Citrus Sinensis ID: 006513

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640--
MLRALAVGLVVSSLLISVSVVDGDNNFPRCNCDDDASSWSIESILETQKVSDFLIAVAYFSIPVELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPHSFQLMLSLTVFKILTALVSCATSITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLRPSXXXXXXXLLYPYLNLENLRSTHIPILS
cHHHHHHHHHHHHHHHHEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccEEEEEcccccccccEEEEEEccccccccccccccccHHHHHHHcccccEEEcccccHHHcccccccccccHHHHHccHHHHHccccccHHHHHHHHHEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHccccEEEEEEEccccccccccccHHHHHHHHHHHHccccccccccEEEEEEEEEccccccccccccEEEEEEEcccccccHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHcccEEEEEcccccccEEEEEEEEEcccccccccccccccccccccccccccccccc
cHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHEHHHEEccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccEEEEEcccccccEEEEEEcccccccccccEEEcccccHHHHcccccEEEEccccccEEEEcccccccccHHHHHHHHHHHHcccccccHHHccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccEEccHHHHHHHHHHHHHcHEEEcccccEEEEEEEEEccccccccccccccccccccccEEEEEEEEEccccccHHHcHHHccccccccccccccccHHHHHHHHHHHHccccEEEEEcccccccEEEEEEEEccccccccccccccccccccccccccEEEEEc
MLRALAVGLVVSSLLISVSvvdgdnnfprcncdddasswsIESILETQKVSDFLIAVAYFSIPVELLYFISCSNVPFKWVLIQFIAFIVLCGLThllngwtygphSFQLMLSLTVFKILTALVSCATSITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNtlglqncavwmpneIKTEMNLThqlngrnysdmcssipitdqdvvrikgsdgvnilgpdselaaassgesvesgpvaairmpmlrvsnfkggtpELVSACYAILVLVLpneqfrtwsNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMsngmrrpmhSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDvmdnspkdsgrfplEIRSFRLHAMIKEAACLARCLSIYRgfgfsievdrslpdhvmgdeRRVFQVILHMVGSLlncnsrrgTVLFRVVSengsqdrndkkwatwrqssvdgdvHIRFEILLNevgsqpevstsVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGniwmvpsshgfaqSMGLVLRFqlrpsxxxxxxxllypylnlenlrsTHIPILS
MLRALAVGLVVSSLLISVSVVDGDNNFPRCNCDDDASSWSIESILETQKVSDFLIAVAYFSIPVELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPHSFQLMLSLTVFKILTALVSCATSITLITLIPLLLKVKVREFMLKKkawdlgrevgiimkqkeagvhVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSElaaassgesveSGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVmdnspkdsgrfPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVsengsqdrndkkwatwrqssvdgdVHIRFEILlnevgsqpevstsvaqLGIRRIVNegiedrmsFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLRPSXXXxxxxllypylnlenlrsTHIPILS
MLRAlavglvvssllisvsvvDGDNNFPRCNCDDDASSWSIESILETQKVSDFLIAVAYFSIPVELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPHSFQLMLSLTVFKILTALVSCAtsitlitliplllKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELaaassgesvesgpvaAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLRPSxxxxxxxllYPYLNLENLRSTHIPILS
***ALAVGLVVSSLLISVSVVDGDNNFPRCNCDDDASSWSIESILETQKVSDFLIAVAYFSIPVELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPHSFQLMLSLTVFKILTALVSCATSITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNIL*********************AIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVL**********************************************HSILGLLSIMQDVNLNSDQRMIVETM*****VLSTLI*************FPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVS*********KKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLRPSXXXXXXXLLYPYLNLENLRSTHI****
***ALAVGLVVSSLLISVSVVDGDNNFPRCNCDDDASSWSIESILETQKVSDFLIAVAYFSIPVELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPHSFQLMLSLTVFKILTALVSCATSITLITLIPLLLKVKVREFMLKKKA******************HVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRV**************ATWRQSSVDGDVHIRFEI********************************SFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLRPS**********P******LRSTHIPILS
MLRALAVGLVVSSLLISVSVVDGDNNFPRCNCDDDASSWSIESILETQKVSDFLIAVAYFSIPVELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPHSFQLMLSLTVFKILTALVSCATSITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSEL***********GPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQH*********************ASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSE**********WATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLRPSXXXXXXXLLYPYLNLENLRSTHIPILS
MLRALAVGLVVSSLLISVSVVDGDNNFPRCNCDDDASSWSIESILETQKVSDFLIAVAYFSIPVELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPHSFQLMLSLTVFKILTALVSCATSITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENG*******KWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLRPSXXXXXXXLLYPYLNLENLRSTHIPILS
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLRALAVGLVVSSLLISVSVVDGDNNFPRCNCDDDASSWSIESILETQKVSDFLIAVAYFSIPVELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPHSFQLMLSLTVFKILTALVSCATSITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLRPSXXXXXXXLLYPYLNLENLRSTHIPILS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query642 2.2.26 [Sep-21-2011]
Q0WPQ2 773 Ethylene receptor 2 OS=Ar yes no 0.942 0.782 0.623 0.0
Q9ZTP3 766 Protein EIN4 OS=Arabidops no no 0.923 0.774 0.588 0.0
P93825645 Ethylene response sensor no no 0.908 0.903 0.532 1e-166
Q41342 754 Ethylene receptor 1 OS=So N/A no 0.870 0.741 0.421 1e-124
Q9SSY6 740 Ethylene receptor 1 OS=Cu N/A no 0.848 0.736 0.421 1e-121
O82436 740 Ethylene receptor 1 OS=Cu N/A no 0.850 0.737 0.422 1e-121
P49333 738 Ethylene receptor 1 OS=Ar no no 0.855 0.743 0.421 1e-120
Q9XH57 741 Ethylene receptor 2 OS=Pe N/A no 0.915 0.793 0.405 1e-120
Q9XH58 740 Ethylene receptor 1 OS=Pe N/A no 0.866 0.751 0.425 1e-120
Q9M7M1 738 Ethylene receptor OS=Prun N/A no 0.866 0.753 0.417 1e-119
>sp|Q0WPQ2|ETR2_ARATH Ethylene receptor 2 OS=Arabidopsis thaliana GN=ETR2 PE=1 SV=2 Back     alignment and function desciption
 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/629 (62%), Positives = 481/629 (76%), Gaps = 24/629 (3%)

Query: 1   MLRALAVGLVVSSLLISVSVVDGDNN--FPRCNCDDDASS-WSIESILETQKVSDFLIAV 57
           M++ +A  L++ S+++ VS V   N   +PRCNC+D+ +S WS E+ILETQ+VSDFLIAV
Sbjct: 1   MVKEIASWLLILSMVVFVSPVLAINGGGYPRCNCEDEGNSFWSTENILETQRVSDFLIAV 60

Query: 58  AYFSIPVELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPHSFQLMLSLTVFK 117
           AYFSIP+ELLYF+SCSNVPFKWVL +FIAFIVLCG+THLL+GWTY  H F+LM++ TVFK
Sbjct: 61  AYFSIPIELLYFVSCSNVPFKWVLFEFIAFIVLCGMTHLLHGWTYSAHPFRLMMAFTVFK 120

