Citrus Sinensis ID: 006530

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-
Protein Sequence
MACVSLASSSSLILSSLDYHRHGFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLAL
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHcccccEEEEEEcccccccEEEcHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHcccEEEcccccccHHHHHHHHHcccEEEEEEccHHHHHHHHHHHcccccccEEEEEEccccccccccccccccccHHHHHHHcHHHHcccccccHHHHHHHHcccccccEEEEEEccccccccccEEcccHHHHHHHHHcccccccccccEEEEEccHHHHHHHHHHHHHHHHccEEEEccHHHHHHHHcHHcccEEEcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHcccEEEEEcccccccccEEcccccccccccccccccccEEEEEEcccccccccccccEEEEccccccccccccHHHHHHHcccccccccccccccccccccccccccccEEEEEcccccEEEcccccccccHHHHHHHHccccccEEEEEEcccccEEEEEEccHHHHHHHHHHcccccccHHHHHccHHHHHHHHHHHHHHcccccccccEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccEEEcHHHHHHHHHHHHHHHHHcccccccEEEEEEcccHHHHHHHHHHHHHcccEEcccccccHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHccccEEEEEEcccccccccccccccEEEcHHHHHHHHHHHHHHcHHHHHHHHcccccccccccEEEEEEEcccccccccEEEcHHHHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHHHHHHHHccEEEEccHHHHHHHHHHccccEEHHcHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHccEEEEcccccccccEEEEccccccccccccccccccEEEEEccccccccccccccEEEEEcccccccccccHHHHHHHHcccccccccccEEEccccccccccccccEEEEEcccccEEEEcccccccccHHHHHHHccccHHEEEEEcccccEEEEEEEccHHHHHHHHHHcccccccHHHHccHHHHHHHHHHHHHHcccccHHccEEEEEccccEcccccccc
Coil and Loop (DISEMBL)
MACVSLASSSSLILSSLDYHRHGFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGlrvigvkpeeklslfsdnsCRWLVADQGMLATGAINvvrgsrsssEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWgkkssvapdiveeipvfsYDEIIDLGREsrkafsdsndarkhykyetigsddiatyvytsgttgnpkgvMLTHKNLLHQIRSLydivpaengdkflsmlppwhvyeRACGYFIFSRGIELMYTAVRNLKDDlqryqphymisvPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFcltrnqkqpSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIgiskagvsgggslpmHIDLFYEAIGVKVQVgygltesspviaarrptcnvlgsvghpinhteikivdaetnevlpagskgivkvrgsqvmqgyfknpsatkqaldedgwlntgdigwiaphhsrgrsrrcggvlvlegrakdtivlstgenveplELEEAALRSSLIRQIVVIgqdqrrpgaiivpdKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKwtskcsfqigpihvvdepftVNFLCLAL
Flexible Loop (DISEMBL)
MACVSLASSSSLILSSLDYHRHGFRVFTRNCVDAVATririsrrnhrfrvFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGkkssvapdiveeipvFSYDEIIDLGResrkafsdsndarkhykyetigsddiaTYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGwiaphhsrgrsrrCGGVLVLegrakdtivlstgenveplELEEAALRSSLIRQIvvigqdqrrpgaiivpDKEEVLMAAKRLSIvhadaselskekTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLAL
Low Complexity Region (SEG)
MACVslasssslilsslDYHRHGFRVFTRNCVDAVATririsrrnhrfrVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSaarrvvaraliriSFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHsrgrsrrcggVLVLEGRAKDTIVLSTGENVEPleleeaalRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLAL
Disordered region (IsUnstruct)
***********LILSSLDYHRHGFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGS****EELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGR*************KHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA*
Disordered Region (DISOPRED)
*********SSLILSSLDYHRHGFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSN*ARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQK*****SAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLAL
Disordered Region (DISEMBL)
**********SLILSSLDYHRHGFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLAL
Disordered Region (DISPRO)
******A**SSLILSSLDYHRHGFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLAL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MACVSLASSSSLILSSLDYHRHGFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	641	2.2.26 [Sep-21-2011]
Q9LK39	722	Probable acyl-activating	yes	no	0.943	0.837	0.683	0.0
Q8W471	727	Long-chain-fatty-acid--[a	no	no	0.887	0.782	0.693	0.0
B2HGV4	600	Long-chain-fatty-acid--Co	yes	no	0.695	0.743	0.296	2e-49
Q7TYX8	600	Long-chain-fatty-acid--Co	yes	no	0.719	0.768	0.286	6e-48
P44446	607	Putative long-chain-fatty	yes	no	0.772	0.815	0.276	7e-48
O53521	600	Long-chain-fatty-acid--Co	yes	no	0.719	0.768	0.284	3e-47
P41216	699	Long-chain-fatty-acid--Co	yes	no	0.756	0.693	0.273	2e-44
P33121	698	Long-chain-fatty-acid--Co	yes	no	0.731	0.671	0.270	2e-43
Q8LKS5	700	Long chain acyl-CoA synth	no	no	0.862	0.79	0.272	2e-41
Q9JID6	698	Long-chain-fatty-acid--Co	yes	no	0.730	0.670	0.264	2e-41

>sp|Q9LK39|AAE16_ARATH Probable acyl-activating enzyme 16, chloroplastic OS=Arabidopsis thaliana GN=AAE16 PE=2 SV=1

 Score =  870 bits (2247), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/609 (68%), Positives = 500/609 (82%), Gaps = 4/609 (0%)

Query: 29  RNCVDAVATRIRISRRNHRF-RVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCR 87
           R+ V+    R+ +    H     F   +LEQEILDF EGLRV+GVK +EK++LF+DNSCR
Sbjct: 88  RSSVEKYGDRVAVVDPYHDPPSTFTYRQLEQEILDFVEGLRVVGVKADEKIALFADNSCR 147

Query: 88  WLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAM 147
           WLVADQG++ATGA+NVVRGSRSS EELL IY HSESVAL V+NPEFFNRIAE+   KAA 
Sbjct: 148 WLVADQGIMATGAVNVVRGSRSSVEELLQIYCHSESVALVVDNPEFFNRIAESFSYKAAP 207

Query: 148 RFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDI 207
           +F+ILLWG+KSS+        PV+SY+EI   G+E R  F+ SND+ K Y+YE I  DDI
Sbjct: 208 KFVILLWGEKSSLV-TAGRHTPVYSYNEIKKFGQERRAKFARSNDSGK-YEYEYIDPDDI 265

Query: 208 ATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFI 267
           AT +YTSGTTGNPKGVMLTH+NLLHQIR+L D VPAE G++FLSMLP WH YERAC YFI
Sbjct: 266 ATIMYTSGTTGNPKGVMLTHQNLLHQIRNLSDFVPAEAGERFLSMLPSWHAYERACEYFI 325

Query: 268 FSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALI 327
           F+ G+E  YT++R LKDDL+RYQPHY+ISVPLVYETLYSGIQKQI  SS AR+ +A  LI
Sbjct: 326 FTCGVEQKYTSIRFLKDDLKRYQPHYLISVPLVYETLYSGIQKQISASSPARKFLALTLI 385

Query: 328 RISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQ 387
           ++S AYT  KR+YEG CLT+NQK P Y+V+L+DWLWAR++   LWPLH+LAEKLV++KI+
Sbjct: 386 KVSLAYTEMKRVYEGLCLTKNQKPPMYIVSLVDWLWARVVAFFLWPLHMLAEKLVHRKIR 445

Query: 388 SAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHP 447
           S+IGI+KAGVSGGGSLPMH+D F+EAIGV VQ GYGLTE+SPV++ARR  CNVLGSVGHP
Sbjct: 446 SSIGITKAGVSGGGSLPMHVDKFFEAIGVNVQNGYGLTETSPVVSARRLRCNVLGSVGHP 505

Query: 448 INHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW 507
           I  TE KIVD ET  VLP GSKGIVKVRG  VM+GY+KNP ATKQ +D+DGW NTGD+GW
Sbjct: 506 IKDTEFKIVDHETGTVLPPGSKGIVKVRGPPVMKGYYKNPLATKQVIDDDGWFNTGDMGW 565

Query: 508 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ 567
           I P HS GRSR CGGV+VLEGRAKDTIVLSTGENVEPLE+EEAA+RS+LI+QIVVIGQDQ
Sbjct: 566 ITPQHSTGRSRSCGGVIVLEGRAKDTIVLSTGENVEPLEIEEAAMRSNLIQQIVVIGQDQ 625

Query: 568 RRPGAIIVPDKEEVLMAAK-RLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIH 626
           RR GAI++P+KE    AAK ++S V ++ +ELSKE   S++Y ELRKWTS+CSFQ+GP+ 
Sbjct: 626 RRLGAIVIPNKEAAEGAAKQKISPVDSEVNELSKETITSMVYEELRKWTSQCSFQVGPVL 685

Query: 627 VVDEPFTVN 635
           +VDEPFT++
Sbjct: 686 IVDEPFTID 694

May be involved in the activation of fatty acids to acyl-carrier-protein.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|Q8W471|AAE15_ARATH Long-chain-fatty-acid--[acyl-carrier-protein] ligase AEE15, chloroplastic OS=Arabidopsis thaliana GN=AAE15 PE=1 SV=1

 Score =  850 bits (2196), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/581 (69%), Positives = 485/581 (83%), Gaps = 12/581 (2%)

Query: 55  KLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEEL 114
           +LEQEILDFAEGLRV+GVK +EK++LF+DNSCRWLV+DQG++ATGA+NVVRGSRSS EEL
Sbjct: 131 QLEQEILDFAEGLRVLGVKADEKIALFADNSCRWLVSDQGIMATGAVNVVRGSRSSVEEL 190

Query: 115 LHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYD 174
           L IY HSESVA+ V+NPEFFNRIAE+  SKA++RF+ILLWG+KSS+    ++ IPV+SY 
Sbjct: 191 LQIYRHSESVAIVVDNPEFFNRIAESFTSKASLRFLILLWGEKSSLVTQGMQ-IPVYSYA 249

Query: 175 EIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI 234
           EII+ G+ESR   S SND R  Y+ + I SDD A  +YTSGTTGNPKGVMLTH+NLLHQI
Sbjct: 250 EIINQGQESRAKLSASNDTRS-YRNQFIDSDDTAAIMYTSGTTGNPKGVMLTHRNLLHQI 308

Query: 235 RSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYM 294
           + L   VPA+ GDKFLSMLP WH YERA  YFIF+ G+E MYT++R LKDDL+RYQP+Y+
Sbjct: 309 KHLSKYVPAQAGDKFLSMLPSWHAYERASEYFIFTCGVEQMYTSIRYLKDDLKRYQPNYI 368

Query: 295 ISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY 354
           +SVPLVYETLYSGIQKQI  SSA R+ +A  LI++S AY   KRIYEG CLT+ QK P Y
Sbjct: 369 VSVPLVYETLYSGIQKQISASSAGRKFLALTLIKVSMAYMEMKRIYEGMCLTKEQKPPMY 428

Query: 355 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAI 414
           +VA +DWLWAR+I A+LWPLH+LA+KL+YKKI S+IGISKAG+SGGGSLP+H+D F+EAI
Sbjct: 429 IVAFVDWLWARVIAALLWPLHMLAKKLIYKKIHSSIGISKAGISGGGSLPIHVDKFFEAI 488

Query: 415 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV 474
           GV +Q GYGLTE+SPV+ AR  +CNVLGS GHP++ TE KIVD ETN VLP GSKGI+KV
Sbjct: 489 GVILQNGYGLTETSPVVCARTLSCNVLGSAGHPMHGTEFKIVDPETNNVLPPGSKGIIKV 548

Query: 475 RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTI 534
           RG QVM+GY+KNPS TKQ L+E GW NTGD GWIAPHHS+GRSR CGGV+VLEGRAKDTI
Sbjct: 549 RGPQVMKGYYKNPSTTKQVLNESGWFNTGDTGWIAPHHSKGRSRHCGGVIVLEGRAKDTI 608

Query: 535 VLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHAD 594
           VLSTGENVEPLE+EEAA+RS +I QIVVIGQD+RR GAII+P+KEE    A+R+      
Sbjct: 609 VLSTGENVEPLEIEEAAMRSRVIEQIVVIGQDRRRLGAIIIPNKEE----AQRVD----- 659

Query: 595 ASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 635
             E SKE   SL+Y ELRKWTS+CSFQ+GP+ +VD+PFT++
Sbjct: 660 -PETSKETLKSLVYQELRKWTSECSFQVGPVLIVDDPFTID 699

Probably involved in the activation of fatty acids to acyl-carrier-protein prior to fatty acid elongation in plastids. Acts on medium- to long-chain fatty acids.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 0

>sp|B2HGV4|FAC15_MYCMM Long-chain-fatty-acid--CoA ligase FadD15 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=fadD15 PE=3 SV=1

 Score =  197 bits (502), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 155/522 (29%), Positives = 238/522 (45%), Gaps = 76/522 (14%)

Query: 64  AEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSES 123
           A GL  +GV+  +++S+FS     W + D  +LA GA+ V     SS+E++  +  +SE+
Sbjct: 59  ALGLIALGVQAGDRVSIFSATCYEWAILDLAILAVGAVTVPIYETSSAEQVRWVLQNSEA 118

Query: 124 VALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRES 183
           V    E       IAE      A+R ++++ G        + EE            G   
Sbjct: 119 VLAFAETDAHAAMIAELTGDLPALRRVLVINGSGPKALEQLAEE-----------GGSVD 167

Query: 184 RKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA 243
           R   +   DA +        S D AT +YTSGTTG PKG  LTH NLLH+IR   + +P 
Sbjct: 168 RAELTARLDALR--------SSDPATLIYTSGTTGRPKGCQLTHSNLLHEIRGTQECLPT 219

Query: 244 --ENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA-VRNLKDDLQRYQPHYMISVPLV 300
               G + L  LP  HV  RA     F+  + + +T+ ++NL      ++P  ++SVP V
Sbjct: 220 LLTPGQRLLVFLPLAHVLARALTLSAFASKVTVGFTSDIKNLLPLFAVFKPTVVVSVPRV 279

Query: 301 YETLYSGIQKQIFTS--SAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL 358
           +E +Y+  ++        A  ++ A+  +  S A+              +  +P  L   
Sbjct: 280 FEKVYNTAEQNASNDGKGAIFKLAAQTAVDWSRAW--------------DDGRPGLL--- 322

Query: 359 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGIS-KAGVSGGGSLPMHIDLFYEAIGVK 417
                       L   H L ++LVY K+++A+G    A VSGG  L   +  FY  +G+ 
Sbjct: 323 ------------LRAKHALFDRLVYHKLRAALGGDCHAAVSGGAPLGARLGHFYRGVGLT 370

Query: 418 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 477
           +  GYGLTE+S  +   +     +G+VG  +    ++I D            G + VRG 
Sbjct: 371 IYEGYGLTETSAAVTVNQIDALKIGTVGKLVPGNSLRIAD-----------DGELLVRGG 419

Query: 478 QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLS 537
            V  GY++N  AT +A   DGW  TGD+G I             G L + GR K+ IV +
Sbjct: 420 VVFSGYWRNEQATDEAF-TDGWFRTGDLGAIDDD----------GFLSITGRKKELIVTA 468

Query: 538 TGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE 579
            G+NV P  LE+      LI Q +V+G  +   GA+I  D E
Sbjct: 469 GGKNVAPAVLEDQLRAHPLISQAMVVGDAKPFIGALITIDPE 510

Catalyzes the activation of long-chain fatty acids as acyl-coenzyme A (acyl-CoA), which are then transferred to the multifunctional polyketide synthase (PKS) type III for further chain extension.

Mycobacterium marinum (strain ATCC BAA-535 / M) (taxid: 216594)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q7TYX8|FAC15_MYCBO Long-chain-fatty-acid--CoA ligase FadD15 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=fadD15 PE=3 SV=2

 Score =  192 bits (489), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 153/534 (28%), Positives = 244/534 (45%), Gaps = 73/534 (13%)

Query: 50  VFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRS 109
           V C     Q I   A GL  +GV+  +++ +FS     W + D  +LA GA+ V     S
Sbjct: 46  VTCAEAANQ-IRAAALGLISLGVQAGDRVVIFSATRYEWAILDFAILAVGAVTVPIYETS 104

Query: 110 SSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIP 169
           S+E++  +   SE+V L  E       +AE   S  A+R ++ + G      P+ ++ + 
Sbjct: 105 SAEQVRWVLQDSEAVVLFAETDSHATMVAELSGSVPALREVLQIAGS----GPNALDRL- 159

Query: 170 VFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKN 229
                          +A +  + A    +   + S D AT +YTSGTTG PKG  LT  N
Sbjct: 160 --------------TEAGASVDPAELTARLAALRSTDPATLIYTSGTTGRPKGCQLTQSN 205

Query: 230 LLHQIRSLYDIVPA--ENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA-VRNLKDDL 286
           L+H+I+      P     G++ L  LP  HV  RA     F   + + +T+ ++NL   L
Sbjct: 206 LVHEIKGARAYHPTLLRKGERLLVFLPLAHVLARAISMAAFHSKVTVGFTSDIKNLLPML 265

Query: 287 QRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLT 346
             ++P  ++SVP V+E +Y+  ++    +   R     A   + ++           C  
Sbjct: 266 AVFKPTVVVSVPRVFEKVYNTAEQNAANAGKGRIFAIAAQTAVDWSEA---------C-- 314

Query: 347 RNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGIS-KAGVSGGGSLPM 405
            ++  P  L               L   H + ++LVY+K+++A+G + +A VSGG  L  
Sbjct: 315 -DRGGPGLL---------------LRAKHAVFDRLVYRKLRAALGGNCRAAVSGGAPLGA 358

Query: 406 HIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLP 465
            +  FY   G+ +  GYGL+E+S  +A  +     +G+VG P+    ++I D        
Sbjct: 359 RLGHFYRGAGLTIYEGYGLSETSGGVAISQFNDLKIGTVGKPVPGNSLRIAD-------- 410

Query: 466 AGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLV 525
               G + VRG  V  GY++N  AT +A   DGW  TGD+G +             G L 
Sbjct: 411 ---DGELLVRGGVVFSGYWRNEQATTEAF-TDGWFKTGDLGAVDED----------GFLT 456

Query: 526 LEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE 579
           + GR K+ IV + G+NV P  LE+      LI Q VV+G  +   GA+I  D E
Sbjct: 457 ITGRKKEIIVTAGGKNVAPAVLEDQLRAHPLISQAVVVGDAKPFIGALITIDPE 510

Catalyzes the activation of long-chain fatty acids as acyl-coenzyme A (acyl-CoA), which are then transferred to the multifunctional polyketide synthase (PKS) type III for further chain extension.

Mycobacterium bovis (taxid: 1765)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|P44446|LCFH_HAEIN Putative long-chain-fatty-acid--CoA ligase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0002 PE=3 SV=1

 Score =  192 bits (488), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 154/556 (27%), Positives = 261/556 (46%), Gaps = 61/556 (10%)

Query: 56  LEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELL 115
            ++++   +  L    +  ++K+++F+ N  RW + D   L   AI V   + +++++  
Sbjct: 48  FQEQLNQLSRALLAHNIDVQDKIAIFAHNMERWTIVDIATLQIRAITVPIYATNTAQQAE 107

Query: 116 HIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPV-FSYD 174
            I NH++   L V + E +++  E       ++ I+ +   KS++    +++ P+  +++
Sbjct: 108 FILNHADVKILFVGDQEQYDQTLEIAHHCPKLQKIVAM---KSTIQ---LQQDPLSCTWE 161

Query: 175 EIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI 234
             I  G  +++   D    R + K  +    D+ T +YTSGTTG PKGVML + NL HQ+
Sbjct: 162 SFIKTGSNAQQ---DELTQRLNQKQLS----DLFTIIYTSGTTGEPKGVMLDYANLAHQL 214

Query: 235 RSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRN-LKDDLQRYQPHY 293
            +    +   + D  LS LP  H++ERA   +I  RG  L Y    N ++  L   +P  
Sbjct: 215 ETHDLSLNVTDQDISLSFLPFSHIFERAWAAYILHRGAILCYLEDTNQVRSALTEIRPTL 274

Query: 294 MISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS 353
           M +VP  YE +Y+ +  ++  +   R+++    I +   Y         F L  N K   
Sbjct: 275 MCAVPRFYEKIYAAVLDKVQKAPKLRQIMFHWAISVGQKY---------FDLRANNKAIP 325

Query: 354 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGIS-KAGVSGGGSLPMHIDLFYE 412
           +L               L     LA+KLV  K++  +G   K    GG  L   I LF+ 
Sbjct: 326 FL---------------LKKQFALADKLVLSKLRQLLGGRIKMMPCGGAKLEPAIGLFFH 370

Query: 413 AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIV 472
           AIG+ +++GYG+TE++  ++          S+G  +   E+KI   E NE+L        
Sbjct: 371 AIGINIKLGYGMTETTATVSCWHDFQFNPNSIGTLMPKAEVKI--GENNEIL-------- 420

Query: 473 KVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKD 532
            VRG  VM+GY+K P  T QA  EDG+L TGD G               G L +  R K+
Sbjct: 421 -VRGGMVMKGYYKKPEETAQAFTEDGFLKTGDAGEFDEQ----------GNLFITDRIKE 469

Query: 533 TIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVH 592
            +  S G+ + P  +E    +   I QI +I   ++   A+IVP  + +   AK+L+I +
Sbjct: 470 LMKTSNGKYIAPQYIESKIGKDKFIEQIAIIADAKKYVSALIVPCFDSLEEYAKQLNIKY 529

Query: 593 ADASELSKEKTISLLY 608
            D  EL K   I  ++
Sbjct: 530 HDRLELLKNSDILKMF 545

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|O53521|FAC15_MYCTU Long-chain-fatty-acid--CoA ligase FadD15 OS=Mycobacterium tuberculosis GN=fadD15 PE=1 SV=3

 Score =  190 bits (483), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 152/534 (28%), Positives = 243/534 (45%), Gaps = 73/534 (13%)

Query: 50  VFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRS 109
           V C     Q I   A GL  +GV+  +++ +FS     W + D  +LA GA+ V     S
Sbjct: 46  VTCAEAANQ-IRAAALGLISLGVQAGDRVVIFSATRYEWAILDFAILAVGAVTVPTYETS 104

Query: 110 SSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIP 169
           S+E++  +   SE+V L  E       +AE   S  A+R ++ + G      P+ ++ + 
Sbjct: 105 SAEQVRWVLQDSEAVVLFAETDSHATMVAELSGSVPALREVLQIAGS----GPNALDRL- 159

Query: 170 VFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKN 229
                          +A +  + A    +   + S D AT +YTSGTTG PKG  LT  N
Sbjct: 160 --------------TEAGASVDPAELTARLAALRSTDPATLIYTSGTTGRPKGCQLTQSN 205

Query: 230 LLHQIRSLYDIVPA--ENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA-VRNLKDDL 286
           L+H+I+      P     G++ L  LP  HV  RA     F   + + +T+ ++NL   L
Sbjct: 206 LVHEIKGARAYHPTLLRKGERLLVFLPLAHVLARAISMAAFHSKVTVGFTSDIKNLLPML 265

Query: 287 QRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLT 346
             ++P  ++SVP V+E +Y+  ++    +   R     A   + ++           C  
Sbjct: 266 AVFKPTVVVSVPRVFEKVYNTAEQNAANAGKGRIFAIAAQTAVDWSEA---------C-- 314

Query: 347 RNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGIS-KAGVSGGGSLPM 405
            ++  P  L               L   H + ++LVY+K+++A+G + +A VSGG  L  
Sbjct: 315 -DRGGPGLL---------------LRAKHAVFDRLVYRKLRAALGGNCRAAVSGGAPLGA 358

Query: 406 HIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLP 465
            +  FY   G+ +  GYGL+ +S  +A  +     +G+VG P+    ++I D        
Sbjct: 359 RLGHFYRGAGLTIYEGYGLSGTSGGVAISQFNDLKIGTVGKPVPGNSLRIAD-------- 410

Query: 466 AGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLV 525
               G + VRG  V  GY++N  AT +A   DGW  TGD+G +             G L 
Sbjct: 411 ---DGELLVRGGVVFSGYWRNEQATTEAF-TDGWFKTGDLGAVDED----------GFLT 456

Query: 526 LEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE 579
           + GR K+ IV + G+NV P  LE+      LI Q VV+G  +   GA+I  D E
Sbjct: 457 ITGRKKEIIVTAGGKNVAPAVLEDQLRAHPLISQAVVVGDAKPFIGALITIDPE 510

Catalyzes the activation of long-chain fatty acids as acyl-coenzyme A (acyl-CoA), which are then transferred to the multifunctional polyketide synthase (PKS) type III for further chain extension.

