSKLRK  452 (643)
Q Consensus       423 sslekeR~~l~s~i~aLQEEKklLqskLRk  452 (643)
                      ..++++...+..-++.|.+.=++|+..|-.
T Consensus       101 ~~le~e~~~~~~r~~dL~~QN~lLh~QlE~  130 (132)
T PF07926_consen  101 EQLEKELSELEQRIEDLNEQNKLLHDQLES  130 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            345555556667777888888889887743

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1

Probab=90.41  E-value=23  Score=36.21  Aligned_cols=116  Identities=21%  Similarity=0.224  Sum_probs=75.5

Q ss_pred             HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHH-----HHHHh
Q 006482          315 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILA-----SEVIG  389 (643)
Q Consensus       315 ~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LA-----aEVV~  389 (643)
                      .|++.|-.+-..|..=.+.|......+...|+++|.-...+...|+.-+..|.++-.+...|......+-     .|+--
T Consensus        78 ~ia~~L~~~~~~l~~f~~~qke~rK~~e~~~eK~qk~~~~~~k~l~ksKk~Ye~~Cke~~~a~q~~~k~~~~~t~keleK  157 (242)
T cd07671          78 QLAGMLREELKSLEEFRERQKEQRKKYEAVMERVQKSKVSLYKKTMESKKTYEQRCREADEAEQTFERSSSTGNPKQSEK  157 (242)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHH
Confidence            4666676666667777788888999999999999999999999999999888887777666643221111     33434


Q ss_pred             HHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhh----hhHHHHHHHH
Q 006482          390 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ----DFQSTIEALQ  440 (643)
Q Consensus       390 LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~----~l~s~i~aLQ  440 (643)
                      ++.|+.+.+.+--+.          ...|+.-|..+.+-|.    ++..+.+.+|
T Consensus       158 ~~~K~~k~~~~~~~a----------~~~Y~~~v~~l~~~~~~w~~~~~~~~~~~Q  202 (242)
T cd07671         158 SQNKAKQCRDAATEA----------ERVYKQNIEQLDKARTEWETEHILTCEVFQ  202 (242)
T ss_pred             HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444333333333          3445555555554443    3556777777

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR

>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway

Probab=90.33  E-value=9.8  Score=31.89  Aligned_cols=56  Identities=14%  Similarity=0.275  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH
Q 006482          378 ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  440 (643)
Q Consensus       378 ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQ  440 (643)
                      ........-+..|+..+...       +.+++.+..++..++..+..+..++.-+..+.+.-+
T Consensus        45 ~~~~~~~~~~~~l~~~i~~~-------~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e~~~  100 (123)
T PF02050_consen   45 AQLRNYQRYISALEQAIQQQ-------QQELERLEQEVEQAREELQEARRERKKLEKLKERRR  100 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555555555544       444445555555555555555555555555544433

Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=90.13  E-value=37  Score=38.17  Aligned_cols=118  Identities=25%  Similarity=0.291  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHH
Q 006482          307 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE  386 (643)
Q Consensus       307 qR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaE  386 (643)
                      ...|+..+..-+....|-..|.....-....+...|.++.++++....--..+.+|..|....+.+...+.+.-...-..
T Consensus       287 ~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~  366 (522)
T PF05701_consen  287 KKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEA  366 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhh
Confidence            34556666666666666667776666677777777777777777766666667777777777776665544333322223


Q ss_pred             HHhHHHHHHHHhhh-------hhhhHHHHhhhHHHHHHHHHHhhh
Q 006482          387 VIGLEEKALRLRSN-------ELKLERQLENSQSEISSYKKKISS  424 (643)
Q Consensus       387 VV~LEEk~l~LRS~-------eLKlerele~l~~E~~s~~~qlss  424 (643)
                      +..|-..+.++.+.       .-..+.++..++.+++.++..+..
T Consensus       367 ~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t  411 (522)
T PF05701_consen  367 MSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKT  411 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444333       333344444444444444444444

Several sequences in this family are described as being myosin heavy chain-like.

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=90.04  E-value=31  Score=37.24  Aligned_cols=119  Identities=24%  Similarity=0.397  Sum_probs=61.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh------h--hhhHHHHHHHHHHHHHhHHHHHHHH-------h
Q 006482          334 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL------E--CNAADERAKILASEVIGLEEKALRL-------R  398 (643)
Q Consensus       334 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArl------e--~~aA~ERak~LAaEVV~LEEk~l~L-------R  398 (643)
                      |-..|+.|+..+.+|+.+..+....|+.|+.|------      +  .|--.-|.-.|++|=-.|++++-+-       |
T Consensus       133 qE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~  212 (310)
T PF09755_consen  133 QEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPR  212 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcc
Confidence            33445556666666665555555555555443211000      0  1222334455555555555554420       0


Q ss_pred             ---------hhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhh----hHHHHHHHHHHHHHHHHHHHh
Q 006482          399 ---------SNELKLERQLENSQSEISSYKKKISSLEKERQD----FQSTIEALQEEKKMMQSKLRK  452 (643)
Q Consensus       399 ---------S~eLKlerele~l~~E~~s~~~qlsslekeR~~----l~s~i~aLQEEKklLqskLRk  452 (643)
                               ..-=++...+..|+.|+.++++++...+++...    ...-...+++|-+.||-+|+.
T Consensus       213 d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~ireEN~rLqr~L~~  279 (310)
T PF09755_consen  213 DTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEIREENRRLQRKLQR  279 (310)
T ss_pred             hHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     001234445557778888888888776665532    112234566666788877764

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=89.98  E-value=8.7  Score=38.56  Aligned_cols=62  Identities=19%  Similarity=0.255  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 006482          290 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE  351 (643)
Q Consensus       290 aaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E  351 (643)
                      +..|+-|+++..||-.|+..+.+-.+=.+.|-..|..+.+....|...+.+|+.+++.++..
T Consensus        38 ~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~   99 (251)
T PF11932_consen   38 QQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEET   99 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999998888888776654

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []

Probab=89.96  E-value=25  Score=36.05  Aligned_cols=103  Identities=17%  Similarity=0.248  Sum_probs=61.0

Q ss_pred             HHHHHHHHhhhHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHH
Q 006482          315 ALSESLAAENSSLTDSYNQQRS--VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE  392 (643)
Q Consensus       315 ~l~esLa~ENsaLt~~yNqQ~~--~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEE  392 (643)
                      ..+++|-..-..+++.+|.-+|  .|.+||..++.++..+++-...+...+..|+.|...       --..=.||-.|=.
T Consensus         9 ~~~d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~-------Rs~sQrEvn~LLq   81 (207)
T PF05546_consen    9 FYMDSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQ-------RSSSQREVNELLQ   81 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Confidence            4556666666778888998876  567777777777776666666666666666655443       2233346655533


Q ss_pred             H-----------HHHHhhhhhhhHHHHhhhHHHHHHHHHHhhh
Q 006482          393 K-----------ALRLRSNELKLERQLENSQSEISSYKKKISS  424 (643)
Q Consensus       393 k-----------~l~LRS~eLKlerele~l~~E~~s~~~qlss  424 (643)
                      |           -..|-.++=-.++..+.++.++..++.+++.
T Consensus        82 RK~sWs~~DleRFT~Lyr~dH~~e~~e~~ak~~l~~aE~~~e~  124 (207)
T PF05546_consen   82 RKHSWSPADLERFTELYRNDHENEQAEEEAKEALEEAEEKVEE  124 (207)
T ss_pred             cccCCChHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            2           3334333444455555566555555555553

The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=89.81  E-value=31  Score=39.96  Aligned_cols=93  Identities=24%  Similarity=0.326  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 006482          290 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV  369 (643)
Q Consensus       290 aaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaA  369 (643)
                      -.|+.-|+.|-.|+-.|..-|+.+.+       +|+.|..-..+|...+.+|...+++++.+..-+..-|+.+..++..+
T Consensus        83 ~~Lq~E~~~L~kElE~L~~qlqaqv~-------~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~  155 (617)
T PF15070_consen   83 QQLQAEAEHLRKELESLEEQLQAQVE-------NNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATA  155 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHH
Confidence            46777777777777777766665544       45555555567888888888888888887766666677776665542


Q ss_pred             hhhhhhHHHHHHHHHHHHHhHHHH
Q 006482          370 RLECNAADERAKILASEVIGLEEK  393 (643)
Q Consensus       370 rle~~aA~ERak~LAaEVV~LEEk  393 (643)
                          -.|-..-+.|=..+..|+++
T Consensus       156 ----SRAlsQN~eLK~QL~Elq~~  175 (617)
T PF15070_consen  156 ----SRALSQNRELKEQLAELQDA  175 (617)
T ss_pred             ----HHHHHhHHHHHHHHHHHHHH
Confidence                22333334555555555553

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=89.74  E-value=37  Score=41.79  Aligned_cols=152  Identities=18%  Similarity=0.229  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHH
Q 006482          308 RSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEV  387 (643)
Q Consensus       308 R~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEV  387 (643)
                      |.|--.+.-.+.|-..-.+....-++-.+++....++|+++..+|..--..|..++.|-.-+..+.+.+...--.|--++
T Consensus       230 rEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~  309 (1200)
T KOG0964|consen  230 RELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKI  309 (1200)
T ss_pred             hHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            44555555556666666666666666677777777778777777777777778888877777777777776665666666


Q ss_pred             HhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh-hCCCCC
Q 006482          388 IGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA-SGSGKS  459 (643)
Q Consensus       388 V~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka-~~~gk~  459 (643)
                      -.|-+++..-+-+.=.....++.+.++|..-+..++.++..+.+++..=+.+..--+.|+.+.|-. +-+|+.
T Consensus       310 kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~  382 (1200)
T KOG0964|consen  310 KDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRY  382 (1200)
T ss_pred             HHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            677776665554444455677788888888899999988888887777666666666666666665 445554

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=89.50  E-value=8.9  Score=42.83  Aligned_cols=18  Identities=22%  Similarity=0.244  Sum_probs=9.1

Q ss_pred             HHHHHhhhHHHHHHHHhh
Q 006482          318 ESLAAENSSLTDSYNQQR  335 (643)
Q Consensus       318 esLa~ENsaLt~~yNqQ~  335 (643)
                      |-|++-|.+|.+.|-+|-
T Consensus        13 qr~~~~~~~laq~~k~~s   30 (459)
T KOG0288|consen   13 QRLIDLNTELAQCEKAQS   30 (459)
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            445555555555554443

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=89.44  E-value=25  Score=35.19  Aligned_cols=118  Identities=18%  Similarity=0.262  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHh
Q 006482          310 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIG  389 (643)
Q Consensus       310 L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~  389 (643)
                      |.-.+.-.+.|.-||-.|-.-.-.|...++...+.=..|-+-|..+.-++-+++..+-.++..+.++.-+-+..-+|+.-
T Consensus        21 l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k  100 (194)
T PF15619_consen   21 LAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLK  100 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334445678889999999888898889888888788888888888899999999999999999999999999999999


Q ss_pred             HHHHHHHHhh--------hhhhhHHHHhhhHHHHHHHHHHhhhHHH
Q 006482          390 LEEKALRLRS--------NELKLERQLENSQSEISSYKKKISSLEK  427 (643)
Q Consensus       390 LEEk~l~LRS--------~eLKlerele~l~~E~~s~~~qlsslek  427 (643)
                      +++.+..|+-        +.-+|.++|+.+..++..-++++..|++
T Consensus       101 ~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek  146 (194)
T PF15619_consen  101 TKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEK  146 (194)
T ss_pred             HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988754        1234556666666666666666666554

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.35  E-value=3.1  Score=36.70  Aligned_cols=67  Identities=22%  Similarity=0.313  Sum_probs=47.1

Q ss_pred             hHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhC
Q 006482          389 GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG  455 (643)
Q Consensus       389 ~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka~~  455 (643)
                      .||+|+.+.=-----|+-|+++|+.+--++...++.+..-|..|+...+.|++|-..-|.|||...+
T Consensus         8 kLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLG   74 (79)
T COG3074           8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLG   74 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3677766543222224556666666666666667777777778888888999999999999997754

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=89.20  E-value=0.11  Score=60.56  Aligned_cols=127  Identities=20%  Similarity=0.322  Sum_probs=0.0

Q ss_pred             HHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhh
Q 006482          320 LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS  399 (643)
Q Consensus       320 La~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS  399 (643)
                      |..|.+.++-..-.+...+.+|.....+|..++......++.+..|+|+++.+|..       +..||..|...+-.++.
T Consensus       354 L~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~-------~~te~~~Lk~~lee~~e  426 (859)
T PF01576_consen  354 LQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARE-------LETELFKLKNELEELQE  426 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHhhhHHHHH
Confidence            44455555555555555555555555555566666666667777777777766654       45555555555555555


Q ss_pred             hhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006482          400 NELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA  453 (643)
Q Consensus       400 ~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka  453 (643)
                      ..-.++|+...|..||.-+..++....+..++|.-.+..|..|+.-|+..|..+
T Consensus       427 ~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~  480 (859)
T PF01576_consen  427 QLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEA  480 (859)
T ss_dssp             ------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555556666666666666666666655555555555555555555555555444

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

Probab=89.12  E-value=28  Score=35.43  Aligned_cols=130  Identities=18%  Similarity=0.239  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhH--------------------HHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 006482          305 ALQRSLEASRALSESLAAENSSLTDSYNQQRS--------------------VVNQLKSEMEKLQEEIKVQLVELESFRN  364 (643)
Q Consensus       305 aLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~--------------------~v~qLk~~mE~Lq~Ei~aQ~~~le~l~a  364 (643)
                      .|..++..-..=++.+|..+..|.++...+-.                    ....+...++..|..+..+...|+..+.
T Consensus        61 sl~~aw~~~~~e~e~~a~~H~~l~~~L~~~v~~~i~~~~~e~~~k~~~~~~ke~K~~e~~~~kaqk~~~~~~~~l~kaKk  140 (258)
T cd07655          61 TLETAWKGLLSEAERLSELHLSIRDKLLNDVVEEVKTWQKENYHKSMMGGFKETKEAEDGFAKAQKPWAKLLKKVEKAKK  140 (258)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            45555555555666666666666666555422                    2334445555566666666677777777


Q ss_pred             HHHHHhhhhhhHHHHHHHH-------HHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhh----hhH
Q 006482          365 EYANVRLECNAADERAKIL-------ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ----DFQ  433 (643)
Q Consensus       365 ErdaArle~~aA~ERak~L-------AaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~----~l~  433 (643)
                      -|..+=.+...|.......       ..||--++.|+.+....--+.+          ..|..+|..+.+.+.    +|-
T Consensus       141 ~Y~~~cke~e~a~~~~~~~~~d~~~~~~eleK~~~k~~k~~~~~~~~~----------~~Y~~~l~~~n~~~~~y~~~m~  210 (258)
T cd07655         141 AYHAACKAEKSAQKQENNAKSDTSLSPDQVKKLQDKVEKCKQEVSKTK----------DKYEKALEDLNKYNPRYMEDME  210 (258)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCccCCHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhhHHHHHHHH
Confidence            7777655555555544322       2455555555554433333333          445555555554443    466


Q ss_pred             HHHHHHH--HHHH
Q 006482          434 STIEALQ--EEKK  444 (643)
Q Consensus       434 s~i~aLQ--EEKk  444 (643)
                      .+++.||  ||++
T Consensus       211 ~~~~~~Q~lEe~R  223 (258)
T cd07655         211 QVFDKCQEFEEKR  223 (258)
T ss_pred             HHHHHHHHHHHHH
Confidence            7888888  5553

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=89.08  E-value=9.6  Score=45.13  Aligned_cols=78  Identities=22%  Similarity=0.298  Sum_probs=33.7

Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHH
Q 006482          363 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE  442 (643)
Q Consensus       363 ~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEE  442 (643)
                      .+|..+|++.-.--.|-++.|..-|-.-+.-.++.|+..|.   ..+.|-.+.+++++++..+.+++..|+.-++.|.-|
T Consensus       176 naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle---~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e  252 (916)
T KOG0249|consen  176 NAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALE---DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGE  252 (916)
T ss_pred             HHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            33434444333333344444444444333334444444432   122344444555555555555555555555444433


Q ss_pred             H
Q 006482          443 K  443 (643)
Q Consensus       443 K  443 (643)
                      -
T Consensus       253 ~  253 (916)
T KOG0249|consen  253 L  253 (916)
T ss_pred             H
Confidence            3

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=88.96  E-value=21  Score=36.15  Aligned_cols=8  Identities=25%  Similarity=0.036  Sum_probs=4.3

Q ss_pred             hhCCCCCc
Q 006482          453 ASGSGKSI  460 (643)
Q Consensus       453 a~~~gk~~  460 (643)
                      ++..|...
T Consensus       209 AP~~G~V~  216 (334)
T TIGR00998       209 APFDGYVA  216 (334)
T ss_pred             cCCCcEEE
Confidence            35666653

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=88.84  E-value=48  Score=38.38  Aligned_cols=41  Identities=24%  Similarity=0.417  Sum_probs=25.6

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHHHH
Q 006482          533 IHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLEL  584 (643)
Q Consensus       533 I~nInaLisEla~Ere~l~~aL~~es~~~s~Lk~lN~ELsrKLE~qTQRLEL  584 (643)
                      ++-|..+|.-+.-++++|-+.|.+=           ++|.+.+...+.+|++
T Consensus       490 t~RIlEIv~NI~KQk~eI~KIl~DT-----------r~lQkeiN~l~gkL~R  530 (594)
T PF05667_consen  490 TRRILEIVKNIRKQKEEIEKILSDT-----------RELQKEINSLTGKLDR  530 (594)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHh
Confidence            4566667777778888888777653           3344444455555554

>PRK10884 SH3 domain-containing protein; Provisional

Probab=88.83  E-value=5.1  Score=40.26  Aligned_cols=10  Identities=10%  Similarity=0.086  Sum_probs=4.1

Q ss_pred             hHHHHHHHHH
Q 006482          432 FQSTIEALQE  441 (643)
Q Consensus       432 l~s~i~aLQE  441 (643)
                      |...++++|+
T Consensus       158 l~~~~~~~~~  167 (206)
T PRK10884        158 ANLQLDDKQR  167 (206)
T ss_pred             HHHHHHHHHH
Confidence            3334444443

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=88.80  E-value=42  Score=41.50  Aligned_cols=63  Identities=16%  Similarity=0.159  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHH
Q 006482          377 DERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL  439 (643)
Q Consensus       377 ~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aL  439 (643)
                      ..+-..|-+|...|+.++..++-.-+-..+-.+=++...+-+++++..++++-+.||..|+..
T Consensus       172 ~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~k  234 (1109)
T PRK10929        172 QAQLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQ  234 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334456677777777777666544443333333344444445566666666666666666653

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=88.51  E-value=37  Score=36.06  Aligned_cols=34  Identities=12%  Similarity=0.225  Sum_probs=23.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 006482          335 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN  368 (643)
Q Consensus       335 ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErda  368 (643)
                      .....-|.++++++++++.....++..|+.+..-
T Consensus       170 ~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i  203 (444)
T TIGR03017       170 QKAALWFVQQIAALREDLARAQSKLSAYQQEKGI  203 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            3456667777777777777777777777777644

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=88.33  E-value=0.14  Score=58.15  Aligned_cols=18  Identities=44%  Similarity=0.691  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 006482          436 IEALQEEKKMMQSKLRKA  453 (643)
Q Consensus       436 i~aLQEEKklLqskLRka  453 (643)
                      ++-|.||++-|+.||.++
T Consensus       283 ~elLeEe~~sLq~kl~~~  300 (722)
T PF05557_consen  283 VELLEEEKRSLQRKLERL  300 (722)
T ss_dssp             ------------------
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            334445555555555554

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=88.22  E-value=3.4  Score=40.69  Aligned_cols=70  Identities=23%  Similarity=0.395  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHH
Q 006482          304 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL  383 (643)
Q Consensus       304 faLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~L  383 (643)
                      ++++..|.......+.|..||.+|.+.-.+....+.+|+.+++.|+.+       +..+..+|..    .-..++||+.|
T Consensus        86 I~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~-------~~~~~eDY~~----L~~Im~RARkl  154 (161)
T TIGR02894        86 ISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQR-------LSTIEEDYQT----LIDIMDRARKL  154 (161)
T ss_pred             HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH----HHHHHHHHHHH
Confidence            456666777777788899999998876666555666666555555554       5677777776    35689999998


