Citrus Sinensis ID: 006504

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640---
MIGAMDLNASPLPEEDEDTFEGHIEEYAAQERIESGAEILRREREERRRRLKRDRPDDRPVHAYQPAMHDQYYQNKNYKSYDRNKLPPGWLDCPPFGQEIGGCIIPSKVPLSEFFNDCIPPGKRYSFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKRLDSTPCPSTPEWKRELDLNGEAVPDDDDDGVPAAALHENNEVTMTNDDVLGDEIPNDQQDAFRHFCYQTLKLNFGGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVTDDDRQLLYVFERGKKKLMEGSSVEFTGSFSSQLTSFLKQTPALLFWMPKFVFYIRSPSHDAYNGIKPKMDPLVMLNGAPIQF
cEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccHHHHHHHHHHHccccEEEEEccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcHHcccccccccccccccccccHHHHHHHHccccEEEEEccccEEEEEEEccEEEEEEccccEEEEccccccccccccccccccccEEEEEEEEEEEcccccccEEEEEEEEEEEEcccccccccHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccEEEEcccccHHHHHHHHHHHccccccccccEEEEEcccccccccccccEEEEcccccEEEEEEEEEcccccEEEEEEccccccccccEEEcccccHHHHHHHccccEEEEEEcccccEEEEccccccccccccccccEEEEccccccc
cEEEEEcccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHccccccccccccccccccccccccccEcccEcccEEEEcccccHHHHHHccHHHcccHHHHHHHHHHccccEEEEEEccccccccccHHHHccccEEEEcccccccccccHHHHHHHHHHHccccccccccccEEEEEcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHcccEEEEEcccEEEEEEEEcccEEEEEccccEEEEEEEccccccccccccccccccccccEEEEEccccccccccEEEEEEEEEEcccccccccHHHHHHHHHHHHHcHHHHHHHcccccccccccccccccEEEccccccHHHHHHHHHHHHHHcccccccEEEEcccccccccccccEEcccccccccEEEEEEEEcccccccEEccccccccccccEEEEEccccccHHHHHHHHHHHcccccccEEEEEccccccccccccccccEEEEccccccc
migamdlnasplpeededtfEGHIEEYAAQERIESGAEILRREREERRRRLkrdrpddrpvhayqpamhdqyyqnknyksydrnklppgwldcppfgqeiggciipskvplseffndcippgkrysfKQVIHQLRVLGRKLGLVIDltnttryyptsdlkkegikhvkiqckgrdavpdnasvnNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAevrppgiyknEYIEALYTFYhekrldstpcpstpewkreldlngeavpdddddgvpaaalhennevtmtnddvlgdeipndqqDAFRHFCYQTLklnfggrgnmqfpgshpvslnsdnlQLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFnfrrvqmrfpcrnsneglgekthhftlldgemiidklpdsRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVieprnyerhniyqsrnpyyrydlepfrvrrkDFWLLSTVNKLLKEFIPklshdadglvfqgwddpyvprtheglLKWKYARMNSVDFlfevtdddRQLLYVFERGKkklmegssveftgsfsSQLTSFLKQTPallfwmpkfvfyirspshdayngikpkmdplvmlngapiqf
migamdlnasplpeeDEDTFEGHIEEYaaqeriesgaeilrrereerrrrlkrdrpddrpvhayqpamhdqyyqNKNYKSYDRNKLPPGWLDCPPFGQEIGGCIIPSKVPLSEFFNDCIPPGKRYSFKQVIHQLRVLGRKLglvidltnttryyptsdlkkegikHVKIQCKgrdavpdnasvNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFaevrppgiyKNEYIEALYTFYHEKRLDSTPCPSTPEWKRELDLNGEAVPDDDDDGVPAAALHENNEVTMTNDDVLGDEIPNDQQDAFRHFCYQTLKLNFGGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFpcrnsneglgekthhftlldgemiidklpdsRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEvieprnyerhniyqsrnpyyryDLEPFRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLfevtdddrqLLYVFERGKKKLMEGSSVEFTGSFSSQLTSFLKQTPALLFWMPKFVFYIRSPSHDAYNGIKPKMDPLVMLNGAPIQF
MIGAMDLNASPLPEEDEDTFEGHIEEYAAQERIESGAEIlrrereerrrrlkrdrpddrpVHAYQPAMHDQYYQNKNYKSYDRNKLPPGWLDCPPFGQEIGGCIIPSKVPLSEFFNDCIPPGKRYSFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKRLDSTPCPSTPEWKRELDLNGEavpdddddgvpaaaLHENNEVTMTNDDVLGDEIPNDQQDAFRHFCYQTLKLNFGGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVTDDDRQLLYVFERGKKKLMEGSSVEFTGSFSSQLTSFLKQTPALLFWMPKFVFYIRSPSHDAYNGIKPKMDPLVMLNGAPIQF
**********************************************************************QYYQNKNYKSYDRNKLPPGWLDCPPFGQEIGGCIIPSKVPLSEFFNDCIPPGKRYSFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKRL*********************************************************QDAFRHFCYQTLKLNFGGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVTDDDRQLLYVFERGKKKLMEGSSVEFTGSFSSQLTSFLKQTPALLFWMPKFVFYIRSPSHDAYNGI*****************
*IGAM************************************************************************************WLDCPPFGQEIGGCIIPSKVPLSEFFNDCIPPGKRYSFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFY**************************************************DDVLGDEIPNDQQDAFRHFCYQTLKLNFGGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVTDDDRQLLYVFERGKKKLMEGSSVEFTGSFSSQLTSFLKQTPALLFWMPKFVFYIRSPSHDAYNGIKPKMDPLVMLNGAPI**
MIGAMDLNASPLPEEDEDTFEGHIEEYAAQERIESGAEILRREREERRRRLKRDRPDDRPVHAYQPAMHDQYYQNKNYKSYDRNKLPPGWLDCPPFGQEIGGCIIPSKVPLSEFFNDCIPPGKRYSFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKRLDSTPCPSTPEWKRELDLNGEAVPDDDDDGVPAAALHENNEVTMTNDDVLGDEIPNDQQDAFRHFCYQTLKLNFGGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVTDDDRQLLYVFERGKKKLMEGSSVEFTGSFSSQLTSFLKQTPALLFWMPKFVFYIRSPSHDAYNGIKPKMDPLVMLNGAPIQF
MIGAMDLNASPLPEEDEDTFEGHIEEYAAQERIESGAEILRREREERRRR**********************************KLPPGWLDCPPFGQEIGGCIIPSKVPLSEFFNDCIPPGKRYSFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKRLDSTPCPSTPEWKRE*************************EVTMTNDDVLGDEIPNDQQDAFRHFCYQTLKLNFGGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVTDDDRQLLYVFERGKKKLMEGSSVEFTGSFSSQLTSFLKQTPALLFWMPKFVFYIRSPSHDAYNGIKPKMDPLVMLNGAP**F
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MIGAMDLNASPLPEEDEDTFEGHIEEYAAQERIESGAEILRREREERRRRLKRDRPDDRPVHAYQPAMHDQYYQNKNYKSYDRNKLPPGWLDCPPFGQEIGGCIIPSKVPLSEFFNDCIPPGKRYSFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKRLDSTPCPSTPEWKRELDLNGEAVPDDDDDGVPAAALHENNEVTMTNDDVLGDEIPNDQQDAFRHFCYQTLKLNFGGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVTDDDRQLLYVFERGKKKLMEGSSVEFTGSFSSQLTSFLKQTPALLFWMPKFVFYIRSPSHDAYNGIKPKMDPLVMLNGAPIQF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query643 2.2.26 [Sep-21-2011]
O55236597 mRNA-capping enzyme OS=Mu yes no 0.707 0.762 0.344 3e-68
O60942597 mRNA-capping enzyme OS=Ho yes no 0.707 0.762 0.344 3e-65
Q17607623 mRNA-capping enzyme OS=Ca yes no 0.706 0.728 0.314 6e-60
Q6NY98598 mRNA-capping enzyme OS=Da yes no 0.289 0.311 0.391 1e-32
P40997402 mRNA-capping enzyme subun yes no 0.320 0.512 0.337 8e-27
Q7SB53402 mRNA-capping enzyme subun N/A no 0.354 0.567 0.312 7e-25
Q6FQ31 449 mRNA-capping enzyme subun yes no 0.312 0.447 0.361 1e-23
Q4KM79326 RNA/RNP complex-1-interac no no 0.272 0.536 0.387 2e-23
Q6NXK5321 RNA/RNP complex-1-interac no no 0.272 0.545 0.387 2e-23
P78587 449 mRNA-capping enzyme subun N/A no 0.367 0.525 0.306 3e-22
>sp|O55236|MCE1_MOUSE mRNA-capping enzyme OS=Mus musculus GN=Rngtt PE=1 SV=1 Back     alignment and function desciption
 Score =  260 bits (664), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 170/494 (34%), Positives = 260/494 (52%), Gaps = 39/494 (7%)

Query: 84  NKLPPGWLDCPPFGQEIGGCIIPSKVPLSEFFNDCIPPGKRYSFKQVIHQLRVLGRKLGL 143
           NK+PP WL+CP  GQ + G  +P K  L   ++  +    R+    + + L+ L  K+ L
Sbjct: 4   NKIPPRWLNCPRRGQPVAGRFLPLKTMLGPRYDSQVAEENRFHPSMLSNYLKSLKVKMSL 63

Query: 144 VIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKY 203
           ++DLTNT+R+Y  +D++KEGIK++K+QCKG    P   +   F+    +F   ++   + 
Sbjct: 64  LVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLCERF--NERSPPEL 121

Query: 204 ILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKR 263
           I VHCTHG NRTG++I  FL+     S+  A+  FA+ RPPGIYK +Y++ L+  Y +  
Sbjct: 122 IGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKELFRRYGDIE 181

Query: 264 LDSTPCPSTPEWKRELDLNGEAVPDDDDDGVPAAALH---------ENNEVTMTNDDVLG 314
            ++ P P  P+W  E +   +   D   D  P ++           +   + +    V G
Sbjct: 182 -EAPPPPVLPDWCFEDEDEEDEDEDGKKDSEPGSSASFSKRRKERLKLGAIFLEGITVKG 240

Query: 315 DEIPNDQQ--DAFRHFCYQTLKLNFGGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKA 372
                 Q      +  C+Q     F G     FPG+ PVS++  N++LL Q+ Y  +WKA
Sbjct: 241 VTQVTTQPKLGEVQQKCHQ-----FCGWEGSGFPGAQPVSMDKQNIRLLEQKPYKVSWKA 295