Query: 118 ILTALVSCATSITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQ 177
           +LTALVSCAT+ITLITLIPLLLKVKVREFMLKKKA +LGREVG+I+ +KE G HVRMLTQ
Sbjct: 121 MLTALVSCATAITLITLIPLLLKVKVREFMLKKKAHELGREVGLILIKKETGFHVRMLTQ 180

Query: 178 EIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPI 237
           EIRKSLDRHTILYTTLVELS TLGLQNCAVWMPN+  TEM+LTH+L GR     C S+ +
Sbjct: 181 EIRKSLDRHTILYTTLVELSKTLGLQNCAVWMPNDGGTEMDLTHELRGRGGYGGC-SVSM 239

Query: 238 TDQDVVRIKGSDGVNILGPDSELAAAS--SGESVESGPVAAIRMPMLRVSNFKGGTPELV 295
            D DVVRI+ SD VN+L  DS +A AS   G+  E G VAAIRMPMLRVS+F G   EL 
Sbjct: 240 EDLDVVRIRESDEVNVLSVDSSIARASGGGGDVSEIGAVAAIRMPMLRVSDFNG---EL- 295

Query: 296 SACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRA 355
              YAILV VLP    R W+ QE+EIVKVVADQV VAL HAAVLEESQ MREKL EQNRA
Sbjct: 296 --SYAILVCVLPGGTPRDWTYQEIEIVKVVADQVTVALDHAAVLEESQLMREKLAEQNRA 353

Query: 356 LQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSS 415
           LQ A++DAL ASQARNAFQK MS GMRRPMHSILGLLS++QD  L+ +Q+MIV+TM+K+ 
Sbjct: 354 LQMAKRDALRASQARNAFQKTMSEGMRRPMHSILGLLSMIQDEKLSDEQKMIVDTMVKTG 413

Query: 416 NVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSL 475
           NV+S L+ D MD      GRF  E++ F LH  I EAAC+ARCL +  G  F ++ ++SL
Sbjct: 414 NVMSNLVGDSMDVP---DGRFGTEMKPFSLHRTIHEAACMARCLCLCNGIRFLVDAEKSL 470

Query: 476 PDHVMGDERRVFQVILHMVGSLLNCNSRR--GTVLFRVVSENGSQDRNDKKWATWRQ--S 531
           PD+V+GDERRVFQVILH+VGSL+    R+   +++F+V+ E GS DR+D +WA WR   S
Sbjct: 471 PDNVVGDERRVFQVILHIVGSLVKPRKRQEGSSLMFKVLKERGSLDRSDHRWAAWRSPAS 530

Query: 532 SVDGDVHIRFEILLNEVGSQPEVSTSVA----QLG-IRRIVNEGIEDRMSFSVCKKLVQL 586
           S DGDV+IRFE+ +    S  +   SV+    ++G +R     G+   +SF VCKK+VQL
Sbjct: 531 SADGDVYIRFEMNVENDDSSSQSFASVSSRDQEVGDVRFSGGYGLGQDLSFGVCKKVVQL 590

Query: 587 MQGNIWMVPSSHGFAQSMGLVLRFQLRPS 615
           + GNI +VP S G  ++M L+LRF+ RPS
Sbjct: 591 IHGNISVVPGSDGSPETMSLLLRFRRRPS 619
Ethylene receptor related to bacterial two-component regulators. Acts as a redundant negative regulator of ethylene signaling.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: -
>sp|Q9ZTP3|EIN4_ARATH Protein EIN4 OS=Arabidopsis thaliana GN=EIN4 PE=1 SV=1 Back     alignment and function description
>sp|P93825|ERS2_ARATH Ethylene response sensor 2 OS=Arabidopsis thaliana GN=ERS2 PE=1 SV=2 Back     alignment and function description
>sp|Q41342|ETR1_SOLLC Ethylene receptor 1 OS=Solanum lycopersicum GN=ETR1 PE=1 SV=1 Back     alignment and function description
>sp|Q9SSY6|ETR1_CUCSA Ethylene receptor 1 OS=Cucumis sativus GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|O82436|ETR1_CUCMN Ethylene receptor 1 OS=Cucumis melo var. cantalupensis GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|P49333|ETR1_ARATH Ethylene receptor 1 OS=Arabidopsis thaliana GN=ETR1 PE=1 SV=1 Back     alignment and function description
>sp|Q9XH57|ETR2_PELHO Ethylene receptor 2 OS=Pelargonium hortorum GN=ETR2 PE=2 SV=1 Back     alignment and function description
>sp|Q9XH58|ETR1_PELHO Ethylene receptor 1 OS=Pelargonium hortorum GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|Q9M7M1|ETR1_PRUPE Ethylene receptor OS=Prunus persica GN=ETR1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query642
283520944 764 ethylene response 2 [Citrus sinensis] gi 0.957 0.804 0.996 0.0
224111018 768 ethylene receptor 2 [Populus trichocarpa 0.956 0.799 0.758 0.0
255576860 764 ethylene receptor, putative [Ricinus com 0.922 0.774 0.785 0.0
54260394 767 ethylene receptor [Pyrus pyrifolia] 0.953 0.797 0.767 0.0
302035371 767 putative ethylene receptor [Pyrus commun 0.953 0.797 0.767 0.0
15131533 765 ethylene receptor [Fragaria x ananassa] 0.954 0.801 0.756 0.0
224099905 762 ethylene receptor 5 [Populus trichocarpa 0.956 0.805 0.754 0.0
114229335 767 ethylene receptor 2 [Malus x domestica] 0.920 0.770 0.775 0.0
159031783 767 ethylene receptor [Cucumis melo var. can 0.954 0.799 0.733 0.0
111183356 763 ethylene receptor [Ziziphus jujuba] 0.951 0.800 0.741 0.0
>gi|283520944|gb|ADB25214.1| ethylene response 2 [Citrus sinensis] gi|283520952|gb|ADB25218.1| ethylene response 2 [Citrus hybrid cultivar] Back     alignment and taxonomy information
 Score = 1260 bits (3261), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 613/615 (99%), Positives = 614/615 (99%)

Query: 1   MLRALAVGLVVSSLLISVSVVDGDNNFPRCNCDDDASSWSIESILETQKVSDFLIAVAYF 60
           MLRALAVGLVVSSLLISVSVVDGDNNFPRCNCDDDASSWSIESILETQKVSDFLIAVAYF
Sbjct: 1   MLRALAVGLVVSSLLISVSVVDGDNNFPRCNCDDDASSWSIESILETQKVSDFLIAVAYF 60

Query: 61  SIPVELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPHSFQLMLSLTVFKILT 120
           SIPVELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPHSFQLMLSLTVFKILT
Sbjct: 61  SIPVELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPHSFQLMLSLTVFKILT 120

Query: 121 ALVSCATSITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIR 180
           ALVSCATSITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIR
Sbjct: 121 ALVSCATSITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIR 180

Query: 181 KSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQ 240
           KSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQ
Sbjct: 181 KSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQ 240

Query: 241 DVVRIKGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYA 300
           DVVRIKGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYA
Sbjct: 241 DVVRIKGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYA 300

Query: 301 ILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQAQ 360
           ILVLVLPNEQFRTWSNQELEIVKVVADQV VALSHAAVLEESQHMREKLEEQNRALQQAQ
Sbjct: 301 ILVLVLPNEQFRTWSNQELEIVKVVADQVAVALSHAAVLEESQHMREKLEEQNRALQQAQ 360

