Citrus Sinensis ID: 006520

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640--
Protein Sequence
MDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMYHHGYGYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQPITPTSSPYSPSPVAPTPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNNTYGRGSLPGRGPASGYQDPRCNLDGMRSPIPWLDGPVISDARPVASNTFNSSISNVNNVASSRNQNYRPNSHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYDLRTNGRGWLSVDGKYKSRGRGNGYFGYGNENMDGLNELNRGPRAKGAKNQKGSAPNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKTIQEKKAKQQQFQKQVWEGKPAEEKKELANGELKTQKSSEVASDLVEERTTTVQSNGDLRLSENGSVAKTGDAHKGSKPVVVSEKVILANGVANGC
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccHHHHHHHHHccEEccccccHHHHHHHHHHHHHccccccEEEEEEEcccccEEEEEEcccccccccccccccccccccccccEEEEEEccccccccccccccccccccEEccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHccccccccccHHHHcccHHccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEccccccccccEEcccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccHHHccccHccccccccEEEEEEEccccccccEEEEEEEEccccccHHHHHHHHHHHHccccccEEEEEEEcccccEEEEEEEEccccccccccEEEEccccccccEEEEEEEEcccccEEEEEEEcccccccccccccccccHHHHHHHHHHHHccccccccHccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccEEccc
Coil and Loop (DISEMBL)
mdpnmcyvpngypstafyyggydgnvgewddytryvsqdgvdmtsgvygdngslmyhhgygyapyppyspatspvptmgtdgqlygpqhyqyphyfqpitptsspyspspvaptpgdiptsvaadqkplpvestngksngvanaggvkgnngsapfkptyqpfnsnntygrgslpgrgpasgyqdprcnldgmrspipwldgpvisdarpvasntfnssiSNVNNvassrnqnyrpnshymglhhprpmsgmgaaqgfmnmnrmypnklygqygntfrsgvgfgsngydlrtngrgwlsvdgkyksrgrgngyfgygnenmdglnelnrgprakgaknqkgsapnalpvkeqnvltngtaedendkislspdrdeynkadfpeeytdAKFFVIKsyseddvhksIKYSVwastpngnkkLDAAYQEAQqksrscpvflLFSVNtsgqfvglaemagpvdfnknveywqqdkwtgcfpvkwhivkdvpnsLLKHItlennenkpvtnsrdtQEIKLEQGLKLIKIFkdhpsktcilddfgfYETRQKTIQEKKAKQQQFQKQVwegkpaeeKKELAngelktqkssEVASDLVEERtttvqsngdlrlsengsvaktgdahkgskpvvVSEKVILANGVANGC
Flexible Loop (DISEMBL)
MDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMYHHGYGYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQPITPTSSPYSPSPVAPTPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNNTYGRGSLPGRGPASGYQDPRCNLDGMRSPIPWLDGPVISDARPVASNTFNSSISNVNNVASSRNQNYRPNSHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYDLRTNGRgwlsvdgkyksrgrgNGYFGYGNENMDGLNELNRGPRAKGAknqkgsapnalpvkeqnvltngtaedendkislspdrdeynkadfpeeytDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHitlennenkpvtnsrdtqeIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKTIQEKKAKQQQFQkqvwegkpaeekkelangelktqkssevasdlveertttvqsngdlrlsengsvaktgdahkgskpvvvsekvilangvangc
Low Complexity Region (SEG)
MDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMyhhgygyapyppyspatspvptMGTDGQLYGPQHYQYPHYFQpitptsspyspspvaptpGDIPTSVAADQKPLPVESTNGKSngvanaggvkgnngSAPFKPTYQPFNSNNTYGRGSLPGRGPASGYQDPRCNLDGMRSPIPWLDGPVISDARPVAsntfnssisnvnnvassrnqnYRPNSHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYDLRTNGRGWLSVDGKYKSrgrgngyfgygnENMDGLNELNRGPRAKGAKNQKGSAPNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKTIqekkakqqqfqkqVWEGKPAEEKKELANGELKTQKSSEVASDLVEERTTTVQSNGDLRLSENGSVAKTGDAHKGSKPVVVSEKVILANGVANGC
Disordered region (IsUnstruct)
****MCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMYHHGYGYAPYPPY*************GQLYGPQHYQYPHYFQP**************************************************************************************************IPWLDGPVI***************************************************GFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYDLRTNGRGWLSVDGKYKSRGRGNGYFGYG******************************************************************EYTDAKFFVIKSYSEDDVHKSIKYSVWAS********************SCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITL****************IKLEQGLKLIKIFKDHPSKTCILDDFGFYETR***************************************************************************************VIL********
Disordered Region (DISOPRED)
****MCY*PNGYPSTAFYY***D******************************LMYHHGY*********************************************************************************************************************************************************************************************************************************************************************************************************************************PEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGF***********************************************************************************************N******
Disordered Region (DISEMBL)
MDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMYHHGYGYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQPITPT***********TPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNNTYGRGSLPGRGPASGYQDPRCNLDGMRSPIPWLDGPVISDARPVASNTFNSSISNVNNVASSRNQNYRPNSHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYDLRTNGRGWLSVDGKYKSRGRGNGYFGYGNENMDGLNELNRGP************PNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDA*********RSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKT*******************PAEEKKELAN*************************NGDLRLSENGSV**********KPVVVSEKVILANGVANGC
Disordered Region (DISPRO)
*DPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMYHHGYGYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQPITPTSSPYSPSPVAPTPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNNTYGRGSLPGRGPASGYQDPRCNLDGMRSPIPWLDGPVIS********************************************************RMYPNKLYGQYGNTFRSGVGFGSNGYDLRTNGRGWLS******************************************************************KISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKTIQEKKA*****************************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMYHHGYGYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQPITPTSSPYSPSPVAPTPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNNTYGRGSLPGRGPASGYQDPRCNLDGMRSPIPWLDGPVISDARPVASNTFNSSISNVNNVASSRNQNYRPNSHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYDLRTNGRGWLSVDGKYKSRGRGNGYFGYGNENMDGLNELNRGPRAKGAKNQKGSAPNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKTIQEKKAKQQQFQKQVWEGKPAEEKKELANGELKTQKSSEVASDLVEERTTTVQSNGDLRLSENGSVAKTGDAHKGSKPVVVSEKVILANGVANGC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	642	2.2.26 [Sep-21-2011]
Q0VCZ3	580	YTH domain family protein	yes	no	0.280	0.310	0.540	2e-52
Q4R5D9	579	YTH domain family protein	N/A	no	0.280	0.310	0.540	2e-52
Q9Y5A9	579	YTH domain family protein	yes	no	0.280	0.310	0.540	2e-52
P59326	559	YTH domain family protein	no	no	0.342	0.393	0.460	2e-51
Q9BYJ9	559	YTH domain family protein	no	no	0.285	0.327	0.516	1e-50
Q5RFL8	585	YTH domain family protein	no	no	0.258	0.283	0.556	3e-49
Q8BYK6	585	YTH domain family protein	no	no	0.258	0.283	0.556	3e-49
Q7Z739	585	YTH domain family protein	no	no	0.258	0.283	0.556	3e-49
Q06390	306	YTH domain-containing pro	yes	no	0.230	0.483	0.401	6e-25
Q96MU7	727	YTH domain-containing pro	no	no	0.207	0.182	0.331	1e-14

>sp|Q0VCZ3|YTHD2_BOVIN YTH domain family protein 2 OS=Bos taurus GN=YTHDF2 PE=2 SV=1

 Score =  207 bits (528), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 99/183 (54%), Positives = 124/183 (67%), Gaps = 3/183 (1%)

Query: 374 DEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRS 433
           + YN  DF       + F+IKSYSEDD+H+SIKY++W ST +GNK+LDAAY+    K   
Sbjct: 397 NNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKG-- 454

Query: 434 CPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKH 493
            PV+LLFSVN SG F G+AEM   VD+N     W QDKW G F V+W  VKDVPNS L+H
Sbjct: 455 -PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRH 513

Query: 494 ITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKTIQEKKA 553
           I LENNENKPVTNSRDTQE+ LE+  +++KI   +   T I DDF  YE RQ+  +  K 
Sbjct: 514 IRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKK 573

Query: 554 KQQ 556
           ++Q
Sbjct: 574 ERQ 576

Bos taurus (taxid: 9913)

>sp|Q4R5D9|YTHD2_MACFA YTH domain family protein 2 OS=Macaca fascicularis GN=YTHDF2 PE=2 SV=1

 Score =  207 bits (527), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 99/183 (54%), Positives = 124/183 (67%), Gaps = 3/183 (1%)

Query: 374 DEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRS 433
           + YN  DF       + F+IKSYSEDD+H+SIKY++W ST +GNK+LDAAY+    K   
Sbjct: 396 NNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKG-- 453

Query: 434 CPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKH 493
            PV+LLFSVN SG F G+AEM   VD+N     W QDKW G F V+W  VKDVPNS L+H
Sbjct: 454 -PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRH 512

Query: 494 ITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKTIQEKKA 553
           I LENNENKPVTNSRDTQE+ LE+  +++KI   +   T I DDF  YE RQ+  +  K 
Sbjct: 513 IRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKK 572

Query: 554 KQQ 556
           ++Q
Sbjct: 573 ERQ 575

Macaca fascicularis (taxid: 9541)

>sp|Q9Y5A9|YTHD2_HUMAN YTH domain family protein 2 OS=Homo sapiens GN=YTHDF2 PE=1 SV=2

 Score =  207 bits (527), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 99/183 (54%), Positives = 124/183 (67%), Gaps = 3/183 (1%)

Query: 374 DEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRS 433
           + YN  DF       + F+IKSYSEDD+H+SIKY++W ST +GNK+LDAAY+    K   
Sbjct: 396 NNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKG-- 453

Query: 434 CPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKH 493
            PV+LLFSVN SG F G+AEM   VD+N     W QDKW G F V+W  VKDVPNS L+H
Sbjct: 454 -PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRH 512

Query: 494 ITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKTIQEKKA 553
           I LENNENKPVTNSRDTQE+ LE+  +++KI   +   T I DDF  YE RQ+  +  K 
Sbjct: 513 IRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKK 572

Query: 554 KQQ 556
           ++Q
Sbjct: 573 ERQ 575

Homo sapiens (taxid: 9606)

>sp|P59326|YTHD1_MOUSE YTH domain family protein 1 OS=Mus musculus GN=Ythdf1 PE=2 SV=1

 Score =  204 bits (518), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 106/230 (46%), Positives = 140/230 (60%), Gaps = 10/230 (4%)

Query: 332 RAKGAKNQKGSAPNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFF 391
           ++ GA +   S  NA P    +V ++   E      S       YN  +F       + F
Sbjct: 340 QSGGANSDSNSVGNAQPTSAPSVESHPVLEKLKAAHS-------YNPKEFDWNLKSGRVF 392

Query: 392 VIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGL 451
           +IKSYSEDD+H+SIKYS+W ST +GNK+LD A++    K    PV+LLFSVN SG F G+
Sbjct: 393 IIKSYSEDDIHRSIKYSIWCSTEHGNKRLDGAFRSMSSKG---PVYLLFSVNGSGHFCGV 449

Query: 452 AEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQ 511
           AEM  PVD+  +   W QDKW G F VKW  VKDVPN+ L+HI LENN+NKPVTNSRDTQ
Sbjct: 450 AEMKSPVDYGTSAGVWSQDKWKGKFDVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQ 509

Query: 512 EIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKTIQEKKAKQQQFQKQ 561
           E+ LE+  +++KI   +   T I DDF  YE RQ+  +  + ++Q   KQ
Sbjct: 510 EVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEEVVRKERQNRNKQ 559

Mus musculus (taxid: 10090)

>sp|Q9BYJ9|YTHD1_HUMAN YTH domain family protein 1 OS=Homo sapiens GN=YTHDF1 PE=1 SV=1

 Score =  202 bits (513), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 96/186 (51%), Positives = 126/186 (67%), Gaps = 3/186 (1%)

Query: 376 YNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCP 435
           YN  +F       + F+IKSYSEDD+H+SIKYS+W ST +GNK+LD+A++    K    P
Sbjct: 377 YNPKEFEWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRCMSSKG---P 433

Query: 436 VFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHIT 495
           V+LLFSVN SG F G+AEM  PVD+  +   W QDKW G F V+W  VKDVPN+ L+HI 
Sbjct: 434 VYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVQWIFVKDVPNNQLRHIR 493

Query: 496 LENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKTIQEKKAKQ 555
           LENN+NKPVTNSRDTQE+ LE+  +++KI   +   T I DDF  YE RQ+  +  + ++
Sbjct: 494 LENNDNKPVTNSRDTQEVPLEKAKQVLKIISSYKHTTSIFDDFAHYEKRQEEEEVVRKER 553

Query: 556 QQFQKQ 561
           Q   KQ
Sbjct: 554 QSRNKQ 559

Homo sapiens (taxid: 9606)

>sp|Q5RFL8|YTHD3_PONAB YTH domain family protein 3 OS=Pongo abelii GN=YTHDF3 PE=2 SV=1

 Score =  197 bits (500), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 94/169 (55%), Positives = 116/169 (68%), Gaps = 3/169 (1%)

Query: 374 DEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRS 433
           + YN  DF     + + F+IKSYSEDD+H+SIKYS+W ST +GNK+LDAAY+    K   
Sbjct: 402 NNYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG-- 459

Query: 434 CPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKH 493
            P++LLFSVN SG F G+AEM   VD+N     W QDKW G F VKW  VKDVPN+ L+H
Sbjct: 460 -PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRH 518

Query: 494 ITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYE 542
           I LENN+NKPVTNSRDTQE+ LE+  +++KI       T I DDF  YE
Sbjct: 519 IRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYE 567

Pongo abelii (taxid: 9601)

>sp|Q8BYK6|YTHD3_MOUSE YTH domain family protein 3 OS=Mus musculus GN=Ythdf3 PE=1 SV=2

 Score =  197 bits (500), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 94/169 (55%), Positives = 116/169 (68%), Gaps = 3/169 (1%)

Query: 374 DEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRS 433
           + YN  DF     + + F+IKSYSEDD+H+SIKYS+W ST +GNK+LDAAY+    K   
Sbjct: 402 NNYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG-- 459

Query: 434 CPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKH 493
            P++LLFSVN SG F G+AEM   VD+N     W QDKW G F VKW  VKDVPN+ L+H
Sbjct: 460 -PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRH 518

Query: 494 ITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYE 542
           I LENN+NKPVTNSRDTQE+ LE+  +++KI       T I DDF  YE
Sbjct: 519 IRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYE 567

Mus musculus (taxid: 10090)

>sp|Q7Z739|YTHD3_HUMAN YTH domain family protein 3 OS=Homo sapiens GN=YTHDF3 PE=1 SV=1

 Score =  197 bits (500), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 94/169 (55%), Positives = 116/169 (68%), Gaps = 3/169 (1%)

Query: 374 DEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRS 433
           + YN  DF     + + F+IKSYSEDD+H+SIKYS+W ST +GNK+LDAAY+    K   
Sbjct: 402 NNYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG-- 459