Query: 373 DGTRYMMLI-TIDGCYLIDRCFN-FRRVQMRFPCRNSNEGLGEKTHHF--TLLDGEMIID 428
           DGTRYMMLI   +  ++IDR  + F    + FP R       +   H   TLLDGEMIID
Sbjct: 296 DGTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFRK------DLRMHLSNTLLDGEMIID 349

Query: 429 KLPDSRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYY 488
           K+  + +   RYLIYD++  N   V +  F  R + +E+E+I PR+ +       +    
Sbjct: 350 KV--NGQAVPRYLIYDIIKFNAQPVGDCDFNIRLQCIEREIISPRHEKMKTGLIDKT--- 404

Query: 489 RYDLEPFRVRRKDFWLLSTVNKLLK-EFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWK 547
               EPF VR K F+ ++   KLL+  F  ++SH+ DGL+FQ     Y P   + +LKWK
Sbjct: 405 ---QEPFSVRPKQFFDINISRKLLEGNFAKEVSHEMDGLIFQPIGK-YKPGRCDDILKWK 460

Query: 548 YARMNSVDFLFEVT 561
              +NSVDF  ++T
Sbjct: 461 PPSLNSVDFRLKIT 474
Bifunctional mRNA-capping enzyme exhibiting RNA 5'-triphosphatase activity in the N-terminal part and mRNA guanylyltransferase activity in the C-terminal part. Catalyzes the first two steps of cap formation: by removing the gamma-phosphate from the 5'-triphosphate end of nascent mRNA to yield a diphosphate end, and by transferring the gmp moiety of GTP to the 5'-diphosphate terminus.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 5EC: 0
>sp|O60942|MCE1_HUMAN mRNA-capping enzyme OS=Homo sapiens GN=RNGTT PE=1 SV=1 Back     alignment and function description
>sp|Q17607|MCE1_CAEEL mRNA-capping enzyme OS=Caenorhabditis elegans GN=cel-1 PE=1 SV=2 Back     alignment and function description
>sp|Q6NY98|MCE1_DANRE mRNA-capping enzyme OS=Danio rerio GN=rngtt PE=2 SV=1 Back     alignment and function description
>sp|P40997|MCE1_SCHPO mRNA-capping enzyme subunit alpha OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ceg1 PE=1 SV=1 Back     alignment and function description
>sp|Q7SB53|MCE1_NEUCR mRNA-capping enzyme subunit alpha OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU06260 PE=3 SV=1 Back     alignment and function description
>sp|Q6FQ31|MCE1_CANGA mRNA-capping enzyme subunit alpha OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CEG1 PE=3 SV=1 Back     alignment and function description
>sp|Q4KM79|DUS11_RAT RNA/RNP complex-1-interacting phosphatase OS=Rattus norvegicus GN=Dusp11 PE=2 SV=1 Back     alignment and function description
>sp|Q6NXK5|DUS11_MOUSE RNA/RNP complex-1-interacting phosphatase OS=Mus musculus GN=Dusp11 PE=2 SV=1 Back     alignment and function description
>sp|P78587|MCE1_CANAX mRNA-capping enzyme subunit alpha OS=Candida albicans GN=CGT1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query643
356504293684 PREDICTED: mRNA-capping enzyme-like [Gly 0.925 0.869 0.796 0.0
356496154683 PREDICTED: mRNA-capping enzyme-like [Gly 0.923 0.869 0.796 0.0
224087675686 predicted protein [Populus trichocarpa] 0.916 0.858 0.772 0.0
357468627684 mRNA-capping enzyme [Medicago truncatula 0.902 0.847 0.790 0.0
356568041681 PREDICTED: mRNA-capping enzyme-like [Gly 0.905 0.854 0.779 0.0
356520983678 PREDICTED: mRNA-capping enzyme-like [Gly 0.906 0.859 0.757 0.0
225440606677 PREDICTED: mRNA-capping enzyme [Vitis vi 0.900 0.855 0.772 0.0
449460315682 PREDICTED: mRNA-capping enzyme-like [Cuc 0.908 0.856 0.760 0.0
357468629579 mRNA-capping enzyme [Medicago truncatula 0.749 0.832 0.819 0.0
42572335672 mRNA capping enzyme-like protein [Arabid 0.895 0.857 0.692 0.0
>gi|356504293|ref|XP_003520931.1| PREDICTED: mRNA-capping enzyme-like [Glycine max] Back     alignment and taxonomy information
 Score =  944 bits (2439), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/603 (79%), Positives = 527/603 (87%), Gaps = 8/603 (1%)

Query: 1   MIGAMDLNASPLPEEDEDTFEG--HIEEY-AAQERIESGAEILRREREERRRRLKRDRPD 57
           MI AMDLNASP+PEEDED FE   H+EE+   +ERIE+GA+I RREREER+RRLKR+RPD
Sbjct: 1   MIVAMDLNASPVPEEDEDIFEEKIHVEEFHEPEERIETGADIARREREERKRRLKRERPD 60

Query: 58  DRPVHAYQPAMHDQYYQNKNYKSYDRNKLPPGWLDCPPFGQEIGGCIIPSKVPLSEFFND 117
           DRPVH  Q   +DQ +  KN +SYD+++LPPGWLDCP  GQEI  C+IPSKVPL E FND
Sbjct: 61  DRPVHVSQSHAYDQLFHTKNQRSYDKSRLPPGWLDCPSSGQEIC-CMIPSKVPLGESFND 119

Query: 118 CIPPGKRYSFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAV 177
           CIPPGKRYSFKQVIHQ RVLGRKLGLVIDLTNTTRYYP SDLKKE IKHVKIQC+GR++V
Sbjct: 120 CIPPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTTRYYPVSDLKKECIKHVKIQCRGRNSV 179

Query: 178 PDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKK 237
           PDN SVN FVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMI+H+LMR+ SMSV QAIK 
Sbjct: 180 PDNLSVNQFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIIHYLMRAMSMSVTQAIKI 239

Query: 238 FAEVRPPGIYKNEYIEALYTFYHEKRLDSTPCPSTPEWKR--ELDLNGEAVPDDDDDGVP 295
           F+E R PGIYK +YI+ALYTFYHEK+ +   CP TPEWKR  E DLNGEAVPDDDDDGVP
Sbjct: 240 FSEARTPGIYKPDYIDALYTFYHEKKPEMVVCPPTPEWKRSSEFDLNGEAVPDDDDDGVP 299

Query: 296 AAALHENNEVT--MTNDDVLGDEIPNDQQDAFRHFCYQTLKLNFGGRGNMQFPGSHPVSL 353
              L EN+E    MTNDDVLGDEIP DQQDA R FCYQTLKL  G RG+ QFPGSHPVSL
Sbjct: 300 DPDLQENHETDTRMTNDDVLGDEIPTDQQDALRQFCYQTLKLGVGARGHTQFPGSHPVSL 359

Query: 354 NSDNLQLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGE 413
           N DNLQLLRQRYYYATWKADGTRYMMLIT+DGCYLIDR FNFRRVQMRFPCR++N+GLGE
Sbjct: 360 NRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRSFNFRRVQMRFPCRSTNDGLGE 419

Query: 414 KTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPR 473
           KTHHFTLLDGEM+ID LPDS++QERRYLIYDMMAINQ S+IERPFYERWKMLEKEVIEPR
Sbjct: 420 KTHHFTLLDGEMVIDTLPDSQKQERRYLIYDMMAINQVSIIERPFYERWKMLEKEVIEPR 479

Query: 474 NYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDD 533
           N+ERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTV KLLKEFI +LSH+ADGL+FQGWDD
Sbjct: 480 NHERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVTKLLKEFIKRLSHEADGLIFQGWDD 539

Query: 534 PYVPRTHEGLLKWKYARMNSVDFLFEVTDDDRQLLYVFERGKKKLMEGSSVEFTGSFSSQ 593
           PY+PRTHEGLLKWKYA +NSVDFLFEV D DR+LL++ ERGKKKL+EG+ VEFT      
Sbjct: 540 PYIPRTHEGLLKWKYAYLNSVDFLFEVVDGDRELLFLNERGKKKLLEGNRVEFTDGSDPS 599

Query: 594 LTS 596
           L S
Sbjct: 600 LYS 602

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356496154|ref|XP_003516935.1| PREDICTED: mRNA-capping enzyme-like [Glycine max] Back     alignment and taxonomy information
>gi|224087675|ref|XP_002308205.1| predicted protein [Populus trichocarpa] gi|222854181|gb|EEE91728.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357468627|ref|XP_003604598.1| mRNA-capping enzyme [Medicago truncatula] gi|355505653|gb|AES86795.1| mRNA-capping enzyme [Medicago truncatula] Back     alignment and taxonomy information
>gi|356568041|ref|XP_003552222.1| PREDICTED: mRNA-capping enzyme-like [Glycine max] Back     alignment and taxonomy information
>gi|356520983|ref|XP_003529138.1| PREDICTED: mRNA-capping enzyme-like [Glycine max] Back     alignment and taxonomy information
>gi|225440606|ref|XP_002277969.1| PREDICTED: mRNA-capping enzyme [Vitis vinifera] gi|297740251|emb|CBI30433.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449460315|ref|XP_004147891.1| PREDICTED: mRNA-capping enzyme-like [Cucumis sativus] gi|449506444|ref|XP_004162751.1| PREDICTED: mRNA-capping enzyme-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357468629|ref|XP_003604599.1| mRNA-capping enzyme [Medicago truncatula] gi|355505654|gb|AES86796.1| mRNA-capping enzyme [Medicago truncatula] Back     alignment and taxonomy information
>gi|42572335|ref|NP_974263.1| mRNA capping enzyme-like protein [Arabidopsis thaliana] gi|332641202|gb|AEE74723.1| mRNA capping enzyme-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query643
TAIR|locus:2095284672 AT3G09100 [Arabidopsis thalian 0.895 0.857 0.661 1.6e-214
TAIR|locus:2150154657 AT5G01290 [Arabidopsis thalian 0.875 0.856 0.637 5.9e-199
TAIR|locus:2147575625 AT5G28210 [Arabidopsis thalian 0.758 0.780 0.559 7.9e-149
UNIPROTKB|E1C254600 RNGTT "Uncharacterized protein 0.713 0.765 0.361 8e-69
UNIPROTKB|E2R9G2597 RNGTT "Uncharacterized protein 0.709 0.763 0.344 2.1e-68
UNIPROTKB|Q2KHX7595 RNGTT "RNA guanylyltransferase 0.709 0.766 0.342 7.2e-68
UNIPROTKB|O60942597 RNGTT "mRNA-capping enzyme" [H 0.709 0.763 0.342 9.2e-68
UNIPROTKB|Q5TCW7541 RNGTT "mRNA-capping enzyme" [H 0.709 0.842 0.342 9.2e-68
RGD|1311410597 Rngtt "RNA guanylyltransferase 0.709 0.763 0.344 9.2e-68
MGI|MGI:1329041597 Rngtt "RNA guanylyltransferase 0.709 0.763 0.342 1.5e-67
TAIR|locus:2095284 AT3G09100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2073 (734.8 bits), Expect = 1.6e-214, P = 1.6e-214
 Identities = 394/596 (66%), Positives = 458/596 (76%)

Query:     1 MIGAMDLNASPLPEEDEDTFEGHIEEYAAQ-ERIESGAEIXXXXXXXXXXXXXXXXXXXX 59
             M+  MDLNASP PEED++ +  H+E+Y+++ ERIES  EI                    
Sbjct:     1 MVATMDLNASPQPEEDDEPYVRHLEDYSSRDERIESAVEIARREREERKKRMRYDKPT-- 58

Query:    60 XVHAYQPAMHDQYYQNKNYKSYDRNKLPPGWLDCPPFGQEIGGCIIPSKVPLSEFFNDCI 119
               H  QP   DQYYQN+N K+YDR K+P GWLDCPP G EIG  ++PSKVPL+E +N+ +
Sbjct:    59 --HNSQPVFRDQYYQNRNTKAYDRYKIPQGWLDCPPSGNEIG-FLVPSKVPLNESYNNHV 115

Query:   120 PPGKRYSFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPD 179
             PPG RYSFKQVIH  R+ GRKLGLVIDLTNTTRYY T+DLKKEGIKHVKI CKGRDAVPD
Sbjct:   116 PPGSRYSFKQVIHNQRIAGRKLGLVIDLTNTTRYYSTTDLKKEGIKHVKIACKGRDAVPD 175

Query:   180 NASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFA 239
             N SVN FV EV QF+   KHSKKYILVHCTHGHNRTG+MIVH+LMRS  M+V QA+K F+
Sbjct:   176 NVSVNAFVNEVNQFVLNLKHSKKYILVHCTHGHNRTGFMIVHYLMRSGPMNVTQALKIFS 235

Query:   240 EVRPPGIYKNEYIEALYTFYHEKRLDSTPCPSTPEWKR--ELDLNGEXXXXXXXXXXXXX 297
             + RPPGIYK +YI+ALY+FYHE + +S  CPSTPEWKR  ELDLNGE             
Sbjct:   236 DARPPGIYKPDYIDALYSFYHEIKPESVICPSTPEWKRSTELDLNGEALPDDEDDDGGPA 295

Query:   298 X----LHENN---EVTMTNDDVLGDEIPNDQQDAFRHFCYQTLKLNFGGRGNMQFPGSHP 350
                    E +   +V M+NDDVLGDEIP DQ++ +R F Y+ L LN GGRG  QFPGSHP
Sbjct:   296 GPVQGFQEESHQVDVKMSNDDVLGDEIPPDQEEGYRQFFYRMLSLNIGGRGCSQFPGSHP 355

Query:   351 VSLNSDNLQLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEG 410
             VSLN +NLQLLRQRYYYATWKADGTRYMML+T DGCY++DR F FRRVQMRFP R+  EG
Sbjct:   356 VSLNRENLQLLRQRYYYATWKADGTRYMMLLTTDGCYIVDRSFRFRRVQMRFPFRHPTEG 415

Query:   411 LGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVI 470
             + +K HHFTLLDGEMIID LPD ++QERRYLIYDM+AIN  SV+ERPFYERWKMLEKEVI
Sbjct:   416 ISDKVHHFTLLDGEMIIDTLPDKQKQERRYLIYDMVAINGQSVVERPFYERWKMLEKEVI 475

Query:   471 EPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQG 530
             +PRN+E+     +R+  YRYDLEPFRVRRKDFWLLS V K+LK FIP LSH+ADGL+FQG
Sbjct:   476 DPRNHEK-----ARSHIYRYDLEPFRVRRKDFWLLSAVEKVLKGFIPSLSHEADGLIFQG 530

Query:   531 WDDPYVPRTHEGLLKWKYARMNSVDFLFEVTDDDRQLLYVFERGKKKLMEGSSVEF 586
             WDDPYVPRTHEGLLKWKY  MNSVDFL+E  +  R +L +FERGKKK M+G+SV F
Sbjct:   531 WDDPYVPRTHEGLLKWKYPEMNSVDFLYEQDESGRGMLSLFERGKKKHMDGNSVVF 586
GO:0003910 "DNA ligase (ATP) activity" evidence=IEA
GO:0004484 "mRNA guanylyltransferase activity" evidence=IEA;ISS
GO:0004651 "polynucleotide 5'-phosphatase activity" evidence=IEA
GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0006281 "DNA repair" evidence=IEA
GO:0006310 "DNA recombination" evidence=IEA
GO:0006370 "7-methylguanosine mRNA capping" evidence=IEA;ISS
GO:0006397 "mRNA processing" evidence=IEA;ISS
GO:0006470 "protein dephosphorylation" evidence=IEA
GO:0008138 "protein tyrosine/serine/threonine phosphatase activity" evidence=IEA
GO:0016311 "dephosphorylation" evidence=IEA
GO:0016791 "phosphatase activity" evidence=IEA
GO:0009506 "plasmodesma" evidence=IDA
GO:0008284 "positive regulation of cell proliferation" evidence=RCA
TAIR|locus:2150154 AT5G01290 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2147575 AT5G28210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1C254 RNGTT "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2R9G2 RNGTT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KHX7 RNGTT "RNA guanylyltransferase and 5'-phosphatase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|O60942 RNGTT "mRNA-capping enzyme" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5TCW7 RNGTT "mRNA-capping enzyme" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1311410 Rngtt "RNA guanylyltransferase and 5'-phosphatase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1329041 Rngtt "RNA guanylyltransferase and 5'-phosphatase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.30.691
3rd Layer2.7.7LOW CONFIDENCE prediction!
3rd Layer3.1.3.16LOW CONFIDENCE prediction!
3rd Layer3.1.3.33LOW CONFIDENCE prediction!
4th Layer2.7.7.500.737
3rd Layer3.1.3.48LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query643
cd07895215 cd07895, Adenylation_mRNA_capping, Adenylation dom 7e-86
pfam01331193 pfam01331, mRNA_cap_enzyme, mRNA capping enzyme, c 1e-81
COG5226404 COG5226, CEG1, mRNA capping enzyme, guanylyltransf 3e-38
cd06846182 cd06846, Adenylation_DNA_ligase_like, Adenylation 8e-13
smart00195138 smart00195, DSPc, Dual specificity phosphatase, ca 1e-10
pfam00782131 pfam00782, DSPc, Dual specificity phosphatase, cat 1e-08
cd00127139 cd00127, DSPc, Dual specificity phosphatases (DSP) 1e-07
pfam03919105 pfam03919, mRNA_cap_C, mRNA capping enzyme, C-term 3e-05
COG2453180 COG2453, CDC14, Predicted protein-tyrosine phospha 2e-04
>gnl|CDD|185706 cd07895, Adenylation_mRNA_capping, Adenylation domain of GTP-dependent mRNA capping enzymes Back     alignment and domain information 
 Score =  267 bits (684), Expect = 7e-86
 Identities = 96/212 (45%), Positives = 123/212 (58%), Gaps = 12/212 (5%)

Query: 338 GGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITI-DGCYLIDRCFNFR 396
            G     FPGS PVS +  NL+LL+Q  Y+   K+DG RY++LIT     YLIDR  +  
Sbjct: 15  PGWERGGFPGSQPVSFSRKNLELLKQNDYFVCEKSDGVRYLLLITGRGEVYLIDRKNDVF 74

Query: 397 RVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIER 456
           +V   F  R  N    E  H  TLLDGE++IDK+P    +  RYLI+D++A N  SV E+
Sbjct: 75  KVPGLFFPRRKNL---EPHHQGTLLDGELVIDKVPGK--KRPRYLIFDILAFNGQSVTEK 129

Query: 457 PFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFI 516
           P  ER K ++KEVIEPRN                  EPF VR KDF+ L  + KL ++ I
Sbjct: 130 PLSERLKYIKKEVIEPRNELLKK------GPIDKAKEPFSVRLKDFFPLYKIEKLFEKII 183

Query: 517 PKLSHDADGLVFQGWDDPYVPRTHEGLLKWKY 548
           PKL H+ DGL+F   D+PYVP T + LLKWK 
Sbjct: 184 PKLPHENDGLIFTPNDEPYVPGTDKNLLKWKP 215