Query: 361 KDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLST 420
           KDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLST
Sbjct: 361 KDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLST 420

Query: 421 LISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVM 480
           LISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVM
Sbjct: 421 LISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVM 480

Query: 481 GDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIR 540
           GDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRND+KWATWRQSSVDGDVHIR
Sbjct: 481 GDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDQKWATWRQSSVDGDVHIR 540

Query: 541 FEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGF 600
           FEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGF
Sbjct: 541 FEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGF 600

Query: 601 AQSMGLVLRFQLRPS 615
           AQSMGLVLRFQLRPS
Sbjct: 601 AQSMGLVLRFQLRPS 615

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224111018|ref|XP_002315717.1| ethylene receptor 2 [Populus trichocarpa] gi|222864757|gb|EEF01888.1| ethylene receptor 2 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255576860|ref|XP_002529316.1| ethylene receptor, putative [Ricinus communis] gi|223531240|gb|EEF33085.1| ethylene receptor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|54260394|dbj|BAD61003.1| ethylene receptor [Pyrus pyrifolia] Back     alignment and taxonomy information
>gi|302035371|gb|ADK92392.1| putative ethylene receptor [Pyrus communis] Back     alignment and taxonomy information
>gi|15131533|emb|CAC48386.1| ethylene receptor [Fragaria x ananassa] Back     alignment and taxonomy information
>gi|224099905|ref|XP_002311669.1| ethylene receptor 5 [Populus trichocarpa] gi|222851489|gb|EEE89036.1| ethylene receptor 5 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|114229335|gb|ABI58286.1| ethylene receptor 2 [Malus x domestica] Back     alignment and taxonomy information
>gi|159031783|dbj|BAF91863.1| ethylene receptor [Cucumis melo var. cantalupensis] gi|159031785|dbj|BAF91864.1| ethylene receptor [Cucumis melo var. cantalupensis] Back     alignment and taxonomy information
>gi|111183356|gb|ABH07935.1| ethylene receptor [Ziziphus jujuba] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query642
TAIR|locus:2086208 773 ETR2 "ethylene response 2" [Ar 0.901 0.749 0.607 7.8e-181
TAIR|locus:2084968 766 EIN4 "ETHYLENE INSENSITIVE 4" 0.951 0.797 0.543 2.8e-169
TAIR|locus:2018259645 ERS2 "ethylene response sensor 0.904 0.900 0.519 4.3e-148
UNIPROTKB|Q41342 754 ETR1 "Ethylene receptor 1" [So 0.897 0.763 0.400 4.9e-108
TAIR|locus:2201552 738 ETR1 "ETHYLENE RESPONSE 1" [Ar 0.861 0.749 0.402 2.8e-105
UNIPROTKB|Q41341635 Never-ripe "Ethylene receptor" 0.894 0.903 0.377 1.5e-97
TAIR|locus:2058500613 ERS1 "AT2G40940" [Arabidopsis 0.884 0.926 0.373 5.5e-93
UNIPROTKB|Q9KPC0 927 VC_2453 "Sensor histidine kina 0.412 0.285 0.270 5.3e-14
TIGR_CMR|VC_2453 927 VC_2453 "sensor histidine kina 0.412 0.285 0.270 5.3e-14
TIGR_CMR|SPO_0132 739 SPO_0132 "sensor histidine kin 0.367 0.319 0.264 2.8e-13
TAIR|locus:2086208 ETR2 "ethylene response 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1755 (622.8 bits), Expect = 7.8e-181, P = 7.8e-181
 Identities = 365/601 (60%), Positives = 444/601 (73%)

Query:    27 FPRCNCDDDASS-WSIESILETQKVSDFLIAVAYFSIPVELLYFISCSNVPFKWVLIQFI 85
             +PRCNC+D+ +S WS E+ILETQ+VSDFLIAVAYFSIP+ELLYF+SCSNVPFKWVL +FI
Sbjct:    29 YPRCNCEDEGNSFWSTENILETQRVSDFLIAVAYFSIPIELLYFVSCSNVPFKWVLFEFI 88

Query:    86 AFIVLCGLTHLLNGWTYGPHSFQLMLSLTVFKILTALVSCAXXXXXXXXXXXXXKVKVRE 145
             AFIVLCG+THLL+GWTY  H F+LM++ TVFK+LTALVSCA             KVKVRE
Sbjct:    89 AFIVLCGMTHLLHGWTYSAHPFRLMMAFTVFKMLTALVSCATAITLITLIPLLLKVKVRE 148

Query:   146 FMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNC 205
             FMLKKKA +LGREVG+I+ +KE G HVRMLTQEIRKSLDRHTILYTTLVELS TLGLQNC
Sbjct:   149 FMLKKKAHELGREVGLILIKKETGFHVRMLTQEIRKSLDRHTILYTTLVELSKTLGLQNC 208

Query:   206 AVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELXXXXX 265
             AVWMPN+  TEM+LTH+L GR     CS + + D DVVRI+ SD VN+L  DS +     
Sbjct:   209 AVWMPNDGGTEMDLTHELRGRGGYGGCS-VSMEDLDVVRIRESDEVNVLSVDSSIARASG 267

Query:   266 XXXXXXX--XXXAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVK 323
                         AIRMPMLRVS+F G   EL    YAILV VLP    R W+ QE+EIVK
Sbjct:   268 GGGDVSEIGAVAAIRMPMLRVSDFNG---EL---SYAILVCVLPGGTPRDWTYQEIEIVK 321

Query:   324 VVADQVLVALSHAAVLEESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRR 383
             VVADQV VAL HAAVLEESQ MREKL EQNRALQ A++DAL ASQARNAFQK MS GMRR
Sbjct:   322 VVADQVTVALDHAAVLEESQLMREKLAEQNRALQMAKRDALRASQARNAFQKTMSEGMRR 381

Query:   384 PMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSF 443
             PMHSILGLLS++QD  L+ +Q+MIV+TM+K+ NV+S L+ D MD  P   GRF  E++ F
Sbjct:   382 PMHSILGLLSMIQDEKLSDEQKMIVDTMVKTGNVMSNLVGDSMD-VP--DGRFGTEMKPF 438

Query:   444 RLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSR 503
              LH  I EAAC+ARCL +  G  F ++ ++SLPD+V+GDERRVFQVILH+VGSL+    R
Sbjct:   439 SLHRTIHEAACMARCLCLCNGIRFLVDAEKSLPDNVVGDERRVFQVILHIVGSLVKPRKR 498

Query:   504 R--GTVLFRVVSENGSQDRNDKKWATWRQ--SSVDGDVHIRFEILLNEVGSQPEVSTSVA 559
             +   +++F+V+ E GS DR+D +WA WR   SS DGDV+IRFE+ +    S  +   SV+
Sbjct:   499 QEGSSLMFKVLKERGSLDRSDHRWAAWRSPASSADGDVYIRFEMNVENDDSSSQSFASVS 558

Query:   560 ----QLG-IRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLRP 614
                 ++G +R     G+   +SF VCKK+VQL+ GNI +VP S G  ++M L+LRF+ RP
Sbjct:   559 SRDQEVGDVRFSGGYGLGQDLSFGVCKKVVQLIHGNISVVPGSDGSPETMSLLLRFRRRP 618