Q ss_pred             H
Q 006482          384 A  384 (643)
Q Consensus       384 A  384 (643)
                      +
T Consensus       155 ~  155 (161)
T TIGR02894       155 A  155 (161)
T ss_pred             H
Confidence            7

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=88.20  E-value=70  Score=38.85  Aligned_cols=12  Identities=33%  Similarity=0.614  Sum_probs=6.1

Q ss_pred             hHHHHHHHHHHH
Q 006482          288 DFAALEQHIEDL  299 (643)
Q Consensus       288 ~faaLqqhIeDL  299 (643)
                      ++..+++.++++
T Consensus       531 ~l~~~~~~~~~~  542 (1047)
T PRK10246        531 RLDALEKEVKKL  542 (1047)
T ss_pred             HHHHHHHHHHHH
Confidence            455555555444

>PRK01156 chromosome segregation protein; Provisional

Probab=88.18  E-value=59  Score=38.03  Aligned_cols=9  Identities=11%  Similarity=-0.057  Sum_probs=4.3

Q ss_pred             HHHHHHHhc
Q 006482          622 VLGWIMKLF  630 (643)
Q Consensus       622 vlgwimklf  630 (643)
                      +-.||+.|.
T Consensus       875 ~~d~ii~~~  883 (895)
T PRK01156        875 VADVAYEVK  883 (895)
T ss_pred             hcCeEEEEE
Confidence            444444444

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=88.14  E-value=40  Score=36.02  Aligned_cols=24  Identities=21%  Similarity=0.310  Sum_probs=13.9

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHH
Q 006482          428 ERQDFQSTIEALQEEKKMMQSKLR  451 (643)
Q Consensus       428 eR~~l~s~i~aLQEEKklLqskLR  451 (643)
                      +...++.-+..++.+...++..|.
T Consensus       228 ~~~~~~~~l~~~~~~l~~~~~~l~  251 (421)
T TIGR03794       228 ELETVEARIKEARYEIEELENKLN  251 (421)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444555556666666666666663

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins

Probab=88.11  E-value=29  Score=34.33  Aligned_cols=133  Identities=16%  Similarity=0.250  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHh------------hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 006482          305 ALQRSLEASRALSESLAAENSSLTDSYNQQ------------RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE  372 (643)
Q Consensus       305 aLqR~L~~s~~l~esLa~ENsaLt~~yNqQ------------~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle  372 (643)
                      ++..+...-..-++.+|..+..+.+.++.+            ......+..++++++.++......++..+.-|..+-.+
T Consensus        62 s~~~aw~~i~~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke  141 (251)
T cd07653          62 SSVKAFRSILNEVNDIAGQHELIAENLNSNVCKELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKE  141 (251)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555666666666666666533            23344456667777777777777777777777777666


Q ss_pred             hhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhh-----hhHHHHHHHH
Q 006482          373 CNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ-----DFQSTIEALQ  440 (643)
Q Consensus       373 ~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~-----~l~s~i~aLQ  440 (643)
                      ...|...-....+.-..=..++.+++...-+...+++.+   ...|...|..+.+...     +|-.+++.||
T Consensus       142 ~~~a~~k~~~~~~~~~~s~~~~eK~~~k~~k~~~~~~~a---~~~Y~~~l~~~N~~~~~~y~~~~p~~~~~~q  211 (251)
T cd07653         142 AEKAKQKYEKADADMNLTKADVEKAKANANLKTQAAEEA---KNEYAAQLQKFNKEQRQHYSTDLPQIFDKLQ  211 (251)
T ss_pred             HHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            666654332222110000011111222222222222222   2456666666655532     6667777777

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=88.07  E-value=22  Score=33.01  Aligned_cols=60  Identities=20%  Similarity=0.278  Sum_probs=30.5

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 006482          285 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE  351 (643)
Q Consensus       285 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E  351 (643)
                      ..++...+=..|-+|-       ...++-.+.-|+|.+.+-.+....=.+...+..|+.+++.++++
T Consensus        29 ~~~~~~~vin~i~~Ll-------~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere   88 (151)
T PF11559_consen   29 SEDNDVRVINCIYDLL-------QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERE   88 (151)
T ss_pred             ccccHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555556665543       33444555555555555555444444444455555555444444

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology

Probab=88.01  E-value=49  Score=36.89  Aligned_cols=29  Identities=34%  Similarity=0.578  Sum_probs=19.2

Q ss_pred             hhHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 006482          287 EDFAALEQHIEDLTQ-EKFALQRSLEASRA  315 (643)
Q Consensus       287 ~~faaLqqhIeDLT~-EKfaLqR~L~~s~~  315 (643)
                      .++..|++-|.+|+. ++-.++++|+.+.+
T Consensus       258 ~~i~~L~~~l~~l~~~~~~~l~~~L~~q~~  287 (582)
T PF09731_consen  258 ERIDALQKELAELKEEEEEELERALEEQRE  287 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666666666655 45577788877764

Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=87.82  E-value=17  Score=33.95  Aligned_cols=87  Identities=18%  Similarity=0.266  Sum_probs=61.3

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHhhhh
Q 006482          284 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ-LVELESF  362 (643)
Q Consensus       284 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ-~~~le~l  362 (643)
                      ..+...+.|+.+|++.....-.|...=+.=+....+|-++|.+++.+.|.-...|..+...|+--..   +. .+...-.
T Consensus        13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~---ak~~l~~r~~   89 (107)
T PF09304_consen   13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQ---AKLELESRLL   89 (107)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            4566889999999998888777766666677788888889988888888888888888777755221   11 2222334


Q ss_pred             HHHHHHHhhhh
Q 006482          363 RNEYANVRLEC  373 (643)
Q Consensus       363 ~aErdaArle~  373 (643)
                      ++|.|.|.++.
T Consensus        90 k~~~dka~lel  100 (107)
T PF09304_consen   90 KAQKDKAILEL  100 (107)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHhhhhHHHH
Confidence            66666665554

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=87.73  E-value=38  Score=38.33  Aligned_cols=82  Identities=26%  Similarity=0.242  Sum_probs=46.6

Q ss_pred             hHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH-
Q 006482          362 FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ-  440 (643)
Q Consensus       362 l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQ-  440 (643)
                      .-+|+..-.-+.-.-.||-+.|-.|  .|+-|+.+|       +.+...++..+-+++.....++-++|.+-..|++|. 
T Consensus       276 ~l~Ee~rrhrEil~k~eReasle~E--nlqmr~qql-------eeentelRs~~arlksl~dklaee~qr~sd~LE~lrl  346 (502)
T KOG0982|consen  276 SLSEEERRHREILIKKEREASLEKE--NLQMRDQQL-------EEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRL  346 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            3344444444555556666655333  344444433       455556666666667777777777776666666654 


Q ss_pred             ------HHHHHHHHHHHh
Q 006482          441 ------EEKKMMQSKLRK  452 (643)
Q Consensus       441 ------EEKklLqskLRk  452 (643)
                            ++++..-.+||+
T Consensus       347 ql~~eq~l~~rm~d~Lrr  364 (502)
T KOG0982|consen  347 QLICEQKLRVRMNDILRR  364 (502)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence                  455555556666

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=87.09  E-value=35  Score=42.60  Aligned_cols=29  Identities=28%  Similarity=0.243  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHhhH
Q 006482          540 ISELALEKEELVQALSSELAQSSKLKDLNN  569 (643)
Q Consensus       540 isEla~Ere~l~~aL~~es~~~s~Lk~lN~  569 (643)
                      |.+=|.|+.. +-+|.-+.....++...|.
T Consensus      1013 l~kkE~EkrK-v~~L~qlr~~l~k~~l~~q 1041 (1317)
T KOG0612|consen 1013 LRKKEKEKRK-VMELSQLRTKLNKLRLKNQ 1041 (1317)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHhhhhH
Confidence            4455566666 7777777777777776665

>TIGR02977 phageshock_pspA phage shock protein A

Probab=86.96  E-value=35  Score=33.99  Aligned_cols=15  Identities=7%  Similarity=0.127  Sum_probs=11.5

Q ss_pred             hHHHHHHHHHHHHHH
Q 006482          288 DFAALEQHIEDLTQE  302 (643)
Q Consensus       288 ~faaLqqhIeDLT~E  302 (643)
                      -..+|.|.|.||-..
T Consensus        25 P~~~l~q~irem~~~   39 (219)
T TIGR02977        25 PEKMIRLIIQEMEDT   39 (219)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            457899999888763

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=86.85  E-value=88  Score=38.77  Aligned_cols=150  Identities=21%  Similarity=0.305  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHhhhh----------HHHHHHHhhh
Q 006482          306 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK---VQLVELESF----------RNEYANVRLE  372 (643)
Q Consensus       306 LqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~---aQ~~~le~l----------~aErdaArle  372 (643)
                      .+-.|+.-..-.+.--.|-+++--+||.+...-+.++..+..|++...   +-...-.+|          +.|+-..-..
T Consensus       326 ~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~  405 (1200)
T KOG0964|consen  326 ALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRG  405 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHH
Confidence            334444444555666677788888999999888888888887777322   222222222          3333344445


Q ss_pred             hhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhh-------hHHHHHHHHHHhhhHHHhh-------hhhHHHHHH
Q 006482          373 CNAADERAKILASEVIGLEEKALRLRSNELKLERQLEN-------SQSEISSYKKKISSLEKER-------QDFQSTIEA  438 (643)
Q Consensus       373 ~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~-------l~~E~~s~~~qlsslekeR-------~~l~s~i~a  438 (643)
                      .+.-.|+-..|..|.-.||...-..=..-=+++..+..       +..+.-..++++..+.-.|       ..|++.|++
T Consensus       406 i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~  485 (1200)
T KOG0964|consen  406 INDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIAN  485 (1200)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666666666666666554333221111122222222       2222223333333333333       346788888


Q ss_pred             HHHHHHHHHHHHHhhhC
Q 006482          439 LQEEKKMMQSKLRKASG  455 (643)
Q Consensus       439 LQEEKklLqskLRka~~  455 (643)
                      +.+.-..-+..||.+..
T Consensus       486 ~~~dl~~~~~~L~~~~~  502 (1200)
T KOG0964|consen  486 LEEDLSRAEKNLRATMN  502 (1200)
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            88888888888888755

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=86.84  E-value=69  Score=39.66  Aligned_cols=21  Identities=19%  Similarity=0.378  Sum_probs=8.1

Q ss_pred             HHHHHhhhHHHhhhhhHHHHH
Q 006482          417 SYKKKISSLEKERQDFQSTIE  437 (643)
Q Consensus       417 s~~~qlsslekeR~~l~s~i~  437 (643)
                      .+++-+.-+++|+.+|+.-|.
T Consensus       534 eLe~~l~~lE~ENa~LlkqI~  554 (1195)
T KOG4643|consen  534 ELEELLGNLEEENAHLLKQIQ  554 (1195)
T ss_pred             HHHHHHhhHHHHHHHHHHHHH
Confidence            333333333444444433333

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=86.79  E-value=18  Score=42.49  Aligned_cols=60  Identities=22%  Similarity=0.230  Sum_probs=28.0

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHH
Q 006482          284 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ  349 (643)
Q Consensus       284 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq  349 (643)
                      ...+-+..|-|.++-|.+|=      +.++...-+.+..--..|...+.+|-..+.+++++++.|+
T Consensus       533 ~~~E~l~lL~~a~~vlreeY------i~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~  592 (717)
T PF10168_consen  533 SPQECLELLSQATKVLREEY------IEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLR  592 (717)
T ss_pred             CCHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566666655555431      1122222233333334445555555555555555555544

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=86.77  E-value=49  Score=35.56  Aligned_cols=94  Identities=20%  Similarity=0.349  Sum_probs=73.0

Q ss_pred             hhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHH
Q 006482          360 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL  439 (643)
Q Consensus       360 e~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aL  439 (643)
                      ..+.+|.+.-+-.+.+-.++...||-|.-..=+++.++...-=++++++.+++.++-.+.+++..+..+.-.++.-|.-+
T Consensus       161 ~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~  240 (294)
T COG1340         161 KELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELREL  240 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            34457777888888888888888888888888888888777777788888888888888888888887777777777777


Q ss_pred             HHHHHHHHHHHHhh
Q 006482          440 QEEKKMMQSKLRKA  453 (643)
Q Consensus       440 QEEKklLqskLRka  453 (643)
                      +..-+.|..+.++.
T Consensus       241 ~k~ik~l~~~~~~~  254 (294)
T COG1340         241 EKKIKALRAKEKAA  254 (294)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66666666655544

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=86.63  E-value=79  Score=37.77  Aligned_cols=63  Identities=29%  Similarity=0.343  Sum_probs=39.9

Q ss_pred             hHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 006482          389 GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  451 (643)
Q Consensus       389 ~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLR  451 (643)
                      -||.+|-.||.+.=--.+-++++..+-.-+++|+.+-.|-=.-+.--|+.||+|-.-++.+.-
T Consensus       591 ~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~e  653 (786)
T PF05483_consen  591 ILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHE  653 (786)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            455555555554333344455567777777777776666666677778888888766665443

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.63  E-value=50  Score=39.95  Aligned_cols=29  Identities=17%  Similarity=0.391  Sum_probs=15.5

Q ss_pred             HhhhhhhhHHHHhhhHHHHHHHHHHhhhH
Q 006482          397 LRSNELKLERQLENSQSEISSYKKKISSL  425 (643)
Q Consensus       397 LRS~eLKlerele~l~~E~~s~~~qlssl  425 (643)
                      +|-....++||.+.-..+|..++-|++.|
T Consensus       547 ikdqldelskE~esk~~eidi~n~qlkel  575 (1118)
T KOG1029|consen  547 IKDQLDELSKETESKLNEIDIFNNQLKEL  575 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            33333444555555555666666666654

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=86.60  E-value=29  Score=39.35  Aligned_cols=42  Identities=19%  Similarity=0.247  Sum_probs=21.5

Q ss_pred             CCCCCcccccCCCcccccCCccccccccCCCCCCCCC---ccccCCccc
Q 006482          158 NSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGT---LFEQTEPER  203 (643)
Q Consensus       158 ~Ssnh~P~~S~~~et~~~rSRpSFLDSlnV~Ra~~~t---~~~~tEp~k  203 (643)
                      ..+|--+|.+.-+++-    +-=|.|.+.|++...|+   +.-.+|...
T Consensus       133 ~efNGk~Fn~le~e~C----hll~V~~ve~~~s~d~as~~~~~~tELPT  177 (493)
T KOG0804|consen  133 EEFNGKQFNSLEPEVC----HLLYVDRVEVTESEDGASEPPTGLTELPT  177 (493)
T ss_pred             HHcCCCcCCCCCccce----eEEEEEEEEEEecccCCCCCCCCcccCCC
Confidence            3455566666665532    33456666666554433   333445444

>PRK10361 DNA recombination protein RmuC; Provisional

Probab=86.47  E-value=65  Score=36.63  Aligned_cols=55  Identities=16%  Similarity=0.259  Sum_probs=34.7

Q ss_pred             hHHHHhhhHHHHHHHH----HHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh-hCCCC
Q 006482          404 LERQLENSQSEISSYK----KKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA-SGSGK  458 (643)
Q Consensus       404 lerele~l~~E~~s~~----~qlsslekeR~~l~s~i~aLQEEKklLqskLRka-~~~gk  458 (643)
                      ++.+|+..+..+....    +.-.+|..+=..|......|..|-.-|...|+.- -..|.
T Consensus       145 l~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~  204 (475)
T PRK10361        145 LREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGN  204 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcc
Confidence            4666666666666544    3345676676777777777777777777777653 23454

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=86.44  E-value=41  Score=39.44  Aligned_cols=85  Identities=15%  Similarity=0.205  Sum_probs=65.8

Q ss_pred             hhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 006482          371 LECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL  450 (643)
Q Consensus       371 le~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskL  450 (643)
                      ..|....++-+.|-.++..|+.++..++-++.++.++++....++.-.   +..|+..+..+.... +-+++.|.|+-.+
T Consensus       234 ~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~L~~~~~~l~~~~-~e~~~r~kL~N~i  309 (670)
T KOG0239|consen  234 GLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTL---QSDLESLEENLVEKK-KEKEERRKLHNEI  309 (670)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            344555666788888999999999999999999999988887665555   444555566666666 6678889999999


Q ss_pred             HhhhCCCCC
Q 006482          451 RKASGSGKS  459 (643)
Q Consensus       451 Rka~~~gk~  459 (643)
                      ...-++-++
T Consensus       310 ~eLkGnIRV  318 (670)
T KOG0239|consen  310 LELKGNIRV  318 (670)
T ss_pred             HHhhcCceE
Confidence            988888886

>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins

Probab=86.32  E-value=36  Score=33.63  Aligned_cols=127  Identities=16%  Similarity=0.229  Sum_probs=64.0

Q ss_pred             hhHHHHHHHHH----------HHHHHHHHHHHHHHHH-HHHHHHHHH-------hhhHHHHHHHHhhHHHHHHHHHHHHH
Q 006482          287 EDFAALEQHIE----------DLTQEKFALQRSLEAS-RALSESLAA-------ENSSLTDSYNQQRSVVNQLKSEMEKL  348 (643)
Q Consensus       287 ~~faaLqqhIe----------DLT~EKfaLqR~L~~s-~~l~esLa~-------ENsaLt~~yNqQ~~~v~qLk~~mE~L  348 (643)
                      |.|..|.+|++          ++=.|+-.+.+.-++. ++|+.....       ...++..-|+.--..+..+-..-+++
T Consensus         5 d~~~~l~~~~~~g~~~~~~l~~f~keRa~iE~eYak~L~kLa~k~~~~~~~~~~~~~s~~~aw~~i~~e~~~~a~~H~~~   84 (251)
T cd07653           5 DQFDNLEKHTQKGIDFLERYGKFVKERAAIEQEYAKKLRKLVKKYLPKKKEEDEYSFSSVKAFRSILNEVNDIAGQHELI   84 (251)
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555544          3445565555554443 233433221       12245566666655555555555555


Q ss_pred             HHHHHHHH-HHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHH
Q 006482          349 QEEIKVQL-VELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS  416 (643)
Q Consensus       349 q~Ei~aQ~-~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~  416 (643)
                      -+.|..+. -.+..+..+....+-.+   .+=...+-.++..+..++.+.|..--++.++++.+.....
T Consensus        85 a~~l~~~v~~~l~~~~~~~~~~rK~~---~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~  150 (251)
T cd07653          85 AENLNSNVCKELKTLISELRQERKKH---LSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYE  150 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55554443 34444554444433333   3333345556666666666666666666666665554433

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=86.21  E-value=91  Score=38.12  Aligned_cols=25  Identities=28%  Similarity=0.299  Sum_probs=15.1

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHH
Q 006482          533 IHNINALISELALEKEELVQALSSE  557 (643)
Q Consensus       533 I~nInaLisEla~Ere~l~~aL~~e  557 (643)
                      -|+|++|.-.+..+--..+-.|.++
T Consensus       684 ~d~v~~l~k~~~~~a~~~~~~l~~~  708 (980)
T KOG0980|consen  684 SDRVNDLCKKCGREALAFLVSLSSE  708 (980)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4566777766666655555555544

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=86.14  E-value=23  Score=35.07  Aligned_cols=55  Identities=25%  Similarity=0.329  Sum_probs=37.2

Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHH
Q 006482          363 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKK  420 (643)
Q Consensus       363 ~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~  420 (643)
                      +.|..+...-+..--.|-..|=.|||.|=-.+..+|+..   ++.|..++.|+-+|-+
T Consensus       126 ~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr~~T---erdL~~~r~e~~r~~r  180 (182)
T PF15035_consen  126 REEEENFNQYLSSEHSRLLSLWREVVALRRQFAELRTAT---ERDLSDMRAEFARTSR  180 (182)
T ss_pred             HHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHc
Confidence            334444333334444455555699999999999888876   5788888888777654