RNA capping enzymes transfer GMP from GTP to the 5'-diphosphate end of nascent mRNAs to form a G(5')ppp(5')RNA cap structure. The RNA cap is found only in eukarya. RNA capping is chemically analogous to the first two steps of polynucleotide ligation. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. Structural studies reveal a shared structure for DNA ligases and capping enzymes, with a common catalytic core composed of an adenylation or nucleotidyltransferase domain and a C-terminal OB-fold domain containing conserved sequence motifs. The adenylation domain binds ATP and contains many active site residues. Length = 215
>gnl|CDD|216438 pfam01331, mRNA_cap_enzyme, mRNA capping enzyme, catalytic domain Back     alignment and domain information
>gnl|CDD|227551 COG5226, CEG1, mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|185704 cd06846, Adenylation_DNA_ligase_like, Adenylation domain of proteins similar to ATP-dependent polynucleotide ligases Back     alignment and domain information
>gnl|CDD|214551 smart00195, DSPc, Dual specificity phosphatase, catalytic domain Back     alignment and domain information
>gnl|CDD|216117 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain Back     alignment and domain information
>gnl|CDD|238073 cd00127, DSPc, Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases Back     alignment and domain information
>gnl|CDD|217793 pfam03919, mRNA_cap_C, mRNA capping enzyme, C-terminal domain Back     alignment and domain information
>gnl|CDD|225297 COG2453, CDC14, Predicted protein-tyrosine phosphatase [Signal transduction mechanisms] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 643
KOG2386393 consensus mRNA capping enzyme, guanylyltransferase 100.0
COG5226404 CEG1 mRNA capping enzyme, guanylyltransferase (alp 100.0
PF01331192 mRNA_cap_enzyme: mRNA capping enzyme, catalytic do 100.0
cd07895215 Adenylation_mRNA_capping Adenylation domain of GTP 100.0
cd06846182 Adenylation_DNA_ligase_like Adenylation domain of 99.95
KOG1719183 consensus Dual specificity phosphatase [Defense me 99.93
cd07898201 Adenylation_DNA_ligase Adenylation domain of ATP-d 99.91
PTZ00242166 protein tyrosine phosphatase; Provisional 99.9
PTZ00393241 protein tyrosine phosphatase; Provisional 99.89
cd07903225 Adenylation_DNA_ligase_IV Adenylation domain of DN 99.89
cd07897207 Adenylation_DNA_ligase_Bac1 Adenylation domain of 99.87
KOG1720225 consensus Protein tyrosine phosphatase CDC14 [Defe 99.86
cd07906190 Adenylation_DNA_ligase_LigD_LigC Adenylation domai 99.86
cd07901207 Adenylation_DNA_ligase_Arch_LigB Adenylation domai 99.85
cd09232186 Snurportin-1_C C-terminal m3G cap-binding domain o 99.85
cd07905194 Adenylation_DNA_ligase_LigC Adenylation domain of 99.85
cd07900219 Adenylation_DNA_ligase_I_Euk Adenylation domain of 99.85
cd08039235 Adenylation_DNA_ligase_Fungal Adenylation domain o 99.84
TIGR02779298 NHEJ_ligase_lig DNA polymerase LigD, ligase domain 99.83
PRK09247539 ATP-dependent DNA ligase; Validated 99.83
PRK07636275 ligB ATP-dependent DNA ligase; Reviewed 99.83
PRK08224350 ligC ATP-dependent DNA ligase; Reviewed 99.83
cd07902213 Adenylation_DNA_ligase_III Adenylation domain of D 99.82
TIGR00574514 dnl1 DNA ligase I, ATP-dependent (dnl1). All prote 99.82
smart00195138 DSPc Dual specificity phosphatase, catalytic domai 99.81
PF00782133 DSPc: Dual specificity phosphatase, catalytic doma 99.81
PRK03180508 ligB ATP-dependent DNA ligase; Reviewed 99.79
PF01068202 DNA_ligase_A_M: ATP dependent DNA ligase domain; I 99.79
PLN03113744 DNA ligase 1; Provisional 99.78
PHA02587488 30 DNA ligase; Provisional 99.77
PRK01109590 ATP-dependent DNA ligase; Provisional 99.77
PRK09632764 ATP-dependent DNA ligase; Reviewed 99.77
PRK05972 860 ligD ATP-dependent DNA ligase; Reviewed 99.76
PRK09633 610 ligD ATP-dependent DNA ligase; Reviewed 99.76
COG1793444 CDC9 ATP-dependent DNA ligase [DNA replication, re 99.75
PHA00454315 ATP-dependent DNA ligase 99.75
KOG1718198 consensus Dual specificity phosphatase [Defense me 99.75
cd00127139 DSPc Dual specificity phosphatases (DSP); Ser/Thr 99.74
cd07896174 Adenylation_kDNA_ligase_like Adenylation domain of 99.7
KOG1717343 consensus Dual specificity phosphatase [Defense me 99.68
PRK12361547 hypothetical protein; Provisional 99.67
PRK09125282 DNA ligase; Provisional 99.67
KOG1716285 consensus Dual specificity phosphatase [Defense me 99.64
KOG2836173 consensus Protein tyrosine phosphatase IVA1 [Signa 99.63
KOG0966 881 consensus ATP-dependent DNA ligase IV [Replication 99.56
KOG2386393 consensus mRNA capping enzyme, guanylyltransferase 99.5
KOG2283434 consensus Clathrin coat dissociation kinase GAK/PT 99.47
COG2453180 CDC14 Predicted protein-tyrosine phosphatase [Sign 99.44
TIGR02776 552 NHEJ_ligase_prk DNA ligase D. Members of this prot 99.4
PF03162164 Y_phosphatase2: Tyrosine phosphatase family; Inter 99.26
KOG0967714 consensus ATP-dependent DNA ligase I [Replication, 99.21
PF03919105 mRNA_cap_C: mRNA capping enzyme, C-terminal domain 99.19
PF05706168 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3) 99.17
smart00012105 PTPc_DSPc Protein tyrosine phosphatase, catalytic 99.08
smart00404105 PTPc_motif Protein tyrosine phosphatase, catalytic 99.08
cd07894342 Adenylation_RNA_ligase Adenylation domain of RNA c 99.01
TIGR01244135 conserved hypothetical protein TIGR01244. No membe 98.94
cd00047231 PTPc Protein tyrosine phosphatases (PTP) catalyze 98.81
PRK15375535 pathogenicity island 1 effector protein StpP; Prov 98.73
PLN02727 986 NAD kinase 98.7
smart00194258 PTPc Protein tyrosine phosphatase, catalytic domai 98.66
PF14566149 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1 98.33
PF04273110 DUF442: Putative phosphatase (DUF442); InterPro: I 98.32
PHA02740298 protein tyrosine phosphatase; Provisional 98.31
PF13350164 Y_phosphatase3: Tyrosine phosphatase family; PDB: 98.26
PHA02742303 protein tyrosine phosphatase; Provisional 98.25
PF00102235 Y_phosphatase: Protein-tyrosine phosphatase; Inter 98.25
PHA02747312 protein tyrosine phosphatase; Provisional 98.23
KOG1572249 consensus Predicted protein tyrosine phosphatase [ 98.22
PHA02746323 protein tyrosine phosphatase; Provisional 98.19
PHA02738320 hypothetical protein; Provisional 98.01
KOG0790600 consensus Protein tyrosine phosphatase Corkscrew a 97.94
COG2365249 Protein tyrosine/serine phosphatase [Signal transd 97.94
COG3453130 Uncharacterized protein conserved in bacteria [Fun 97.75
KOG3132325 consensus m3G-cap-specific nuclear import receptor 97.68
KOG07921144 consensus Protein tyrosine phosphatase PTPMEG, con 97.66
COG5599302 PTP2 Protein tyrosine phosphatase [Signal transduc 97.59
KOG0791374 consensus Protein tyrosine phosphatase, contains f 97.37
TIGR01209374 RNA ligase, Pab1020 family. Members of this family 97.11
COG5350172 Predicted protein tyrosine phosphatase [General fu 97.09
KOG0789415 consensus Protein tyrosine phosphatase [Signal tra 97.07
PF14671141 DSPn: Dual specificity protein phosphatase, N-term 96.3
KOG07931004 consensus Protein tyrosine phosphatase [Signal tra 96.0
COG1423382 ATP-dependent DNA ligase, homolog of eukaryotic li 95.47
KOG42281087 consensus Protein tyrosine phosphatase [Signal tra 95.03
PF01653315 DNA_ligase_aden: NAD-dependent DNA ligase adenylat 95.02
KOG42281087 consensus Protein tyrosine phosphatase [Signal tra 94.1
PF04179451 Init_tRNA_PT: Initiator tRNA phosphoribosyl transf 93.79
smart00532441 LIGANc Ligase N family. 93.22
cd00114307 LIGANc NAD+ dependent DNA ligase adenylation domai 92.88
KOG3673845 consensus FtsJ-like RNA methyltransferase [RNA pro 92.51
PRK07956 665 ligA NAD-dependent DNA ligase LigA; Validated 90.61
TIGR00575 652 dnlj DNA ligase, NAD-dependent. The member of this 89.75
PHA02142366 putative RNA ligase 89.7
PF09414186 RNA_ligase: RNA ligase; InterPro: IPR021122 This e 88.92
PRK14351 689 ligA NAD-dependent DNA ligase LigA; Provisional 88.49
PRK14350 669 ligA NAD-dependent DNA ligase LigA; Provisional 88.16
PRK08097 562 ligB NAD-dependent DNA ligase LigB; Reviewed 86.18
cd01518101 RHOD_YceA Member of the Rhodanese Homology Domain 81.55
PLN02160136 thiosulfate sulfurtransferase 80.49
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=2.9e-59  Score=493.20  Aligned_cols=378  Identities=40%  Similarity=0.651  Sum_probs=308.9

Q ss_pred             CCCCCCCCCccCCCCCCc-ccCceeecCCCCccccccCCCCCC-CCCHHHHHHHHHHcCCCeeEEEEcCCCCCCCCcchh
Q 006504           82 DRNKLPPGWLDCPPFGQE-IGGCIIPSKVPLSEFFNDCIPPGK-RYSFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDL  159 (643)
Q Consensus        82 ~~~~~p~~W~~~~~~g~~-I~~~flp~K~PL~~~~~~~v~~~~-r~~~~~l~~~~~~~~~~I~~VIdLt~~~~~Yd~~~~  159 (643)
                      ....+|++|++||+.|++ +.++|||+|+||++.++.++++++ +|++.+++++++.++..||+|||||++.+||+..++
T Consensus         3 ~~~~lp~~w~~~p~~G~~~~~~rfi~~K~pL~~~~~~k~~~~~~~f~~~dl~~~l~~~~~~vgl~iDltnt~ryy~~~~~   82 (393)
T KOG2386|consen    3 APGELPPRWLDCPPVGAVIDDTRFIPFKTPLNSSYSTKTFPGSQRFQPKDLFELLKEHNYKVGLKIDLTNTLRYYDKPEL   82 (393)
T ss_pred             CcccCCcccccCCCCCCccccceEEEEecccCCCCCcCCCCCccccCHHHHHHHHHhcCceEEEEEeccceeeeeccccc
Confidence            345899999999999997 468999999999999999999999 999999999999999999999999999999999999


Q ss_pred             hcCCcEEEEEeccCCCCCCCHHHHHHHHHHHHHHHHhhccCCceEEEEcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHH
Q 006504          160 KKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFA  239 (643)
Q Consensus       160 ~~~GI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~nRTG~li~aYLm~~~~~s~~eAi~~~~  239 (643)
                      +..|+.|+++.|.|++.+|+.+.+..|++.+..|....+.+++.|+|||+||+||||+|||+|||...+|+..+|++.|+
T Consensus        83 ~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~aik~f~  162 (393)
T KOG2386|consen   83 EERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIKRFA  162 (393)
T ss_pred             cccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEeCCCcccccceeeeeeeeeccCccHHHHHHHHH
Confidence            99999999999999999999999999999999999988899999999999999999999999999999999999999999