Query:   615 S 615
             S
Sbjct:   619 S 619
GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA
GO:0000156 "phosphorelay response regulator activity" evidence=IEA
GO:0000160 "phosphorelay signal transduction system" evidence=IEA
GO:0004673 "protein histidine kinase activity" evidence=IEA;ISS
GO:0004871 "signal transducer activity" evidence=IEA
GO:0005789 "endoplasmic reticulum membrane" evidence=IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0007165 "signal transduction" evidence=IEA
GO:0009873 "ethylene mediated signaling pathway" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0005515 "protein binding" evidence=IPI
GO:0004674 "protein serine/threonine kinase activity" evidence=TAS
GO:0051740 "ethylene binding" evidence=IDA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0009165 "nucleotide biosynthetic process" evidence=RCA
GO:0004872 "receptor activity" evidence=TAS
GO:0010105 "negative regulation of ethylene mediated signaling pathway" evidence=TAS
TAIR|locus:2084968 EIN4 "ETHYLENE INSENSITIVE 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018259 ERS2 "ethylene response sensor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q41342 ETR1 "Ethylene receptor 1" [Solanum lycopersicum (taxid:4081)] Back     alignment and assigned GO terms
TAIR|locus:2201552 ETR1 "ETHYLENE RESPONSE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q41341 Never-ripe "Ethylene receptor" [Solanum lycopersicum (taxid:4081)] Back     alignment and assigned GO terms
TAIR|locus:2058500 ERS1 "AT2G40940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KPC0 VC_2453 "Sensor histidine kinase/response regulator" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2453 VC_2453 "sensor histidine kinase/response regulator" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0132 SPO_0132 "sensor histidine kinase/response regulator" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q0WPQ2ETR2_ARATH2, ., 7, ., 1, 1, ., -0.62320.94230.7826yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.130.766
3rd Layer2.7.13.30.824
3rd Layer2.7.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query642
TIGR02956 968 TIGR02956, TMAO_torS, TMAO reductase sytem sensor 1e-21
PRK11107 919 PRK11107, PRK11107, hybrid sensory histidine kinas 7e-12
PRK11466 914 PRK11466, PRK11466, hybrid sensory histidine kinas 3e-10
pfam0051266 pfam00512, HisKA, His Kinase A (phospho-acceptor) 2e-08
smart0038866 smart00388, HisKA, His Kinase A (phosphoacceptor) 3e-08
COG0642336 COG0642, BaeS, Signal transduction histidine kinas 8e-08
pfam01590143 pfam01590, GAF, GAF domain 1e-07
PRK10841 924 PRK10841, PRK10841, hybrid sensory kinase in two-c 5e-07
PRK11091 779 PRK11091, PRK11091, aerobic respiration control se 8e-07
cd0008265 cd00082, HisKA, Histidine Kinase A (dimerization/p 1e-05
PRK15347 921 PRK15347, PRK15347, two component system sensor ki 6e-05
PRK09959 1197 PRK09959, PRK09959, hybrid sensory histidine kinas 2e-04
>gnl|CDD|234070 TIGR02956, TMAO_torS, TMAO reductase sytem sensor TorS Back     alignment and domain information 
 Score = 99.9 bits (249), Expect = 1e-21
 Identities = 61/258 (23%), Positives = 122/258 (47%), Gaps = 30/258 (11%)

Query: 341 ESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNL 400
           E     E+L  + +   +A+ +A  A++A++AF   MS+ +R P++ ILG L ++ D  L
Sbjct: 435 ELAETNERLNAEVKNHAKARAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGL 494

Query: 401 NSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLS 460
            S Q+  ++ + +S   L  +++D++D S  ++G   +  R F L+A++ +   L    +
Sbjct: 495 TSQQQQYLQVINRSGESLLDILNDILDYSKIEAGHLSISPRPFDLNALLDDVHHLMVSRA 554

Query: 461 IYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDR 520
             +G    + +   LP+   GD  R+ QV++++VG+ +     RG+V+ RV         
Sbjct: 555 QLKGIQLRLNIPEQLPNWWQGDGPRIRQVLINLVGNAIKFTD-RGSVVLRV--------- 604

Query: 521 NDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQL-----GIRRIVNEGIEDRM 575
                      S++ D  + FE+     G   E   ++        G RR    G    +
Sbjct: 605 -----------SLNDDSSLLFEVEDTGCGIAEEEQATLFDAFTQADGRRRSGGTG----L 649