Query: 434 CPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKH 493
            P++LLFSVN SG F G+AEM   VD+N     W QDKW G F VKW  VKDVPN+ L+H
Sbjct: 460 -PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRH 518

Query: 494 ITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYE 542
           I LENN+NKPVTNSRDTQE+ LE+  +++KI       T I DDF  YE
Sbjct: 519 IRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYE 567

Homo sapiens (taxid: 9606)

>sp|Q06390|YD374_YEAST YTH domain-containing protein YDR374C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YDR374C PE=4 SV=1

 Score =  116 bits (290), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 94/157 (59%), Gaps = 9/157 (5%)

Query: 387 DAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSG 446
           +++FFVIKS S   V +S    +W+ST  GNK+L  AY++    ++   VFL FS+NTSG
Sbjct: 154 NSRFFVIKSSSLKHVKRSFYNGIWSSTHFGNKRLSEAYKKLNSGAK---VFLFFSINTSG 210

Query: 447 QFVGLAEMAGPVDFNKNVEYWQ-QDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVT 505
           +F G+AEM   +  + +   W+ + K+   F V+W IV+D+ N  LK   + +NE KP+T
Sbjct: 211 RFCGVAEMVSDLKMDLDTSIWEDEQKYGKAFKVRWVIVRDINNRSLKRFLIPSNEMKPIT 270

Query: 506 NSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYE 542
           +SRDTQEI    G+ +I +FK   S     D F F +
Sbjct: 271 HSRDTQEIPYSIGISIINLFKTQDS-----DIFSFLD 302

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q96MU7|YTDC1_HUMAN YTH domain-containing protein 1 OS=Homo sapiens GN=YTHDC1 PE=1 SV=3

 Score = 82.0 bits (201), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 12/145 (8%)

Query: 387 DAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSG 446
           DA+FF+IKS + ++V  +    VW++ P   KKL+ A++ A+       V L+FSV  SG
Sbjct: 354 DARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARS------VILIFSVRESG 407

Query: 447 QFVGLAEMAGPVDFNKNVEYW------QQDKWTGCFPVKWHIVKDVPNSLLKHITLENNE 500
           +F G A ++       +  +W            G F + W   +++P +   H+T   NE
Sbjct: 408 KFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNE 467

Query: 501 NKPVTNSRDTQEIKLEQGLKLIKIF 525
           +KPV   RD QEI+LE G +L  +F
Sbjct: 468 HKPVKIGRDGQEIELECGTQLCLLF 492

May be part of a signal transduction pathway that influences splice site selection.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	642
225435800	705	PREDICTED: uncharacterized protein LOC10	0.981	0.893	0.751	0.0
356525319	707	PREDICTED: uncharacterized protein LOC10	0.989	0.898	0.712	0.0
297746505	675	unnamed protein product [Vitis vinifera]	0.937	0.891	0.720	0.0
356525321	659	PREDICTED: uncharacterized protein LOC10	0.914	0.890	0.651	0.0
357519269	677	YTH domain family protein [Medicago trun	0.936	0.887	0.673	0.0
356512580	660	PREDICTED: uncharacterized protein LOC10	0.915	0.890	0.645	0.0
449452630	704	PREDICTED: uncharacterized protein LOC10	0.975	0.889	0.699	0.0
255544682	636	yth domain-containing protein, putative	0.884	0.893	0.619	0.0
118489688	615	unknown [Populus trichocarpa x Populus d	0.873	0.912	0.681	0.0
297739755	694	unnamed protein product [Vitis vinifera]	0.968	0.896	0.603	0.0

>gi|225435800|ref|XP_002285750.1| PREDICTED: uncharacterized protein LOC100253534 [Vitis vinifera]

 Score =  933 bits (2411), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/645 (75%), Positives = 548/645 (84%), Gaps = 15/645 (2%)

Query: 1   MDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMYHHGY 60
           MDP++CYVPNG   +++YYGGYDG   EW+DY+RY++ +GV+M +GVYGDNGSLMYHHGY
Sbjct: 69  MDPSVCYVPNG--YSSYYYGGYDGTTNEWEDYSRYMNPEGVEMPAGVYGDNGSLMYHHGY 126

Query: 61  GYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPH-YFQPITPTSSPYSPSPVAPTPGDIP 119
           GYAPY PY PA SPVPT+G DGQLYGPQHYQYP  YFQP TPTS PY+PSP AP PG++ 
Sbjct: 127 GYAPYGPYPPAGSPVPTVGHDGQLYGPQHYQYPAPYFQPPTPTSGPYNPSPGAPPPGEVT 186

Query: 120 TSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQ--PFNSNNTYGRGSLPGR 177
           TSVAADQKPL VE+ NG SNG+A+ G +KGNNGSAP KPTYQ  PFNSN +YGRG+LPG 
Sbjct: 187 TSVAADQKPLSVETANGNSNGIASGGAMKGNNGSAPVKPTYQNSPFNSNGSYGRGALPGG 246

Query: 178 GPASGYQDPRCNLDGMRSPIPWLDGPVISDARPVASNTFNSSISNVNNVASSRNQNYRPN 237
            PASGYQDPR   DG+RSP+PWLDGPV SD RPV S +  SSISN NNV +SRN   RP+
Sbjct: 247 VPASGYQDPRFAFDGLRSPLPWLDGPVFSDPRPVTSTSITSSISNANNVTASRN--LRPH 304

Query: 238 SHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYDLRTNGRGW 297
           SH+MGL HPRPMSGMG A GFMN  RMYPNKLYGQYGNT RSG+GFGSN YD RTNGR W
Sbjct: 305 SHFMGLQHPRPMSGMGTAHGFMN--RMYPNKLYGQYGNTVRSGLGFGSNAYDSRTNGRSW 362

Query: 298 LSVDGKYKSRGRGNGYFGYGNENMDGLNELNRGPRAKGAKNQKGSAPNALPVKEQNVLTN 357
           L+VD KYK RGRG G+FGYGNENMDGLNELNRGPRAK +KNQKG AP  +  K QNV +N
Sbjct: 363 LAVDNKYKPRGRGIGFFGYGNENMDGLNELNRGPRAKSSKNQKGLAP--VTAKGQNVQSN 420

Query: 358 GTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGN 417
           G+ ++E D+ S+ PDRD+YN ADFP E+T+AKFF+IKSYSEDDVHKSIKY+VWASTPNGN
Sbjct: 421 GSNDEEKDRTSVFPDRDQYNHADFPVEHTEAKFFIIKSYSEDDVHKSIKYNVWASTPNGN 480

Query: 418 KKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFP 477
           KKLDAAY+EAQ+KS  CPVFL FSVNTSGQFVGLAEM G VDF+KNVEYWQQDKW GCF 
Sbjct: 481 KKLDAAYREAQEKSAGCPVFLFFSVNTSGQFVGLAEMVGHVDFHKNVEYWQQDKWNGCFS 540

Query: 478 VKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDD 537
           VKWH+VKDVPNSLLKHITLENNENKPVTNSRDTQE+KLEQGL+++KIFK+H SKTCILDD
Sbjct: 541 VKWHVVKDVPNSLLKHITLENNENKPVTNSRDTQEVKLEQGLQMLKIFKEHCSKTCILDD 600

Query: 538 FGFYETRQKTIQEKKAKQQQFQKQVWEGKPAEEKKELANGELKTQKSSEVASDLVEERTT 597
           F FYE+RQKTIQEKKAKQQQFQKQVWEGKP +EK    NGELK QKS EVASDL++E T 
Sbjct: 601 FAFYESRQKTIQEKKAKQQQFQKQVWEGKPTDEK----NGELKPQKSLEVASDLIKESTP 656

Query: 598 TVQSNGDLRLSENGSVAKTGDAHKGSKPVVVSEKVILANGVANGC 642
            VQ+NGD ++ ENGSVAK+GDA K  KP +VSEK I+ANGVANG 
Sbjct: 657 AVQANGDRKVFENGSVAKSGDAPKAFKPSIVSEKRIVANGVANGV 701

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525319|ref|XP_003531272.1| PREDICTED: uncharacterized protein LOC100819200 isoform 1 [Glycine max]

 Score =  906 bits (2342), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/646 (71%), Positives = 527/646 (81%), Gaps = 11/646 (1%)

Query: 1   MDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMYHHGY 60
           +DP MCY+PNGYPSTA+YYGGYDG   EWDDY+RYV+ +GV+MTSGVYGDNGSL+YHHGY
Sbjct: 69  IDPTMCYLPNGYPSTAYYYGGYDGTGNEWDDYSRYVNSEGVEMTSGVYGDNGSLLYHHGY 128

Query: 61  GYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQPITPTSSPYSPSPVAPTPGDIPT 120
           GYAPY PYSPA SPVPTMG DGQLYGPQHYQYP YFQP+TPTS+P++P+P     G++ T
Sbjct: 129 GYAPYGPYSPAGSPVPTMGNDGQLYGPQHYQYPPYFQPLTPTSAPFTPTPAVLPQGEVST 188

Query: 121 SVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQ--PFNSNNTYGRGSLPGRG 178
           SVAADQKPLPVE+ NG SNGV+N G  KGNN +AP K   Q   F+S  +  R ++PGRG
Sbjct: 189 SVAADQKPLPVEAANGNSNGVSNGGNAKGNNAAAPIKQANQNSSFSSKASNERVAMPGRG 248

Query: 179 PASGYQDPRCNLDGMRSPIPWLDGPVISDA--RPVASNTFNSSISNVNNVASSRNQNYRP 236
           P SGYQDPR   DG+RSPIPWLD P+ SD   RPV+S T  SSIS  NN AS R+Q +RP
Sbjct: 249 PTSGYQDPRFGYDGVRSPIPWLDAPLFSDGQPRPVSSTTITSSISGGNNTAS-RSQTFRP 307

Query: 237 NSHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYDLRTNGRG 296
           NS +MGLHHPRPM  MGA   F+N  RMYPNKLYGQYGNT RSG+G+G++GYD R NGR 
Sbjct: 308 NSQFMGLHHPRPMPAMGATHSFIN--RMYPNKLYGQYGNTVRSGMGYGTHGYDSRANGRA 365

Query: 297 WLSVDGKYKSRGRGNGYFGYGNENMDGLNELNRGPRAKGAKNQKGSAPNALPVKEQNVLT 356
           WL+VD KYK+RGR  GYFGYGNEN+DGLNELNRGPRAKG KNQKG AP  L VK QN+  
Sbjct: 366 WLAVDSKYKTRGRSGGYFGYGNENVDGLNELNRGPRAKGGKNQKGFAPTILAVKGQNLPA 425

Query: 357 NGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNG 416
           +   ++E DK S  PDRD+YNKADFPEEYTDAKFFVIKSYSEDD+HKSIKY+VWAST NG
Sbjct: 426 SLGTDEEKDKTSTVPDRDQYNKADFPEEYTDAKFFVIKSYSEDDIHKSIKYNVWASTQNG 485

Query: 417 NKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCF 476
           NKKLDAAY EAQQK   CPVFL FSVNTSGQFVGLAEM GPVDFNK+VEYWQQDKW GCF
Sbjct: 486 NKKLDAAYHEAQQKPGGCPVFLFFSVNTSGQFVGLAEMIGPVDFNKSVEYWQQDKWNGCF 545

Query: 477 PVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILD 536
           P+KWH+VKDVPN+LL+HITL+NNENKPVTNSRDTQE+ LE GLKLIKIFK++ SKTCILD
Sbjct: 546 PLKWHVVKDVPNNLLRHITLDNNENKPVTNSRDTQEVMLEPGLKLIKIFKEYTSKTCILD 605

Query: 537 DFGFYETRQKTIQEKKAKQQQFQKQVWEGKPAEEKKELANGELKTQKSSEVASDLVEERT 596
           DFGFYE RQKTI EKKAK QQF KQVWEGKPA+EK E+ NGE+ TQK SEV+S++++E  
Sbjct: 606 DFGFYEARQKTILEKKAK-QQFPKQVWEGKPADEKIEI-NGEVNTQK-SEVSSEVLKESL 662

Query: 597 TTVQSNGDLRLSENGSVAKTGDAHKGSKPVVVSEKVILANGVANGC 642
               S+ D ++ ENG   KTGDA KG+KPVV   K++    V+NGC
Sbjct: 663 AEKDSD-DHKVPENGCATKTGDAPKGAKPVVPESKIVANGVVSNGC 707

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746505|emb|CBI16561.3| unnamed protein product [Vitis vinifera]

 Score =  878 bits (2268), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/643 (72%), Positives = 524/643 (81%), Gaps = 41/643 (6%)

Query: 1   MDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMYHHGY 60
           MDP++CYVPNG   +++YYGGYDG   EW+DY+RY++ +GV+M +GVYGDNGSLMYHHGY
Sbjct: 69  MDPSVCYVPNG--YSSYYYGGYDGTTNEWEDYSRYMNPEGVEMPAGVYGDNGSLMYHHGY 126

Query: 61  GYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPH-YFQPITPTSSPYSPSPVAPTPGDIP 119
           GYAPY PY PA SPVPT+G DGQLYGPQHYQYP  YFQP TPTS PY+PSP AP PG++ 
Sbjct: 127 GYAPYGPYPPAGSPVPTVGHDGQLYGPQHYQYPAPYFQPPTPTSGPYNPSPGAPPPGEVT 186

Query: 120 TSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNNTYGRGSLPGRGP 179
           TSVAADQKPL VE+ NG SNG+A+                            G+LPG  P
Sbjct: 187 TSVAADQKPLSVETANGNSNGIAS----------------------------GALPGGVP 218

Query: 180 ASGYQDPRCNLDGMRSPIPWLDGPVISDARPVASNTFNSSISNVNNVASSRNQNYRPNSH 239
           ASGYQDPR   DG+RSP+PWLDGPV SD RPV S +  SSISN NNV +SRN   RP+SH
Sbjct: 219 ASGYQDPRFAFDGLRSPLPWLDGPVFSDPRPVTSTSITSSISNANNVTASRN--LRPHSH 276

Query: 240 YMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYDLRTNGRGWLS 299
           +MGL HPRPMSGMG A GFMN  RMYPNKLYGQYGNT RSG+GFGSN YD RTNGR WL+
Sbjct: 277 FMGLQHPRPMSGMGTAHGFMN--RMYPNKLYGQYGNTVRSGLGFGSNAYDSRTNGRSWLA 334

Query: 300 VDGKYKSRGRGNGYFGYGNENMDGLNELNRGPRAKGAKNQKGSAPNALPVKEQNVLTNGT 359
           VD KYK RGRG G+FGYGNENMDGLNELNRGPRAK +KNQKG AP  +  K QNV +NG+
Sbjct: 335 VDNKYKPRGRGIGFFGYGNENMDGLNELNRGPRAKSSKNQKGLAP--VTAKGQNVQSNGS 392

Query: 360 AEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKK 419
            ++E D+ S+ PDRD+YN ADFP E+T+AKFF+IKSYSEDDVHKSIKY+VWASTPNGNKK
Sbjct: 393 NDEEKDRTSVFPDRDQYNHADFPVEHTEAKFFIIKSYSEDDVHKSIKYNVWASTPNGNKK 452