Q ss_pred             hcCCCCcCCHHHHHHHHHHHhhcCCCCCCCCCCCccccccccC--CCCCCCCCCCCCcc--cccc--cccc-ccccCCCC
Q 006504          240 EVRPPGIYKNEYIEALYTFYHEKRLDSTPCPSTPEWKRELDLN--GEAVPDDDDDGVPA--AALH--ENNE-VTMTNDDV  312 (643)
Q Consensus       240 ~~Rp~~i~~~~~l~~L~~~y~~~~~~~~~~p~~P~W~~~~~~~--~~~~~d~~~~~~~~--~~~~--~~~~-~~~~~~~v  312 (643)
                      .+||++|++++|+.+|+.+|++..+..+.+|..|.|+.+...+  .+.+.++|+...+.  .|..  ++.+ ..+.++.+
T Consensus       163 ~~r~~gi~k~dyi~~L~~~~~~~~p~~vs~p~~~~~~~~~~~~~~~~~~~~~Dg~i~t~~~~pg~~~g~~~~~~k~k~~~  242 (393)
T KOG2386|consen  163 DARPPGIEKQDYIDALYSRYHDIFPFKVSCPSMPDWKRSIKLKKPVHKLHGNDGLIFTPAEIPGSKNGKQEALLKWKPFS  242 (393)
T ss_pred             HhCCCccCchHHHHHHhhcccccccccccCCCCcchhhhhhhccccccccccCCCcCCcccCccccccchhhhhcCCchh
Confidence            9999999999999999999999997789999999999954332  22222222221111  1221  1111 11222333


Q ss_pred             CCCccChhhHHHHHHHHHHhhcccCCCCCCCCCCCCccccccccchhhhhcCCeEEeEecCceEEEEEEECCE-EEEEeC
Q 006504          313 LGDEIPNDQQDAFRHFCYQTLKLNFGGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITIDG-CYLIDR  391 (643)
Q Consensus       313 ~G~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~FPG~qPVSl~r~nl~~l~~~~Y~Vs~K~DG~R~llli~~~~-vyLidR  391 (643)
                      +|+.++..+...-|..++.+..      ....+ |+||||  |.|++++....|.++||+||+|||||+++++ +|++||
T Consensus       243 ~n~~~~~~~~~~~q~~~~~l~~------~~~~~-g~~~~~--r~~~~~~~~~~y~~~We~dg~~~~~L~~~~~~~~~~dR  313 (393)
T KOG2386|consen  243 LNTIDFGVKLEKPQPELGDLQC------KRKNE-GAQPVS--RENYKLLVFEYYEASWEADGTRYMMLIDGDGEYYDFDR  313 (393)
T ss_pred             cCCcccceeecCCCCCccchhh------hhccc-ccCCcc--ccchhhhhhhhhhhhhcccCcEEEEEecCCceeEechh
Confidence            3433332222222333333331      11334 999999  9999999999999999999999999999876 788888


Q ss_pred             CCc-cccccccCCCcCCcccccccCCCCeeeeEEEEEecCCCCCccceEEEEEEEeecCCccccCCCHHHHHHHHHHHhc
Q 006504          392 CFN-FRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVI  470 (643)
Q Consensus       392 ~~~-~~~v~~~FP~~~~~~~l~~~~~~~TlLDGElV~d~~~~~~~~~~~yliFDil~~~G~~l~~~pf~eRl~~L~~~I~  470 (643)
                      .+. +..-+++||.....    ...+..||+||||++|+.....  .++|++||++.+|++.+...||. |++++.++|+
T Consensus       314 ~~~~~~~~~~~~~~~~~~----~~~~~~tl~dge~~lD~l~~~~--~~r~l~Yd~~r~n~~~v~~~~f~-r~~~~~~evi  386 (393)
T KOG2386|consen  314 WRFVKGRENLRKIREDSD----TKVLHQTLLDGEMILDRLKEEA--IPRYLIYDMVRFNSQKVEKRPFS-RWQIIEKEVI  386 (393)
T ss_pred             hhHHHhhhhhhccccccc----chhhhhhhcccceecccccccc--chhheeeeeeeccCcccccCcch-HHHHHHHHhc
Confidence            765 44446777654332    1345889999999999876554  78999999999999999999999 9999999999


Q ss_pred             Ccccc
Q 006504          471 EPRNY  475 (643)
Q Consensus       471 ~p~~~  475 (643)
                      +|+..
T Consensus       387 ~~r~~  391 (393)
T KOG2386|consen  387 DPREL  391 (393)
T ss_pred             Cchhc
Confidence            99854

>COG5226 CEG1 mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification] Back     alignment and domain information
>PF01331 mRNA_cap_enzyme: mRNA capping enzyme, catalytic domain; InterPro: IPR001339 The mRNA capping enzyme in yeasts is composed of two separate chains, alpha a mRNA guanyltransferase and beta an RNA 5'-triphosphate Back     alignment and domain information
>cd07895 Adenylation_mRNA_capping Adenylation domain of GTP-dependent mRNA capping enzymes Back     alignment and domain information
>cd06846 Adenylation_DNA_ligase_like Adenylation domain of proteins similar to ATP-dependent polynucleotide ligases Back     alignment and domain information
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms] Back     alignment and domain information
>cd07898 Adenylation_DNA_ligase Adenylation domain of ATP-dependent DNA Ligases Back     alignment and domain information
>PTZ00242 protein tyrosine phosphatase; Provisional Back     alignment and domain information
>PTZ00393 protein tyrosine phosphatase; Provisional Back     alignment and domain information
>cd07903 Adenylation_DNA_ligase_IV Adenylation domain of DNA Ligase IV Back     alignment and domain information
>cd07897 Adenylation_DNA_ligase_Bac1 Adenylation domain of putative bacterial ATP-dependent DNA ligases Back     alignment and domain information
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms] Back     alignment and domain information
>cd07906 Adenylation_DNA_ligase_LigD_LigC Adenylation domain of Mycobacterium tuberculosis LigD and LigC-like ATP-dependent DNA ligases Back     alignment and domain information
>cd07901 Adenylation_DNA_ligase_Arch_LigB Adenylation domain of archaeal and bacterial LigB-like DNA ligases Back     alignment and domain information
>cd09232 Snurportin-1_C C-terminal m3G cap-binding domain of nuclear import adaptor snurportin-1 Back     alignment and domain information
>cd07905 Adenylation_DNA_ligase_LigC Adenylation domain of Mycobacterium tuberculosis LigC-like ATP-dependent DNA ligases Back     alignment and domain information
>cd07900 Adenylation_DNA_ligase_I_Euk Adenylation domain of eukaryotic DNA Ligase I Back     alignment and domain information
>cd08039 Adenylation_DNA_ligase_Fungal Adenylation domain of uncharacterized fungal ATP-dependent DNA ligase-like proteins Back     alignment and domain information
>TIGR02779 NHEJ_ligase_lig DNA polymerase LigD, ligase domain Back     alignment and domain information
>PRK09247 ATP-dependent DNA ligase; Validated Back     alignment and domain information
>PRK07636 ligB ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>PRK08224 ligC ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>cd07902 Adenylation_DNA_ligase_III Adenylation domain of DNA Ligase III Back     alignment and domain information
>TIGR00574 dnl1 DNA ligase I, ATP-dependent (dnl1) Back     alignment and domain information
>smart00195 DSPc Dual specificity phosphatase, catalytic domain Back     alignment and domain information
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity Back     alignment and domain information
>PRK03180 ligB ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>PF01068 DNA_ligase_A_M: ATP dependent DNA ligase domain; InterPro: IPR012310 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose Back     alignment and domain information
>PLN03113 DNA ligase 1; Provisional Back     alignment and domain information
>PHA02587 30 DNA ligase; Provisional Back     alignment and domain information
>PRK01109 ATP-dependent DNA ligase; Provisional Back     alignment and domain information
>PRK09632 ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>PRK05972 ligD ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>PRK09633 ligD ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>COG1793 CDC9 ATP-dependent DNA ligase [DNA replication, recombination, and repair] Back     alignment and domain information
>PHA00454 ATP-dependent DNA ligase Back     alignment and domain information
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms] Back     alignment and domain information
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases Back     alignment and domain information
>cd07896 Adenylation_kDNA_ligase_like Adenylation domain of kDNA ligases and similar proteins Back     alignment and domain information
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms] Back     alignment and domain information
>PRK12361 hypothetical protein; Provisional Back     alignment and domain information
>PRK09125 DNA ligase; Provisional Back     alignment and domain information
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms] Back     alignment and domain information
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair] Back     alignment and domain information
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification] Back     alignment and domain information
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02776 NHEJ_ligase_prk DNA ligase D Back     alignment and domain information
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity Back     alignment and domain information
>KOG0967 consensus ATP-dependent DNA ligase I [Replication, recombination and repair] Back     alignment and domain information
>PF03919 mRNA_cap_C: mRNA capping enzyme, C-terminal domain; InterPro: IPR013846 This domain is found at the C terminus of the mRNA capping enzyme Back     alignment and domain information
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species Back     alignment and domain information
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity Back     alignment and domain information
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif Back     alignment and domain information
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins Back     alignment and domain information
>TIGR01244 conserved hypothetical protein TIGR01244 Back     alignment and domain information
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways Back     alignment and domain information
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional Back     alignment and domain information
>PLN02727 NAD kinase Back     alignment and domain information
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain Back     alignment and domain information
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B Back     alignment and domain information
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function Back     alignment and domain information
>PHA02740 protein tyrosine phosphatase; Provisional Back     alignment and domain information
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B Back     alignment and domain information
>PHA02742 protein tyrosine phosphatase; Provisional Back     alignment and domain information
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity Back     alignment and domain information
>PHA02747 protein tyrosine phosphatase; Provisional Back     alignment and domain information
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms] Back     alignment and domain information
>PHA02746 protein tyrosine phosphatase; Provisional Back     alignment and domain information
>PHA02738 hypothetical protein; Provisional Back     alignment and domain information
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms] Back     alignment and domain information
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG3132 consensus m3G-cap-specific nuclear import receptor (Snurportin1) [RNA processing and modification] Back     alignment and domain information
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms] Back     alignment and domain information
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms] Back     alignment and domain information
>TIGR01209 RNA ligase, Pab1020 family Back     alignment and domain information
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only] Back     alignment and domain information
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A Back     alignment and domain information
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>COG1423 ATP-dependent DNA ligase, homolog of eukaryotic ligase III [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PF01653 DNA_ligase_aden: NAD-dependent DNA ligase adenylation domain; InterPro: IPR013839 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalyzing the formation of an internucleotide ester bond between phosphate and deoxyribose Back     alignment and domain information
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2 Back     alignment and domain information
>smart00532 LIGANc Ligase N family Back     alignment and domain information
>cd00114 LIGANc NAD+ dependent DNA ligase adenylation domain Back     alignment and domain information
>KOG3673 consensus FtsJ-like RNA methyltransferase [RNA processing and modification] Back     alignment and domain information
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated Back     alignment and domain information
>TIGR00575 dnlj DNA ligase, NAD-dependent Back     alignment and domain information
>PHA02142 putative RNA ligase Back     alignment and domain information
>PF09414 RNA_ligase: RNA ligase; InterPro: IPR021122 This entry represents the RNA ligase domain Back     alignment and domain information
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional Back     alignment and domain information
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional Back     alignment and domain information
>PRK08097 ligB NAD-dependent DNA ligase LigB; Reviewed Back     alignment and domain information
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily Back     alignment and domain information
>PLN02160 thiosulfate sulfurtransferase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query643
2c46_A241 Crystal Structure Of The Human Rna Guanylyltransfer 9e-37
1i9s_A210 Crystal Structure Of The Rna Triphosphatase Domain 4e-36
1i9t_A210 Crystal Structure Of The Oxidized Rna Triphosphatas 6e-35
3rtx_A343 Crystal Structure Of Mammalian Capping Enzyme (Mce1 9e-31
3s24_A347 Crystal Structure Of Human Mrna Guanylyltransferase 3e-30
3kyh_C 461 Saccharomyces Cerevisiae Cet1-Ceg1 Capping Apparatu 3e-23
1p16_A395 Structure Of An Mrna Capping Enzyme Bound To The Ph 2e-22
1yn9_A169 Crystal Structure Of Baculovirus Rna 5'-Phosphatase 9e-15
1ckm_A330 Structure Of Two Different Conformations Of Mrna Ca 4e-08
1ckn_B330 Structure Of Guanylylated Mrna Capping Enzyme Compl 2e-07
3rgo_A157 Crystal Structure Of Ptpmt1 Length = 157 3e-04
>pdb|2C46|A Chain A, Crystal Structure Of The Human Rna Guanylyltransferase And 5'-Phosphatase Length = 241 Back     alignment and structure 
Iteration: 1