Query: 576 SFSVCKKLVQLMQGNIWM 593
             ++ ++LV+ M G + +
Sbjct: 650 GLAISQRLVEAMDGELGV 667

This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072) [Signal transduction, Two-component systems]. Length = 968
>gnl|CDD|236848 PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>gnl|CDD|236914 PRK11466, PRK11466, hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>gnl|CDD|215963 pfam00512, HisKA, His Kinase A (phospho-acceptor) domain Back     alignment and domain information
>gnl|CDD|214644 smart00388, HisKA, His Kinase A (phosphoacceptor) domain Back     alignment and domain information
>gnl|CDD|223715 COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|216590 pfam01590, GAF, GAF domain Back     alignment and domain information
>gnl|CDD|182772 PRK10841, PRK10841, hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>gnl|CDD|236842 PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>gnl|CDD|119399 cd00082, HisKA, Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase Back     alignment and domain information
>gnl|CDD|237951 PRK15347, PRK15347, two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>gnl|CDD|182169 PRK09959, PRK09959, hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 642
COG2205890 KdpD Osmosensitive K+ channel histidine kinase [Si 100.0
PRK10490895 sensor protein KdpD; Provisional 100.0
PRK13837 828 two-component VirA-like sensor kinase; Provisional 100.0
COG5002459 VicK Signal transduction histidine kinase [Signal 100.0
TIGR02916679 PEP_his_kin putative PEP-CTERM system histidine ki 100.0
PRK11091 779 aerobic respiration control sensor protein ArcB; P 100.0
PRK10618 894 phosphotransfer intermediate protein in two-compon 100.0
PRK09303380 adaptive-response sensory kinase; Validated 100.0
PRK11107 919 hybrid sensory histidine kinase BarA; Provisional 100.0
PRK10841 924 hybrid sensory kinase in two-component regulatory 100.0
TIGR02956 968 TMAO_torS TMAO reductase sytem sensor TorS. This p 100.0
PRK15347 921 two component system sensor kinase SsrA; Provision 100.0
COG4251750 Bacteriophytochrome (light-regulated signal transd 100.0
PRK11466 914 hybrid sensory histidine kinase TorS; Provisional 100.0
PRK11006430 phoR phosphate regulon sensor protein; Provisional 100.0
PRK09959 1197 hybrid sensory histidine kinase in two-component r 100.0
PRK10364457 sensor protein ZraS; Provisional 100.0
TIGR02938494 nifL_nitrog nitrogen fixation negative regulator N 100.0
COG4191603 Signal transduction histidine kinase regulating C4 100.0
COG3852363 NtrB Signal transduction histidine kinase, nitroge 100.0
PRK10604433 sensor protein RstB; Provisional 99.98
PRK10815485 sensor protein PhoQ; Provisional 99.98
PRK10755356 sensor protein BasS/PmrB; Provisional 99.97
PRK10549466 signal transduction histidine-protein kinase BaeS; 99.97
TIGR03785703 marine_sort_HK proteobacterial dedicated sortase s 99.97
PRK09835482 sensor kinase CusS; Provisional 99.97
PRK10337449 sensor protein QseC; Provisional 99.97
TIGR01386457 cztS_silS_copS heavy metal sensor kinase. Members 99.97
TIGR02966333 phoR_proteo phosphate regulon sensor kinase PhoR. 99.96
PRK11073348 glnL nitrogen regulation protein NR(II); Provision 99.96
PRK09467435 envZ osmolarity sensor protein; Provisional 99.96
PRK13557 540 histidine kinase; Provisional 99.96
PRK11100475 sensory histidine kinase CreC; Provisional 99.96
PRK09470461 cpxA two-component sensor protein; Provisional 99.96
PRK11360607 sensory histidine kinase AtoS; Provisional 99.95
COG5000712 NtrY Signal transduction histidine kinase involved 99.95
COG0642336 BaeS Signal transduction histidine kinase [Signal 99.95
KOG0519 786 consensus Sensory transduction histidine kinase [S 99.94
PRK10600569 nitrate/nitrite sensor protein NarX; Provisional 99.94
PRK13560807 hypothetical protein; Provisional 99.93
PRK11644495 sensory histidine kinase UhpB; Provisional 99.92
COG4192673 Signal transduction histidine kinase regulating ph 99.92
PRK11086542 sensory histidine kinase DcuS; Provisional 99.91
PRK15053545 dpiB sensor histidine kinase DpiB; Provisional 99.91
COG3290537 CitA Signal transduction histidine kinase regulati 99.91
PRK10935565 nitrate/nitrite sensor protein NarQ; Provisional 99.86
PRK13559361 hypothetical protein; Provisional 99.85
PF02518111 HATPase_c: Histidine kinase-, DNA gyrase B-, and H 99.81
COG3850574 NarQ Signal transduction histidine kinase, nitrate 99.8
PRK10547 670 chemotaxis protein CheA; Provisional 99.72
COG3851497 UhpB Signal transduction histidine kinase, glucose 99.55
PRK04184 535 DNA topoisomerase VI subunit B; Validated 99.54
COG3275557 LytS Putative regulator of cell autolysis [Signal 99.52
COG4585365 Signal transduction histidine kinase [Signal trans 99.48
smart00387111 HATPase_c Histidine kinase-like ATPases. Histidine 99.48
COG0643 716 CheA Chemotaxis protein histidine kinase and relat 99.44
KOG0519 786 consensus Sensory transduction histidine kinase [S 99.42
PRK14868 795 DNA topoisomerase VI subunit B; Provisional 99.4
PRK15429686 formate hydrogenlyase transcriptional activator Fh 99.37
COG3920221 Signal transduction histidine kinase [Signal trans 99.37
TIGR01052 488 top6b DNA topoisomerase VI, B subunit. This model 99.33
PRK14867 659 DNA topoisomerase VI subunit B; Provisional 99.29
cd00075103 HATPase_c Histidine kinase-like ATPases; This fami 99.29
TIGR01925137 spIIAB anti-sigma F factor. This model describes t 99.26
PF0051268 HisKA: His Kinase A (phospho-acceptor) domain; Int 99.24
COG4564459 Signal transduction histidine kinase [Signal trans 99.23
PRK11061 748 fused phosphoenolpyruvate-protein phosphotransfera 99.22
PRK03660146 anti-sigma F factor; Provisional 99.19
COG2972456 Predicted signal transduction protein with a C-ter 99.11
TIGR01817534 nifA Nif-specific regulatory protein. This model r 99.02
PF13492129 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_ 98.98
PF01590154 GAF: GAF domain; InterPro: IPR003018 This domain i 98.95
PRK04069161 serine-protein kinase RsbW; Provisional 98.9
PRK05022509 anaerobic nitric oxide reductase transcription reg 98.81
smart00065149 GAF Domain present in phytochromes and cGMP-specif 98.81
PF13185148 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_ 98.76
TIGR01924159 rsbW_low_gc serine-protein kinase RsbW. This model 98.74
PRK15429 686 formate hydrogenlyase transcriptional activator Fh 98.74
PF14501100 HATPase_c_5: GHKL domain 98.68
KOG0787414 consensus Dehydrogenase kinase [Signal transductio 98.62
COG3605 756 PtsP Signal transduction protein containing GAF an 98.56
smart0038866 HisKA His Kinase A (phosphoacceptor) domain. Dimer 98.49
COG1389 538 DNA topoisomerase VI, subunit B [DNA replication, 98.46
PF13581125 HATPase_c_2: Histidine kinase-like ATPase domain 98.23
COG3604550 FhlA Transcriptional regulator containing GAF, AAA 98.18
cd0008265 HisKA Histidine Kinase A (dimerization/phosphoacce 98.08
COG2203175 FhlA FOG: GAF domain [Signal transduction mechanis 98.07
TIGR00585 312 mutl DNA mismatch repair protein MutL. All protein 97.96
PRK13558665 bacterio-opsin activator; Provisional 97.87
COG2172146 RsbW Anti-sigma regulatory factor (Ser/Thr protein 97.55
PF13589137 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and 97.08
PRK00095 617 mutL DNA mismatch repair protein; Reviewed 96.97
COG5385214 Uncharacterized protein conserved in bacteria [Fun 96.91
PF11849174 DUF3369: Domain of unknown function (DUF3369); Int 96.89
PF10090182 DUF2328: Uncharacterized protein conserved in bact 96.61
PF13493105 DUF4118: Domain of unknown function (DUF4118); PDB 96.4
COG1956163 GAF domain-containing protein [Signal transduction 96.3
PF04340225 DUF484: Protein of unknown function, DUF484; Inter 96.24
PRK05559 631 DNA topoisomerase IV subunit B; Reviewed 95.62
COG0323 638 MutL DNA mismatch repair enzyme (predicted ATPase) 94.95
PRK10963223 hypothetical protein; Provisional 94.8
PRK14083 601 HSP90 family protein; Provisional 94.69
PTZ00272 701 heat shock protein 83 kDa (Hsp83); Provisional 94.49
PRK05218 613 heat shock protein 90; Provisional 94.26
TIGR01059 654 gyrB DNA gyrase, B subunit. This model describes t 94.01
TIGR01055 625 parE_Gneg DNA topoisomerase IV, B subunit, proteob 93.07
PRK05644 638 gyrB DNA gyrase subunit B; Validated 93.04
COG3159218 Uncharacterized protein conserved in bacteria [Fun 92.74
COG0326 623 HtpG Molecular chaperone, HSP90 family [Posttransl 91.79
smart00433 594 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras 91.08
COG5381184 Uncharacterized protein conserved in bacteria [Fun 90.9
PTZ00130 814 heat shock protein 90; Provisional 88.42
PF0756876 HisKA_2: Histidine kinase; InterPro: IPR011495 Two 88.09
PRK14939 756 gyrB DNA gyrase subunit B; Provisional 85.35
PF1468962 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical do 84.4
PHA02569 602 39 DNA topoisomerase II large subunit; Provisional 84.28
PF12805284 FUSC-like: FUSC-like inner membrane protein yccS 83.7
TIGR02851180 spore_V_T stage V sporulation protein T. Members o 82.7
PF10066115 DUF2304: Uncharacterized conserved protein (DUF230 81.05
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=9.1e-66  Score=554.08  Aligned_cols=472  Identities=13%  Similarity=0.162  Sum_probs=396.6