Mycobacterium tuberculosis (taxid: 1773)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|P41216|ACSL1_MOUSE Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculus GN=Acsl1 PE=1 SV=2

 Score =  181 bits (459), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 156/571 (27%), Positives = 256/571 (44%), Gaps = 86/571 (15%)

Query: 58  QEILDFAE----GLRVIGVKP--EEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSS 111
           +E+ + AE    GL   G KP  E+ + LFS N   W++ +QG  +   + V       +
Sbjct: 125 KEVAELAECIGSGLIQKGFKPCSEQFIGLFSQNRPEWVIVEQGCFSYSMVVVPLYDTLGA 184

Query: 112 EELLHIYNHSESVALAVENPEFFNRIAETLCSK--AAMRFIILLWGKKSSVAPDIVEE-- 167
           + + +I N +E   +  + PE    + E + +K    ++ I+++     S   D+VE   
Sbjct: 185 DAITYIVNKAELSVIFADKPEKAKLLLEGVENKLTPCLKIIVIM----DSYGSDLVERGK 240

Query: 168 ---IPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVM 224
              + + S   + DLGR +R             K +    +D+A   +TSGTTGNPKG M
Sbjct: 241 KCGVEIISLKALEDLGRVNR------------VKPKPPEPEDLAIICFTSGTTGNPKGAM 288

Query: 225 LTHKNLLHQ----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA-- 278
           +TH+N+++     I++      A   D  +S LP  H++E      +   G ++ +    
Sbjct: 289 ITHQNIINDCSGFIKATESAFIASTDDVLISFLPLAHMFETVVECVMLCHGAKIGFFQGD 348

Query: 279 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKR 338
           +R L DDL+  QP     VP +   ++  I  Q                    A T+ KR
Sbjct: 349 IRLLMDDLKVLQPTIFPVVPRLLNRMFDRIFGQ--------------------ANTSLKR 388

Query: 339 IYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVS 398
               F   R + +    +   + LW               +KL++ KIQS++G  K  + 
Sbjct: 389 WLLDFASKRKEAELRSGIVRNNSLW---------------DKLIFHKIQSSLG-GKVRLM 432

Query: 399 GGGSLPMH---IDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 455
             G+ P+    +     A+G +   GYG TE +       P     G VG P+    +K+
Sbjct: 433 ITGAAPVSATVLTFLRTALGCQFYEGYGQTECTAGCCLSLPGDWTAGHVGAPMPCNYVKL 492

Query: 456 VDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG 515
           VD E    L +  +G V V+G+ V +GY K+P+ T +ALD+DGWL+TGDIG   P+    
Sbjct: 493 VDVEEMNYLASKGEGEVCVKGANVFKGYLKDPARTAEALDKDGWLHTGDIGKWLPN---- 548

Query: 516 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD-QRRPGAII 574
                 G L +  R K    L+ GE + P ++E   LRS  + Q+ V G+  Q    A++
Sbjct: 549 ------GTLKIIDRKKHIFKLAQGEYIAPEKIENIYLRSEAVAQVFVHGESLQAFLIAVV 602

Query: 575 VPDKEEVLMAAKRLSIVHADASELSKEKTIS 605
           VPD E +   A++  +      EL + K I+
Sbjct: 603 VPDVESLPSWAQKRGL-QGSFEELCRNKDIN 632

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses oleate, arachidonate, eicosapentaenoate and docosahexaenoate as substrates.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|P33121|ACSL1_HUMAN Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapiens GN=ACSL1 PE=1 SV=1

 Score =  177 bits (450), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 148/547 (27%), Positives = 244/547 (44%), Gaps = 78/547 (14%)

Query: 74  PEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVALAVENPEF 133
           P++ + +F+ N   W++ +QG  A   + V       +E + +I N +E   + V+ PE 
Sbjct: 146 PDQFIGIFAQNRPEWVIIEQGCFAYSMVIVPLYDTLGNEAITYIVNKAELSLVFVDKPEK 205

Query: 134 FNRIAETLCSK--AAMRFIILLWGKKSSVAPDIVEE-----IPVFSYDEIIDLGRESRKA 186
              + E + +K    ++ I+++     +   ++VE      + V S   + DLGR +R+ 
Sbjct: 206 AKLLLEGVENKLIPGLKIIVVM----DAYGSELVERGQRCGVEVTSMKAMEDLGRANRR- 260

Query: 187 FSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQ----IRSLYDIVP 242
                      K +    +D+A   +TSGTTGNPKG M+TH+N++      +++  + V 
Sbjct: 261 -----------KPKPPAPEDLAVICFTSGTTGNPKGAMVTHRNIVSDCSAFVKATENTVN 309

Query: 243 AENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA--VRNLKDDLQRYQPHYMISVPLV 300
               D  +S LP  H++ER     +   G ++ +    +R L DDL+  QP     VP +
Sbjct: 310 PCPDDTLISFLPLAHMFERVVECVMLCHGAKIGFFQGDIRLLMDDLKVLQPTVFPVVPRL 369

Query: 301 YETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID 360
              ++  I  Q                    A T  KR    F   R + +    +   +
Sbjct: 370 LNRMFDRIFGQ--------------------ANTTLKRWLLDFASKRKEAELRSGIIRNN 409

Query: 361 WLWARIICAILWPLHLLAEKLVYKKIQSAIGIS-KAGVSGGGSLPMHIDLFYEA-IGVKV 418
            LW R               L++ K+QS++G   +  V+G   +   +  F  A +G + 
Sbjct: 410 SLWDR---------------LIFHKVQSSLGGRVRLMVTGAAPVSATVLTFLRAALGCQF 454

Query: 419 QVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQ 478
             GYG TE +       P     G VG P+    IK+VD E    + A  +G V V+G  
Sbjct: 455 YEGYGQTECTAGCCLTMPGDWTAGHVGAPMPCNLIKLVDVEEMNYMAAEGEGEVCVKGPN 514

Query: 479 VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLST 538
           V QGY K+P+ T +ALD+DGWL+TGDIG   P+          G L +  R K    L+ 
Sbjct: 515 VFQGYLKDPAKTAEALDKDGWLHTGDIGKWLPN----------GTLKIIDRKKHIFKLAQ 564

Query: 539 GENVEPLELEEAALRSSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASE 597
           GE + P ++E   +RS  + Q+ V G+  Q    AI+VPD E +   A++         E
Sbjct: 565 GEYIAPEKIENIYMRSEPVAQVFVHGESLQAFLIAIVVPDVETLCSWAQKRGF-EGSFEE 623

Query: 598 LSKEKTI 604
           L + K +
Sbjct: 624 LCRNKDV 630

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitoleate, oleate and linoleate.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q8LKS5|LACS7_ARATH Long chain acyl-CoA synthetase 7, peroxisomal OS=Arabidopsis thaliana GN=LACS7 PE=1 SV=2

 Score =  171 bits (433), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 173/636 (27%), Positives = 267/636 (41%), Gaps = 83/636 (13%)

Query: 18  DYHRHGFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEK 77
           D   H    +  N    + TR+R       +      +   E      GL   GV   + 
Sbjct: 88  DNFVHAVETYAEN--KYLGTRVRSDGTIGEYSWMTYGEAASERQAIGSGLLFHGVNQGDC 145

Query: 78  LSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRI 137
           + L+  N   WLV D    A   ++V        + +  + NH+   A+    P+  N +
Sbjct: 146 VGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIFCV-PQTLNIL 204

Query: 138 AETLCSKAAMRFIILLWGKKSSVAPDIVEE--IPVFSYDEIIDLGRESRKAFSDSNDARK 195
              L    ++R I+++ G    + P +     + + SY +++  GR S   FS       
Sbjct: 205 LSFLAEIPSIRLIVVVGGADEHL-PSLPRGTGVTIVSYQKLLSQGRSSLHPFSPPK---- 259

Query: 196 HYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAE--NGDKFLSML 253
                    +DIAT  YTSGTTG PKGV+LTH NL+  +      V AE    D ++S L
Sbjct: 260 --------PEDIATICYTSGTTGTPKGVVLTHGNLIANVAG--SSVEAEFFPSDVYISYL 309

Query: 254 PPWHVYERACGYFIFSRGIELMYTA--VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQ 311
           P  H+YERA        G+ + +    V  L DD    +P    SVP +Y  +Y GI   
Sbjct: 310 PLAHIYERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGITSA 369

Query: 312 IFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAIL 371
           + +S     VV + L  I  AY + K+         N + PS                  
Sbjct: 370 VKSSG----VVKKRLFEI--AYNSKKQA------IINGRTPS----------------AF 401

Query: 372 WPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMH---IDLFYEAIGVKVQVGYGLTESS 428
           W      +KLV+ KI+  +G  +    G G+ P+    +D      G  V+ GYG+TE+S
Sbjct: 402 W------DKLVFNKIKEKLG-GRVRFMGSGASPLSPDVMDFLRICFGCSVREGYGMTETS 454

Query: 429 PVIAARRPTCNVLGSVGHPINHTEIKIVDAE----TNEVLPAGSKGIVKVRGSQVMQGYF 484
            VI+A     N+ G VG P    E+K+VD      T++  P   +G + VRG  + +GY+
Sbjct: 455 CVISAMDDGDNLSGHVGSPNPACEVKLVDVPEMNYTSDDQPY-PRGEICVRGPIIFKGYY 513

Query: 485 KNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEP 544
           K+   T++ LD DGWL+TGDIG   P          GG L +  R K+   L+ GE + P
Sbjct: 514 KDEEQTREILDGDGWLHTGDIGLWLP----------GGRLKIIDRKKNIFKLAQGEYIAP 563

Query: 545 LELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMA-AKRLSIVHADASELSKE-- 601
            ++E    +   + Q  + G         IV    EV+   A    I +    +L  +  
Sbjct: 564 EKIENVYTKCRFVSQCFIHGDSFNSSLVAIVSVDPEVMKDWAASEGIKYEHLGQLCNDPR 623

Query: 602 --KTISLLYGELRKWTSKCSFQIG-PIHVVDEPFTV 634
             KT+     +L +      F+    + +V EPFT+
Sbjct: 624 VRKTVLAEMDDLGREAQLRGFEFAKAVTLVPEPFTL 659

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Displays redundant function with LACS7 into the seed development process.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9JID6|ACSL1_CAVPO Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porcellus GN=ACSL1 PE=2 SV=1

 Score =  170 bits (431), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 145/548 (26%), Positives = 244/548 (44%), Gaps = 80/548 (14%)

Query: 74  PEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVALAVENPEF 133
           P++ + +F+ N   W++ +Q   A   + V       ++ + +I N +E   +  + PE 
Sbjct: 146 PDQFIGIFAQNRPEWVIIEQACFAYSMVVVPLYDTLGADAITYIVNKAELSVIFADKPEK 205

Query: 134 FNRIAETLCSK--AAMRFIILLWGKKSSVAPDIVEE-----IPVFSYDEIIDLGRESRKA 186
              + E++ +K    ++ I+++     S   ++VE+     + V S   +  LGR +R+ 
Sbjct: 206 ARILLESVENKLTPGLKIIVVM----DSYGSELVEQGKKCGVEVISLKAMEGLGRANRR- 260

Query: 187 FSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQ----IRSLYDIVP 242
                      K +    DD+A   +TSGTTGNPKG M+THKN++      +++    + 
Sbjct: 261 -----------KPKPPEPDDLAVICFTSGTTGNPKGAMITHKNVVSDCSAFVKATEKALV 309

Query: 243 AENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA--VRNLKDDLQRYQPHYMISVPLV 300
               D  +S LP  H+YE+     +   G ++ +    +R L DDL+  QP     VP +
Sbjct: 310 LNASDIHISFLPLAHMYEQLLQCVMLCHGAKIGFFQGDIRLLMDDLKALQPTIFPVVPRL 369

Query: 301 YETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID 360
              ++  I  Q                    A T  KR    F   R + +    +   +
Sbjct: 370 LNRMFDRIFAQ--------------------ANTTVKRWLLDFASKRKEAELRSGIIRNN 409

Query: 361 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMH---IDLFYEAIGVK 417
            +W               +KL++ KIQS++G  K  +   G+ P+    +     A+G +
Sbjct: 410 SVW---------------DKLIFHKIQSSLG-GKVRLMVTGAAPVSATVLTFLRAALGCQ 453

Query: 418 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 477
              GYG TE +   +   P     G VG P+    IK+VD E    + A  +G V V+G 
Sbjct: 454 FYEGYGQTECTAGCSLSVPGDWTAGHVGAPMPCNFIKLVDVEEMNYMAAMGEGEVCVKGP 513

Query: 478 QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLS 537
            V +GY K+P+ T +ALD+DGWL+TGDIG   P+          G L +  R K    L+
Sbjct: 514 NVFKGYLKDPAKTAEALDKDGWLHTGDIGKWLPN----------GTLKIIDRKKHIFKLA 563

Query: 538 TGENVEPLELEEAALRSSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADAS 596
            GE + P ++E   +RS  + Q+ V G+  Q    AI+VPD E +   A++         
Sbjct: 564 QGEYIAPEKIENIYVRSEPVAQVFVHGESLQAFLIAIVVPDAESLASWARKRGF-EGSFE 622

Query: 597 ELSKEKTI 604
           EL + K +
Sbjct: 623 ELCRNKDV 630

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitoleate, oleate and linoleate.

Cavia porcellus (taxid: 10141)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	641
224129204	706	predicted protein [Populus trichocarpa]	0.906	0.822	0.757	0.0
296089272	730	unnamed protein product [Vitis vinifera]	0.906	0.795	0.746	0.0
225439252	691	PREDICTED: long-chain-fatty-acid--CoA li	0.906	0.840	0.746	0.0
224055821	694	predicted protein [Populus trichocarpa]	0.906	0.837	0.741	0.0
356512427	733	PREDICTED: putative acyl-CoA synthetase	0.907	0.793	0.719	0.0
449527657	672	PREDICTED: probable acyl-activating enzy	0.906	0.864	0.697	0.0
449441378	731	PREDICTED: probable acyl-activating enzy	0.906	0.794	0.697	0.0
22331297	722	AMP-dependent synthetase and ligase fami	0.943	0.837	0.683	0.0
20799733	722	acyl-CoA synthetase-like protein [Arabid	0.943	0.837	0.683	0.0
297835432	722	hypothetical protein ARALYDRAFT_898924 [	0.943	0.837	0.681	0.0

>gi|224129204|ref|XP_002328916.1| predicted protein [Populus trichocarpa] gi|222839346|gb|EEE77683.1| predicted protein [Populus trichocarpa]

 Score =  919 bits (2375), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/581 (75%), Positives = 506/581 (87%)

Query: 55  KLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEEL 114
           +LEQEILDF+EGLRVIGVKP+EKL+LF+DNS RWLV DQGM+A GA++VVRGSRSS EEL
Sbjct: 98  QLEQEILDFSEGLRVIGVKPDEKLALFADNSYRWLVTDQGMMAMGAVDVVRGSRSSIEEL 157

Query: 115 LHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYD 174
           L IY HSESVALAV+NPE FNRI ET CSKAA RF+ILLWG+KS +A + +E IP+FSY 
Sbjct: 158 LQIYIHSESVALAVDNPELFNRIVETFCSKAAPRFVILLWGEKSHLAINRMEGIPIFSYK 217

Query: 175 EIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI 234
           EIIDLG+ES KAFSDS+DAR+HYKYETI SDDIAT VYTSGTTGNPKGVMLTHKNLLHQI
Sbjct: 218 EIIDLGQESCKAFSDSDDARQHYKYETISSDDIATLVYTSGTTGNPKGVMLTHKNLLHQI 277

Query: 235 RSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYM 294
            +L+D+VPA+  D+FLSMLPPWH YERA  YFIF+ G E +YT VRNLK DLQ+YQPHY+
Sbjct: 278 NNLWDVVPAQPADRFLSMLPPWHAYERAAEYFIFTHGTEQVYTTVRNLKVDLQQYQPHYL 337

Query: 295 ISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY 354
           I+VPLV+ETLYSGIQKQ+ TSSA R+++A   I+IS  Y   KRIYEG  L R++K+P Y
Sbjct: 338 ITVPLVFETLYSGIQKQLSTSSALRKILAFMFIKISLTYMEMKRIYEGTYLVRSRKEPPY 397

Query: 355 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAI 414
            V+++DWLWARII AIL P+H+LA+KLVY KI SAIGISKAGVSGGGSLP H+D F+EAI
Sbjct: 398 FVSMLDWLWARIIAAILLPVHMLAKKLVYSKIHSAIGISKAGVSGGGSLPSHVDKFFEAI 457

Query: 415 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV 474
           GV VQ GYG+TESSPV AARRP+ NVLGS+G PI HTE KIVDAET E LP GSKGIVKV
Sbjct: 458 GVVVQNGYGMTESSPVTAARRPSNNVLGSIGLPIRHTEFKIVDAETGEALPHGSKGIVKV 517

Query: 475 RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTI 534
           RG QVM+GY+KNP ATKQA+DEDGWLN+GDIGWIAP+HSRGRSR CGGV+VLEGRAKDTI
Sbjct: 518 RGPQVMKGYYKNPLATKQAVDEDGWLNSGDIGWIAPYHSRGRSRHCGGVIVLEGRAKDTI 577

Query: 535 VLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHAD 594
           VL TGENVEPLELEEAA+RSSLI+QIVVIGQDQRR GAI+VP+K+EVL AAK+ SIV  D
Sbjct: 578 VLLTGENVEPLELEEAAMRSSLIQQIVVIGQDQRRLGAIVVPNKDEVLEAAKKWSIVDPD 637

Query: 595 ASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 635
           A+ELSK++  SLL  ELRKWTS CSFQIGPI V+DEPFT++
Sbjct: 638 ATELSKKQITSLLNEELRKWTSGCSFQIGPILVIDEPFTID 678

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089272|emb|CBI39044.3| unnamed protein product [Vitis vinifera]

 Score =  909 bits (2349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/581 (74%), Positives = 501/581 (86%)

Query: 55  KLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEEL 114
           +LEQEILDF+EGLR IGVKP+EKL+LF+DNSCRWL+ADQG++A GAINVVRGSRSS EEL
Sbjct: 122 QLEQEILDFSEGLRAIGVKPDEKLALFADNSCRWLIADQGIMAIGAINVVRGSRSSVEEL 181

Query: 115 LHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYD 174
           L IY HSESVALAV+NPE F RIAET CS+AA+RF++LLWG+KS +  ++++ +PVF+Y 
Sbjct: 182 LQIYIHSESVALAVDNPELFGRIAETFCSRAAIRFVVLLWGEKSCLPSEVMDRVPVFNYK 241

Query: 175 EIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI 234
           EIIDLGRE R  F DS+ ARK+Y YE I S+DIAT VYTSGTTGNPKGVMLTH+NLLHQI
Sbjct: 242 EIIDLGRECRSVFLDSHYARKNYIYEAISSNDIATLVYTSGTTGNPKGVMLTHQNLLHQI 301

Query: 235 RSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYM 294
           ++L+DIVPAE GD+FLSMLP WH YERA  YFIF+ GIE +YT V NLK+DL+RYQP Y+
Sbjct: 302 KNLWDIVPAEPGDRFLSMLPSWHAYERASEYFIFTHGIEQVYTTVPNLKEDLRRYQPQYL 361

Query: 295 ISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY 354
           ISVPLVYETLYSGIQKQI TSS  R++VA   IRIS AY   KRIYEG  L ++QKQ SY
Sbjct: 362 ISVPLVYETLYSGIQKQISTSSTVRKLVALTFIRISLAYMELKRIYEGKFLQKSQKQYSY 421

Query: 355 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAI 414
           + ++ DWLWA+II AILWP+H+L +KLVY KI SAIGISKAGVSGGGSLP H+D F+EAI
Sbjct: 422 IASIFDWLWAKIIAAILWPVHMLGKKLVYSKIHSAIGISKAGVSGGGSLPSHVDRFFEAI 481

Query: 415 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV 474
            +KVQ GYGLTE SPV AARRPTCNVLGSVGHPI HTEIKIVD+ET+E+LP GSKGIVKV
Sbjct: 482 DIKVQNGYGLTECSPVTAARRPTCNVLGSVGHPIRHTEIKIVDSETDELLPPGSKGIVKV 541

Query: 475 RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTI 534
           +G  VM+GY+KN  ATK+ LDEDGWLNTGDIGWIAPHHS GRSR CGGV+VLEGRAKDTI
Sbjct: 542 KGPHVMKGYYKNELATKKVLDEDGWLNTGDIGWIAPHHSVGRSRHCGGVIVLEGRAKDTI 601

Query: 535 VLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHAD 594
           VLSTGENVEP ELEEAA+RS+LI+QIVVIGQDQRR GAIIVP+KEEVL AAKRLSI++A+
Sbjct: 602 VLSTGENVEPTELEEAAMRSTLIQQIVVIGQDQRRLGAIIVPNKEEVLAAAKRLSILNAN 661

Query: 595 ASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 635
            SELSKEK   LL+ E+R WT   SFQIGPI VVDEPFT++
Sbjct: 662 TSELSKEKITGLLHEEIRTWTEGFSFQIGPILVVDEPFTID 702

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439252|ref|XP_002263501.1| PREDICTED: long-chain-fatty-acid--CoA ligase FadD15-like [Vitis vinifera]

 Score =  908 bits (2347), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/581 (74%), Positives = 501/581 (86%)

Query: 55  KLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEEL 114
           +LEQEILDF+EGLR IGVKP+EKL+LF+DNSCRWL+ADQG++A GAINVVRGSRSS EEL
Sbjct: 83  QLEQEILDFSEGLRAIGVKPDEKLALFADNSCRWLIADQGIMAIGAINVVRGSRSSVEEL 142

Query: 115 LHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYD 174
           L IY HSESVALAV+NPE F RIAET CS+AA+RF++LLWG+KS +  ++++ +PVF+Y 
Sbjct: 143 LQIYIHSESVALAVDNPELFGRIAETFCSRAAIRFVVLLWGEKSCLPSEVMDRVPVFNYK 202

Query: 175 EIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI 234
           EIIDLGRE R  F DS+ ARK+Y YE I S+DIAT VYTSGTTGNPKGVMLTH+NLLHQI
Sbjct: 203 EIIDLGRECRSVFLDSHYARKNYIYEAISSNDIATLVYTSGTTGNPKGVMLTHQNLLHQI 262

Query: 235 RSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYM 294
           ++L+DIVPAE GD+FLSMLP WH YERA  YFIF+ GIE +YT V NLK+DL+RYQP Y+
Sbjct: 263 KNLWDIVPAEPGDRFLSMLPSWHAYERASEYFIFTHGIEQVYTTVPNLKEDLRRYQPQYL 322

Query: 295 ISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY 354
           ISVPLVYETLYSGIQKQI TSS  R++VA   IRIS AY   KRIYEG  L ++QKQ SY
Sbjct: 323 ISVPLVYETLYSGIQKQISTSSTVRKLVALTFIRISLAYMELKRIYEGKFLQKSQKQYSY 382

Query: 355 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAI 414
           + ++ DWLWA+II AILWP+H+L +KLVY KI SAIGISKAGVSGGGSLP H+D F+EAI
Sbjct: 383 IASIFDWLWAKIIAAILWPVHMLGKKLVYSKIHSAIGISKAGVSGGGSLPSHVDRFFEAI 442

Query: 415 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV 474
            +KVQ GYGLTE SPV AARRPTCNVLGSVGHPI HTEIKIVD+ET+E+LP GSKGIVKV
Sbjct: 443 DIKVQNGYGLTECSPVTAARRPTCNVLGSVGHPIRHTEIKIVDSETDELLPPGSKGIVKV 502

Query: 475 RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTI 534
           +G  VM+GY+KN  ATK+ LDEDGWLNTGDIGWIAPHHS GRSR CGGV+VLEGRAKDTI
Sbjct: 503 KGPHVMKGYYKNELATKKVLDEDGWLNTGDIGWIAPHHSVGRSRHCGGVIVLEGRAKDTI 562

Query: 535 VLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHAD 594
           VLSTGENVEP ELEEAA+RS+LI+QIVVIGQDQRR GAIIVP+KEEVL AAKRLSI++A+
Sbjct: 563 VLSTGENVEPTELEEAAMRSTLIQQIVVIGQDQRRLGAIIVPNKEEVLAAAKRLSILNAN 622

Query: 595 ASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 635
            SELSKEK   LL+ E+R WT   SFQIGPI VVDEPFT++
Sbjct: 623 TSELSKEKITGLLHEEIRTWTEGFSFQIGPILVVDEPFTID 663

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055821|ref|XP_002298670.1| predicted protein [Populus trichocarpa] gi|222845928|gb|EEE83475.1| predicted protein [Populus trichocarpa]

 Score =  901 bits (2329), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/581 (74%), Positives = 502/581 (86%)

Query: 55  KLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEEL 114
           +LE+EILDF+EGLRVIGVKP+EKL+LF+DNS RWLVADQGM+A GA++VVRGSRSS EEL
Sbjct: 86  QLEEEILDFSEGLRVIGVKPDEKLALFADNSYRWLVADQGMMAMGAVDVVRGSRSSVEEL 145

Query: 115 LHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYD 174
           L IYNHSESVALAV+NPE FNRIAET  S AA RF+ILLWG+KSS+  + +E IP+F+Y 
Sbjct: 146 LQIYNHSESVALAVDNPELFNRIAETFSSNAAPRFVILLWGEKSSLTINAMEGIPIFNYK 205

Query: 175 EIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI 234
           EIIDLGRESRKAF DS DAR+HYKYETI SDDIAT VYTSGTTGNPKGVMLTHKNLLHQI
Sbjct: 206 EIIDLGRESRKAFFDSGDARQHYKYETISSDDIATLVYTSGTTGNPKGVMLTHKNLLHQI 265

Query: 235 RSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYM 294
            + ++IVPA+  D+FLSMLPPWH YERAC YFIF+ G E +YT VRN K DLQ+YQPHY+
Sbjct: 266 NNFWEIVPAQPADRFLSMLPPWHAYERACEYFIFANGAEQVYTTVRNFKVDLQQYQPHYL 325

Query: 295 ISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY 354
           ISVPLV+ETLYSGIQKQI  SS  R+++A   I+IS AY   KRIYEG  LTR+Q + SY
Sbjct: 326 ISVPLVFETLYSGIQKQISKSSTLRKLLAFTFIKISLAYMEMKRIYEGTYLTRSQNEQSY 385

Query: 355 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAI 414
            V+++ WL ARI  AIL P+H+LAEKLVY KIQSAIGI KAGVSGGGSLP H+D F+EAI
Sbjct: 386 FVSILGWLRARIFAAILLPVHMLAEKLVYSKIQSAIGIRKAGVSGGGSLPAHVDKFFEAI 445

Query: 415 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV 474
           GV +  GYG+TESSPV+AAR+ + NVLGSVGHPI HTE KIVDAET + LP GSKGIV+V
Sbjct: 446 GVVLLNGYGMTESSPVLAARQLSNNVLGSVGHPIRHTEFKIVDAETGKSLPYGSKGIVRV 505

Query: 475 RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTI 534
           RG QVM+GY+KNP ATKQA+DEDGWLNTGD+GWIAP+HSRG+S RCGG++VLEGRAKDTI
Sbjct: 506 RGPQVMKGYYKNPLATKQAVDEDGWLNTGDLGWIAPYHSRGKSCRCGGIIVLEGRAKDTI 565

Query: 535 VLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHAD 594
           VLSTGENVEPLELEEAA++SSLI+QIVVIGQDQRR GAI+VP+KEEVL  AK+LSIV AD
Sbjct: 566 VLSTGENVEPLELEEAAMKSSLIQQIVVIGQDQRRLGAIVVPNKEEVLEVAKKLSIVDAD 625

Query: 595 ASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 635
           A+ELSK++  +LL  ELRKWTS+ SFQIGP+ V+DE FT++
Sbjct: 626 ATELSKKQIANLLDKELRKWTSEASFQIGPVLVIDESFTID 666

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512427|ref|XP_003524920.1| PREDICTED: putative acyl-CoA synthetase YngI-like [Glycine max]

 Score =  892 bits (2305), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/582 (71%), Positives = 499/582 (85%)

Query: 54  SKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEE 113
           ++LEQ ILDFAEGLRVIGV+P+EKL+LF+DNSCRWLVADQGM+A+GAINVVRGSRSS EE
Sbjct: 124 TQLEQAILDFAEGLRVIGVRPDEKLALFADNSCRWLVADQGMMASGAINVVRGSRSSVEE 183

Query: 114 LLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSY 173
           LL IYNHSESVAL V+NPE FNR+A T  S+ +MRFIILLWG+K+ +     + +PVF++
Sbjct: 184 LLQIYNHSESVALVVDNPEMFNRVANTFYSRTSMRFIILLWGEKAELVGQENKHVPVFTF 243

Query: 174 DEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQ 233
            E+IDLGR+SR+A S+++DA + Y YE I +D IAT VYTSGTTGNPKGVMLTH+NLLHQ
Sbjct: 244 MEVIDLGRQSRRALSNAHDAGQRYIYEAINTDSIATLVYTSGTTGNPKGVMLTHRNLLHQ 303

Query: 234 IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHY 293
           I++L+DIVPAE GD+FLSMLPPWH YERAC YFIF+ GIE +YT VRNLKDDLQRYQP Y
Sbjct: 304 IKNLWDIVPAEAGDRFLSMLPPWHAYERACEYFIFTCGIEQVYTTVRNLKDDLQRYQPQY 363

Query: 294 MISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS 353
           +ISVPLV+ETLYSGI KQI T S  R++VA   IR S AY  +KRIYEG CLT+N+KQ S
Sbjct: 364 LISVPLVFETLYSGIMKQISTGSVVRKLVALTFIRSSIAYMEYKRIYEGKCLTKNKKQAS 423

Query: 354 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEA 413
           Y  +++DWLWAR I  IL PLH+LA+KLVY KI SAIGISKAG+SGGGSLP  +D F+EA
Sbjct: 424 YAYSMLDWLWARTIATILLPLHILAKKLVYSKIHSAIGISKAGISGGGSLPWEVDKFFEA 483

Query: 414 IGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVK 473
           IGVKVQ GYGLTE+SPVIAARRP CNV+GSVGHPI HTE KIVD+ET+EVLP GSKGI+K
Sbjct: 484 IGVKVQNGYGLTETSPVIAARRPRCNVIGSVGHPIRHTEFKIVDSETDEVLPPGSKGILK 543

Query: 474 VRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDT 533
           VRG QVM+GYFKN  AT QALD DGWLNTGDIGWI PHHS GRSR   GV+V+EGRAKDT
Sbjct: 544 VRGPQVMEGYFKNSLATNQALDGDGWLNTGDIGWIVPHHSTGRSRNSSGVIVVEGRAKDT 603

Query: 534 IVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHA 593
           IVLSTGENVEPLELEEAA+RSS+I+QIVV+GQD+RR GA+IVP+KEEVL  A++LSI+ +
Sbjct: 604 IVLSTGENVEPLELEEAAMRSSIIQQIVVVGQDKRRLGAVIVPNKEEVLKVARKLSIIDS 663