Query: 420 LDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVK 479
           LDAAY+EAQ+KS  CPVFL FSVNTSGQFVGLAEM G VDF+KNVEYWQQDKW GCF VK
Sbjct: 453 LDAAYREAQEKSAGCPVFLFFSVNTSGQFVGLAEMVGHVDFHKNVEYWQQDKWNGCFSVK 512

Query: 480 WHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFG 539
           WH+VKDVPNSLLKHITLENNENKPVTNSRDTQE+KLEQGL+++KIFK+H SKTCILDDF 
Sbjct: 513 WHVVKDVPNSLLKHITLENNENKPVTNSRDTQEVKLEQGLQMLKIFKEHCSKTCILDDFA 572

Query: 540 FYETRQKTIQEKKAKQQQFQKQVWEGKPAEEKKELANGELKTQKSSEVASDLVEERTTTV 599
           FYE+RQKTIQEKKAKQQQFQKQVWEGKP +EK    NGELK QKS EVASDL++E T  V
Sbjct: 573 FYESRQKTIQEKKAKQQQFQKQVWEGKPTDEK----NGELKPQKSLEVASDLIKESTPAV 628

Query: 600 QSNGDLRLSENGSVAKTGDAHKGSKPVVVSEKVILANGVANGC 642
           Q+NGD ++ ENGSVAK+GDA K  KP +VSEK I+ANGVANG 
Sbjct: 629 QANGDRKVFENGSVAKSGDAPKAFKPSIVSEKRIVANGVANGV 671

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525321|ref|XP_003531273.1| PREDICTED: uncharacterized protein LOC100819200 isoform 2 [Glycine max]

 Score =  807 bits (2084), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/646 (65%), Positives = 485/646 (75%), Gaps = 59/646 (9%)

Query: 1   MDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMYHHGY 60
           +DP MCY+PNGYPSTA+YYGGYDG   EWDDY+RYV+ +GV+MTSGVYGDNGSL+YHHGY
Sbjct: 69  IDPTMCYLPNGYPSTAYYYGGYDGTGNEWDDYSRYVNSEGVEMTSGVYGDNGSLLYHHGY 128

Query: 61  GYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQPITPTSSPYSPSPVAPTPGDIPT 120
           GYAPY PYSPA SPVPTMG DGQLYGPQHYQYP YFQP+TPTS+P++P+P     G++ T
Sbjct: 129 GYAPYGPYSPAGSPVPTMGNDGQLYGPQHYQYPPYFQPLTPTSAPFTPTPAVLPQGEVST 188

Query: 121 SVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQ--PFNSNNTYGRGSLPGRG 178
           SVAADQKPLPVE+ NG SNGV+N G  KGNN +AP K   Q   F+S  +  R ++PGRG
Sbjct: 189 SVAADQKPLPVEAANGNSNGVSNGGNAKGNNAAAPIKQANQNSSFSSKASNERVAMPGRG 248

Query: 179 PASGYQDPRCNLDGMRSPIPWLDGPVISDA--RPVASNTFNSSISNVNNVASSRNQNYRP 236
           P SGYQDPR   DG+RSPIPWLD P+ SD   RPV+S T  SSIS  NN AS R+Q +RP
Sbjct: 249 PTSGYQDPRFGYDGVRSPIPWLDAPLFSDGQPRPVSSTTITSSISGGNNTAS-RSQTFRP 307

Query: 237 NSHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYDLRTNGRG 296
           NS +MGLHHPRPM  MGA   F+N  RMYPNKLYGQYGNT RSG+G+G++GYD R NGR 
Sbjct: 308 NSQFMGLHHPRPMPAMGATHSFIN--RMYPNKLYGQYGNTVRSGMGYGTHGYDSRANGRA 365

Query: 297 WLSVDGKYKSRGRGNGYFGYGNENMDGLNELNRGPRAKGAKNQKGSAPNALPVKEQNVLT 356
           WL+VD KYK+RGR  GYFGYGNEN+DGLNELNRGPRAKG KNQKG AP  L VK QN+  
Sbjct: 366 WLAVDSKYKTRGRSGGYFGYGNENVDGLNELNRGPRAKGGKNQKGFAPTILAVKGQNLPA 425

Query: 357 NGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNG 416
           +   ++E DK S  PDRD+YNKADFPEEYTDAKFFVIKSYSEDD+HKSIKY+VWAST NG
Sbjct: 426 SLGTDEEKDKTSTVPDRDQYNKADFPEEYTDAKFFVIKSYSEDDIHKSIKYNVWASTQNG 485

Query: 417 NKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCF 476
           NKKLDAAY EAQQK   CPVFL FSVNTSGQFVGLAEM GPVDFNK+VEYWQQDKW GCF
Sbjct: 486 NKKLDAAYHEAQQKPGGCPVFLFFSVNTSGQFVGLAEMIGPVDFNKSVEYWQQDKWNGCF 545

Query: 477 PVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILD 536
           P+KWH+VKDVPN+LL+HITL+NNENKPVTNSRDTQE                        
Sbjct: 546 PLKWHVVKDVPNNLLRHITLDNNENKPVTNSRDTQE------------------------ 581

Query: 537 DFGFYETRQKTIQEKKAKQQQFQKQVWEGKPAEEKKELANGELKTQKSSEVASDLVEERT 596
                                    VWEGKPA+EK E+ NGE+ TQK SEV+S++++E  
Sbjct: 582 -------------------------VWEGKPADEKIEI-NGEVNTQK-SEVSSEVLKESL 614

Query: 597 TTVQSNGDLRLSENGSVAKTGDAHKGSKPVVVSEKVILANGVANGC 642
               S+ D ++ ENG   KTGDA KG+KPVV   K++    V+NGC
Sbjct: 615 AEKDSD-DHKVPENGCATKTGDAPKGAKPVVPESKIVANGVVSNGC 659

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519269|ref|XP_003629923.1| YTH domain family protein [Medicago truncatula] gi|355523945|gb|AET04399.1| YTH domain family protein [Medicago truncatula]

 Score =  806 bits (2083), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/653 (67%), Positives = 498/653 (76%), Gaps = 52/653 (7%)

Query: 1   MDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNGS-LMYHHG 59
           MDP MCY+PNG    ++YYGGYDG   EW+    Y++ DGVD+TSGVYGDNGS L+YHHG
Sbjct: 66  MDPAMCYLPNG--YPSYYYGGYDGTGSEWE----YLNADGVDLTSGVYGDNGSSLVYHHG 119

Query: 60  YGYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQPITPTSSPYSPSPVAPTPGDIP 119
           YGYAPY PYSPA SPVPTMG DGQLYGPQHYQYP +FQP+TPTS P++P+  A   GD  
Sbjct: 120 YGYAPYAPYSPAGSPVPTMGNDGQLYGPQHYQYPPFFQPLTPTSGPFTPTSAAHPQGDNS 179

Query: 120 TSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNNTYGRGSLPGRGP 179
           TSVAADQKPL VE+ NG +N   N    KG                           R P
Sbjct: 180 TSVAADQKPLSVEAANGNTNAGTNGVNAKG---------------------------RTP 212

Query: 180 ASG-YQDPRCNLDGMRSPIPWLDGPVISDA--RPVASNTFNSSISNVNNVASSRNQNYRP 236
            SG YQDPR   DG RSP  WLD P+ SD   RPV+S   +SSIS+ NN  +SRNQ YRP
Sbjct: 213 TSGGYQDPRYGFDGARSPNLWLDTPIFSDGQPRPVSSTVISSSISSGNNGTASRNQTYRP 272

Query: 237 NSHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYDLRTNGRG 296
           NS YMGLHHPRP+  MGA  GF+N  RMYPN  YGQYGN+ RSG+G+G++GYD RTNGR 
Sbjct: 273 NSQYMGLHHPRPIPAMGATPGFIN--RMYPNTRYGQYGNSVRSGMGYGTHGYDSRTNGRA 330

Query: 297 WLSVDGKYKSRGRGNGYFGYGNENMDGLNELNRGPRAKGAKNQKGSAPNALPVKEQNVLT 356
           WL+VD KYK+RGR  GYFGYGNEN DGLNELNRGPRAKG KNQK   P  L VK QNV  
Sbjct: 331 WLAVDNKYKTRGRNGGYFGYGNENTDGLNELNRGPRAKGGKNQKVFVPTVLTVKGQNVPV 390

Query: 357 NGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNG 416
           N T ++E +K S +PDR++YNKADFPEEYTDAKFFVIKSYSEDD+HKSIKY+VWAST NG
Sbjct: 391 N-TVDEEKEKNSTTPDREQYNKADFPEEYTDAKFFVIKSYSEDDIHKSIKYNVWASTQNG 449

Query: 417 NKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCF 476
           NKKLDAAYQEAQQKS  CP+FLLFSVNTSGQFVGLAEM GPVDFNK++EYWQQDKW GCF
Sbjct: 450 NKKLDAAYQEAQQKSGGCPIFLLFSVNTSGQFVGLAEMTGPVDFNKSLEYWQQDKWMGCF 509

Query: 477 PVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILD 536
           P+KWHIVKDVPN++L+HITLENNENKPVTNSRDTQEI LE GLKL+KIFK++ SKTCILD
Sbjct: 510 PLKWHIVKDVPNNVLRHITLENNENKPVTNSRDTQEIMLEPGLKLLKIFKEYSSKTCILD 569

Query: 537 DFGFYETRQKTIQEKKAKQQQFQKQ-------VWEGKPAEEKKELANGELKTQKSSEVAS 589
           DFGFYE RQKTI EKKAK QQF KQ       VWEGKP +EK E+ NGE  TQK SEV S
Sbjct: 570 DFGFYEGRQKTILEKKAK-QQFPKQARLSTIPVWEGKPTDEKIEV-NGETNTQK-SEVNS 626

Query: 590 DLVEERTTTVQSNGDLRLSENGSVAKTGDAHKGSKPVVVSEKVILANGVANGC 642
           +L++E +T  + N D + SENG+V  TGDA KG+KP VVSE  I+ NGVANGC
Sbjct: 627 ELLKE-STLAKDNDDNKHSENGAVPTTGDAPKGAKP-VVSESKIVPNGVANGC 677

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512580|ref|XP_003524996.1| PREDICTED: uncharacterized protein LOC100807919 [Glycine max]

 Score =  793 bits (2048), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/646 (64%), Positives = 480/646 (74%), Gaps = 58/646 (8%)

Query: 1   MDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMYHHGY 60
           +DP MCY+PNGYPSTA+YYGGYDG   EWD+Y+RYV+ +GV+MTSGVYGDNGSL+YHHGY
Sbjct: 69  IDPTMCYLPNGYPSTAYYYGGYDGTGNEWDEYSRYVNSEGVEMTSGVYGDNGSLLYHHGY 128

Query: 61  GYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQPITPTSSPYSPSPVAPTPGDIPT 120
           GYAPY PYSPA SPVPTMG DGQLYGPQHYQYP YFQP+TPTS+P++P+P     G++ T
Sbjct: 129 GYAPYGPYSPAGSPVPTMGNDGQLYGPQHYQYPPYFQPLTPTSAPFTPTPAVLPQGEVST 188

Query: 121 SVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQ--PFNSNNTYGRGSLPGRG 178
           SVAADQKPLPV++ NG SNGVAN G  KGNN +A  K   Q   F+S  +  R ++PGRG
Sbjct: 189 SVAADQKPLPVDAANGNSNGVANGGNAKGNNAAASIKQANQNSSFSSKASNERVTMPGRG 248

Query: 179 PASGYQDPRCNLDGMRSPIPWLDGPVISDA--RPVASNTFNSSISNVNNVASSRNQNYRP 236
           P SGYQDPR   DG+RSPIPWLD P+ SD   RPV+S T  SSIS  NN AS RN  +RP
Sbjct: 249 PTSGYQDPRFGFDGVRSPIPWLDAPLFSDGQPRPVSSTTITSSISGGNNTAS-RNPTFRP 307

Query: 237 NSHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYDLRTNGRG 296
           NS +MGLHHPRPM  MGA   F+N  RMYP+KLYGQYGNT RSG+G+G++GYD RTNGR 
Sbjct: 308 NSQFMGLHHPRPMPAMGATHSFIN--RMYPSKLYGQYGNTVRSGMGYGTHGYDSRTNGRA 365

Query: 297 WLSVDGKYKSRGRGNGYFGYGNENMDGLNELNRGPRAKGAKNQKGSAPNALPVKEQNVLT 356
           WL+VD KYK+RGR  GYFGYGNEN DGLNELNRGPRAKG KNQKG AP  L VK Q +  
Sbjct: 366 WLAVDSKYKTRGRSGGYFGYGNENADGLNELNRGPRAKGGKNQKGFAPTILAVKGQTLPA 425

Query: 357 NGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNG 416
               ++E DK S   + D+YNKADFPEEYTDAKFFVIKSYSEDD+HKSIKY+VWAST NG
Sbjct: 426 TLGTDEEKDKTSTILECDQYNKADFPEEYTDAKFFVIKSYSEDDIHKSIKYNVWASTQNG 485

Query: 417 NKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCF 476
           NKKLDAAYQEAQQK    PVFL FSVNTSGQFVGLAEM GPVDFNK+VEYWQQDKW GCF
Sbjct: 486 NKKLDAAYQEAQQKPGGTPVFLFFSVNTSGQFVGLAEMIGPVDFNKSVEYWQQDKWNGCF 545

Query: 477 PVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILD 536
           P+KWHIVKDVPN+LL+HITL+NNENKPVTNSRDTQE                        
Sbjct: 546 PLKWHIVKDVPNNLLRHITLDNNENKPVTNSRDTQE------------------------ 581

Query: 537 DFGFYETRQKTIQEKKAKQQQFQKQVWEGKPAEEKKELANGELKTQKSSEVASDLVEERT 596
                                    VWEGKPA+EK E+ NGE+ TQK SEV+S+L++E T
Sbjct: 582 -------------------------VWEGKPADEKIEI-NGEVNTQK-SEVSSELLKEST 614

Query: 597 TTVQSNGDLRLSENGSVAKTGDAHKGSKPVVVSEKVILANGVANGC 642
              + + D ++ ENGS  KTGDA KG+KPVV   K++    V+NG 
Sbjct: 615 LAEKDSDDHKVPENGSATKTGDAPKGAKPVVPESKIVANGVVSNGV 660

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452630|ref|XP_004144062.1| PREDICTED: uncharacterized protein LOC101215929 [Cucumis sativus] gi|449493566|ref|XP_004159352.1| PREDICTED: uncharacterized LOC101215929 [Cucumis sativus]

 Score =  773 bits (1997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/649 (69%), Positives = 521/649 (80%), Gaps = 23/649 (3%)

Query: 1   MDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMYHHGY 60
           MDP+MCY+PNGYPS  +YYGG+DG   +WDDY+RY + DGV+MTSGVYGDNGSLMYHHGY
Sbjct: 70  MDPSMCYLPNGYPS--YYYGGFDGTANDWDDYSRYTNSDGVEMTSGVYGDNGSLMYHHGY 127

Query: 61  GYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQPITPTS--SPYSPSPVAPTPGDI 118
           GY PY PYSPA SPVP+MG DGQLYGPQHYQYP YFQP+TPTS     SP+ V PT GDI
Sbjct: 128 GYGPYGPYSPAASPVPSMGNDGQLYGPQHYQYPPYFQPLTPTSGPYTPSPTTVPPTQGDI 187

Query: 119 PTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQ--PFNSNNTYGRGSLPG 176
            TS A +QKP+PVE+TN    G+ N GG KGNNGSAP K +YQ   F SN  Y RG+LPG
Sbjct: 188 STSAATEQKPIPVETTNTNGTGLTNGGGTKGNNGSAPLKSSYQNSTFGSN-AYARGALPG 246

Query: 177 RGPASGYQDPRCNLDGMRSPIPWLDGPVISD--ARPVASNTFNSSISNVNNVASSRNQNY 234
             PASGYQDPR   DG+R+  PW DGP+ SD  +R V+S+T  SSISN NN+ SSR+ ++
Sbjct: 247 HIPASGYQDPRYGYDGLRNSFPWSDGPLYSDGQSRLVSSSTITSSISNANNIPSSRSPSF 306

Query: 235 RPNSHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYDLRTNG 294
           RP SHY+G  HPRPMSGM   QG++N  RMYPNKLYGQ+GNT RSGVGF S+GYD R+NG
Sbjct: 307 RPGSHYVGFPHPRPMSGMNTTQGYIN--RMYPNKLYGQFGNTVRSGVGFASHGYDSRSNG 364

Query: 295 RGWLSVDGKYKSRGRGNGYFGYGNENMDGLNELNRGPRAKGAKNQKGSAPNALPVKEQNV 354
           R WL+VD K+K RGR  GY+GYGNENMDGLNELNRGPRAKG+KNQKG  P+ L VK Q +
Sbjct: 365 RVWLAVDNKFKPRGRNGGYYGYGNENMDGLNELNRGPRAKGSKNQKGFVPSVLAVKGQLL 424

Query: 355 L-TNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWAST 413
              N T E+E DK+S +PDRD+YNK+DFPEEY +AKFFVIKSYSEDDVHKSIKY+VWAST
Sbjct: 425 PPMNATDEEEKDKVS-TPDRDQYNKSDFPEEYAEAKFFVIKSYSEDDVHKSIKYNVWAST 483

Query: 414 PNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWT 473
           PNGNKKLDAAYQEAQ+K+  CP+FL FSVNTSGQFVGLAEM GPVDF KN+EYWQQDKW 
Sbjct: 484 PNGNKKLDAAYQEAQEKAGGCPIFLFFSVNTSGQFVGLAEMIGPVDFQKNLEYWQQDKWN 543

Query: 474 GCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTC 533
           GCFPVKWH+VKDVPNSLLKHI LENNENKPVTNSRDTQE+KLE GLK++KIFK+H SKTC
Sbjct: 544 GCFPVKWHVVKDVPNSLLKHIILENNENKPVTNSRDTQEVKLEPGLKMVKIFKEHVSKTC 603

Query: 534 ILDDFGFYETRQKTIQEKKAKQQQFQKQVWEGKPAEEKKELAN-GELKTQKSSEVASDLV 592
           ILDDFGFYE RQKTIQEKKAKQQQF+KQVWEGKP +EKKE++   ++KT K  E  +DLV
Sbjct: 604 ILDDFGFYEARQKTIQEKKAKQQQFKKQVWEGKPTDEKKEVSEVVDVKTPKPVEATNDLV 663

Query: 593 EERTTTVQSNGDLRLSENGSVAKTGDAHKGSKPVVVSEKVILANGVANG 641
           +E T         ++SENGSV KT DA KGS   V +      +GVANG
Sbjct: 664 KEET---------KISENGSVLKTVDAPKGSAKPVTTTPSEKRSGVANG 703

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544682|ref|XP_002513402.1| yth domain-containing protein, putative [Ricinus communis] gi|223547310|gb|EEF48805.1| yth domain-containing protein, putative [Ricinus communis]

 Score =  748 bits (1932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/642 (61%), Positives = 456/642 (71%), Gaps = 74/642 (11%)

Query: 1   MDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMYHHGY 60
           MDP +CY+PNGYPS A+YYG Y+G   EWDDY+RY + +GV+MTSGVYGDNGS+M+H+GY
Sbjct: 69  MDPTVCYLPNGYPSPAYYYGSYNGTGSEWDDYSRYANTEGVEMTSGVYGDNGSVMFHNGY 128

Query: 61  GYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQPITPTSSPYSPSPVAPTPGDIPT 120
           GYAPY PYSPA SPVPTMG DGQLYGPQHYQYP YFQP+ PTS P++P+    + G+  T
Sbjct: 129 GYAPYGPYSPAASPVPTMGNDGQLYGPQHYQYPPYFQPLNPTSGPFTPTQPTNSQGEPCT 188

Query: 121 SVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNNTYGRGSLPGRGPA 180
           S A DQKP+ V++T     G+ N GGVKGNNGS P+KP YQ  +S + YGRG LPG  P 
Sbjct: 189 SAAPDQKPISVDATKSNCTGIVNGGGVKGNNGSTPYKPIYQ-NSSLSAYGRGVLPGGIPG 247

Query: 181 SGYQDPRCNLDGMRSPIPWLDGPVISDARPVASNTFNSSISNVNNVASSRNQNYRPNSHY 240
           SGYQDPR   DG                R      F+ S    NN  SS+N N+R NS++
Sbjct: 248 SGYQDPRLGFDGQY--------------RSTGITPFSKS----NNTPSSKNNNFRHNSNF 289

Query: 241 MGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYDLRTNGRGWLSV 300
           MGL H  P+SG+G+  GF+N  RMY NK Y QYGNT+RSG+GFGS GYD R N  GWL+V
Sbjct: 290 MGLQHSGPISGVGSTHGFIN--RMYQNKFYSQYGNTYRSGMGFGSGGYDSRMNAHGWLAV 347

Query: 301 DGKYKSRGRGNGYFGYGNENMDGLNELNRGPRAKGAKNQKGSAPNALPVKEQNVLTNGTA 360
           DGKYK RGRGN YFGY NEN+DGLNELNRGPRAKG KNQKG AP  + VK QN     T 
Sbjct: 348 DGKYKPRGRGNNYFGYRNENIDGLNELNRGPRAKGFKNQKGFAPVTIAVKGQNTPPIETI 407

Query: 361 EDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKL 420
            +E D++S  PD ++YN+ADF E+YTDAKFF+IKSYSEDDVHKSIKY+VWASTPNGNKKL
Sbjct: 408 TEEKDEMSAVPDLEQYNRADFLEDYTDAKFFIIKSYSEDDVHKSIKYNVWASTPNGNKKL 467

Query: 421 DAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKW 480
           DAAYQEAQQKS  CPVFL FSVNTSGQFVGLAEM GPVDF+KNVEYWQQDKWTGCFPVKW
Sbjct: 468 DAAYQEAQQKSGGCPVFLFFSVNTSGQFVGLAEMGGPVDFHKNVEYWQQDKWTGCFPVKW 527

Query: 481 HIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGF 540
           HIVKD+PNSLLKHITLENNENKPVTNSRDTQEI                           
Sbjct: 528 HIVKDIPNSLLKHITLENNENKPVTNSRDTQEI--------------------------- 560

Query: 541 YETRQKTIQEKKAKQQQFQKQVWEGKPAEEKKELANGELKTQKSSEVASDLVEERTTTVQ 600
                                  EG+P +EKKEL NG   + +S EV SD+ +E +  VQ
Sbjct: 561 ----------------------LEGRPGDEKKELVNG---SHESPEVVSDVTKEPSPVVQ 595

Query: 601 SNGDLRLSENGSVAKTGDAHKGSKPVVVSEKVILANGVANGC 642
           SNGDL+  ENGS+AKTGD  K SKP V SEK I ANGVANGC
Sbjct: 596 SNGDLKHLENGSIAKTGDDSKASKP-VASEKRITANGVANGC 636

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489688|gb|ABK96645.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  744 bits (1920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/580 (68%), Positives = 453/580 (78%), Gaps = 19/580 (3%)

Query: 1   MDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMYHHGY 60
           MDP +CY+PNGYPS      G     GEWDDY++Y++ +GVDMTSG    NGS MY HGY
Sbjct: 51  MDPTVCYLPNGYPSYY---YGGYNGTGEWDDYSKYLNTEGVDMTSG----NGSAMYPHGY 103

Query: 61  GYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPH-YFQPITPTSSPYSPSPVAPTPGDIP 119
            Y PY PYSPA SPVPTMG DGQLYGPQHYQYP  YFQP+TPTS P+ PS VAP+ GD+ 
Sbjct: 104 WYGPYGPYSPAASPVPTMGNDGQLYGPQHYQYPTPYFQPLTPTSEPFIPSHVAPSQGDLS 163

Query: 120 TSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNNTYGRGSLPGRGP 179
            + AADQK LPVE+    SNG+AN G VKG NG+ P+KP YQ     N+YGRGS     P
Sbjct: 164 ITTAADQKSLPVETGKENSNGIANGGDVKGANGAVPYKPKYQ-----NSYGRGSYTKGIP 218

Query: 180 ASGYQDPRCNLDGMRSPIPWLDGPVISDARPVASNT-FNSSISNVNNVASSRNQNYRPNS 238
           ASGY+D R   D ++  IP LD  V+SD   +  NT  +SS S  +N  SSRNQN+  NS
Sbjct: 219 ASGYKDLRSCFDRLQPDIPLLDSSVLSDG--LYRNTDISSSFSKASNAPSSRNQNFHQNS 276

Query: 239 HYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYDLRTNGRGWL 298
           H+MG  HP   SGMG+  G+MN  RMY NKLYGQYGN F+SGVGFGS GY+   NG+GWL
Sbjct: 277 HFMGWQHPGLASGMGSTHGYMN--RMYSNKLYGQYGNGFKSGVGFGSGGYNAGINGQGWL 334

Query: 299 SVDGKYKSRGRGNGYFGYGNENMDGLNELNRGPRAKG-AKNQKGSAPNALPVKEQNVLTN 357
            +D KYK +G+GNGYFG+ NEN+DGLNELNRGPRAKG  KNQKG  P+ + VK Q+V ++
Sbjct: 335 PIDSKYKPKGQGNGYFGFRNENIDGLNELNRGPRAKGYFKNQKGFVPSTVAVKGQSVPSS 394

Query: 358 GTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGN 417
               +E DK +  PDR++YNKADFP EY DAKFF+IKSYSEDDVHK IKY+VWASTPNGN
Sbjct: 395 DANAEEKDKTTEVPDREQYNKADFPVEYVDAKFFIIKSYSEDDVHKCIKYNVWASTPNGN 454

Query: 418 KKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFP 477
           KKLDAAYQEA QKS  CPVFLLFSVNTSGQFVGLAEM G VDF+K+VEYWQQDKWTG FP
Sbjct: 455 KKLDAAYQEAGQKSGGCPVFLLFSVNTSGQFVGLAEMTGRVDFDKSVEYWQQDKWTGYFP 514

Query: 478 VKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDD 537
           VKWH VKDVPNSLLKHITLENNENKPVTNSRDTQE+KLEQGL++IKIFK+H SKTCILDD
Sbjct: 515 VKWHFVKDVPNSLLKHITLENNENKPVTNSRDTQEVKLEQGLEMIKIFKEHSSKTCILDD 574

Query: 538 FGFYETRQKTIQEKKAKQQQFQKQVWEGKPAEEKKELANG 577
           FGFYE R+K IQEKKAKQQQ +KQVW+GKP++EKKEL NG
Sbjct: 575 FGFYEDREKMIQEKKAKQQQLKKQVWDGKPSDEKKELVNG 614

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739755|emb|CBI29937.3| unnamed protein product [Vitis vinifera]

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/651 (60%), Positives = 476/651 (73%), Gaps = 29/651 (4%)

Query: 1   MDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMYHHGY 60
           +DPNMCY+PNGYPST ++  GYDG + EW D        GV+M  GVYGD    +YHHG+
Sbjct: 64  VDPNMCYLPNGYPSTYYFAPGYDGQMNEWGD--------GVEMPPGVYGD----IYHHGF 111

Query: 61  GYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPH-YFQPITPTSSPYSPSPVAPTPGDIP 119
           GY PY  Y P  SPVPTMG DGQLYGPQHYQYP  Y+QP  P   PY+PS V    GD+ 
Sbjct: 112 GY-PYGTYPPPGSPVPTMGHDGQLYGPQHYQYPTPYYQPQAPNGGPYAPSQVTAPQGDVS 170

Query: 120 TSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQ--PFNSNNTYGRGSLPGR 177
           TSVA DQ PL VE+  G +N + N G V GNNG    +P++Q    +SN +YGR SLP  
Sbjct: 171 TSVAPDQVPLSVEAAKGNTNNLVNGGNVNGNNGPKALRPSHQNSSLSSNGSYGRASLPTG 230

Query: 178 GPASGYQDPRCNLDGMRSPIPWLDGPVISDARPVASNTFNSSISNVNNVASSRNQNYRPN 237
            P+SGYQDPR   DG RS IP  D      ++ VAS  F+S +S+ NN  S RNQN+RP 
Sbjct: 231 VPSSGYQDPRFGFDGTRSLIPSADMFSEGQSKHVASVGFSSPVSHANNFPSGRNQNFRPI 290

Query: 238 SHYMGLHHPRPMSGMGAAQGFMNMNRMYPN-KLYGQYGNTFRSGVGFGSNGYDLRTNGRG 296
              M   H R  SG+G A GFM+  RMYPN ++Y QYGN FR+G GFGSNGYD RT+GRG
Sbjct: 291 PQLM---HARAASGLGQASGFMS--RMYPNNRMYDQYGNAFRTGSGFGSNGYDSRTSGRG 345

Query: 297 WLSVDGKYKSRGRGNGYFGYGNENMDGLNELNRGPRAKGAKNQKGSAPNALPVKEQNVLT 356
           WL+VD +Y+++ R N   GYGNENMDGLNELNRGPRAKG KNQKG  P  L V+ QN+  
Sbjct: 346 WLTVDSRYRNKSRANSVLGYGNENMDGLNELNRGPRAKGFKNQKGFGPVTLAVRGQNLQL 405

Query: 357 NGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNG 416
           NG   + +  ++L PD+++YN  DFPE Y+DAKFF+IKSYSEDDVHKSIKY++WAST NG
Sbjct: 406 NGNNSNSDGNLTLVPDKEQYNSEDFPENYSDAKFFIIKSYSEDDVHKSIKYNMWASTANG 465

Query: 417 NKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCF 476
           NKKLDAAYQEAQ KS SCP+FLLFSVN SGQFVG+AEM G VDFN+++EYWQQDKWTGCF
Sbjct: 466 NKKLDAAYQEAQGKSGSCPIFLLFSVNASGQFVGVAEMVGSVDFNRSLEYWQQDKWTGCF 525

Query: 477 PVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILD 536
           PVKWH++KD+PNSLLKHITLENNENKPVTNSRDTQE+K EQG++++KIFK+H SKT ILD
Sbjct: 526 PVKWHVIKDIPNSLLKHITLENNENKPVTNSRDTQEVKFEQGIQVLKIFKNHSSKTTILD 585

Query: 537 DFGFYETRQKTIQEKKAKQQQFQKQ----VWEGKPAEEKKELANGELKTQKSSEVASDLV 592
           DFGFYE RQ+T+QEKKAKQQ FQKQ    V + KP +      + + +  +S +VAS L+
Sbjct: 586 DFGFYEARQRTMQEKKAKQQLFQKQARILVRDVKPTD--GVATDDKDRLHQSVDVASSLI 643

Query: 593 EERTTTVQSNGDLR-LSENGSVAKTGDAHKGSKPVVVSEKVILANGVANGC 642
           +E T  V++NG+L+ L E GS A   DA K +KP V+SEK ++ NGVAN C
Sbjct: 644 KEPTGPVKANGELKALEEIGSAAVADDAPKSAKPDVLSEKRVVPNGVANAC 694

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	642
TAIR|locus:2092815	667	ECT2 "evolutionarily conserved	0.919	0.884	0.532	1.2e-163
TAIR|locus:2159391	495	ECT3 "AT5G61020" [Arabidopsis	0.470	0.610	0.631	3.5e-105
TAIR|locus:2095938	428	ECT1 "evolutionarily conserved	0.467	0.700	0.548	1e-90
TAIR|locus:2089280	634	ECT5 "AT3G13060" [Arabidopsis	0.451	0.457	0.515	2.4e-89
TAIR|locus:2023807	639	ECT7 "AT1G48110" [Arabidopsis	0.336	0.338	0.580	8.8e-74
TAIR|locus:2088995	595	ECT6 "AT3G17330" [Arabidopsis	0.328	0.354	0.601	6e-72
TAIR|locus:2207405	528	ECT8 "AT1G79270" [Arabidopsis	0.344	0.418	0.573	2e-71
TAIR|locus:2161213	528	ECT10 "evolutionarily conserve	0.319	0.388	0.544	5.3e-69
TAIR|locus:2010494	539	ECT9 "AT1G27960" [Arabidopsis	0.280	0.333	0.651	6.8e-65
TAIR|locus:2024286	470	ECT11 "AT1G09810" [Arabidopsis	0.330	0.451	0.554	3.8e-62

TAIR|locus:2092815 ECT2 "evolutionarily conserved C-terminal region 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1593 (565.8 bits), Expect = 1.2e-163, P = 1.2e-163
 Identities = 331/622 (53%), Positives = 390/622 (62%)

Query:     2 DPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMXXXXXX 61
             DP++CYVPN Y +   YY  Y G+  EW DY  Y + +GVDM SG+YG+NG+++      
Sbjct:    67 DPSVCYVPNPY-NPYQYYNVY-GSGQEWTDYPAYTNPEGVDMNSGIYGENGTVVYPQGYG 124

Query:    62 XXXXXXXXXXXXXXXXMGTDGQLYGPQHYQYPHYFQXXXXXXXXXXXXXXXXXXGDIPTS 121
                             +G +GQLYG Q YQYP+YF                    + P  
Sbjct:   125 YAAYPYSPATSPAPQ-LGGEGQLYGAQQYQYPNYFPNSGPYASSVATPTQPDLSANKPAG 183

Query:   122 VAADQKPLPVESTNGKSXXXXXXXXXXXXXXSAPFKPTYQP-FN-SNNTYGRGSLPGRGP 179
             V    K LP +S N  S              SAP KPT Q   N S+N YG G+ PG G 
Sbjct:   184 V----KTLPADSNNVASAAGITKGSNG----SAPVKPTNQATLNTSSNLYGMGA-PGGGL 234

Query:   180 ASGYQDPRCNLDGMRSPIPWLDGPVISDA-RPVAXXXXXXXXXXXXXXXXXXXXXYRPNS 238
             A+GYQDPR   +G  +P+PW DG   SD  RPV+                     YR NS
Sbjct:   235 AAGYQDPRYAYEGYYAPVPWHDGSKYSDVQRPVSGSGVASSYSKSSTVPSSRNQNYRSNS 294

Query:   239 HYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYDLRTNGRGWL 298
             HY  +H P  ++G G AQG+ N  RMY NKLYGQYG+T RS +G+GS+GYD RTNGRGW 
Sbjct:   295 HYTSVHQPSSVTGYGTAQGYYN--RMYQNKLYGQYGSTGRSALGYGSSGYDSRTNGRGWA 352

Query:   299 SVDGKYKSXXXXXXXXXXXXENMDGLNELNRGPRAKGAKNQKGSAPNALPVKEQNVLTNG 358
             + D KY+S             N+DGLNELNRGPRAKG KNQKG+  ++L VKEQ   +N 
Sbjct:   353 ATDNKYRSWGRGNSYYYGNENNVDGLNELNRGPRAKGTKNQKGNLDDSLEVKEQTGESNV 412

Query:   359 TAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNK 418
             T   E D   + PDR++YNK DFP +Y +A FF+IKSYSEDDVHKSIKY+VWASTPNGNK
Sbjct:   413 TEVGEADNTCVVPDREQYNKEDFPVDYANAMFFIIKSYSEDDVHKSIKYNVWASTPNGNK 472

Query:   419 KLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPV 478
             KL AAYQEAQQK+  CP+FL FSVN SGQFVGLAEM GPVDFN NVEYWQQDKWTG FP+
Sbjct:   473 KLAAAYQEAQQKAGGCPIFLFFSVNASGQFVGLAEMTGPVDFNTNVEYWQQDKWTGSFPL 532

Query:   479 KWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDF 538
             KWHIVKDVPNSLLKHITLENNENKPVTNSRDTQE+KLEQGLK++KIFK+H SKTCILDDF
Sbjct:   533 KWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEVKLEQGLKIVKIFKEHSSKTCILDDF 592

Query:   539 GFYETRQKTIXXXXXXXXXXXXXVWEGKPAEEKKELANGELKTQKSSEVASDLVEERTTT 598
              FYE RQKTI             V E K  +EKKE A  E    K S  A          
Sbjct:   593 SFYEVRQKTILEKKAKQTQKQ--VSEEKVTDEKKESATAE-SASKESPAA---------- 639

Query:   599 VQSNGDLRLSENGSVAK--TGD 618
             VQ++ D++++ENGSVAK  TGD
Sbjct:   640 VQTSSDVKVAENGSVAKPVTGD 661

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2159391 ECT3 "AT5G61020" [Arabidopsis thaliana (taxid:3702)]

 Score = 990 (353.6 bits), Expect = 3.5e-105, Sum P(3) = 3.5e-105
 Identities = 199/315 (63%), Positives = 229/315 (72%)

Query:   235 RPNSHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYDLRTNG 294
             + N  Y  L      +G G + G   M+ +Y N  YG  G  + +G G+GS GYD     
Sbjct:   119 KTNLQYQYLTQQGRSAGNGQSYGGY-MDNIYSN--YGMCG-PYTNGYGYGSYGYDSWKYM 174

Query:   295 RGWLSVDGKYKSXXXXXXXXXXXXENMDGLNELNRGPRAKGAKNQKGSAPNALPVKEQNV 354
               W +V+  YK             EN++GLNE+NRGPRAKG  +Q GS   A+ +KEQ V
Sbjct:   175 PNWYAVNNTYKPRNGYHGYGK---ENIEGLNEMNRGPRAKGFNSQDGSKVMAVSLKEQRV 231

Query:   355 L-TNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWAST 413
               T   +ED    +SL   +D YNK DFPE YT+AKF+VIKSYSEDD+HKSIKYSVW+ST
Sbjct:   232 TETEKLSED----VSLLDPKD-YNKIDFPETYTEAKFYVIKSYSEDDIHKSIKYSVWSST 286

Query:   414 PNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWT 473
             PNGNKKLDA+Y EA+QKS  CPVFLLFSVNTSGQFVGLAEM GPVDFNK VEYWQQDKW 
Sbjct:   287 PNGNKKLDASYNEAKQKSDGCPVFLLFSVNTSGQFVGLAEMVGPVDFNKTVEYWQQDKWI 346

Query:   474 GCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTC 533
             GCFPVKWH VKD+PNS L+HITLENNENKPVTNSRDTQE+KLEQG+K+IKIFKDH SKTC
Sbjct:   347 GCFPVKWHFVKDIPNSSLRHITLENNENKPVTNSRDTQEVKLEQGIKVIKIFKDHASKTC 406

Query:   534 ILDDFGFYETRQKTI 548
             ILDDF FYE RQK I
Sbjct:   407 ILDDFEFYENRQKII 421

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2095938 ECT1 "evolutionarily conserved C-terminal region 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 867 (310.3 bits), Expect = 1.0e-90, Sum P(2) = 1.0e-90
 Identities = 175/319 (54%), Positives = 207/319 (64%)

Query:   234 YRPNSHYMGLHH---PRPMSGMGAAQGFMNMNRMYPNK-LYGQYGNTFRSGVGFGSNGYD 289
             Y  NS++    H   P     + +       + +Y N  LYG YGN   SG  +G+ GYD
Sbjct:   102 YDRNSNHSSFSHLMNPHSSQEVPSFDQLGYNDHLYSNHGLYGLYGNVIDSGHAYGTFGYD 161

Query:   290 LRTNGRGWLSVDGKYKSXXXXXXXXXXXXENMDGLNELNRGPRAKGAKNQKGSAPNALPV 349
                 GRGW  VDG Y+             E  D LNEL RGPR+   KN +         
Sbjct:   162 SWKLGRGWYPVDG-YRKTRSFNHGRGYSDEKADRLNELCRGPRSSDFKNPQ--------- 211

Query:   350 KEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSV 409
                 VL +   +     +S + D   YN  +FPE +  AKFFVIKSYSEDDVH  IKY  
Sbjct:   212 ----VLNSSMLDAMKQDVS-AVDLQRYNGENFPESFVKAKFFVIKSYSEDDVHNCIKYGA 266

Query:   410 WASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQ 469
             W+STP GNKKL+AAY EA++ S+ CPV+LLFSVN SGQFVGLAEM GPVDFNK +EYWQQ
Sbjct:   267 WSSTPTGNKKLNAAYYEAKENSQECPVYLLFSVNASGQFVGLAEMVGPVDFNKTMEYWQQ 326

Query:   470 DKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHP 529
             DKW GCFPVKWHI+KD+PNSLL+HITL NNENKPVTNSRDTQE+ LE G K+IKIFK++ 
Sbjct:   327 DKWIGCFPVKWHIIKDIPNSLLRHITLANNENKPVTNSRDTQEVNLEHGTKIIKIFKEYM 386

Query:   530 SKTCILDDFGFYETRQKTI 548
             SKTCILDD+ FYETRQK I
Sbjct:   387 SKTCILDDYKFYETRQKII 405

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0019722 "calcium-mediated signaling" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

TAIR|locus:2089280 ECT5 "AT3G13060" [Arabidopsis thaliana (taxid:3702)]

 Score = 772 (276.8 bits), Expect = 2.4e-89, Sum P(2) = 2.4e-89
 Identities = 164/318 (51%), Positives = 208/318 (65%)

Query:   246 PRPMSGMGAAQGFMNMNRMYPNKLYGQYG---NTFRSGV------GFGSN-GYDLRTN-- 293
             P+P+   G+    + M        YG +G   N++  G       G GSN G  L +N  
Sbjct:   254 PQPLGSYGSYGQNIPMGSQRQRSFYG-FGSGSNSYNRGYMHSGGRGQGSNYGSRLISNVG 312

Query:   294 --GRGWLSVDG-KYKSXXXXXXXXXXXXENMDGLNELNRGPRAKGAKNQKGSAPNALPVK 350
                +GW+ VD  + +                D LNE NRGPRA   K Q         V 
Sbjct:   313 MGNQGWIGVDNSRGRGRVSDPSLGGAYNGTFDILNEQNRGPRASKPKTQ---------VL 363

Query:   351 EQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVW 410
             E+  L +     +N+K S + + +E N ADF  +YT+AK F+IKSYSED+VHKSIKY+VW
Sbjct:   364 EE--LDSAADSKKNNKGS-AKEHEESNNADFVTDYTNAKLFIIKSYSEDNVHKSIKYNVW 420

Query:   411 ASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQD 470
             ASTPNGNKKLDAAY+EA+ +   CP+FLLFSVN S QF G+AEM GPVDF K+V+YWQQD
Sbjct:   421 ASTPNGNKKLDAAYREAKDEKEPCPLFLLFSVNASSQFCGVAEMVGPVDFEKSVDYWQQD 480

Query:   471 KWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPS 530
             KW+G FPVKWHI+KDVPNS  +HI LENN+NKPVTNSRDTQE+KLEQG++++KIFK++ +
Sbjct:   481 KWSGQFPVKWHIIKDVPNSQFRHIILENNDNKPVTNSRDTQEVKLEQGIEMLKIFKNYDA 540

Query:   531 KTCILDDFGFYETRQKTI 548
              T ILDDFGFYE R+K I
Sbjct:   541 DTSILDDFGFYEEREKII 558

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2023807 ECT7 "AT1G48110" [Arabidopsis thaliana (taxid:3702)]

 Score = 687 (246.9 bits), Expect = 8.8e-74, Sum P(3) = 8.8e-74
 Identities = 134/231 (58%), Positives = 173/231 (74%)

Query:   322 DGLNELNRGPRAKGAKNQKGSAPNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADF 381
             D + E NRG R++   NQ       L VK       G A+ E + I ++P   +YNK D 
Sbjct:   266 DTVREQNRGRRSRALGNQ-------LIVKAYTTKA-GNADAEGN-IVINPS--QYNKEDL 314

Query:   382 PEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQ----QKSRSCPVF 437
               +Y++AKFFVIKSYSEDDVHKSIKY+VW+ST +GNKKL +AY++AQ    +KS  CP+F
Sbjct:   315 RIDYSNAKFFVIKSYSEDDVHKSIKYNVWSSTLHGNKKLQSAYEDAQRIATEKSCECPIF 374

Query:   438 LLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLE 497
             L FSVN SG F G+AEM GPV F+K++++WQQDKW+G FPVKWHI+KDVPNS  +HI L+
Sbjct:   375 LFFSVNASGLFCGMAEMTGPVSFDKDMDFWQQDKWSGSFPVKWHIIKDVPNSYFRHIILQ 434

Query:   498 NNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKTI 548
             NNENKPVTNSRDTQEI L+QGL+++KIFKDH  +T +LDDF +YE+RQ+ +
Sbjct:   435 NNENKPVTNSRDTQEIMLKQGLEVLKIFKDHMERTSLLDDFVYYESRQRVM 485

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2088995 ECT6 "AT3G17330" [Arabidopsis thaliana (taxid:3702)]

 Score = 701 (251.8 bits), Expect = 6.0e-72, Sum P(2) = 6.0e-72
 Identities = 136/226 (60%), Positives = 171/226 (75%)

Query:   325 NELNRGPRAKGAKNQKGSAPNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEE 384
             +E NRG R + ++NQ       L VK       G A+ E + I ++PDR  YNK DF  E
Sbjct:   218 SEQNRGSRTRRSRNQ-------LIVKAYTTKA-GNADAEGN-IVINPDR--YNKEDFSIE 266

Query:   385 YTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQ----QKSRSCPVFLLF 440
             Y+DA+FFVIKSYSEDDVHKSIKY VW+ST NGNKKL + Y++AQ    +KSR CP+FL F
Sbjct:   267 YSDARFFVIKSYSEDDVHKSIKYGVWSSTLNGNKKLQSVYEDAQRIATEKSRECPIFLFF 326

Query:   441 SVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNE 500
             SVN+SG F G+AEM GPV F++++++WQQDKW+G FPVKWHI+KDVPNS  +HI L NNE
Sbjct:   327 SVNSSGLFCGVAEMTGPVSFDRDMDFWQQDKWSGSFPVKWHIIKDVPNSYFRHIILHNNE 386

Query:   501 NKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 546
             NKPVTNSRDTQEI L+QGL+++K+FK H  KT +LDDF +YE RQ+
Sbjct:   387 NKPVTNSRDTQEIILKQGLEVLKLFKHHAEKTSLLDDFMYYEDRQR 432

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

TAIR|locus:2207405 ECT8 "AT1G79270" [Arabidopsis thaliana (taxid:3702)]

 Score = 682 (245.1 bits), Expect = 2.0e-71, Sum P(2) = 2.0e-71
 Identities = 136/237 (57%), Positives = 172/237 (72%)

Query:   327 LNRGP--RAKGAKNQKGSAPNALPVKEQNVLTNGTAE------DENDK---ISLSPDRDE 375
             LNR    +AK    + G++ N L    Q+ +TNG  E      + N++   +     RD+
Sbjct:   250 LNRDETEKAKARTKENGTSMNDL-ANGQDHITNGECESCSLDAEGNERSNGVGSVIRRDQ 308

Query:   376 YNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQK----S 431
             YN   F  +Y +A FFVIKSYSEDD+HKSIKY+VW+ST NGNKKLD+AYQE+Q+K    S
Sbjct:   309 YNLPSFQTKYEEAIFFVIKSYSEDDIHKSIKYNVWSSTLNGNKKLDSAYQESQKKAADKS 368

Query:   432 RSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLL 491
               CPVFL FSVN SGQF G+AEM G VD+ K++E+WQQDKWTG FPVKWHI+KDVPN  L
Sbjct:   369 GKCPVFLFFSVNASGQFCGVAEMIGRVDYEKSMEFWQQDKWTGYFPVKWHIIKDVPNPQL 428

Query:   492 KHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKTI 548
             +HI LENNENKPVTNSRDTQE++L QG +++ IFK++ +KT ILDDF FYE R+K +
Sbjct:   429 RHIILENNENKPVTNSRDTQEVRLPQGNEVLNIFKNYAAKTSILDDFDFYENREKVM 485

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

TAIR|locus:2161213 ECT10 "evolutionarily conserved C-terminal region 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 648 (233.2 bits), Expect = 5.3e-69, Sum P(2) = 5.3e-69
 Identities = 117/215 (54%), Positives = 159/215 (73%)

Query:   328 NRGPRAKGAKNQKGSAPNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTD 387
             NRGPRA      K S+    P       T G  +  +D  +  P+   YN  +F  +Y +
Sbjct:   275 NRGPRASSRVKSKNSSK---PCS-----TIG--DSASDSSTAGPNPSLYNHPEFVTDYKN 324

Query:   388 AKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQ 447
             AKFF++KS+SED+VH+SIKY+VWASTP+GNKKLD AY++A++    CP+FL FSVN SGQ
Sbjct:   325 AKFFIVKSFSEDNVHRSIKYNVWASTPHGNKKLDTAYRDAEKMGGKCPIFLFFSVNASGQ 384

Query:   448 FVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNS 507
             F G++EM GPVDF K+  YWQQD+W+G FPVKWHIVKD+PN+   HI L+NN+NKPVT+S
Sbjct:   385 FCGVSEMVGPVDFEKDAGYWQQDRWSGQFPVKWHIVKDIPNNRFCHILLQNNDNKPVTHS 444

Query:   508 RDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYE 542
             RD+QE+KL QG+++++IFK++ + T ILDDFG+Y+
Sbjct:   445 RDSQEVKLRQGIEMLRIFKEYEAHTSILDDFGYYD 479

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2010494 ECT9 "AT1G27960" [Arabidopsis thaliana (taxid:3702)]

 Score = 634 (228.2 bits), Expect = 6.8e-65, Sum P(2) = 6.8e-65
 Identities = 118/181 (65%), Positives = 147/181 (81%)

Query:   369 LSPDR-DEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEA 427
             +S DR D + + +   ++ DAKFFVIKSYSED+VHKSIK+ VWAST NGNKKLDAAY+EA
Sbjct:   310 ISYDRVDRFCQQELLSQFRDAKFFVIKSYSEDNVHKSIKHCVWASTKNGNKKLDAAYREA 369

Query:   428 QQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVP 487
             ++K  +CPVFLLFSVN S QF G+AEM GPVDFN +VEYWQQD+W+G FPV+W IVKDVP
Sbjct:   370 KKKDVACPVFLLFSVNASSQFCGVAEMVGPVDFNTSVEYWQQDRWSGHFPVQWLIVKDVP 429

Query:   488 NSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKT 547
             NSL +HI +E+N+NKPVTNSRDTQE+ LE+G++++ IF     ++ ILDDF FYE RQ  
Sbjct:   430 NSLFRHIIIESNDNKPVTNSRDTQEVGLEKGIEMLDIFISCEMRSSILDDFNFYEERQIA 489

Query:   548 I 548
             I
Sbjct:   490 I 490

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016571 "histone methylation" evidence=RCA

TAIR|locus:2024286 ECT11 "AT1G09810" [Arabidopsis thaliana (taxid:3702)]

 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 128/231 (55%), Positives = 169/231 (73%)

Query:   322 DGLNELNRGPRAKGAKNQKGSAPNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADF 381
             D L EL  GPRA  AK +  S  +  P+K+            N+  +L+  R+ YN  DF
Sbjct:   180 DYLVELKCGPRAN-AKTRPPSESS--PLKQ------------NNSFALALRREMYNLPDF 224

Query:   382 PEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKS----RSCPVF 437
               +Y DAKFFVIKSYSEDDVHKSIKYSVW+ST NGNKKLDAA+++A+ K+    +  P+F
Sbjct:   225 QTDYEDAKFFVIKSYSEDDVHKSIKYSVWSSTINGNKKLDAAFRDAETKTLEDGKKRPIF 284

Query:   438 LLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLE 497
             L FSVN S QFVGLAEM G VDFNK++++WQ DKW+G FPV+WH+VKD+PN  L+HI L+
Sbjct:   285 LFFSVNASRQFVGLAEMVGYVDFNKDLDFWQVDKWSGFFPVEWHVVKDIPNWELRHIILD 344

Query:   498 NNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKTI 548
             NNE+KPVT++RDT EIKL++GL+++ IFK + + T +LDD  FYE R+K++
Sbjct:   345 NNEDKPVTHTRDTHEIKLKEGLQMLSIFKKYSAVTFLLDDMDFYEEREKSL 395

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	642
pfam04146	135	pfam04146, YTH, YT521-B-like domain	2e-68

>gnl|CDD|217926 pfam04146, YTH, YT521-B-like domain

 Score =  218 bits (559), Expect = 2e-68
 Identities = 76/141 (53%), Positives = 99/141 (70%), Gaps = 8/141 (5%)

Query: 389 KFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQF 448
           +FF+IKSY+ED+VH SIKY VWAST + NKKL+ A++EA+      PV+L+FSVN SG+F
Sbjct: 1   RFFIIKSYNEDNVHLSIKYGVWASTSHNNKKLNKAFKEAE------PVYLIFSVNKSGKF 54

Query: 449 VGLAEMAGPVDFNK--NVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTN 506
            G A M  P+DF+   N +     KW G F V+W  VKD+P   L+H+   NNENKPVT 
Sbjct: 55  CGYARMTSPIDFDSTANSQDSSSQKWGGPFKVEWLSVKDLPFHRLRHLKNPNNENKPVTI 114

Query: 507 SRDTQEIKLEQGLKLIKIFKD 527
           SRD QEI+ E G +L+KIFK+
Sbjct: 115 SRDGQEIEPEIGEELLKIFKN 135

A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells. It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68-kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner. The YTH domain has been identified as part of the PUA superfamily. Length = 135

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	642
KOG1901	487	consensus Uncharacterized high-glucose-regulated p	100.0
PF04146	140	YTH: YT521-B-like domain; InterPro: IPR007275 A pr	100.0
KOG1902	441	consensus Putative signal transduction protein inv	100.0
PRK00809	144	hypothetical protein; Provisional	94.11
PF01878	143	EVE: EVE domain; InterPro: IPR002740 The EVE domai	80.98

>KOG1901 consensus Uncharacterized high-glucose-regulated protein [General function prediction only]

Probab=100.00  E-value=3.6e-83  Score=685.64  Aligned_cols=459  Identities=44%  Similarity=0.670  Sum_probs=327.5

Q ss_pred             CCCCCCccccccccCCCCCCcccccCCCcccc-ccCCCC--CCCCCCCCCCCCCCcCCCCCccccCCCCCCC-CCCCCCC
Q 006520           25 NVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMY-HHGYGY--APYPPYSPATSPVPTMGTDGQLYGPQHYQYP-HYFQPIT  100 (642)
Q Consensus        25 ~~~~w~~y~~Yvn~dg~e~~~gvy~dn~Sl~y-~~Gygy--~pYg~Ysp~~sP~p~~g~DgQlyg~q~y~yp-~yyq~~~  100 (642)
                      .+.+ ++|+-|.|.|++.+. ++.+.+.+++. ...+++  .||.|+++   .++++|.|++++.+|++++. ++|-+.+
T Consensus         3 ~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~s   77 (487)
T KOG1901|consen    3 SGLY-TDYGVVSNSESVQPD-GGQGQESANTSYPTSLGYHSFPYNPSSY---AASSLGSDGSLGEPQQNPLYSPSYGPVS   77 (487)
T ss_pred             CCCc-CCccccccCcccccC-CccCCCcccccCCccccccCCCCCCCcc---cccCCCCCccccccccccccCCCcCccc
Confidence            4556 899999999994444 44444454444 333343  23444433   34588999999999999997 5554222


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCccCCCCCCccccCCCCCCCcccCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006520          101 PTSSPYSPSPVAPTPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNNTYGRGSLPGRGPA  180 (642)
Q Consensus       101 ~~~~~y~~s~~~~~q~e~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~~~~~~~~~~p~~~~~~~~gsyg~g~~~~~~p~  180 (642)
                         .|+........++++....+..   ...+..+.            +.  +.+..|...   ..+.++ ..-+.+.|.
T Consensus        78 ---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~------------~~--~~~~~p~~~---~~~~~~-~~~~~~~~~  133 (487)
T KOG1901|consen   78 ---LPTASTSGSSTFSNLTLRKAPG---FSSSGPKQ------------GG--SMPSDPRGS---AQRNSS-ISASPGYPP  133 (487)
T ss_pred             ---CccccccCcccccchhhhcccc---cccccccc------------Cc--CCCCCCccc---cccccc-ccCCCCCCC
Confidence               2233333333344443322221   01111111            10  122222222   111121 122233445


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCcccccccccCCcccCCCCCCCCCCCCcCCCCCCCCCCCC-CCCCCC
Q 006520          181 SGYQDPRCNLDGMRSPIPWLDGPVISDARPVASNTFNSSISNVNNVASSRNQNYRPNSHYMGLHHPRPMSGMG-AAQGFM  259 (642)
Q Consensus       181 ~gy~~~~~~~dg~~~~~~~~d~~~~s~~~~~~~~~~s~s~~~~~~~~~~~nq~~~~~~~~~~~~~~~~~~~~~-~~~~~~  259 (642)
                      .+|.+|++..+.....                                 +..++..+.+++.+....+.+.++ ...+|+
T Consensus       134 ~~~~~P~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  180 (487)
T KOG1901|consen  134 LPYSAPKFASDLIPGK---------------------------------PPPPISGNTGPPTPDSKGPVSSSGHNAQGYY  180 (487)
T ss_pred             cccCCCccccccccCC---------------------------------CCCCccccCCCCCcccCCcccCCcccccccc
Confidence            5777777666641100                                 112222223333333333333332 345665


Q ss_pred             ccCccCC-CcccCcCCCccccCCCCCCCCCCCCCCCccccccCCccccCCCCCCccCCCCC-CccccccccCCCCCCCCC
Q 006520          260 NMNRMYP-NKLYGQYGNTFRSGVGFGSNGYDLRTNGRGWLSVDGKYKSRGRGNGYFGYGNE-NMDGLNELNRGPRAKGAK  337 (642)
Q Consensus       260 ~~~~~y~-~~~y~~~g~~~~~~~~~~~~~~~~~~~~r~w~~~~~k~~~~~~~~~~~~~~~~-~~~~~~e~nrgpr~~~~~  337 (642)
                        ++++. .+.|+.+..+...+..|+...+.....+|+|..+++..+..+.. ......++ ..+.++|+|||||+...+
T Consensus       181 --~~~~~~~~~~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~nrg~~s~~~~  257 (487)
T KOG1901|consen  181 --DQFSSQPGLYGSYQPTGGSGPPYGQSLYANQPKGRSPYGVDNSRPTWGIN-YPRLPSDEAGSDSLNEQNRGPRSSDSR  257 (487)
T ss_pred             --cccccCcccccCccccCCCCCccCcccccccccCCCCcccCCCccccccc-CCCccccccccccccccccCccccccc
Confidence              45555 34565555555557889999999889999999999755544422 22223332 378899999999999999


Q ss_pred             CCCCCCCCcccccccccccCCCCcccCCcccCCCCcccCCCCCCCCCCCCceEEEEecCChhHHHHHhhcCeeecCCchH
Q 006520          338 NQKGSAPNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGN  417 (642)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qyN~~df~~~y~~aRFFIIKS~nedNIhkSIKygVWaTTp~nn  417 (642)
                      ++.........+...+.         .+...+++++++||+++|.+.+.+||||||||++|||||+||||+|||+|+++|
T Consensus       258 ~~~~~~~~~~~~~~~s~---------~~~~~~~~~~~~yn~~~f~~~~~nAkfFVIKSySEDdVHkSIKY~vWsST~~GN  328 (487)
T KOG1901|consen  258 GQDINSSGPTEAGSASA---------PESNESVKRRDRYNPPDFLTDYSNAKFFVIKSYSEDDVHKSIKYNVWSSTLNGN  328 (487)
T ss_pred             CccccCCcchhcccccc---------ccccccccChhhcCccccccccccceEEEEeccChhhhhhhcccceeecccCCc
Confidence            88754443333322111         111256899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCEEEEEEeCCCCCeeEEEEecCCCCCCCCchhhccccCcCccceeEEEeecCCCccccccccC
Q 006520          418 KKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLE  497 (642)
Q Consensus       418 kKLn~AF~ea~~k~~~~pVfLfFSVN~SG~FqG~AeM~SpVDf~ks~~~WqqdKw~G~F~VeWi~vkDVPf~~lrHI~N~  497 (642)
                      ||||+||++++.+..+||||||||||+||||||+|||++||||+++++|||||||.|.|+||||+||||||..||||+++
T Consensus       329 KkLdaAYreak~~~~~cPvfLfFSVNaSGqFCGvAEMvgPVdfn~~~~~WqQDKW~G~FpVKWhiVKDVPNs~lrHI~Le  408 (487)
T KOG1901|consen  329 KKLDAAYREAKKKSGKCPVFLFFSVNASGQFCGVAEMVGPVDFNKDMEYWQQDKWSGSFPVKWHIVKDVPNSQLRHIILE  408 (487)
T ss_pred             hhhHHHHHHhhhccCCCCceEEEEEcCCccccceeeeccceecccccchhhhcccceecceeeEEEeeCCccceeEEEee
Confidence            99999999999889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeecCCCcccchHHHHHHHHHHhcCCCCcccccchhhhHHHHHHHHHHHHHhhh
Q 006520          498 NNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKTIQEKKAKQQQ  557 (642)
Q Consensus       498 ~NENKPVt~SRDgQEIe~e~G~qLLkIF~~~~~~tSIlDDF~~Ye~rek~~~e~r~~~~~  557 (642)
                      +|||||||++||+|||.+++|++||+||+++.++|||||||.|||.||+.|+++|+|+..
T Consensus       409 NNeNKPVTnSRDTQEV~leqGievlkIfk~y~~~TSiLDDf~~Ye~rq~~~~~~k~r~~~  468 (487)
T KOG1901|consen  409 NNENKPVTNSRDTQEVPLEQGIEVLKIFKSYAAKTSILDDFGFYEERQKIIQDKKARQPP  468 (487)
T ss_pred             cCCCCCcccccccceecHHHHHHHHHHHHhhcceeeecccccchHHHHHHhhhcccccCc
Confidence            999999999999999999999999999999999999999999999999999999998864

>PF04146 YTH: YT521-B-like domain; InterPro: IPR007275 A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells []

Probab=100.00  E-value=1.2e-48  Score=362.17  Aligned_cols=136  Identities=50%  Similarity=0.896  Sum_probs=114.2

Q ss_pred             CceEEEEecCChhHHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeCCCCCeeEEEEecCCCCCCCCchh
Q 006520          387 DAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEY  466 (642)
Q Consensus       387 ~aRFFIIKS~nedNIhkSIKygVWaTTp~nnkKLn~AF~ea~~k~~~~pVfLfFSVN~SG~FqG~AeM~SpVDf~ks~~~  466 (642)
                      ++|||||||+|++|||+|+++|||+|+++++++|++||++++      +||||||||+||+|||||+|+|+++++....+
T Consensus         1 ~~rfFiiKS~~~~ni~~s~~~gvW~t~~~~~~~L~~Af~~~~------~V~L~FSvn~S~~F~G~A~M~s~~~~~~~~~~   74 (140)
T PF04146_consen    1 NARFFIIKSFNEENIHLSIKYGVWATQPKNEKKLNEAFKESR------NVYLFFSVNGSGHFQGYARMTSPIDPDSPKPF   74 (140)
T ss_dssp             --EEEEEEESSCHHHHHHHHCTEEE--CCCHHHHHHHHHHSS-------EEEEEEETTTSEEEEEEEEECECCSSS----
T ss_pred             CcEEEEEEECCHHHHHHHHhCCEEcccccchHHHHHHHHhCC------CEEEEEeecCcceEEEEEEEccCCCCcccCcc
Confidence            579999999999999999999999999999999999999983      89999999999999999999999999998999


Q ss_pred             hc----cccCcCccceeEEEeecCCCccccccccCCCCCCceeecCCCcccchHHHHHHHHHHhcC
Q 006520          467 WQ----QDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDH  528 (642)
Q Consensus       467 Wq----qdKw~G~F~VeWi~vkDVPf~~lrHI~N~~NENKPVt~SRDgQEIe~e~G~qLLkIF~~~  528 (642)
                      |.    ..+|+|.|+|+||++++|||+.++||+|++||||||+++||||||++++|++||+||+++
T Consensus        75 w~~~~~~~~~~g~F~v~Wl~~~~lpf~~~~hl~n~~n~~~pV~~~rDgqEi~~~~G~~l~~~f~~~  140 (140)
T PF04146_consen   75 WQQDSSSSKWGGPFRVEWLRVKDLPFSKLRHLRNPLNENKPVKISRDGQEIEPEIGEQLLKIFDNQ  140 (140)
T ss_dssp             --SS-SGCGG-SEEEEEEEE-S-EEHHHHTT-EETTTTTEETTS--TTEEE-CCHHHHHHHHCGT-
T ss_pred             ccccccccccCCceEEEEEECCcCChHHhcccccccCCCcEEEECCCCEEeCHHHHHHHHHHHhhC
Confidence            95    469999999999999999999999999999999999999999999999999999999863

It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanaisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B, Q9QY02 from SWISSPROT, is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner []. The domain is predicted to have four alpha helices and six beta strands []. In plant cells environmental stimuli, which light, pathogens, hormones, and abiotic stresses, elicit changes in the cytosolic Ca levels but little is known of the cytosolic-nuclear Ca-signaling pathway; where gene regulation occurs to respond appropriately to the stress. It has been demonstrated that two novel Arabidopsis thaliana (Mouse-ear cress) proteins, (ECT1 and ECT2), specifically associated with Calcineurin B-Like-Interacting Protein Kinase1 (CIPK1), a member of Ser/Thr protein kinases that interact with the calcineurin B-like Ca-binding proteins. These two proteins contain a very similar C-terminal region (180 amino acids in length, 81% similarity), which is required and sufficient for both interaction with CIPK1 and translocation to the nucleus. This domain, the YTH-domain, is conserved across all eukaryotes and suggests that the conserved C-terminal region plays a critical role in relaying the cytosolic Ca-signals to the nucleus, thereby regulating gene expression [].; PDB: 2YUD_A 2YU6_A.

>KOG1902 consensus Putative signal transduction protein involved in RNA splicing [Signal transduction mechanisms; RNA processing and modification]

Probab=100.00  E-value=2.2e-41  Score=349.15  Aligned_cols=149  Identities=36%  Similarity=0.615  Sum_probs=138.3

Q ss_pred             ccCCCCCCCCCCCCceEEEEecCChhHHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeCCCCCeeEEEE
Q 006520          374 DEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAE  453 (642)
Q Consensus       374 ~qyN~~df~~~y~~aRFFIIKS~nedNIhkSIKygVWaTTp~nnkKLn~AF~ea~~k~~~~pVfLfFSVN~SG~FqG~Ae  453 (642)
                      +++++...+.  ..+|||||||.|.+||.+|++.|||+||+.|++||+.||+++      ..||||||||.||||||||+
T Consensus        60 ~~~~~ss~~~--~~~rYFIiKS~N~eN~elSvqkGiWaTq~sNE~kLn~AF~~s------~~ViLIFSVn~SghFQG~Ar  131 (441)
T KOG1902|consen   60 DQTSKLKYVL--QDARYFIIKSNNHENVELSVQKGVWSTQPSNEKKLNLAFRSS------RSVILIFSVNESGHFQGFAR  131 (441)
T ss_pred             hhcccccccC--CceEEEEEecCCccceeeehhcceeccccccHHHHHHHHhhc------CcEEEEEEecccccchhhhh
Confidence            5666655444  678999999999999999999999999999999999999998      48999999999999999999


Q ss_pred             ecCCCCCCCCchhhcc-----ccCcCccceeEEEeecCCCccccccccCCCCCCceeecCCCcccchHHHHHHHHHHhcC
Q 006520          454 MAGPVDFNKNVEYWQQ-----DKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDH  528 (642)
Q Consensus       454 M~SpVDf~ks~~~Wqq-----dKw~G~F~VeWi~vkDVPf~~lrHI~N~~NENKPVt~SRDgQEIe~e~G~qLLkIF~~~  528 (642)
                      |+|+|-..++-..|.+     ..|++.|+||||++++|||.++.||+|+|||||||++|||||||++++|+|||.|+...
T Consensus       132 MsS~IG~~~~q~~W~~~~G~~a~~G~~FkVkWiRl~eLpFqkt~hL~NP~NdnkpVKISRD~QELep~VGEqL~~Ll~~~  211 (441)
T KOG1902|consen  132 MSSEIGHGGSQIHWVLPAGMSAMLGGVFKVKWIRLRELPFQKTAHLTNPWNENKPVKISRDGQELEPEVGEQLCLLLPPD  211 (441)
T ss_pred             hcchhccCCCCccccccCCcccccCceeeEeEEeeccccchhhhhcCCcccccCceeecccccccChhHHHHHHHhcCCC
Confidence            9999998888877865     67999999999999999999999999999999999999999999999999999999876


Q ss_pred             CC
Q 006520          529 PS  530 (642)
Q Consensus       529 ~~  530 (642)
                      ++
T Consensus       212 p~  213 (441)
T KOG1902|consen  212 PS  213 (441)
T ss_pred             cc
Confidence            64

>PRK00809 hypothetical protein; Provisional

Probab=94.11  E-value=0.21  Score=47.83  Aligned_cols=122  Identities=10%  Similarity=0.155  Sum_probs=74.3

Q ss_pred             eEEEEecCChhHHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeC------CCCCeeEEEEecCCCCCCC
Q 006520          389 KFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN------TSGQFVGLAEMAGPVDFNK  462 (642)
Q Consensus       389 RFFIIKS~nedNIhkSIKygVWaTTp~nnkKLn~AF~ea~~k~~~~pVfLfFSVN------~SG~FqG~AeM~SpVDf~k  462 (642)
                      +|+|+=+ |+||+......|||-.....-.-|.+    .    .....+||++-+      .-..|.|+|++++..-.+.
T Consensus         2 ~yWi~~~-~~~~~~~~~~~gv~g~~~~~rn~lr~----M----k~GD~v~fYhs~~~~~~~~~~~ivgi~eV~~~~y~D~   72 (144)
T PRK00809          2 TYWLCIT-NEDNWEVIKDKNVWGVPERYKNTIEK----V----KPGDKLIIYVSQEYGAERLPGKIVGIYEVVSEWYEDS   72 (144)
T ss_pred             ceEEEec-CHHHHHHHHhCCEeecchhhhhHHhh----C----CCCCEEEEEECCccCCCCCCceEEEEEEEecCcccCC
Confidence            6777766 99999999999999996542222221    1    134788888887      5789999999998652222


Q ss_pred             Cchhhc------cccCcCccceeEEEeec--CCCcccc-cc---ccCCCCCCce-eecCCCcccchHHHHHHH
Q 006520          463 NVEYWQ------QDKWTGCFPVKWHIVKD--VPNSLLK-HI---TLENNENKPV-TNSRDTQEIKLEQGLKLI  522 (642)
Q Consensus       463 s~~~Wq------qdKw~G~F~VeWi~vkD--VPf~~lr-HI---~N~~NENKPV-t~SRDgQEIe~e~G~qLL  522 (642)
                      + .+|.      .+.+--..+|+++.+.+  ||...|. +|   ++.-.=...+ ..+|  .||..+.-..|+
T Consensus        73 t-~~~p~~~~~~~~~~p~rvdV~~~~~~~~~v~l~~L~~~L~fik~~~~w~~~l~R~~~--~~I~~~d~~~I~  142 (144)
T PRK00809         73 T-PIFPAEPVRPKEIYPYRVKLKPVKIFEEPIDFKPLIPKLKFIENKKQWSGHLRNRAM--RPIPEEDYKLIE  142 (144)
T ss_pred             c-cCCCccccCCCCCceEEEEEEEeeecCCcccHHHHHhhhhhhhcccccchhhhcCCC--ccCCHHHHHHHh
Confidence            2 2332      12222467899998877  7766551 11   2111101122 4555  777766665544

>PF01878 EVE: EVE domain; InterPro: IPR002740 The EVE domain is part of the wider PUA domain superfamily

Probab=80.98  E-value=3.8  Score=38.14  Aligned_cols=128  Identities=14%  Similarity=0.209  Sum_probs=62.5

Q ss_pred             eEEEEecC----ChhHHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeC-CCCCeeEEEEecCCCCCC--
Q 006520          389 KFFVIKSY----SEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN-TSGQFVGLAEMAGPVDFN--  461 (642)
Q Consensus       389 RFFIIKS~----nedNIhkSIKygVWaTTp~nnkKLn~AF~ea~~k~~~~pVfLfFSVN-~SG~FqG~AeM~SpVDf~--  461 (642)
                      +|+|+|+.    +-+++ .-.+..+|.-..+...+-  .+++.+    ...-+||+.-+ +.+.|.|+|+.++..-.+  
T Consensus         1 ~YWl~~~~P~~~~~~~~-~~~~~~~~~gv~~~~~~~--~l~~mk----~GD~vifY~s~~~~~~ivai~~V~~~~~~d~~   73 (143)
T PF01878_consen    1 RYWLLKANPENFSIDDL-EHWGVTVWDGVRNYQARK--NLKRMK----PGDKVIFYHSGCKERGIVAIGEVVSEPYPDPT   73 (143)
T ss_dssp             -EEEEEEBTTTSHHHHH-HHHSEEECHTEEEHHHHH--HHHC------TT-EEEEEETSSSS-EEEEEEEEEEEEEE-GG
T ss_pred             CEEEEEeCCcccCHHHh-cccceEEEcCEeehhhhh--hhhcCC----CCCEEEEEEcCCCCCEEEEEEEEeccccCCCc
Confidence            68999998    76666 444445555333322221  444442    34677778777 689999999999864221  


Q ss_pred             ---CCchhhcccc--CcCccceeEEEeec--CCCccccccccCCCCCCceeec-CCCcccchHHHHHHHHH
Q 006520          462 ---KNVEYWQQDK--WTGCFPVKWHIVKD--VPNSLLKHITLENNENKPVTNS-RDTQEIKLEQGLKLIKI  524 (642)
Q Consensus       462 ---ks~~~WqqdK--w~G~F~VeWi~vkD--VPf~~lrHI~N~~NENKPVt~S-RDgQEIe~e~G~qLLkI  524 (642)
                         ....++....  .....+|+++.+-+  |+...||.. ..+.+-.-++.. .--.+|..+.-..|+++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~pi~l~~Lk~~-~~l~~l~~i~~~r~s~~~it~~~~~~I~~~  143 (143)
T PF01878_consen   74 AFDPDSPYYDPKSNPKPYRVDVEYVKIFEKPIPLKELKAE-PELENLSFIRNKRLSVFPITEEDFEAIMEM  143 (143)
T ss_dssp             GTSTTSTTBTTTSCSSSEEEEEEEEEEEEEEEEHHHHHC--GGGTTSHHHHTTT-SEEEE-HHHHHHHHHH
T ss_pred             cccccccCcCCccCCCeeEEEEEEEEecCCCcCHHHHhcC-CccccChhhhcCCcCeEEECHHHHHHHHhC
Confidence               1112111111  22356788886544  444555432 111111122222 23356666666666553

The function of this domain is not known but, given the structural similarities to PUA, is likely to involve RNA binding []. ; PDB: 2G2X_B 2AR1_A 3EOP_A 2EVE_A 2HD9_A 2ZBN_A 1WMM_A 2P5D_A 2GBS_A 1ZCE_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	642
2yud_A	180	Solution Structure Of The Yth Domain In Yth Domain-		6e-15
2yu6_A	141	Solution Structure Of The Yth Domain In Yth Domain-		5e-12