Q ss_pred             hhHHHHHHHhhHhHHHHHHHhcC-CCCchHHHHHHHHHHHHHhhHHHHHHHH-----------cCchhHHHHHHHHHHHH
Q 006513           51 SDFLIAVAYFSIPVELLYFISCS-NVPFKWVLIQFIAFIVLCGLTHLLNGWT-----------YGPHSFQLMLSLTVFKI  118 (642)
Q Consensus        51 sd~~ia~a~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~  118 (642)
                      .|++++++++++.+.++.++... +..|..|+|+.|+++++...|.++++++           |.+|.|+|. ++++.|+
T Consensus       397 ~~~l~a~~~~a~~t~i~~~l~~~~~~~ni~mvFllgVlv~av~~g~~pa~~aailsvl~fNyFF~ePryTf~-v~d~~y~  475 (890)
T COG2205         397 RDYLVAILICALATAIAIQLDKFFDLANIVMLFLLGVLVVAVLTGRWPAVLAALLSVLVFNYFFTEPRYTFA-VSDPQYL  475 (890)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhheecCCceEEE-EecCchH
Confidence            68999999999999999988765 8899999999999999887666555544           256666655 9999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHhccchhhHHHHHHHHHHh
Q 006513          119 LTALVSCATSITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSN  198 (642)
Q Consensus       119 ~t~~v~~~~ai~l~~l~~~~l~~~~~e~~l~~~~~~L~~e~~~~~~~~~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~  198 (642)
                      +||+||+++|++++.|                 +.++++|.+..++|+++.+++++++++++.+.++++++.++..++.+
T Consensus       476 vTf~vml~vai~t~~L-----------------t~~vr~Qa~~ar~r~~rT~~Lye~s~~L~~a~t~~~vl~~~~~qi~~  538 (890)
T COG2205         476 VTFAVMLAVALLTGNL-----------------TARVREQARAARRREQRTELLYEFSKKLAGARTREDILAAAGQQIAS  538 (890)
T ss_pred             HHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            9999999999999999                 89999999999999999999999999999999999999999999999


Q ss_pred             HhCCcEEEEEEEcCCCCeeEEEEEecCCCCCCCCCccccCChhHHHHHhcCCeeEeCCCcchhhccCCCcccCCceeEEE
Q 006513          199 TLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELAAASSGESVESGPVAAIR  278 (642)
Q Consensus       199 ~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~  278 (642)
                      +++. ++.++++++++....+  ..+        ..++..+..+.       .|+...+.+.+.    +........+.+
T Consensus       539 ~~~~-~v~i~l~~~~~~~~~~--~~~--------~~l~~~d~aaa-------~W~~~~~~~AG~----gTdTlpg~~~~~  596 (890)
T COG2205         539 LLNQ-RVVILLPDDNGKLQPL--GNP--------DGLSADDRAAA-------QWAFENGKPAGA----GTDTLPGAKYLY  596 (890)
T ss_pred             HhCC-ceEEEEecCCcccccc--cCC--------ccccHHHHHHh-------hchhhCCCcccc----CCCCCCCCceeE
Confidence            9998 5888988876533110  000        00111111122       223333332222    233344555888


Q ss_pred             ecceeccccCCCcchhhccceeeEEEEeeCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006513          279 MPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQ  358 (642)
Q Consensus       279 ~Pl~~~~~~~g~~p~~~~~~~~igvl~l~~~~~~~~~~~e~~ll~~~a~qva~al~~a~l~~e~~~~~~~l~~~~~~L~~  358 (642)
                      +|+...+..             .||+.+.+......++++..++.++++|+|.|+++..+.++.++.+-+.         
T Consensus       597 lPl~~~~~~-------------~gvlgv~~~~~~ll~p~~~rlL~a~~~q~AlAler~~L~~~~~~a~l~~---------  654 (890)
T COG2205         597 LPLKSGGKV-------------LGVLGVEPGLSPLLAPEQRRLLDAVLTQIALALERVTLAEEAEQARLAA---------  654 (890)
T ss_pred             eecccCCce-------------EEEEEecCCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence            997755554             6688888876667899999999999999999999999887755443332         


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhcc--CCCHH-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 006513          359 AQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDV--NLNSD-QRMIVETMMKSSNVLSTLISDVMDNSPKDSGR  435 (642)
Q Consensus       359 a~~~~~~a~~~~~~~l~~~sHelrtPL~~I~g~~~lL~~~--~~~~~-~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~~  435 (642)
                            +.++.|++|++++||||||||++|.|.++.|...  .++++ +.+.+..|.+++++|.++|+||||++|+++|.
T Consensus       655 ------e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG~  728 (890)
T COG2205         655 ------ERERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGG  728 (890)
T ss_pred             ------HHHHHHHHHHHHhhccccCcHHHHhhhHHHhhhcccccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCC
Confidence                  2378999999999999999999999999999853  34554 67999999999999999999999999999999


Q ss_pred             ccceeeeeeHHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCCEEEEEEEEec
Q 006513          436 FPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSEN  515 (642)
Q Consensus       436 ~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~~~~~~  515 (642)
                      ++++++|..+.+++.+++..+++....+  .+.++++.++| ++.+|..+++||+.||++||+||+|++.+|.|.+..+.
T Consensus       729 ~~l~~~~~~veEvVg~Al~r~~k~~~~~--~i~v~~~~dl~-li~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~~  805 (890)
T COG2205         729 VNLKLDWVLVEEVVGEALQRLRKRFTGH--KIVVSVPVDLP-LIHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVER  805 (890)
T ss_pred             cccccchhhHHHHHHHHHHHhhhhcCCc--eEEEecCCCCc-eEecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEec
Confidence            9999999999999999999998877666  57777888988 79999999999999999999999999999999999887


Q ss_pred             CCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccC-CCCCCccchHHHHHHHHHHcCCEEEEE
Q 006513          516 GSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV-NEGIEDRMSFSVCKKLVQLMQGNIWMV  594 (642)
Q Consensus       516 ~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~-~~~~G~GLGL~i~k~iv~~~gG~I~v~  594 (642)
                      ++                     ++|+|.|+|+|||+++.++||++|||..+ +...|+||||+|||.||++|||+|+++
T Consensus       806 ~~---------------------v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~~~~~G~GLGLsIc~~iv~ahgG~I~a~  864 (890)
T COG2205         806 EN---------------------VVFSVIDEGPGIPEGELERIFDKFYRGNKESATRGVGLGLAICRGIVEAHGGTISAE  864 (890)
T ss_pred             ce---------------------EEEEEEeCCCCCChhHHHHhhhhhhcCCCCCCCCCccccHHHHHHHHHHcCCeEEEE
Confidence            66                     99999999999999999999999999665 457899999999999999999999999


Q ss_pred             ecCCCCceEEEEEEEeecCCC
Q 006513          595 PSSHGFAQSMGLVLRFQLRPS  615 (642)
Q Consensus       595 s~~~g~Gt~f~i~LP~~~~~~  615 (642)
                      ++ +++|++|+|.||....+.
T Consensus       865 ~~-~~gGa~f~~~LP~~~~~~  884 (890)
T COG2205         865 NN-PGGGAIFVFTLPVEEDPP  884 (890)
T ss_pred             Ec-CCCceEEEEEeecCCCCc
Confidence            98 688999999999986654