 Score =  151 bits (382), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 72/190 (37%), Positives = 114/190 (60%), Gaps = 2/190 (1%)
Query: 70  DQYYQNKNYKSYDRNKLPPGWLDCPPFGQEIGGCIIPSKVPLSEFFNDCIPPGKRYSFKQ 129
           D   +N  ++S   NK+PP WL+CP  GQ + G  +P K  L   ++  +    R+    
Sbjct: 12  DLGTENLYFQSMAHNKIPPRWLNCPRRGQPVAGRFLPLKTMLGPRYDSQVAEENRFHPSM 71
Query: 130 VIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYE 189
           + + L+ L  K+GL++DLTNT+R+Y  +D++KEGIK++K+QCKG    P   +   F+  
Sbjct: 72  LSNYLKSLKVKMGLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRL 131
Query: 190 VTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKN 249
             +F   +++  + I VHCTHG NRTG++I  FL+     S+  A+  FA+ RPPGIYK 
Sbjct: 132 CERF--NERNPPELIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKG 189
Query: 250 EYIEALYTFY 259
           +Y++ L+  Y
Sbjct: 190 DYLKELFRRY 199
>pdb|1I9S|A Chain A, Crystal Structure Of The Rna Triphosphatase Domain Of Mouse Mrna Capping Enzyme Length = 210 Back     alignment and structure
>pdb|1I9T|A Chain A, Crystal Structure Of The Oxidized Rna Triphosphatase Domain Of Mouse Mrna Capping Enzyme Length = 210 Back     alignment and structure
>pdb|3RTX|A Chain A, Crystal Structure Of Mammalian Capping Enzyme (Mce1) And Pol Ii Ctd Complex Length = 343 Back     alignment and structure
>pdb|3S24|A Chain A, Crystal Structure Of Human Mrna Guanylyltransferase Length = 347 Back     alignment and structure
>pdb|3KYH|C Chain C, Saccharomyces Cerevisiae Cet1-Ceg1 Capping Apparatus Length = 461 Back     alignment and structure
>pdb|1P16|A Chain A, Structure Of An Mrna Capping Enzyme Bound To The Phosphorylated Carboxyl-Terminal Domain Of Rna Polymerase Ii Length = 395 Back     alignment and structure
>pdb|1YN9|A Chain A, Crystal Structure Of Baculovirus Rna 5'-Phosphatase Complexed With Phosphate Length = 169 Back     alignment and structure
>pdb|1CKM|A Chain A, Structure Of Two Different Conformations Of Mrna Capping Enzyme In Complex With Gtp Length = 330 Back     alignment and structure
>pdb|1CKN|B Chain B, Structure Of Guanylylated Mrna Capping Enzyme Complexed With Gtp Length = 330 Back     alignment and structure
>pdb|3RGO|A Chain A, Crystal Structure Of Ptpmt1 Length = 157 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query643
2c46_A241 MRNA capping enzyme; phosphatase, transferase, hyd 7e-69
1yn9_A169 BVP, polynucleotide 5'-phosphatase; RNA triphospha 1e-50
1p16_A395 GTP--RNA, mRNA capping enzyme alpha subunit; guany 4e-45
1ckm_A330 MRNA capping enzyme; nucleotidyltransferase; HET: 3e-43
3kyh_C 461 MRNA-capping enzyme subunit alpha; 5' modification 6e-40
3rtx_A343 MRNA-capping enzyme; guanylyltransferase, RNA poly 3e-38
2img_A151 Dual specificity protein phosphatase 23; DUSP23, V 4e-21
1ohe_A348 CDC14B, CDC14B2 phosphatase; protein phosphatase, 9e-18
3s4o_A167 Protein tyrosine phosphatase-like protein; structu 4e-17
3rgo_A157 Protein-tyrosine phosphatase mitochondrial 1; phos 1e-10
2i6j_A161 Ssoptp, sulfolobus solfataricus protein tyrosine p 7e-10
1fpz_A212 Cyclin-dependent kinase inhibitor 3; alpha-beta sa 2e-09
1rxd_A159 Protein tyrosine phosphatase type IVA, member 1; p 3e-09
3rz2_A189 Protein tyrosine phosphatase type IVA 1; tyrosine 4e-08
2j16_A182 SDP-1, tyrosine-protein phosphatase YIL113W; hydro 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
3v0d_A339 Voltage-sensor containing phosphatase; PTP, hydrol 8e-07
1zzw_A149 Dual specificity protein phosphatase 10; MKP, PTP, 8e-06
3nme_A294 Ptpkis1 protein, SEX4 glucan phosphatase; dual spe 9e-06
2nt2_A145 Protein phosphatase slingshot homolog 2; alpha/bet 1e-05
2wgp_A190 Dual specificity protein phosphatase 14; MKP6, DUS 1e-05
2g6z_A211 Dual specificity protein phosphatase 5; alpha/beta 1e-05
3ezz_A144 Dual specificity protein phosphatase 4; alpha/beta 1e-05
3cm3_A176 Late protein H1, dual specificity protein phosphat 1e-05
3emu_A161 Leucine rich repeat and phosphatase domain contain 1e-05
3s4e_A144 Dual specificity protein phosphatase 19; PTP, prot 2e-05
2esb_A188 Dual specificity protein phosphatase 18; alpha/bet 3e-05
2oud_A177 Dual specificity protein phosphatase 10; A central 4e-05
1d5r_A324 Phosphoinositide phosphotase PTEN; C2 domain, phos 4e-05
2hcm_A164 Dual specificity protein phosphatase; structural g 4e-05
1wrm_A165 Dual specificity phosphatase 22; DSP, JNK, hydrola 7e-05
1yz4_A160 DUSP15, dual specificity phosphatase-like 15 isofo 9e-05
2hxp_A155 Dual specificity protein phosphatase 9; human phos 1e-04
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 2e-04
2r0b_A154 Serine/threonine/tyrosine-interacting protein; str 2e-04
2q05_A195 Late protein H1, dual specificity protein phosphat 2e-04
3n0a_A361 Tyrosine-protein phosphatase auxilin; phosphatase- 3e-04
2e0t_A151 Dual specificity phosphatase 26; conserved hypothe 8e-04
>2c46_A MRNA capping enzyme; phosphatase, transferase, hydrolase, mRNA processing, multifunctional enzyme, nucleotidyltransferase; 1.6A {Homo sapiens} PDB: 1i9s_A 1i9t_A Length = 241 Back     alignment and structure
 Score =  223 bits (569), Expect = 7e-69
 Identities = 81/239 (33%), Positives = 132/239 (55%), Gaps = 5/239 (2%)

Query: 62  HAYQPAMHDQYYQNKNYKSYDRNKLPPGWLDCPPFGQEIGGCIIPSKVPLSEFFNDCIPP 121
           H +  +  D   +N  ++S   NK+PP WL+CP  GQ + G  +P K  L   ++  +  
Sbjct: 4   HHHHSSGVDLGTENLYFQSMAHNKIPPRWLNCPRRGQPVAGRFLPLKTMLGPRYDSQVAE 63

Query: 122 GKRYSFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNA 181
             R+    + + L+ L  K+GL++DLTNT+R+Y  +D++KEGIK++K+QCKG    P   
Sbjct: 64  ENRFHPSMLSNYLKSLKVKMGLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTE 123

Query: 182 SVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEV 241
           +   F+    +F  R     + I VHCTHG NRTG++I  FL+     S+  A+  FA+ 
Sbjct: 124 NTETFIRLCERFNERNPP--ELIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQA 181