>pdb|2YUD|A Chain A, Solution Structure Of The Yth Domain In Yth Domain- Containing Protein 1 (Putative Splicing Factor Yt521) Length = 180

Iteration: 1
 Score = 79.3 bits (194), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 12/145 (8%)
Query: 387 DAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSG 446
           DA+FF+IKS + ++V  +    VW++ P   KKL+ A++ A+       V L+FSV  SG
Sbjct: 25  DARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARS------VILIFSVRESG 78
Query: 447 QFVGLAEMAGPVDFNKNVEYW------QQDKWTGCFPVKWHIVKDVPNSLLKHITLENNE 500
           +F G A ++       +  +W            G F + W   +++P +   H+T   NE
Sbjct: 79  KFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNE 138
Query: 501 NKPVTNSRDTQEIKLEQGLKLIKIF 525
           +KPV   RD QEI+LE G +L  +F
Sbjct: 139 HKPVKIGRDGQEIELECGTQLCLLF 163

>pdb|2YU6|A Chain A, Solution Structure Of The Yth Domain In Yth Domain- Containing Protein 2 Length = 141

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 77/138 (55%), Gaps = 7/138 (5%)
Query: 389 KFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQF 448
           ++F++KS +  ++  S +  +W++TP+  +KL+ A+ E      S  V+L+FSV  SG F
Sbjct: 9   RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWE------SSIVYLVFSVQGSGHF 62
Query: 449 VGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSR 508
            G + M+  +   K+ + W      G F V+W   + +P     H+    N+NK V  SR
Sbjct: 63  QGFSRMSSEIGREKSQD-WGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISR 121
Query: 509 DTQEIKLEQGLKLIKIFK 526
           D QE++ + G +L+++++
Sbjct: 122 DGQELEPQVGEQLLQLWE 139

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	642
2yu6_A	141	YTH domain-containing protein 2; structural genomi	2e-62
2yud_A	180	YTH domain-containing protein 1; structure genomic	3e-61
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	3e-06
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	1e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	7e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	2e-04

>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 141

 Score =  202 bits (515), Expect = 2e-62
 Identities = 40/143 (27%), Positives = 77/143 (53%), Gaps = 7/143 (4%)

Query: 384 EYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN 443
             +  ++F++KS +  ++  S +  +W++TP+  +KL+ A+ E+        V+L+FSV 
Sbjct: 4   GSSGVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESS------IVYLVFSVQ 57

Query: 444 TSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKP 503
            SG F G + M+  +   K+   W      G F V+W   + +P     H+    N+NK 
Sbjct: 58  GSGHFQGFSRMSSEIGREKSQ-DWGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKK 116

Query: 504 VTNSRDTQEIKLEQGLKLIKIFK 526
           V  SRD QE++ + G +L+++++
Sbjct: 117 VQISRDGQELEPQVGEQLLQLWE 139

>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 180

 Score =  201 bits (511), Expect = 3e-61
 Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 14/167 (8%)

Query: 370 SPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQ 429
           +  +D+ +K  +     DA+FF+IKS + ++V  +    VW++ P   KKL+ A++ A+ 
Sbjct: 10  AVRKDQTSKLKYV--LQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSAR- 66

Query: 430 KSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQ------QDKWTGCFPVKWHIV 483
                 V L+FSV  SG+F G A ++       +  +W            G F + W   
Sbjct: 67  -----SVILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICR 121

Query: 484 KDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPS 530
           +++P +   H+T   NE+KPV   RD QEI+LE G +L  +F    S
Sbjct: 122 RELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLFPPDES 168

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.7 bits (154), Expect = 1e-10
 Identities = 43/298 (14%), Positives = 88/298 (29%), Gaps = 72/298 (24%)

Query: 351 EQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIK---- 406
            +++L+     +E D I +S D             T   F+ + S  E+ V K ++    
Sbjct: 42  PKSILSK----EEIDHIIMSKDA---------VSGTLRLFWTLLSKQEEMVQKFVEEVLR 88

Query: 407 ------YSVWASTPNGNKKLDAAYQEAQQK-SRSCPVFLLFSVN---------------T 444
                  S   +       +   Y E + +      VF  ++V+                
Sbjct: 89  INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148

Query: 445 SGQFVGLAEMAGPVDFNKNV---EYWQQDKWTGCFP--VKWHIVK--DVPNSLLKHITLE 497
             + V +  + G     K     +     K        + W  +K  + P ++L+ +   
Sbjct: 149 PAKNVLIDGVLG---SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205

Query: 498 NNENKPVTNSRDTQEIKLEQGL-----KLIKIFKDHPSKTC--ILDD---------FGF- 540
             +  P   SR      ++  +     +L ++ K  P + C  +L +         F   
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265

Query: 541 ----YETRQKTIQEKKAKQQQFQKQVWEGKPAEEKKELANGELKTQKSSEVASDLVEE 594
                 TR K + +  +        +          E+    L  +       DL  E
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK--SLLLKYLDCRPQDLPRE 321

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 56/479 (11%), Positives = 121/479 (25%), Gaps = 164/479 (34%)

Query: 191 DGMRSPIPWLDGPVISDARPVASNTFNSSISNVNNVASSRNQNYRPNSHYMGLHHPRPMS 250
           + +R    +L  P+ ++ R  +  T              R++ Y  N  +   +  R   
Sbjct: 85  EVLRINYKFLMSPIKTEQRQPSMMT--------RMYIEQRDRLYNDNQVFAKYNVSRLQP 136

Query: 251 GMGAAQGFMNMNRMYPNK---LYGQYG-----------NTFRSGVGFGSNGYDLRTNGRG 296
            +   Q  + +    P K   + G  G            +++         +        
Sbjct: 137 YLKLRQALLELR---PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-------- 185

Query: 297 WLSVDGKYKSRGRGNGYFGYGNENMDGLNELNRGPRAKGAKNQKGSAPNALPVKEQNVLT 356
           WL++     S              ++ L +L    +       +    + + ++      
Sbjct: 186 WLNL-KNCNSP----------ETVLEMLQKLLY--QIDPNWTSRSDHSSNIKLR------ 226

Query: 357 NGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSE-----DDVHKSIKYSVWA 411
                    ++                     +    K Y        +        V  
Sbjct: 227 ---IHSIQAELR--------------------RLLKSKPYENCLLVLLN--------VQ- 254

Query: 412 STPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQD- 470
                N K   A+      + SC + LL +          A     +  + +      D 
Sbjct: 255 -----NAKAWNAF------NLSCKI-LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 471 ------KWTGCFPVKWHIVKDVPNSLLK----HITL--ENNENKPVT--NSRDTQEIKLE 516
                 K+  C        +D+P  +L      +++  E+  +   T  N +     KL 
Sbjct: 303 VKSLLLKYLDC------RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

Query: 517 QGLKLIKIFKDHPSKTCILDDFGFYETRQK----TIQEKKAKQQQFQKQV---------- 562
               +I+           L+     E R+     ++         F              
Sbjct: 357 ---TIIESS---------LNVLEPAEYRKMFDRLSV---------FPPSAHIPTILLSLI 395

Query: 563 WEGKPAEEKKELANGELKTQKSSEVASDLVEERTTTVQSNGDLRLSENGSVAKTGDAHK 621
           W      +   + N   K  K S V     +E T ++     + L     +      H+
Sbjct: 396 WFDVIKSDVMVVVN---KLHKYSLVEKQ-PKESTISIP---SIYLELKVKLENEYALHR 447

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 49.7 bits (118), Expect = 3e-06
 Identities = 57/245 (23%), Positives = 80/245 (32%), Gaps = 26/245 (10%)

Query: 1    MDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMYHHGY 60
            +D      P+    +    GG +G  G  D      +     + S  Y    S     GY
Sbjct: 1492 VDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGY 1551

Query: 61   GYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQPITPTSSPYSPSPVAPTPGDIPT 120
            G    P YSP +SP  +         P        + P +P+ SP SPS    +P   PT
Sbjct: 1552 GLTS-PSYSP-SSPGYSTSPAYMPSSPS-------YSPTSPSYSPTSPSYSPTSPSYSPT 1602

Query: 121  SVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNNTYGRGSL------ 174
            S        P  S    S    +      +   +P  P+Y P  ++ +Y   S       
Sbjct: 1603 S--------PSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSPTSPSYSPTS 1652

Query: 175  PGRGPASGYQDPRCNLDGMRSPIPWLDGPVISDARPVASNTFNSSISNVNNVASSRNQNY 234
            P   P S    P        SP      P  S   P  S T + S S  +   S  + +Y
Sbjct: 1653 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPSY 1711

Query: 235  RPNSH 239
             P S 
Sbjct: 1712 SPTSP 1716

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 44.7 bits (105), Expect = 1e-04
 Identities = 41/163 (25%), Positives = 57/163 (34%), Gaps = 12/163 (7%)

Query: 61   GYAP----YPPYSPATSPV-PTMGTDGQLYGPQHYQYPHYFQPITPTSSPYSP-SPV-AP 113
             Y+P    Y P SP+ SP  P+       Y P    Y       +PTS  YSP SP  +P
Sbjct: 1584 SYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1643

Query: 114  T-PGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNNTYGRG 172
            T P   PTS +          T+   +  + +     +  S  + PT   ++  +     
Sbjct: 1644 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSPSYSP 1699

Query: 173  SLPGRGPASGYQDPRCNLDGMRSPIPWLDGPVISDARPVASNT 215
            + P   P S    P        SP      P  S   P  S T
Sbjct: 1700 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1742

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 45.1 bits (106), Expect = 7e-05
 Identities = 49/240 (20%), Positives = 73/240 (30%), Gaps = 14/240 (5%)

Query: 1    MDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVY--GDNGSLMYHH 58
            +D                  G DG V  + + +  V+ D       ++    +       
Sbjct: 1445 IDEESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAM 1504

Query: 59   GYGYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQPITPTSSPYSPSPVAPTPGDI 118
              G+  Y       +  P          P        F P +PT SP SP+    +P   
Sbjct: 1505 AGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYS 1564

Query: 119  PTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNNTYGRGSLPGRG 178
            PTS        P  S    S    +      +   +P  P+Y P  ++ +Y   S P   
Sbjct: 1565 PTS--------PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSPTS-PSYS 1613

Query: 179  PASGYQDPRCNLDGMRSPIPWLDGPVISDARPVASNTFNSSISNVNNVASSRNQNYRPNS 238
            P S    P        SP      P  S   P  S T + S S  +   S  + +Y P S
Sbjct: 1614 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPAYSPTSPSYSPTS 1672

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 44.4 bits (104), Expect = 1e-04
 Identities = 20/148 (13%), Positives = 30/148 (20%), Gaps = 2/148 (1%)

Query: 55  MYHHGYGYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQPITPTSSPYSPSPVAPT 114
           M HH     P        +  P        + P                 P    P    
Sbjct: 1   MSHHKKRVYPQAQLQYGQNATPLQQ--PAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQ 58

Query: 115 PGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNNTYGRGSL 174
              +  +     + +   +T+     + N   V  N    P  P              + 
Sbjct: 59  QQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAA 118

Query: 175 PGRGPASGYQDPRCNLDGMRSPIPWLDG 202
           P  G  S              PI  L  
Sbjct: 119 PAYGQPSAAMGQNMRPMNQLYPIDLLTE 146

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 542 ETRQKTIQEKKAKQQQFQKQVWEGKPAEEKKELANGELKTQKSSEVASDLVEERTTTVQS 601
           E ++K +QE  A  +   +Q W  K A++  E  N     Q      ++ + ++    Q 
Sbjct: 92  EEQRKRLQELDAASKV-MEQEWREK-AKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQP 149

Query: 602 NGDL 605
           + D+
Sbjct: 150 DADI 153

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	642
d2hd9a1	145	Hypothetical protein PH1033 {Pyrococcus horikoshii	96.24

>d2hd9a1 b.122.1.8 (A:1-145) Hypothetical protein PH1033 {Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: Atu2648/PH1033-like
domain: Hypothetical protein PH1033
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.24  E-value=0.016  Score=30.19  Aligned_cols=124  Identities=11%  Similarity=0.165  Sum_probs=75.8

Q ss_pred             EEEEECCCHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCC--------CCEEEEEEECCCCCCC
Q ss_conf             99994189567998762593543876078999999998840599978999986788--------8736889822888899
Q 006520          390 FFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTS--------GQFVGLAEMAGPVDFN  461 (642)
Q Consensus       390 FFIIKS~sedNIhkSIKygVWaTTp~nnkKLd~AFkea~~k~~~~pVfLfFSVN~S--------gqFqGvAeM~SpVDf~  461 (642)
                      |+|+=+ ++||+....+.|+|.......+.|...        ....-+||++....        +.|.|+++.++....+
T Consensus         3 YWi~v~-s~e~~~~~~~~g~~~~~~~k~~~~~ri--------kpGD~li~Y~~~~~~~~~~~~~q~f~ai~~V~~~~~~d   73 (145)
T d2hd9a1           3 YWICIT-NRENWEVIKRHNVWGVPKKHKNTLSRV--------KPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYVD   73 (145)
T ss_dssp             EEEEEE-CHHHHHHHHHHCEEEECGGGHHHHTTC--------CTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEEC
T ss_pred             EEEEEC-CHHHHHHHHHCCEEECCCCCHHHHHHC--------CCCCEEEEEECCCCCCCCCCCCCEEEEEEEEECCCEEC
T ss_conf             489747-899999998688886157763068537--------89999999967634578865563799999991443202


Q ss_pred             CCCHHHCCCCCCC-----CCCEEEEEEECCCCCCCCCCCCCCCCCCC---EEECCC-CCCCCHHHHHHHHHH
Q ss_conf             8811110136767-----41013799323898643334457899985---431589-700146889999998
Q 006520          462 KNVEYWQQDKWTG-----CFPVKWHIVKDVPNSLLKHITLENNENKP---VTNSRD-TQEIKLEQGLKLIKI  524 (642)
Q Consensus       462 ks~d~WqqdKw~G-----~F~VkWi~vkDVPf~~lkHI~N~~NeNKP---Vt~SRD-gQEIe~e~G~qLLkI  524 (642)
                      .+ ..|...+.++     .++|+|+.+.+||+..+.- .|+.-.|+.   ...-|- ..||+.+-..-+-++
T Consensus        74 ~t-~i~~~~~~~~~~~P~R~~v~~~~~~ev~i~~l~~-~L~fi~~k~~W~~y~~r~g~~~I~~~D~~lI~~~  143 (145)
T d2hd9a1          74 FS-RIFKPHRGGKETYPYRVKIKPIKIGEINFKPLIN-DLKFIKNKKRWSMHFFGKAMRELPEEDYKLIEKL  143 (145)
T ss_dssp             CC-CCSCCTTSSCCCCCEEEEEEEEEEEEEESGGGGG-GCTTCCCSTTGGGGTTTCSEEEECHHHHHHHHHH
T ss_pred             CC-CCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHH-HHHHHCCCHHHHHHHHCCCCEECCHHHHHHHHHH
T ss_conf             66-1466533578647899984786406520889786-7776328443537776477634698999999997