>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>PRK13837 two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase Back     alignment and domain information
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>PRK09303 adaptive-response sensory kinase; Validated Back     alignment and domain information
>PRK11107 hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS Back     alignment and domain information
>PRK15347 two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] Back     alignment and domain information
>PRK11466 hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>PRK11006 phoR phosphate regulon sensor protein; Provisional Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>PRK10364 sensor protein ZraS; Provisional Back     alignment and domain information
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL Back     alignment and domain information
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] Back     alignment and domain information
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] Back     alignment and domain information
>PRK10604 sensor protein RstB; Provisional Back     alignment and domain information
>PRK10815 sensor protein PhoQ; Provisional Back     alignment and domain information
>PRK10755 sensor protein BasS/PmrB; Provisional Back     alignment and domain information
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional Back     alignment and domain information
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase Back     alignment and domain information
>PRK09835 sensor kinase CusS; Provisional Back     alignment and domain information
>PRK10337 sensor protein QseC; Provisional Back     alignment and domain information
>TIGR01386 cztS_silS_copS heavy metal sensor kinase Back     alignment and domain information
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR Back     alignment and domain information
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional Back     alignment and domain information
>PRK09467 envZ osmolarity sensor protein; Provisional Back     alignment and domain information
>PRK13557 histidine kinase; Provisional Back     alignment and domain information
>PRK11100 sensory histidine kinase CreC; Provisional Back     alignment and domain information
>PRK09470 cpxA two-component sensor protein; Provisional Back     alignment and domain information
>PRK11360 sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] Back     alignment and domain information
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional Back     alignment and domain information
>PRK13560 hypothetical protein; Provisional Back     alignment and domain information
>PRK11644 sensory histidine kinase UhpB; Provisional Back     alignment and domain information
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] Back     alignment and domain information
>PRK11086 sensory histidine kinase DcuS; Provisional Back     alignment and domain information
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional Back     alignment and domain information
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] Back     alignment and domain information
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional Back     alignment and domain information
>PRK13559 hypothetical protein; Provisional Back     alignment and domain information
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] Back     alignment and domain information
>PRK10547 chemotaxis protein CheA; Provisional Back     alignment and domain information
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms] Back     alignment and domain information
>PRK04184 DNA topoisomerase VI subunit B; Validated Back     alignment and domain information
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms] Back     alignment and domain information
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>smart00387 HATPase_c Histidine kinase-like ATPases Back     alignment and domain information
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] Back     alignment and domain information
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK14868 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional Back     alignment and domain information
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR01052 top6b DNA topoisomerase VI, B subunit Back     alignment and domain information
>PRK14867 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>TIGR01925 spIIAB anti-sigma F factor Back     alignment and domain information
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] Back     alignment and domain information
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional Back     alignment and domain information
>PRK03660 anti-sigma F factor; Provisional Back     alignment and domain information
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms] Back     alignment and domain information
>TIGR01817 nifA Nif-specific regulatory protein Back     alignment and domain information
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A Back     alignment and domain information
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information
>PRK04069 serine-protein kinase RsbW; Provisional Back     alignment and domain information
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional Back     alignment and domain information
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A Back     alignment and domain information
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW Back     alignment and domain information
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional Back     alignment and domain information
>PF14501 HATPase_c_5: GHKL domain Back     alignment and domain information
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms] Back     alignment and domain information
>smart00388 HisKA His Kinase A (phosphoacceptor) domain Back     alignment and domain information
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain Back     alignment and domain information
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase Back     alignment and domain information
>COG2203 FhlA FOG: GAF domain [Signal transduction mechanisms] Back     alignment and domain information
>TIGR00585 mutl DNA mismatch repair protein MutL Back     alignment and domain information
>PRK13558 bacterio-opsin activator; Provisional Back     alignment and domain information
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] Back     alignment and domain information
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B Back     alignment and domain information
>PRK00095 mutL DNA mismatch repair protein; Reviewed Back     alignment and domain information
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF11849 DUF3369: Domain of unknown function (DUF3369); InterPro: IPR021800 This domain is functionally uncharacterised Back     alignment and domain information
>PF10090 DUF2328: Uncharacterized protein conserved in bacteria (DUF2328); InterPro: IPR018762 Members of this family of hypothetical bacterial proteins have no known function Back     alignment and domain information
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A Back     alignment and domain information
>COG1956 GAF domain-containing protein [Signal transduction mechanisms] Back     alignment and domain information
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function Back     alignment and domain information
>PRK05559 DNA topoisomerase IV subunit B; Reviewed Back     alignment and domain information
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK10963 hypothetical protein; Provisional Back     alignment and domain information
>PRK14083 HSP90 family protein; Provisional Back     alignment and domain information
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional Back     alignment and domain information
>PRK05218 heat shock protein 90; Provisional Back     alignment and domain information
>TIGR01059 gyrB DNA gyrase, B subunit Back     alignment and domain information
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial Back     alignment and domain information
>PRK05644 gyrB DNA gyrase subunit B; Validated Back     alignment and domain information
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00433 TOP2c TopoisomeraseII Back     alignment and domain information
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PTZ00130 heat shock protein 90; Provisional Back     alignment and domain information
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] Back     alignment and domain information
>PRK14939 gyrB DNA gyrase subunit B; Provisional Back     alignment and domain information
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B Back     alignment and domain information
>PHA02569 39 DNA topoisomerase II large subunit; Provisional Back     alignment and domain information
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS Back     alignment and domain information
>TIGR02851 spore_V_T stage V sporulation protein T Back     alignment and domain information
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query642
4ew8_A268 Sensor protein DIVL; signal transduction, two-comp 4e-22
2c2a_A258 Sensor histidine kinase; phosphotransfer, PHOQ, se 4e-13
3p01_A184 Two-component response regulator; PSI-2, midwest c 1e-08
3o5y_A165 Sensor protein; GAF domain, histidine, kinase, PSI 2e-07
2qyb_A181 Membrane protein, putative; GAF domain, domain of 2e-06
3k2n_A177 Sigma-54-dependent transcriptional regulator; PSI- 3e-05
3d36_A244 Sporulation kinase B; GHKL ATPase, four helix bund 9e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Length = 268 Back     alignment and structure
 Score = 95.3 bits (238), Expect = 4e-22
 Identities = 33/157 (21%), Positives = 66/157 (42%), Gaps = 2/157 (1%)

Query: 340 EESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDV- 398
             S  +         AL         A + +  F   +S  +R P+ +I+G   +++   
Sbjct: 10  HSSGLVPRGSHMLQSALADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERAD 69

Query: 399 NLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARC 458
            ++   R  V  +  ++  L+  I DV+D +  D+G   LEI   R+  ++  A   A  
Sbjct: 70  GISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAGEMALEIEDIRVSDLLLNAQERALK 129

Query: 459 LSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVG 495
            +   G   ++E +  +   + GD +R+ Q + H+V 
Sbjct: 130 DAQLGGVTLAVECEEDVG-LIRGDGKRLAQTLDHLVE 165
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Length = 258 Back     alignment and structure
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP} Length = 184 Back     alignment and structure
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans} Length = 165 Back     alignment and structure
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca} Length = 181 Back     alignment and structure
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls} Length = 177 Back     alignment and structure
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Length = 244 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 642
d2c2aa2161 d.122.1.3 (A:321-481) Sensor histidine kinase TM08 1e-05
d1r62a_156 d.122.1.3 (A:) Nitrogen regulation protein NtrB, C 1e-04
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Length = 161 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Histidine kinase
domain: Sensor histidine kinase TM0853
species: Thermotoga maritima [TaxId: 2336]