>PRK10884 SH3 domain-containing protein; Provisional

Probab=86.10  E-value=7.9  Score=38.93  Aligned_cols=77  Identities=18%  Similarity=0.295  Sum_probs=50.0

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006482          282 STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES  361 (643)
Q Consensus       282 s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~  361 (643)
                      .+.-.+.+.+||+-|++|+.+--.+          -+++..+...+.+++++....+++|+.+-.+|+++++....+++.
T Consensus        88 ~p~~~~rlp~le~el~~l~~~l~~~----------~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~  157 (206)
T PRK10884         88 TPSLRTRVPDLENQVKTLTDKLNNI----------DNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA  157 (206)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHH----------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455677888888888887443322          233445555566666666777777888888887777666666666


Q ss_pred             hHHHHHH
Q 006482          362 FRNEYAN  368 (643)
Q Consensus       362 l~aErda  368 (643)
                      +.+|.+.
T Consensus       158 l~~~~~~  164 (206)
T PRK10884        158 ANLQLDD  164 (206)
T ss_pred             HHHHHHH
Confidence            6555554

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=86.00  E-value=23  Score=40.48  Aligned_cols=54  Identities=31%  Similarity=0.260  Sum_probs=42.3

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHH-------HHHHhhhHHHHH
Q 006482          532 MIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSR-------KLEHQTQRLELL  585 (643)
Q Consensus       532 mI~nInaLisEla~Ere~l~~aL~~es~~~s~Lk~lN~ELsr-------KLE~qTQRLELl  585 (643)
                      -|++.+++|+||-.+-+-+-..|...-+.|-.+|+.|-++-+       |||-.-+.|-|+
T Consensus       488 ~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~lnL~  548 (622)
T COG5185         488 DIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLNLL  548 (622)
T ss_pred             HhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            368889999999999999989999999999999999887654       445444444443

>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like

Probab=85.78  E-value=34  Score=35.67  Aligned_cols=137  Identities=12%  Similarity=0.166  Sum_probs=76.2

Q ss_pred             HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHH
Q 006482          316 LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKAL  395 (643)
Q Consensus       316 l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l  395 (643)
                      |+-+++.+-..+...|..++   ...-.+-..++.++..+...|+..+..|+.|-.+...|..+-...-++.-.=...+.
T Consensus        89 l~~~v~~~l~~~~~~l~~~r---k~~~~~~~klqk~l~~~~~~leksKk~Y~~acke~E~A~~k~~ka~~d~~~tk~~~e  165 (252)
T cd07675          89 MGHRVYGELMRYSHDLKGER---KMHLQEGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERLDNDTNATKSDVE  165 (252)
T ss_pred             HHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccCHHHHH
Confidence            33334444444454444432   222255678888999999999999999999988888887774432222111111112


Q ss_pred             HHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhh-----hhhHHHHHHHH--HHHHH--HHHHHHhhhCCCC
Q 006482          396 RLRSNELKLERQLENSQSEISSYKKKISSLEKER-----QDFQSTIEALQ--EEKKM--MQSKLRKASGSGK  458 (643)
Q Consensus       396 ~LRS~eLKlerele~l~~E~~s~~~qlsslekeR-----~~l~s~i~aLQ--EEKkl--LqskLRka~~~gk  458 (643)
                      ++|..-=+-...++..   ...|..+|..+-+.-     .+|-.+++.||  ||+|.  |..-+..++.-|+
T Consensus       166 K~k~~~~~~~q~~e~a---Kn~Y~~~L~~~N~~q~k~Y~e~mP~vfd~lQ~leE~Ri~~l~e~~~~~~~~E~  234 (252)
T cd07675         166 KAKQQLNLRTHMADES---KNEYAAQLQNFNGEQHKHFYIVIPQIYKQLQEMDERRTVKLSECYRGFADSER  234 (252)
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222222212223322   246777777765543     34888999999  56643  3444444444333

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=85.57  E-value=4.9  Score=46.12  Aligned_cols=29  Identities=34%  Similarity=0.377  Sum_probs=23.1

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhhhCC
Q 006482          428 ERQDFQSTIEALQEEKKMMQSKLRKASGS  456 (643)
Q Consensus       428 eR~~l~s~i~aLQEEKklLqskLRka~~~  456 (643)
                      ...--+.++++||.|-..|..+|+..-.+
T Consensus       560 ~~~~k~~~l~~L~~En~~L~~~l~~le~~  588 (722)
T PF05557_consen  560 AEQIKKSTLEALQAENEDLLARLRSLEEG  588 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            33445689999999999999999887554

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants

Probab=85.48  E-value=24  Score=39.92  Aligned_cols=109  Identities=24%  Similarity=0.315  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHH-HHHHH
Q 006482          304 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAAD-ERAKI  382 (643)
Q Consensus       304 faLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~-ERak~  382 (643)
                      .+|+|++..--++.|+-|+    |-++||+....-....+-++....                +||+....-|. -=++.
T Consensus       330 ~al~~A~~GhaR~lEqYad----LqEk~~~Ll~~Hr~i~egI~dVKk----------------aAakAg~kG~~~rF~~s  389 (488)
T PF06548_consen  330 DALQRAMEGHARMLEQYAD----LQEKHNDLLARHRRIMEGIEDVKK----------------AAAKAGVKGAESRFINS  389 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHhccccchHHHHHH
Confidence            6899999999999999885    788999887766666655543333                34444433343 33789


Q ss_pred             HHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006482          383 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA  453 (643)
Q Consensus       383 LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka  453 (643)
                      ||+|+-.|-..  +        |||.+-++.|-+.++.|+.          +|.+|.|-=-. |..|||.|
T Consensus       390 laaEiSalr~e--r--------EkEr~~l~~eNk~L~~QLr----------DTAEAVqAagE-llvrl~ea  439 (488)
T PF06548_consen  390 LAAEISALRAE--R--------EKERRFLKDENKGLQIQLR----------DTAEAVQAAGE-LLVRLREA  439 (488)
T ss_pred             HHHHHHHHHHH--H--------HHHHHHHHHHhHHHHHHHH----------hHHHHHHHHHH-HHHHHHhH
Confidence            99998655221  1        3333345666666655554          56666653322 34556554

Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=85.32  E-value=10  Score=44.11  Aligned_cols=43  Identities=23%  Similarity=0.312  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHH
Q 006482          337 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADER  379 (643)
Q Consensus       337 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ER  379 (643)
                      .+..+...+|+|+.|+..-...++.++.|.-..+.+|..+..+
T Consensus       423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~  465 (652)
T COG2433         423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRRE  465 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555554445555544444444444444433

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=85.11  E-value=12  Score=33.31  Aligned_cols=72  Identities=24%  Similarity=0.282  Sum_probs=60.0

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006482          284 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL  359 (643)
Q Consensus       284 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l  359 (643)
                      .+-.++..||+-|--|+.||-.--.-.-.+++-.+.|-.||-.|....+.+...+.+|++    ++.++..++..+
T Consensus        21 ~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~----~E~~~~~~l~~~   92 (96)
T PF08647_consen   21 KKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE----TEKEFVRKLKNL   92 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHh
Confidence            455789999999999999998887777888888999999999999999999999999988    555555554443

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=84.93  E-value=39  Score=32.66  Aligned_cols=52  Identities=27%  Similarity=0.380  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHH
Q 006482          336 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEV  387 (643)
Q Consensus       336 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEV  387 (643)
                      .++.-|+.+++.+-.++..=...|.+++.|+++.-..|..=.+|...|.+=+
T Consensus        52 ~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~  103 (140)
T PF10473_consen   52 AEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLN  103 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3445555555555555555555555555555555555555444444443333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=84.88  E-value=48  Score=33.75  Aligned_cols=23  Identities=17%  Similarity=0.316  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHh
Q 006482          348 LQEEIKVQLVELESFRNEYANVR  370 (643)
Q Consensus       348 Lq~Ei~aQ~~~le~l~aErdaAr  370 (643)
                      ++.++......++..+++++.|+
T Consensus        95 ~~~~~~~~~~~~~~~~~~l~~a~  117 (327)
T TIGR02971        95 LFKDVAAQQATLNRLEAELETAQ  117 (327)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHH
Confidence            33333333333334444444333

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>TIGR02473 flagell_FliJ flagellar export protein FliJ

Probab=84.87  E-value=28  Score=31.07  Aligned_cols=32  Identities=16%  Similarity=0.282  Sum_probs=14.4

Q ss_pred             HHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHH
Q 006482          406 RQLENSQSEISSYKKKISSLEKERQDFQSTIE  437 (643)
Q Consensus       406 rele~l~~E~~s~~~qlsslekeR~~l~s~i~  437 (643)
                      ..+..+..++..++..+..+.+++..|..+.+
T Consensus        82 ~~l~~~~~~~e~~r~~l~~a~~~~k~lekL~e  113 (141)
T TIGR02473        82 QELALLQQEVEAKRERLLEARRELKALEKLKE  113 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444433

Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=84.83  E-value=63  Score=39.90  Aligned_cols=88  Identities=23%  Similarity=0.295  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 006482          294 QHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC  373 (643)
Q Consensus       294 qhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~  373 (643)
                      -.|.|++.|=--|-|.|.++|+=.==.-.     -++|=+.-...++...++++|+++|++-...+..+.+=|..-...+
T Consensus       404 ~llKd~~~EIerLK~dl~AaReKnGvyis-----ee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~  478 (1041)
T KOG0243|consen  404 TLLKDLYEEIERLKRDLAAAREKNGVYIS-----EERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIK  478 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhCceEec-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            56889999998999999988873221111     1344444444555555555555555555555566655555444444


Q ss_pred             hhHHHHHHHHHHH
Q 006482          374 NAADERAKILASE  386 (643)
Q Consensus       374 ~aA~ERak~LAaE  386 (643)
                      ..-.++-..|-..
T Consensus       479 ~~l~~~~~~~k~~  491 (1041)
T KOG0243|consen  479 ELLKEEKEKLKSK  491 (1041)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444444333

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=84.67  E-value=13  Score=38.25  Aligned_cols=61  Identities=31%  Similarity=0.481  Sum_probs=47.1

Q ss_pred             HHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 006482          390 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL  450 (643)
Q Consensus       390 LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskL  450 (643)
                      |||+...+.-+--|++.+++....+.+..++++.++.|.=.+++...|.|-||--.||.++
T Consensus       149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i  209 (216)
T KOG1962|consen  149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI  209 (216)
T ss_pred             hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            6666666666666777777777777888888888888888888888888888877777654

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=84.64  E-value=80  Score=36.08  Aligned_cols=37  Identities=30%  Similarity=0.304  Sum_probs=16.8

Q ss_pred             HHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 006482          413 SEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL  450 (643)
Q Consensus       413 ~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskL  450 (643)
                      .-+.++.+++.... ..+.-+.+.+.|.+-.+.|...+
T Consensus       300 ~ll~~~~~q~~~e~-~~~~~~~~~~~l~~~~~~i~~~~  336 (650)
T TIGR03185       300 NLLDSTKAQLQKEE-QSQQNQLTQEELEERDKELLESL  336 (650)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455555555432 23344444455544444444433

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2

Probab=84.60  E-value=50  Score=33.73  Aligned_cols=106  Identities=13%  Similarity=0.179  Sum_probs=65.3

Q ss_pred             HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHH-----HHHHHHH
Q 006482          314 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK-----ILASEVI  388 (643)
Q Consensus       314 ~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak-----~LAaEVV  388 (643)
                      ..++++|..+-..+..=.+.|......++..++.++.....|.-.++.-+..|..+-.+...|..+..     ....|+=
T Consensus        78 ~~la~~L~~~~~~~~~f~~~qk~~rKk~e~~~ek~~K~~~~~~k~~~ksKk~Ye~~Cke~~~a~~~~~~~~~~~~~ke~~  157 (240)
T cd07672          78 IQLAQTLRDEAKKMEDFRERQKLARKKIELIMDAIHKQRAMQFKKTMESKKNYEQKCRDKDEAEQAVNRNANLVNVKQQE  157 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHH
Confidence            34666666665545555577777888889999999998888888888888777765555444443321     1123454


Q ss_pred             hHHHHHHHHhhhhhhhHHHHhhhHHHHHHHH
Q 006482          389 GLEEKALRLRSNELKLERQLENSQSEISSYK  419 (643)
Q Consensus       389 ~LEEk~l~LRS~eLKlerele~l~~E~~s~~  419 (643)
                      -|++|+.+.+.+.-|.+++.+....++..++
T Consensus       158 K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~~  188 (240)
T cd07672         158 KLFAKLAQSKQNAEDADRLYMQNISVLDKIR  188 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5556665555555555554444444444333

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=84.27  E-value=14  Score=31.56  Aligned_cols=52  Identities=23%  Similarity=0.226  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 006482          305 ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQL  356 (643)
Q Consensus       305 aLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~  356 (643)
                      .+.|-++........|..|++....+-=.-......|+.+++.|+.|++.++
T Consensus        16 ~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r   67 (69)
T PF14197_consen   16 SLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR   67 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4455677777788888888888887777777788888888888888865543

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=84.25  E-value=81  Score=35.80  Aligned_cols=169  Identities=17%  Similarity=0.247  Sum_probs=114.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 006482          285 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN  364 (643)
Q Consensus       285 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~a  364 (643)
                      =..++..+++.|+++..-=-.|  .|..+.+..+.+.++-+.|-+.+=.....-..++..+..+..-|....-....+..
T Consensus       250 i~~~i~~i~~~l~~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~  327 (560)
T PF06160_consen  250 IEEEIEQIEEQLEEALALLKNL--ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKE  327 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            3455666665555543321111  45667777777777777777777666666667777777777777777778888899


Q ss_pred             HHHHHhhhhhhH---HHHHHHHHHHHHhHHHHHHHHhh--------------hhhhhHHHHhhhHHHHHHHHHHhhhHHH
Q 006482          365 EYANVRLECNAA---DERAKILASEVIGLEEKALRLRS--------------NELKLERQLENSQSEISSYKKKISSLEK  427 (643)
Q Consensus       365 ErdaArle~~aA---~ERak~LAaEVV~LEEk~l~LRS--------------~eLKlerele~l~~E~~s~~~qlsslek  427 (643)
                      |.++.++.+.=.   .++.+.+..++-.|+.+...+.-              .--++.++|+.+..+...+...+..|.+
T Consensus       328 e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~  407 (560)
T PF06160_consen  328 ELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRK  407 (560)
T ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998887533   46788888888888887765532              2233455666666666666667777777


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhhhC
Q 006482          428 ERQDFQSTIEALQEEKKMMQSKLRKASG  455 (643)
Q Consensus       428 eR~~l~s~i~aLQEEKklLqskLRka~~  455 (643)
                      +=...+..+..++.+-...+.+|.+...
T Consensus       408 dE~~Ar~~l~~~~~~l~~ikR~lek~nL  435 (560)
T PF06160_consen  408 DEKEAREKLQKLKQKLREIKRRLEKSNL  435 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            6666666777776666666666666655

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF13166 AAA_13: AAA domain

Probab=84.01  E-value=81  Score=35.65  Aligned_cols=19  Identities=21%  Similarity=0.151  Sum_probs=10.1

Q ss_pred             CcccchHHHHHHHHHHHhc
Q 006482          612 ADEGDEVVERVLGWIMKLF  630 (643)
Q Consensus       612 ~degdevvervlgwimklf  630 (643)
                      .|-++..++.++.-+-++|
T Consensus       693 ~~~~~~~~~e~~~~~~~if  711 (712)
T PF13166_consen  693 IDMNPIDIEEYKKVFRKIF  711 (712)
T ss_pred             cCCChhhHHHHHHHHHHHh
Confidence            3444555556555555544

>TIGR02231 conserved hypothetical protein

Probab=83.73  E-value=8.2  Score=42.50  Aligned_cols=45  Identities=16%  Similarity=0.148  Sum_probs=26.5

Q ss_pred             hHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhC
Q 006482          411 SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG  455 (643)
Q Consensus       411 l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka~~  455 (643)
                      +..-...|..++..+..++.++...+..++++...|+.+|.++..
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~  173 (525)
T TIGR02231       129 WFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT  173 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            333344445555555555555666666667777777777766654

This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=83.38  E-value=83  Score=35.26  Aligned_cols=99  Identities=21%  Similarity=0.238  Sum_probs=56.4

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHhhHHHHHHHHHhhhHHHHHHHHHHhh----hccc-------c
Q 006482          531 RMIHNINALISELALEKEELVQALSSEL--AQSSKLKDLNNELSRKLEHQTQRLELLTAQNMAN----ENIS-------F  597 (643)
Q Consensus       531 RmI~nInaLisEla~Ere~l~~aL~~es--~~~s~Lk~lN~ELsrKLE~qTQRLELltsq~m~~----e~~~-------a  597 (643)
                      +....++.=+.+-+.|+..++.+|+...  +.-.++..+-..|+..|=.-+..||.+++.+-+-    |.+.       +
T Consensus       355 ~~~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~~~~~  434 (511)
T PF09787_consen  355 RQKSPLQLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLKEEAS  434 (511)
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHhhcc
Confidence            3444455556667788888888888765  2234455555555544444456677777655442    1111       1


Q ss_pred             CCCCccccccccccCcccchHHHHHHHHHHHhcCCC
Q 006482          598 RQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGG  633 (643)
Q Consensus       598 ~~~d~~~~~~~~~~~degdevvervlgwimklfpgg  633 (643)
                      ....++   -...|.+.+|.+-.| +-+.|+..|+.
T Consensus       435 ~~~~~~---~~~~~~~~~~d~~~r-~~~~~~~~~~d  466 (511)
T PF09787_consen  435 NNRPSS---ILMKYSNSEDDAESR-VPLLMKDSPHD  466 (511)
T ss_pred             CCCCch---hhHhhccCCCchhhh-hhhhccCCCcc
Confidence            122222   234566667777777 67777777665

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal

Probab=83.24  E-value=9.1  Score=34.85  Aligned_cols=81  Identities=22%  Similarity=0.337  Sum_probs=52.3

Q ss_pred             chhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006482          285 HNEDFAALEQHIEDLTQEKFA-----------LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK  353 (643)
Q Consensus       285 ~~~~faaLqqhIeDLT~EKfa-----------LqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~  353 (643)
                      ..-||++||.||..+|-=++.           +.+-+.=+|=..|-|-.-.+.|.+........+.++..+.++|+..++
T Consensus        25 ~~~Di~~Lq~~i~~vtf~~l~~e~~~~~~dp~~~klfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~  104 (118)
T PF13815_consen   25 RELDIDTLQENIENVTFCDLENEDCQHFVDPNFLKLFRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLK  104 (118)
T ss_pred             hccCHHHHHHHHHhcceeccChhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356899999999977643321           233444455556666666666666666666666667777777777766


Q ss_pred             HHHHHhhhhHHH
Q 006482          354 VQLVELESFRNE  365 (643)
Q Consensus       354 aQ~~~le~l~aE  365 (643)
                      .+..++..++.|
T Consensus       105 ~~~~~~k~lk~E  116 (118)
T PF13815_consen  105 KQKEEIKKLKKE  116 (118)
T ss_pred             HHHHHHHHHHHh
Confidence            666666666655

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=82.95  E-value=87  Score=35.22  Aligned_cols=25  Identities=28%  Similarity=0.486  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006482          289 FAALEQHIEDLTQEKFALQRSLEAS  313 (643)
Q Consensus       289 faaLqqhIeDLT~EKfaLqR~L~~s  313 (643)
                      ++.+++-|.+--++.-.|+..|...
T Consensus        47 i~~~~~~i~~~~~~~~kL~~~lk~~   71 (420)
T COG4942          47 IAALEKKIREQQDQRAKLEKQLKSL   71 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333343333333

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=82.90  E-value=47  Score=32.10  Aligned_cols=33  Identities=30%  Similarity=0.309  Sum_probs=14.8

Q ss_pred             HHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHH
Q 006482          386 EVIGLEEKALRLRSNELKLERQLENSQSEISSYKKK  421 (643)
Q Consensus       386 EVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~q  421 (643)
                      |...+|.|+..+   .-|+..++.+++.+|++.+-.
T Consensus       121 e~~~~~~ki~e~---~~ki~~ei~~lr~~iE~~K~~  153 (177)
T PF07798_consen  121 EQAKQELKIQEL---NNKIDTEIANLRTEIESLKWD  153 (177)
T ss_pred             HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            333444444333   234445555555555544433

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=82.88  E-value=1.1e+02  Score=36.43  Aligned_cols=99  Identities=19%  Similarity=0.286  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHH-------HHHHHHhhhhhhhHHHHhhhHH
Q 006482          341 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLE-------EKALRLRSNELKLERQLENSQS  413 (643)
Q Consensus       341 Lk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LE-------Ek~l~LRS~eLKlerele~l~~  413 (643)
                      .+.+.+||...........+.+..||...|-+.-++-.|=..|-.+--.||       .+|--||++-+    |.|+++.
T Consensus        53 ~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQv----efE~~Kh  128 (717)
T PF09730_consen   53 VQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQV----EFEGLKH  128 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHH----HHHHHHH
Confidence            333344444444444444444445555555555555555555555555554       45566666655    3445555


Q ss_pred             HHHHH-------HHHhhhHHHhh----hhhHHHHHHHHHHH
Q 006482          414 EISSY-------KKKISSLEKER----QDFQSTIEALQEEK  443 (643)
Q Consensus       414 E~~s~-------~~qlsslekeR----~~l~s~i~aLQEEK  443 (643)
                      ||+++       +.|++.+.+=|    ..|...+++||.|+
T Consensus       129 ei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~ER  169 (717)
T PF09730_consen  129 EIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSER  169 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55554       55666554433    24777888999776

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=82.85  E-value=1.2e+02  Score=36.55  Aligned_cols=167  Identities=19%  Similarity=0.268  Sum_probs=89.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH---Hhh-----hHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006482          286 NEDFAALEQHIEDLTQEKFALQRSLEA----SRALSESLA---AEN-----SSLTDSYNQQRSVVNQLKSEMEKLQEEIK  353 (643)
Q Consensus       286 ~~~faaLqqhIeDLT~EKfaLqR~L~~----s~~l~esLa---~EN-----saLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~  353 (643)
                      ..+.++|.+++|+.|+.|.++..-+..    -++-+++|-   .|.     ++++..-.+.-..-.+|..++..+..+++
T Consensus        23 e~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~  102 (769)
T PF05911_consen   23 EAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLA  102 (769)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999988764321    233344332   222     23333333333333355555555555444


Q ss_pred             HHHHHhhhhH---HHHHHHhhhhhhHHHHH----HHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHH
Q 006482          354 VQLVELESFR---NEYANVRLECNAADERA----KILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLE  426 (643)
Q Consensus       354 aQ~~~le~l~---aErdaArle~~aA~ERa----k~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlssle  426 (643)
                      .-.++..++.   .|+++...+......+|    ..|-.-+-.+|-.+.-||-+-+-+.+||+=-..|+.=.++.+.++.
T Consensus       103 ~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~  182 (769)
T PF05911_consen  103 ESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAAS  182 (769)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            4333333332   13333322222222221    1222223334444455555666666776665556555566666554


Q ss_pred             HhhhhhHH--HHHHHHHHHHHHHHHHHhhh
Q 006482          427 KERQDFQS--TIEALQEEKKMMQSKLRKAS  454 (643)
Q Consensus       427 keR~~l~s--~i~aLQEEKklLqskLRka~  454 (643)
                        +|||.+  -|-.|..|=..|..-+||..
T Consensus       183 --kqhle~vkkiakLEaEC~rLr~l~rk~l  210 (769)
T PF05911_consen  183 --KQHLESVKKIAKLEAECQRLRALVRKKL  210 (769)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence              455555  47788899999999999864

The function of this family is unknown.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=82.82  E-value=95  Score=35.53  Aligned_cols=55  Identities=15%  Similarity=0.156  Sum_probs=30.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHH
Q 006482          285 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVN  339 (643)
Q Consensus       285 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~  339 (643)
                      ...++..|++-|+++..+.-.+...++..+.-.+.+..+-..+.+.|...|+..-
T Consensus       207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~  261 (650)
T TIGR03185       207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLF  261 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence            3345555555555555555555555555555555555555566666665555433

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=82.58  E-value=75  Score=37.73  Aligned_cols=48  Identities=23%  Similarity=0.307  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 006482          304 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE  351 (643)
Q Consensus       304 faLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E  351 (643)
                      |.|++...++....-.|-.|-+.|.+.-=+-+..+..+.-.+-+|+.+
T Consensus       485 fklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq  532 (698)
T KOG0978|consen  485 FKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQ  532 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666665555555555444444444444444444443

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.55  E-value=94  Score=36.50  Aligned_cols=132  Identities=20%  Similarity=0.311  Sum_probs=81.3

Q ss_pred             HHHHHHHHhhhHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHH-------
Q 006482          315 ALSESLAAENSSLTDSYNQQRSVV-NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE-------  386 (643)
Q Consensus       315 ~l~esLa~ENsaLt~~yNqQ~~~v-~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaE-------  386 (643)
                      +--+-|-+--+-+-++|=...+.| .++++-+.+|+..++.|+-.+.-...||.-       ..|||-.||.-       
T Consensus       559 E~~~lL~~a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~-------i~e~a~~La~R~eea~e~  631 (741)
T KOG4460|consen  559 ECLQLLSRATQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKS-------LREMAERLADRYEEAKEK  631 (741)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Confidence            333444555555666776666555 578889999999999999988888888765       34444444432       


Q ss_pred             HHhHHHHHHHHhhh-----------hhhhHHHHhhhHHHHHHHHHHhhhH----HHhhhhhHHHHHHHH--------HHH
Q 006482          387 VIGLEEKALRLRSN-----------ELKLERQLENSQSEISSYKKKISSL----EKERQDFQSTIEALQ--------EEK  443 (643)
Q Consensus       387 VV~LEEk~l~LRS~-----------eLKlerele~l~~E~~s~~~qlssl----ekeR~~l~s~i~aLQ--------EEK  443 (643)
                      --.|+.+|.+||+.           |+.-.+|++-+..+.+.+...++-+    .|.|+|+...+.|+|        .+.
T Consensus       632 qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~~~Q~  711 (741)
T KOG4460|consen  632 QEDLMNRMKKLLHSFHSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYILSAYQR  711 (741)
T ss_pred             HHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHH
Confidence            23578888888763           3333444444444444444333332    357778888877777        233


Q ss_pred             HHHHHHHHhh
Q 006482          444 KMMQSKLRKA  453 (643)
Q Consensus       444 klLqskLRka  453 (643)
                      +-+|+-|-+.
T Consensus       712 ~~iqsiL~~L  721 (741)
T KOG4460|consen  712 KCIQSILKEL  721 (741)
T ss_pred             HHHHHHHHHH
Confidence            5566655554

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=82.51  E-value=1e+02  Score=35.61  Aligned_cols=19  Identities=11%  Similarity=0.246  Sum_probs=8.4

Q ss_pred             hhhHHHhhhhhHHHHHHHH
Q 006482          422 ISSLEKERQDFQSTIEALQ  440 (643)
Q Consensus       422 lsslekeR~~l~s~i~aLQ  440 (643)
                      +..|+.|..-.+...+.|.
T Consensus       378 ~~~L~Re~~~~~~~Y~~ll  396 (754)
T TIGR01005       378 LDALQRDAAAKRQLYESYL  396 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=82.48  E-value=7.4  Score=32.87  Aligned_cols=53  Identities=23%  Similarity=0.315  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHH---hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhh
Q 006482          347 KLQEEIKVQLVE---LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS  399 (643)
Q Consensus       347 ~Lq~Ei~aQ~~~---le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS  399 (643)
                      -|+.||+|....   |..+++.+-++.....+|..|-+.|-.||-.|++++-.+|+
T Consensus         5 aL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~   60 (61)
T PF08826_consen    5 ALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS   60 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            356666666554   34457777788888889999999999999999988887775

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=82.30  E-value=43  Score=31.18  Aligned_cols=75  Identities=20%  Similarity=0.342  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhh
Q 006482          336 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLEN  410 (643)
Q Consensus       336 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~  410 (643)
                      ..-..|...+.+++.++......++.++...+.+..++..+.++-+.|-.++-.++.....++-+.-|+...+..
T Consensus        52 ~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~  126 (151)
T PF11559_consen   52 EQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQ  126 (151)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444555555555555555555555555555556666666666666666666555555544444444433

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=82.03  E-value=59  Score=34.41  Aligned_cols=69  Identities=25%  Similarity=0.383  Sum_probs=58.4

Q ss_pred             HHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHH
Q 006482          380 AKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS  448 (643)
Q Consensus       380 ak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqs  448 (643)
                      .+.+..+|-.++..|-.+.++|-.|+..++.-+.|+++.+|++.+|.+=|=-.....+.|.+|-+.|..
T Consensus       171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~  239 (267)
T PF10234_consen  171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYE  239 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence            345667777888888888888888888888889999999999999999999999999999998876654

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PRK09973 putative outer membrane lipoprotein; Provisional

Probab=81.96  E-value=4.2  Score=36.49  Aligned_cols=44  Identities=27%  Similarity=0.365  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHH
Q 006482          337 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA  380 (643)
Q Consensus       337 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERa  380 (643)
                      .|++|..++..|...+..-..+...+++.-++|+.|+..|.+|-
T Consensus        25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~Ri   68 (85)
T PRK09973         25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRL   68 (85)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44444455555544444444455667777788888888888874

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=81.80  E-value=77  Score=33.76  Aligned_cols=30  Identities=20%  Similarity=0.363  Sum_probs=12.9

Q ss_pred             cccccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 006482          276 NQHGFYSTKHNEDFAALEQHIEDLTQEKFALQ  307 (643)
Q Consensus       276 ~~~~F~s~~~~~~faaLqqhIeDLT~EKfaLq  307 (643)
                      ..++.++.....++.  .+-+.+|..+....+
T Consensus       199 ~~~~i~~~~~~~~~~--~~~l~~l~~~l~~~~  228 (444)
T TIGR03017       199 QEKGIVSSDERLDVE--RARLNELSAQLVAAQ  228 (444)
T ss_pred             HHcCCcccCcccchH--HHHHHHHHHHHHHHH
Confidence            345555554433332  233445544444433

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS

Probab=81.56  E-value=8.2  Score=33.39  Aligned_cols=66  Identities=17%  Similarity=0.318  Sum_probs=45.6

Q ss_pred             HHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHhhhh-HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHH
Q 006482          328 TDSYNQQRSVVNQLKSEMEK-LQEEIKVQLVELESF-RNEYANVRLECNAADERAKILASEVIGLEEK  393 (643)
Q Consensus       328 t~~yNqQ~~~v~qLk~~mE~-Lq~Ei~aQ~~~le~l-~aErdaArle~~aA~ERak~LAaEVV~LEEk  393 (643)
                      .+..++--...+.+++++++ ++..++..+..+.-+ +.|.|+.+.-...+.+|-..|.+.|..||+|
T Consensus        12 ~~~~~~~~~~~~~~~~e~e~~~r~~l~~~l~kldlVtREEFd~q~~~L~~~r~kl~~LEarl~~LE~~   79 (79)
T PF04380_consen   12 AKQISEALPAAQGPREEIEKNIRARLQSALSKLDLVTREEFDAQKAVLARTREKLEALEARLAALEAQ   79 (79)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            33444444444556666654 344555555555555 8999999999999999999999999888864

BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=81.34  E-value=15  Score=31.71  Aligned_cols=46  Identities=24%  Similarity=0.263  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 006482          311 EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQL  356 (643)
Q Consensus       311 ~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~  356 (643)
                      +++-+....|-.||+.|-...++....-.+|+.+.++|+++..+..
T Consensus        14 ~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~   59 (72)
T PF06005_consen   14 QQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQ   59 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444455555555555555555555555555554444433

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF13942 Lipoprotein_20: YfhG lipoprotein

Probab=80.87  E-value=5.2  Score=40.05  Aligned_cols=50  Identities=24%  Similarity=0.288  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHHHHHHH
Q 006482          538 ALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTA  587 (643)
Q Consensus       538 aLisEla~Ere~l~~aL~~es~~~s~Lk~lN~ELsrKLE~qTQRLELlts  587 (643)
                      .|...|++||.+-.+.-.+.-.++..|+.-+..|...|+.++..||-+|-
T Consensus       109 ~lql~L~eEr~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTD  158 (179)
T PF13942_consen  109 VLQLQLSEERARYQRLQQSSDSELDALRQQQQRLQYQLDTTTRKLENLTD  158 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            46778999999998888888999999999999999999999999999985

>PRK10722 hypothetical protein; Provisional

Probab=80.57  E-value=5.8  Score=41.42  Aligned_cols=51  Identities=29%  Similarity=0.289  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHHHHHHHH
Q 006482          538 ALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQ  588 (643)
Q Consensus       538 aLisEla~Ere~l~~aL~~es~~~s~Lk~lN~ELsrKLE~qTQRLELltsq  588 (643)
                      .|+..|++||.+--+..-+..++...|+.-+++|.++|+.++.+||-+|.=
T Consensus       155 ~l~l~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdI  205 (247)
T PRK10722        155 ALQLALAEERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLTDI  205 (247)
T ss_pred             HHHHhHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466777888887666666777899999999999999999999999999863

>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional

Probab=80.56  E-value=1.1e+02  Score=34.58  Aligned_cols=58  Identities=9%  Similarity=0.173  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 006482          311 EASRALSESLAAENSSLTDSYNQQ--RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN  368 (643)
Q Consensus       311 ~~s~~l~esLa~ENsaLt~~yNqQ--~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErda  368 (643)
                      +-++++++.|-.+=+.+...-|++  ...|.-.+.++++-++.+..-+.+|..|+....-
T Consensus       215 edA~~ia~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gv  274 (434)
T PRK15178        215 KQAEFFAQRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKD  274 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            568899999999999999988875  5678888889988888888888888888766543

>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7

Probab=80.38  E-value=72  Score=32.55  Aligned_cols=58  Identities=14%  Similarity=0.240  Sum_probs=39.4

Q ss_pred             HHHHHHHHhhhH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 006482          315 ALSESLAAENSS-LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE  372 (643)
Q Consensus       315 ~l~esLa~ENsa-Lt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle  372 (643)
                      .+++.|.+++.. |..=...+...+..++..|+.++..++....++...+..|..+-.+
T Consensus        78 ~la~~L~~ev~~~l~~f~~~~~k~~k~~e~~~~k~~K~~~~~~~~~~kaKk~y~~~cke  136 (233)
T cd07649          78 KFSSKLQSEVEKPLLNFRENFKKDMKKLDHHIADLRKQLASRYAAVEKARKALLERQKD  136 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566666633 3333344566778888889999998888888888887777654433

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]

Probab=80.03  E-value=11  Score=43.79  Aligned_cols=79  Identities=16%  Similarity=0.297  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHH
Q 006482          302 EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA  380 (643)
Q Consensus       302 EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERa  380 (643)
                      +-|+..|.+..+.++-+++.-|--.|--+--+..+.++++.-++|.|+++|-....+|++++.|..+||-...++.++-
T Consensus        73 ~~~s~~r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n  151 (907)
T KOG2264|consen   73 SGYSIGRILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETN  151 (907)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence            4455666666666666666666666666666666778888888888888888888899999999999888877777764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	643
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-13
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-12
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-04
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	2e-08
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	5e-08
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	7e-08
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	1e-07
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	8e-07
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	9e-07
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	1e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	3e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	4e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	1e-04
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	2e-07
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	6e-05
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	8e-05
1m1j_C	409	Fibrinogen gamma chain; coiled coils, disulfide ri	6e-05
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	1e-04
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 78.7 bits (193), Expect = 3e-15
 Identities = 67/528 (12%), Positives = 142/528 (26%), Gaps = 156/528 (29%)

Query: 228 MEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRL-----GSNESSIENQHGFYS 282
           ++       SK    +I      + +    +       RL        E  ++    F  
Sbjct: 38  VQDMPKSILSKEEIDHI------IMSKDAVSG----TLRLFWTLLSKQEEMVQK---FVE 84

Query: 283 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQR-SVVNQL 341
                ++  L   I+   ++   + R     R   + L  +N      YN  R     +L
Sbjct: 85  EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR---DRLYNDNQVFAK-YNVSRLQPYLKL 140

Query: 342 KSEMEKLQEEIKV----------QLVELESFRNE-----------YANVRLECNAADERA 380
           +  + +L+    V            V L+   +            + N++  CN+ +   
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK-NCNSPETVL 199

Query: 381 KILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ---------- 430
           ++L      L     ++  N         N +  I S + ++  L K +           
Sbjct: 200 EMLQK----L---LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 431 ----------DFQSTI----------EAL--QEEKKMMQSKLRKASGSGKSID-FGKTAA 467
                     +    I          + L       +            +      K   
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK--- 309

Query: 468 STVNASTSTEDL-----------------AITD--TTLDNSNQDTHDDASLPR-IDASGS 507
                    +DL                 +I D   T DN      D   L   I++S +
Sbjct: 310 ---YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK--LTTIIESSLN 364

Query: 508 TLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALE------KEELVQALSSELAQS 561
            L P   R   + L+V  P           A I  + L        +  V  + ++L + 
Sbjct: 365 VLEPAEYRKMFDRLSV-FPPS---------AHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 562 SKLKDLNNELSRKLEHQTQRLELLTAQNMA--NENI--SFRQPDSASTHD---------- 607
           S ++    E +  +         +  +N    + +I   +  P +  + D          
Sbjct: 415 SLVEKQPKESTISI-PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473

Query: 608 --HTAY----ADEGDEVVE--RV---LGWI-MKLFPGGPSRRRTSKLL 643
             H  +     +  + +     V     ++  K+     +   +  +L
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 1e-08
 Identities = 75/565 (13%), Positives = 156/565 (27%), Gaps = 197/565 (34%)

Query: 14  QDYD-------SSNSSKSGFQGIEESQ----SKGNDSFPKVPTLVNSGPSHDFVTKISPQ 62
            +Y        +     S    +   Q       N  F K             V+++ P 
Sbjct: 89  INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK-----------YNVSRLQPY 137

Query: 63  NSVST-LFQSKPSNAIAL----GNG-----------HSFHSSSEGTAH-LTTSTGGSASE 105
             +   L + +P+  + +    G+G           +      +     L      S   
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197

Query: 106 V-----GLNTPSTTNFSDPVSFNTGEGKPSNSASGLAS--LQSTPFKRS----------- 147
           V      L      N++     ++      +S        L+S P++             
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257

Query: 148 --EYSGYNFD------------------AGNSFNHVPVSSATNKFTLGKSRASFLDSLNV 187
                   F+                  +  +  H+ +   +   T  + ++  L  L+ 
Sbjct: 258 AWNA----FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313

Query: 188 -------------PRASS--GTL----------FEQTEPERDSFMSSSSLNSMDVLGSSP 222
                        PR  S               ++    ++ + +  SSLN ++      
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE------ 367

Query: 223 AQNPSMEK---ETTGAFSKTTTSNIPSA------FDYLGNPTVSTSDRGDIRRLGSNESS 273
              P+  +   +    F  +   +IP+       FD      V  SD   +       S 
Sbjct: 368 ---PAEYRKMFDRLSVFPPSA--HIPTILLSLIWFD------VIKSDVMVVVNKLHKYSL 416

Query: 274 IENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ 333
           +E        K  ++       I  +  E   L+  LE   AL       + S+ D YN 
Sbjct: 417 VE--------KQPKESTI---SIPSIYLE---LKVKLENEYAL-------HRSIVDHYNI 455

Query: 334 QRSVVNQLKSE--------------MEKLQEEIKVQLVELESFRNEYANVR-LECNAADE 378
            ++  +                   ++ ++   ++ L     FR  + + R LE      
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL-----FRMVFLDFRFLE------ 504

Query: 379 RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS----SYKKKISSLEKERQDFQS 434
             KI           A     + L   +QL+  +  I      Y++ ++++     DF  
Sbjct: 505 -QKIRHDST------AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL----DFLP 553

Query: 435 TIEA---LQEEKKMMQSKLRKASGS 456
            IE      +   +++  L     +
Sbjct: 554 KIEENLICSKYTDLLRIALMAEDEA 578

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 5e-07
 Identities = 52/351 (14%), Positives = 96/351 (27%), Gaps = 129/351 (36%)

Query: 275 ENQHGF------YSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLT 328
           E+Q+ +      +     ++F    + ++D+ +   +     E    +            
Sbjct: 13  EHQYQYKDILSVFEDAFVDNFDC--KDVQDMPKSILS---KEEIDHIIMSK--------- 58

Query: 329 DSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY----ANVRLECNAADERAKILA 384
           D+ +    +   L S+    QEE+  + VE E  R  Y    + ++ E            
Sbjct: 59  DAVSGTLRLFWTLLSK----QEEMVQKFVE-EVLRINYKFLMSPIKTEQR---------- 103

Query: 385 SEVIGLEEKALRLRSNELKLERQLENSQSEISSY----KKKISSLEKERQDFQSTIEALQ 440
                  + ++  R    + +R L N     + Y     +    L +          AL 
Sbjct: 104 -------QPSMMTRMYIEQRDR-LYNDNQVFAKYNVSRLQPYLKLRQ----------ALL 145

Query: 441 EEKKMMQSKLRKAS--------GSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQD 492
           E        LR A         GSGK+                   +A+ D  L    Q 
Sbjct: 146 E--------LRPAKNVLIDGVLGSGKTW------------------VAL-DVCLSYKVQC 178

Query: 493 THDDA----SLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKE 548
             D      +L                        N P   + M+  +   I        
Sbjct: 179 KMDFKIFWLNL--------------KN-------CNSPETVLEMLQKLLYQIDP------ 211

Query: 549 ELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENI--SF 597
                         ++  +  EL R L+ +     LL   N+ N     +F
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 74.1 bits (182), Expect = 8e-14
 Identities = 58/325 (17%), Positives = 114/325 (35%), Gaps = 46/325 (14%)

Query: 289  FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVV---------- 338
               LEQ    L +EK  LQ  L+A   L          L     +   ++          
Sbjct: 880  LKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEE 939

Query: 339  ----NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKA 394
                 QL++E +K+Q+++     +LE        ++LE   AD + K +  +++ +E++ 
Sbjct: 940  EERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQN 999

Query: 395  LRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL-----QEEKKMMQSK 449
             +L      LE ++ +  + ++  ++K  +L K +   +S I  L     +EEK   + +
Sbjct: 1000 NKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELE 1059

Query: 450  LRKASGSGKSIDFGKTAASTVNASTSTED-LAITDTTLDNSNQDTHDDASLPRIDASGST 508
              K    G+S D  +  A         +  LA  +  L  +     D+ S          
Sbjct: 1060 KIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKN------- 1112

Query: 509  LLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLN 568
                               + ++ I  + + IS+L  + E    A +    Q   L +  
Sbjct: 1113 -------------------NALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEEL 1153

Query: 569  NELSRKLEHQTQRLELLTAQNMANE 593
              L  +LE              ++ 
Sbjct: 1154 EALKTELEDTLDTTATQQELRGSDY 1178

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 72.2 bits (177), Expect = 4e-13
 Identities = 25/171 (14%), Positives = 63/171 (36%)

Query: 283  TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLK 342
             K   +    +  I+ +  +   ++          + L    S LT +  ++      L 
Sbjct: 972  QKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLT 1031

Query: 343  SEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNEL 402
                K +  I    V L+        +       +  +  L  ++  L+ +   L++   
Sbjct: 1032 KLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLA 1091

Query: 403  KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 453
            K E +L+ + + +     + ++  K+ ++ +S I  LQE+ +  ++   KA
Sbjct: 1092 KKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKA 1142

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 68.3 bits (167), Expect = 5e-12
 Identities = 33/195 (16%), Positives = 76/195 (38%), Gaps = 10/195 (5%)

Query: 264  IRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE 323
            I+++  +   +E+Q+     K  ++   LE+ + DLT      +   +    L     + 
Sbjct: 985  IKKMEDDILIMEDQN----NKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESM 1040

Query: 324  NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 383
             S L     ++     +L+    KL+ E      ++   + + A ++ +    +E  +  
Sbjct: 1041 ISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAA 1100

Query: 384  ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE- 442
             + +     +         +LE  + + Q ++ S K   +  EK+++D    +EAL+ E 
Sbjct: 1101 LARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTEL 1160

Query: 443  -----KKMMQSKLRK 452
                     Q +LR 
Sbjct: 1161 EDTLDTTATQQELRG 1175

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 64.5 bits (157), Expect = 8e-11
 Identities = 23/161 (14%), Positives = 62/161 (38%), Gaps = 3/161 (1%)

Query: 286  NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 345
             E    L +           L+  L+      + L      L    +     + +L++++
Sbjct: 1024 EEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQI 1083

Query: 346  EKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLE 405
             +L+ ++  +  EL++      +   + N A ++ + L S +  L+E     ++   K E
Sbjct: 1084 AELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAE 1143

Query: 406  RQLENSQSEISSYKKKISSLEKE---RQDFQSTIEALQEEK 443
            +Q  +   E+ + K ++         +Q+ + +     ++K
Sbjct: 1144 KQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 63.3 bits (154), Expect = 2e-10
 Identities = 53/324 (16%), Positives = 113/324 (34%), Gaps = 36/324 (11%)

Query: 282  STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQL 341
             T+  E+  A ++ ++   + +   +  L+        L  E + L     ++     +L
Sbjct: 852  VTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ----EKLQAETEL 907

Query: 342  KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE 401
             +E E+++  +  +  ELE   +E             R +        L+ +  +++   
Sbjct: 908  YAEAEEMRVRLAAKKQELEEILHEME----------ARIEEEEERSQQLQAEKKKMQQQM 957

Query: 402  LKLERQLE-------NSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 454
            L LE QLE         Q E  +   KI  +E +    +     L +E+K+++ ++   +
Sbjct: 958  LDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLT 1017

Query: 455  GSGKSIDFGKTAASTVNAS--TSTEDLAITDTTLDNSNQDTHD------------DASLP 500
             +    +      + +     +   +L +     + S Q+                  + 
Sbjct: 1018 TNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIA 1077

Query: 501  RIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNI-NALISELALEKEELVQALSSELA 559
             + A  + L  +  +   E  A     +      N     I EL     +L + L SE A
Sbjct: 1078 ELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKA 1137

Query: 560  QSSKLKDLNNELSRKLEHQTQRLE 583
              +K +    +LS +LE     LE
Sbjct: 1138 ARNKAEKQKRDLSEELEALKTELE 1161

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 57.9 bits (140), Expect = 8e-09
 Identities = 52/312 (16%), Positives = 110/312 (35%), Gaps = 27/312 (8%)

Query: 299  LTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE 358
            L      L +       +      E     +   +  + + +L+ +  +L EE  +   +
Sbjct: 842  LFFXIXPLLKVTRQEEEMQA-KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEK 900

Query: 359  LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY 418
            L++    YA        A+E    LA++   LEE    + +   + E + +  Q+E    
Sbjct: 901  LQAETELYAE-------AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKM 953

Query: 419  KKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSID------------FGKTA 466
            ++++  LE++ ++ ++  + LQ EK     K++K       ++              +  
Sbjct: 954  QQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERV 1013

Query: 467  ASTVNASTSTEDLAITDTTLDNSNQDTHDD--ASLPRIDASGSTLLPESGRLALEG---L 521
            +         E+ A   T L N ++    +    L + + S   L  E  +  LEG    
Sbjct: 1014 SDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQEL--EKIKRKLEGESSD 1071

Query: 522  AVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQR 581
                  +    I  + A +++   E +  +  L  E +Q +       EL   +    + 
Sbjct: 1072 LHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQED 1131

Query: 582  LELLTAQNMANE 593
            LE   A     E
Sbjct: 1132 LESEKAARNKAE 1143

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 60.9 bits (148), Expect = 9e-10
 Identities = 25/159 (15%), Positives = 57/159 (35%), Gaps = 12/159 (7%)

Query: 292  LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 351
            L++ I++  +E  +L   +        +   +  S  +             + +  LQEE
Sbjct: 933  LQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEE 992

Query: 352  IKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENS 411
            I     EL   + E   +    +      + L SE   L+E+   L++ + +L R++ + 
Sbjct: 993  IAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE---LKEQNTLLKTEKEELNRRIHDQ 1049

Query: 412  QSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 450
              EI+         E   +      + L+ +    + + 
Sbjct: 1050 AKEIT---------ETMEKKLVEETKQLELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 24/149 (16%), Positives = 54/149 (36%), Gaps = 3/149 (2%)

Query: 305  ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN 364
               RS+E  + L   L  +   L    ++Q      L  +M  L+     +  +L S   
Sbjct: 911  IEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVE 970

Query: 365  EYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS 424
                   E   A  R   L  E+  L ++  + ++ +  +E   +  + E    ++ +S 
Sbjct: 971  RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHET---EQLVSE 1027

Query: 425  LEKERQDFQSTIEALQEEKKMMQSKLRKA 453
            L+++    ++  E L         ++ + 
Sbjct: 1028 LKEQNTLLKTEKEELNRRIHDQAKEITET 1056

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 12/164 (7%)

Query: 290  AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 349
              LE  I  L ++       ++      +SL  + ++L  +Y+ +   +      +   +
Sbjct: 924  IGLENKIMQLQRK-------IDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSE 976

Query: 350  EEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLE 409
            EE K     + S + E A +R E +      K +       + +         +L+ Q  
Sbjct: 977  EEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE---TEQLVSELKEQNT 1033

Query: 410  NSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 453
              ++E     ++I    KE  +     + L EE K ++  L   
Sbjct: 1034 LLKTEKEELNRRIHDQAKEITETME--KKLVEETKQLELDLNDE 1075

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 56.3 bits (136), Expect = 3e-08
 Identities = 39/242 (16%), Positives = 82/242 (33%), Gaps = 35/242 (14%)

Query: 347  KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER 406
             +Q+ ++  L  +   R   A V L+C      AK    ++        R +   + LE 
Sbjct: 869  IIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLEN 928

Query: 407  QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTA 466
            ++   Q +I    K+  SL ++  + + T     E+ +    +LR +          +  
Sbjct: 929  KIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMS--------EEEAK 980

Query: 467  ASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIP 526
             +T    +  E++A     L  +  +                         +E  A    
Sbjct: 981  NATNRVLSLQEEIAKLRKELHQTQTEKKT----------------------IEEWADKYK 1018

Query: 527  HDQMRMIHNINALISELALEKEELVQALSSEL-----AQSSKLKDLNNELSRKLEHQTQR 581
            H+  +++  +    + L  EKEEL + +  +          KL +   +L   L  +  R
Sbjct: 1019 HETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLR 1078

Query: 582  LE 583
             +
Sbjct: 1079 YQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 29/163 (17%), Positives = 64/163 (39%), Gaps = 13/163 (7%)

Query: 293  EQHIEDLTQEKFALQRSLEASRALSE--SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE 350
              H     +    LQ       A  E   L  E  S+     + + +   L++++ +LQ 
Sbjct: 880  RVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSV----ERYKKLHIGLENKIMQLQR 935

Query: 351  EIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLEN 410
            +I  Q  E +S   +  N  LE   + E  K+ +       E+             ++ +
Sbjct: 936  KIDEQNKEYKSLLEKMNN--LEITYSTETEKLRS-----DVERLRMSEEEAKNATNRVLS 988

Query: 411  SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 453
             Q EI+  +K++   + E++  +   +  + E + + S+L++ 
Sbjct: 989  LQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQ 1031

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 290  AALEQHIEDLTQEKFALQRSLEASRALSE---SLAAENSSLTDSYNQQRSVVNQLKSEME 346
                   E L  +   L+ S E ++  +    SL  E + L    +Q ++    ++   +
Sbjct: 956  ITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWAD 1015

Query: 347  KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER 406
            K + E +  + EL+    +   ++ E    + R    A E+    EK L   + +L+L+ 
Sbjct: 1016 KYKHETEQLVSELKE---QNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDL 1072

Query: 407  QLENSQSE 414
              E  + +
Sbjct: 1073 NDERLRYQ 1080

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 23/171 (13%), Positives = 66/171 (38%)

Query: 284 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 343
           +  E  A   Q +E+  +     +R ++   + ++    +         + + +      
Sbjct: 101 RAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR 160

Query: 344 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 403
           + E++  ++ +   +LE           +C   +E  K + + +  LE +A +    E K
Sbjct: 161 KYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDK 220

Query: 404 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 454
            E +++    ++   + +    E+     + +I+ L++E    + K +  S
Sbjct: 221 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAIS 271

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 53.9 bits (129), Expect = 5e-08
 Identities = 24/168 (14%), Positives = 64/168 (38%)

Query: 286 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 345
            E     E+   D   +  +L R ++      +      ++      +     ++ +  M
Sbjct: 68  QEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGM 127

Query: 346 EKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLE 405
           + ++   +    ++E    +    +     AD + + +A +++ +E    R        E
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187

Query: 406 RQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 453
            +    + EI +    + SLE + + +    +  +EE K++  KL++A
Sbjct: 188 GKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEA 235

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 53.5 bits (128), Expect = 7e-08
 Identities = 20/158 (12%), Positives = 60/158 (37%)

Query: 296 IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ 355
           ++ + ++   L+   E +   ++   A+  +  D   Q    +  L+ +++  ++E+   
Sbjct: 1   MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60

Query: 356 LVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI 415
              L+  + +      +   A+     L   +   EE+  R +       ++LE ++   
Sbjct: 61  SEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAA 120

Query: 416 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 453
              ++ +  +E   Q  +  +E  + + K  +     A
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDA 158

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 52.7 bits (126), Expect = 1e-07
 Identities = 21/173 (12%), Positives = 61/173 (35%)

Query: 284 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 343
           +  ++  +L++ ++    E      +L+ ++   E    + +            +   + 
Sbjct: 38  QLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEE 97

Query: 344 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 403
           E+++ QE +   L +LE                + RA+    ++   E +    +     
Sbjct: 98  ELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAED 157

Query: 404 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGS 456
            +R+ E    ++   +  +   E+  +  +     L+EE K + + L+     
Sbjct: 158 ADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQ 210

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 50.0 bits (119), Expect = 8e-07
 Identities = 19/164 (11%), Positives = 64/164 (39%)

Query: 291 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE 350
           A+++ ++ L  +K       + + A  ++    +  L D     +  +   + E++K  E
Sbjct: 3   AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSE 62

Query: 351 EIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLEN 410
            +K    +LE    +  +   +  + + R ++   E+   +E+         + E+  + 
Sbjct: 63  ALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADE 122

Query: 411 SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 454
           S+  +   + +    E++ +  +  ++  +   +    K  + +
Sbjct: 123 SERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVA 166

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 50.0 bits (119), Expect = 9e-07
 Identities = 17/167 (10%), Positives = 60/167 (35%)

Query: 287 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEME 346
           ++     + ++D  ++    ++    + A   SL        +  ++ +  +     ++E
Sbjct: 55  DELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLE 114

Query: 347 KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER 406
           + ++        ++   +       +    + + K         + K   +    + +E 
Sbjct: 115 EAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIES 174

Query: 407 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 453
            LE ++      + K + LE+E +   + +++L+ + +    K  K 
Sbjct: 175 DLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKY 221

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 26/170 (15%), Positives = 64/170 (37%)

Query: 284 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 343
           +   D  A E   + L  E  +LQ+ L+A+    +  +       +            ++
Sbjct: 24  EAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEA 83

Query: 344 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 403
           ++  L   I++   EL+  +   A    +   A++ A      +  +E +A +       
Sbjct: 84  DVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEI 143

Query: 404 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 453
            E QL+ ++       +K   + ++    +S +E  +E  ++ + K  + 
Sbjct: 144 QEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAEL 193

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 48.5 bits (115), Expect = 3e-06
 Identities = 18/168 (10%), Positives = 57/168 (33%)

Query: 286 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 345
            +     E+  ++  +    ++   +      E    +                ++  ++
Sbjct: 110 LQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKL 169

Query: 346 EKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLE 405
             ++ +++      E    + A +  E        K L ++     +K  +       L 
Sbjct: 170 VIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLS 229

Query: 406 RQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 453
            +L+ +++     ++ ++ LEK   D +  + A + + K +  +L  A
Sbjct: 230 DKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHA 277

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 48.1 bits (114), Expect = 4e-06
 Identities = 22/164 (13%), Positives = 60/164 (36%)

Query: 287 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEME 346
           +     E+ ++ +       +  +E      +            Y +    +  ++S++E
Sbjct: 118 KAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLE 177

Query: 347 KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER 406
           + +E  ++   +      E   V     + + +A+  + +    EE+   L     + E 
Sbjct: 178 RAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAET 237

Query: 407 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 450
           + E ++  ++  +K I  LE E    +   +A+ EE     + +
Sbjct: 238 RAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM 281

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 30/250 (12%), Positives = 80/250 (32%), Gaps = 6/250 (2%)

Query: 339 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 398
           + +K +M+ L+ + +  L   +    +           ++    L  ++   E++  +  
Sbjct: 2   DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYS 61

Query: 399 SNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGK 458
                 + +LE ++ + +  +  ++SL +  Q F+  ++  QE       KL +A    K
Sbjct: 62  EALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAE---K 118

Query: 459 SIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLAL 518
           + D  +     + +    ++  +    +         + +  + +     L+     L  
Sbjct: 119 AADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLER 178

Query: 519 EGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQ 578
                            +   I  +    + L         +  K ++    LS KL+  
Sbjct: 179 AEERAE---LSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEA 235

Query: 579 TQRLELLTAQ 588
             R E     
Sbjct: 236 ETRAEFAERS 245

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256

 Score = 51.7 bits (123), Expect = 2e-07
 Identities = 18/117 (15%), Positives = 54/117 (46%), Gaps = 2/117 (1%)

Query: 338 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 397
           ++ L+  + + ++++   L + E+      N+  E  A   +       +     K   +
Sbjct: 20  IDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASI 79

Query: 398 RS--NELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 452
           +   +E+K ER+L +   E    K++ +   +E ++ Q+ I+   E+++ ++ ++ +
Sbjct: 80  QKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLE 136

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168

 Score = 43.2 bits (101), Expect = 6e-05
 Identities = 26/160 (16%), Positives = 64/160 (40%), Gaps = 4/160 (2%)

Query: 296 IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ 355
           +  L ++       L      +  L   ++ ++ S +Q  S+  +L+     L+      
Sbjct: 8   LSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQT 67

Query: 356 LVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI 415
             +    +      R +     E    L + +  L+E+   L+ N  K+E + + +Q  +
Sbjct: 68  DKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDML 127

Query: 416 SSYKKKISSLEKER----QDFQSTIEALQEEKKMMQSKLR 451
           +  +K+ ++LE +     +  Q  +E    E K+ +++L 
Sbjct: 128 NHSEKEKNNLEIDLNYKLKSLQQRLEQEVNEHKVTKARLT 167

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168

 Score = 42.8 bits (100), Expect = 8e-05
 Identities = 20/111 (18%), Positives = 49/111 (44%)

Query: 344 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 403
           ++ +LQ++++     L +  +    +R       +    L S    L+E+   L +++ +
Sbjct: 7   KLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQ 66

Query: 404 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 454
            ++     Q+ + + ++      +   D Q+ I +LQEE K ++  L K  
Sbjct: 67  TDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVE 117

>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C Length = 409

 Score = 44.9 bits (106), Expect = 6e-05
 Identities = 18/115 (15%), Positives = 43/115 (37%), Gaps = 1/115 (0%)

Query: 339 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK-ILASEVIGLEEKALRL 397
             +     K +     +L+E+E    +  N         +  K I  SE   L +   +L
Sbjct: 23  CGIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQL 82

Query: 398 RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 452
                K+  ++   ++ I +++  I  L        + I  L+++   ++S  ++
Sbjct: 83  TQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHCQE 137

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Length = 129

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 16/115 (13%), Positives = 49/115 (42%)

Query: 338 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 397
           +  +K E  +L+E ++      +    +  ++  E N    + +     +   EE+  +L
Sbjct: 15  MASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQL 74

Query: 398 RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 452
             N+++LE +++     +   ++  + L  +++  +     L+ +   ++  L K
Sbjct: 75  IKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTLAK 129

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Length = 155

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 27/163 (16%), Positives = 70/163 (42%), Gaps = 14/163 (8%)

Query: 292 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 351
           LE  +E+L  + + L+  +   + L E                       + +  +L+EE
Sbjct: 5   LEDKVEELLSKNYHLENEVARLKKLLERAEER--------------AELSEGKSAELEEE 50

Query: 352 IKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENS 411
           +K     L+S   +      + +  +E  K+L+ ++   E +A     +  KLE+ +++ 
Sbjct: 51  LKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDL 110

Query: 412 QSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 454
           + E+ + K K  ++ +E +  +  +E L  +   +++++ +  
Sbjct: 111 EDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLK 153

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	643
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.24
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.21
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	97.83
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	97.62
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.01
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.98
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.71
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.65
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.53
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	96.47
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.3
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	96.28
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	95.67
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	94.62
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	94.62
2efk_A	301	CDC42-interacting protein 4; EFC domain, structura	94.56
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	94.51
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	94.34
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	93.81
3abh_A	312	Pacsin2, protein kinase C and casein kinase substr	93.66
2efl_A	305	Formin-binding protein 1; EFC domain, structural g	93.47
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	93.46
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	92.74
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	92.71
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	92.43
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	92.27
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	91.96
3aco_A	350	Pacsin2, protein kinase C and casein kinase substr	91.67
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	91.48
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	91.48
4dyl_A	406	Tyrosine-protein kinase FES/FPS; structural genomi	91.15
2x3v_A	337	Syndapin I, protein kinase C and casein kinase sub	90.75
3i2w_A	290	Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocyt	90.51
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	90.42
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	89.74
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	88.58
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	87.1
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	86.87
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	85.37
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	84.8
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	84.2
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	84.13
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	83.99
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	82.65
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	82.51
3m3w_A	320	Pacsin3, protein kinase C and casein kinase II sub	82.4
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	82.28
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	81.33
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	81.22
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	80.52
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	80.25

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=98.24  E-value=0.00082  Score=60.15  Aligned_cols=38  Identities=13%  Similarity=0.320  Sum_probs=15.2

Q ss_pred             HHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHH
Q 006482          405 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE  442 (643)
Q Consensus       405 erele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEE  442 (643)
                      +.++..+..++..+..++..+...+..+...+..++++
T Consensus       222 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (284)
T 1c1g_A          222 EEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDE  259 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444444444444444433333333

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=98.21  E-value=0.00098  Score=59.64  Aligned_cols=70  Identities=7%  Similarity=0.106  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006482          293 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF  362 (643)
Q Consensus       293 qqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l  362 (643)
                      +..|+++..+.-.+...+.....-.+.+..+-..+....+.....+..+...+.+++.++......+..+
T Consensus        26 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (284)
T 1c1g_A           26 EADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLF   95 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333344433333344444344444444433334444444444443333333333333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=97.83  E-value=2.6e-05  Score=89.76  Aligned_cols=19  Identities=11%  Similarity=0.400  Sum_probs=10.0

Q ss_pred             CchhhHHHHHHHHHHHHHH
Q 006482          284 KHNEDFAALEQHIEDLTQE  302 (643)
Q Consensus       284 ~~~~~faaLqqhIeDLT~E  302 (643)
                      ....++..|++-|+++..+
T Consensus       854 ~~~~El~~L~~eL~el~~~  872 (1184)
T 1i84_S          854 RQEEEMQAKDEELQRTKER  872 (1184)
T ss_dssp             THHHHCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3445566665555554443

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=97.62  E-value=0.00021  Score=82.44  Aligned_cols=10  Identities=10%  Similarity=0.507  Sum_probs=4.3

Q ss_pred             CCcccccccc
Q 006482          176 KSRASFLDSL  185 (643)
Q Consensus       176 rSRpSFLDSl  185 (643)
                      ...|.|.--|
T Consensus       675 ~t~phfvRCI  684 (1184)
T 1i84_S          675 NTNPNFVRCI  684 (1184)
T ss_dssp             TSEEEECCEE
T ss_pred             hcCCCceeee
Confidence            3444444443

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.12  E-value=0.082  Score=51.46  Aligned_cols=122  Identities=13%  Similarity=0.159  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHhh
Q 006482          294 QHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF--RNEYANVRL  371 (643)
Q Consensus       294 qhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l--~aErdaArl  371 (643)
                      ..|+.|..++-.|...|+...+-...|.+.-.++...+......+..++.+++.++.-|+.....+.++  .-||++..-
T Consensus        18 ~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~k   97 (256)
T 3na7_A           18 KEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNI   97 (256)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            344555555544444444443333333333333444444444444444444444444444444444444  357777777


Q ss_pred             hhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHH
Q 006482          372 ECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI  415 (643)
Q Consensus       372 e~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~  415 (643)
                      +...+..|-..+-.++..+.+++-.++...-.++.+++.+..++
T Consensus        98 Eie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l  141 (256)
T 3na7_A           98 EEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLA  141 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777777777666544444444444444433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.01  E-value=0.0095  Score=62.07  Aligned_cols=133  Identities=16%  Similarity=0.159  Sum_probs=59.3

Q ss_pred             HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHH
Q 006482          318 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL  397 (643)
Q Consensus       318 esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~L  397 (643)
                      ...+..++.+.+..|+....|..|+.++.+.++.++.+..+++..+.++.....+...   -...+..++-.++++...+
T Consensus       445 ~~~~~~~e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~  521 (597)
T 3oja_B          445 GVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLAR---SSDNLNKVFTHLKERQAFK  521 (597)
T ss_dssp             ---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSC---HHHHHHHHHHHHHHHHHHH
T ss_pred             hhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCC---HHHHHHHHHHHHHhhhhhh
Confidence            3334466666666666666666666666666666665555555443333211111111   1233444444444444443


Q ss_pred             hhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006482          398 RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA  453 (643)
Q Consensus       398 RS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka  453 (643)
                      -....+.+++++....+.+.+++++..+++.-...+..+..+++|...+..+|.+.
T Consensus       522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l  577 (597)
T 3oja_B          522 LRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL  577 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444445555555554555555555555544444444443

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.98  E-value=0.053  Score=69.17  Aligned_cols=152  Identities=16%  Similarity=0.253  Sum_probs=106.3

Q ss_pred             cccccccCCchhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HhhhHHHHHHHH
Q 006482          276 NQHGFYSTKHNEDFAA-----LEQHIEDLTQEKFALQRSLEASRALSESLA-----------------AENSSLTDSYNQ  333 (643)
Q Consensus       276 ~~~~F~s~~~~~~faa-----LqqhIeDLT~EKfaLqR~L~~s~~l~esLa-----------------~ENsaLt~~yNq  333 (643)
                      +-|+|.++..==+|=.     |.+..+++...+--|+.||+|=.+.+++++                 .|.+++...--.
T Consensus      1887 ~R~~yvTP~syLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~ 1966 (3245)
T 3vkg_A         1887 GRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQ 1966 (3245)
T ss_dssp             SCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567778877666643     567778888888888888888665554443                 334444444444


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------------HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHH
Q 006482          334 QRSVVNQLKSEMEKLQEEIKVQLVELESF-----------------RNEYANVRLECNAADERAKILASEVIGLEEKALR  396 (643)
Q Consensus       334 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l-----------------~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~  396 (643)
                      ....+++-|..+++.+.++++|..+.+..                 +.+.+.|+.+..+|.++-+..-+++..||+++.+
T Consensus      1967 ~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~ 2046 (3245)
T 3vkg_A         1967 DQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIAT 2046 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555666666666666555554443                 4556677888888899989999999999999999


Q ss_pred             HhhhhhhhHHHHhhhHHHHHHHHHHhhhHHH
Q 006482          397 LRSNELKLERQLENSQSEISSYKKKISSLEK  427 (643)
Q Consensus       397 LRS~eLKlerele~l~~E~~s~~~qlsslek  427 (643)
                      |+-+-=++-+|.+.+..+++.|++++..+++
T Consensus      2047 L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~ 2077 (3245)
T 3vkg_A         2047 YKEEYATLIRETEQIKTESSKVKNKVDRSIA 2077 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9877767777778888888888888876544

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.71  E-value=0.28  Score=47.72  Aligned_cols=124  Identities=10%  Similarity=0.100  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh--hhhhhHHH
Q 006482          301 QEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR--LECNAADE  378 (643)
Q Consensus       301 ~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaAr--le~~aA~E  378 (643)
                      .+-..|...+..-.+-.+.|.++-..+.+++..-...+..++.++.+++.+|+.-...++..+.--++++  -++.+...
T Consensus        18 ~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~k   97 (256)
T 3na7_A           18 KEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNI   97 (256)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            3444444444444555666666666666666666666666666666666666555544444443333322  12233333


Q ss_pred             HHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhh
Q 006482          379 RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS  424 (643)
Q Consensus       379 Rak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlss  424 (643)
                      .-..+..++-.||++++++--..=.++.+++.+..++...++.+..
T Consensus        98 Eie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~  143 (256)
T 3na7_A           98 EEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALE  143 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444332223333344444444444444433

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.65  E-value=0.029  Score=65.10  Aligned_cols=43  Identities=16%  Similarity=0.153  Sum_probs=17.8

Q ss_pred             HHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHH
Q 006482          381 KILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLE  426 (643)
Q Consensus       381 k~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlssle  426 (643)
                      ..+..|.-.||+++.+++.   .|+..+..+..|...++.|+..++
T Consensus      1001 ~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A         1001 HQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444431   223444444444444444444443

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.53  E-value=0.22  Score=63.87  Aligned_cols=153  Identities=13%  Similarity=0.191  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-----------------HH
Q 006482          295 HIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ-----------------LV  357 (643)
Q Consensus       295 hIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ-----------------~~  357 (643)
                      .|++|..|=-.++-.|++.++-++.+-.+-..=+...+++...|.+++.+++.-+.+|++.                 +.
T Consensus      1935 ~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~ 2014 (3245)
T 3vkg_A         1935 QVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLRE 2014 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHH
Confidence            3455555545555556666666665555555555566666666666666665555554433                 23


Q ss_pred             HhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHH
Q 006482          358 ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE  437 (643)
Q Consensus       358 ~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~  437 (643)
                      +|+.+.+|.+.|+....++.+.-+.+-.+|-.|.++....-.+.-+++.+++.....+.+.++=+..|.-|+..-...++
T Consensus      2015 ~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~ 2094 (3245)
T 3vkg_A         2015 EVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSE 2094 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHH
Confidence            56677777777777777777777777777777777777777777777777777777777777777777777776666666


Q ss_pred             HHHHHHHHHH
Q 006482          438 ALQEEKKMMQ  447 (643)
Q Consensus       438 aLQEEKklLq  447 (643)
                      .++++.+.|-
T Consensus      2095 ~l~~~~~~L~ 2104 (3245)
T 3vkg_A         2095 NFNTQMSTVV 2104 (3245)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhcc
Confidence            6666554443

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=96.47  E-value=0.38  Score=46.01  Aligned_cols=134  Identities=16%  Similarity=0.189  Sum_probs=83.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 006482          286 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE  365 (643)
Q Consensus       286 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aE  365 (643)
                      ++-+..||.-|+|+...=-+-..+.++.++..-.|......+-...++....+..|+.....|++++       ..+.+.
T Consensus         5 neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~-------~~LQa~   77 (168)
T 3o0z_A            5 NEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDY-------YQLQAI   77 (168)
T ss_dssp             -----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence            4556778888998876545555666677776666655555555555555555555555555555554       444444


Q ss_pred             HHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhH
Q 006482          366 YANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQ  433 (643)
Q Consensus       366 rdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~  433 (643)
                      .+.=|-.+..+.|+..-|-.=|-.|++.+-++|..+-|++-+...|...       +..+||+...+.
T Consensus        78 L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ek-------l~~lEKe~a~~e  138 (168)
T 3o0z_A           78 LEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDM-------LNHSEKEKNNLE  138 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhh
Confidence            4444445667778888787888888888888888888766665555544       555555555544

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.30  E-value=0.071  Score=61.90  Aligned_cols=24  Identities=17%  Similarity=0.278  Sum_probs=12.8

Q ss_pred             HHHHHhhhHHHhhhhhHHHHHHHH
Q 006482          417 SYKKKISSLEKERQDFQSTIEALQ  440 (643)
Q Consensus       417 s~~~qlsslekeR~~l~s~i~aLQ  440 (643)
                      .++.++..|+++-+.|+..++.|.
T Consensus      1020 ~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A         1020 ETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334555555555555555555544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.28  E-value=0.032  Score=58.16  Aligned_cols=76  Identities=13%  Similarity=0.167  Sum_probs=30.6

Q ss_pred             HHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHH
Q 006482          368 NVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQ  447 (643)
Q Consensus       368 aArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLq  447 (643)
                      ..........+|.+.+..+.-.+++++-+.       +++++.+..|+...+++++...+....+...+.++..|.|.|+
T Consensus       506 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~  578 (597)
T 3oja_B          506 NLNKVFTHLKERQAFKLRETQARRTEADAK-------QKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE  578 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHhhhhh-------hcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            333333444445544444444444444332       2222233333333333333333333333444444444444444


Q ss_pred             HHH
Q 006482          448 SKL  450 (643)
Q Consensus       448 skL  450 (643)
                      .++
T Consensus       579 ~~~  581 (597)
T 3oja_B          579 AKK  581 (597)
T ss_dssp             HTT
T ss_pred             HHh
Confidence            443

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=95.67  E-value=0.27  Score=47.64  Aligned_cols=100  Identities=12%  Similarity=0.185  Sum_probs=64.9

Q ss_pred             HHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHH----HHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHH
Q 006482          351 EIKVQLVELESFRNEYANVRLECNAADERAKILA----SEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLE  426 (643)
Q Consensus       351 Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LA----aEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlssle  426 (643)
                      +|.-.......++.+++.++.++++=.+-+|-|-    +|+-.+|-++..|++..-+++.+++.++.+......+..   
T Consensus        11 e~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~---   87 (189)
T 2v71_A           11 ETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSY---   87 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            3333334444555566666666666667776655    456777777777777777777776666655544444311   


Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006482          427 KERQDFQSTIEALQEEKKMMQSKLRKA  453 (643)
Q Consensus       427 keR~~l~s~i~aLQEEKklLqskLRka  453 (643)
                      +.=..|+..|..|++++..|+.+||..
T Consensus        88 ~~~~~Lq~el~~l~~~~~~l~~~ireL  114 (189)
T 2v71_A           88 KQVSVLEDDLSQTRAIKEQLHKYVREL  114 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            124456777888889999999999987

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=94.62  E-value=1.3  Score=39.50  Aligned_cols=26  Identities=31%  Similarity=0.363  Sum_probs=18.4

Q ss_pred             hhhHHHHHHHHHHHHHhHHHHHHHHh
Q 006482          373 CNAADERAKILASEVIGLEEKALRLR  398 (643)
Q Consensus       373 ~~aA~ERak~LAaEVV~LEEk~l~LR  398 (643)
                      |.+|.||...|.+.=+.||.++-.+.
T Consensus        64 l~e~EE~~~~L~~~k~eLe~~l~el~   89 (129)
T 2fxo_A           64 LADAEERCDQLIKNKIQLEAKVKEMN   89 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777777777777777777776553

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=94.62  E-value=0.89  Score=39.45  Aligned_cols=91  Identities=19%  Similarity=0.271  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHH
Q 006482          336 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI  415 (643)
Q Consensus       336 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~  415 (643)
                      +-|..+|.+|..|+.+       .+.....++.+...+..+..|+..+-.||..|--|+..+       +.+++.+...+
T Consensus         2 ~~MdaIKkKm~~lk~e-------~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~l-------E~eld~~ee~L   67 (101)
T 3u1c_A            2 GHMDAIKKKMQMLKLD-------KENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVT-------EDSRDQVLEEL   67 (101)
T ss_dssp             CHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence            4577888888666665       344444455555556666777777777777777766644       66666666666


Q ss_pred             HHHHHHhhhHHHhhhhhHHHHHHHH
Q 006482          416 SSYKKKISSLEKERQDFQSTIEALQ  440 (643)
Q Consensus       416 ~s~~~qlsslekeR~~l~s~i~aLQ  440 (643)
                      .....+++..+|.+......|.+|+
T Consensus        68 ~ea~~kLee~ek~~~~aE~ev~~L~   92 (101)
T 3u1c_A           68 HKSEDSLLFAEENAAKAESEVASLN   92 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6777777777777776666666664

>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4

Probab=94.56  E-value=3.3  Score=39.47  Aligned_cols=133  Identities=12%  Similarity=0.192  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHH------------hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 006482          305 ALQRSLEASRALSESLAAENSSLTDSYNQ------------QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE  372 (643)
Q Consensus       305 aLqR~L~~s~~l~esLa~ENsaLt~~yNq------------Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle  372 (643)
                      .+.++...-..-++.+|..+..+.+.++.            +.......+..+++++.++..+...++..+..|+.+-.+
T Consensus        66 t~~~~w~~~l~~~e~~a~~h~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e  145 (301)
T 2efk_A           66 SQQQSFVQILQEVNDFAGQRELVAENLSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCRE  145 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444445555556666555555532            233334455667777778888888888888888887776


Q ss_pred             hhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhh-----hhhHHHHHHHH
Q 006482          373 CNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKER-----QDFQSTIEALQ  440 (643)
Q Consensus       373 ~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR-----~~l~s~i~aLQ  440 (643)
                      +..|..........-..=...+.+++....+....++.++   ..|..+|..+.+.+     .+|-.+++.||
T Consensus       146 ~e~a~~~~~~a~~~~~~s~~~~eK~~~k~~~~~~~~~~a~---~~Y~~~v~~~n~~~~~~~~~~~p~~~~~lQ  215 (301)
T 2efk_A          146 AEKAAQTAERLDQDINATKADVEKAKQQAHLRSHMAEESK---NEYAAQLQRFNRDQAHFYFSQMPQIFDKLQ  215 (301)
T ss_dssp             HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccCcccCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666554433211100000011122222222233333333   44666666666553     23555667666

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=94.51  E-value=2.2  Score=44.85  Aligned_cols=133  Identities=14%  Similarity=0.146  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-hH-------------------HHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 006482          305 ALQRSLEASRALSESLAAENSSLTDSYNQQ-RS-------------------VVNQLKSEMEKLQEEIKVQLVELESFRN  364 (643)
Q Consensus       305 aLqR~L~~s~~l~esLa~ENsaLt~~yNqQ-~~-------------------~v~qLk~~mE~Lq~Ei~aQ~~~le~l~a  364 (643)
                      .|..+...-..-++.+|..+..+......+ -.                   ....++..+++++++++.+...|+..+.
T Consensus        78 tl~~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e~~~K~~~~~~kerK~~~~~~~k~qk~l~~~~~~l~KaKk  157 (486)
T 3haj_A           78 TVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKK  157 (486)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCSSSSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555556667777777776666322 11                   2345556678888888888899999999


Q ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhh----HHHHHHHH
Q 006482          365 EYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDF----QSTIEALQ  440 (643)
Q Consensus       365 ErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l----~s~i~aLQ  440 (643)
                      .|..+-.+...|..+.+..-.+-..=..++.+++...-|...+++.++   ..|+..|..+.+.|++.    ..+++.||
T Consensus       158 ~Y~~~cke~e~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~~~~a~---~~Y~~~v~~~n~~~~~y~~~~~~~~~~lQ  234 (486)
T 3haj_A          158 AHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTK---EKYEKSLKELDQGTPQYMENMEQVFEQCQ  234 (486)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCSCSHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998888887777655544311100001223333333344444444444   44666666666666543    33445555

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=94.34  E-value=0.22  Score=42.84  Aligned_cols=67  Identities=18%  Similarity=0.287  Sum_probs=55.3

Q ss_pred             hHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhC
Q 006482          389 GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG  455 (643)
Q Consensus       389 ~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka~~  455 (643)
                      .||+||.++=-----|+-++++|+.+-..+..+.+.+...|..|...++.|++|....++|||...+
T Consensus        10 qLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLg   76 (81)
T 2jee_A           10 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG   76 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4888888763333345677888888888888889998888999999999999999999999998754

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=93.81  E-value=0.43  Score=43.75  Aligned_cols=70  Identities=17%  Similarity=0.225  Sum_probs=53.9

Q ss_pred             HHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 006482          383 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK  452 (643)
Q Consensus       383 LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRk  452 (643)
                      +|.|...+.+++.+|+.+--.+++++..++.++.+++-++..+.++-..++.-+++||++.+.|++.|..
T Consensus        66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~  135 (138)
T 3hnw_A           66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND  135 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3445555555566665555566888888888888888899998888888999999999999999887753

>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A

Probab=93.66  E-value=2.9  Score=40.59  Aligned_cols=147  Identities=16%  Similarity=0.182  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh-HHH-------------------HHHHHHHHHHHHHHHHHHHHhhhhHH
Q 006482          305 ALQRSLEASRALSESLAAENSSLTDSYNQQR-SVV-------------------NQLKSEMEKLQEEIKVQLVELESFRN  364 (643)
Q Consensus       305 aLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~-~~v-------------------~qLk~~mE~Lq~Ei~aQ~~~le~l~a  364 (643)
                      .|..+...-..-++.+|..+..+.+..+.+- ..+                   ..+...+++++.++..+...++..+.
T Consensus        85 tl~~aw~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~k~~~~~~ke~k~~~~~~~k~~k~~~~~~~~l~KaK~  164 (312)
T 3abh_A           85 TVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKK  164 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCTTSSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666666667777777777777666432 222                   34555667777778788888888888


Q ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhh----hHHHHHHHH
Q 006482          365 EYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD----FQSTIEALQ  440 (643)
Q Consensus       365 ErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~----l~s~i~aLQ  440 (643)
                      .|+.+-.+...|.......-..-..-..++.+++..--|++.++..+.   ..|...|..+.+-|.+    |..+++.||
T Consensus       165 ~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~---~~Y~~~v~~~n~~~~~~~~~~~~~~~~~Q  241 (312)
T 3abh_A          165 AHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTK---EKYEKSLKELDQGTPQYMENMEQVFEQCQ  241 (312)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHTCTTCCSHHHHGGGTTTTSHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            888877666666543321110000001122222222223333333333   4456666666665554    445556665


Q ss_pred             --HHHH--HHHHHHHhhh
Q 006482          441 --EEKK--MMQSKLRKAS  454 (643)
Q Consensus       441 --EEKk--lLqskLRka~  454 (643)
                        ||.+  .|...|....
T Consensus       242 ~lee~Rl~~lk~~l~~~~  259 (312)
T 3abh_A          242 QFEEKRLRFFREVLLEVQ  259 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence              4433  3444455443

>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4

Probab=93.47  E-value=5.4  Score=37.92  Aligned_cols=103  Identities=14%  Similarity=0.186  Sum_probs=56.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHH
Q 006482          335 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSE  414 (643)
Q Consensus       335 ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E  414 (643)
                      .......+..+.+++.++..+...++..+..|..+-.++..|.........+.-.=-.++.+.+...-+....++.++  
T Consensus       115 ~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~~~~~~~~~~~s~~~~eK~~~k~~~~~~~~~~a~--  192 (305)
T 2efl_A          115 KQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSK--  192 (305)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHHHHHHHHHHHH--
Confidence            334455666777788888888888888888888888777777665543322110000011122222222233333333  


Q ss_pred             HHHHHHHhhhHHHh-hh----hhHHHHHHHH
Q 006482          415 ISSYKKKISSLEKE-RQ----DFQSTIEALQ  440 (643)
Q Consensus       415 ~~s~~~qlssleke-R~----~l~s~i~aLQ  440 (643)
                       ..|...|..+.+. |.    ++-.+++.||
T Consensus       193 -~~Y~~~v~~~n~~~~~~~~~~~~~~~~~lQ  222 (305)
T 2efl_A          193 -ADYSSILQKFNHEQHEYYHTHIPNIFQKIQ  222 (305)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             4566666666655 33    3445556555

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=93.46  E-value=3.3  Score=36.95  Aligned_cols=58  Identities=14%  Similarity=0.287  Sum_probs=46.2

Q ss_pred             hHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHH
Q 006482          389 GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM  446 (643)
Q Consensus       389 ~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklL  446 (643)
                      ..|++|-+|......|+..+..+...+...+.+...|..++..|+..+..|.+.-.-+
T Consensus        66 e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~  123 (129)
T 2fxo_A           66 DAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL  123 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4589999998888889999999988888888888888888877777777766554443

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=92.74  E-value=2.5  Score=36.33  Aligned_cols=91  Identities=21%  Similarity=0.326  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHH
Q 006482          336 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI  415 (643)
Q Consensus       336 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~  415 (643)
                      ..|..+|.+|..|+.+       .+......+.+...+..|..++..+-.||..|--|+..+       +.+++.+...+
T Consensus         2 ~~md~iKkKm~~lk~e-------~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~l-------E~eld~~~e~l   67 (101)
T 3u59_A            2 ASMEAIKKKMQMLKLD-------KENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGT-------EDEVEKYSESV   67 (101)
T ss_dssp             CTHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence            3477788888666654       233344444445555556666666666666666666544       55555555555


Q ss_pred             HHHHHHhhhHHHhhhhhHHHHHHHH
Q 006482          416 SSYKKKISSLEKERQDFQSTIEALQ  440 (643)
Q Consensus       416 ~s~~~qlsslekeR~~l~s~i~aLQ  440 (643)
                      ..+..++...+|.+......|.+|+
T Consensus        68 ~~a~~kLe~~ek~~~~AE~evasLn   92 (101)
T 3u59_A           68 KEAQEKLEQAEKKATDAEAEVASLN   92 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666665555555543

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=92.71  E-value=1.3  Score=41.95  Aligned_cols=82  Identities=16%  Similarity=0.218  Sum_probs=71.0

Q ss_pred             HHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhh
Q 006482          320 LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS  399 (643)
Q Consensus       320 La~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS  399 (643)
                      +...|....+.-+.....+.+|+.++.+|+.+++...-.++.+..|+.+.+++++.+.++.+.|-.|=-.|=+|.++-+.
T Consensus        59 ~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~  138 (152)
T 3a7p_A           59 IVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTE  138 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445566777788888889999999999999999999999999999999999999999999999999999999986654


Q ss_pred             hh
Q 006482          400 NE  401 (643)
Q Consensus       400 ~e  401 (643)
                      .+
T Consensus       139 qE  140 (152)
T 3a7p_A          139 KE  140 (152)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=92.43  E-value=1.5  Score=45.10  Aligned_cols=55  Identities=18%  Similarity=0.135  Sum_probs=40.5

Q ss_pred             ccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 006482          277 QHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYN  332 (643)
Q Consensus       277 ~~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yN  332 (643)
                      ...||++..+ ++..+++....+.++|..|...+.+.++.-+....+......++.
T Consensus       344 L~gyC~s~~~-~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e  398 (487)
T 3oja_A          344 LKEQYRTVID-QVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIE  398 (487)
T ss_dssp             HHHHTCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHhcChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhh
Confidence            3456665544 788888888899999999999988888777777666666555444

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=91.96  E-value=3.8  Score=35.44  Aligned_cols=58  Identities=26%  Similarity=0.320  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHH
Q 006482          336 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQ  407 (643)
Q Consensus       336 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlere  407 (643)
                      ..+.+|+.++..|+.+=..-...|..+..|+++              +++|+..||..+.+|.-.|-+.-++
T Consensus         4 ~~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~--------------l~~el~~le~E~~~L~~eE~~~w~e   61 (96)
T 3q8t_A            4 SDSEQLQRELKELALEEERLIQELEDVEKNRKV--------------VAENLEKVQAEAERLDQEEAQYQRE   61 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--------------HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            345667777777777666666666666666655              6677777777777776666654444

>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}

Probab=91.67  E-value=5.9  Score=39.33  Aligned_cols=126  Identities=14%  Similarity=0.190  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh-HHH-------------------HHHHHHHHHHHHHHHHHHHHhhhhHH
Q 006482          305 ALQRSLEASRALSESLAAENSSLTDSYNQQR-SVV-------------------NQLKSEMEKLQEEIKVQLVELESFRN  364 (643)
Q Consensus       305 aLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~-~~v-------------------~qLk~~mE~Lq~Ei~aQ~~~le~l~a  364 (643)
                      .|..+...-..-++.+|..+..+.+..+.+- ..+                   ..+...+++++.++..+...++..+.
T Consensus        85 tl~~aw~~l~~e~e~~a~~H~~la~~L~~~v~~~l~~~~~e~~~k~~~~~~ke~K~~~~~~~k~~k~~~~~~~~l~KaKk  164 (350)
T 3aco_A           85 TVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKK  164 (350)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTSCBCTTSSBHHHHHHHHHHHHHTSHHHHHHHHHHHTTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555666667777777666665432 111                   34455566666777777777777777


Q ss_pred             HHHHHhhhhhhHHHHHHH-------HHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhh----hH
Q 006482          365 EYANVRLECNAADERAKI-------LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD----FQ  433 (643)
Q Consensus       365 ErdaArle~~aA~ERak~-------LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~----l~  433 (643)
                      .|+.+-.+...|......       ...|+--++.|+.+.+..       ++.+.   ..|...|..+.+.|.+    |.
T Consensus       165 ~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~-------~~~a~---~~Y~~~v~~~n~~~~~~~~~~~  234 (350)
T 3aco_A          165 AHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQD-------VLKTK---EKYEKSLKELDQGTPQYMENME  234 (350)
T ss_dssp             THHHHHHHHHHHHHHHTTSSSSSSCCHHHHHHHHHHHHHHHHH-------HHHHH---HHHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHHHH-------HHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence            777765555544432210       023444444444444333       33332   3355555555555543    44


Q ss_pred             HHHHHHH
Q 006482          434 STIEALQ  440 (643)
Q Consensus       434 s~i~aLQ  440 (643)
                      .+++.||
T Consensus       235 ~~~~~~Q  241 (350)
T 3aco_A          235 QVFEQCQ  241 (350)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4555555

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=91.48  E-value=1.4  Score=38.05  Aligned_cols=71  Identities=14%  Similarity=0.273  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhh-hHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 006482          377 DERAKILASEVIGLEEKALRLRSNELKLERQLEN-SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL  450 (643)
Q Consensus       377 ~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~-l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskL  450 (643)
                      .++++.|-.+--.||.++..++..+-   ..+.. -..+|..++++|..+..|+..|+.-++.|+++-..++.||
T Consensus        22 IdKVR~LEqqN~~Le~~i~~l~~~~~---~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~KL   93 (93)
T 3s4r_A           22 IDKVRFLEQQNKILLAELEQLKGQGK---SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL   93 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            35555666666666666666654321   12223 3578889999999999999999999999999988888775

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=91.48  E-value=0.63  Score=42.09  Aligned_cols=69  Identities=19%  Similarity=0.308  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhh
Q 006482          344 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS  423 (643)
Q Consensus       344 ~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qls  423 (643)
                      .+++|+.||......++.|+.|....                 |..|+.+|.+|-.+----+++...+..|.+.++..+.
T Consensus        16 ~Ie~Lkreie~lk~ele~l~~E~q~~-----------------v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~   78 (120)
T 3i00_A           16 LIERLYREISGLKAQLENMKTESQRV-----------------VLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELD   78 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46666666666666788888887763                 3444444444433322222333444555555555555


Q ss_pred             hHHHhh
Q 006482          424 SLEKER  429 (643)
Q Consensus       424 slekeR  429 (643)
                      .+.+-+
T Consensus        79 ~l~~~~   84 (120)
T 3i00_A           79 ELRRQR   84 (120)
T ss_dssp             HHHTTC
T ss_pred             HHHHHh
Confidence            443333

>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}

Probab=91.15  E-value=11  Score=38.68  Aligned_cols=229  Identities=9%  Similarity=0.084  Sum_probs=106.4

Q ss_pred             HHHHHHHhhhHHHHHHHHhh-HHHHH-----------HHHHHHHHHHHHHHHH-HHhhhhHHHHHHHhhhhhhHHHHHHH
Q 006482          316 LSESLAAENSSLTDSYNQQR-SVVNQ-----------LKSEMEKLQEEIKVQL-VELESFRNEYANVRLECNAADERAKI  382 (643)
Q Consensus       316 l~esLa~ENsaLt~~yNqQ~-~~v~q-----------Lk~~mE~Lq~Ei~aQ~-~~le~l~aErdaArle~~aA~ERak~  382 (643)
                      =++.+|..+..+.+.++.+- ..+..           ....+++++.++.... ..|+..+..|+.+-.++..|..+...
T Consensus        80 ete~~a~~H~~lae~L~~~v~~~l~~~~ke~~~~rK~~~~~~~klqk~~~k~~~~~lekaKk~Y~~~cke~e~A~~k~~~  159 (406)
T 4dyl_A           80 QTEGLSRLLRQHAEDLNSGPLSKLSLLIRERQQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQAKRKYQE  159 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            35666777777777766552 23333           3334455666666667 67888888888877777777654433


Q ss_pred             HHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhh-----hhhHHHHHHHH--HHHH--HHHHHHHhh
Q 006482          383 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKER-----QDFQSTIEALQ--EEKK--MMQSKLRKA  453 (643)
Q Consensus       383 LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR-----~~l~s~i~aLQ--EEKk--lLqskLRka  453 (643)
                      .+..     ..+.+.+   -|+++-...+..-...|..+|..+.+..     .+|-.+++.||  ||.+  .|..-|+..
T Consensus       160 ~~k~-----ke~eK~~---~k~~k~~~~~~~a~neY~~~l~~~N~~~~~yy~~~lp~~~d~lQ~lEe~Ri~~lk~~L~~~  231 (406)
T 4dyl_A          160 ASKD-----KDRDKAK---DKYVRSLWKLFAHHNRYVLGVRAAQLHHQHHHQLLLPGLLRSLQDLHEEMACILKEILQEY  231 (406)
T ss_dssp             ------------CHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccC-----chHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2211     1111222   1222222233333356777777665544     34666677776  3432  333444443


Q ss_pred             hCCCCCcCCCCCcccc---cccccc------cccccccCccccCCCCCcccCCCCCCCCCCCCCCCCccccccccCcccc
Q 006482          454 SGSGKSIDFGKTAAST---VNASTS------TEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVN  524 (643)
Q Consensus       454 ~~~gk~~~~~k~~~~~---kDASTS------TdDLai~d~~~~sSn~e~~~s~s~~~~~~~~~P~~P~~G~~~l~~~~vs  524 (643)
                      +......    .+...   ...-.+      ..|+..+-..-.+....           -.+++|-|--+.-...-.|..
T Consensus       232 ~~~~~~~----~~~~~~~~~~l~~~i~~id~~~D~~~Fi~~~~tg~~~-----------P~~~~Fep~~~~d~~~l~~~~  296 (406)
T 4dyl_A          232 LEISSLV----QDEVVAIHREMAAAAARIQPEAEYQGFLRQYGSAPDV-----------PPCVTFDESLLEEGEPLEPGE  296 (406)
T ss_dssp             HHHHCSS----SHHHHHHHHHHHHHHHHCCGGGTTHHHHHHHCCCCCC-----------CCCCCCCTTCCC------TTC
T ss_pred             HHHHHHh----HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHcCCCCCC-----------CCCCccccCcccccccCCccc
Confidence            3322111    11000   000000      11110000000000000           011222222111111122334


Q ss_pred             chhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 006482          525 IPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLN  568 (643)
Q Consensus       525 Ip~DQlRmI~nInaLisEla~Ere~l~~aL~~es~~~s~Lk~lN  568 (643)
                      +-.|.++ .+.|-..|+.+..+-+++.+.+......+..|+..-
T Consensus       297 ~~~~e~~-~~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~  339 (406)
T 4dyl_A          297 LQLNELT-VESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQEL  339 (406)
T ss_dssp             CCCSTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555 678888899999988888888888777777666543

>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A

Probab=90.75  E-value=13  Score=36.38  Aligned_cols=145  Identities=19%  Similarity=0.214  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHh-hHHH-------------------HHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 006482          306 LQRSLEASRALSESLAAENSSLTDSYNQQ-RSVV-------------------NQLKSEMEKLQEEIKVQLVELESFRNE  365 (643)
Q Consensus       306 LqR~L~~s~~l~esLa~ENsaLt~~yNqQ-~~~v-------------------~qLk~~mE~Lq~Ei~aQ~~~le~l~aE  365 (643)
                      |..+...-..-++.+|..+..+.+.+..+ ...+                   ..+...+++++.++..+...++..+..
T Consensus        77 l~~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e~~~k~~~~~~ke~K~~~~~~~k~~k~~~~~~~~l~KaKk~  156 (337)
T 2x3v_A           77 LERAWGAMMTEADKVSELHQEVKNSLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKA  156 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCSSCSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566666666677777777777666432 1222                   334445677888888888899999988


Q ss_pred             HHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhH----HHHHHHH-
Q 006482          366 YANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQ----STIEALQ-  440 (643)
Q Consensus       366 rdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~----s~i~aLQ-  440 (643)
                      |..+-.+...|..+....-.+-..=..++.+++...-|++.++..+.   ..|...|..+.+-|....    .+++.|| 
T Consensus       157 Y~~~c~e~e~a~~~~~~~~~~~~~s~k~~eK~~~k~~k~~~~~~~a~---~~Y~~~v~~~n~~~~~~~~~~~~~~~~~Q~  233 (337)
T 2x3v_A          157 YHLACKEERLAMTREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQ---EKYEKVLEDVGKTTPQYMEGMEQVFEQCQQ  233 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHhccccCcccCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            88877776655433322110000001223333334444445555544   346666666666665544    4455555 


Q ss_pred             -HH-H-HHHHHHHHhh
Q 006482          441 -EE-K-KMMQSKLRKA  453 (643)
Q Consensus       441 -EE-K-klLqskLRka  453 (643)
                       || + ..|...|...
T Consensus       234 le~~Rl~~lk~~l~~~  249 (337)
T 2x3v_A          234 FEEKRLVFLKEVLLDI  249 (337)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence             33 3 3444455544

>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}

Probab=90.51  E-value=5.6  Score=38.23  Aligned_cols=134  Identities=14%  Similarity=0.195  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-hHHH------------------HHHHHHHHHHHHHHHHHHHHhhhhHH
Q 006482          304 FALQRSLEASRALSESLAAENSSLTDSYNQQ-RSVV------------------NQLKSEMEKLQEEIKVQLVELESFRN  364 (643)
Q Consensus       304 faLqR~L~~s~~l~esLa~ENsaLt~~yNqQ-~~~v------------------~qLk~~mE~Lq~Ei~aQ~~~le~l~a  364 (643)
                      ..|..+...-..-++.+|..+..+.+.+..+ ...+                  ..+...+++++..++.+...++..+.
T Consensus        63 gs~~~aw~~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~e~~~k~~~~~kerK~~~~~~~k~~k~~~~~~~~l~kaKk  142 (290)
T 3i2w_A           63 GTTEAAWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQKENYHHTLMQIKERKDLEDLFKKAQKPWAKLLAKVEKAKA  142 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCEETTEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555566666666677777777777666332 2222                  34455667788888888888888898


Q ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhh----HHHHHHHH
Q 006482          365 EYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDF----QSTIEALQ  440 (643)
Q Consensus       365 ErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l----~s~i~aLQ  440 (643)
                      .|+.+-.+...|.......-++-..-..++.+++...-|.+..++.+.   ..|...|..+.+.|.+.    -.+++.||
T Consensus       143 ~Y~~~c~e~~~a~~~~~~a~~~~~~s~k~~~K~~~k~~k~~~~~~~a~---~~Y~~~v~~~n~~~~~~~~~~p~~~~~~Q  219 (290)
T 3i2w_A          143 DYHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKTKDQVQKCR---EKYEQAIAEITKYNSVYIEDMTSVFEKCQ  219 (290)
T ss_dssp             HHHHHHHTTTSCC--------------------CTTSSTTTTHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcCCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            888877776666543322111111112333344444444444444444   55777777777766653    34556666

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=90.42  E-value=1.8  Score=35.96  Aligned_cols=75  Identities=23%  Similarity=0.350  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHH
Q 006482          339 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY  418 (643)
Q Consensus       339 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~  418 (643)
                      ..+|..|-.|+.+.       +......+.+...+..+..|+..+-.||..|.-|+..+       +.+++.+...+..+
T Consensus         2 ~~ikkKm~~lk~e~-------d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~l-------E~eld~~ee~l~~a   67 (81)
T 1ic2_A            2 DAIKKKMQMLKLDK-------ENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGT-------EDELDKYSESLKDA   67 (81)
T ss_dssp             CHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence            35666665555442       22333333333444444455555555555555554433       44444444444444


Q ss_pred             HHHhhhHHH
Q 006482          419 KKKISSLEK  427 (643)
Q Consensus       419 ~~qlsslek  427 (643)
                      .+++...+|
T Consensus        68 ~~kLeeaek   76 (81)
T 1ic2_A           68 QEKLELADK   76 (81)
T ss_dssp             HHHHHHHGG
T ss_pred             HHHHHHHHH
Confidence            444444433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=89.74  E-value=12  Score=38.33  Aligned_cols=51  Identities=8%  Similarity=-0.095  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHh
Q 006482          378 ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKE  428 (643)
Q Consensus       378 ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlssleke  428 (643)
                      .+.+.....-..+|....+.+...=+.+++.+.++.|..++++-+..+.+.
T Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (487)
T 3oja_A          414 AIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLA  464 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhh
Confidence            344444444444444444444444444444455555555555544444333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=88.58  E-value=11  Score=36.22  Aligned_cols=34  Identities=26%  Similarity=0.429  Sum_probs=16.1

Q ss_pred             hhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHH
Q 006482          410 NSQSEISSYKKKISSLEKERQDFQSTIEALQEEK  443 (643)
Q Consensus       410 ~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEK  443 (643)
                      +|..|+++.+.....+.-|+..|+.-|..|.-||
T Consensus       101 ~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~  134 (168)
T 3o0z_A          101 SLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEK  134 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444433

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=87.10  E-value=4  Score=34.71  Aligned_cols=81  Identities=19%  Similarity=0.335  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhh
Q 006482          345 MEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS  424 (643)
Q Consensus       345 mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlss  424 (643)
                      |+.|+++|..-....+.+..|+|+++....+-..+          .|        +|+.++..+   -.++-.+++-+-.
T Consensus         2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~K----------yE--------~E~~~R~~~---E~d~~~LrkdvD~   60 (86)
T 3swk_A            2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK----------LQ--------EEMLQREEA---ENTLQSFRQDVDN   60 (86)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH--------HHHHHHHHH---HHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----------HH--------HHHHHHHHH---HHHHHHHHhhHHH
Confidence            34555555555556666777777765443322111          12        222222222   2345556666777


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHH
Q 006482          425 LEKERQDFQSTIEALQEEKKMM  446 (643)
Q Consensus       425 lekeR~~l~s~i~aLQEEKklL  446 (643)
                      +.--|-+|+.-|+.|+||-.-|
T Consensus        61 a~l~r~dLE~kvesL~eEl~fL   82 (86)
T 3swk_A           61 ASLARLDLERKVESLQEEIAFL   82 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            7777888888888888887554

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=86.87  E-value=15  Score=31.85  Aligned_cols=62  Identities=13%  Similarity=0.102  Sum_probs=33.5

Q ss_pred             HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhH
Q 006482          315 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAA  376 (643)
Q Consensus       315 ~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA  376 (643)
                      +=++.|-.|.+...+++.+--..+.++....+++++||.+-.-.+..+..|.|.++..+..|
T Consensus         9 kKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea   70 (101)
T 3u1c_A            9 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS   70 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555555555555555555555555555555555555555554444443

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=85.37  E-value=17  Score=31.20  Aligned_cols=41  Identities=15%  Similarity=0.220  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 006482          312 ASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI  352 (643)
Q Consensus       312 ~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei  352 (643)
                      .+.+-++++-.+.-.+-++..+-...|..|+..+..++.++
T Consensus        20 ~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~el   60 (101)
T 3u59_A           20 NAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEV   60 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444555555555555555555543

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=84.80  E-value=0.52  Score=51.23  Aligned_cols=35  Identities=11%  Similarity=0.088  Sum_probs=9.4

Q ss_pred             hhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHH
Q 006482          361 SFRNEYANVRLECNAADERAKILASEVIGLEEKAL  395 (643)
Q Consensus       361 ~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l  395 (643)
                      .+.+|-..|+.+...+.|+|..|+.+.-..|+.+.
T Consensus       346 ~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~  380 (575)
T 2i1j_A          346 QMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKE  380 (575)
T ss_dssp             HHHHHHHHHHHHHHHHHHC----------------
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555555555555444444444433

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=84.20  E-value=32  Score=33.38  Aligned_cols=27  Identities=15%  Similarity=0.021  Sum_probs=10.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006482          286 NEDFAALEQHIEDLTQEKFALQRSLEA  312 (643)
Q Consensus       286 ~~~faaLqqhIeDLT~EKfaLqR~L~~  312 (643)
                      .++.+-.....+++.++-..|+..|.-
T Consensus         9 ~ee~~ywk~~~~~~~q~~~~le~El~E   35 (189)
T 2v71_A            9 KEETAYWKELSMKYKQSFQEARDELVE   35 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444433333333333344444433

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=84.13  E-value=15  Score=31.72  Aligned_cols=71  Identities=20%  Similarity=0.375  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006482          290 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE  360 (643)
Q Consensus       290 aaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le  360 (643)
                      +.|.+.|++|-.|+-.+-..|...++=.+.|-.+-...-+.||...-.+-++.+++.-+..++..-..-|+
T Consensus        21 ~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLd   91 (96)
T 3q8t_A           21 ERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLD   91 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556667777777777777777777777777777777788888877777777777666665544443333

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=83.99  E-value=16  Score=32.49  Aligned_cols=71  Identities=17%  Similarity=0.276  Sum_probs=41.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHH
Q 006482          334 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQ  407 (643)
Q Consensus       334 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlere  407 (643)
                      -...+.+|++.+..|+-||..+..-.+++..-..-+...+..+....+   .-|..||+.+.++|.+--+.-++
T Consensus        34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q---~~i~~lE~eL~~~r~e~~~ql~E  104 (129)
T 3tnu_B           34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDAR---NKLAELEEALQKAKQDMARLLRE  104 (129)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHH
Confidence            455677778888888887777766666665444444444443333322   33456777777776654443333

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=82.65  E-value=1.2  Score=48.45  Aligned_cols=27  Identities=22%  Similarity=0.370  Sum_probs=16.1

Q ss_pred             ccccccCCchhhHHHHHHHHHHHHHHH
Q 006482          277 QHGFYSTKHNEDFAALEQHIEDLTQEK  303 (643)
Q Consensus       277 ~~~F~s~~~~~~faaLqqhIeDLT~EK  303 (643)
                      .|.||......|-.-+||-=.-.-+||
T Consensus       287 ~H~ff~~~r~~d~~e~qqm~~~a~e~~  313 (575)
T 2i1j_A          287 NHELYMRRRKPDTIDVQQMKAQAREEK  313 (575)
T ss_dssp             HHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCCCcHHHHHHHHHHHHHH
Confidence            678887666666666665444333333

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=82.51  E-value=19  Score=31.95  Aligned_cols=59  Identities=27%  Similarity=0.290  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHH
Q 006482          337 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKAL  395 (643)
Q Consensus       337 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l  395 (643)
                      ..+.|+.++.+|+.++..--..+..+..++...+..+..|-.+-+.+..||-.|-.-++
T Consensus         6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLF   64 (97)
T 2eqb_B            6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLF   64 (97)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666666666655555555556666666555566666666666666665555444

>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A

Probab=82.40  E-value=15  Score=36.58  Aligned_cols=68  Identities=18%  Similarity=0.231  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh-HHH-------------------HHHHHHHHHHHHHHHHHHHHhhhhHH
Q 006482          305 ALQRSLEASRALSESLAAENSSLTDSYNQQR-SVV-------------------NQLKSEMEKLQEEIKVQLVELESFRN  364 (643)
Q Consensus       305 aLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~-~~v-------------------~qLk~~mE~Lq~Ei~aQ~~~le~l~a  364 (643)
                      .|..+...-..-++.+|..+..+.+++..+- ..+                   ..+...+++++..+..+...|+..+.
T Consensus        76 sl~~aw~~i~~e~e~~a~~H~~~a~~l~~~v~~~l~~~~k~~~~k~~~~~~ke~K~~~~~~~k~qk~~~~~~~~l~kaKk  155 (320)
T 3m3w_A           76 TLEKAWHAFFTAAERLSELHLEVREKLHGPDSERVRTWQRGAFHRPVLGGFRASRAAEDGFRKAQKPWLKRLKEVEASKK  155 (320)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555666777777777776665431 111                   23334556677777777777777777


Q ss_pred             HHHHHhhh
Q 006482          365 EYANVRLE  372 (643)
Q Consensus       365 ErdaArle  372 (643)
                      .|..+-.+
T Consensus       156 ~Y~~~c~e  163 (320)
T 3m3w_A          156 SYHTARKD  163 (320)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77664443

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=82.28  E-value=8.9  Score=35.12  Aligned_cols=9  Identities=11%  Similarity=0.220  Sum_probs=5.1

Q ss_pred             CCccccccC
Q 006482          260 DRGDIRRLG  268 (643)
Q Consensus       260 n~v~~~~~~  268 (643)
                      |+|.|.+.|
T Consensus         8 ~~V~V~I~G   16 (138)
T 3hnw_A            8 NTAEVILGG   16 (138)
T ss_dssp             -CEEEEETT
T ss_pred             CeeEEEECC
Confidence            566666666

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=81.33  E-value=11  Score=32.10  Aligned_cols=80  Identities=16%  Similarity=0.225  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHH
Q 006482          339 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY  418 (643)
Q Consensus       339 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~  418 (643)
                      ..|+.+++.+..+-..-.+.+.+++...+..+..+..-...-..+-+|+++|=.-+-.+-..-+-||.++++|..|+.=+
T Consensus         3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL   82 (86)
T 3swk_A            3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL   82 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555555566666555555555554444455566777776666666666677777777777776543

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=81.22  E-value=22  Score=32.05  Aligned_cols=100  Identities=13%  Similarity=0.199  Sum_probs=50.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHH
Q 006482          335 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSE  414 (643)
Q Consensus       335 ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E  414 (643)
                      .+.++.|+....+|+.++       +..++||+--.-.   -.+-...-.++|-.|-+++..-=+.-..|++....++  
T Consensus         5 ~~~~~~lq~~~~ql~~qL-------~k~~~~r~~Le~~---w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q--   72 (112)
T 1x79_B            5 RDQVKKLQLMLRQANDQL-------EKTMKDKQELEDF---IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAK--   72 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            455666666666666642       3333333332222   3344445677888888888755333333333333333  


Q ss_pred             HHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHH
Q 006482          415 ISSYKKKISSLEKERQDFQSTIEALQEEKKMMQ  447 (643)
Q Consensus       415 ~~s~~~qlsslekeR~~l~s~i~aLQEEKklLq  447 (643)
                       +....++..|..+|..+..-+..||.|---|.
T Consensus        73 -~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~  104 (112)
T 1x79_B           73 -RDVQEQMAVLMQSREQVSEELVRLQKDNDSLQ  104 (112)
T ss_dssp             -HHHHHHHHHHHHHHHHHHTC------------
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence             33456677788888888888888888765544

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=80.52  E-value=39  Score=31.88  Aligned_cols=86  Identities=15%  Similarity=0.185  Sum_probs=47.4

Q ss_pred             hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHH
Q 006482          359 LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA  438 (643)
Q Consensus       359 le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~a  438 (643)
                      +..+..++...+.....|-.+-+.+..||-.|-.-++.-   -   -+=+..++-+...+++++..|++.=.+-...|+.
T Consensus        60 ~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeE---A---N~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~  133 (154)
T 2ocy_A           60 VKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDE---A---NNMVADARKEKYAIEILNKRLTEQLREKDTLLDT  133 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444555555556666666665554422   1   1122233444455566666666666666778888


Q ss_pred             HHHHHHHHHHHH
Q 006482          439 LQEEKKMMQSKL  450 (643)
Q Consensus       439 LQEEKklLqskL  450 (643)
                      ||++-..|+.-+
T Consensus       134 lq~ql~~LK~v~  145 (154)
T 2ocy_A          134 LTLQLKNLKKVM  145 (154)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH
Confidence            888877776543

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=80.25  E-value=18  Score=32.31  Aligned_cols=71  Identities=18%  Similarity=0.235  Sum_probs=37.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHH
Q 006482          334 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQ  407 (643)
Q Consensus       334 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlere  407 (643)
                      -...+.+|+..+..|+-||+.+..-.+++..-..-+...+..+....   -.-|..||+.+.++|.+--+.-++
T Consensus        36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~---q~~i~~lE~eL~~~r~em~~ql~E  106 (131)
T 3tnu_A           36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQI---QEMIGSVEEQLAQLRCEMEQQNQE  106 (131)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44557777777777777777776666666444444444443333332   233455777777776654443333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	643
d2efka1	279	CDC42-interacting protein 4, CIP4 {Human (Homo sap	94.87
d2ap3a1	185	Hypothetical protein MW0975 (SA0943) {Staphylococc	89.25
d2efla1	288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	88.57
d2efla1	288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	87.09
d2ap3a1	185	Hypothetical protein MW0975 (SA0943) {Staphylococc	82.58
d1f5na1	300	Interferon-induced guanylate-binding protein 1 (GB	81.39

>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: CDC42-interacting protein 4, CIP4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.87  E-value=1.1  Score=39.15  Aligned_cols=111  Identities=14%  Similarity=0.226  Sum_probs=68.3

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHH
Q 006482          327 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER  406 (643)
Q Consensus       327 Lt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKler  406 (643)
                      |..-..++......++.++.+++.++......++..+..|+.+..++..|......+...+-.-..++.+++...-+.+.
T Consensus        93 l~~~~~~~~~~~k~~~~~~~~~~k~l~~~~~~~~k~k~~y~~~~~e~e~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~  172 (279)
T d2efka1          93 LTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQDINATKADVEKAKQQAHLRSH  172 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence            33444456666777888889999999999999999999999988888877777666554443334444444444444444


Q ss_pred             HHhhhHHHHHHHHHHhhhHHHhhh-----hhHHHHHHHH
Q 006482          407 QLENSQSEISSYKKKISSLEKERQ-----DFQSTIEALQ  440 (643)
Q Consensus       407 ele~l~~E~~s~~~qlsslekeR~-----~l~s~i~aLQ  440 (643)
                      .++.++.+   |..+|..+...+.     .|-.+++.||
T Consensus       173 ~~~~~~~~---y~~~l~~~n~~~~~~~~~~~p~~l~~lq  208 (279)
T d2efka1         173 MAEESKNE---YAAQLQRFNRDQAHFYFSQMPQIFDKLQ  208 (279)
T ss_dssp             HHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444433   3344443333322     2344555555

>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: MW0975(SA0943)-like
family: MW0975(SA0943)-like
domain: Hypothetical protein MW0975 (SA0943)
species: Staphylococcus aureus [TaxId: 1280]

Probab=89.25  E-value=3.8  Score=31.71  Aligned_cols=59  Identities=10%  Similarity=0.145  Sum_probs=30.7

Q ss_pred             HHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHH
Q 006482          390 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS  448 (643)
Q Consensus       390 LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqs  448 (643)
                      +.+.+..+....-.+...+..+...+..++.++..+.+....+...++.+.+..+.+..
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  179 (185)
T d2ap3a1         121 YAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVLNKVQK  179 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333344444455555666666666666666666666666555544443

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.57  E-value=7  Score=33.87  Aligned_cols=100  Identities=14%  Similarity=0.198  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHH
Q 006482          338 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISS  417 (643)
Q Consensus       338 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s  417 (643)
                      ...+..++.+++.++......++..+..|..+..++..|......+....-.=..++.+++...-+.+..++.++   ..
T Consensus       113 ~K~~~~~~~k~~k~~~~~~~~l~k~k~~Y~~~~~e~e~~~~~~~~~~~~~~~~~~~~~K~~~k~~~~~~~~~~a~---~~  189 (288)
T d2efla1         113 RKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSK---AD  189 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHH---HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHHHHHHHHHHHHH---HH
Confidence            344556666666677777777777777777766655555544433332221112233333333333334444433   33


Q ss_pred             HHHHhhhHHHhhhh-----hHHHHHHHH
Q 006482          418 YKKKISSLEKERQD-----FQSTIEALQ  440 (643)
Q Consensus       418 ~~~qlsslekeR~~-----l~s~i~aLQ  440 (643)
                      |...|..+.+.|.+     |-.+++.||
T Consensus       190 Y~~~v~~~n~~~~~~~~~~~~~~~~~~q  217 (288)
T d2efla1         190 YSSILQKFNHEQHEYYHTHIPNIFQKIQ  217 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555444433     456677776

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.09  E-value=8.7  Score=33.26  Aligned_cols=14  Identities=21%  Similarity=0.593  Sum_probs=6.5

Q ss_pred             hhhhHHHHHHHHHH
Q 006482          429 RQDFQSTIEALQEE  442 (643)
Q Consensus       429 R~~l~s~i~aLQEE  442 (643)
                      +.+.+..|.++...
T Consensus       187 ~~~Y~~~v~~~n~~  200 (288)
T d2efla1         187 KADYSSILQKFNHE  200 (288)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            44444555554433

>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: MW0975(SA0943)-like
family: MW0975(SA0943)-like
domain: Hypothetical protein MW0975 (SA0943)
species: Staphylococcus aureus [TaxId: 1280]

Probab=82.58  E-value=8.8  Score=29.53  Aligned_cols=160  Identities=9%  Similarity=0.145  Sum_probs=61.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 006482          287 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDS-YNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE  365 (643)
Q Consensus       287 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~-yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aE  365 (643)
                      .+...++..++.+-...-.+.....+-..+...+......+... ..........+...++.+...+......+.....+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (185)
T d2ap3a1           5 KEIKAYLKQVDKIKDDEEPIKTVGKKIAELDEKKKKLTEDVNSKDTAVRGKAVKDLIKNADDRLKEFEKEEDAIKKSEQD   84 (185)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666665555544444444444333333333322222111 11112223344444444444444444444444444


Q ss_pred             HHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHH
Q 006482          366 YANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKM  445 (643)
Q Consensus       366 rdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKkl  445 (643)
                      ...+...+..+...  .+..++-.+......++...-.+...+..+..++..+...+..+......+...+..|..+...
T Consensus        85 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~  162 (185)
T d2ap3a1          85 FKKAKSHVDNIDND--VKRKEVKQLDDVLKEKYKLHSDYAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQNYKK  162 (185)
T ss_dssp             HTTC-----CCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Confidence            44444433322211  1111111122222222222222333444444444445555544444444455555555444444


Q ss_pred             HHH
Q 006482          446 MQS  448 (643)
Q Consensus       446 Lqs  448 (643)
                      +..
T Consensus       163 ~~~  165 (185)
T d2ap3a1         163 LKE  165 (185)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.39  E-value=16  Score=31.81  Aligned_cols=20  Identities=10%  Similarity=0.182  Sum_probs=11.9

Q ss_pred             HHHHHhhhHHHHHHHHhhHH
Q 006482          318 ESLAAENSSLTDSYNQQRSV  337 (643)
Q Consensus       318 esLa~ENsaLt~~yNqQ~~~  337 (643)
                      ..+..+...+...|++....
T Consensus       151 ~~~~~~~~~~~~~~~~~~~k  170 (300)
T d1f5na1         151 RLFVQKLQDLKKKYYEEPRK  170 (300)
T ss_dssp             HHHHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHHHHHHHHhhhh
Confidence            34555556677777776543