Query: 594 DASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 635
           ++S++S+EK  SL+Y EL+ WTS+  FQIGPI +V+EPFT++
Sbjct: 664 NSSDVSEEKVTSLIYKELKTWTSESPFQIGPILLVNEPFTID 705

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527657|ref|XP_004170826.1| PREDICTED: probable acyl-activating enzyme 16, chloroplastic-like, partial [Cucumis sativus]

 Score =  871 bits (2250), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/581 (69%), Positives = 492/581 (84%)

Query: 55  KLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEEL 114
           +LEQ IL+F+EGLRVIG+KP+EK++LF+DNSCRWLVADQG++  GAINVVRGSRSSSEEL
Sbjct: 64  ELEQSILNFSEGLRVIGIKPDEKIALFADNSCRWLVADQGIMTMGAINVVRGSRSSSEEL 123

Query: 115 LHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYD 174
           L IYNHSESVAL V+NPE FNRI ET   K +MR +ILLWG+KSS+A + V+ I VF Y+
Sbjct: 124 LQIYNHSESVALVVDNPELFNRIVETFHLKTSMRCVILLWGEKSSLANEGVDGITVFDYN 183

Query: 175 EIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI 234
           +I+D+GRESRK    S+DA++ Y YE I SDDIAT VYTSGTTGNPKGVMLTH+NLLHQI
Sbjct: 184 DIMDMGRESRKVMLGSHDAKQCYTYEPINSDDIATLVYTSGTTGNPKGVMLTHRNLLHQI 243

Query: 235 RSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYM 294
           ++L+DIVPA+ GDKFLSMLPPWH YERAC YFIF+ G+E  YT +RNLKDDL+ YQP Y+
Sbjct: 244 KNLWDIVPAKVGDKFLSMLPPWHAYERACEYFIFTFGVEQAYTTIRNLKDDLRHYQPDYL 303

Query: 295 ISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY 354
           ISVPLVYETLYSGIQKQI  SS  R+++  A I +S AY   KRIYEG  LTR+  QP++
Sbjct: 304 ISVPLVYETLYSGIQKQILASSNLRKLIVLAFINVSLAYMELKRIYEGTYLTRSNVQPTH 363

Query: 355 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAI 414
           LV+ +DWL+AR+  +ILWP+H+LA+ +VY K+QSAIGI KAG+SGGGSLP H+DLF+EAI
Sbjct: 364 LVSALDWLFARMTASILWPIHMLAKIIVYSKVQSAIGIWKAGISGGGSLPSHVDLFFEAI 423

Query: 415 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV 474
           G+ VQ GYGLTE SPV+AARRPTCNVLGSVGHPI HTE +IVD ET + LP GS+GIV+V
Sbjct: 424 GITVQNGYGLTECSPVVAARRPTCNVLGSVGHPIRHTEFRIVDMETGDALPPGSRGIVEV 483

Query: 475 RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTI 534
           RG QVM+GY+KN SAT+Q LD++GW ++GDIGWIAPHHSRGRSRRCGGV+VL+GRAKDTI
Sbjct: 484 RGPQVMKGYYKNSSATQQVLDKEGWFSSGDIGWIAPHHSRGRSRRCGGVIVLDGRAKDTI 543

Query: 535 VLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHAD 594
           VL TGENVEP  +EEAA+RS+LI+QIVVIGQDQRR GAI+ P+KEEVL AAK+LS   + 
Sbjct: 544 VLLTGENVEPTVIEEAAMRSTLIQQIVVIGQDQRRLGAIVFPNKEEVLSAAKKLSAEDSS 603

Query: 595 ASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 635
            S++S E   +L+Y E+RKWTS+C FQIGPI +V+EPFT++
Sbjct: 604 TSDVSNETLTNLIYSEVRKWTSECPFQIGPILIVNEPFTID 644

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441378|ref|XP_004138459.1| PREDICTED: probable acyl-activating enzyme 16, chloroplastic-like [Cucumis sativus]

 Score =  870 bits (2249), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/581 (69%), Positives = 492/581 (84%)

Query: 55  KLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEEL 114
           +LEQ IL+F+EGLRVIG+KP+EK++LF+DNSCRWLVADQG++  GAINVVRGSRSSSEEL
Sbjct: 123 ELEQSILNFSEGLRVIGIKPDEKIALFADNSCRWLVADQGIMTMGAINVVRGSRSSSEEL 182

Query: 115 LHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYD 174
           L IYNHSESVAL V+NPE FNRI ET   K +MR +ILLWG+KSS+A + V+ I VF Y+
Sbjct: 183 LQIYNHSESVALVVDNPELFNRIVETFHLKTSMRCVILLWGEKSSLANEGVDGITVFDYN 242

Query: 175 EIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI 234
           +I+D+GRESRK    S+DA++ Y YE I SDDIAT VYTSGTTGNPKGVMLTH+NLLHQI
Sbjct: 243 DIMDMGRESRKVMLGSHDAKQCYTYEPINSDDIATLVYTSGTTGNPKGVMLTHRNLLHQI 302

Query: 235 RSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYM 294
           ++L+DIVPA+ GDKFLSMLPPWH YERAC YFIF+ G+E  YT +RNLKDDL+ YQP Y+
Sbjct: 303 KNLWDIVPAKVGDKFLSMLPPWHAYERACEYFIFTFGVEQAYTTIRNLKDDLRHYQPDYL 362

Query: 295 ISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY 354
           ISVPLVYETLYSGIQKQI  SS  R+++  A I +S AY   KRIYEG  LTR+  QP++
Sbjct: 363 ISVPLVYETLYSGIQKQILASSNLRKLIVLAFINVSLAYMELKRIYEGTYLTRSNVQPTH 422

Query: 355 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAI 414
           LV+ +DWL+AR+  +ILWP+H+LA+ +VY K+QSAIGI KAG+SGGGSLP H+DLF+EAI
Sbjct: 423 LVSALDWLFARMTASILWPIHMLAKIIVYSKVQSAIGIWKAGISGGGSLPSHVDLFFEAI 482

Query: 415 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV 474
           G+ VQ GYGLTE SPV+AARRPTCNVLGSVGHPI HTE +IVD ET + LP GS+GIV+V
Sbjct: 483 GITVQNGYGLTECSPVVAARRPTCNVLGSVGHPIRHTEFRIVDMETGDALPPGSRGIVEV 542

Query: 475 RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTI 534
           RG QVM+GY+KN SAT+Q LD++GW ++GDIGWIAPHHSRGRSRRCGGV+VL+GRAKDTI
Sbjct: 543 RGPQVMKGYYKNSSATQQVLDKEGWFSSGDIGWIAPHHSRGRSRRCGGVIVLDGRAKDTI 602

Query: 535 VLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHAD 594
           VL TGENVEP  +EEAA+RS+LI+QIVVIGQDQRR GAI+ P+KEEVL AAK+LS   + 
Sbjct: 603 VLLTGENVEPTVIEEAAMRSTLIQQIVVIGQDQRRLGAIVFPNKEEVLSAAKKLSAEDSS 662

Query: 595 ASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 635
            S++S E   +L+Y E+RKWTS+C FQIGPI +V+EPFT++
Sbjct: 663 TSDVSNETLTNLIYSEVRKWTSECPFQIGPILIVNEPFTID 703

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22331297|ref|NP_189021.2| AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana] gi|75311239|sp|Q9LK39.1|AAE16_ARATH RecName: Full=Probable acyl-activating enzyme 16, chloroplastic; Flags: Precursor gi|9293952|dbj|BAB01855.1| long-chain-fatty-acid CoA ligase [Arabidopsis thaliana] gi|332643293|gb|AEE76814.1| AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana]

 Score =  870 bits (2247), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/609 (68%), Positives = 500/609 (82%), Gaps = 4/609 (0%)

Query: 29  RNCVDAVATRIRISRRNHRF-RVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCR 87
           R+ V+    R+ +    H     F   +LEQEILDF EGLRV+GVK +EK++LF+DNSCR
Sbjct: 88  RSSVEKYGDRVAVVDPYHDPPSTFTYRQLEQEILDFVEGLRVVGVKADEKIALFADNSCR 147

Query: 88  WLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAM 147
           WLVADQG++ATGA+NVVRGSRSS EELL IY HSESVAL V+NPEFFNRIAE+   KAA 
Sbjct: 148 WLVADQGIMATGAVNVVRGSRSSVEELLQIYCHSESVALVVDNPEFFNRIAESFSYKAAP 207

Query: 148 RFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDI 207
           +F+ILLWG+KSS+        PV+SY+EI   G+E R  F+ SND+ K Y+YE I  DDI
Sbjct: 208 KFVILLWGEKSSLV-TAGRHTPVYSYNEIKKFGQERRAKFARSNDSGK-YEYEYIDPDDI 265

Query: 208 ATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFI 267
           AT +YTSGTTGNPKGVMLTH+NLLHQIR+L D VPAE G++FLSMLP WH YERAC YFI
Sbjct: 266 ATIMYTSGTTGNPKGVMLTHQNLLHQIRNLSDFVPAEAGERFLSMLPSWHAYERACEYFI 325

Query: 268 FSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALI 327
           F+ G+E  YT++R LKDDL+RYQPHY+ISVPLVYETLYSGIQKQI  SS AR+ +A  LI
Sbjct: 326 FTCGVEQKYTSIRFLKDDLKRYQPHYLISVPLVYETLYSGIQKQISASSPARKFLALTLI 385

Query: 328 RISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQ 387
           ++S AYT  KR+YEG CLT+NQK P Y+V+L+DWLWAR++   LWPLH+LAEKLV++KI+
Sbjct: 386 KVSLAYTEMKRVYEGLCLTKNQKPPMYIVSLVDWLWARVVAFFLWPLHMLAEKLVHRKIR 445

Query: 388 SAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHP 447
           S+IGI+KAGVSGGGSLPMH+D F+EAIGV VQ GYGLTE+SPV++ARR  CNVLGSVGHP
Sbjct: 446 SSIGITKAGVSGGGSLPMHVDKFFEAIGVNVQNGYGLTETSPVVSARRLRCNVLGSVGHP 505

Query: 448 INHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW 507
           I  TE KIVD ET  VLP GSKGIVKVRG  VM+GY+KNP ATKQ +D+DGW NTGD+GW
Sbjct: 506 IKDTEFKIVDHETGTVLPPGSKGIVKVRGPPVMKGYYKNPLATKQVIDDDGWFNTGDMGW 565

Query: 508 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ 567
           I P HS GRSR CGGV+VLEGRAKDTIVLSTGENVEPLE+EEAA+RS+LI+QIVVIGQDQ
Sbjct: 566 ITPQHSTGRSRSCGGVIVLEGRAKDTIVLSTGENVEPLEIEEAAMRSNLIQQIVVIGQDQ 625

Query: 568 RRPGAIIVPDKEEVLMAAK-RLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIH 626
           RR GAI++P+KE    AAK ++S V ++ +ELSKE   S++Y ELRKWTS+CSFQ+GP+ 
Sbjct: 626 RRLGAIVIPNKEAAEGAAKQKISPVDSEVNELSKETITSMVYEELRKWTSQCSFQVGPVL 685

Query: 627 VVDEPFTVN 635
           +VDEPFT++
Sbjct: 686 IVDEPFTID 694

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20799733|gb|AAM28629.1|AF503771_1 acyl-CoA synthetase-like protein [Arabidopsis thaliana]

 Score =  869 bits (2245), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/609 (68%), Positives = 500/609 (82%), Gaps = 4/609 (0%)

Query: 29  RNCVDAVATRIRISRRNHRF-RVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCR 87
           R+ V+    R+ +    H     F   +LEQEILDF EGLRV+GVK +EK++LF+DNSCR
Sbjct: 88  RSSVEKYGDRVAVVDPYHDPPSTFTYRQLEQEILDFVEGLRVVGVKADEKIALFADNSCR 147

Query: 88  WLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAM 147
           WLVADQG++ATGA+NVVRGSRSS EELL IY HSESVAL V+NPEFFNRIAE+   KAA 
Sbjct: 148 WLVADQGIMATGAVNVVRGSRSSVEELLQIYCHSESVALVVDNPEFFNRIAESFSYKAAP 207

Query: 148 RFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDI 207
           +F+ILLWG+KSS+        PV+SY+EI   G+E R  F+ SND+ K Y+YE I  DDI
Sbjct: 208 KFVILLWGEKSSLV-TAGRHTPVYSYNEIKKFGQERRAKFARSNDSGK-YEYEYIDPDDI 265

Query: 208 ATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFI 267
           AT +YTSGTTGNPKGVMLTH+NLLHQIR+L D VPAE G++FLSMLP WH YERAC YFI
Sbjct: 266 ATIMYTSGTTGNPKGVMLTHQNLLHQIRNLSDFVPAEAGERFLSMLPSWHAYERACEYFI 325

Query: 268 FSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALI 327
           F+ G+E  YT++R LKDDL+RYQPHY+ISVPLVYETLYSGIQKQI  SS AR+ +A  LI
Sbjct: 326 FTCGVEQKYTSIRFLKDDLKRYQPHYLISVPLVYETLYSGIQKQISASSPARKFLALTLI 385

Query: 328 RISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQ 387
           ++S AYT  KR+YEG CLT+NQK P Y+V+L+DWLWAR++   LWPLH+LAEKLV++KI+
Sbjct: 386 KVSLAYTEMKRVYEGLCLTKNQKPPMYIVSLVDWLWARVVAFFLWPLHMLAEKLVHRKIR 445

Query: 388 SAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHP 447
           S+IGI+KAGVSGGGSLPMH+D F+EAIGV VQ GYGLTE+SPV++ARR  CNVLGSVGHP
Sbjct: 446 SSIGITKAGVSGGGSLPMHVDKFFEAIGVNVQNGYGLTETSPVVSARRLRCNVLGSVGHP 505

Query: 448 INHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW 507
           I  TE KIVD ET  VLP GSKGIVKVRG  VM+GY+KNP ATKQ +D+DGW NTGD+GW
Sbjct: 506 IKDTEFKIVDHETGTVLPPGSKGIVKVRGPPVMKGYYKNPLATKQVIDDDGWFNTGDMGW 565

Query: 508 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ 567
           I P HS GRSR CGGV+VLEGRAKDTIVLSTGENVEPLE+EEAA+RS+LI+QIVVIGQDQ
Sbjct: 566 ITPQHSTGRSRSCGGVIVLEGRAKDTIVLSTGENVEPLEIEEAAMRSNLIQQIVVIGQDQ 625

Query: 568 RRPGAIIVPDKEEVLMAAK-RLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIH 626
           RR GAI++P+KE    AAK ++S V ++ +ELSKE   S++Y ELRKWTS+CSFQ+GP+ 
Sbjct: 626 RRLGAIVIPNKEAAEGAAKQKISPVDSEVNELSKETITSMVYEELRKWTSQCSFQVGPVL 685

Query: 627 VVDEPFTVN 635
           +VDEPFT++
Sbjct: 686 IVDEPFTID 694

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297835432|ref|XP_002885598.1| hypothetical protein ARALYDRAFT_898924 [Arabidopsis lyrata subsp. lyrata] gi|297331438|gb|EFH61857.1| hypothetical protein ARALYDRAFT_898924 [Arabidopsis lyrata subsp. lyrata]

 Score =  866 bits (2237), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/609 (68%), Positives = 501/609 (82%), Gaps = 4/609 (0%)

Query: 29  RNCVDAVATRIRISRRNHRF-RVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCR 87
           R+ V+    R+ +    H     F   +LEQEILDF EGLRV+GVK +EK++LF+DNSCR
Sbjct: 88  RSSVEKYGDRVAVVDPYHDPPSTFTYRQLEQEILDFVEGLRVVGVKADEKIALFADNSCR 147

Query: 88  WLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAM 147
           WLVADQG++ATGA+NVVRGSRSS EELL IY HSESVAL V+NPEFFNRIAE+   KAA 
Sbjct: 148 WLVADQGIMATGAVNVVRGSRSSVEELLQIYCHSESVALVVDNPEFFNRIAESFSCKAAP 207

Query: 148 RFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDI 207
           +F+ILLWG+KSS+    +   PV+SY+EI + G+E R  F+ SNDA K Y+YE I  DDI
Sbjct: 208 KFVILLWGEKSSLVTAGMP-TPVYSYNEIKNFGQERRAKFARSNDAGK-YEYEFIDPDDI 265

Query: 208 ATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFI 267
           AT +YTSGTTGNPKGVMLTH+NLLHQIR+L D VPAE G++FLSMLP WH YERAC YFI
Sbjct: 266 ATIMYTSGTTGNPKGVMLTHQNLLHQIRNLSDFVPAEAGERFLSMLPSWHAYERACEYFI 325

Query: 268 FSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALI 327
           F+ G+E  YT++R LK DL++YQPHY+ISVPLVYETLYSGIQKQI TSS  R+ +A  LI
Sbjct: 326 FTCGVEQKYTSIRFLKGDLKQYQPHYLISVPLVYETLYSGIQKQISTSSPVRKFLALTLI 385

Query: 328 RISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQ 387
           ++S AYT  KRIYEG CLT+NQK P Y+V+L+DWLWAR++  +LWPLH+LAEKLV+KKI+
Sbjct: 386 KVSLAYTEMKRIYEGLCLTKNQKPPLYIVSLVDWLWARVVAFVLWPLHILAEKLVHKKIR 445

Query: 388 SAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHP 447
           S+IGI+KAGVSGGGSLPMH+D F+EAI V VQ GYGLTE+SPV++ARR  CNVLGSVGHP
Sbjct: 446 SSIGITKAGVSGGGSLPMHVDKFFEAISVNVQNGYGLTETSPVVSARRLRCNVLGSVGHP 505

Query: 448 INHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW 507
           I  TE KIVD ET  VLP GSKGIVKVRG  VM+GY+KNP ATKQ +D+DGW NTGD+GW
Sbjct: 506 IKDTEFKIVDHETGTVLPPGSKGIVKVRGPPVMKGYYKNPLATKQVIDDDGWFNTGDMGW 565

Query: 508 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ 567
           I P HS GRSR CGGV+VLEGRAKDTIVLSTGENVEPLE+EEAA+RS+LI+QIVVIGQDQ
Sbjct: 566 ITPQHSTGRSRSCGGVIVLEGRAKDTIVLSTGENVEPLEIEEAAMRSNLIQQIVVIGQDQ 625

Query: 568 RRPGAIIVPDKEEVLMAAK-RLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIH 626
           RR GAI++P+KE    AAK ++S V  + +ELSKE+  S++Y EL+KWTS+CSFQ+GP+ 
Sbjct: 626 RRLGAIVIPNKEAAEGAAKQKISPVDPEVNELSKERITSMVYEELKKWTSQCSFQVGPVL 685

Query: 627 VVDEPFTVN 635
           +VDEPFT++
Sbjct: 686 IVDEPFTID 694

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	641
TAIR|locus:2095173	722	AAE16 "acyl activating enzyme	0.909	0.807	0.670	7.8e-213
TAIR|locus:2129371	727	AAE15 "acyl-activating enzyme	0.887	0.782	0.660	2.3e-206
TIGR_CMR|SPO_1847	628	SPO_1847 "AMP-binding enzyme"	0.443	0.452	0.267	1.6e-37
UNIPROTKB|Q9KP89	601	VC_2484 "Long-chain-fatty-acid	0.355	0.379	0.303	1.6e-37
TIGR_CMR|VC_2484	601	VC_2484 "long-chain-fatty-acid	0.355	0.379	0.303	1.6e-37
UNIPROTKB|F1RSZ3	699	ACSL1 "Uncharacterized protein	0.335	0.307	0.339	2.2e-37
MGI|MGI:102797	699	Acsl1 "acyl-CoA synthetase lon	0.336	0.309	0.320	3e-37
UNIPROTKB|Q0VCZ8	699	ACSL1 "Acyl-CoA synthetase lon	0.335	0.307	0.347	4.8e-37
FB|FBgn0036821	704	CG3961 [Drosophila melanogaste	0.382	0.348	0.303	3.6e-36
UNIPROTKB|B7Z452	698	ACSL1 "Long-chain-fatty-acid--	0.336	0.309	0.323	4.7e-36

TAIR|locus:2095173 AAE16 "acyl activating enzyme 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 2057 (729.2 bits), Expect = 7.8e-213, P = 7.8e-213
 Identities = 393/586 (67%), Positives = 467/586 (79%)

Query:    51 FCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSS 110
             F   +LEQEILDF EGLRV+GVK +EK++LF+DNSCRWLVADQG++ATGA+NVVRGSRSS
Sbjct:   111 FTYRQLEQEILDFVEGLRVVGVKADEKIALFADNSCRWLVADQGIMATGAVNVVRGSRSS 170

Query:   111 SEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPV 170
              EELL IY HSESVAL V+NPEFFNRIAE+   KAA +F+ILLWG+KSS+        PV
Sbjct:   171 VEELLQIYCHSESVALVVDNPEFFNRIAESFSYKAAPKFVILLWGEKSSLVT-AGRHTPV 229

Query:   171 FSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNL 230
             +SY+EI   G+E R  F+ SND+ K Y+YE I  DDIAT +YTSGTTGNPKGVMLTH+NL
Sbjct:   230 YSYNEIKKFGQERRAKFARSNDSGK-YEYEYIDPDDIATIMYTSGTTGNPKGVMLTHQNL 288

Query:   231 LHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQ 290
             LHQIR+L D VPAE G++FLSMLP WH YERAC YFIF+ G+E  YT++R LKDDL+RYQ
Sbjct:   289 LHQIRNLSDFVPAEAGERFLSMLPSWHAYERACEYFIFTCGVEQKYTSIRFLKDDLKRYQ 348

Query:   291 PHYMISVPLVYETLYSGIQKQIFTSSXXXXXXXXXXXXXSFAYTAFKRIYEGFCLTRNQK 350
             PHY+ISVPLVYETLYSGIQKQI  SS             S AYT  KR+YEG CLT+NQK
Sbjct:   349 PHYLISVPLVYETLYSGIQKQISASSPARKFLALTLIKVSLAYTEMKRVYEGLCLTKNQK 408

Query:   351 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLF 410
              P Y+V+L+DWLWAR++   LWPLH+LAEKLV++KI+S+IGI+KAGVSGGGSLPMH+D F
Sbjct:   409 PPMYIVSLVDWLWARVVAFFLWPLHMLAEKLVHRKIRSSIGITKAGVSGGGSLPMHVDKF 468

Query:   411 YEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKG 470
             +EAIGV VQ GYGLTE+SPV++ARR  CNVLGSVGHPI  TE KIVD ET  VLP GSKG
Sbjct:   469 FEAIGVNVQNGYGLTETSPVVSARRLRCNVLGSVGHPIKDTEFKIVDHETGTVLPPGSKG 528

Query:   471 IVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRA 530
             IVKVRG  VM+GY+KNP ATKQ +D+DGW NTGD+GWI P H          V+VLEGRA
Sbjct:   529 IVKVRGPPVMKGYYKNPLATKQVIDDDGWFNTGDMGWITPQHSTGRSRSCGGVIVLEGRA 588

Query:   531 KDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAK-RLS 589
             KDTIVLSTGENVEP        RS+LI+QIVVIGQDQRR GAI++P+KE    AAK ++S
Sbjct:   589 KDTIVLSTGENVEPLEIEEAAMRSNLIQQIVVIGQDQRRLGAIVIPNKEAAEGAAKQKIS 648

Query:   590 IVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 635
              V ++ +ELSKE   S++Y ELRKWTS+CSFQ+GP+ +VDEPFT++
Sbjct:   649 PVDSEVNELSKETITSMVYEELRKWTSQCSFQVGPVLIVDEPFTID 694

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2129371 AAE15 "acyl-activating enzyme 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 1996 (707.7 bits), Expect = 2.3e-206, P = 2.3e-206
 Identities = 384/581 (66%), Positives = 459/581 (79%)

Query:    55 KLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEEL 114
             +LEQEILDFAEGLRV+GVK +EK++LF+DNSCRWLV+DQG++ATGA+NVVRGSRSS EEL
Sbjct:   131 QLEQEILDFAEGLRVLGVKADEKIALFADNSCRWLVSDQGIMATGAVNVVRGSRSSVEEL 190

Query:   115 LHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYD 174
             L IY HSESVA+ V+NPEFFNRIAE+  SKA++RF+ILLWG+KSS+    ++ IPV+SY 
Sbjct:   191 LQIYRHSESVAIVVDNPEFFNRIAESFTSKASLRFLILLWGEKSSLVTQGMQ-IPVYSYA 249

Query:   175 EIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI 234
             EII+ G+ESR   S SND R  Y+ + I SDD A  +YTSGTTGNPKGVMLTH+NLLHQI
Sbjct:   250 EIINQGQESRAKLSASNDTRS-YRNQFIDSDDTAAIMYTSGTTGNPKGVMLTHRNLLHQI 308

Query:   235 RSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYM 294
             + L   VPA+ GDKFLSMLP WH YERA  YFIF+ G+E MYT++R LKDDL+RYQP+Y+
Sbjct:   309 KHLSKYVPAQAGDKFLSMLPSWHAYERASEYFIFTCGVEQMYTSIRYLKDDLKRYQPNYI 368

Query:   295 ISVPLVYETLYSGIQKQIFTSSXXXXXXXXXXXXXSFAYTAFKRIYEGFCLTRNQKQPSY 354
             +SVPLVYETLYSGIQKQI  SS             S AY   KRIYEG CLT+ QK P Y
Sbjct:   369 VSVPLVYETLYSGIQKQISASSAGRKFLALTLIKVSMAYMEMKRIYEGMCLTKEQKPPMY 428

Query:   355 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAI 414
             +VA +DWLWAR+I A+LWPLH+LA+KL+YKKI S+IGISKAG+SGGGSLP+H+D F+EAI
Sbjct:   429 IVAFVDWLWARVIAALLWPLHMLAKKLIYKKIHSSIGISKAGISGGGSLPIHVDKFFEAI 488

Query:   415 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV 474
             GV +Q GYGLTE+SPV+ AR  +CNVLGS GHP++ TE KIVD ETN VLP GSKGI+KV
Sbjct:   489 GVILQNGYGLTETSPVVCARTLSCNVLGSAGHPMHGTEFKIVDPETNNVLPPGSKGIIKV 548

Query:   475 RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTI 534
             RG QVM+GY+KNPS TKQ L+E GW NTGD GWIAPHH          V+VLEGRAKDTI
Sbjct:   549 RGPQVMKGYYKNPSTTKQVLNESGWFNTGDTGWIAPHHSKGRSRHCGGVIVLEGRAKDTI 608

Query:   535 VLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHAD 594
             VLSTGENVEP        RS +I QIVVIGQD+RR GAII+P+KEE    A+R+      
Sbjct:   609 VLSTGENVEPLEIEEAAMRSRVIEQIVVIGQDRRRLGAIIIPNKEE----AQRVD----- 659

Query:   595 ASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 635
               E SKE   SL+Y ELRKWTS+CSFQ+GP+ +VD+PFT++
Sbjct:   660 -PETSKETLKSLVYQELRKWTSECSFQVGPVLIVDDPFTID 699

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0008922 "long-chain fatty acid [acyl-carrier-protein

GO:0009536 "plastid" evidence=IDA

GO:0030497 "fatty acid elongation" evidence=IDA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

TIGR_CMR|SPO_1847 SPO_1847 "AMP-binding enzyme" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 245 (91.3 bits), Expect = 1.6e-37, Sum P(2) = 1.6e-37
 Identities = 81/303 (26%), Positives = 136/303 (44%)

Query:    67 LRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVAL 126
             LR +G+K  E +S+ S++   W   D G+ A G I     +  S+ +L ++ N S+S  L
Sbjct:    78 LRKLGLKRGEVVSILSEDRKEWAWFDMGIQAVGGIASGVYTTDSANQLKYLINDSDSRFL 137

Query:   127 AVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKA 186
               EN E  ++  +       +  +I+L   +     D+         D + ++GRE+ K 
Sbjct:   138 IAENEEQLDKYLQIEGEVPGLLNVIIL---EDEGLHDL-NHPRCMMIDRLYEIGREAEKE 193

Query:   187 FSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENG 246
                + +A    +   I  +D+A  +YTSGTTG PKG MLTH+N++  I +    +P E  
Sbjct:   194 EPGAFEA----EIAQIRPEDVALLIYTSGTTGMPKGAMLTHENIMAGIEAGAHRLPTEET 249

Query:   247 DKFLSMLPPWHVYERACG-YFIFSRGIELMYT-AVRNLKDDLQRYQPHYMISVPLVYETL 304
             D+ L  LP  H+ ER    YF  +    + +  +   +  +LQ   P    +VP V+E +
Sbjct:   250 DEQLCFLPLCHILERDVSIYFPLASKCTVNFAESPETVFANLQEVSPATFTAVPRVWEKI 309

Query:   305 YSGIQKQIFTSSXXXXXXXXXXXXXSFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWA 364
             YS    Q+   +             +      KR      L  N+  P+ + A   WLW 
Sbjct:   310 YS----QVLILAQEATPSGRAAFGMALR-AGMKRAQY---LVENKPVPAGVAANF-WLWD 360

Query:   365 RII 367
             R++
Sbjct:   361 RLV 363

GO:0008152 "metabolic process" evidence=ISS

GO:0016208 "AMP binding" evidence=ISS

UNIPROTKB|Q9KP89 VC_2484 "Long-chain-fatty-acid--CoA ligase, putative" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 247 (92.0 bits), Expect = 1.6e-37, Sum P(2) = 1.6e-37
 Identities = 79/260 (30%), Positives = 123/260 (47%)

Query:   375 HLLAEKLVYKKIQSAIGISKAGVS--GGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIA 432
             H  A+KLV  K+++ +G  +      GG  L   I  F+ AIG+ V++GYG+TE++  ++
Sbjct:   325 HQFADKLVLSKLRALLG-GRINFMPCGGAKLDETIGRFFHAIGINVKLGYGMTETTATVS 383

Query:   433 ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ 492
                  C    S+G  +   ++KI   E NE+L         VRG  VM+GY+K    T +
Sbjct:   384 CWDDHCFNPDSIGLSMPGAQVKI--GENNEIL---------VRGPMVMRGYYKLDKETTE 432

Query:   493 ALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXX 552
             + DE G+L TGD G I  +            L +  R K+ +  S G+ + P        
Sbjct:   433 SFDEQGFLKTGDAGHIDENGN----------LFITDRIKELMKTSGGKYIAPQVIEGAIG 482

Query:   553 RSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSK--------EKTI 604
             +   I QI VI   ++   A+IVP  + +   AK L+I + D  EL K        EK +
Sbjct:   483 KDHFIEQIAVIADTRKFVSALIVPCFDSLEEYAKELNIKYHDRLELIKHSQVLEMFEKRV 542

Query:   605 SLLYGELRKWTSKCSFQIGP 624
             + L  EL K+     F++ P
Sbjct:   543 NELQKELAKFEQVKKFRLLP 562

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISS

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0006631 "fatty acid metabolic process" evidence=ISS

TIGR_CMR|VC_2484 VC_2484 "long-chain-fatty-acid--CoA ligase, putative" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 247 (92.0 bits), Expect = 1.6e-37, Sum P(2) = 1.6e-37
 Identities = 79/260 (30%), Positives = 123/260 (47%)

Query:   375 HLLAEKLVYKKIQSAIGISKAGVS--GGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIA 432
             H  A+KLV  K+++ +G  +      GG  L   I  F+ AIG+ V++GYG+TE++  ++
Sbjct:   325 HQFADKLVLSKLRALLG-GRINFMPCGGAKLDETIGRFFHAIGINVKLGYGMTETTATVS 383

Query:   433 ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ 492
                  C    S+G  +   ++KI   E NE+L         VRG  VM+GY+K    T +
Sbjct:   384 CWDDHCFNPDSIGLSMPGAQVKI--GENNEIL---------VRGPMVMRGYYKLDKETTE 432

Query:   493 ALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXX 552
             + DE G+L TGD G I  +            L +  R K+ +  S G+ + P        
Sbjct:   433 SFDEQGFLKTGDAGHIDENGN----------LFITDRIKELMKTSGGKYIAPQVIEGAIG 482

Query:   553 RSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSK--------EKTI 604
             +   I QI VI   ++   A+IVP  + +   AK L+I + D  EL K        EK +
Sbjct:   483 KDHFIEQIAVIADTRKFVSALIVPCFDSLEEYAKELNIKYHDRLELIKHSQVLEMFEKRV 542

Query:   605 SLLYGELRKWTSKCSFQIGP 624
             + L  EL K+     F++ P
Sbjct:   543 NELQKELAKFEQVKKFRLLP 562

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0006631 "fatty acid metabolic process" evidence=ISS

UNIPROTKB|F1RSZ3 ACSL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 262 (97.3 bits), Expect = 2.2e-37, Sum P(2) = 2.2e-37
 Identities = 79/233 (33%), Positives = 116/233 (49%)

Query:   377 LAEKLVYKKIQSAIGISKAGVSGGGSLPMH---IDLFYEAIGVKVQVGYGLTESSPVIAA 433
             L +KL++ KIQS++G  K  +   G+ P+    +     A+G +   GYG TE +   + 
Sbjct:   412 LWDKLIFHKIQSSLG-GKVRLMVTGAAPVSATVLTFLRAALGCQFYEGYGQTECTAGCSL 470

Query:   434 RRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQA 493
               P     G VG P+  + IK+VD E    L A  +G V V+G  V QGY K+P+ T +A
Sbjct:   471 TVPGDWTAGHVGAPMPCSLIKLVDVEEMNYLAAKGEGEVCVKGPNVFQGYLKDPAKTAEA 530

Query:   494 LDEDGWLNTGDIG-WIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXX 552
             LD+DGWL+TGDIG W+ P+            L +  R K    L+ GE + P        
Sbjct:   531 LDKDGWLHTGDIGKWL-PN----------GTLKIIDRKKHIFKLAQGEYIAPEKIENIYL 579

Query:   553 RSSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTI 604
             RS  + Q+ V G+  Q    AI+VPD E +   A++   V     EL + K +
Sbjct:   580 RSEPVAQVFVHGESLQAFLIAIVVPDVETLGHWAQKRGFV-GSFEELCRNKDV 631

GO:0071902 "positive regulation of protein serine/threonine kinase activity" evidence=IEA

GO:0044539 "long-chain fatty acid import" evidence=IEA

GO:0033211 "adiponectin-mediated signaling pathway" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

MGI|MGI:102797 Acsl1 "acyl-CoA synthetase long-chain family member 1" [Mus musculus (taxid:10090)]

 Score = 259 (96.2 bits), Expect = 3.0e-37, Sum P(2) = 3.0e-37
 Identities = 75/234 (32%), Positives = 116/234 (49%)

Query:   377 LAEKLVYKKIQSAIGISKAGVSGGGSLPMH---IDLFYEAIGVKVQVGYGLTESSPVIAA 433
             L +KL++ KIQS++G  K  +   G+ P+    +     A+G +   GYG TE +     
Sbjct:   412 LWDKLIFHKIQSSLG-GKVRLMITGAAPVSATVLTFLRTALGCQFYEGYGQTECTAGCCL 470

Query:   434 RRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQA 493
               P     G VG P+    +K+VD E    L +  +G V V+G+ V +GY K+P+ T +A
Sbjct:   471 SLPGDWTAGHVGAPMPCNYVKLVDVEEMNYLASKGEGEVCVKGANVFKGYLKDPARTAEA 530

Query:   494 LDEDGWLNTGDIG-WIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXX 552
             LD+DGWL+TGDIG W+ P+            L +  R K    L+ GE + P        
Sbjct:   531 LDKDGWLHTGDIGKWL-PN----------GTLKIIDRKKHIFKLAQGEYIAPEKIENIYL 579

Query:   553 RSSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTIS 605
             RS  + Q+ V G+  Q    A++VPD E +   A++  +      EL + K I+
Sbjct:   580 RSEAVAQVFVHGESLQAFLIAVVVPDVESLPSWAQKRGL-QGSFEELCRNKDIN 632

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISO

GO:0003824 "catalytic activity" evidence=IEA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005741 "mitochondrial outer membrane" evidence=ISO

GO:0005777 "peroxisome" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=ISO

GO:0006641 "triglyceride metabolic process" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=ISO

GO:0010033 "response to organic substance" evidence=ISO

GO:0015908 "fatty acid transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0033211 "adiponectin-mediated signaling pathway" evidence=IMP

GO:0042178 "xenobiotic catabolic process" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0043758 "acetate-CoA ligase (ADP-forming) activity" evidence=IEA

GO:0044539 "long-chain fatty acid import" evidence=ISO

GO:0071902 "positive regulation of protein serine/threonine kinase activity" evidence=IMP

UNIPROTKB|Q0VCZ8 ACSL1 "Acyl-CoA synthetase long-chain family member 1" [Bos taurus (taxid:9913)]

 Score = 260 (96.6 bits), Expect = 4.8e-37, Sum P(2) = 4.8e-37
 Identities = 81/233 (34%), Positives = 115/233 (49%)

Query:   377 LAEKLVYKKIQSAIGISKAGVSGGGSLPMH---IDLFYEAIGVKVQVGYGLTESSPVIAA 433
             L +KL++ KIQS++G  K  +   G+ P+    +     A+G +   GYG TE +     
Sbjct:   412 LWDKLIFHKIQSSLG-GKVRLMITGAAPVSATVLTFLRAALGCQFYEGYGQTECTAGCCL 470

Query:   434 RRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQA 493
                     G VG P+  + IK+VD E    L A  +G V V+GS V QGY K+P  T +A
Sbjct:   471 TVAGDWTAGHVGPPMPCSIIKLVDVEEMNYLAAKGEGEVCVKGSNVFQGYLKDPVKTAEA 530

Query:   494 LDEDGWLNTGDIG-WIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXX 552
             LD+DGWL+TGDIG W+ P+            L +  R K    L+ GE + P        
Sbjct:   531 LDKDGWLHTGDIGKWL-PN----------GTLKIIDRKKHIFKLAQGEYIAPEKIENIYQ 579

Query:   553 RSSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTI 604
             RS  I Q+ V G+  Q    AI+VPD E +   A++  IV     EL + K +
Sbjct:   580 RSEPIAQVFVHGESLQAFLIAIVVPDVETLGTWAQKRGIV-GSFEELCRNKDV 631

GO:0071902 "positive regulation of protein serine/threonine kinase activity" evidence=IEA

GO:0044539 "long-chain fatty acid import" evidence=IEA

GO:0033211 "adiponectin-mediated signaling pathway" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

FB|FBgn0036821 CG3961 [Drosophila melanogaster (taxid:7227)]

 Score = 257 (95.5 bits), Expect = 3.6e-36, Sum P(2) = 3.6e-36
 Identities = 80/264 (30%), Positives = 123/264 (46%)

Query:   379 EKLVYKKIQSAIGIS-KAGVSGGGSLPMHIDLFYE-AIGVKVQVGYGLTESSPVIAARRP 436
             +KLV+KK+  A G + +  V G   L  ++  F   A+G  V  GYG TE +  I     
Sbjct:   420 DKLVFKKVHQAFGGNLRLMVVGSAPLAGNVLTFMRCALGCLVLEGYGQTECTGAITLTVQ 479

Query:   437 TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE 496
               +V   VG P++   +K+VD    E     + G V VRGS V  GY+K+P  T +A+D 
Sbjct:   480 GDHVPNHVGPPVSCNAVKLVDVPEMEYFANQNTGEVCVRGSNVFHGYYKDPEKTAEAIDS 539

Query:   497 DGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSL 556
             +GW +TGD+G   P+            L +  R K    LS GE + P         S  
Sbjct:   540 EGWHHTGDVGMWLPN----------GTLRIIDRRKHIFKLSQGEYIVPEKIENIYTLSQY 589

Query:   557 IRQIVVIGQDQRRPG-AIIVPDKEEVLMAAKRLSIVHADASELSKEKTIS-LLYGELRKW 614
             + Q+ V G+  +    A++VPD + VL      + V    S L   K +  L+  ++  W
Sbjct:   590 VNQVYVYGESLKSCIIAVVVPDTD-VLKQWATENNVRGTLSVLCNNKNVKELIMNDMLNW 648

Query:   615 TSKC---SF-QIGPIHVVDEPFTV 634
               +    SF Q+  I++  +PF+V
Sbjct:   649 GKQSGLKSFEQVKDIYLHPDPFSV 672

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

UNIPROTKB|B7Z452 ACSL1 "Long-chain-fatty-acid--CoA ligase 1" [Homo sapiens (taxid:9606)]

 Score = 254 (94.5 bits), Expect = 4.7e-36, Sum P(2) = 4.7e-36
 Identities = 75/232 (32%), Positives = 113/232 (48%)

Query:   377 LAEKLVYKKIQSAIGIS-KAGVSGGGSLPMHIDLFYEA-IGVKVQVGYGLTESSPVIAAR 434
             L ++L++ K+QS++G   +  V+G   +   +  F  A +G +   GYG TE +      
Sbjct:   411 LWDRLIFHKVQSSLGGRVRLMVTGAAPVSATVLTFLRAALGCQFYEGYGQTECTAGCCLT 470

Query:   435 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL 494
              P     G VG P+    IK+VD E    + A  +G V V+G  V QGY K+P+ T +AL
Sbjct:   471 MPGDWTAGHVGAPMPCNLIKLVDVEEMNYMAAEGEGEVCVKGPNVFQGYLKDPAKTAEAL 530

Query:   495 DEDGWLNTGDIG-WIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXR 553
             D+DGWL+TGDIG W+ P+            L +  R K    L+ GE + P        R
Sbjct:   531 DKDGWLHTGDIGKWL-PN----------GTLKIIDRKKHIFKLAQGEYIAPEKIENIYMR 579

Query:   554 SSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTI 604
             S  + Q+ V G+  Q    AI+VPD E +   A++         EL + K +
Sbjct:   580 SEPVAQVFVHGESLQAFLIAIVVPDVETLCSWAQKRGF-EGSFEELCRNKDV 630

GO:0016874 "ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LK39	AAE16_ARATH	6, ., 2, ., 1, ., -	0.6830	0.9438	0.8379	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	641
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	1e-150
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	1e-120
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	6e-84
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	2e-59
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	4e-55
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	2e-44
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	5e-43
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	2e-40
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	2e-40
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	2e-39
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	8e-39
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	3e-36
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	2e-35
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	7e-35
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	1e-33
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	2e-33
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	3e-33
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	9e-33
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	4e-32
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	3e-31
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	6e-31
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	9e-31
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	6e-30
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	1e-29
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	7e-29
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	1e-28
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	1e-28
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	4e-28
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	2e-27
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	5e-27
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	6e-27
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	1e-26
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	3e-26
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	1e-25
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	1e-25
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	2e-24
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	1e-23
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	6e-23
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	9e-23
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	1e-22
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	3e-22
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	5e-22
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	5e-22
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	7e-22
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	9e-22
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	1e-21
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	1e-21
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	2e-21
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	7e-21
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	1e-20
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	2e-20
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	2e-20
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	3e-20
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	3e-20
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	6e-20
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	9e-20
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	1e-19
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	4e-19
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	9e-19
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	4e-18
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	4e-18
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	6e-18
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	2e-17
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	5e-17
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	1e-16
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	1e-16
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	1e-16
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	1e-16
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	2e-16
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	2e-16
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	3e-16
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	3e-16
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	5e-16
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	5e-16
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	1e-15
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	1e-15
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	1e-15
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	2e-15
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	3e-15
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	3e-15
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	3e-15
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	5e-15
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	7e-15
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	1e-14
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	1e-14
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	1e-14
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	1e-14
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	2e-14
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	3e-14
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	3e-14
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	4e-14
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	4e-14
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	5e-14
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	5e-14
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	2e-13
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	3e-13
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	5e-13
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	5e-13
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	8e-13
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	1e-12
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	2e-12
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	2e-12
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	2e-12
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	3e-12
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	3e-12
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	4e-12
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	4e-12
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	5e-12
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	7e-12
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	9e-12
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	1e-11
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	2e-11
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	2e-11
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	2e-11
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	2e-11
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	3e-11
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	3e-11
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	3e-11
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	6e-11
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	8e-11
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	8e-11
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	1e-10
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	1e-10
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	3e-10
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	3e-10
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	4e-10
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	6e-10
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	1e-09
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	1e-09
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	1e-09
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	1e-09
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	1e-09
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	2e-09
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	2e-09
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	3e-09
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	3e-09
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	3e-09
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	5e-09
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	5e-09
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	6e-09
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	7e-09
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	1e-08
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	1e-08
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	1e-08
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	1e-08
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	2e-08
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	2e-08
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	3e-08
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	3e-08
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	3e-08
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	3e-08
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	4e-08
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	4e-08
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	5e-08
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	6e-08
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	7e-08
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	7e-08
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	9e-08
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	9e-08
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	1e-07
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	2e-07
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	2e-07
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	2e-07
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	2e-07
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	2e-07
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	2e-07
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	3e-07
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	3e-07
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	4e-07
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	4e-07
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	4e-07
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	4e-07
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	6e-07
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	6e-07
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	7e-07
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	9e-07
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	1e-06
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	1e-06
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	1e-06
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	1e-06
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	2e-06
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	2e-06
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	2e-06
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	3e-06
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	3e-06
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	3e-06
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	3e-06
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	4e-06
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	5e-06
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	6e-06
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	6e-06
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	7e-06
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	7e-06
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	8e-06
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	8e-06
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	9e-06
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	1e-05
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	2e-05
cd05938	535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	2e-05
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	2e-05
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	2e-05
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	3e-05
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	3e-05
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	3e-05
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	3e-05
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	4e-05
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	4e-05
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	4e-05
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	5e-05
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	6e-05
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	6e-05
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	6e-05
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	8e-05
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	1e-04
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	1e-04
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	1e-04
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	1e-04
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	1e-04
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	2e-04
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	2e-04
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-04
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	3e-04
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	3e-04
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	3e-04
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	3e-04
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	3e-04
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	4e-04
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	4e-04
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	4e-04
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	4e-04
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	6e-04
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	8e-04
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	8e-04
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	9e-04
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	0.001
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	0.001
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	0.002
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	0.002
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	0.002
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	0.002
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	0.002
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	0.003
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	0.003
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	0.003
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	0.004
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	0.004
PRK06060	705	PRK06060, PRK06060, acyl-CoA synthetase; Validated	0.004

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  448 bits (1155), Expect = e-150
 Identities = 184/588 (31%), Positives = 291/588 (49%), Gaps = 66/588 (11%)

Query: 54  SKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEE 113
            +L + +   A GL  +G+   +++++F+ N   W +AD  +LA GA++V   S S+ E+
Sbjct: 49  RELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYSTSTPEQ 108

Query: 114 LLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSY 173
           L +I N SES  + VEN E  + +   L     +  +I        +  + VE   +   
Sbjct: 109 LAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLI----VIIDLVREAVEAKAL-VL 163

Query: 174 DEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQ 233
           +   D G       S   + R          DD+AT +YTSGTTG PKGVMLTH+NLL Q
Sbjct: 164 EVFPDEGISLFLIDSAGLEGRIAPP----KPDDLATIIYTSGTTGTPKGVMLTHRNLLAQ 219

Query: 234 IRSLYDIVPA-ENGDKFLSMLPPWHVYERACGYFIF--SRGIELMYTAVRNLKDDLQRYQ 290
           +  + +++P    GD+ LS LP  H++ERA    +        L     R L +DL+  +
Sbjct: 220 VAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFKEDPRTLLEDLKEVR 279

Query: 291 PHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK 350
           P  MI VP V+E +Y GI +++  + A RR + R  +++++   +               
Sbjct: 280 PTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKIS--------------- 324

Query: 351 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGIS-KAGVSGGGSLPMHIDL 409
                          ++        L+A++LV++KI+ A+G   +  +SGG  L   +  
Sbjct: 325 -------------RALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLH 371

Query: 410 FYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSK 469
           F+ ++G+ +  GYGLTE+S V++   P   VLG+VG P+   E+KI D            
Sbjct: 372 FFRSLGIPILEGYGLTETSAVVSVNPPDRFVLGTVGKPLPGIEVKIAD-----------D 420

Query: 470 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR 529
           G + VRG  VM+GY+KNP AT +A  EDGW  TGD+G +             G LV+ GR
Sbjct: 421 GEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDE----------DGYLVITGR 470

Query: 530 AKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLS 589
            K+ I LS G+N+ P  +E    +S LI QI V+G D++   A+IVPD + +   A+ L+
Sbjct: 471 KKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVGDDKKFLVALIVPDFDALEKWAESLN 530

Query: 590 IV-HADASELSK-EKTISLLYGELRK-WTSKCSF-QIGPIHVVDEPFT 633
            V  A   EL++  K + L+   + K       F QI    ++ + FT
Sbjct: 531 KVISASREELARDPKLLKLILPRVNKGNKRLFGFEQIKKFVLLPKEFT 578

Length = 613

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  364 bits (937), Expect = e-120
 Identities = 141/439 (32%), Positives = 207/439 (47%), Gaps = 91/439 (20%)

Query: 203 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERA 262
             DD+AT +YTSGTTGNPKGVMLTH+NLL Q  +L +++P   GD+ LS LP  HV+E+ 
Sbjct: 86  KPDDLATLIYTSGTTGNPKGVMLTHRNLLAQAAALLEVIPLSPGDRVLSFLPLAHVFEQR 145

Query: 263 CG-YFIFSRGIELMYTA-VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARR 320
            G Y   S G  + +      L +DL+  +P    +VP V+E +Y+GI+ +         
Sbjct: 146 LGEYLPLSSGARVNFAESPETLLEDLREVRPTVFFAVPRVWEKIYAGIEAK--------- 196

Query: 321 VVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEK 380
            VA A           KR                   L  W       A+          
Sbjct: 197 -VAAA--------GPLKR------------------KLFRW-------ALG--------- 213

Query: 381 LVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNV 440
                     G  +  VSGG  LP  +  F+ A+G+ +  GYGLTE+S V    RP    
Sbjct: 214 ---------GGRLRFAVSGGAPLPPEVLEFFRALGIPILEGYGLTETSGVATVNRPGDIR 264

Query: 441 LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWL 500
           +G+VG P+   E++I +            G + VRG  VM+GY+KNP AT +ALDEDGWL
Sbjct: 265 IGTVGKPLPGVEVRIAE-----------DGEILVRGPNVMKGYYKNPEATAEALDEDGWL 313

Query: 501 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQI 560
           +TGDIG +             G LV+  R KD IV + G+N+ P  +E A   S  I Q 
Sbjct: 314 HTGDIGRLD----------EDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQA 363

Query: 561 VVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGE-----LRKWT 615
           VV+G D+    A+IV D E +   A++  +     ++L+++  +  L  +       +  
Sbjct: 364 VVVGDDRPYLTALIVLDPEALEKWAEQHGLPFTTYADLAEDPEVRALIRKEVEEANARLA 423

Query: 616 SKCSFQIGPIHVVDEPFTV 634
                QI    ++ + F++
Sbjct: 424 R--VEQIKKFVLLPKEFSI 440

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  273 bits (700), Expect = 6e-84
 Identities = 165/599 (27%), Positives = 255/599 (42%), Gaps = 114/599 (19%)

Query: 54  SKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEE 113
            ++E+  L+   GLR +G+KP +K+ +F++N   W++ +Q   +   + V        E 
Sbjct: 9   KEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPLYDTLGEEA 68

Query: 114 LLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSY 173
           + +I N +E   +                                       + + V+S+
Sbjct: 69  IEYILNETEISIV-------------------------------------FCDAVKVYSF 91

Query: 174 DEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQ 233
           +E+ +LG++++   +                +D+AT +YTSGTTGNPKGVMLTH N++  
Sbjct: 92  EELEELGKKNKVPPTPPK------------PEDLATIMYTSGTTGNPKGVMLTHGNIVAG 139

Query: 234 IRSLYDIVPAENG--DKFLSMLPPWHVYERACGYFIFSRGIELMYTA--VRNLKDDLQRY 289
           +  +  IVP   G  D ++S LP  H++ER         G  + Y +   R LK D++  
Sbjct: 140 VAGINKIVPEFIGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDTRGLKGDIKEL 199

Query: 290 QPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQ 349
           +P   + VP V + +Y GI  ++      +R +       +FAY  +K       L R  
Sbjct: 200 KPTVFVGVPRVLDRIYKGILAKVNAKGGLKRTL------FNFAY-NYKL----AALRRGH 248

Query: 350 KQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAG-----VSGGGSLP 404
              S                       L +KLV+KKI++A+G    G     +SGG  L 
Sbjct: 249 GYAS----------------------PLWDKLVFKKIKAALG----GRVRLMLSGGAPLS 282

Query: 405 MHIDLFYEAI-GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEV 463
                F     G  V  GYGLTE+        P     G VG P+   EIK+VD      
Sbjct: 283 PDTQEFLRVALGCPVLQGYGLTETCAGGTLSDPGDTTTGHVGPPLPCCEIKLVDVPEMGY 342

Query: 464 LPAGS--KGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCG 521
                  +G + +RG  V +GY+KNP  T +A DEDGW +TGDIG   P           
Sbjct: 343 FAKDDPPRGEICIRGPNVFKGYYKNPEKTAEAFDEDGWFHTGDIGEWLP----------D 392

Query: 522 GVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQRRPGAIIVPDKEE 580
           G L +  R K+   LS GE V   +LE     S L+ QI V G   +    AI+VPD++ 
Sbjct: 393 GTLKIIDRKKNLFKLSQGEYVALEKLENIYKSSPLVDQICVYGDSLKSFLVAIVVPDEDV 452

Query: 581 VLMAAKRLSIVHADASEL-SKEKTISLLYGELRKWTSKC---SF-QIGPIHVVDEPFTV 634
           +   A        D  EL + +K    +  +L +   +     F  +  IH+  EPFT 
Sbjct: 453 LEKWAAENGGGGGDFEELCNNKKLKKAILKDLNEIGKENGLKGFEIVKAIHLTPEPFTP 511

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score =  207 bits (528), Expect = 2e-59
 Identities = 146/622 (23%), Positives = 250/622 (40%), Gaps = 160/622 (25%)

Query: 45  NHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVV 104
             ++  +  +++  +    A  L+ +G++P +++++ S N   W++AD  +   G ++V 
Sbjct: 1   GGQWHEYTWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVP 60

Query: 105 RGSRSSSEELLHIYNHSESVALAV---ENPEFFNRIAETLCSKAAMRFIILLWGKKSSVA 161
                ++E + ++  HS++ AL V   ++ +             AM+          +  
Sbjct: 61  LYPTLTAETIRYVLEHSDAKALFVGKLDDWD-------------AMK----------AGV 97

Query: 162 PDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETI-------------GSDDIA 208
           P+ +  I +F Y  + D                 HYK++ +               +D+A
Sbjct: 98  PEGLPTIILFPYSTLKD-----------------HYKWDDLLAATEPLQGRPLPEPEDLA 140

Query: 209 TYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERA------ 262
           T VYTSGTTG PKGVML+        +   +I+     D+ LS LP  H+ ER       
Sbjct: 141 TIVYTSGTTGQPKGVMLSFGAFAFAAQGTIEIIGLTPNDRLLSYLPLAHIAERVIVEGGS 200

Query: 263 --CGYFI-FSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAAR 319
              G  + F   ++   T       DLQR +P    SVP     L++  Q+ I       
Sbjct: 201 LYSGAEVFFVESLD---TFAA----DLQRARPTVFFSVP----RLWTKFQQGILAKLPPE 249