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 26/160 (16%), Positives = 50/160 (31%), Gaps = 25/160 (15%)

Query: 438 LEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSL 497
           +      L  +++ A    +  +         E +   P     D  R+ QV+L+++   
Sbjct: 2   INREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLN-- 59

Query: 498 LNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFE-----ILLNEVGSQP 552
              N  + +           +     K+        DG V I  E     I  +      
Sbjct: 60  ---NGVKYS-----------KKDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIF 105

Query: 553 EVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIW 592
           E    V       +   G+      ++ K++V+L  G IW
Sbjct: 106 EQFYRVDSSLTYEVPGTGL----GLAITKEIVELHGGRIW 141
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 156 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query642
d2c2aa2161 Sensor histidine kinase TM0853 {Thermotoga maritim 100.0
d1ysra1148 Sensor-type histidine kinase PrrB {Mycobacterium t 99.98
d1id0a_146 Histidine kinase PhoQ domain {Escherichia coli [Ta 99.97
d1bxda_161 Histidine kinase domain of the osmosensor EnvZ {Es 99.97
d1r62a_156 Nitrogen regulation protein NtrB, C-terminal domai 99.96
d1jm6a2190 Pyruvate dehydrogenase kinase {Rat (Rattus norvegi 99.96
d1gkza2193 Branched-chain alpha-ketoacid dehydrogenase kinase 99.96
d1ixma_179 Sporulation response regulatory protein Spo0B {Bac 99.8
d2hkja3219 Topoisomerase VI-B subunit {Archaeon Sulfolobus sh 99.69
d1i58a_189 Histidine kinase CheA {Thermotoga maritima [TaxId: 99.61
d1mc0a1187 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF 99.57
d1th8a_139 Anti-sigma factor spoIIab {Bacillus stearothermoph 99.45
d1mc0a2154 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF 99.39
d1y8oa2125 Pyruvate dehydrogenase kinase {Human (Homo sapiens 99.37
d2k2na1170 Sensor protein CYB2465 {Synechococcus sp. [TaxId: 99.35
d2c2aa189 Sensor histidine kinase TM0853 {Thermotoga maritim 99.34
d2o9ca1187 Bacteriophytochrome BphP {Deinococcus radiodurans 99.3
d2oola1194 Sensor protein PhyB2 {Rhodopseudomonas palustris [ 99.29
d1vhma_159 Hypothetical protein YebR {Escherichia coli [TaxId 99.24
d3c2wa1192 Bacteriophytochrome BphP {Pseudomonas aeruginosa [ 99.19
d2veaa1196 Phytochrome-like protein Cph1 {Synechocystis sp. p 99.17
d1f5ma_176 Hypothetical protein ykl069wp {Baker's yeast (Sacc 98.75
d1joya_67 EnvZ histidine kinase {Escherichia coli [TaxId: 56 98.71
d1h7sa2203 DNA mismatch repair protein PMS2 {Human (Homo sapi 97.73
d1b63a2218 DNA mismatch repair protein MutL {Escherichia coli 97.46
d1pvga2239 DNA topoisomerase II {Baker's yeast (Saccharomyces 96.55
d1ei1a2219 DNA gyrase B {Escherichia coli [TaxId: 562]} 95.83
d1s14a_168 Topoisomerase IV subunit B {Escherichia coli [TaxI 95.79
d1kija2212 DNA gyrase B {Thermus thermophilus [TaxId: 274]} 95.7
d1uyla_208 HSP90 {Human (Homo sapiens) [TaxId: 9606]} 95.39
d2iwxa1213 HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T 95.3
d2gqpa1227 HSP90 {Dog (Canis familiaris) [TaxId: 9615]} 94.02
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Histidine kinase
domain: Sensor histidine kinase TM0853
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1e-33  Score=220.79  Aligned_cols=154  Identities=14%  Similarity=0.181  Sum_probs=135.2

Q ss_pred             CCEEEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCC---EEEEEEEE
Q ss_conf             520144319999999999999898633975999868999980882498999999999997603369998---79999997
Q 006513          437 PLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRG---TVLFRVVS  513 (642)
Q Consensus       437 ~l~~~~~~L~~li~~~~~~~~~~~~~~~i~l~~~i~~~lp~~v~~D~~~l~qVl~NLi~NAik~~~~~g---~I~i~v~~  513 (642)
                      +++++++++.+++++++..++..+..+++.+.++.+.+.|..+.+|+.++.||+.||++||+||++.++   .|.+.+..
T Consensus         1 el~~e~v~l~~li~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~D~~~l~qvl~NLi~NAik~t~~~~~~~~i~i~~~~   80 (161)
T d2c2aa2           1 QINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDE   80 (161)
T ss_dssp             CCCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEE
T ss_pred             CCCCEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE
T ss_conf             97047999999999999999999987797899983899987999889999999999999999963607975304677885


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHCCCCCCCCC---CCCCCCCCHHHHHHHHHHHCCCE
Q ss_conf             159877565211012356789952999999887999992013210236523557---99998653399999999981999
Q 006513          514 ENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV---NEGIEDRMSFSVCKKLVQLMQGN  590 (642)
Q Consensus       514 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~V~D~G~Gi~~e~~~~if~~f~~~~~---~~~~g~GLGL~i~k~iv~~~gG~  590 (642)
                      .++                     ++.++|+|+|+|||++.++++|++|++...   ....|+||||+|||++++.|||+
T Consensus        81 ~~~---------------------~~~i~V~D~G~GI~~~~~~~iF~~F~~~~~~~~~~~~G~GLGL~i~k~iv~~hgG~  139 (161)
T d2c2aa2          81 KDG---------------------GVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGR  139 (161)
T ss_dssp             ETT---------------------EEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHHHHHHHHHHTTCE
T ss_pred             CCC---------------------EEEEEEEECCCCCCHHHHHHHHCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCE
T ss_conf             599---------------------99999998277779899988639848767888788893457999999999987998


Q ss_pred             EEEEECCCCCCEEEEEEEEEEC
Q ss_conf             9998438998469999998304
Q 006513          591 IWMVPSSHGFAQSMGLVLRFQL  612 (642)
Q Consensus       591 I~v~s~~~g~Gt~f~i~LP~~~  612 (642)
                      |+++|. +|+||+|+|+||...
T Consensus       140 i~v~s~-~~~Gt~f~i~lP~~~  160 (161)
T d2c2aa2         140 IWVESE-VGKGSRFFVWIPKDR  160 (161)
T ss_dssp             EEEEEE-TTTEEEEEEEEECCC
T ss_pred             EEEEEC-CCCEEEEEEEEECCC
T ss_conf             999964-999069999998545
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Back     information, alignment and structure
>d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1mc0a2 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2k2na1 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synechococcus sp. [TaxId: 1131]} Back     information, alignment and structure
>d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2o9ca1 d.110.2.1 (A:135-321) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2oola1 d.110.2.1 (A:140-333) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]} Back     information, alignment and structure
>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3c2wa1 d.110.2.1 (A:118-309) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2veaa1 d.110.2.1 (A:131-326) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]} Back     information, alignment and structure
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1joya_ a.30.2.1 (A:) EnvZ histidine kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure