Citrus Sinensis ID: 006498

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640---
MFSLNRSAFLNNPASISGSFPDKHRRILPTRVVVAGSSNRDKSNGSLLMATDESTATLKEMRDGYAEVVDPKSGVSGGVQDVYGEDTATEDQPVTPWSVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAYRTYR
ccccccccccccccccccccccccccccccEEEEccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccEEccccHHHHHccccccccccccHHHHHHcccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcHHccccccccccHHHHHHHHHHHcccccEEEEEccccccHHHHHHccccccccEEEEEcccccccccccccccccccHHHHHHHHHcccccccccccEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcccccccEEEEcccHHHHHHHHHHHHHHHHHHccccHHHHHccEEEEccccEEEcccccccccccccccccccccccHHHHHHHccccEEEEcccccccccHHHHHHHHHcccccEEEEcccccccccccHHHHHHHccccEEEEEcccccccEEccEEEcccccccEEEcccHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHccccccccccc
ccccccccccccccccccccccccccccccEEEEEEcccccccccEEEEEEccccccHHHHcccccEEEccccccccccccccccccccccccccccEEEcccccHHHHccccccHHHccHHHHHHcccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHcHHHHHHHHcccHHHHHHHcHHHHccccccEEEEHHHcccHHHHHcccccccccEEEEEccccEcccEccHHHHHHHHHHHHHHHHHHHcccHHHEEEEEEEcccccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHcccccEEEccccHHHHHHHHHHHHHHHHHccccccccEEEEcccHHHHHHHHHHHHHHHccccccHHHHHHHEEEEccccEEEcccccccHHHHHHccEcccccccHHHHHHHHcccEEEEcccccccccHHHHHHHHHHccccEEEEccccHHHccccHHHHHHccccccEEEEccccccEEEccEEEccEEccHHHcHHHHHHHHHHHcEccccHHHHHHHHHHHHHcccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccEccccccccHHHHHHHHcccccccccc
mfslnrsaflnnpasisgsfpdkhrrilptrvvvagssnrdksngsllmatdeSTATLKEMRDGyaevvdpksgvsggvqdvygedtatedqpvtpwsvsvasgysllrdphhnkglafsekernshylrgllpptviSQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELlpivytptvgeACQKygsiysrpqgvfislKDKGKVLEVLRNWPEKNIQVIVVTdgerilglgdlgchgmgipvgKLSLYTalggirpsaclpvtidvgtnnekllddefYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYgtthlvfnddiqGTASVVLAGLISAMKflggsladqRFLFLGAGEAGTGIAELIALEIskqtnmpleetrkKIWLVDSKGLIVSSRLESlqhfkkpwahehepVKELVDAVnaikptiligtsgqgrTFTKEVVEAMASLnekpiifslsnptsqsectaeeayTWSQgraifasgspfdpfeygdnvfvpgqannayifpglglglimsgairVHDDMLLAAAEALAGQVtqenfdkgllyppfknIRKISAHIAAEVAAKAYELGlatrlpppkdlVKYAescmyspayrtyr
mfslnrsaflnnpasisgsfpdkhrriLPTRvvvagssnrdksngsllmatdeSTATLKEMRDGYAevvdpksgvsgGVQDVYGEdtatedqpvtpWSVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVlrnwpekniqviVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEIskqtnmpleetrkkiwlvDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTiligtsgqgrTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGlatrlpppkdlvkyaescmyspayrtyr
MFSLNRSAFLNNPASISGSFPDKHRRILPTRVVVAGSSNRDKSNGSLLMATDESTATLKEMRDGYAEVVDPKSGVSGGVQDVYGEDTATEDQPVTPWSVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMllaaaealaGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAYRTYR
***********************************************************************************************PWSVSVASGYSLLR****************SHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSL********CTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYS*******
*********************************************************************************VYGEDTATEDQPVTPWSVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAYRTYR
MFSLNRSAFLNNPASISGSFPDKHRRILPTRVVVAGSSNRDKSNGSLLMATDESTATLKEMRDGYAEVVDPKSGVSGGVQDVYGEDTATEDQPVTPWSVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS************AYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAYRTYR
**************************ILPTRVVVAGSSNRDKSNGSLLMATDESTATLKEMRDGYAEVVDPKSGVSGGVQDVYGEDTATEDQPVTPWSVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAYR***
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MFSLNRSAFLNNPASISGSFPDKHRRILPTRVVVAGSSNRDKSNGSLLMATDESTATLKEMRDGYAEVVDPKSGVSGGVQDVYGEDTATEDQPVTPWSVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAYRTYR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query643 2.2.26 [Sep-21-2011]
Q9CA83646 NADP-dependent malic enzy yes no 0.993 0.989 0.770 0.0
P51615591 NADP-dependent malic enzy no no 0.914 0.994 0.809 0.0
P36444647 NADP-dependent malic enzy N/A no 0.898 0.893 0.823 0.0
P22178648 NADP-dependent malic enzy N/A no 0.992 0.984 0.754 0.0
P34105591 NADP-dependent malic enzy no no 0.914 0.994 0.818 0.0
P37223585 NADP-dependent malic enzy N/A no 0.897 0.986 0.798 0.0
P37222573 NADP-dependent malic enzy N/A no 0.886 0.994 0.805 0.0
P43279639 NADP-dependent malic enzy no no 0.880 0.885 0.791 0.0
Q9XGZ0588 NADP-dependent malic enzy no no 0.905 0.989 0.782 0.0
P12628589 NADP-dependent malic enzy N/A no 0.914 0.998 0.789 0.0
>sp|Q9CA83|MAOP4_ARATH NADP-dependent malic enzyme 4, chloroplastic OS=Arabidopsis thaliana GN=NADP-ME4 PE=1 SV=1 Back     alignment and function desciption
 Score = 1030 bits (2662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/650 (77%), Positives = 571/650 (87%), Gaps = 11/650 (1%)

Query: 1   MFSLNRSAFLNNPA--SISGSFPDKHRRILPT-----RVVVAGSSNRDKSNGSLLMATDE 53
           M SL  S FLN       S     +  R + T     RV  +  SN+D + GS+L+   E
Sbjct: 1   MISLTPSLFLNKTVVPGCSTRLSLRQPRTIITPPASLRVFSSLGSNQDPT-GSVLI---E 56

Query: 54  STATLKEMRDGYAEVVDPKSGVSGGVQDVYGEDTATEDQPVTPWSVSVASGYSLLRDPHH 113
           +TAT     +  A  + PKS VSGGVQDVYGED ATED P+TPWS+SVASGY+LLRDPHH
Sbjct: 57  TTATSSSSLETSAADIVPKSTVSGGVQDVYGEDAATEDMPITPWSLSVASGYTLLRDPHH 116

Query: 114 NKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQK 173
           NKGLAFS +ER++HYLRGLLPPTVISQ+LQVKK++H +RQYQVPLQKYMAMMDLQE N++
Sbjct: 117 NKGLAFSHRERDAHYLRGLLPPTVISQDLQVKKIMHTLRQYQVPLQKYMAMMDLQETNER 176

Query: 174 LFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKN 233
           LFYKLLID+VEELLP++YTPTVGEACQKYGSI+ RPQG+FISLK+KGK+ EVLRNWPEKN
Sbjct: 177 LFYKLLIDHVEELLPVIYTPTVGEACQKYGSIFLRPQGLFISLKEKGKIHEVLRNWPEKN 236

Query: 234 IQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLD 293
           IQVIVVTDGERILGLGDLGC GMGIPVGKLSLYTALGG+RPSACLPVTIDVGTNNEKLL+
Sbjct: 237 IQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPVTIDVGTNNEKLLN 296

Query: 294 DEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHL 353
           DEFYIGLRQ+RA G+EY+EL+HEFMTAVKQNYGE+++IQFEDFANHNAFDLL KYGTTHL
Sbjct: 297 DEFYIGLRQRRATGEEYSELMHEFMTAVKQNYGEKVVIQFEDFANHNAFDLLAKYGTTHL 356

Query: 354 VFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMP 413
           VFNDDIQGTASVVLAGLI+A++F+GGSL+D RFLFLGAGEAGTGIAELIALEISK++++P
Sbjct: 357 VFNDDIQGTASVVLAGLIAALRFVGGSLSDHRFLFLGAGEAGTGIAELIALEISKKSHIP 416

Query: 414 LEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQ 473
           LEE RK IWLVDSKGLIVSSR ES+QHFKKPWAH+HEP++ELVDAV AIKPT+LIGTSG 
Sbjct: 417 LEEARKNIWLVDSKGLIVSSRKESIQHFKKPWAHDHEPIRELVDAVKAIKPTVLIGTSGV 476

Query: 474 GRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYG 533
           G+TFT++VVE MA LNEKPII SLSNPTSQSECTAEEAYTWSQGRAIFASGSPF P EY 
Sbjct: 477 GQTFTQDVVETMAKLNEKPIILSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFAPVEYE 536

Query: 534 DNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPF 593
              FVPGQANNAYIFPG GLGLIMSG IRVHDDMLLAA+EALA ++ +E+++KG++YPPF
Sbjct: 537 GKTFVPGQANNAYIFPGFGLGLIMSGTIRVHDDMLLAASEALAEELMEEHYEKGMIYPPF 596

Query: 594 KNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAYRTYR 643
           +NIRKISA IAA+VAAKAYELGLATRLP PK+L + AES MYSP+YR+YR
Sbjct: 597 RNIRKISARIAAKVAAKAYELGLATRLPQPKELEQCAESSMYSPSYRSYR 646
The chloroplastic ME isoform decarboxylates malate shuttled from neighboring mesophyll cells. The CO(2) released is then refixed by ribulose-bisphosphate carboxylase. This pathway eliminates the photorespiratory loss of CO(2) that occurs in most plants.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 0
>sp|P51615|MAOX_VITVI NADP-dependent malic enzyme OS=Vitis vinifera PE=2 SV=1 Back     alignment and function description
>sp|P36444|MAOC_FLAPR NADP-dependent malic enzyme, chloroplastic OS=Flaveria pringlei GN=MODA PE=2 SV=1 Back     alignment and function description
>sp|P22178|MAOC_FLATR NADP-dependent malic enzyme, chloroplastic OS=Flaveria trinervia GN=MOD1 PE=2 SV=1 Back     alignment and function description
>sp|P34105|MAOX_POPTR NADP-dependent malic enzyme OS=Populus trichocarpa PE=2 SV=3 Back     alignment and function description
>sp|P37223|MAOX_MESCR NADP-dependent malic enzyme OS=Mesembryanthemum crystallinum GN=MOD1 PE=2 SV=1 Back     alignment and function description
>sp|P37222|MAOC_SOLLC NADP-dependent malic enzyme, chloroplastic (Fragment) OS=Solanum lycopersicum PE=2 SV=1 Back     alignment and function description
>sp|P43279|MAOC_ORYSJ NADP-dependent malic enzyme, chloroplastic OS=Oryza sativa subsp. japonica GN=ME6 PE=2 SV=2 Back     alignment and function description
>sp|Q9XGZ0|MAOP3_ARATH NADP-dependent malic enzyme 3 OS=Arabidopsis thaliana GN=NADP-ME3 PE=1 SV=1 Back     alignment and function description
>sp|P12628|MAOX_PHAVU NADP-dependent malic enzyme OS=Phaseolus vulgaris GN=ME1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query643
390533881645 NADP-dependent malic protein [Dimocarpus 0.998 0.995 0.862 0.0
255549832641 malic enzyme, putative [Ricinus communis 0.986 0.989 0.816 0.0
8118507641 NADP-dependent malic protein [Ricinus co 0.986 0.989 0.815 0.0
404313448640 cytosolic NADP-malic protein [Prunus arm 0.989 0.993 0.803 0.0
1561774640 malate dehydrogenase [Vitis vinifera] 0.956 0.960 0.813 0.0
225442481640 PREDICTED: NADP-dependent malic enzyme [ 0.956 0.960 0.811 0.0
339958975640 NADP-dependent malic enzyme [Hylocereus 0.986 0.990 0.787 0.0
118486015649 unknown [Populus trichocarpa] 0.990 0.981 0.801 0.0
315440252641 NADP-dependent malic enzyme [Pyrus pyrif 0.990 0.993 0.786 0.0
255546341591 malic enzyme, putative [Ricinus communis 0.914 0.994 0.828 0.0
>gi|390533881|gb|AFM08812.1| NADP-dependent malic protein [Dimocarpus longan] Back     alignment and taxonomy information
 Score = 1168 bits (3022), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/646 (86%), Positives = 599/646 (92%), Gaps = 4/646 (0%)

Query: 1   MFSLNRSAFLNNPASISGS---FPDKHRRILPTRVVVAGSSNRDKSNGSLLMATDESTAT 57
           MFSLNRS FLNN  SISG    F    RR LPT+VV   +SNR +SN S+LM     T  
Sbjct: 1   MFSLNRSCFLNN-TSISGRSSPFSHNQRRRLPTKVVALSTSNRVQSNVSVLMENHSGTTA 59

Query: 58  LKEMRDGYAEVVDPKSGVSGGVQDVYGEDTATEDQPVTPWSVSVASGYSLLRDPHHNKGL 117
           L+EMRDGYAEVVDPKS V+GGVQDVYGEDTATED PVTPWSVSVASGYSLLRDPHHNKGL
Sbjct: 60  LQEMRDGYAEVVDPKSAVTGGVQDVYGEDTATEDMPVTPWSVSVASGYSLLRDPHHNKGL 119

Query: 118 AFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYK 177
           AF++KERNSHYL GLLPPTV+SQELQVKKM+HNIR YQVPLQKYMAMMDLQERNQ+LFYK
Sbjct: 120 AFNDKERNSHYLCGLLPPTVVSQELQVKKMMHNIRNYQVPLQKYMAMMDLQERNQRLFYK 179

Query: 178 LLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVI 237
           LL+D+VEELLP+VYTPTVGEACQKYGSI++RPQG+FISLK+KGK+LEVLRNWPEKNIQVI
Sbjct: 180 LLMDHVEELLPVVYTPTVGEACQKYGSIFNRPQGLFISLKEKGKILEVLRNWPEKNIQVI 239

Query: 238 VVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFY 297
           VVTDGERILGLGDLGC GMGIPVGKLSLYTALGG+RPSACLP+TIDVGTNNE LL+DEFY
Sbjct: 240 VVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTNNETLLNDEFY 299

Query: 298 IGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFND 357
           IGLRQKRA GQEYAELLHEFMTAVKQNYGE+IL+QFEDFANHNAF+LLEKYGTTHLVFND
Sbjct: 300 IGLRQKRATGQEYAELLHEFMTAVKQNYGEKILVQFEDFANHNAFNLLEKYGTTHLVFND 359

Query: 358 DIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEET 417
           DIQGTASVVLAGLISAMKF+GGSLADQ+FLFLGAGEAGTGIAELIALEISKQTNMP+EE 
Sbjct: 360 DIQGTASVVLAGLISAMKFVGGSLADQKFLFLGAGEAGTGIAELIALEISKQTNMPVEEA 419

Query: 418 RKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTF 477
           RKK+WLVDSKGLIVSSR ESLQHFKKPWAH+HEPV ELVDAVN IKPTILIGTSG+G+TF
Sbjct: 420 RKKVWLVDSKGLIVSSRSESLQHFKKPWAHDHEPVTELVDAVNQIKPTILIGTSGKGKTF 479

Query: 478 TKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVF 537
           TKEVVEAMA+LNEKPII +LSNPTSQSECTAEEAY W+QGRAIFASGSPFDP EY    +
Sbjct: 480 TKEVVEAMAALNEKPIILALSNPTSQSECTAEEAYNWTQGRAIFASGSPFDPVEYEGKAY 539

Query: 538 VPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKNIR 597
           VPGQANNAYIFPG GLGLIMSG IRVHDDMLLAA+EALA QVT ENF+KGL+YPPFK+IR
Sbjct: 540 VPGQANNAYIFPGFGLGLIMSGTIRVHDDMLLAASEALAEQVTPENFEKGLIYPPFKSIR 599

Query: 598 KISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAYRTYR 643
           KISAHIAA+VAAK+YELGLATRLP PKDLVKYAESCMYSPAYRTYR
Sbjct: 600 KISAHIAAKVAAKSYELGLATRLPQPKDLVKYAESCMYSPAYRTYR 645

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255549832|ref|XP_002515967.1| malic enzyme, putative [Ricinus communis] gi|223544872|gb|EEF46387.1| malic enzyme, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|8118507|gb|AAF73006.1|AF262997_1 NADP-dependent malic protein [Ricinus communis] Back     alignment and taxonomy information
>gi|404313448|gb|AFR54473.1| cytosolic NADP-malic protein [Prunus armeniaca] Back     alignment and taxonomy information
>gi|1561774|gb|AAB08874.1| malate dehydrogenase [Vitis vinifera] Back     alignment and taxonomy information
>gi|225442481|ref|XP_002283814.1| PREDICTED: NADP-dependent malic enzyme [Vitis vinifera] gi|297743201|emb|CBI36068.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|339958975|gb|AEK25136.1| NADP-dependent malic enzyme [Hylocereus undatus] Back     alignment and taxonomy information
>gi|118486015|gb|ABK94851.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|315440252|gb|ADU20198.1| NADP-dependent malic enzyme [Pyrus pyrifolia] Back     alignment and taxonomy information
>gi|255546341|ref|XP_002514230.1| malic enzyme, putative [Ricinus communis] gi|223546686|gb|EEF48184.1| malic enzyme, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query643
TAIR|locus:2017854646 NADP-ME4 "NADP-malic enzyme 4" 0.993 0.989 0.761 1e-265
TAIR|locus:2180547588 NADP-ME3 "NADP-malic enzyme 3" 0.905 0.989 0.768 1.2e-248
TAIR|locus:2181980588 NADP-ME2 "NADP-malic enzyme 2" 0.897 0.981 0.764 1.6e-246
TAIR|locus:2052045581 NADP-ME1 "NADP-malic enzyme 1" 0.892 0.987 0.773 3.7e-245
UNIPROTKB|F1P0Y6576 ME1 "Malic enzyme" [Gallus gal 0.847 0.946 0.516 6e-151
RGD|3074572 Me1 "malic enzyme 1, NADP(+)-d 0.830 0.933 0.521 7.9e-149
UNIPROTKB|P13697572 Me1 "NADP-dependent malic enzy 0.830 0.933 0.521 7.9e-149
ZFIN|ZDB-GENE-041111-294603 me3 "malic enzyme 3, NADP(+)-d 0.835 0.890 0.509 7.9e-149
MGI|MGI:97043572 Me1 "malic enzyme 1, NADP(+)-d 0.830 0.933 0.523 1.6e-148
ZFIN|ZDB-GENE-040801-147581 me2 "malic enzyme 2, NAD(+)-de 0.846 0.936 0.502 4.3e-148
TAIR|locus:2017854 NADP-ME4 "NADP-malic enzyme 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2556 (904.8 bits), Expect = 1.0e-265, P = 1.0e-265
 Identities = 495/650 (76%), Positives = 562/650 (86%)

Query:     1 MFSLNRSAFLNN---PA-SISGSFPDKHRRILPT---RVVVAGSSNRDKSNGSLLMATDE 53
             M SL  S FLN    P  S   S       I P    RV  +  SN+D + GS+L+   E
Sbjct:     1 MISLTPSLFLNKTVVPGCSTRLSLRQPRTIITPPASLRVFSSLGSNQDPT-GSVLI---E 56

Query:    54 STATLKEMRDGYAEVVDPKSGVSGGVQDVYGEDTATEDQPVTPWSVSVASGYSLLRDPHH 113
             +TAT     +  A  + PKS VSGGVQDVYGED ATED P+TPWS+SVASGY+LLRDPHH
Sbjct:    57 TTATSSSSLETSAADIVPKSTVSGGVQDVYGEDAATEDMPITPWSLSVASGYTLLRDPHH 116

Query:   114 NKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQK 173
             NKGLAFS +ER++HYLRGLLPPTVISQ+LQVKK++H +RQYQVPLQKYMAMMDLQE N++
Sbjct:   117 NKGLAFSHRERDAHYLRGLLPPTVISQDLQVKKIMHTLRQYQVPLQKYMAMMDLQETNER 176

Query:   174 LFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKN 233
             LFYKLLID+VEELLP++YTPTVGEACQKYGSI+ RPQG+FISLK+KGK+ EVLRNWPEKN
Sbjct:   177 LFYKLLIDHVEELLPVIYTPTVGEACQKYGSIFLRPQGLFISLKEKGKIHEVLRNWPEKN 236

Query:   234 IQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLD 293
             IQVIVVTDGERILGLGDLGC GMGIPVGKLSLYTALGG+RPSACLPVTIDVGTNNEKLL+
Sbjct:   237 IQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPVTIDVGTNNEKLLN 296

Query:   294 DEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHL 353
             DEFYIGLRQ+RA G+EY+EL+HEFMTAVKQNYGE+++IQFEDFANHNAFDLL KYGTTHL
Sbjct:   297 DEFYIGLRQRRATGEEYSELMHEFMTAVKQNYGEKVVIQFEDFANHNAFDLLAKYGTTHL 356

Query:   354 VFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMP 413
             VFNDDIQGTASVVLAGLI+A++F+GGSL+D RFLFLGAGEAGTGIAELIALEISK++++P
Sbjct:   357 VFNDDIQGTASVVLAGLIAALRFVGGSLSDHRFLFLGAGEAGTGIAELIALEISKKSHIP 416

Query:   414 LEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQ 473
             LEE RK IWLVDSKGLIVSSR ES+QHFKKPWAH+HEP++ELVDAV AIKPT+LIGTSG 
Sbjct:   417 LEEARKNIWLVDSKGLIVSSRKESIQHFKKPWAHDHEPIRELVDAVKAIKPTVLIGTSGV 476

Query:   474 GRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYG 533
             G+TFT++VVE MA LNEKPII SLSNPTSQSECTAEEAYTWSQGRAIFASGSPF P EY 
Sbjct:   477 GQTFTQDVVETMAKLNEKPIILSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFAPVEYE 536

Query:   534 DNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMXXXXXXXXXGQVTQENFDKGLLYPPF 593
                FVPGQANNAYIFPG GLGLIMSG IRVHDDM          ++ +E+++KG++YPPF
Sbjct:   537 GKTFVPGQANNAYIFPGFGLGLIMSGTIRVHDDMLLAASEALAEELMEEHYEKGMIYPPF 596

Query:   594 KNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAYRTYR 643
             +NIRKISA IAA+VAAKAYELGLATRLP PK+L + AES MYSP+YR+YR
Sbjct:   597 RNIRKISARIAAKVAAKAYELGLATRLPQPKELEQCAESSMYSPSYRSYR 646
GO:0000166 "nucleotide binding" evidence=IEA
GO:0004470 "malic enzyme activity" evidence=IEA;ISS
GO:0006108 "malate metabolic process" evidence=IEA;ISS;IDA;TAS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA
GO:0016619 "malate dehydrogenase (oxaloacetate-decarboxylating) activity" evidence=IEA
GO:0016652 "oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor" evidence=ISS
GO:0046872 "metal ion binding" evidence=IEA
GO:0051287 "NAD binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0004473 "malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity" evidence=IDA
GO:0006633 "fatty acid biosynthetic process" evidence=TAS
GO:0042803 "protein homodimerization activity" evidence=IDA
GO:0051289 "protein homotetramerization" evidence=IDA
GO:0008270 "zinc ion binding" evidence=IDA
GO:0050897 "cobalt ion binding" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0007010 "cytoskeleton organization" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
TAIR|locus:2180547 NADP-ME3 "NADP-malic enzyme 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2181980 NADP-ME2 "NADP-malic enzyme 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2052045 NADP-ME1 "NADP-malic enzyme 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1P0Y6 ME1 "Malic enzyme" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|3074 Me1 "malic enzyme 1, NADP(+)-dependent, cytosolic" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P13697 Me1 "NADP-dependent malic enzyme" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041111-294 me3 "malic enzyme 3, NADP(+)-dependent, mitochondrial" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:97043 Me1 "malic enzyme 1, NADP(+)-dependent, cytosolic" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040801-147 me2 "malic enzyme 2, NAD(+)-dependent, mitochondrial" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A4SKE9MAO1_AERS41, ., 1, ., 1, ., 3, 80.44990.83510.9521yesno
O82191MAOP1_ARATH1, ., 1, ., 1, ., 4, 00.78910.89260.9879nono
Q8ZPE8MAO1_SALTY1, ., 1, ., 1, ., 3, 80.43500.82890.9433yesno
P06801MAOX_MOUSE1, ., 1, ., 1, ., 4, 00.52880.83040.9335yesno
B5QTN6MAO1_SALEP1, ., 1, ., 1, ., 3, 80.43320.82890.9433yesno
P28227MAOX_ANAPL1, ., 1, ., 1, ., 4, 00.52770.83510.9640N/Ano
P13697MAOX_RAT1, ., 1, ., 1, ., 4, 00.52700.83040.9335yesno
Q29558MAOX_PIG1, ., 1, ., 1, ., 4, 00.52700.83040.9587yesno
B5RAB4MAO1_SALG21, ., 1, ., 1, ., 3, 80.43320.82890.9433yesno
P34105MAOX_POPTR1, ., 1, ., 1, ., 4, 00.81830.91440.9949nono
Q9XGZ0MAOP3_ARATH1, ., 1, ., 1, ., 4, 00.78250.90510.9897nono
B5FHJ6MAO1_SALDC1, ., 1, ., 1, ., 3, 80.43320.82890.9433yesno
Q47WB0MAO1_COLP31, ., 1, ., 1, ., 3, 80.44740.83200.9519yesno
B2U1M1MAO1_SHIB31, ., 1, ., 1, ., 3, 80.42900.83510.9504yesno
A9MYU8MAO1_SALPB1, ., 1, ., 1, ., 3, 80.43500.82890.9433yesno
Q9LYG3MAOP2_ARATH1, ., 1, ., 1, ., 4, 00.77810.89730.9812nono
P22178MAOC_FLATR1, ., 1, ., 1, ., 4, 00.75490.99220.9845N/Ano
P43279MAOC_ORYSJ1, ., 1, ., 1, ., 4, 00.79150.88020.8857nono
A7MN74MAO1_CROS81, ., 1, ., 1, ., 3, 80.43450.83670.9505yesno
B4TW15MAO1_SALSV1, ., 1, ., 1, ., 3, 80.43500.82890.9433yesno
Q4FRX3MAO1_PSYA21, ., 1, ., 1, ., 3, 80.44360.83350.9571yesno
Q57P88MAO1_SALCH1, ., 1, ., 1, ., 3, 80.43500.82890.9433yesno
A0KHR8MAO1_AERHH1, ., 1, ., 1, ., 3, 80.44340.83670.9539yesno
Q83ML6MAO1_SHIFL1, ., 1, ., 1, ., 3, 80.42720.83510.9504yesno
P37222MAOC_SOLLC1, ., 1, ., 1, ., 4, 00.80590.88640.9947N/Ano
P37223MAOX_MESCR1, ., 1, ., 1, ., 4, 00.79890.89730.9863N/Ano
P51615MAOX_VITVI1, ., 1, ., 1, ., 4, 00.80980.91440.9949nono
P40927MAOX_COLLI1, ., 1, ., 1, ., 4, 00.52590.83510.9640N/Ano
Q6TU48MAOX_DICDI1, ., 1, ., 1, ., 4, 00.46720.82420.9742yesno
B5Z1T9MAO1_ECO5E1, ., 1, ., 1, ., 3, 80.42720.83510.9504yesno
Q9CA83MAOP4_ARATH1, ., 1, ., 1, ., 4, 00.77070.99370.9891yesno
B4T5V6MAO1_SALNS1, ., 1, ., 1, ., 3, 80.43320.82890.9433yesno
Q320R8MAO1_SHIBS1, ., 1, ., 1, ., 3, 80.42900.83510.9504yesno
P48163MAOX_HUMAN1, ., 1, ., 1, ., 4, 00.52320.83040.9335yesno
P12628MAOX_PHAVU1, ., 1, ., 1, ., 4, 00.78980.91440.9983N/Ano
P16243MAOC_MAIZE1, ., 1, ., 1, ., 4, 00.79120.85690.8663N/Ano
B4TII8MAO1_SALHS1, ., 1, ., 1, ., 3, 80.43500.82890.9433yesno
Q6FFL8MAO1_ACIAD1, ., 1, ., 1, ., 3, 80.43630.83510.9487yesno
Q5PHY7MAO1_SALPA1, ., 1, ., 1, ., 3, 80.43500.82890.9433yesno
B5F5W5MAO1_SALA41, ., 1, ., 1, ., 3, 80.43500.82890.9433yesno
P36444MAOC_FLAPR1, ., 1, ., 1, ., 4, 00.82350.89890.8933N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.1.10.983
4th Layer1.1.1.400.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query643
PLN03129581 PLN03129, PLN03129, NADP-dependent malic enzyme; P 0.0
PRK13529563 PRK13529, PRK13529, malate dehydrogenase; Provisio 0.0
PTZ00317559 PTZ00317, PTZ00317, NADP-dependent malic enzyme; P 0.0
cd05312279 cd05312, NAD_bind_1_malic_enz, NAD(P) binding doma 1e-153
pfam03949255 pfam03949, Malic_M, Malic enzyme, NAD binding doma 1e-124
COG0281432 COG0281, SfcA, Malic enzyme [Energy production and 1e-121
pfam00390182 pfam00390, malic, Malic enzyme, N-terminal domain 1e-100
smart00919231 smart00919, Malic_M, Malic enzyme, NAD binding dom 2e-96
cd00762254 cd00762, NAD_bind_malic_enz, NAD(P) binding domain 4e-88
cd05311226 cd05311, NAD_bind_2_malic_enz, NAD(P) binding doma 7e-32
PRK12862 763 PRK12862, PRK12862, malic enzyme; Reviewed 5e-24
PRK07232 752 PRK07232, PRK07232, bifunctional malic enzyme oxid 5e-21
PRK12861 764 PRK12861, PRK12861, malic enzyme; Reviewed 5e-20
cd0519186 cd05191, NAD_bind_amino_acid_DH, NAD(P) binding do 8e-08
>gnl|CDD|215594 PLN03129, PLN03129, NADP-dependent malic enzyme; Provisional Back     alignment and domain information 
 Score = 1126 bits (2914), Expect = 0.0
 Identities = 419/574 (72%), Positives = 487/574 (84%), Gaps = 1/574 (0%)

Query: 70  DPKSGVSGGVQDVYGEDTATEDQPVTPWSVSVASGYSLLRDPHHNKGLAFSEKERNSHYL 129
             +   +GGV+DVYGED ATE+QPVTPW V VASGY LLRDP +NKGLAF+E ER+   L
Sbjct: 9   RRRRSAAGGVEDVYGEDAATEEQPVTPW-VRVASGYDLLRDPRYNKGLAFTETERDRLGL 67

Query: 130 RGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPI 189
           RGLLPP V+SQELQVK+ + N+R  + PL KY A+MDLQERN++LFY++LIDN+EELLPI
Sbjct: 68  RGLLPPAVLSQELQVKRFMENLRALESPLAKYRALMDLQERNERLFYRVLIDNIEELLPI 127

Query: 190 VYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLG 249
           VYTPTVGEACQKYGS++ RP+G++ISLKDKG+VL +L+NWPE+++QVIVVTDGERILGLG
Sbjct: 128 VYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVTDGERILGLG 187

Query: 250 DLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQE 309
           DLG  GMGIPVGKL LYTA GGIRPSA LPV IDVGTNNEKLL+D FYIGLRQ R  G+E
Sbjct: 188 DLGVQGMGIPVGKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEE 247

Query: 310 YAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAG 369
           Y EL+ EFM AVKQ +G ++L+QFEDFAN NAF LL++Y TTHL FNDDIQGTA+V LAG
Sbjct: 248 YDELVDEFMEAVKQRWGPKVLVQFEDFANKNAFRLLQRYRTTHLCFNDDIQGTAAVALAG 307

Query: 370 LISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429
           L++A++  GG LADQR LF GAGEAGTGIAELIAL +S+QT +  EE RK+IWLVDSKGL
Sbjct: 308 LLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGL 367

Query: 430 IVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLN 489
           +  SR +SLQ FKKP+AH+HEP   L++AV AIKPT+LIG SG G TFTKEV+EAMASLN
Sbjct: 368 VTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLN 427

Query: 490 EKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFP 549
           E+PIIF+LSNPTS++ECTAEEAYTW+ GRAIFASGSPFDP EY    F PGQANNAYIFP
Sbjct: 428 ERPIIFALSNPTSKAECTAEEAYTWTGGRAIFASGSPFDPVEYNGKTFHPGQANNAYIFP 487

Query: 550 GLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAA 609
           G+GLG ++SGAIRV DDMLLAAAEALA QVT+E   KG +YPPF  IR ISAH+AA VAA
Sbjct: 488 GIGLGALLSGAIRVTDDMLLAAAEALAAQVTEEELAKGAIYPPFSRIRDISAHVAAAVAA 547

Query: 610 KAYELGLATRLPPPKDLVKYAESCMYSPAYRTYR 643
           KAYE GLATRLP P+DLV+YAESCMYSP YR YR
Sbjct: 548 KAYEEGLATRLPRPEDLVEYAESCMYSPVYRPYR 581

Length = 581
>gnl|CDD|237414 PRK13529, PRK13529, malate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|240357 PTZ00317, PTZ00317, NADP-dependent malic enzyme; Provisional Back     alignment and domain information
>gnl|CDD|133454 cd05312, NAD_bind_1_malic_enz, NAD(P) binding domain of malic enzyme (ME), subgroup 1 Back     alignment and domain information
>gnl|CDD|217809 pfam03949, Malic_M, Malic enzyme, NAD binding domain Back     alignment and domain information
>gnl|CDD|223358 COG0281, SfcA, Malic enzyme [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|215894 pfam00390, malic, Malic enzyme, N-terminal domain Back     alignment and domain information
>gnl|CDD|214912 smart00919, Malic_M, Malic enzyme, NAD binding domain Back     alignment and domain information
>gnl|CDD|133442 cd00762, NAD_bind_malic_enz, NAD(P) binding domain of malic enzyme Back     alignment and domain information
>gnl|CDD|133453 cd05311, NAD_bind_2_malic_enz, NAD(P) binding domain of malic enzyme (ME), subgroup 2 Back     alignment and domain information
>gnl|CDD|183799 PRK12862, PRK12862, malic enzyme; Reviewed Back     alignment and domain information
>gnl|CDD|235976 PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed Back     alignment and domain information
>gnl|CDD|183798 PRK12861, PRK12861, malic enzyme; Reviewed Back     alignment and domain information
>gnl|CDD|133449 cd05191, NAD_bind_amino_acid_DH, NAD(P) binding domain of amino acid dehydrogenase-like proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 643
KOG1257582 consensus NADP+-dependent malic enzyme [Energy pro 100.0
PRK13529563 malate dehydrogenase; Provisional 100.0
PLN03129581 NADP-dependent malic enzyme; Provisional 100.0
PTZ00317559 NADP-dependent malic enzyme; Provisional 100.0
COG0281432 SfcA Malic enzyme [Energy production and conversio 100.0
PRK12861 764 malic enzyme; Reviewed 100.0
PRK12862 763 malic enzyme; Reviewed 100.0
PRK07232 752 bifunctional malic enzyme oxidoreductase/phosphotr 100.0
cd05312279 NAD_bind_1_malic_enz NAD(P) binding domain of mali 100.0
PF03949255 Malic_M: Malic enzyme, NAD binding domain; InterPr 100.0
cd00762254 NAD_bind_malic_enz NAD(P) binding domain of malic 100.0
PF00390182 malic: Malic enzyme, N-terminal domain; InterPro: 100.0
cd05311226 NAD_bind_2_malic_enz NAD(P) binding domain of mali 100.0
cd0519186 NAD_bind_amino_acid_DH NAD(P) binding domain of am 98.84
PRK05476425 S-adenosyl-L-homocysteine hydrolase; Provisional 97.67
PLN02477410 glutamate dehydrogenase 97.23
TIGR01035417 hemA glutamyl-tRNA reductase. This enzyme, togethe 97.23
PRK09414445 glutamate dehydrogenase; Provisional 97.19
cd05213311 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain 97.04
cd00401413 AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado 97.02
TIGR00936406 ahcY adenosylhomocysteinase. This enzyme hydrolyze 96.91
PRK00045423 hemA glutamyl-tRNA reductase; Reviewed 96.9
cd05211217 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of 96.83
PRK14031444 glutamate dehydrogenase; Provisional 96.82
PRK14982340 acyl-ACP reductase; Provisional 96.8
cd01080168 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of 96.69
PLN02494477 adenosylhomocysteinase 96.65
TIGR02853287 spore_dpaA dipicolinic acid synthetase, A subunit. 96.58
PF01488135 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; 96.56
PTZ00079454 NADP-specific glutamate dehydrogenase; Provisional 96.47
PRK14030445 glutamate dehydrogenase; Provisional 96.43
PLN00203519 glutamyl-tRNA reductase 96.14
PRK08306296 dipicolinate synthase subunit A; Reviewed 96.1
cd01075200 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l 96.1
COG0373414 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] 96.04
cd05313254 NAD_bind_2_Glu_DH NAD(P) binding domain of glutama 95.92
PRK14192283 bifunctional 5,10-methylene-tetrahydrofolate dehyd 95.89
PTZ00075476 Adenosylhomocysteinase; Provisional 95.77
PRK13940414 glutamyl-tRNA reductase; Provisional 95.77
PRK08293287 3-hydroxybutyryl-CoA dehydrogenase; Validated 95.74
PLN00106323 malate dehydrogenase 95.69
cd01076227 NAD_bind_1_Glu_DH NAD(P) binding domain of glutama 95.69
PRK14175286 bifunctional 5,10-methylene-tetrahydrofolate dehyd 95.5
PRK12549284 shikimate 5-dehydrogenase; Reviewed 95.49
cd01078194 NAD_bind_H4MPT_DH NADP binding domain of methylene 95.48
cd01065155 NAD_bind_Shikimate_DH NAD(P) binding domain of Shi 95.23
TIGR00518370 alaDH alanine dehydrogenase. The family of known L 95.16
PRK00676338 hemA glutamyl-tRNA reductase; Validated 94.63
TIGR01809282 Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO 94.56
PF0380796 F420_oxidored: NADP oxidoreductase coenzyme F420-d 94.49
PF00670162 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase 94.19
PF00208244 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val 93.75
PRK10792285 bifunctional 5,10-methylene-tetrahydrofolate dehyd 93.63
cd05296 419 GH4_P_beta_glucosidase Glycoside Hydrolases Family 93.62
TIGR02356202 adenyl_thiF thiazole biosynthesis adenylyltransfer 93.51
PRK09424509 pntA NAD(P) transhydrogenase subunit alpha; Provis 93.27
PRK05086312 malate dehydrogenase; Provisional 93.25
PRK06130311 3-hydroxybutyryl-CoA dehydrogenase; Validated 93.22
cd00650263 LDH_MDH_like NAD-dependent, lactate dehydrogenase- 93.19
PRK06129308 3-hydroxyacyl-CoA dehydrogenase; Validated 93.14
PF00056141 Ldh_1_N: lactate/malate dehydrogenase, NAD binding 93.04
PRK08605332 D-lactate dehydrogenase; Validated 93.0
TIGR02354200 thiF_fam2 thiamine biosynthesis protein ThiF, fami 92.98
cd05212140 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom 92.93
PRK08328231 hypothetical protein; Provisional 92.92
PTZ00325321 malate dehydrogenase; Provisional 92.75
PRK14191285 bifunctional 5,10-methylene-tetrahydrofolate dehyd 92.71
PRK07531 495 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe 92.59
cd05291306 HicDH_like L-2-hydroxyisocapronate dehydrogenases 92.54
PRK12749288 quinate/shikimate dehydrogenase; Reviewed 92.26
PRK00066315 ldh L-lactate dehydrogenase; Reviewed 92.07
PRK06035291 3-hydroxyacyl-CoA dehydrogenase; Validated 92.02
PRK08223287 hypothetical protein; Validated 91.98
PLN02928347 oxidoreductase family protein 91.89
PRK00257381 erythronate-4-phosphate dehydrogenase; Validated 91.72
cd05197 425 GH4_glycoside_hydrolases Glycoside Hydrases Family 91.55
PRK05600370 thiamine biosynthesis protein ThiF; Validated 91.42
PRK09260288 3-hydroxybutyryl-CoA dehydrogenase; Validated 91.34
PRK14027283 quinate/shikimate dehydrogenase; Provisional 91.26
cd05297 423 GH4_alpha_glucosidase_galactosidase Glycoside Hydr 91.25
cd01079197 NAD_bind_m-THF_DH NAD binding domain of methylene- 91.06
PRK08762376 molybdopterin biosynthesis protein MoeB; Validated 90.93
cd01487174 E1_ThiF_like E1_ThiF_like. Member of superfamily o 90.9
PRK15076 431 alpha-galactosidase; Provisional 90.89
PRK12475338 thiamine/molybdopterin biosynthesis MoeB-like prot 90.84
PRK12548289 shikimate 5-dehydrogenase; Provisional 90.72
PRK04346397 tryptophan synthase subunit beta; Validated 90.65
PRK14619308 NAD(P)H-dependent glycerol-3-phosphate dehydrogena 90.53
PTZ00117319 malate dehydrogenase; Provisional 90.52
PRK15438378 erythronate-4-phosphate dehydrogenase PdxB; Provis 90.38
PRK00258278 aroE shikimate 5-dehydrogenase; Reviewed 90.29
PTZ00082321 L-lactate dehydrogenase; Provisional 90.24
PRK14189285 bifunctional 5,10-methylene-tetrahydrofolate dehyd 90.02
PRK14194301 bifunctional 5,10-methylene-tetrahydrofolate dehyd 89.95
cd00704323 MDH Malate dehydrogenase. Malate dehydrogenase (MD 89.83
COG0578 532 GlpA Glycerol-3-phosphate dehydrogenase [Energy pr 89.79
PRK07878 392 molybdopterin biosynthesis-like protein MoeZ; Vali 89.74
PRK14176287 bifunctional 5,10-methylene-tetrahydrofolate dehyd 89.72
PF00899135 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a 89.63
PRK14178279 bifunctional 5,10-methylene-tetrahydrofolate dehyd 89.62
PRK06223307 malate dehydrogenase; Reviewed 89.21
PRK14851 679 hypothetical protein; Provisional 89.08
cd00755231 YgdL_like Family of activating enzymes (E1) of ubi 88.91
COG0169283 AroE Shikimate 5-dehydrogenase [Amino acid transpo 88.79
PRK07688339 thiamine/molybdopterin biosynthesis ThiF/MoeB-like 88.75
TIGR02992326 ectoine_eutC ectoine utilization protein EutC. Mem 88.57
PF01210157 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate 88.53
cd01337310 MDH_glyoxysomal_mitochondrial Glyoxysomal and mito 88.11
PF02056183 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP 88.11
PF02826178 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy 88.03
TIGR01915219 npdG NADPH-dependent F420 reductase. This model re 87.88
PF01262168 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal 87.88
cd05298 437 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; 87.75
TIGR01763305 MalateDH_bact malate dehydrogenase, NAD-dependent. 87.7
TIGR01758324 MDH_euk_cyt malate dehydrogenase, NAD-dependent. T 87.51
TIGR00561511 pntA NAD(P) transhydrogenase, alpha subunit. In so 87.5
cd01336325 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli 87.38
PRK08374336 homoserine dehydrogenase; Provisional 86.64
COG0334411 GdhA Glutamate dehydrogenase/leucine dehydrogenase 86.51
PLN02306386 hydroxypyruvate reductase 86.37
PRK14183281 bifunctional 5,10-methylene-tetrahydrofolate dehyd 86.21
PRK07634245 pyrroline-5-carboxylate reductase; Reviewed 86.2
PRK12550272 shikimate 5-dehydrogenase; Reviewed 86.19
TIGR00872298 gnd_rel 6-phosphogluconate dehydrogenase (decarbox 86.17
PRK14618328 NAD(P)H-dependent glycerol-3-phosphate dehydrogena 86.12
PRK14190284 bifunctional 5,10-methylene-tetrahydrofolate dehyd 86.03
PRK11880267 pyrroline-5-carboxylate reductase; Reviewed 85.9
PRK14184286 bifunctional 5,10-methylene-tetrahydrofolate dehyd 85.82
PRK08644212 thiamine biosynthesis protein ThiF; Provisional 85.53
PRK14106 450 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 85.45
COG0111324 SerA Phosphoglycerate dehydrogenase and related de 85.26
PRK14179284 bifunctional 5,10-methylene-tetrahydrofolate dehyd 85.11
cd01338322 MDH_choloroplast_like Chloroplast-like malate dehy 84.84
TIGR01772312 MDH_euk_gproteo malate dehydrogenase, NAD-dependen 84.71
cd00757228 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 84.67
PRK13243333 glyoxylate reductase; Reviewed 84.54
COG0686371 Ald Alanine dehydrogenase [Amino acid transport an 84.43
PRK14174295 bifunctional 5,10-methylene-tetrahydrofolate dehyd 84.4
PRK07066321 3-hydroxybutyryl-CoA dehydrogenase; Validated 84.34
PRK08291330 ectoine utilization protein EutC; Validated 84.07
PRK14188296 bifunctional 5,10-methylene-tetrahydrofolate dehyd 83.92
PRK15116268 sulfur acceptor protein CsdL; Provisional 83.78
TIGR02355240 moeB molybdopterin synthase sulfurylase MoeB. This 83.77
PRK00094325 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr 83.7
PRK01710 458 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 83.57
cd01339300 LDH-like_MDH L-lactate dehydrogenase-like malate d 83.09
PRK14177284 bifunctional 5,10-methylene-tetrahydrofolate dehyd 83.01
cd05290307 LDH_3 A subgroup of L-lactate dehydrogenases. L-la 82.86
PF02882160 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl 82.7
TIGR01759323 MalateDH-SF1 malate dehydrogenase. This model repr 82.52
PRK12480330 D-lactate dehydrogenase; Provisional 82.28
PRK14172278 bifunctional 5,10-methylene-tetrahydrofolate dehyd 82.22
PRK06436303 glycerate dehydrogenase; Provisional 82.14
cd01485198 E1-1_like Ubiquitin activating enzyme (E1), repeat 82.13
COG1486 442 CelF Alpha-galactosidases/6-phospho-beta-glucosida 81.6
PRK05690245 molybdopterin biosynthesis protein MoeB; Provision 81.38
PRK02472 447 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 81.2
PTZ00345365 glycerol-3-phosphate dehydrogenase; Provisional 80.98
TIGR00507270 aroE shikimate 5-dehydrogenase. This model finds p 80.9
PRK07574385 formate dehydrogenase; Provisional 80.9
PRK07530292 3-hydroxybutyryl-CoA dehydrogenase; Validated 80.72
PLN02516299 methylenetetrahydrofolate dehydrogenase (NADP+) 80.71
PRK09310477 aroDE bifunctional 3-dehydroquinate dehydratase/sh 80.69
PRK12921305 2-dehydropantoate 2-reductase; Provisional 80.68
PLN02545295 3-hydroxybutyryl-CoA dehydrogenase 80.67
PRK15469312 ghrA bifunctional glyoxylate/hydroxypyruvate reduc 80.6
cd01492197 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit 80.57
PRK06522304 2-dehydropantoate 2-reductase; Reviewed 80.21
TIGR01408 1008 Ube1 ubiquitin-activating enzyme E1. This model re 80.21
PRK05442326 malate dehydrogenase; Provisional 80.16
PRK05808282 3-hydroxybutyryl-CoA dehydrogenase; Validated 80.12
cd01483143 E1_enzyme_family Superfamily of activating enzymes 80.06
TIGR03140515 AhpF alkyl hydroperoxide reductase, F subunit. Thi 80.05
PRK08410311 2-hydroxyacid dehydrogenase; Provisional 80.04
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=2.3e-223  Score=1772.46  Aligned_cols=560  Identities=63%  Similarity=1.043  Sum_probs=547.0

Q ss_pred             ccCCCcccCCCCCccc-ccccccccccccCcCCccCCCCCHHHHhccccCCCCCCcccCHHHHHHHHHHHHhcCCCchhH
Q 006498           82 VYGEDTATEDQPVTPW-SVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQK  160 (643)
Q Consensus        82 ~~~~~~~~~~~~~~~~-~~~~~~G~~lL~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~K  160 (643)
                      .++++..+..+...+| ..+.++|+++|+||++|||+|||.+||++|||||||||.|+|+|+|++||+.+|+++++||+|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~g~~ll~~p~~NKglAFTl~ERq~l~i~GLLPp~v~t~d~Q~~r~~~~l~~~~~~l~k   87 (582)
T KOG1257|consen    8 VYSTAPLTLAHRITPRPVESKKRGYDLLRDPRYNKGLAFTLEERQRLGIHGLLPPVVRTQDEQALRCMNNLRSLTSPLAK   87 (582)
T ss_pred             cccCCCccccccccccccccccCChhhccCCCcccccccCHHHHHhhCccccCCccccCHHHHHHHHHHHHHhccchHHH
Confidence            3444444434444555 667789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhHHHHHHHhhhcccccCCcccchhhHHHHHHHhhhhcCCCccccccCCcchHHHHHhcCCCCCeeEEEEe
Q 006498          161 YMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVT  240 (643)
Q Consensus       161 y~~L~~L~~~Ne~LFY~ll~~~~ee~lPivYTPtVG~aCq~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVT  240 (643)
                      |+||++||+|||+|||++|++|+||+||||||||||+|||+||+|||+|+|||||++|||||.++|+|||.++|++||||
T Consensus        88 y~~L~~L~~rNerLfY~~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~nWp~~~V~~IvVT  167 (582)
T KOG1257|consen   88 YIYLMDLQDRNERLFYRLLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKNWPERNVKAIVVT  167 (582)
T ss_pred             HHHHHHHHHhhhHHHHHHHHhhHHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHHHhCCccceeEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCceeecCCCCCCcccccchhhhhhHhhhcCCCCCceeeeeecCCCCcccccCCcccccccccCCchhhhHHHHHHHHHH
Q 006498          241 DGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTA  320 (643)
Q Consensus       241 DG~rILGLGDlG~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~DplYlGlr~~R~~geeY~~fidefv~a  320 (643)
                      ||||||||||||++|||||+|||+||||||||+|++|||||||||||||+||+||+|+|+||+|++|+|||+|+||||+|
T Consensus       168 DGerILGLGDlG~~GmgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~A  247 (582)
T KOG1257|consen  168 DGERILGLGDLGVNGMGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEA  247 (582)
T ss_pred             CCCceecccccccCcccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCcceeeecCCCCcHHHHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHH
Q 006498          321 VKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAE  400 (643)
Q Consensus       321 v~~~fGp~~lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~  400 (643)
                      |+++|||++|||||||+++|||++|+|||.+||||||||||||+|+|||||+|+|++|++|+||+|||+|||+||+|||+
T Consensus       248 v~~~yG~~~lIqFEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd~~ilf~GAG~A~~GIA~  327 (582)
T KOG1257|consen  248 VVQRYGPNTLIQFEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSDHVILFLGAGEAALGIAN  327 (582)
T ss_pred             HHHHhCcceEEEehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCccccceEEEecCchHHhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHH
Q 006498          401 LIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKE  480 (643)
Q Consensus       401 li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ftee  480 (643)
                      ||+.+|+++ |+|+|||++||||||++|||+++|+.+++++|++|||+++++++|+|||+.||||||||+|++||+||||
T Consensus       328 l~v~~m~~~-Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~~~L~e~V~~vKPtvLiG~S~~~g~Ftee  406 (582)
T KOG1257|consen  328 LIVMAMVKE-GLSEEEARKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEIKDLEEAVKEVKPTVLIGASGVGGAFTEE  406 (582)
T ss_pred             HHHHHHHHc-CCCHHHHhccEEEEecCceeeccccCCCChhhccccccChHHHHHHHHHHhcCCcEEEecccCCccCCHH
Confidence            999999996 9999999999999999999999998789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCcccCCeeeCcCCCCcccccchhhHHHHHhCC
Q 006498          481 VVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGA  560 (643)
Q Consensus       481 vv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~GraifASGSPF~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a  560 (643)
                      |||+|+++|||||||||||||+++||||||||+||+|||||||||||+||+|+||+|+||||||+|+|||||||+++|++
T Consensus       407 vl~~Ma~~~erPiIFalSNPT~~aECtae~ay~~t~Gr~ifaSGSPF~pV~~~gK~~~pgQ~NN~yiFPGi~Lg~vlsg~  486 (582)
T KOG1257|consen  407 VLRAMAKSNERPIIFALSNPTSKAECTAEQAYKWTKGRAIFASGSPFPPVEYNGKVYVPGQGNNAYIFPGIGLGVVLSGA  486 (582)
T ss_pred             HHHHHHhcCCCceEEecCCCccccccCHHHHhhhcCCcEEEecCCCCCCceeCCcEecccCCceeEecchHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCHHHHHHHHHHHHcccCccCCCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCcccCCC
Q 006498          561 IRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAYR  640 (643)
Q Consensus       561 ~~Itd~M~laAA~aLA~~v~~~~~~~g~l~P~~~~ir~Vs~~VA~aVa~~A~~~GlA~~~~~p~dl~~~i~~~m~~P~Y~  640 (643)
                      ++|+|+||++||++||++++++++++|.||||+++||+||.+||++|+++||++|+|+..|+|+|+.+|++++||+|+|+
T Consensus       487 ~~i~D~mfl~Aae~LA~~v~~e~~~~g~lyPpl~~ir~iS~~Ia~aV~~~a~~~glA~~~p~P~d~~~~~~~~~y~~~Y~  566 (582)
T KOG1257|consen  487 RRIPDEMFLAAAEALAEQVSEEELEKGRLYPPLSNIREISANIAAAVLKYAYEEGLATRYPEPKDKEKFIEESMYNPEYR  566 (582)
T ss_pred             ccCCHHHHHHHHHHHHhhCCHhHhhcCCcCCChhHHHHHHHHHHHHHHHHHHhcCccccCCCcccHHHHHHhccCCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC
Q 006498          641 TY  642 (643)
Q Consensus       641 ~~  642 (643)
                      ++
T Consensus       567 ~~  568 (582)
T KOG1257|consen  567 NS  568 (582)
T ss_pred             cc
Confidence            75

>PRK13529 malate dehydrogenase; Provisional Back     alignment and domain information
>PLN03129 NADP-dependent malic enzyme; Provisional Back     alignment and domain information
>PTZ00317 NADP-dependent malic enzyme; Provisional Back     alignment and domain information
>COG0281 SfcA Malic enzyme [Energy production and conversion] Back     alignment and domain information
>PRK12861 malic enzyme; Reviewed Back     alignment and domain information
>PRK12862 malic enzyme; Reviewed Back     alignment and domain information
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed Back     alignment and domain information
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1 Back     alignment and domain information
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e Back     alignment and domain information
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme Back     alignment and domain information
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e Back     alignment and domain information
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 Back     alignment and domain information
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins Back     alignment and domain information
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional Back     alignment and domain information
>PLN02477 glutamate dehydrogenase Back     alignment and domain information
>TIGR01035 hemA glutamyl-tRNA reductase Back     alignment and domain information
>PRK09414 glutamate dehydrogenase; Provisional Back     alignment and domain information
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase Back     alignment and domain information
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) Back     alignment and domain information
>TIGR00936 ahcY adenosylhomocysteinase Back     alignment and domain information
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed Back     alignment and domain information
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase Back     alignment and domain information
>PRK14031 glutamate dehydrogenase; Provisional Back     alignment and domain information
>PRK14982 acyl-ACP reductase; Provisional Back     alignment and domain information
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase Back     alignment and domain information
>PLN02494 adenosylhomocysteinase Back     alignment and domain information
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit Back     alignment and domain information
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases Back     alignment and domain information
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional Back     alignment and domain information
>PRK14030 glutamate dehydrogenase; Provisional Back     alignment and domain information
>PLN00203 glutamyl-tRNA reductase Back     alignment and domain information
>PRK08306 dipicolinate synthase subunit A; Reviewed Back     alignment and domain information
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase Back     alignment and domain information
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] Back     alignment and domain information
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 Back     alignment and domain information
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PTZ00075 Adenosylhomocysteinase; Provisional Back     alignment and domain information
>PRK13940 glutamyl-tRNA reductase; Provisional Back     alignment and domain information
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated Back     alignment and domain information
>PLN00106 malate dehydrogenase Back     alignment and domain information
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 Back     alignment and domain information
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK12549 shikimate 5-dehydrogenase; Reviewed Back     alignment and domain information
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase Back     alignment and domain information
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase Back     alignment and domain information
>TIGR00518 alaDH alanine dehydrogenase Back     alignment and domain information
>PRK00676 hemA glutamyl-tRNA reductase; Validated Back     alignment and domain information
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type Back     alignment and domain information
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain Back     alignment and domain information
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 Back     alignment and domain information
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related Back     alignment and domain information
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase Back     alignment and domain information
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E Back     alignment and domain information
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional Back     alignment and domain information
>PRK05086 malate dehydrogenase; Provisional Back     alignment and domain information
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated Back     alignment and domain information
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family Back     alignment and domain information
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated Back     alignment and domain information
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] Back     alignment and domain information
>PRK08605 D-lactate dehydrogenase; Validated Back     alignment and domain information
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 Back     alignment and domain information
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase Back     alignment and domain information
>PRK08328 hypothetical protein; Provisional Back     alignment and domain information
>PTZ00325 malate dehydrogenase; Provisional Back     alignment and domain information
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated Back     alignment and domain information
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases Back     alignment and domain information
>PRK12749 quinate/shikimate dehydrogenase; Reviewed Back     alignment and domain information
>PRK00066 ldh L-lactate dehydrogenase; Reviewed Back     alignment and domain information
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated Back     alignment and domain information
>PRK08223 hypothetical protein; Validated Back     alignment and domain information
>PLN02928 oxidoreductase family protein Back     alignment and domain information
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated Back     alignment and domain information
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 Back     alignment and domain information
>PRK05600 thiamine biosynthesis protein ThiF; Validated Back     alignment and domain information
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated Back     alignment and domain information
>PRK14027 quinate/shikimate dehydrogenase; Provisional Back     alignment and domain information
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases Back     alignment and domain information
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase Back     alignment and domain information
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated Back     alignment and domain information
>cd01487 E1_ThiF_like E1_ThiF_like Back     alignment and domain information
>PRK15076 alpha-galactosidase; Provisional Back     alignment and domain information
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional Back     alignment and domain information
>PRK12548 shikimate 5-dehydrogenase; Provisional Back     alignment and domain information
>PRK04346 tryptophan synthase subunit beta; Validated Back     alignment and domain information
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PTZ00117 malate dehydrogenase; Provisional Back     alignment and domain information
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional Back     alignment and domain information
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed Back     alignment and domain information
>PTZ00082 L-lactate dehydrogenase; Provisional Back     alignment and domain information
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>cd00704 MDH Malate dehydrogenase Back     alignment and domain information
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] Back     alignment and domain information
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated Back     alignment and domain information
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP Back     alignment and domain information
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK06223 malate dehydrogenase; Reviewed Back     alignment and domain information
>PRK14851 hypothetical protein; Provisional Back     alignment and domain information
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E Back     alignment and domain information
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated Back     alignment and domain information
>TIGR02992 ectoine_eutC ectoine utilization protein EutC Back     alignment and domain information
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate Back     alignment and domain information
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases Back     alignment and domain information
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related Back     alignment and domain information
>TIGR01915 npdG NADPH-dependent F420 reductase Back     alignment and domain information
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 Back     alignment and domain information
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases Back     alignment and domain information
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent Back     alignment and domain information
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent Back     alignment and domain information
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit Back     alignment and domain information
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases Back     alignment and domain information
>PRK08374 homoserine dehydrogenase; Provisional Back     alignment and domain information
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02306 hydroxypyruvate reductase Back     alignment and domain information
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed Back     alignment and domain information
>PRK12550 shikimate 5-dehydrogenase; Reviewed Back     alignment and domain information
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) Back     alignment and domain information
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed Back     alignment and domain information
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK08644 thiamine biosynthesis protein ThiF; Provisional Back     alignment and domain information
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases Back     alignment and domain information
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent Back     alignment and domain information
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA Back     alignment and domain information
>PRK13243 glyoxylate reductase; Reviewed Back     alignment and domain information
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated Back     alignment and domain information
>PRK08291 ectoine utilization protein EutC; Validated Back     alignment and domain information
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK15116 sulfur acceptor protein CsdL; Provisional Back     alignment and domain information
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB Back     alignment and domain information
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated Back     alignment and domain information
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins Back     alignment and domain information
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases Back     alignment and domain information
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) Back     alignment and domain information
>TIGR01759 MalateDH-SF1 malate dehydrogenase Back     alignment and domain information
>PRK12480 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK06436 glycerate dehydrogenase; Provisional Back     alignment and domain information
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like Back     alignment and domain information
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional Back     alignment and domain information
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional Back     alignment and domain information
>TIGR00507 aroE shikimate 5-dehydrogenase Back     alignment and domain information
>PRK07574 formate dehydrogenase; Provisional Back     alignment and domain information
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated Back     alignment and domain information
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) Back     alignment and domain information
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed Back     alignment and domain information
>PRK12921 2-dehydropantoate 2-reductase; Provisional Back     alignment and domain information
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase Back     alignment and domain information
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional Back     alignment and domain information
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 Back     alignment and domain information
>PRK06522 2-dehydropantoate 2-reductase; Reviewed Back     alignment and domain information
>TIGR01408 Ube1 ubiquitin-activating enzyme E1 Back     alignment and domain information
>PRK05442 malate dehydrogenase; Provisional Back     alignment and domain information
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated Back     alignment and domain information
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins Back     alignment and domain information
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit Back     alignment and domain information
>PRK08410 2-hydroxyacid dehydrogenase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query643
2aw5_A575 Crystal Structure Of A Human Malic Enzyme Length = 1e-164
1gq2_A555 Malic Enzyme From Pigeon Liver Length = 555 1e-160
1gz3_A554 Molecular Mechanism For The Regulation Of Human Mit 1e-154
1qr6_A584 Human Mitochondrial Nad(P)-Dependent Malic Enzyme L 1e-149
1efk_A584 Structure Of Human Malic Enzyme In Complex With Ket 1e-149
1do8_A564 Crystal Structure Of A Closed Form Of Human Mitocho 1e-149
1gz4_A551 Molecular Mechanism Of The Regulation Of Human Mito 1e-149
1llq_A605 Crystal Structure Of Malic Enzyme From Ascaris Suum 1e-147
3nv9_A487 Crystal Structure Of Entamoeba Histolytica Malic En 5e-23
2dvm_A439 Nad Complex Structure Of Ph1275 Protein From Pyroco 5e-21
1ww8_A439 Crystal Structure Of Malic Enzyme From Pyrococcus H 8e-20
2a9f_A398 Crystal Structure Of A Putative Malic Enzyme ((S)- 2e-13
2hae_A386 Crystal Structure Of A Putative Malic Enzyme (Malat 2e-12
1vl6_A388 Crystal Structure Of Nad-Dependent Malic Enzyme (Tm 3e-11
>pdb|2AW5|A Chain A, Crystal Structure Of A Human Malic Enzyme Length = 575 Back     alignment and structure 
Iteration: 1

 Score =  574 bits (1479), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 283/568 (49%), Positives = 379/568 (66%), Gaps = 17/568 (2%)
Query: 73  SGVSGGVQDVYGEDTATEDQPVTPWSVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGL 132
           SGV  G +++Y +              S+  GY L R+PH NK LAF+ +ER    + GL
Sbjct: 9   SGVDLGTENLYFQ--------------SMQRGYLLTRNPHLNKDLAFTLEERQQLNIHGL 54
Query: 133 LPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYT 192
           LPP+  SQE+QV +++ N         +Y+ +MDLQ+RN+KLFY++L  ++E+ +PIVYT
Sbjct: 55  LPPSFNSQEIQVLRVVKNFEHLNSDFDRYLLLMDLQDRNEKLFYRVLTSDIEKFMPIVYT 114
Query: 193 PTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLG 252
           PTVG ACQ+Y  ++ +P+G+FI++ D+G +  VL  WPE  I+ IVVTDGERILGLGDLG
Sbjct: 115 PTVGLACQQYSLVFRKPRGLFITIHDRGHIASVLNAWPEDVIKAIVVTDGERILGLGDLG 174
Query: 253 CHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAE 312
           C+GMGIPVGKL+LYTA GG+ P  CLPV +DVGT NE+LL D  YIGLRQ+R  G EY +
Sbjct: 175 CNGMGIPVGKLALYTACGGMNPQECLPVILDVGTENEELLKDPLYIGLRQRRVRGSEYDD 234
Query: 313 LLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLIS 372
            L EFM AV   YG   LIQFEDFAN NAF LL KY   +  FNDDIQGTASV +AGL++
Sbjct: 235 FLDEFMEAVSSKYGMNCLIQFEDFANVNAFRLLNKYRNQYCTFNDDIQGTASVAVAGLLA 294
Query: 373 AMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVS 432
           A++     L+DQ  LF GAGEA  GIA LI + + K+  +P E+  KKIWLVDSKGLIV 
Sbjct: 295 ALRITKNKLSDQTILFQGAGEAALGIAHLIVMALEKE-GLPKEKAIKKIWLVDSKGLIVK 353
Query: 433 SRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKP 492
            R  SL   K+ +AHEHE +K L   V  IKPT LIG +  G  F++++++ MA+ NE+P
Sbjct: 354 GR-ASLTQEKEKFAHEHEEMKNLEAIVQEIKPTALIGVAAIGGAFSEQILKDMAAFNERP 412
Query: 493 IIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGD-NVFVPGQANNAYIFPGL 551
           IIF+LSNPTS++EC+AE+ Y  ++GRAIFASGSPFDP    +     PGQ NN+Y+FPG+
Sbjct: 413 IIFALSNPTSKAECSAEQCYKITKGRAIFASGSPFDPVTLPNGQTLYPGQGNNSYVFPGV 472
Query: 552 GLGLIMSGAIRVHDDMXXXXXXXXXGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKA 611
            LG++  G  ++ D++          QV+ ++ ++G LYPP   IR +S  IA ++   A
Sbjct: 473 ALGVVACGLRQITDNIFLTTAEVIAQQVSDKHLEEGRLYPPLNTIRDVSLKIAEKIVKDA 532
Query: 612 YELGLATRLPPPKDLVKYAESCMYSPAY 639
           Y+   AT  P P++   +  S MYS  Y
Sbjct: 533 YQEKTATVYPEPQNKEAFVRSQMYSTDY 560
>pdb|1GQ2|A Chain A, Malic Enzyme From Pigeon Liver Length = 555 Back     alignment and structure
>pdb|1GZ3|A Chain A, Molecular Mechanism For The Regulation Of Human Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And Fumarate Length = 554 Back     alignment and structure
>pdb|1QR6|A Chain A, Human Mitochondrial Nad(P)-Dependent Malic Enzyme Length = 584 Back     alignment and structure
>pdb|1EFK|A Chain A, Structure Of Human Malic Enzyme In Complex With Ketomalonate Length = 584 Back     alignment and structure
>pdb|1DO8|A Chain A, Crystal Structure Of A Closed Form Of Human Mitochondrial Nad(P)+-Dependent Malic Enzyme Length = 564 Back     alignment and structure
>pdb|1GZ4|A Chain A, Molecular Mechanism Of The Regulation Of Human Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And Fumarate Length = 551 Back     alignment and structure
>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum Complexed With Nicotinamide Adenine Dinucleotide Length = 605 Back     alignment and structure
>pdb|3NV9|A Chain A, Crystal Structure Of Entamoeba Histolytica Malic Enzyme Length = 487 Back     alignment and structure
>pdb|2DVM|A Chain A, Nad Complex Structure Of Ph1275 Protein From Pyrococcus Horikoshii Length = 439 Back     alignment and structure
>pdb|1WW8|A Chain A, Crystal Structure Of Malic Enzyme From Pyrococcus Horikoshii Ot3 Length = 439 Back     alignment and structure
>pdb|2A9F|A Chain A, Crystal Structure Of A Putative Malic Enzyme ((S)- Malate:nad+ Oxidoreductase (Decarboxylating)) Length = 398 Back     alignment and structure
>pdb|2HAE|A Chain A, Crystal Structure Of A Putative Malic Enzyme (Malate Oxidoreductase) Length = 386 Back     alignment and structure
>pdb|1VL6|A Chain A, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542) From Thermotoga Maritima At 2.61 A Resolution Length = 388 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query643
1gq2_A555 Malic enzyme; oxidoreductase, pigeon liver, NADP-d 0.0
1pj3_A564 NAD-dependent malic enzyme, mitochondrial; oxidati 0.0
1o0s_A605 NAD-ME, NAD-dependent malic enzyme; oxidoreductase 0.0
3nv9_A487 Malic enzyme; rossmann fold, oxidoreductase; 2.25A 2e-43
2a9f_A398 Putative malic enzyme ((S)-malate:NAD+ oxidoreduct 4e-42
2dvm_A439 Malic enzyme, 439AA long hypothetical malate oxido 4e-34
1vl6_A388 Malate oxidoreductase; TM0542, NAD-dependent malic 1e-33
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-14
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A Length = 555 Back     alignment and structure
 Score =  872 bits (2254), Expect = 0.0
 Identities = 284/541 (52%), Positives = 374/541 (69%), Gaps = 3/541 (0%)

Query: 104 GYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMA 163
           GY +LRDPH NKG+AF+ +ER    + GLLPP  + Q+ QV  +L N  +    L +Y+ 
Sbjct: 3   GYEVLRDPHLNKGMAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLDRYIL 62

Query: 164 MMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVL 223
           +M LQ+RN+KLFYK+L  ++E  +PIVYTPTVG ACQ YG  + RP+G+FI++ D+G + 
Sbjct: 63  LMSLQDRNEKLFYKVLTSDIERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIA 122

Query: 224 EVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTID 283
            +L++WPE  I+ IVVTDGERILGLGDLGC+GMGIPVGKL+LYTA GG++P  CLPV +D
Sbjct: 123 TMLQSWPESVIKAIVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVKPHQCLPVMLD 182

Query: 284 VGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFD 343
           VGT+NE LL D  YIGLR KR  GQ Y +LL EFM AV   YG   LIQFEDFAN NAF 
Sbjct: 183 VGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFANANAFR 242

Query: 344 LLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIA 403
           LL KY   +  FNDDIQGTASV +AGL++A++     L+D   LF GAGEA  GIA LI 
Sbjct: 243 LLHKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIV 302

Query: 404 LEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 463
           + + K+  +  EE  K+IW+VDSKGLIV  R  SL   K+ +AHEH  +K L D V  IK
Sbjct: 303 MAMQKE-GVSKEEAIKRIWMVDSKGLIVKGR-ASLTPEKEHFAHEHCEMKNLEDIVKDIK 360

Query: 464 PTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFAS 523
           PT+LIG +  G  FT+++++ MA+ N++PIIF+LSNPTS++ECTAE+ Y +++GR IFAS
Sbjct: 361 PTVLIGVAAIGGAFTQQILQDMAAFNKRPIIFALSNPTSKAECTAEQLYKYTEGRGIFAS 420

Query: 524 GSPFDPFEYGDNV-FVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQE 582
           GSPFDP          PGQ NN+Y+FPG+ LG+I  G   + DD+ L  AE +A +V++E
Sbjct: 421 GSPFDPVTLPSGQTLYPGQGNNSYVFPGVALGVISCGLKHIGDDVFLTTAEVIAQEVSEE 480

Query: 583 NFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAYRTY 642
           N  +G LYPP   I+++S  IA  +A +AY    A+  P P+DL  +  S +YS  Y  +
Sbjct: 481 NLQEGRLYPPLVTIQQVSLKIAVRIAKEAYRNNTASTYPQPEDLEAFIRSQVYSTDYNCF 540

Query: 643 R 643
            
Sbjct: 541 V 541
>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A* Length = 564 Back     alignment and structure
>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A* Length = 605 Back     alignment and structure
>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica} Length = 487 Back     alignment and structure
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} Length = 398 Back     alignment and structure
>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* Length = 439 Back     alignment and structure
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* Length = 388 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 643
d1o0sa2294 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent 1e-134
d1gq2a2257 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent 1e-134
d1pj3a2259 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent 1e-131
d1pj3a1294 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent 1e-104
d1o0sa1308 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent 1e-102
d1gq2a1298 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent 6e-98
d1vl6a1222 c.2.1.7 (A:155-376) Malate oxidoreductase (malic e 6e-49
d1vl6a2154 c.58.1.3 (A:1-154) Malate oxidoreductase (malic en 7e-05
>d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} Length = 294 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Malic enzyme N-domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

 Score =  394 bits (1013), Expect = e-134
 Identities = 143/289 (49%), Positives = 196/289 (67%), Gaps = 10/289 (3%)

Query: 80  QDVYGEDTATEDQPVTP--------WSVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRG 131
           +DVY  +    D+                      LL++P  NKG+ FS  ER    L G
Sbjct: 6   EDVYSHNLPPMDEKEMALYKLYRPERVTPKKRSAELLKEPRLNKGMGFSLYERQYLGLHG 65

Query: 132 LLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVY 191
           LLPP  ++QE Q  +++  +R+    L +Y+ +  LQ+RN+KLFY+++ D+V+EL+PIVY
Sbjct: 66  LLPPAFMTQEQQAYRVITKLREQPNDLARYIQLDGLQDRNEKLFYRVVCDHVKELMPIVY 125

Query: 192 TPTVGEACQKYGSIYSRPQGVFISLKDK--GKVLEVLRNWPEKNIQVIVVTDGERILGLG 249
           TPTVG ACQ +G IY +P+G++I++ D    K+ ++L NW E++++ IVVTDGERILGLG
Sbjct: 126 TPTVGLACQNFGYIYRKPKGLYITINDNSVSKIYQILSNWHEEDVRAIVVTDGERILGLG 185

Query: 250 DLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQE 309
           DLG +G+GIPVGKL+LY ALGG++P  CLPV +DVGTNN  LL+D FYIGLR KR  G++
Sbjct: 186 DLGAYGIGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKD 245

Query: 310 YAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDD 358
           Y  LL  FM A  + YG++ LIQFEDFAN NAF LL+KY   + +FNDD
Sbjct: 246 YDTLLDNFMKACTKKYGQKTLIQFEDFANPNAFRLLDKYQDKYTMFNDD 294
>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Length = 257 Back     information, alignment and structure
>d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} Length = 259 Back     information, alignment and structure
>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} Length = 294 Back     information, alignment and structure
>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} Length = 308 Back     information, alignment and structure
>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Length = 298 Back     information, alignment and structure
>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} Length = 222 Back     information, alignment and structure
>d1vl6a2 c.58.1.3 (A:1-154) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} Length = 154 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query643
d1o0sa2294 Mitochondrial NAD(P)-dependent malic enzyme {Pig r 100.0
d1gq2a2257 Mitochondrial NAD(P)-dependent malic enzyme {Domes 100.0
d1pj3a2259 Mitochondrial NAD(P)-dependent malic enzyme {Human 100.0
d1gq2a1298 Mitochondrial NAD(P)-dependent malic enzyme {Domes 100.0
d1o0sa1308 Mitochondrial NAD(P)-dependent malic enzyme {Pig r 100.0
d1pj3a1294 Mitochondrial NAD(P)-dependent malic enzyme {Human 100.0
d1vl6a1222 Malate oxidoreductase (malic enzyme) {Thermotoga m 100.0
d1vl6a2154 Malate oxidoreductase (malic enzyme) {Thermotoga m 99.96
d1gpja2159 Glutamyl tRNA-reductase middle domain {Archaeon Me 97.9
d1vi2a1182 Putative shikimate dehydrogenase YdiB {Escherichia 94.97
d1pjca1168 L-alanine dehydrogenase {Phormidium lapideum [TaxI 94.54
d1v9la1242 Glutamate dehydrogenase {Pyrobaculum islandicum [T 94.02
d1gtma1239 Glutamate dehydrogenase {Archaeon Pyrococcus furio 91.87
d1s6ya1169 6-phospho-beta-glucosidase {Bacillus stearothermop 91.25
d1b26a1234 Glutamate dehydrogenase {Thermotoga maritima [TaxI 90.94
d1l7da1183 Nicotinamide nucleotide transhydrogenase dI compon 89.08
d1obba1171 Alpha-glucosidase AglA {Thermotoga maritima [TaxId 87.76
d1up7a1162 6-phospho-beta-glucosidase {Thermotoga maritima [T 87.67
d1u8xx1167 Maltose-6'-phosphate glucosidase GlvA {Bacillus su 87.41
d1bgva1255 Glutamate dehydrogenase {Clostridium symbiosum [Ta 85.49
d1nyta1170 Shikimate 5-dehydrogenase AroE {Escherichia coli [ 85.34
d1luaa1191 Methylene-tetrahydromethanopterin dehydrogenase {M 85.07
d1c1da1201 Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ 84.37
d1hwxa1293 Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 83.49
d1ez4a1146 Lactate dehydrogenase {Lactobacillus pentosus [Tax 83.26
d1f0ya2192 Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum 82.65
d1npya1167 Shikimate 5-dehydrogenase-like protein HI0607 {Hae 82.3
d1y6ja1142 Lactate dehydrogenase {Clostridium thermocellum [T 81.56
d1p77a1171 Shikimate 5-dehydrogenase AroE {Haemophilus influe 81.21
d1pzga1154 Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 80.65
d1llda1143 Lactate dehydrogenase {Bifidobacterium longum, str 80.38
>d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Malic enzyme N-domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=100.00  E-value=0  Score=825.50  Aligned_cols=280  Identities=51%  Similarity=0.933  Sum_probs=265.1

Q ss_pred             CCCCCCCCCCCCCC-------CCCC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             55555887656789-------8766-533433321101276776688999888710145788997303799999999999
Q 006498           79 VQDVYGEDTATEDQ-------PVTP-WSVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHN  150 (643)
Q Consensus        79 ~~~~~~~~~~~~~~-------~~~~-~~~~~~~G~~lL~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~  150 (643)
                      ++|+|++...+.+.       ...| ++.+.++|.++|++|++|||||||.+||++|+|+|||||+|+|+|+|++|||.|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rG~~lL~~p~lNKGtAFt~~ER~~l~L~GLLP~~v~tle~Qv~R~~~~   84 (294)
T d1o0sa2           5 HEDVYSHNLPPMDEKEMALYKLYRPERVTPKKRSAELLKEPRLNKGMGFSLYERQYLGLHGLLPPAFMTQEQQAYRVITK   84 (294)
T ss_dssp             TSCTTCCSCCCCCHHHHHHHHHHSCCCCCCSCCHHHHHTCTTTCCGGGSCHHHHHHTTCTTTSCSCCCCHHHHHHHHHHH
T ss_pred             CHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             03455168998782324320114766667654478884698666746899999998598337899856899999999999


Q ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC--CHHHHHHHC
Q ss_conf             741799446899989999862999999962160134873026205999998754413999541045791--129999844
Q 006498          151 IRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDK--GKVLEVLRN  228 (643)
Q Consensus       151 ~~~~~~~l~Ky~~L~~L~~rNe~LFY~ll~~~~ee~lPivYTPtVg~ac~~~s~i~r~p~Glyis~~d~--g~i~~il~n  228 (643)
                      +++++++|+||+||++||++||+|||++|++|++|+||||||||||+|||+||++||+|+|||||++|+  |+|.++|+|
T Consensus        85 ~~~~~t~l~Ky~~L~~L~~~Ne~LFYrll~~h~ee~mPiVYTPTVG~Ac~~ys~~fr~prGlyisi~d~~~g~i~~il~n  164 (294)
T d1o0sa2          85 LREQPNDLARYIQLDGLQDRNEKLFYRVVCDHVKELMPIVYTPTVGLACQNFGYIYRKPKGLYITINDNSVSKIYQILSN  164 (294)
T ss_dssp             HHHSSSHHHHHHHHHHHHHHCHHHHHHHHHHTHHHHHHHHSTTHHHHHHHHHCSCCCCCCSEEEEGGGCSHHHHHHHHTT
T ss_pred             HHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHC
T ss_conf             86469958999999999873921648998767998658126852899999987642674506885266653449999862


Q ss_pred             CCCCCEEEEEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             99998029999508400037888876544430346667661699999521222037899501447933214456677626
Q 006498          229 WPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQ  308 (643)
Q Consensus       229 wp~~~v~viVVTDG~rILGLGDlG~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~DplYlGlr~~R~~ge  308 (643)
                      ||.++|++||||||+|||||||||+||||||+||++|||+||||+|++|||||||||||||+||+||+|+|+||+|++|+
T Consensus       165 wp~~~V~~iVVTDG~rILGlGDlG~~Gm~I~~GKl~lyta~~Gi~P~~~LPV~LDvGTnNe~LL~DPlYlG~R~~R~~g~  244 (294)
T d1o0sa2         165 WHEEDVRAIVVTDGERILGLGDLGAYGIGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGK  244 (294)
T ss_dssp             SSCSCCCEEEEECSSCBTTTBCCGGGGGHHHHHHHHHHHHHHCCCGGGEEEEEEESCCCCHHHHHCTTCCSCSSCCCCSH
T ss_pred             CCCCCCEEEEEECCCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCHHHCCCEEEECCCCHHHHHCCCCCCCCCCCCCCCH
T ss_conf             87456139999557204315676866330466489999872699865434648626888077602853256667788705


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHCCCCCEECCC
Q ss_conf             66899999999999860997200120399871899999872798603057
Q 006498          309 EYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDD  358 (643)
Q Consensus       309 eY~~fidEfv~Av~~~fGp~~lIqfEDf~~~~Af~lL~rYr~~~~~FNDD  358 (643)
                      +||+||||||+|++++|||+++||||||+++|||++|+|||+++||||||
T Consensus       245 ~Yd~fidefv~av~~~fgp~~li~~EDf~~~nA~~iL~kyr~~~~~FNDD  294 (294)
T d1o0sa2         245 DYDTLLDNFMKACTKKYGQKTLIQFEDFANPNAFRLLDKYQDKYTMFNDD  294 (294)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCEEEECSCCHHHHHHHHHHHTTTSEEEEHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf             79999999999999750898788542079735999999860168800889
>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Back     information, alignment and structure
>d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Back     information, alignment and structure
>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} Back     information, alignment and structure
>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vl6a2 c.58.1.3 (A:1-154) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} Back     information, alignment and structure
>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} Back     information, alignment and structure
>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} Back     information, alignment and structure
>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} Back     information, alignment and structure
>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} Back     information, alignment and structure
>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} Back     information, alignment and structure
>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Back     information, alignment and structure
>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Back     information, alignment and structure
>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Back     information, alignment and structure