Query: 242 RPPGIYKNEYIEALYTFYHEKRLDSTPCPSTPEWKRE--LDLNGEAVPDDDDDGVPAAA 298
           RPPGIYK +Y++ L+  Y +   ++ P P  P+W  E   D + +     + +   +A+
Sbjct: 182 RPPGIYKGDYLKELFRRYGDIE-EAPPPPLLPDWCFEDDEDEDEDEDGKKESETGSSAS 239
>1yn9_A BVP, polynucleotide 5'-phosphatase; RNA triphosphatase, cysteine phosphatase, P-loop, hydrolase; HET: PO4; 1.50A {Autographa californicanucleopolyhedrovirus} Length = 169 Back     alignment and structure
>1p16_A GTP--RNA, mRNA capping enzyme alpha subunit; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} SCOP: b.40.4.6 d.142.2.3 Length = 395 Back     alignment and structure
>1ckm_A MRNA capping enzyme; nucleotidyltransferase; HET: GTP; 2.50A {Paramecium bursaria chlorella virus 1} SCOP: b.40.4.6 d.142.2.3 PDB: 1ckn_A* 1cko_A* 1ckn_B* Length = 330 Back     alignment and structure
>3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase, guanylyltransferase, complex, hydrolase, mRNA processing, nucleus; 3.00A {Saccharomyces cerevisiae} Length = 461 Back     alignment and structure
>3rtx_A MRNA-capping enzyme; guanylyltransferase, RNA polymerase II CTD, lysyl-N-GMP, NUC mRNA capping, transferase; HET: SEP GUN; 2.81A {Mus musculus} PDB: 3s24_A Length = 343 Back     alignment and structure
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual specicity protein phosphatase 23, DUS23_human, malate, structural genomics, PSI; 1.93A {Homo sapiens} Length = 151 Back     alignment and structure
>1ohe_A CDC14B, CDC14B2 phosphatase; protein phosphatase, cell cycle, hydrolase; HET: SEP; 2.20A {Homo sapiens} SCOP: c.45.1.1 c.45.1.1 PDB: 1ohc_A 1ohd_A Length = 348 Back     alignment and structure
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics, medical structural genomics of pathogen protozoa, MSGPP, unknown function; HET: MSE EPE; 2.30A {Leishmania major} Length = 167 Back     alignment and structure
>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus musculus} PDB: 3rgq_A* Length = 157 Back     alignment and structure
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB: 2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A* Length = 161 Back     alignment and structure
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich, hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB: 1fq1_A* Length = 212 Back     alignment and structure
>1rxd_A Protein tyrosine phosphatase type IVA, member 1; protein tyrosine phosphatase IVA1...; structural genomics, NYSGXRC, unknown function, PSI; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1xm2_A 1zck_A 1r6h_A 1v3a_A Length = 159 Back     alignment and structure
>3rz2_A Protein tyrosine phosphatase type IVA 1; tyrosine phosphatase, dual specific phosphatase, COMP with peptide, hydrolase; 2.80A {Rattus norvegicus} PDB: 1x24_A 1zcl_A Length = 189 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3v0d_A Voltage-sensor containing phosphatase; PTP, hydrolase; HET: PO4; 1.10A {Ciona intestinalis} PDB: 3v0f_A* 3v0g_A 3v0h_A* 3awf_A 3v0j_A 3awe_A 3awg_A 3v0e_A 3v0i_A Length = 339 Back     alignment and structure
>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A {Homo sapiens} Length = 149 Back     alignment and structure
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana} Length = 294 Back     alignment and structure
>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase; 2.10A {Homo sapiens} Length = 145 Back     alignment and structure
>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase, dual specifici phosphatase; 1.88A {Homo sapiens} Length = 190 Back     alignment and structure
>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase; 2.70A {Homo sapiens} Length = 211 Back     alignment and structure
>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase, nucleus; 2.90A {Homo sapiens} PDB: 1m3g_A Length = 144 Back     alignment and structure
>3cm3_A Late protein H1, dual specificity protein phosphatase; dual-specificity phosphatase, VH1, hydrolase; 1.32A {Vaccinia virus} PDB: 2rf6_A 2p4d_A Length = 176 Back     alignment and structure
>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica} Length = 161 Back     alignment and structure
>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine phosphatase, hydrolase; 1.26A {Homo sapiens} Length = 144 Back     alignment and structure
>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure, hydrolase; HET: EPE; 2.00A {Homo sapiens} Length = 188 Back     alignment and structure
>2oud_A Dual specificity protein phosphatase 10; A central five-stranded B-sheet, hydrolase; 2.80A {Homo sapiens} Length = 177 Back     alignment and structure
>1d5r_A Phosphoinositide phosphotase PTEN; C2 domain, phosphotidylinositol, hydrolase; HET: TLA; 2.10A {Homo sapiens} SCOP: b.7.1.1 c.45.1.1 Length = 324 Back     alignment and structure
>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Mus musculus} Length = 164 Back     alignment and structure
>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES; 1.50A {Homo sapiens} Length = 165 Back     alignment and structure
>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens} Length = 160 Back     alignment and structure
>2hxp_A Dual specificity protein phosphatase 9; human phosphatase, structural genomics, PSI-2, protein structure initiative; 1.83A {Homo sapiens} PDB: 3lj8_A 1mkp_A Length = 155 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics, phosphatase, PSI-2, protein structure initiative; 1.60A {Homo sapiens} Length = 154 Back     alignment and structure
>2q05_A Late protein H1, dual specificity protein phosphatase; structural genomics, APC7320, P protein structure initiative; HET: MSE; 2.57A {Vaccinia virus WR} Length = 195 Back     alignment and structure
>3n0a_A Tyrosine-protein phosphatase auxilin; phosphatase-like domain, C2 domain, hydrolase; 2.20A {Bos taurus} Length = 361 Back     alignment and structure
>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein, structural genomics, NPPSFA, project on protein structural and functional analyses; 1.67A {Homo sapiens} Length = 151 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 643
d1i9sa_194 c.45.1.1 (A:) mRNA capping enzyme, triphosphatase 1e-51
d1p16a2245 d.142.2.3 (A:1-245) mRNA capping enzyme alpha subu 6e-46
d1ckma2228 d.142.2.3 (A:11-238) RNA guanylyltransferase (mRNA 3e-35
d1ohea2182 c.45.1.1 (A:199-380) Proline directed phosphatase 2e-11
d1fpza_176 c.45.1.1 (A:) Kinase associated phosphatase (kap) 7e-11
d1d5ra2174 c.45.1.1 (A:14-187) Phoshphoinositide phosphatase 3e-10
d1rxda_152 c.45.1.1 (A:) Protein tyrosine phosphatase type IV 3e-10
d1m3ga_145 c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapien 4e-07
d1mkpa_144 c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapien 2e-06
d1vhra_178 c.45.1.1 (A:) VH1-related dual-specificity phospha 2e-05
d2pt0a1313 c.45.1.4 (A:34-346) Myo-inositol hexaphosphate pho 0.002
d1xria_151 c.45.1.1 (A:) Putative phosphatase At1g05000 {Thal 0.004
>d1i9sa_ c.45.1.1 (A:) mRNA capping enzyme, triphosphatase domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 194 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: mRNA capping enzyme, triphosphatase domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  174 bits (443), Expect = 1e-51
 Identities = 72/196 (36%), Positives = 115/196 (58%), Gaps = 3/196 (1%)

Query: 85  KLPPGWLDCPPFGQEIGGCIIPSKVPLSEFFNDCIPPGKRYSFKQVIHQLRVLGRKLGLV 144
           K+PP WL+CP  GQ + G  +P K  L   ++  +    R+    + + L+ L  K+ L+
Sbjct: 1   KIPPRWLNCPRRGQPVAGRFLPLKTMLGPRYDSQVAEENRFHPSMLSNYLKSLKVKMSLL 60

Query: 145 IDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYI 204
           +DLTNT+R+Y  +D++KEGIK++K+QCKG    P   +   F+    +F   ++   + I
Sbjct: 61  VDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLCERFN--ERSPPELI 118

Query: 205 LVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKRL 264
            VHCTHG NRTG++I  FL+     S+  A+  FA+ RPPGIYK +Y++ L+  Y +   
Sbjct: 119 GVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKELFRRYGDIE- 177

Query: 265 DSTPCPSTPEWKRELD 280
           ++ P P  P+W  E +
Sbjct: 178 EAPPPPVLPDWCFEDE 193
>d1p16a2 d.142.2.3 (A:1-245) mRNA capping enzyme alpha subunit {Yeast (Candida albicans) [TaxId: 5476]} Length = 245 Back     information, alignment and structure
>d1ckma2 d.142.2.3 (A:11-238) RNA guanylyltransferase (mRNA capping enzyme), N-terminal domain {Chlorella virus PBCV-1 [TaxId: 10506]} Length = 228 Back     information, alignment and structure
>d1ohea2 c.45.1.1 (A:199-380) Proline directed phosphatase CDC14b2 {Human (Homo sapiens) [TaxId: 9606]} Length = 182 Back     information, alignment and structure
>d1fpza_ c.45.1.1 (A:) Kinase associated phosphatase (kap) {Human (Homo sapiens) [TaxId: 9606]} Length = 176 Back     information, alignment and structure
>d1d5ra2 c.45.1.1 (A:14-187) Phoshphoinositide phosphatase Pten (Pten tumor suppressor), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 174 Back     information, alignment and structure
>d1rxda_ c.45.1.1 (A:) Protein tyrosine phosphatase type IVa {Human (Homo sapiens), pr-1 [TaxId: 9606]} Length = 152 Back     information, alignment and structure
>d1m3ga_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pac-1 [TaxId: 9606]} Length = 145 Back     information, alignment and structure
>d1mkpa_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pyst1 (mkp3) [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d1vhra_ c.45.1.1 (A:) VH1-related dual-specificity phosphatase, VHR {Human (Homo sapiens) [TaxId: 9606]} Length = 178 Back     information, alignment and structure
>d2pt0a1 c.45.1.4 (A:34-346) Myo-inositol hexaphosphate phosphohydrolase (phytase) PhyA {Selenomonas ruminantium [TaxId: 971]} Length = 313 Back     information, alignment and structure
>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 151 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query643
d1p16a2245 mRNA capping enzyme alpha subunit {Yeast (Candida 100.0
d1i9sa_194 mRNA capping enzyme, triphosphatase domain {Mouse 100.0
d1ckma2228 RNA guanylyltransferase (mRNA capping enzyme), N-t 100.0
d1ohea2182 Proline directed phosphatase CDC14b2 {Human (Homo 99.93
d1x9na3220 DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 99.9
d1rxda_152 Protein tyrosine phosphatase type IVa {Human (Homo 99.89
d1d5ra2174 Phoshphoinositide phosphatase Pten (Pten tumor sup 99.85
d1vhra_178 VH1-related dual-specificity phosphatase, VHR {Hum 99.82
d1fpza_176 Kinase associated phosphatase (kap) {Human (Homo s 99.81
d1mkpa_144 Mapk phosphatase {Human (Homo sapiens), pyst1 (mkp 99.8
d1m3ga_145 Mapk phosphatase {Human (Homo sapiens), pac-1 [Tax 99.75
d1a0ia2239 ATP-dependent DNA ligase, N-terminal domain {Bacte 99.73
d1fvia2188 ATP-dependent DNA ligase, N-terminal domain {Chlor 99.47
d1xria_151 Putative phosphatase At1g05000 {Thale cress (Arabi 99.4
d2pt0a1313 Myo-inositol hexaphosphate phosphohydrolase (phyta 99.21
d1g4us2243 SptP tyrosine phosphatase, catalytic domain {Salmo 98.96
d1lara2249 RPTP Lar {Human (Homo sapiens) [TaxId: 9606]} 98.92
d1wcha_308 Tyrosine-protein phosphatase, non-receptor type 13 98.87
d2shpa1307 Tyrosine phosphatase {Human (Homo sapiens), shp-2 98.84
d1lara1317 RPTP Lar {Human (Homo sapiens) [TaxId: 9606]} 98.75
d1jlna_297 Tyrosine phosphatase {Mouse (Mus musculus), ptp-sl 98.75
d1ckma189 RNA guanylyltransferase (mRNA capping enzyme) {Chl 98.75
d2f71a1297 Tyrosine phosphatase {Human (Homo sapiens), 1B [Ta 98.73
d1l8ka_273 Tyrosine phosphatase {Human (Homo sapiens), T-cell 98.72
d1lyva_283 Protein-tyrosine phosphatase YopH, catalytic domai 98.71
d1fpra_284 Tyrosine phosphatase {Human (Homo sapiens), shp-1 98.69
d1rpma_278 Tyrosine phosphatase {Human (Homo sapiens), mu [Ta 98.67
d1yfoa_288 Tyrosine phosphatase {Mouse (Mus musculus) [TaxId: 98.62
d1p15a_245 Protein-tyrosine phosphatase alpha {Mouse (Mus mus 98.62
d1p16a1145 mRNA capping enzyme alpha subunit {Yeast (Candida 98.59
d1s68a_233 RNA ligase 2, N-terminal domain {Bacteriophage T4 98.53
d1ywfa1272 Phosphotyrosine protein phosphatase PtpB {Mycobact 98.23
d1ohea1157 Proline directed phosphatase CDC14b2 {Human (Homo 97.58
d1b04a_312 Adenylation domain of NAD+-dependent DNA ligase {B 94.91
d1ta8a_313 Adenylation domain of NAD+-dependent DNA ligase {E 94.4
d1dgsa3314 Adenylation domain of NAD+-dependent DNA ligase {T 93.3
>d1p16a2 d.142.2.3 (A:1-245) mRNA capping enzyme alpha subunit {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: DNA ligase/mRNA capping enzyme, catalytic domain
family: mRNA capping enzyme
domain: mRNA capping enzyme alpha subunit
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=100.00  E-value=0  Score=335.04  Aligned_cols=228  Identities=29%  Similarity=0.507  Sum_probs=189.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH-HHHCCCEEEEEECCCEEEEEEEEC-----C
Q ss_conf             8888734703689999999986104679999988989853353410214-441278189680573099999989-----9
Q 006504          311 DVLGDEIPNDQQDAFRHFCYQTLKLNFGGRGNMQFPGSHPVSLNSDNLQ-LLRQRYYYATWKADGTRYMMLITI-----D  384 (643)
Q Consensus       311 ~v~G~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~FPG~qPVSl~r~nl~-~L~~~~Y~Vs~KaDG~Ryllli~~-----~  384 (643)
                      +++|+.++++.++++|..|+++|+|+     ..+|||||||||+++|+. .|.+++|+||||+||+||||++..     .
T Consensus        11 ~~pg~~~~~~~~~~~~~~v~~~~~~~-----~~~FpG~qPvs~~~~~~~~~L~~~~Y~v~eK~DG~R~lL~i~~~~~~~~   85 (245)
T d1p16a2          11 VIPGNKLDEEETKELRLMVAELLGRR-----NTGFPGSQPVSFERRHLEETLMQKDYFVCEKTDGLRCLLFLINDPDKGE   85 (245)
T ss_dssp             CCSSEECCHHHHHHHHHHHHHHHTCS-----CCSCCCEEEEECCHHHHHTHHHHSCEEEEEEECSEEEEEEEEEETTTEE
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHCCC-----CCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCEEEEEEEEECCCCCE
T ss_conf             99897289889999999999997889-----9889898832565788786517698899987278078999997389745


Q ss_pred             EEEEEECCCCCCCC-CCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCCHHHHHH
Q ss_conf             79999499951003-56688767755445457987043479998418999752019999887430981146899899999
Q 006504          385 GCYLIDRCFNFRRV-QMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYERWK  463 (643)
Q Consensus       385 ~vyLidR~~~~~~v-~l~FP~~~~~~~~~~~~~~~TlLDGElV~d~~~~~~~~~~rylifDil~~~G~~v~~~pl~eRl~  463 (643)
                      ++||+||+++++.+ ++.||............+.+|+||||++.++....+ ..++|++||+++++|+++++.||.+|+.
T Consensus        86 ~~~li~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~tilDGElv~~~~~~~~-~~~~~~ifDil~~~g~~l~~~~l~~R~~  164 (245)
T d1p16a2          86 GVFLVTRENDYYFIPNIHFPLSVNETREKPTYHHGTLLDGELVLENRNVSE-PVLRYVIFDALAIHGKCIIDRPLPKRLG  164 (245)
T ss_dssp             EEEEEETTCCEEECCSCCCCSCTTCCSSSCCCCSSEEEEEEEEEECCSSSC-CEEEEEEEEEEEETTEECTTSCHHHHHH
T ss_pred             EEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCC-CEEEEEEEEEHHHCCCEEEECCHHHHHH
T ss_conf             899994899748713532246665223453112780588799840466774-1279998630320896334053777788


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEECHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCE
Q ss_conf             99998318552001011125898855688983797223024156999999851113699861489628999867899976
Q 006504          464 MLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGL  543 (643)
Q Consensus       464 ~l~~~Ii~pr~~~~~~i~k~~~~~~~~~~~pf~v~~K~f~~~~~~~~ll~~~~~~l~h~~DGLIF~p~~~pY~~Gt~~~i  543 (643)
                      .+++.+..++....+..    .........+|.++.|.|+.++++..+++. ++++.|++|||||||.++||++||+..|
T Consensus       165 ~l~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~-~~~~~~~~DGLIf~p~~~pY~~Gr~~~~  239 (245)
T d1p16a2         165 YITENVMKPFDNFKKHN----PDIVNSPEFPFKVGFKTMLTSYHADDVLSK-MDKLFHASDGLIYTCAETPYVFGTDQTL  239 (245)
T ss_dssp             HHHHHTHHHHHHHHHHC----HHHHSCTTSCCEEEECCCEEGGGTHHHHTT-GGGCSSCEEEEEEEESSSCCCSEEEEEE
T ss_pred             HHHHHHHHHHHHHHHCC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCEEEEECCCCCEECCCCCCE
T ss_conf             99999877666665113----200011023434331110037889999977-6635888876899719997857998880


Q ss_pred             EEEECC
Q ss_conf             997059
Q 006504          544 LKWKYA  549 (643)
Q Consensus       544 LKWKp~  549 (643)
                      |||||.
T Consensus       240 lKWKP~  245 (245)
T d1p16a2         240 LKWKPA  245 (245)
T ss_dssp             EEECCG
T ss_pred             EEECCC
T ss_conf             895979
>d1i9sa_ c.45.1.1 (A:) mRNA capping enzyme, triphosphatase domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ckma2 d.142.2.3 (A:11-238) RNA guanylyltransferase (mRNA capping enzyme), N-terminal domain {Chlorella virus PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d1ohea2 c.45.1.1 (A:199-380) Proline directed phosphatase CDC14b2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x9na3 d.142.2.1 (A:534-753) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rxda_ c.45.1.1 (A:) Protein tyrosine phosphatase type IVa {Human (Homo sapiens), pr-1 [TaxId: 9606]} Back     information, alignment and structure
>d1d5ra2 c.45.1.1 (A:14-187) Phoshphoinositide phosphatase Pten (Pten tumor suppressor), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vhra_ c.45.1.1 (A:) VH1-related dual-specificity phosphatase, VHR {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fpza_ c.45.1.1 (A:) Kinase associated phosphatase (kap) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mkpa_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pyst1 (mkp3) [TaxId: 9606]} Back     information, alignment and structure
>d1m3ga_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pac-1 [TaxId: 9606]} Back     information, alignment and structure
>d1a0ia2 d.142.2.1 (A:2-240) ATP-dependent DNA ligase, N-terminal domain {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d1fvia2 d.142.2.1 (A:2-189) ATP-dependent DNA ligase, N-terminal domain {Chlorella virus PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2pt0a1 c.45.1.4 (A:34-346) Myo-inositol hexaphosphate phosphohydrolase (phytase) PhyA {Selenomonas ruminantium [TaxId: 971]} Back     information, alignment and structure
>d1g4us2 c.45.1.2 (S:297-539) SptP tyrosine phosphatase, catalytic domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1lara2 c.45.1.2 (A:1628-1876) RPTP Lar {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wcha_ c.45.1.2 (A:) Tyrosine-protein phosphatase, non-receptor type 13 (PTPL1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2shpa1 c.45.1.2 (A:219-525) Tyrosine phosphatase {Human (Homo sapiens), shp-2 [TaxId: 9606]} Back     information, alignment and structure
>d1lara1 c.45.1.2 (A:1307-1623) RPTP Lar {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jlna_ c.45.1.2 (A:) Tyrosine phosphatase {Mouse (Mus musculus), ptp-sl/br7 [TaxId: 10090]} Back     information, alignment and structure
>d1ckma1 b.40.4.6 (A:239-327) RNA guanylyltransferase (mRNA capping enzyme) {Chlorella virus PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d2f71a1 c.45.1.2 (A:2-298) Tyrosine phosphatase {Human (Homo sapiens), 1B [TaxId: 9606]} Back     information, alignment and structure
>d1l8ka_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens), T-cell [TaxId: 9606]} Back     information, alignment and structure
>d1lyva_ c.45.1.2 (A:) Protein-tyrosine phosphatase YopH, catalytic domain {Yersinia enterocolitica [TaxId: 630]} Back     information, alignment and structure
>d1fpra_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens), shp-1 [TaxId: 9606]} Back     information, alignment and structure
>d1rpma_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens), mu [TaxId: 9606]} Back     information, alignment and structure
>d1yfoa_ c.45.1.2 (A:) Tyrosine phosphatase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1p15a_ c.45.1.2 (A:) Protein-tyrosine phosphatase alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1p16a1 b.40.4.6 (A:246-390) mRNA capping enzyme alpha subunit {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1s68a_ d.142.2.4 (A:) RNA ligase 2, N-terminal domain {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1ywfa1 c.45.1.5 (A:4-275) Phosphotyrosine protein phosphatase PtpB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ohea1 c.45.1.1 (A:42-198) Proline directed phosphatase CDC14b2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b04a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ta8a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1dgsa3 d.142.2.2 (A:1-314) Adenylation domain of NAD+-dependent DNA ligase {Thermus filiformis [TaxId: 276]} Back     information, alignment and structure