Query: 320 RVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAE 379
           +                        L    K P                        +  
Sbjct: 250 K------------------------LNLLLKIP------------------------ILS 261

Query: 380 KLVYKKIQSAIGISKAGVSGGGSLPMHIDL--FYEAIGVKVQVGYGLTESSPVIAARRPT 437
            LV KKI   +G+ +A ++G G+ PM   L  +Y  +G+ +  GYG+TE+        P 
Sbjct: 262 SLVKKKILKGLGLDQARLAGSGAAPMPPALIAWYRKLGLPICEGYGMTENFAYSTLNYPG 321

Query: 438 CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED 497
              +G+VG PI   E+KI  +E  E+L         +R   +M GY+K+P  T +A  ED
Sbjct: 322 DRRIGTVGKPIPGVELKI--SEDGEIL---------IRSPGLMSGYYKDPEKTAEAFTED 370

Query: 498 GWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLI 557
           GWL+TGD G I             G L + GR K+    S G+ V P  +E     +  +
Sbjct: 371 GWLHTGDKGEIDED----------GFLKITGRVKELFKTSKGKYVAPAPIENLLSANPHV 420

Query: 558 RQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSK 617
            Q+ V+G    +P A++V  +    +  + +        E S ++T++ +  EL      
Sbjct: 421 EQVCVVGSGLPQPVALVVLSEAADPLEREEV--------EESLQQTLAKVNSELESHE-- 470

Query: 618 CSFQIGPIHVVDEPFTVNFLCL 639
              ++  + VV E +TV    L
Sbjct: 471 ---RLSALVVVKEAWTVENGLL 489

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score =  198 bits (505), Expect = 4e-55
 Identities = 167/604 (27%), Positives = 256/604 (42%), Gaps = 113/604 (18%)

Query: 66  GLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVA 125
           GL   G+     + L+  N   WL+ D    A   ++V        + +  I NH+E  A
Sbjct: 94  GLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAA 153

Query: 126 LAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIP------VFSYDEIIDL 179
           +    P+  N +   L    ++R I+++ G     A + +  +P      + +Y +++  
Sbjct: 154 IFC-VPQTLNTLLSCLSEIPSVRLIVVVGG-----ADEPLPSLPSGTGVEIVTYSKLLAQ 207

Query: 180 GRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD 239
           GR S + F                 +D+AT  YTSGTTG PKGV+LTH NL+  +     
Sbjct: 208 GRSSPQPFRPPK------------PEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSL 255

Query: 240 IVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLK--DDLQRYQPHYMISV 297
                  D  +S LP  H+YER     +   G+ + +    NLK  DDL   +P    SV
Sbjct: 256 STKFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSV 315

Query: 298 PLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA 357
           P +Y  +Y GI   +  S      +   L     AY A K+  E      N K PS    
Sbjct: 316 PRLYNRIYDGITNAVKESG----GLKERLFNA--AYNAKKQALE------NGKNPS---- 359

Query: 358 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL--FYE-AI 414
                        +W      ++LV+ KI++ +G  +      G+ P+  D+  F     
Sbjct: 360 ------------PMW------DRLVFNKIKAKLG-GRVRFMSSGASPLSPDVMEFLRICF 400

Query: 415 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAE----TNEVLPAGSKG 470
           G +V  GYG+TE+S VI+      N+ G VG P    E+K+VD      T+E  P   +G
Sbjct: 401 GGRVLEGYGMTETSCVISGMDEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPY-PRG 459

Query: 471 IVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRA 530
            + VRG  + +GY+K+   T++ +DEDGWL+TGDIG   P          GG L +  R 
Sbjct: 460 EICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLP----------GGRLKIIDRK 509

Query: 531 KDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG--AIIVPDKEEVLM--AAK 586
           K+   L+ GE + P ++E    +   + Q  V G D       A++V D  EVL   AA 
Sbjct: 510 KNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYG-DSLNSSLVAVVVVD-PEVLKAWAAS 567

Query: 587 R----------------LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDE 630
                             + V AD   + +E        +LR +          + +V E
Sbjct: 568 EGIKYEDLKQLCNDPRVRAAVLADMDAVGRE-------AQLRGFE-----FAKAVTLVPE 615

Query: 631 PFTV 634
           PFTV
Sbjct: 616 PFTV 619

Length = 651

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score =  168 bits (426), Expect = 2e-44
 Identities = 152/549 (27%), Positives = 255/549 (46%), Gaps = 80/549 (14%)

Query: 58  QEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHI 117
           +E+L     LR  G +P  ++ ++  N  +W+VA +   A   I V          + +I
Sbjct: 84  EEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYI 143

Query: 118 YNHSESVALAVENPEFFNRIAETL---CSKAAMRFIILLWGKKSSVAPDIVEEIPV--FS 172
            +H+E   + V++     +I E L   C  A     I+ +   +    D   +I V  +S
Sbjct: 144 VDHAEIDFVFVQD----KKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYS 199

Query: 173 YDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLH 232
           + + + +G+E+    S++N  +           DI T +YTSGT+G+PKGV+LTH+ +  
Sbjct: 200 WIDFLHMGKENP---SETNPPK---------PLDICTIMYTSGTSGDPKGVVLTHEAVAT 247

Query: 233 QIRSLYDIVPAENGDK------FLSMLPPWHVYERACGYFIFSRGIELMYTA--VRNLKD 284
            +R + D+   +  DK      +LS LP  H+ +R    + F +G  + Y    +  L+D
Sbjct: 248 FVRGV-DLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRD 306

Query: 285 DLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFC 344
           DL   +P  +  VP V+E ++ GIQK +   +  RR++  AL +   A+    R Y    
Sbjct: 307 DLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAW--MNRGY---- 360

Query: 345 LTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGIS-KAGVSGGGSL 403
              + K+ S                   P   +A+ L ++K+++ +G   +  +SGG  L
Sbjct: 361 ---SHKKAS-------------------P---MADFLAFRKVKAKLGGRLRLLISGGAPL 395

Query: 404 PMHIDLFYEAIGVKVQV-GYGLTES-SPVIAARRPTCNVLGSVGHPINHTEIKIVDAETN 461
              I+ F         V GYGLTE+  P          +LG+VG P  + E+++ +    
Sbjct: 396 STEIEEFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEM 455

Query: 462 EVLPAG--SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRR 519
              P G   +G + VRG  +  GY+KNP  T++ + +DGW +TGDIG I P+        
Sbjct: 456 GYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVM-KDGWFHTGDIGEILPN-------- 506

Query: 520 CGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG--AIIVPD 577
             GVL +  R K+ I LS GE V    LE    ++ ++  I V G D  +    A++VP+
Sbjct: 507 --GVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYG-DSFKSMLVAVVVPN 563

Query: 578 KEEVLMAAK 586
           +E     AK
Sbjct: 564 EENTNKWAK 572

Length = 660

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score =  164 bits (416), Expect = 5e-43
 Identities = 145/547 (26%), Positives = 238/547 (43%), Gaps = 91/547 (16%)

Query: 58  QEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHI 117
              +     +R  GV P ++  ++  N   W++A +   + G   V       +  +  I
Sbjct: 85  DAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFI 144

Query: 118 YNHSE-SVALAVENPEFFNRIAETL-CSKAAMRFI--ILLWGKKSSVAPDIVEEIPV--F 171
            NH+E S+A   E+     +I+  L C       +  I+ +G  SS   +  EE+ V  F
Sbjct: 145 INHAEVSIAFVQES-----KISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCF 199

Query: 172 SYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLL 231
           S++E   +G        D     K          DI T +YTSGTTG PKGV+LT++ ++
Sbjct: 200 SWEEFSLMGSL------DCELPPKQ-------KTDICTIMYTSGTTGEPKGVILTNRAII 246

Query: 232 HQIRS------LYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY--TAVRNLK 283
            ++ S      + D V  E  D + S LP  HVY++    +  S+G  + +    +R L 
Sbjct: 247 AEVLSTDHLLKVTDRVATEE-DSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLM 305

Query: 284 DDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGF 343
           +D+Q  +P     VP VY+ +Y+GI ++I +    R+ +        FAY  +K      
Sbjct: 306 EDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKL------FDFAYN-YKLGNLRK 358

Query: 344 CLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAI-GISKAGVSGGGS 402
            L + +  P                          ++LV+ KI+  + G  +  +SG   
Sbjct: 359 GLKQEEASP------------------------RLDRLVFDKIKEGLGGRVRLLLSGAAP 394

Query: 403 LPMHIDLFYEAIGVKVQV-GYGLTES-SPVIAARRPTCNVLGSVGHPINHTEIKIV---- 456
           LP H++ F       V   GYGLTES      +     +++G+VG P+   E ++     
Sbjct: 395 LPRHVEEFLRVTSCSVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPE 454

Query: 457 ---DAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHS 513
              DA ++  +P   +G + +RG+ +  GY K    T++ L  DGW +TGDIG   P+  
Sbjct: 455 MGYDALSD--VP---RGEICLRGNTLFSGYHKRQDLTEEVL-IDGWFHTGDIGEWQPN-- 506

Query: 514 RGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD-QRRPGA 572
                   G + +  R K+   LS GE V    LE    R  LI  I V G   +    A
Sbjct: 507 --------GAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSFESFLVA 558

Query: 573 IIVPDKE 579
           ++VPD++
Sbjct: 559 VVVPDRQ 565

Length = 660

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score =  156 bits (395), Expect = 2e-40
 Identities = 118/503 (23%), Positives = 210/503 (41%), Gaps = 82/503 (16%)

Query: 84  NSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCS 143
           NS  W +A  G +  G I V   + +S E   ++   SE+  L V+N +   +I      
Sbjct: 42  NSPEWFIAAVGAIFAGGIAVGIYTTNSPEACQYVAETSEANILVVDNAKQLQKILAIQDQ 101

Query: 144 KAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIG 203
              ++ II          P+      ++S+ E ++LGR          D +     E+  
Sbjct: 102 LPHLKAIIQYREPLKEKEPN------LYSWKEFMELGR-------SIPDEQLDAIIESQK 148

Query: 204 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL---YDIVPAENGDKFLSMLPPWHVYE 260
            +   T +YTSGTTG PKGVML+H N+    ++     D+      +  +S LP  H+  
Sbjct: 149 PNQCCTLIYTSGTTGMPKGVMLSHDNITWTAKAAVKHMDLRT-VGQESVVSYLPLSHIAA 207

Query: 261 R-----------ACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQ 309
           +            C YF  ++   L  T V+ L++     +P   + VP V+E +   ++
Sbjct: 208 QILDIWLPISVGGCVYF--AQPDALKGTLVKTLRE----VRPTAFMGVPRVWEKIQERMK 261

Query: 310 KQIFTSSAARRVVARALIRISF-AYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIIC 368
                S+  +R +A     +                +      P                
Sbjct: 262 AVGAKSTGLKRKIASWAKGVGLETNLK--------LMGGESPPPMC-------------- 299

Query: 369 AILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL--FYEAIGVKVQVGYGLTE 426
                   LA+KLV+KK++ A+G+ +      G+ P+  +   F+ ++ + +   YG++E
Sbjct: 300 ------FRLAKKLVFKKVRKALGLDRCQKFFTGAAPISRETLEFFLSLNIPIMELYGMSE 353

Query: 427 SSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKN 486
           +S       P    L S G  +   E KI + + + +      G + + G  V  GY   
Sbjct: 354 TSGPHTVSNPQNYRLLSCGKALPGCETKIHNPDADGI------GEICIWGRHVFMGYLNM 407

Query: 487 PSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLE 546
              T++A+DEDGWL++GD+G++             G L + GR K+ I+ + GENV P+ 
Sbjct: 408 EEKTEEAIDEDGWLHSGDLGFLDDD----------GFLYITGRIKELIITAGGENVPPVP 457

Query: 547 LEEAA-LRSSLIRQIVVIGQDQR 568
           +EEA      +I   +++G  ++
Sbjct: 458 IEEAVKKELPIISNAMLVGDKRK 480

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score =  156 bits (397), Expect = 2e-40
 Identities = 157/581 (27%), Positives = 253/581 (43%), Gaps = 85/581 (14%)

Query: 62  DFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEE-LLHIYNH 120
           +FA GL  +G   EE++++F+D    WL+A QG      I VV    S  EE L H  N 
Sbjct: 118 NFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQN-ITVVTIYASLGEEALCHSLNE 176

Query: 121 SESVALAVENPEFFNRIAETLCSKAAMRFIILL--WGKKSSVAPDIVEEIPVFSYDEIID 178
           +E   +  ++ +   ++ +       ++ +I +   G  S  +        V S+ E+  
Sbjct: 177 TEVTTVICDSKQL-KKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEK 235

Query: 179 LGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY 238
           LG+E+     D +             +DIA  +YTSG+TG PKGVM+TH N++  +  + 
Sbjct: 236 LGKENP---VDPDLPSP---------NDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVM 283

Query: 239 DIVPA-ENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKD-----------DL 286
            +VP     D +L+ LP  H+ E A    + + G  + Y +   L D           D 
Sbjct: 284 TVVPKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDA 343

Query: 287 QRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLT 346
              +P  M +VP + + +  G++K++     A+  +A+ L  I     A+KR        
Sbjct: 344 SALKPTLMTAVPAILDRVRDGVRKKV----DAKGGLAKKLFDI-----AYKR-------- 386

Query: 347 RNQKQPSYLVALID--WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGV-SGGGSL 403
                    +A I+  W  A  +  +LW      + LV+KKI++ +G     + SGG  L
Sbjct: 387 --------RLAAIEGSWFGAWGLEKLLW------DALVFKKIRAVLGGRIRFMLSGGAPL 432

Query: 404 PMHIDLFYE-AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNE 462
                 F    +G  +  GYGLTE+             +G VG P+    +K+V  E   
Sbjct: 433 SGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDTSVGRVGPPLPCCYVKLVSWEEGG 492

Query: 463 VLPAGS---KGIVKVRGSQVMQGYFKNPSATKQA--LDEDG--WLNTGDIGWIAPHHSRG 515
            L +     +G + + G  V  GYFKN   T +   +DE G  W  TGDIG   P     
Sbjct: 493 YLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPD---- 548

Query: 516 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG--AI 573
                 G L +  R KD + L  GE V  L   EAAL  S     +++  D       A+
Sbjct: 549 ------GCLEIIDRKKDIVKLQHGEYVS-LGKVEAALSVSPYVDNIMVHADPFHSYCVAL 601

Query: 574 IVPDKEEVLMAAKRLSIVHADASEL-SKEKTISLLYGELRK 613
           +VP ++ +   AK+  I +++ +EL  KE+ +  +   L K
Sbjct: 602 VVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSK 642

Length = 696

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  147 bits (374), Expect = 2e-39
 Identities = 82/256 (32%), Positives = 121/256 (47%), Gaps = 51/256 (19%)

Query: 394 KAGVSGGGSLPM-HIDLFYEAIGVK-VQVGYGLTESSPVIAARRPTCNV---LGSVGHPI 448
           + G+SGG  +P   +    E   +  +  GYG+TE+S V              G+VG P+
Sbjct: 120 RTGISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPL 179

Query: 449 NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 508
              E+KIVD +  EV P G  G + VRG  VM+GY+ +P AT +A+D DGWL+TGD+G++
Sbjct: 180 PGVEVKIVDPDGGEV-PPGEVGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLGYM 238

Query: 509 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR 568
                        G L + GR KD I +  GEN+ P E+EEA L    + +  V+G    
Sbjct: 239 DED----------GYLRIVGRIKDMI-IRGGENIYPAEIEEALLTHPAVAEAAVVG---- 283

Query: 569 RPGAIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGP-- 624
                 VPD+   EV+ A   L       + L++E        EL  +   C  ++    
Sbjct: 284 ------VPDERLGEVVAAFVVL----KPGATLTEE--------ELIAF---CRGRLARFK 322

Query: 625 ----IHVVDE-PFTVN 635
               +  VDE P T +
Sbjct: 323 VPRYVRFVDELPRTAS 338

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score =  152 bits (384), Expect = 8e-39
 Identities = 150/598 (25%), Positives = 252/598 (42%), Gaps = 86/598 (14%)

Query: 60  ILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYN 119
           ++     LR +GVK E K  ++  NS  W+++ +   A G   V       +  +  I +
Sbjct: 89  VIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIIS 148

Query: 120 HSE-SVALAVEN--PEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEE-----IPVF 171
           HSE S+    E    E F        S   M+ ++   G    V+ +  EE     + ++
Sbjct: 149 HSEVSIVFVEEKKISELFKTCPN---STEYMKTVVSFGG----VSREQKEEAETFGLVIY 201

Query: 172 SYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLL 231
           ++DE + LG              K Y        DI T +YTSGTTG+PKGVM+++++++
Sbjct: 202 AWDEFLKLGEG------------KQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIV 249

Query: 232 HQIRSLYDIVPAENG-----DKFLSMLPPWHVYERACGYFIFSRG--IELMYTAVRNLKD 284
             I  +  ++ + N      D +LS LP  H+++R         G  I      V+ L +
Sbjct: 250 TLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIE 309

Query: 285 DLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFC 344
           DL   +P    +VP V + +YSG+QK++      ++ V  +     F             
Sbjct: 310 DLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNM---------- 359

Query: 345 LTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGIS-KAGVSGGGSL 403
               +K  S++ A                   L +KLV+ K++  +G + +  +SG   L
Sbjct: 360 ----KKGQSHVEA-----------------SPLCDKLVFNKVKQGLGGNVRIILSGAAPL 398

Query: 404 PMHIDLFYEAIG-VKVQVGYGLTESSPVIAARRP-TCNVLGSVGHPINHTEIKI--VDAE 459
             H++ F   +    V  GYGLTES        P   ++LG+VG P+ + +I++  V   
Sbjct: 399 ASHVESFLRVVACCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEM 458

Query: 460 TNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRR 519
             + L +  +G + +RG  +  GY+K    TK+ L  DGWL+TGD+G   P+        
Sbjct: 459 EYDALASTPRGEICIRGKTLFSGYYKREDLTKEVLI-DGWLHTGDVGEWQPN-------- 509

Query: 520 CGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE 579
             G + +  R K+   LS GE V    +E        +  + V G         I    +
Sbjct: 510 --GSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFESFLVAIANPNQ 567

Query: 580 EVLMAAKRLSIVHADASELSK-EKTISLLYGELRKWTSKCSFQ----IGPIHVVDEPF 632
           ++L      + V  D + L + EK    + GEL K   +   +    I  IH+   PF
Sbjct: 568 QILERWAAENGVSGDYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPF 625

Length = 666

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  142 bits (360), Expect = 3e-36
 Identities = 69/202 (34%), Positives = 97/202 (48%), Gaps = 20/202 (9%)

Query: 394 KAGVSGGGSLPMHIDLFYEAIGVKVQV--GYGLTESSPVIAA--RRPTCNVLGSVGHPIN 449
           +  +SGG  LP  +   +E     + +  GYGLTE+SPV+            GSVG P+ 
Sbjct: 294 RLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLP 353

Query: 450 HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 509
             E++IVD +  EVLP G  G + VRG  VM+GY+  P AT +A DEDGWL TGD+G++ 
Sbjct: 354 GVEVRIVDPDGGEVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVD 412

Query: 510 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD--- 566
                       G L + GR KD I+   GEN+ P E+E        + +  V+G     
Sbjct: 413 ED----------GYLYIVGRLKDLIISG-GENIYPEEIEAVLAEHPAVAEAAVVGVPDER 461

Query: 567 -QRRPGAIIVPDKEEVLMAAKR 587
              R  A++V            
Sbjct: 462 WGERVVAVVVLKPGGDAELTAE 483

Length = 534

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  138 bits (349), Expect = 2e-35
 Identities = 66/272 (24%), Positives = 110/272 (40%), Gaps = 28/272 (10%)

Query: 56  LEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELL 115
           L++     A  LR +GV P +++++   NS  W+VA   +L  GA  V       +E L 
Sbjct: 5   LDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPAERLA 64

Query: 116 HIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDE 175
           +I   SE+  L  +  E   ++ E L     +  +I++      +     E +   S + 
Sbjct: 65  YILEDSEAKVLITD-DELLPKLLEVLLKLLVLLALIIVGDDGEGLDLLDDELLAGASAEP 123

Query: 176 IIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR 235
                                     +  DD+A  +YTSGTTG PKGVMLTH+NLL    
Sbjct: 124 PA----------------------PPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAA 161

Query: 236 SLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELM-----YTAVRNLKDDLQRYQ 290
            L +      GD+ L +LP          +     G  L+           L D +++Y+
Sbjct: 162 GLAERFGLTPGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYK 221

Query: 291 PHYMISVPLVYETLYSGIQKQIFTSSAARRVV 322
              +  VP +   L    +++ +  S+ R V+
Sbjct: 222 VTVLYGVPTLLRLLLKAPEEKKYDLSSLRLVL 253

Length = 412

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  137 bits (348), Expect = 7e-35
 Identities = 79/227 (34%), Positives = 108/227 (47%), Gaps = 49/227 (21%)

Query: 397 VSGGGSLPM-HIDLFYEAIGVKVQVGYGLTESSPVIAA------RRPTCNVLGSVGHPIN 449
           +SGG  LP+   + F E  G  +  GYGLTE+SPV         R+P     GS+G P+ 
Sbjct: 248 ISGGAPLPVEVAERFEEKTGAPLVEGYGLTETSPVTTVNPLDGERKP-----GSIGLPLP 302

Query: 450 HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 509
            TE+KIVD E NE+ P G  G + VRG QVM+GY+  P  T + L  DGWL TGDIG++ 
Sbjct: 303 GTEVKIVDDEGNEL-PPGEVGELVVRGPQVMKGYWNRPEETAEVLT-DGWLRTGDIGYMD 360

Query: 510 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR 569
                       G   +  R KD I +  G NV P E+EE       + +  V+G     
Sbjct: 361 ED----------GYFYIVDRKKDMI-IVGGFNVYPREIEEVLYSHPAVLEAAVVG----- 404

Query: 570 PGAIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKW 614
                VPD    E + A     +V  + + L++E        EL  +
Sbjct: 405 -----VPDPYRGEAVKAF----VVLKEGASLTEE--------ELIAF 434

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  133 bits (336), Expect = 1e-33
 Identities = 56/172 (32%), Positives = 79/172 (45%), Gaps = 18/172 (10%)

Query: 397 VSGGGSLPMH-IDLFYEAIG-VKVQVGYGLTESSPVIAARRPTCN--VLGSVGHPINHTE 452
           +SGG  LP   +    E  G V +  GYG TE++ V  A  P       GS+G P+   E
Sbjct: 253 LSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPEVKPGSIGRPLPGVE 312

Query: 453 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLN--TGDIGWIAP 510
           +K++D E   V P G  G + +RG  V +GY  +P  T +   EDGW    TGD+G    
Sbjct: 313 VKVLDEEGEPV-PPGEVGELCIRGPGVARGYLNDPELTAERFVEDGWGMYRTGDLGRWDE 371

Query: 511 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVV 562
                      G L + GR  D + +  GE +EP E+E   L    + +  V
Sbjct: 372 D----------GYLEILGRKDDQVKIR-GERIEPGEIEAVLLEHPGVAEAAV 412

Length = 412

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  130 bits (329), Expect = 2e-33
 Identities = 72/238 (30%), Positives = 108/238 (45%), Gaps = 37/238 (15%)

Query: 394 KAGVSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVIAARRPT-CNVLGSVGHPINHT 451
           +  +SGG  L    ++ F E  G  +  GYGLTE+S V +    +     G+VG P+   
Sbjct: 119 RLLISGGEPLSPELLERFEERPGAPILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGV 178

Query: 452 EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 511
           E+++VD E    LP G  G + VRG  VM+GY+ NP  T  A  EDGW  TGD+G++   
Sbjct: 179 EVRVVDEEGKP-LPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYLDEE 237

Query: 512 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG 571
                     G L + GR+KD I    GENV P E+E   L+   + +  V+G       
Sbjct: 238 ----------GYLYITGRSKDLIK-VGGENVYPAEVESVLLQHPAVAEAAVVG------- 279

Query: 572 AIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVD 629
            +   D+ E ++A     +V    ++   E        EL+        ++ P  V  
Sbjct: 280 -VPDEDRGERIVAF----VVLRPGADALAE--------ELKAH---LRERLAPYKVPR 321

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score =  135 bits (342), Expect = 3e-33
 Identities = 118/509 (23%), Positives = 211/509 (41%), Gaps = 114/509 (22%)

Query: 54  SKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEE 113
           ++L + I++F  GL  +G+     ++++ +    WL +  G+ +   +     +    + 
Sbjct: 125 AELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDA 184

Query: 114 LLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIV-------- 165
           L +    +E  A+              +C+   +  ++ L          I+        
Sbjct: 185 LAYALRETECKAI--------------VCNGKNVPNLLRLMKSGGMPNTTIIYLDSLPAS 230

Query: 166 ---EEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGS-DDIATYVYTSGTTGNPK 221
              E   + ++ +++  G            A  H+      + DD+A  +YTSGTTG+PK
Sbjct: 231 VDTEGCRLVAWTDVVAKGHS----------AGSHHPLNIPENNDDLALIMYTSGTTGDPK 280

Query: 222 GVMLTHKNLLHQIRSLYD-----IVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY 276
           GVM TH +L   I +L D     I P E  + + S LP  H+ E        +RG  + +
Sbjct: 281 GVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGF 340

Query: 277 TAVRNLKD-------DLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRI 329
            + R L D       DL  ++P ++I VP +++T+   ++ ++    + +R V       
Sbjct: 341 GSPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRV------- 393

Query: 330 SFAYTAFKRIYEGFCLTRNQKQPSYLVALID------WLWARIICAILWPLHLLAEKLVY 383
                 F   Y+           S L AL +      W                  + V+
Sbjct: 394 ------FDHAYQ-----------SRLRALKEGKDTPYW-----------------NEKVF 419

Query: 384 KKIQSAIGIS-KAGVSGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVIAARRP---TC 438
              ++ +G   +A +SGGG L      F   + G+ +Q G+GLTE+      +R      
Sbjct: 420 SAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFGMVIQ-GWGLTETVCCGGIQRTGDLEP 478

Query: 439 NVLGSVGHPINHTEIKIVDAE----TNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL 494
           N   +VG  +   E+K++D E    T+   P   +G + +RG  + +GY+K    T++ L
Sbjct: 479 N---AVGQLLKGVEMKLLDTEEYKHTDTPEP---RGEILLRGPFLFKGYYKQEELTREVL 532

Query: 495 DEDGWLNTGDIGWIAPHHSRGRSRRCGGV 523
           DEDGW +TGD+G IA +   G  R  G V
Sbjct: 533 DEDGWFHTGDVGSIAAN---GTLRIIGRV 558

Length = 700

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  128 bits (325), Expect = 9e-33
 Identities = 79/250 (31%), Positives = 112/250 (44%), Gaps = 53/250 (21%)

Query: 394 KAGVSGGGSLPMHIDL---FYEAIGVKVQVGYGLTESSPVIAARRPTCNV--LGSVGHPI 448
           +  + G    PM  +L     E  G     GYG+TE+ P      P   +  LGSVG P+
Sbjct: 118 RLIIYGAA--PMPAELKRAMIEWFGPVFVQGYGMTETGPTTTLLSPEDWLRKLGSVGRPV 175

Query: 449 NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 508
              E++IVD +  E+ P G  G + VRG  VM GY+  P AT +AL  DGWL+TGD+G++
Sbjct: 176 PGVEVRIVDEDGREL-PPGEVGEIVVRGPAVMAGYWNRPEATAEAL-RDGWLHTGDLGYL 233

Query: 509 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR 568
                        G L +  R KD I+ S GEN+ P E+E   L    +  + VIG    
Sbjct: 234 DED----------GYLYIVDRKKDMII-SGGENIYPAEVENVLLAHPAVADVAVIG---- 278

Query: 569 RPGAIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGP-- 624
                 VPD+E  E ++A     +V    + L  E        EL  +   C  ++    
Sbjct: 279 ------VPDEEWGEAVVAV----VVLRPGATLDAE--------ELIAF---CRERLAGYK 317

Query: 625 ----IHVVDE 630
               +  VDE
Sbjct: 318 VPKSVEFVDE 327

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score =  132 bits (333), Expect = 4e-32
 Identities = 114/408 (27%), Positives = 171/408 (41%), Gaps = 65/408 (15%)

Query: 187 FSD-SNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD--IVPA 243
           F D + +   +YK +    D I + VYTSGT+G PKGVML++KNL + +  L    I   
Sbjct: 285 FDDMTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKK 344

Query: 244 ENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA--VRNLKDDLQRYQPHYMISVPLVY 301
            N    LS LP  H+YER   Y  F  G  +   +  +     D+   + + +  VP V+
Sbjct: 345 YNPKTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGNILAGVPKVF 404

Query: 302 ETLYSGIQKQIFTSSAARRVVARALI--RISFAYTAFKRIYEGFCLTRNQKQPSYLVALI 359
             +Y+ I  +I      +R + + ++  R S     F +  EG  +T             
Sbjct: 405 NRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKFLEG--ITH------------ 450

Query: 360 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGIS-KAGVSGGGSL-PMHIDLFYEAIGVK 417
                                 +  KI+  +  + +  ++GGG L P   +     + V 
Sbjct: 451 ----------------------ISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVN 488

Query: 418 VQVGYGLTESS-PVIAARRPTCNVLGSVGHPIN-HTEIKIVDAET---NEVLPAGSKGIV 472
              GYGLTE++ P+        N   S+G PI+ +T+ K+   ET    + LP   KG +
Sbjct: 489 YYQGYGLTETTGPIFVQHADDNNTE-SIGGPISPNTKYKVRTWETYKATDTLP---KGEL 544

Query: 473 KVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKD 532
            ++   +  GYF     TK A  EDG+  TGDI  I  +          G L    R+K 
Sbjct: 545 LIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKN----------GSLTFLDRSKG 594

Query: 533 TIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR-PGAIIVPDKE 579
            + LS GE +E   L     + S I   VV G D    P AII  DK 
Sbjct: 595 LVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSMDGPLAIISVDKY 642

Length = 746

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  127 bits (322), Expect = 3e-31
 Identities = 85/271 (31%), Positives = 125/271 (46%), Gaps = 56/271 (20%)

Query: 376 LLAEKLVYKKIQSAIGISKAGVSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVIAAR 434
           LL     Y    S++   +  + GG +LP   +  F E  G+ +  GYG+TE+SPV++  
Sbjct: 269 LLKAPRAYFVDFSSL---RLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVL 325

Query: 435 RPTCNVLG------SVGHPINHTEIKIVDAETNEVLP-AGSKGIVKVRGSQVMQGYFKNP 487
            P   + G      S G P+   E +IVD + +E+ P  G  G + VRG  +MQGY+  P
Sbjct: 326 PPEDQLPGQWTKRRSAGRPLPGVEARIVDDDGDELPPDGGEVGEIIVRGPWLMQGYWNRP 385

Query: 488 SATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLEL 547
            AT + +D  GWL+TGD+G+I             G L +  R KD I+ S GEN+ P EL
Sbjct: 386 EATAETID-GGWLHTGDVGYIDED----------GYLYITDRIKDVII-SGGENIYPREL 433

Query: 548 EEAALRSSLIRQIVVIGQ-DQR---RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKT 603
           E+A      + ++ VIG  D++   RP A++V      L A                   
Sbjct: 434 EDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLDAK------------------ 475

Query: 604 ISLLYGELRKWTSKC--SFQIGP--IHVVDE 630
                 ELR +       F++ P  I  VDE
Sbjct: 476 ------ELRAFLRGRLAKFKL-PKRIAFVDE 499

Length = 521

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score =  127 bits (321), Expect = 6e-31
 Identities = 75/229 (32%), Positives = 112/229 (48%), Gaps = 48/229 (20%)

Query: 418 VQVGYGLTESSPVIAARRPTCNV---LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV 474
           V + YG+TE+SPV    R    +   + +VG  + H E+KIVD ET E +P G +G +  
Sbjct: 344 VTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCT 403

Query: 475 RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTI 534
           RG  VM+GY+ +P  T +A+D DGW++TGD+  +             G + + GR KD I
Sbjct: 404 RGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEE----------GYVNIVGRIKDMI 453

Query: 535 VLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE--EVLMAAKRLSIVH 592
           +   GEN+ P E+EE       I+ + V+G          VPD++  E + A   L    
Sbjct: 454 I-RGGENIYPREIEEFLYTHPKIQDVQVVG----------VPDEKYGEEVCAWIIL---R 499

Query: 593 ADASELSKEKTISLLYGELRKWTSKCSFQIG----P--IHVVDE-PFTV 634
             A  L++E        ++R +   C  +I     P  I  VDE P TV
Sbjct: 500 PGA-TLTEE--------DVRDF---CRGKIAHYKIPRYIRFVDEFPMTV 536

Length = 559

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  124 bits (314), Expect = 9e-31
 Identities = 56/173 (32%), Positives = 86/173 (49%), Gaps = 27/173 (15%)

Query: 415 GVKVQVGYGLTESSPVIAARRP--TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIV 472
           G+ +   YG+TE++  +A  +P      LGSVG P+   E++IV+ +  E+L        
Sbjct: 213 GIPLYPTYGMTETASQVATLKPDDFLAKLGSVGKPLPGRELRIVNPQDGEIL-------- 264

Query: 473 KVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKD 532
            VRG  +  GY      T   LDEDGW +TGD+G++    + G        L + GR  D
Sbjct: 265 -VRGPSLFLGYLPQGGLT-PPLDEDGWFHTGDLGYL---DAEGY-------LYVLGRRDD 312

Query: 533 TIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEV 581
            I+ S GEN+ P E+E   L+   + +  V+G        RP A +VP+ + V
Sbjct: 313 LII-SGGENIYPEEIEAVLLQHPAVEEAAVVGVPDDEWGQRPVAFVVPNDDPV 364

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  123 bits (311), Expect = 6e-30
 Identities = 77/215 (35%), Positives = 100/215 (46%), Gaps = 31/215 (14%)

Query: 397 VSGGGSLPM-HIDLFYEAI-GVKVQVGYGLTESSPVIAARRPTCNV--LGSVGHPINHTE 452
            SG   L     + F     GV++  GYG+TESSPV             GSVG  + + E
Sbjct: 281 GSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRLVPNVE 340

Query: 453 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 512
            KIVD ET E LP    G + VRG QVM+GY  NP AT + +D+DGWL+TGD+G+     
Sbjct: 341 AKIVDPETGESLPPNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLGYFDE-- 398

Query: 513 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGA 572
                    G L +  R K+ I    G  V P ELE   L    I    VI         
Sbjct: 399 --------DGYLFIVDRLKELIKYK-GFQVAPAELEALLLSHPEIADAAVIP-------- 441

Query: 573 IIVPDKE--EVLMAAKRLSIVHADASELSKEKTIS 605
              PD+E  E+ MA     +V    SELS+++ + 
Sbjct: 442 --YPDEEAGEIPMAF----VVRQPGSELSEDEVMQ 470

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  122 bits (309), Expect = 1e-29
 Identities = 73/217 (33%), Positives = 105/217 (48%), Gaps = 29/217 (13%)

Query: 394 KAGVSGGGSLPMH-IDLFYEAIGVK-VQVGYGLTESSPVIA---ARRPTCNVLGSVGHPI 448
           +  V+G  S+P+  ++ F   +GV  V  GYGL+E+S V            V G++G  I
Sbjct: 284 RLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAI 343

Query: 449 NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 508
              E KIV+    EV P G  G + VRG  VM+GY+ +P AT  A+D DGWL+TGD+G +
Sbjct: 344 AGVENKIVNELGEEV-PVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRL 402

Query: 509 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR 568
                 G        L +  R KD   +  G NV P E+EE       + +  VIG    
Sbjct: 403 DE---EGY-------LYIVDRKKDMF-IVGGFNVYPAEVEEVLYEHPAVAEAAVIG---- 447

Query: 569 RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTIS 605
                 VPD  E L    +  +V    +EL++E+ I+
Sbjct: 448 ------VPD--ERLGEVGKAYVVLKPGAELTEEELIA 476

Length = 513

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  119 bits (300), Expect = 7e-29
 Identities = 61/173 (35%), Positives = 83/173 (47%), Gaps = 24/173 (13%)

Query: 422 YGLTE-----SSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 476
           YG+TE     S+P+   RRP     G+VG P+   E++IVD +  E L AG  G ++VRG
Sbjct: 238 YGMTETGMALSNPLDGERRP-----GTVGLPLPGVEVRIVDEDGGEPLAAGEVGEIQVRG 292

Query: 477 SQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVL 536
             V   Y+  P AT +A  EDGW  TGD+G               G   + GR  D I+ 
Sbjct: 293 PNVFSEYWNKPEATAEAFTEDGWFKTGDVGV----------VDEDGYYRILGRKSDDIIK 342

Query: 537 STGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAA 585
           S G  V  LE+EEA L    + ++ VIG           A++VP+    L  A
Sbjct: 343 SGGYKVSALEIEEALLEHPGVAEVAVIGVPDPDWGEAVVAVVVPEAGAALTLA 395

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score =  120 bits (302), Expect = 1e-28
 Identities = 100/386 (25%), Positives = 146/386 (37%), Gaps = 89/386 (23%)

Query: 201 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYE 260
           T   D++A  ++TSGT G PKGVMLTH N+L   R+    +     D F+   P  H   
Sbjct: 183 TTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGH--- 239

Query: 261 RACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARR 320
            A G+                          H + +  L+       +   IFT  A   
Sbjct: 240 -ATGFL-------------------------HGVTAPFLIGARS---VLLDIFTPDACLA 270

Query: 321 VVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEK 380
           ++ +         T F  IY+   L   +KQP+ L AL  +L                  
Sbjct: 271 LLEQQRCTCMLGATPF--IYDLLNLL--EKQPADLSALRFFL------------------ 308

Query: 381 LVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSP--VIAARRPTC 438
                             GG ++P  +    +  G+K+   YG TESSP  V+    P  
Sbjct: 309 -----------------CGGTTIPKKVARECQQRGIKLLSVYGSTESSPHAVVNLDDPLS 351

Query: 439 NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG 498
             + + G+     EIK+VD     + P G +G    RG  V  GY   P  T +ALDE+G
Sbjct: 352 RFMHTDGYAAAGVEIKVVDEARKTL-PPGCEGEEASRGPNVFMGYLDEPELTARALDEEG 410

Query: 499 WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIR 558
           W  +GD+  +      G  +       + GR KD IV   GEN+   E+E+  L+   I 
Sbjct: 411 WYYSGDLCRM---DEAGYIK-------ITGRKKDIIV-RGGENISSREVEDILLQHPKIH 459

Query: 559 QIVVIGQDQRRPG----AIIVPDKEE 580
              V+     R G    A +V     
Sbjct: 460 DACVVAMPDERLGERSCAYVVLKAPH 485

Length = 547

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  116 bits (294), Expect = 1e-28
 Identities = 64/194 (32%), Positives = 90/194 (46%), Gaps = 31/194 (15%)

Query: 398 SGGGSLPM-HIDLFYEAIGVKVQVGYGLTESSPVIAA-------RRPTCNVLGSVGHPIN 449
           S    LP   +D   +  GV V   YG+TE++  IA+       R+P     GSVG P  
Sbjct: 125 SASAPLPPAVLDRLEKRFGVPVLEAYGMTEAAHQIASNPLPPLVRKP-----GSVGRPAG 179

Query: 450 HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 509
             E+ I+D +    LP G +G + +RG  V  GY  NP A ++A   DGW  TGD+G++ 
Sbjct: 180 -VEVAILD-DDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANREAF-RDGWFRTGDLGYLD 236

Query: 510 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ-DQR 568
                       G L L GR K+ I    GE + P E+EE  LR   + + VV G  D+ 
Sbjct: 237 ED----------GYLFLTGRIKELINRG-GEKISPREVEEVLLRHPAVAEAVVFGVPDEL 285

Query: 569 ---RPGAIIVPDKE 579
                 A +V   +
Sbjct: 286 YGEEVAAAVVLRAD 299

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score =  117 bits (296), Expect = 4e-28
 Identities = 70/208 (33%), Positives = 93/208 (44%), Gaps = 29/208 (13%)

Query: 408 DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAG 467
           +LF E  G+++  GYG TE SPVI+   P  N  G+VG P+   E++IV  ET+E LP G
Sbjct: 277 ELFEEKFGIRILEGYGATECSPVISVNTPMGNKPGTVGRPLPGIEVRIVSPETHEELPIG 336

Query: 468 SKGIVKVRGSQVMQGYFKNPSATK-QALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVL 526
             G++ VRG  VM GY  N   T    +  DGW +TGDIG I             G L +
Sbjct: 337 EGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDTGDIGKIDED----------GFLTI 386

Query: 527 EGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ---IVVIGQDQRRPGAIIV-------P 576
            GR K    +  GE V  L   E  L   L        V   D+++ G  IV        
Sbjct: 387 VGRLKRFAKIG-GEMV-SLTAVEELLSEILPEDSLHAAVEVPDEKK-GEKIVLLTTTEDL 443

Query: 577 DKEEVLMAAKRLSIVHADASELSKEKTI 604
           D EE+    +      A    L+  + I
Sbjct: 444 DPEELNAILR-----EAGLPNLAVPRKI 466

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  116 bits (293), Expect = 2e-27
 Identities = 75/229 (32%), Positives = 111/229 (48%), Gaps = 49/229 (21%)

Query: 418 VQVGYGLTESSPVI---AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV 474
           VQ+ YG+TE+SPV     A       + +VG    H E+K+VD +    +P G  G +  
Sbjct: 346 VQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPD-GATVPRGEIGELCT 404

Query: 475 RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTI 534
           RG  VM+GY+ NP AT +++DEDGW++TGD+  +             G + + GR+KD I
Sbjct: 405 RGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQ----------GYVRIVGRSKDMI 454

Query: 535 VLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE--EVLMAAKRLSIVH 592
           +   GEN+ P E+EE       +  + V G          VPD++  E ++A  RL   H
Sbjct: 455 I-RGGENIYPREIEEFLFTHPAVADVQVFG----------VPDEKYGEEIVAWVRLHPGH 503

Query: 593 ADASELSKEKTISLLYGELRKWTSKCSFQIG----PIHV--VDE-PFTV 634
           A + E            ELR++   C  +I     P +   VDE P TV
Sbjct: 504 AASEE------------ELREF---CKARIAHFKVPRYFRFVDEFPMTV 537

Length = 558

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  113 bits (286), Expect = 5e-27
 Identities = 57/172 (33%), Positives = 77/172 (44%), Gaps = 19/172 (11%)

Query: 397 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTESS-PVIAARRPTCNVLGSVGHPINHTEIKI 455
           V G          F E  GVK+  GYG+TE+  P+IA   P     GS G P    E++I
Sbjct: 201 VFGAPLPAAIWPAFEERFGVKLVEGYGMTETGVPIIAPGDP--APPGSCGRPRPGVEVRI 258

Query: 456 VDAETNEVLPAGSKGIVKVRGSQ---VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 512
           VD +  EV P G  G + VR  +   + +GY+  P AT +A   +GW +TGD G      
Sbjct: 259 VDEDGREV-PPGEVGELVVRPRRPWAMFKGYYGMPEATAKAW-RNGWFHTGDRGRRDED- 315

Query: 513 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 564
                    G L    R KD I    GEN+   E+E A L    + +  V+ 
Sbjct: 316 ---------GFLYFVDRKKDAIRRR-GENISSYEVEAAILAHPAVAEAAVVA 357

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  114 bits (287), Expect = 6e-27
 Identities = 61/194 (31%), Positives = 85/194 (43%), Gaps = 17/194 (8%)

Query: 398 SGGGSLPMHI-DLFYEAIGVK-VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 455
           SG   L   + +   +      ++ GYG+TE+ P      P     GSVG  + + E KI
Sbjct: 270 SGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPATTLTPPGDEKPGSVGRLVPNVEAKI 329

Query: 456 VDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG 515
           VD +  + L    +G + V+G Q+M+GY  NP ATK+ +DEDGWL+TGDIG+        
Sbjct: 330 VDEDGGKSLGPNERGELCVKGPQIMKGYLNNPEATKETIDEDGWLHTGDIGYFDE----- 384

Query: 516 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG----QDQRRPG 571
                 G   +  R K+ I    G  V P ELE   L    +    VIG         P 
Sbjct: 385 -----DGNFYIVDRKKELIKYK-GYQVPPAELEAVLLEHPKVADAAVIGIPDEVAGELPR 438

Query: 572 AIIVPDKEEVLMAA 585
           A +V      L   
Sbjct: 439 AYVVLKPGSKLTEQ 452

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score =  114 bits (287), Expect = 1e-26
 Identities = 69/184 (37%), Positives = 99/184 (53%), Gaps = 17/184 (9%)

Query: 394 KAGVSGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTE 452
           K  +SGG +L +     ++ + G  +  GYG+TE+SPV++        +G++G P+  T 
Sbjct: 329 KLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPSTL 388

Query: 453 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 512
            K++D + NE LP G  G + V+G QVM+GY++ P AT + LD DGWL TGDI  I    
Sbjct: 389 CKVIDDDGNE-LPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQED- 446

Query: 513 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEE--AALRSSLIRQIVVIGQDQRRP 570
                    G + +  R KD I++S G NV P ELE+  AAL   L  Q   IG    + 
Sbjct: 447 ---------GYMRIVDRKKDMILVS-GFNVYPNELEDVLAALPGVL--QCAAIGVPDEKS 494

Query: 571 GAII 574
           G  I
Sbjct: 495 GEAI 498

Length = 562

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  112 bits (283), Expect = 3e-26
 Identities = 76/236 (32%), Positives = 112/236 (47%), Gaps = 46/236 (19%)

Query: 382 VYKKIQSAI---GISKAGV----SGGGSLPMHIDLFYEAI--GVKVQVGYGLTESSPVIA 432
           +Y+KI  A    G+  +GV    SG  +LP+     +E +  G+ V+ GYGLTE+SP+I 
Sbjct: 320 LYEKIAEAAEERGVDLSGVRNAFSGAMALPVSTVELWEKLTGGLLVE-GYGLTETSPIIV 378

Query: 433 A------RRPTCNVLGSVGHPINHTEIKIVDAET-NEVLPAGSKGIVKVRGSQVMQGYFK 485
                  RRP     G VG P   TE++IVD E  +E +P G +G + VRG QV +GY+ 
Sbjct: 379 GNPMSDDRRP-----GYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWN 433

Query: 486 NPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPL 545
            P  T ++   DGW  TGD+  +             G + +  R K+ I+ + G NV P 
Sbjct: 434 RPEETAKSF-LDGWFRTGDVVVMEED----------GFIRIVDRIKELII-TGGFNVYPA 481

Query: 546 ELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKE 601
           E+EE       +    V+G     P      D  E ++AA    +V    + L  E
Sbjct: 482 EVEEVLREHPGVEDAAVVG----LPR----EDGSEEVVAA----VVLEPGAALDPE 525

Length = 573

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  111 bits (279), Expect = 1e-25
 Identities = 67/177 (37%), Positives = 97/177 (54%), Gaps = 16/177 (9%)

Query: 398 SGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVIAARRPTCNV--LGSVGHPINHTEIK 454
           SGG +L       +E + G  +  GYGLTE+SPV A+  P   +  LG+VG P+  T +K
Sbjct: 340 SGGTALVKATAERWEQLTGCTIVEGYGLTETSPV-ASTNPYGELARLGTVGIPVPGTALK 398

Query: 455 IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR 514
           ++D + NE LP G +G + ++G QVM+GY++ P AT +ALD +GW  TGDI  I P    
Sbjct: 399 VIDDDGNE-LPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPD--- 454

Query: 515 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG 571
                  G + +  R KD I++S G NV P E+E+  +    +     IG    R G
Sbjct: 455 -------GFVRIVDRKKDLIIVS-GFNVYPNEIEDVVMAHPKVANCAAIGVPDERSG 503

Length = 562

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score =  111 bits (278), Expect = 1e-25
 Identities = 68/177 (38%), Positives = 96/177 (54%), Gaps = 22/177 (12%)

Query: 394 KAGVSGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVIAA-----RRPTCNVLGSVGHP 447
           +A +SG   LP+ +   +E + G K+  GYGLTESSPV  +     +R    V GS+G P
Sbjct: 326 RACISGSAPLPVEVQEKFETVTGGKLVEGYGLTESSPVTHSNFLWEKR----VPGSIGVP 381

Query: 448 INHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW 507
              TE  I+  ET E LP G  G + V+G Q+M+GY+  P  T   L +DGWL+TGD+G+
Sbjct: 382 WPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVL-QDGWLHTGDVGY 440

Query: 508 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 564
           +             G   ++ R KD IV S G NV P E+EE       ++++V IG
Sbjct: 441 MDED----------GFFYVKDRKKDMIVAS-GFNVYPREVEEVLYEHEKVQEVVTIG 486

Length = 563

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  106 bits (267), Expect = 2e-24
 Identities = 68/221 (30%), Positives = 102/221 (46%), Gaps = 36/221 (16%)

Query: 397 VSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVIAARRPTCN---VLGSVGHPINHTE 452
           + GG  +P        EA+G KV   YG+TE  P++    P         + G P+   E
Sbjct: 214 LCGGAPVPRELARRAAEALGAKVVRAYGMTEV-PLVTVGTPDDPDDKRAATDGRPVPGVE 272

Query: 453 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 512
           ++IVD + N+V P G +G ++VRG Q+  GY   P  T+   D DGW  TGD+G +    
Sbjct: 273 VRIVDDDGNDV-PPGEEGELQVRGPQLFLGYLDPPDNTEAFTD-DGWFRTGDLGRLDAD- 329

Query: 513 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQR--- 568
                    G L + GR KD I+   GEN+   E+E+  LR   + ++ V+   D+R   
Sbjct: 330 ---------GYLRITGRKKDIIIRG-GENISAREIEDLLLRHPAVAEVAVVAMPDERLGE 379

Query: 569 RPGAIIVP------DKEEVLMAAKRLSIVHADASELSKEKT 603
           R  A++VP         E+          H  A  L+K+K 
Sbjct: 380 RVCAVVVPAPGASLTLAELTE--------HLAAQGLAKQKW 412

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score =  105 bits (263), Expect = 1e-23
 Identities = 61/177 (34%), Positives = 93/177 (52%), Gaps = 17/177 (9%)

Query: 393 SKAGVSGGGSLPMH---IDLFYEAIGVKVQVGYGLTESSPVIAARRPTC-NVLGSVGHPI 448
           S   +S GG + +     + + +  G  +  GYGLTE SP+++          GS+G P+
Sbjct: 325 SSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPV 384

Query: 449 NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 508
             TEIK+VD + NEV P G  G + V+G QVM GY++ P AT + + +DGWL TGDI  +
Sbjct: 385 PSTEIKLVDDDGNEV-PPGEPGELWVKGPQVMLGYWQRPEATDEVI-KDGWLATGDIAVM 442

Query: 509 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ 565
                        G L +  R KD I++S G NV P E+E+  +    + ++  +G 
Sbjct: 443 DEE----------GFLRIVDRKKDMILVS-GFNVYPNEIEDVVMLHPKVLEVAAVGV 488

Length = 560

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score =  102 bits (257), Expect = 6e-23
 Identities = 49/143 (34%), Positives = 66/143 (46%), Gaps = 13/143 (9%)

Query: 408 DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAG 467
             F         +   LT      AA  P       +G PI    I+IVD E   +LP G
Sbjct: 340 RGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIVD-EDGALLPEG 398

Query: 468 SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLE 527
             G ++VRG  V  GY++NP A  +A  EDGW  TGD+G++  H          G L + 
Sbjct: 399 EVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGFL--HD---------GRLTIT 447

Query: 528 GRAKDTIVLSTGENVEPLELEEA 550
           GR KD I+++ G N    E+E A
Sbjct: 448 GREKDMIIIN-GVNYYNHEIEAA 469

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  100 bits (252), Expect = 9e-23
 Identities = 59/201 (29%), Positives = 89/201 (44%), Gaps = 27/201 (13%)

Query: 392 ISKAGVSGGGSLPMHIDL---FYEAIGVKVQVGYGLTESSP---VIAARRPTCNVLGSVG 445
           +S   V GGG   +   +        G+  + GYGLTE+          RP       +G
Sbjct: 198 LSSLKVVGGGGAALPPAVAERLKALTGLLYEEGYGLTETHTCTHFNPPDRPK---PQCLG 254

Query: 446 HPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL---DEDGWLNT 502
            P+  T+ +++D ET E LP G +G + VRG QV +GY+  P AT ++    D   +  T
Sbjct: 255 IPVFGTDARVIDPETGEELPPGEEGEIVVRGPQVFKGYWNRPEATAESFIELDGKRFFRT 314

Query: 503 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVV 562
           GD+G+I             G      R K  I +S G  V P E+E    +   + ++ V
Sbjct: 315 GDLGYIDEE----------GYFFFLDRVKRMINVS-GYKVWPAEVEALLYQHPAVLEVCV 363

Query: 563 IGQ-DQRR---PGAIIVPDKE 579
           IG+ D RR     A +V   +
Sbjct: 364 IGRPDPRRGEVVKAFVVLKPD 384

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  101 bits (254), Expect = 1e-22
 Identities = 64/208 (30%), Positives = 94/208 (45%), Gaps = 34/208 (16%)

Query: 397 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPT-----------CNVLGSVG 445
           V GG +LP  +    E  GV+V   +G+TE+SP+    R               +    G
Sbjct: 285 VVGGSALPRSLIEKLEERGVEVIHAWGMTETSPLGTVSRLKPHLVDLPEEEKLELRAKQG 344

Query: 446 HPINHTEIKIVDAETNEVLPAG-SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD 504
            P+   E++IVD E NE+   G + G + VRG  V   Y+K+P  T+  L  DGW  TGD
Sbjct: 345 RPVPGVELRIVDDEGNELPWDGKTVGELVVRGPWVTGSYYKDPEKTE-ELTRDGWFRTGD 403

Query: 505 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 564
           +  I             G + +  RAKD I  S GE +  +ELE A +    + +  V+G
Sbjct: 404 VAVIDED----------GYIQITDRAKDVIK-SGGEWISSVELENALMAHPAVAEAAVVG 452

Query: 565 QD----QRRPGAIIVP------DKEEVL 582
                   RP A++V        +EE+L
Sbjct: 453 VPHEKWGERPLAVVVLKPGAKVTEEELL 480

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  100 bits (251), Expect = 3e-22
 Identities = 73/293 (24%), Positives = 130/293 (44%), Gaps = 50/293 (17%)

Query: 56  LEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGA----INVVRGSRSSS 111
           L++ +   A  LR +GVK  +++++F  NS  +L A   +   GA    IN+    R   
Sbjct: 37  LDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINI----RLKP 92

Query: 112 EELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVF 171
           EE+ +I N +E   + V + EF   +A  L     +R +I+         P       V 
Sbjct: 93  EEIAYILNDAEDRVVLV-DSEFVPLLAAILPQLPTVRTVIVE-----GDGPAAPLAPEVG 146

Query: 172 SYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNL- 230
            Y+E++               A   + +  I  +D A  +YTSGTTG+PKGV+L+H+NL 
Sbjct: 147 EYEELLA-------------AASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLF 193

Query: 231 LH--QIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA---VRNLKDD 285
           LH   + +   +      D +L ++P +HV+     Y     G + +        NL D 
Sbjct: 194 LHSLAVCAWLKLSR---DDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRRFDPENLLDL 250

Query: 286 LQRYQPHYMISVPLVYETL----------YSGIQKQIFTSSAARRVVARALIR 328
           ++  +  +  +VP +++ L          +S ++  I+  +A    +  AL+R
Sbjct: 251 IETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAA----LPPALLR 299

Length = 521

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 99.8 bits (249), Expect = 5e-22
 Identities = 64/314 (20%), Positives = 114/314 (36%), Gaps = 49/314 (15%)

Query: 54  SKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEE 113
            +L++     A  L+ +GVKP +++++   NS  +L+A    L  GA+ V    R +  E
Sbjct: 42  RELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRE 101

Query: 114 LLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSY 173
           L +I N + +  L     EF   +               L      +     ++    + 
Sbjct: 102 LAYILNDAGAKVLITS-AEFAALLE---------AVAEALPVVLVVLLVGDADDRLPITL 151

Query: 174 DEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQ 233
           + +   G                     +  DD+A  +YTSGTTG PKGV+LTH+NLL  
Sbjct: 152 EALAAEGPGPDADARP------------VDPDDLAFLLYTSGTTGLPKGVVLTHRNLLAN 199

Query: 234 IRSLYDIVPA--ENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAV---------RNL 282
              +   +       D  LS LP +H++       + +  +    T V           +
Sbjct: 200 AAGIAAALGGGLTPDDVVLSWLPLFHIF--GLIVGLLA-PLLGGGTLVLLSPEPFDPEEV 256

Query: 283 KDDLQRYQPHYMISVPLVY----------ETLYSGIQKQIFTSSAARRVVARALIRISFA 332
              +++Y+   +  VP             +   S   + + +  A    +   L+     
Sbjct: 257 LWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAP---LPPELLERFEE 313

Query: 333 YTAFKRIYEGFCLT 346
                 I EG+ LT
Sbjct: 314 RFGPIAILEGYGLT 327

Length = 534

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 99.3 bits (248), Expect = 5e-22
 Identities = 52/138 (37%), Positives = 76/138 (55%), Gaps = 21/138 (15%)

Query: 443 SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNT 502
            VG PI+  EI+IVD +  EVLP  + G ++++G  V  GY+ NP ATK+++  DGWL T
Sbjct: 315 EVGSPIDGCEIRIVD-DAGEVLPDRTIGHIQIKGDNVTSGYYNNPEATKKSITPDGWLKT 373

Query: 503 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVV 562
           GD+G++             G LV+ GRAKD I+++ G+N  P ++E  A          V
Sbjct: 374 GDLGFLR-----------NGRLVITGRAKDIIIVN-GQNYYPHDIERVA--------EQV 413

Query: 563 IGQDQRRPGAIIVPDKEE 580
            G    R  A  V D++E
Sbjct: 414 EGIKLGRVAACGVYDEKE 431

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score =  100 bits (252), Expect = 7e-22
 Identities = 47/126 (37%), Positives = 66/126 (52%), Gaps = 14/126 (11%)

Query: 397  VSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRP----------TCNVLGSVG 445
            V+G   L   + D F E  G+++  GYG TE+SPV +   P          T +  GSVG
Sbjct: 904  VAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVG 963

Query: 446  HPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL---DEDGWLNT 502
             P+    ++IVD ET E LP G  G++ + G QVM+GY  +P  T + +   D  GW  T
Sbjct: 964  MPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVT 1023

Query: 503  GDIGWI 508
            GD G +
Sbjct: 1024 GDKGHL 1029

Length = 1146

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 99.2 bits (248), Expect = 9e-22
 Identities = 53/168 (31%), Positives = 75/168 (44%), Gaps = 28/168 (16%)

Query: 443 SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ------ALDE 496
           S G P+   E++IVD ET   LP G  G + VRG  V  GY+  P AT +      A DE
Sbjct: 356 SCGRPLPGHEVRIVDPETRRPLPDGEVGEIWVRGPSVAAGYWNRPEATAETFGARLATDE 415

Query: 497 DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSL 556
            GWL TGD+G++             G L + GR KD I++  G N  P ++E    R+  
Sbjct: 416 GGWLRTGDLGFLH-----------DGELYVTGRLKDLIIIR-GRNHYPQDIEATVERAHP 463

Query: 557 IRQIVVIGQDQRRPGAIIVPDKEE---VLMAAKRLSIVHADASELSKE 601
             +            A  V    E   V++A  R   + AD + L++ 
Sbjct: 464 ALRPG-------AAAAFSVDGDGEERLVVVAEVRRRGLPADLAALAEA 504

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 98.9 bits (247), Expect = 1e-21
 Identities = 43/93 (46%), Positives = 59/93 (63%), Gaps = 5/93 (5%)

Query: 421 GYGLTESSPVIA-----ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 475
           GYG+TE+ PV+A     A+ P     GS G  + + E+KIVD ET   LP    G + +R
Sbjct: 330 GYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIR 389

Query: 476 GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 508
           G Q+M+GY  +P AT   +D+DGWL+TGDIG+I
Sbjct: 390 GPQIMKGYLNDPEATANTIDKDGWLHTGDIGYI 422

Length = 537

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score = 98.4 bits (245), Expect = 1e-21
 Identities = 58/199 (29%), Positives = 98/199 (49%), Gaps = 29/199 (14%)

Query: 398 SGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVI-------AARRPTCNVLGSVGHPINH 450
           +GG   P  +   +   G     G+G+TE+SP +       A R+      GS+G P+  
Sbjct: 271 NGGAPCPEELMREFIDRGFLFGQGFGMTETSPTVFMLSEEDARRKV-----GSIGKPVLF 325

Query: 451 TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 510
            + +++D   N+V   G  G + +RG  VM+ Y+  P AT++ + +DGWL TGD+  +  
Sbjct: 326 CDYELIDENKNKV-EVGEVGELLIRGPNVMKEYWNRPDATEETI-QDGWLCTGDLARVDE 383

Query: 511 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR- 569
                      G + + GR K+ I+ S GEN+ PLE+E+   + S + ++ V+G+   + 
Sbjct: 384 D----------GFVYIVGRKKEMII-SGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKW 432

Query: 570 ---PGAIIVPDKEEVLMAA 585
              P A IV     VL+  
Sbjct: 433 GEIPIAFIVKKSSSVLIEK 451

Length = 496

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 97.3 bits (243), Expect = 2e-21
 Identities = 52/164 (31%), Positives = 76/164 (46%), Gaps = 20/164 (12%)

Query: 422 YGLTESSPVIAARRPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQV 479
           YG+TE++  I    P      LGS G P+   E+KI       V+P   +G + V+G  V
Sbjct: 285 YGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEKDGV--VVPPFEEGEIVVKGPNV 342

Query: 480 MQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTG 539
            +GY     AT++   +DGW  TGDIG++             G L +  R  D I+ S G
Sbjct: 343 TKGYLNREDATRETF-QDGWFKTGDIGYLDEE----------GFLYVLDRRSDLII-SGG 390

Query: 540 ENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKE 579
           EN+ P E+EE  L    + +  V+G    +    P A +V   E
Sbjct: 391 ENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGE 434

Length = 483

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 96.2 bits (240), Expect = 7e-21
 Identities = 52/155 (33%), Positives = 79/155 (50%), Gaps = 13/155 (8%)

Query: 411 YEAIGVKVQVGYGLTESSPVIAARRPTCNVL-GSVGHPINHTEIKIVDAETNEVLPAGSK 469
            E  G  +  GYGL+E+SPV            G++G P+  TE+ I D + N+ LP G  
Sbjct: 348 LEMTGCPITEGYGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSIRDDDGND-LPLGEP 406

Query: 470 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR 529
           G + +RG QVM GY+  P  T + +  DG+  TGD+G +     RG ++       +  R
Sbjct: 407 GEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDE---RGYTK-------IVDR 456

Query: 530 AKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 564
            KD I++S G NV P E+EE       + ++  +G
Sbjct: 457 KKDMILVS-GFNVYPNEIEEVVASHPGVLEVAAVG 490

Length = 557

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 93.9 bits (234), Expect = 1e-20
 Identities = 59/173 (34%), Positives = 80/173 (46%), Gaps = 32/173 (18%)

Query: 394 KAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA------RRPTCNVLGSVGH 446
           +  ++G   LP+ +   F    GV V  GYG+TE + V A       RRP     GSVG 
Sbjct: 125 RYALTGAAPLPVEVARRFEAVTGVPVVEGYGMTEGTGVSAINPRGGPRRP-----GSVGL 179

Query: 447 PINHTEIKIV----DAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNT 502
            + +T +++               G  G++ +RG  V  GY  N +    A  EDGWLNT
Sbjct: 180 RLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYL-NDAHNAGARLEDGWLNT 238

Query: 503 GDIGWIAPHHSRGRSRRCG--GVLVLEGRAKDTIVLSTGENVEPLELEEAALR 553
           GD+G            R    G L L GRAKD I+   G N++P  +EEA LR
Sbjct: 239 GDLG------------RIDADGYLWLTGRAKDLIIRG-GHNIDPQMIEEALLR 278

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 93.1 bits (232), Expect = 2e-20
 Identities = 62/214 (28%), Positives = 88/214 (41%), Gaps = 40/214 (18%)

Query: 398 SGGGSLPMHIDLFYEAI-GVKVQVGYGLTESS------PVIAARRPTCNVLGSVGHPINH 450
           +GG      I     A    K+   YGLTE+       P    RRP      S+G  I +
Sbjct: 125 AGGALPAKTILQLRRAFPDAKLFSMYGLTEAFRSTYLPPEELDRRP-----DSIGKAIPN 179

Query: 451 TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-----DGWLNTGDI 505
            E+ +VD + N   P G  G +  RG+ VM+GY+ +P AT + L       +  L TGD+
Sbjct: 180 VELWVVDEDGNRCAP-GEVGELVHRGANVMKGYWNDPEATAERLRPGPLPGEIVLYTGDL 238

Query: 506 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ 565
             +             G L   GR KD ++ + G  V P E+EE      L+ +  VIG 
Sbjct: 239 VRMDEE----------GYLYFVGR-KDDMIKTRGYRVSPTEIEEVICAHPLVAEAAVIGV 287

Query: 566 DQRRPGAIIV----------PDKEEVLM-AAKRL 588
                G  IV           D++E+L    K L
Sbjct: 288 PDPLLGQAIVAVVVSADGESLDEKELLKHCRKHL 321

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 94.6 bits (236), Expect = 2e-20
 Identities = 60/196 (30%), Positives = 89/196 (45%), Gaps = 40/196 (20%)

Query: 422 YGLTE-----SSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 476
           YG+TE     S+P    RR      G+VG P+    +++ D ET   LP G  G+++V+G
Sbjct: 301 YGMTETNMNTSNPYDGERRA-----GTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKG 355

Query: 477 SQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVL 536
             V +GY++ P  T +    DG+  TGD+G I             G + + GR KD I+ 
Sbjct: 356 PNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDER----------GYVHIVGRGKDLII- 404

Query: 537 STGENVEPLELEEAALRSSLIRQI------VVIGQDQRRPG----AIIVPDKEEVLMAAK 586
           S G NV P E+E        I ++       VIG      G    A++VP     L  A 
Sbjct: 405 SGGYNVYPKEVE------GEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAALDEA- 457

Query: 587 RLSIVHADASELSKEK 602
             +I+ A    L++ K
Sbjct: 458 --AILAALKGRLARFK 471

Length = 504

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 94.7 bits (236), Expect = 3e-20
 Identities = 106/467 (22%), Positives = 167/467 (35%), Gaps = 130/467 (27%)

Query: 198 KYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLP--P 255
               I  D +A Y++TSG+TG PK V+ T + +   I     + P E        L   P
Sbjct: 213 AIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMP 272

Query: 256 WH------------VYERACGYFIFSRGI-ELMYTAVRNLKDDLQRYQPHYMISVPLVYE 302
           W+            ++     Y    + +  +    +RNL++      P    +VP  Y 
Sbjct: 273 WNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLRE----ISPTVYGNVPAGYA 328

Query: 303 TLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRI----YEGFCLTRNQKQPSYLVAL 358
            L   ++K                +R SF    FK +    Y G               L
Sbjct: 329 MLAEAMEKD-------------DALRRSF----FKNLRLMAYGG-------------ATL 358

Query: 359 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKV 418
            D L+ R+                      A+ +   G         H   FY       
Sbjct: 359 SDDLYERM---------------------QALAVRTTG---------HRIPFY------- 381

Query: 419 QVGYGLTESSPVI-----AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVK 473
             GYG TE++P          R      G +G P+   E+K+         P G K  V+
Sbjct: 382 -TGYGATETAPTTTGTHWDTERV-----GLIGLPLPGVELKLA--------PVGDKYEVR 427

Query: 474 VRGSQVMQGYFKNPSATKQALDEDGWLNTGDIG-WIAPHH-SRGRSRRCGGVLVLEGRAK 531
           V+G  V  GY K+P  T  A DE+G+   GD   ++ P    +G        L+ +GR  
Sbjct: 428 VKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKG--------LIFDGRVA 479

Query: 532 DTIVLSTGE--NVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLS 589
           +   LSTG   +V  L  +  A  S +I   VV GQD+   G +  P+      A ++L+
Sbjct: 480 EDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQDRAFIGLLAWPN----PAACRQLA 535

Query: 590 IVHADASE--LSKEKTISLLYGELRKWTSKC---SFQIGPIHVVDEP 631
                A E  +     +++L   L    ++    S +I    ++ EP
Sbjct: 536 GDPDAAPEDVVKHPAVLAILREGLSAHNAEAGGSSSRIARALLMTEP 582

Length = 624

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 93.5 bits (233), Expect = 3e-20
 Identities = 63/178 (35%), Positives = 84/178 (47%), Gaps = 33/178 (18%)

Query: 412 EAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGI 471
            A+G+ V  GYGL+E + V++   P  +  GSVG P+ H ++ I  A   E+L       
Sbjct: 258 RALGLPVYEGYGLSECASVVSLNTPGADRPGSVGKPLPHVQVSI--ANDGEIL------- 308

Query: 472 VKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAK 531
             VRGS  M GY   P AT      D W  TGD+G +             G L + GR K
Sbjct: 309 --VRGSL-MLGYLGEPPAT------DDWWATGDLGHLDEE----------GYLYINGRKK 349

Query: 532 DTIVLSTGENVEPLELEEAALRSSL-IRQIVVIGQDQRRPGAIIVPDKE---EVLMAA 585
           + I+ S G NV P E  E+ L+ +  I Q VV G  Q    A+IVP      + L AA
Sbjct: 350 NLIITSFGRNVSP-EWVESELQQAPAIAQAVVFGDAQPFLVALIVPAPNISDDQLEAA 406

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 92.5 bits (230), Expect = 6e-20
 Identities = 58/189 (30%), Positives = 85/189 (44%), Gaps = 27/189 (14%)

Query: 399 GGGSLPMHIDLFYEAI--GVKVQVGYGLTES-SPVIAARRPTCNVLGSVGHPINHTEIKI 455
           GG ++P    L  EA   G+ + + YG+TE+ S V  A     +    VG P+   EIKI
Sbjct: 227 GGSAIP--APLIEEAQQYGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKI 284

Query: 456 VDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG 515
                         G + V+G+ +M+GY      T  A ++ GW NTGDIG +       
Sbjct: 285 KVDNKEGH------GEIMVKGANLMKGYLYQGELT-PAFEQQGWFNTGDIGELDGE---- 333

Query: 516 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQR---RPG 571
                 G L + GR  D I+ S GEN+ P E+E    +   I++ VV+   D      P 
Sbjct: 334 ------GFLYVLGRRDDLII-SGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPV 386

Query: 572 AIIVPDKEE 580
           A IV + + 
Sbjct: 387 AYIVSESDI 395

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 92.6 bits (230), Expect = 9e-20
 Identities = 68/238 (28%), Positives = 103/238 (43%), Gaps = 43/238 (18%)

Query: 388 SAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPV---------IAARRPTC 438
           +A+    A  +GG        L +   G+ +  G+G++E+  V         I A+    
Sbjct: 249 AALRHLTALFTGGAPHAAEDILGWLDDGIPMVDGFGMSEAGTVFGMSVDCDVIRAK---- 304

Query: 439 NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG 498
              G+ G P    + ++VD + N+  PAG  G + +RG  +  GY++ P AT +A   DG
Sbjct: 305 --AGAAGIPTPTVQTRVVDDQGNDC-PAGVPGELLLRGPNLSPGYWRRPQATARAFTGDG 361

Query: 499 WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIR 558
           W  TGDI            R   G   +  R KD + +S GENV P E+E        IR
Sbjct: 362 WFRTGDIA----------RRDADGFFWVVDRKKD-MFISGGENVYPAEIEAVLADHPGIR 410

Query: 559 QIVVIGQDQRRPGAIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKW 614
           +  V+G          + D +  EV      L+IV AD + L  E+  S L   L K+
Sbjct: 411 ECAVVG----------MADAQWGEV----GYLAIVPADGAPLDLERIRSHLSTRLAKY 454

Length = 488

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 91.9 bits (229), Expect = 1e-19
 Identities = 53/207 (25%), Positives = 77/207 (37%), Gaps = 36/207 (17%)

Query: 410 FYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHT---------EIKIVDAET 460
             E +G  +Q  +G+ E              L      I  T         EI+IVD + 
Sbjct: 275 VEERLGCPLQQVFGMAEGLV-------NYTRLDDPPDVIMRTQGRPISPADEIRIVDDQG 327

Query: 461 NEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRC 520
             V P G  G +  RG   ++GY++ P    +A  +DG+  TGD+  I            
Sbjct: 328 EPV-PPGEVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYRTGDLVRIDA---------- 376

Query: 521 GGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQR---RPGAIIVP 576
            G   + GR KD I    GE + P E+E   L    +    V+G  D+    R  A +VP
Sbjct: 377 DGYYRVVGRIKDQINRG-GEKISPEEIENLLLSHPAVADAAVVGMPDEVLGERICAFVVP 435

Query: 577 -DKEEVLMAAKRLSIVHADASELSKEK 602
                  +A  R          L+K K
Sbjct: 436 RGGAAPTLAELR---AFLREQGLAKFK 459

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 90.8 bits (226), Expect = 4e-19
 Identities = 55/196 (28%), Positives = 95/196 (48%), Gaps = 35/196 (17%)

Query: 412 EAIGVKVQVGYGLTESSP--VIAARRPTCNVLGS---------VGHPINH-TEIKIVDAE 459
           E +G +V   YGLTE+     +   +P  + L +          G       E+ +VD E
Sbjct: 302 EELGFEVTHVYGLTETYGPITVCEWKPEWDALPAEERARLKARQGVRYVGLEEVDVVDPE 361

Query: 460 TNEVLPAGSK--GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRS 517
           T + +P   K  G + +RG+ VM+GY+KNP AT++A    GW ++GD+  + P       
Sbjct: 362 TMKDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEAF-AGGWFHSGDLAVVHPD------ 414

Query: 518 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ-DQR---RPGAI 573
               G + ++ R+KD I++S GEN+  +E+E    +   + +  V+ + D++    P A 
Sbjct: 415 ----GYIEIKDRSKD-IIISGGENISSIEVEGVLYKHPAVLEAAVVARPDEKWGETPCAF 469

Query: 574 IVPDK-----EEVLMA 584
           +V        EE L+ 
Sbjct: 470 VVLKPGASVTEEELIE 485

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 88.9 bits (221), Expect = 9e-19
 Identities = 64/189 (33%), Positives = 92/189 (48%), Gaps = 18/189 (9%)

Query: 397 VSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 455
           VS G +LP  + + + EA G+++  G G TE   +  + RP     G+ G P+   E ++
Sbjct: 214 VSAGEALPAGLAERWAEATGIEILDGIGSTEVLHIFISNRPGAARPGTTGRPVPGYEARL 273

Query: 456 VDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG 515
           VD    EV PAG+ G + VRG  +  GY+  P  T++ L  DGWL TGD           
Sbjct: 274 VDESGREV-PAGTVGDLWVRGPSLAPGYWNLPEKTQRTL-RDGWLRTGDR---------- 321

Query: 516 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQR---RPG 571
            SR   G    +GRA D I +S G+ V PLE+E A      + +  V+   D+    R  
Sbjct: 322 FSRDADGWYRYQGRADDMIKVS-GQWVSPLEVEAALGEHPAVAEAAVVAVPDEDGLVRLK 380

Query: 572 AIIVPDKEE 580
           A +VP   E
Sbjct: 381 AFVVPRPGE 389

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 87.7 bits (218), Expect = 4e-18
 Identities = 56/173 (32%), Positives = 80/173 (46%), Gaps = 42/173 (24%)

Query: 400 GGSLPMHIDL---FYEAIGVKVQVGYGLTES------SPVIAARRPTCNVLGSVGHPINH 450
            G+ P+ +++   F  A GV++  GYGLTE+      +P    RR      GSVG  + +
Sbjct: 340 CGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPDGERRI-----GSVGLRLPY 394

Query: 451 TEIKIV----------DAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWL 500
             +++V          D   +EV      G++ + G  V  GY    +  K    EDGWL
Sbjct: 395 QRVRVVILDDAGRYLRDCAVDEV------GVLCIAGPNVFSGYL-EAAHNKGLWLEDGWL 447

Query: 501 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR 553
           NTGD+G I             G   L GRAKD I+   G N++P  +EEA LR
Sbjct: 448 NTGDLGRIDAD----------GYFWLTGRAKDLIIRG-GHNIDPAAIEEALLR 489

Length = 632

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 87.6 bits (217), Expect = 4e-18
 Identities = 57/162 (35%), Positives = 84/162 (51%), Gaps = 15/162 (9%)

Query: 415 GVKVQVGYGLTESSPVIAARRPTC--NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIV 472
           G+ +   YGLTE+SP  A   P       GS+G PI  T+  I D +   VL  G  G +
Sbjct: 354 GLTLVEAYGLTETSPA-ACINPLTLKEYNGSIGLPIPSTDACIKD-DAGTVLAIGEIGEL 411

Query: 473 KVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKD 532
            ++G QVM+GY+K P  T + +D DGWL+TGDI          R    G V +++ R KD
Sbjct: 412 CIKGPQVMKGYWKRPEETAKVMDADGWLHTGDI---------ARMDEQGFVYIVD-RKKD 461

Query: 533 TIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAII 574
            I++S G NV P E+E+       + ++  +G    + G I+
Sbjct: 462 MILVS-GFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIV 502

Length = 560

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score = 86.4 bits (215), Expect = 6e-18
 Identities = 26/75 (34%), Positives = 45/75 (60%)

Query: 56  LEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELL 115
           L + +   A GL  +GVKP +++++ ++N   W++AD  +LA GA+ V     SS EE+ 
Sbjct: 11  LAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPTSSPEEVA 70

Query: 116 HIYNHSESVALAVEN 130
           +I N S +  + VE+
Sbjct: 71  YILNDSGARVVFVED 85

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score = 84.9 bits (211), Expect = 2e-17
 Identities = 58/261 (22%), Positives = 104/261 (39%), Gaps = 64/261 (24%)

Query: 54  SKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEE 113
           ++L++    FA  L+ +GVK  ++++L   N  ++ +A  G+L  GA+ V      +  E
Sbjct: 28  AELDELSDRFAAYLQQLGVKKGDRVALMLPNCPQFPIAYFGILKAGAVVVPVNPLYTPRE 87

Query: 114 LLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSY 173
           L H  N S +                        + +I+                   S+
Sbjct: 88  LEHQLNDSGA------------------------KVLIV-----------------AISF 106

Query: 174 DEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQ 233
           ++ +  G                     +  DD+A   YT GTTG PKG MLTH+NL+  
Sbjct: 107 EDALASGA-------------PLPLPVELSPDDLAVLQYTGGTTGVPKGAMLTHRNLVAN 153

Query: 234 IRSLYDIVPA--ENGDKFLSMLPPWHVYERACG--YFIFSRGIELMYTAVR--NLKDDLQ 287
           ++ +   V    E  D+FL+ LP +H++         +      ++    R  N+  +++
Sbjct: 154 VQQIAAWVKDLREGEDRFLTALPLFHIFGLTVNMLLGLRLGATNVLVPNFRPINVLKEIK 213

Query: 288 RYQPHYMISVPLVYETLYSGI 308
           RY+      VP    TLY+ +
Sbjct: 214 RYRFTIFPGVP----TLYNAL 230

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 84.2 bits (208), Expect = 5e-17
 Identities = 53/162 (32%), Positives = 77/162 (47%), Gaps = 21/162 (12%)

Query: 421 GYGLTES---SPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 477
            YGLTE+     ++ A R     +GS G  + H EI+I D      LP   KG + +RG 
Sbjct: 296 AYGLTETCSGDTLMEAGREI-EKIGSTGRALAHVEIRIAD-GAGRWLPPNMKGEICMRGP 353

Query: 478 QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLS 537
           +V +GY+K+P  T +A     W  +GD+G++             G L L  R KD I +S
Sbjct: 354 KVTKGYWKDPEKTAEAF-YGDWFRSGDVGYLDEE----------GFLYLTDRKKDMI-IS 401

Query: 538 TGENVEPLELEEAALRSSLIRQIVVIG-QDQR---RPGAIIV 575
            GEN+   E+E        + +  VIG  D R   R  A++V
Sbjct: 402 GGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVV 443

Length = 497

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score = 82.6 bits (205), Expect = 1e-16
 Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 19/204 (9%)

Query: 56  LEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELL 115
           L   +   A  L  +G+   +++++++ NS  W++A  G L  GA+ V   +R +++E  
Sbjct: 36  LNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTADEAA 95

Query: 116 HIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDE 175
           +I    ++ AL V    F            A+  +++          D      + ++ +
Sbjct: 96  YILARGDAKALFVLGL-FLGVDYSATTRLPALEHVVIC-----ETEEDDPHTEKMKTFTD 149

Query: 176 IIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR 235
            +  G  + +A               +  DD+A  ++TSGTTG PKG MLTH+ LL    
Sbjct: 150 FLAAGDPAERA-------------PEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAA 196

Query: 236 SLYDIVPAENGDKFLSMLPPWHVY 259
              + +    GD++L+  P +HV+
Sbjct: 197 DWAEYLGLTEGDRYLAANPFFHVF 220

Length = 513

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 83.2 bits (206), Expect = 1e-16
 Identities = 48/132 (36%), Positives = 70/132 (53%), Gaps = 12/132 (9%)

Query: 444 VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTG 503
           VG P+  TE KI D ET E+LP G++G + VR   +++GY+  P AT +AL  DGWL+TG
Sbjct: 389 VGLPVPGTEFKICDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEAL-RDGWLHTG 447

Query: 504 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVI 563
           DIG I             G L   GR K+ + ++ G +V P E+E    +   +    V+
Sbjct: 448 DIGKIDEQ----------GFLHYLGRRKEMLKVN-GMSVFPSEVEALLGQHPAVLGSAVV 496

Query: 564 GQDQRRPGAIIV 575
           G+     G + V
Sbjct: 497 GRPDPDKGQVPV 508

Length = 567

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 83.2 bits (206), Expect = 1e-16
 Identities = 52/171 (30%), Positives = 80/171 (46%), Gaps = 20/171 (11%)

Query: 412 EAIGVKVQVGYGLTESSPV--IAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSK 469
            A+G K+   +G+TE+  V       P      + G P+   E+++VDA+    LPAG  
Sbjct: 334 AALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVDADGAP-LPAGQI 392

Query: 470 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR 529
           G ++VRG     GY K P       D DGW +TGD+  I             G + + GR
Sbjct: 393 GRLQVRGCSNFGGYLKRPQLN--GTDADGWFDTGDLARIDA----------DGYIRISGR 440

Query: 530 AKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AIIVP 576
           +KD +++  GEN+  +E+E    R   I Q+ ++     R G    A +VP
Sbjct: 441 SKD-VIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVP 490

Length = 547

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 83.1 bits (205), Expect = 1e-16
 Identities = 94/396 (23%), Positives = 158/396 (39%), Gaps = 120/396 (30%)

Query: 212 YTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENG--DKFLSMLPPWHVYERACGYFIFS 269
           YTSGTT +PKGV+++H+     + +L  I+  E G    +L  LP +H     C  + F+
Sbjct: 193 YTSGTTADPKGVVISHRGAY--LSTLSAIIGWEMGTCPVYLWTLPMFH-----CNGWTFT 245

Query: 270 RGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRI 329
            G     TA R       R+     ++ P +Y                 + +    +  +
Sbjct: 246 WG-----TAARGGTSVCMRH-----VTAPEIY-----------------KNIEMHNVTHM 278

Query: 330 SFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSA 389
               T F  + +G  L  + +                      P+H+L            
Sbjct: 279 CCVPTVFNILLKGNSLDLSPRSG--------------------PVHVL------------ 306

Query: 390 IGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESS-PVI----------------- 431
                   +GG   P  +    + +G +V   YGLTE++ PV+                 
Sbjct: 307 --------TGGSPPPAALVKKVQRLGFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQM 358

Query: 432 -AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSK--GIVKVRGSQVMQGYFKNPS 488
               R   ++LG         ++ + + ET E +P   K  G + ++GS +M+GY KNP 
Sbjct: 359 ELKARQGVSILGL-------ADVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPK 411

Query: 489 ATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELE 548
           AT +A  + GWLNTGD+G I P           G + ++ R+KD I++S GEN+  +E+E
Sbjct: 412 ATSEAF-KHGWLNTGDVGVIHPD----------GHVEIKDRSKD-IIISGGENISSVEVE 459

Query: 549 EAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEE 580
               +   + +  V+          P A +V +K E
Sbjct: 460 NVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGE 495

Length = 579

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score = 81.9 bits (203), Expect = 2e-16
 Identities = 57/208 (27%), Positives = 90/208 (43%), Gaps = 24/208 (11%)

Query: 56  LEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELL 115
           L ++ L  A+GLR +G+K  + ++L S NS  +     G LA G I        + +EL 
Sbjct: 16  LLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYTPDELA 75

Query: 116 HIYNHSESVALAVENPEFFNRIAETL-CSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYD 174
           H    S+   +  + P+  +++ E        +R I+L     S+    +  E  +    
Sbjct: 76  HQLKISKPKLIFCD-PDELDKVKEAAKELGPVVRIIVL----DSAPDGVLRIEDLLEPRL 130

Query: 175 EIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNL---L 231
              D  R +                     DD A  +Y+SGTTG PKGVML+HKN+   L
Sbjct: 131 GAEDEFRPTPLIDGK---------------DDTAALLYSSGTTGLPKGVMLSHKNIIANL 175

Query: 232 HQIRSLYDIVPAENGDKFLSMLPPWHVY 259
            Q++      P  + D  L+ LP +H Y
Sbjct: 176 SQVQDTLKGNPDSSNDVVLTFLPFYHAY 203

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 82.3 bits (203), Expect = 2e-16
 Identities = 57/171 (33%), Positives = 79/171 (46%), Gaps = 30/171 (17%)

Query: 415 GVKVQVGYGLTESSPV------------IAARRPTCNVLGSVGHPINHTEIKIVDAETNE 462
           GV+VQ  YGLTE S +            IA +        SVG  + + E+K +D +T  
Sbjct: 329 GVQVQEAYGLTEHSCITLTHGDPEKGHGIAKK-------NSVGFILPNLEVKFIDPDTGR 381

Query: 463 VLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGG 522
            LP  + G + VR   VMQGY+ N   T + +DEDGWL+TGDIG+I            G 
Sbjct: 382 SLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDD---------GD 432

Query: 523 VLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAI 573
           + +++ R K+ I    G  V P ELE   L    +    V+       G I
Sbjct: 433 IFIVD-RIKELIKYK-GFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEI 481

Length = 546

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 81.7 bits (202), Expect = 3e-16
 Identities = 55/180 (30%), Positives = 82/180 (45%), Gaps = 31/180 (17%)

Query: 422 YGLTESSPVIAARRPTCNV--------LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVK 473
           +G TE SPV      TC +        LGSVG  I     ++VD   N+V P G  G + 
Sbjct: 323 FGQTEMSPV------TCMLLGEDAIRKLGSVGKVIPTVAARVVDENMNDV-PVGEVGEIV 375

Query: 474 VRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDT 533
            R   +M GY+ NP AT +A    GW ++GD+          R    G V V++ R KD 
Sbjct: 376 YRAPTLMSGYWNNPEATAEAFA-GGWFHSGDL---------VRQDEEGYVWVVD-RKKDM 424

Query: 534 IVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLS 589
           I+ S GEN+   E+E        I ++ VIG+   +    P A+     ++  +  + L+
Sbjct: 425 II-SGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAALTLEDLA 483

Length = 542

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 81.8 bits (203), Expect = 3e-16
 Identities = 57/209 (27%), Positives = 100/209 (47%), Gaps = 31/209 (14%)

Query: 399 GGGSLPMHI-----DLFYEAIGVKVQV--GYGLTESSPVIAARRPTCNVLGSVGHPINHT 451
            G +L   +      +     G ++++  G G+TE++P         +  G++G P    
Sbjct: 342 AGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGPLSRAGNIGLPAPGC 401

Query: 452 EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIG-WIAP 510
           E+K+V        P G K  V+V+G  V  GY++ P  T +A DE+G+  +GD   ++ P
Sbjct: 402 EVKLV--------PVGGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFVDP 453

Query: 511 HH-SRGRSRRCGGVLVLEGRAKDTIVLSTGE--NVEPLELEEAALRSSLIRQIVVIGQDQ 567
               RG        L+ +GR  +   LS+G   +V PL     +  + L++ +V+ G D+
Sbjct: 454 ADPERG--------LMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDR 505

Query: 568 RRPGAIIVPDKEEVLMAAKRLSIVHADAS 596
              G ++ P+    L A +RL+ + ADAS
Sbjct: 506 DEIGLLVFPN----LDACRRLAGLLADAS 530

Length = 614

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 80.9 bits (200), Expect = 5e-16
 Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 19/144 (13%)

Query: 452 EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 511
            ++  D +   +LP G  G +++R   +M+GY  NP AT +AL +DG+  TGD+G     
Sbjct: 360 RVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLG----- 414

Query: 512 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG---QDQR 568
           ++RG      G  V + R  D++ L  G  V P E+E A      +    V+G     + 
Sbjct: 415 YTRGD-----GQFVYQTRMGDSLRLG-GFLVNPAEIEHALEALPGVAAAQVVGATRDGKT 468

Query: 569 RPGAIIVPD-----KEEVLMAAKR 587
            P A ++P       E  LMAA R
Sbjct: 469 VPVAFVIPTDGASPDEAGLMAACR 492

Length = 540

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 81.2 bits (201), Expect = 5e-16
 Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 22/136 (16%)

Query: 445 GHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD 504
           G  +   EI+I + E    LP    G + VRG  +M GYF++  +    L  DGWL+TGD
Sbjct: 388 GKALPGHEIEIRN-EAGMPLPERVVGHICVRGPSLMSGYFRDEESQD-VLAADGWLDTGD 445

Query: 505 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAA-----LRSSLIRQ 559
           +G++             G L + GRAKD I+++ G N+ P ++E  A     LRS     
Sbjct: 446 LGYLL-----------DGYLYITGRAKDLIIIN-GRNIWPQDIEWIAEQEPELRS---GD 490

Query: 560 IVVIGQDQRRPGAIIV 575
                  Q     I++
Sbjct: 491 AAAFSIAQENGEKIVL 506

Length = 579

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 79.3 bits (196), Expect = 1e-15
 Identities = 57/202 (28%), Positives = 85/202 (42%), Gaps = 35/202 (17%)

Query: 397 VSGGGSL-PMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 455
           VS G  L P  ID +  A G+ ++ GYG TE+  ++A         GS+G P     + I
Sbjct: 203 VSAGEPLNPEVIDWWRAATGLPIRDGYGQTETGLLVANFPGMEVKPGSMGRPAPGYRVAI 262

Query: 456 VDAETNEVLPAGSKGIVKVRGSQ----VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 511
           +D E NE LP G +G + VR       + +GY K+P  T+  +    W  TGD       
Sbjct: 263 IDDEGNE-LPPGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATI-RGDWYLTGDRAI---- 316

Query: 512 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG 571
                 +   G     GRA D ++ S+G  + P E+E A +    + +  V+G       
Sbjct: 317 ------KDEDGYFWFVGRADD-VIKSSGYRIGPFEVESALIEHPAVAEAAVVG------- 362

Query: 572 AIIVPDKEEVLMAAKRLSIVHA 593
               PD         R  +V A
Sbjct: 363 ---SPDPV-------RGEVVKA 374

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 80.0 bits (198), Expect = 1e-15
 Identities = 57/212 (26%), Positives = 93/212 (43%), Gaps = 32/212 (15%)

Query: 399 GGGSLPMHI-----DLFYEAIGVKVQV--GYGLTESSPVI-AARRPTCNVLGSVGHPINH 450
            G +LP  +      L     G ++ +  G G TE++P       PT    G +G P   
Sbjct: 297 AGAALPQDVWDRLQALAVRTTGERIPMTSGLGATETAPTATFVHWPTDRS-GVIGLPAPG 355

Query: 451 TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA- 509
           TE+K+V        P G K  V+V+G  V  GY+++P  T +A DE+G+   GD      
Sbjct: 356 TELKLV--------PNGGKLEVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIGDAVRFVD 407

Query: 510 PHH-SRGRSRRCGGVLVLEGRAKDTIVLSTGE--NVEPLELEEAALRSSLIRQIVVIGQD 566
           P    RG        LV +GR  +   L++G   +V  L +   A  + L++  VV G D
Sbjct: 408 PDDPERG--------LVFDGRVAEDFKLASGTWVSVGALRVALVAALAPLVQDAVVAGHD 459

Query: 567 QRRPGAIIVPDKEEVLMAAKRLSIVHADASEL 598
           +   G ++ P+   +    +   +  A A ++
Sbjct: 460 RDEIGLLVFPN---LAACRRLAGLAEASAEDV 488

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 79.7 bits (197), Expect = 1e-15
 Identities = 49/151 (32%), Positives = 75/151 (49%), Gaps = 23/151 (15%)

Query: 441 LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWL 500
           L ++G P+   E+++VD +   VLP    G++++RG  V  GY         A D DGWL
Sbjct: 359 LATLGPPLPGLEVRVVDEDGQ-VLPPRGVGVIELRGESVTPGYL-TMDGFIPAQDADGWL 416

Query: 501 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ- 559
           +TGD+G++             G +V+ GR KD I+++ G N+ P ++E AA R   +R  
Sbjct: 417 DTGDLGYLTE----------EGEVVVCGRVKDVIIMA-GRNIYPTDIERAAARVEGVRPG 465

Query: 560 -IVVIGQD--QRRPG-AIIV-----PDKEEV 581
             V +  D    R G A+ V      D  EV
Sbjct: 466 NAVAVRLDAGHSREGFAVAVESNAFEDPAEV 496

Length = 545

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 79.3 bits (196), Expect = 2e-15
 Identities = 56/221 (25%), Positives = 94/221 (42%), Gaps = 34/221 (15%)

Query: 410 FYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSK 469
           FY A+GV +   YG TE+     A RP     GS G P+    ++ VD E N V P   +
Sbjct: 310 FYSALGVWILDIYGQTETGMGFIAGRPPV-KNGSSGLPLPGYAVRRVDDEGNPVPPGVGE 368

Query: 470 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR 529
            +V++    +   Y+ +P   K+A     +  TGD                 G   L GR
Sbjct: 369 LVVRLPWPGMALTYWNDPERYKEAYFGRWYR-TGDWAERDED----------GYFWLHGR 417

Query: 530 AKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLS 589
           + D I +S G+ + PLE+E   L    + +  V+G           P K ++++A   L+
Sbjct: 418 SDDVIKVS-GKRIGPLEIESVLLAHPAVAEAAVVGVPD--------PGKGQIVLAFVVLA 468

Query: 590 IVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDE 630
               + +EL++         E+R+  ++    IGP  +  +
Sbjct: 469 -AGVEPNELAE---------EIRRHVAR---NIGPHAIPRK 496

Length = 528

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 78.4 bits (194), Expect = 3e-15
 Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 20/154 (12%)

Query: 204 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYE-RA 262
            DD A  ++TSG+ G PKGV+L+H+NLL  I  +  ++     D  L  LP +H +    
Sbjct: 144 PDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTEDVLLGALPLFHAFGLTV 203

Query: 263 CGYFIFSRGIELMY----TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQI----FT 314
                   G+ ++Y       + + + ++ Y+   +   P    T   G  +      F+
Sbjct: 204 TLLLPLLTGLRVVYYPNPLDAKKIAELIRDYKATILCGTP----TFLRGYARNAHPEDFS 259

Query: 315 SSAARRVVA-----RALIRISFAYTAFKRIYEGF 343
           S   R VVA         R  F      RI EG+
Sbjct: 260 S--LRLVVAGAEKLPEATRELFEEKFGIRILEGY 291

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 78.5 bits (194), Expect = 3e-15
 Identities = 49/137 (35%), Positives = 65/137 (47%), Gaps = 23/137 (16%)

Query: 441 LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWL 500
           +G+ G      E++I D E  E LP G  G + V G  V  GY+ NP A  +A   DGW 
Sbjct: 339 IGTCGFERTGMEVQIQDDEGRE-LPPGETGEICVIGPAVFAGYYNNPEANAKAF-RDGWF 396

Query: 501 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQI 560
            TGD+G     H   R     G L + GRA D + +S G NV P E+EE  L    + ++
Sbjct: 397 RTGDLG-----HLDAR-----GFLYITGRASD-MYISGGSNVYPREIEEKLLTHPAVSEV 445

Query: 561 VVIGQDQRRPGAIIVPD 577
            V+G          VPD
Sbjct: 446 AVLG----------VPD 452

Length = 528

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 78.5 bits (194), Expect = 3e-15
 Identities = 60/188 (31%), Positives = 79/188 (42%), Gaps = 36/188 (19%)

Query: 401 GSLPMHIDLFYEAIG----VKVQVGYGLTESSPVIAARRP------TCNVLGSVGHPINH 450
           G+ PM      EAI     +  Q  YG TE+  VI   R           L S G P   
Sbjct: 289 GASPMSPVRLAEAIERFGPIFAQY-YGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPG 347

Query: 451 TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 510
             + ++D +  EV   G  G + VRG  VM GY+  P  T +A   DGWL+TGD+     
Sbjct: 348 LRVALLDEDGREV-AQGEVGEICVRGPLVMDGYWNRPEETAEAF-RDGWLHTGDV----- 400

Query: 511 HHSRGRSRR-CGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR 569
                 +R    G   +  R KD IV + G NV P E+E+       + Q+ VIG     
Sbjct: 401 ------AREDEDGFYYIVDRKKDMIV-TGGFNVFPREVEDVLAEHPAVAQVAVIG----- 448

Query: 570 PGAIIVPD 577
                VPD
Sbjct: 449 -----VPD 451

Length = 524

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 78.1 bits (193), Expect = 5e-15
 Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 28/157 (17%)

Query: 412 EAIGVKVQVGYGLTES---SPVIA----------ARRPTCNVLGSVGHPINHTEIKIVDA 458
           E IG  +   YGLTE+   + V A            R        V +P+    + ++D 
Sbjct: 317 EEIGFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPL-QEGVTVLDP 375

Query: 459 ETNEVLPAGSK--GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR 516
           +T + +PA  +  G +  RG+ VM+GY KNP AT++A    GW +TGD+  + P      
Sbjct: 376 DTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAF-AGGWFHTGDLAVLHPD----- 429

Query: 517 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR 553
                G + ++ R+KD I++S GEN+  +E+E+   R
Sbjct: 430 -----GYIKIKDRSKD-IIISGGENISSIEVEDVLYR 460

Length = 545

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 77.4 bits (191), Expect = 7e-15
 Identities = 59/260 (22%), Positives = 109/260 (41%), Gaps = 36/260 (13%)

Query: 56  LEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELL 115
           L++E+  +   LR +G++ E ++ L   ++  +  A  G +  GA+ V   +  + ++  
Sbjct: 36  LQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTPDDYR 95

Query: 116 HIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDE 175
           +  N S +  L +   E +  +   L     +R +I++ G                SY +
Sbjct: 96  YYLNDSRARVLVIS-EELWEVLKPALQKDPHLRHVIVVGG----------AGPGALSYAQ 144

Query: 176 IIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR 235
           +I    E  +A + S             +DD+A ++Y+SG+TG PKGV+  H ++L    
Sbjct: 145 LIATAAEELEAAATS-------------ADDMAFWLYSSGSTGRPKGVVHLHHDMLVTAE 191

Query: 236 SLY--DIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYTAVRNLKDD----LQR 288
             Y  +++     D   S    +  Y    G YF  S G   +    R   D     ++R
Sbjct: 192 -AYAKNVLGITEDDVVFSAAKLFFAYGLGNGLYFPLSVGATTVLMPERPTPDAVFATIER 250

Query: 289 YQPHYMISVPLVYETLYSGI 308
           Y+P     VP    TLY+ +
Sbjct: 251 YKPTVFFGVP----TLYAAM 266

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 76.6 bits (189), Expect = 1e-14
 Identities = 62/189 (32%), Positives = 83/189 (43%), Gaps = 41/189 (21%)

Query: 412 EAIGVKVQVGYGLTESSPVIAARRPTCNVL-----GSVGHPINHTEIKIVDAETNEVLPA 466
           + +G+ V   YG TE++ V+      C  L     GS+G P+   E+ +VD     V P 
Sbjct: 229 DELGLTVNEFYGQTEANLVVG----NCAALGPARPGSMGKPVPGHEVAVVDDAGRPVPP- 283

Query: 467 GSKGIVKV-RGSQVM-QGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVL 524
           G  G + V R   VM  GY+ NP AT  A     WL TGD+G           R   G L
Sbjct: 284 GEVGEIAVKRPDPVMFLGYWNNPEATA-AKFAGDWLLTGDLG----------RRDADGYL 332

Query: 525 VLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMA 584
             +GRA D I  S+G  + P E+EE  L+   + +  V+G          VPD E     
Sbjct: 333 WFKGRADDVIK-SSGYRIGPAEIEECLLKHPAVLEAAVVG----------VPDPE----- 376

Query: 585 AKRLSIVHA 593
             R  IV A
Sbjct: 377 --RGEIVKA 383

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 76.8 bits (189), Expect = 1e-14
 Identities = 63/204 (30%), Positives = 87/204 (42%), Gaps = 46/204 (22%)

Query: 399 GGGSLPMHIDLFYEAIGV----KVQVGYGLTES----------SPVIAARRPTCNVLGS- 443
           GGGSL     L  +A  +    K+   YG+TE+           P + + + T   +   
Sbjct: 296 GGGSLSS--RLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQT 353

Query: 444 ------------VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATK 491
                       VG P  H E+KI   E++ V      G +  RG  VM GY+   S T 
Sbjct: 354 KSSSVHQPQGVCVGKPAPHVELKIGLDESSRV------GRILTRGPHVMLGYWGQNSETA 407

Query: 492 QALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAA 551
             L  DGWL+TGDIGWI             G L L GR+ D I  + GENV P E+E   
Sbjct: 408 SVLSNDGWLDTGDIGWIDK----------AGNLWLIGRSNDRIK-TGGENVYPEEVEAVL 456

Query: 552 LRSSLIRQIVVIGQDQRRPGAIIV 575
            +   +  +VV+G    R   ++V
Sbjct: 457 SQHPGVASVVVVGVPDSRLTEMVV 480

Length = 563

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 76.2 bits (188), Expect = 1e-14
 Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 24/176 (13%)

Query: 397 VSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAAR-----RPTCNVLGSVGHPINH 450
           VSG  +LP+ + D      G +    YG+TE+   ++ R     RP     G VG P+  
Sbjct: 247 VSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRADGERRP-----GWVGLPLAG 301

Query: 451 TEIKIVDAETNEVLPAG--SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 508
            E ++VD E    +P    + G ++VRG  +  GY   P AT  A   DGW  TGD+  +
Sbjct: 302 VETRLVD-EDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVV 360

Query: 509 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 564
            P           G+  + GR    ++ S G  +   E+E A L    +R+  V+G
Sbjct: 361 DP----------DGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVG 406

Length = 471

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 76.5 bits (188), Expect = 1e-14
 Identities = 58/181 (32%), Positives = 91/181 (50%), Gaps = 26/181 (14%)

Query: 398 SGGGSLPMHIDLFYE-AIGVKVQVGYGLTE------SSPVIAARRPTCNVLGSVGHPINH 450
           SGG  LP+ +  F+E   G+K++ G+G+TE        P     +P     GS+G  +  
Sbjct: 319 SGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKP-----GSIGLMLPG 373

Query: 451 TEIKIVDAE-TNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 509
            E+ +V  +   +VLP G  G +++RG  V +GY+  P  + +A   D +L TGDIG++ 
Sbjct: 374 IELDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFL-TGDIGYMD 432

Query: 510 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQR 568
                       G   L  R KD I+ S G NV P  +E+A      +++++VIG  DQ 
Sbjct: 433 TD----------GYFFLVDRKKDMII-SGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQY 481

Query: 569 R 569
           R
Sbjct: 482 R 482

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 76.1 bits (188), Expect = 2e-14
 Identities = 58/193 (30%), Positives = 87/193 (45%), Gaps = 32/193 (16%)

Query: 422 YGLTESSPVI-------AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV 474
           YG TE +P+          RRP     GS G P+ + E ++VD + N+V   G  G +  
Sbjct: 319 YGQTEIAPLATVLGPEEHLRRP-----GSAGRPVLNVETRVVDDDGNDV-APGEVGEIVH 372

Query: 475 RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTI 534
           R  Q+M GY+ +P  T +A    GW ++GD+G +             G + +  R KD I
Sbjct: 373 RSPQLMLGYWDDPEKTAEAF-RGGWFHSGDLGVMDEE----------GYITVVDRKKDMI 421

Query: 535 VLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMAAKRLSI 590
             + GENV   E+EEA      + ++ VIG    +      A++VP K    +    L I
Sbjct: 422 K-TGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVP-KAGATVTEDEL-I 478

Query: 591 VHADASELSKEKT 603
            H  A  L+  K 
Sbjct: 479 AHCRAR-LAGFKV 490

Length = 523

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 75.5 bits (186), Expect = 3e-14
 Identities = 63/193 (32%), Positives = 88/193 (45%), Gaps = 40/193 (20%)

Query: 408 DLFYEAIGVKVQVGYGLTES-------SPVIAARRPTCNVLGSVGHPINHTEIKIVDAET 460
           D F E  GV++   YG+TE+        P    R P      S+G P    E +I D + 
Sbjct: 305 DAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWP------SIGRPGFCYEAEIRD-DH 357

Query: 461 NEVLPAGSKG---IVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR- 516
           N  LPAG  G   I  V G  + + Y+ +P AT + L+ DGWL+TGD G++      G  
Sbjct: 358 NRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYV---DEEGFF 414

Query: 517 ---SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQRRPGA 572
               RRC             ++   GENV  +ELE        I+ IVV+G +D  R  A
Sbjct: 415 YFVDRRC------------NMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEA 462

Query: 573 I---IVPDKEEVL 582
           I   +V ++ E L
Sbjct: 463 IKAFVVLNEGETL 475

Length = 517

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 74.9 bits (185), Expect = 3e-14
 Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 39/171 (22%)

Query: 412 EAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGI 471
           E  G++   GYGLTE +  + A+R   + L  VG P+   E+K+VD    E+        
Sbjct: 261 EQQGIRCWCGYGLTEMASTVCAKR--ADGLAGVGSPLPGREVKLVD---GEIW------- 308

Query: 472 VKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIG-WIAPHHSRGRSRRCGGVLVLEGRA 530
             +RG+ +  GY++        ++++GW  T D G W              G L + GR 
Sbjct: 309 --LRGASLALGYWRQ-GQLVPLVNDEGWFATRDRGEWQ------------NGELTILGRL 353

Query: 531 KDTIVLSTGENVEPLELEEAALRSSLIRQIVVI-------GQDQRRPGAII 574
            D +  S GE ++P E+E    +  L++Q+ V+       GQ   RP A++
Sbjct: 354 -DNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQ---RPVAVV 400

Length = 458

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 75.2 bits (185), Expect = 4e-14
 Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 38/209 (18%)

Query: 397 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPV--IAARRP---------TCNVLGSVG 445
           V GG ++P  +   +E +GV+V+  +G+TE SP+  +AA +P           +VL   G
Sbjct: 300 VCGGSAMPRSMIKAFEDMGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQG 359

Query: 446 HPINHTEIKIVDAETNEVLPAGSK--GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTG 503
           +P    E+KI D    E LP   K  G +KVRG  V   Y++      + LD+DG+ +TG
Sbjct: 360 YPPFGVEMKITDDAGKE-LPWDGKTFGRLKVRGPAVAAAYYR---VDGEILDDDGFFDTG 415

Query: 504 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVI 563
           D+  I  +          G + +  R+KD I  S GE +  ++LE  A+    + +  VI
Sbjct: 416 DVATIDAY----------GYMRITDRSKDVIK-SGGEWISSIDLENLAVGHPKVAEAAVI 464

Query: 564 GQDQ----RRPGAIIV------PDKEEVL 582
           G        RP  I+         +EE+L
Sbjct: 465 GVYHPKWDERPLLIVQLKPGETATREEIL 493

Length = 542

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 74.5 bits (184), Expect = 4e-14
 Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 15/126 (11%)

Query: 444 VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED---GWL 500
           +G+P       I+D +   V P G +G + + G QV  GY  NP  T +A  +D    W 
Sbjct: 274 IGYPKPGLRALILDEDGRPV-PPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWY 332

Query: 501 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQI 560
            TGD+ ++             G+LV  GR    I L  G  +E  E+E A      + + 
Sbjct: 333 RTGDLVYLED----------DGLLVYLGRKDFQIKLH-GYRIELEEIEAALRALPGVEEA 381

Query: 561 VVIGQD 566
           VV+   
Sbjct: 382 VVLPVP 387

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 74.6 bits (183), Expect = 5e-14
 Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 20/171 (11%)

Query: 412 EAIGVKVQVGYGLTESSPVIAARRPTCNVLGSV--GHPINHTEIKIVDAETNEVLPAGSK 469
           E +G  +   +G+TE+  V            S   G P+   E+K++DA     L  G  
Sbjct: 332 ELLGALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVIDAN-GAKLSQGET 390

Query: 470 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR 529
           G + VRG     GY K P     + D +GW +TGD+ +              G + + GR
Sbjct: 391 GRLLVRGCSNFGGYLKRPHL--NSTDAEGWFDTGDLAFQDAE----------GYIRINGR 438

Query: 530 AKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AIIVP 576
           +KD +++  GEN+  +E+E    +   + Q+ ++     R G    A++VP
Sbjct: 439 SKD-VIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVP 488

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 74.6 bits (184), Expect = 5e-14
 Identities = 63/200 (31%), Positives = 90/200 (45%), Gaps = 28/200 (14%)

Query: 393 SKAGVSGGG-SLPMHI-DLFYEAIGVKVQVGYGLTES-SPVIA--ARRPTCNVLGSVGHP 447
           S   + GGG ++P  + +   E  G+    GYGLTE+ +   +    RP    LG    P
Sbjct: 306 SLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPPDRPKLQCLGI---P 362

Query: 448 INHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-DG--WLNTGD 504
               + +++D ET E LP G  G + V G QV +GY+  P AT +A  E DG  +  TGD
Sbjct: 363 TFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGD 422

Query: 505 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 564
           +G +             G   +  R K  I  S G  V P E+E    +   I++  VI 
Sbjct: 423 LGRMDEE----------GYFFITDRLKRMINAS-GFKVWPAEVENLLYKHPAIQEACVIA 471

Query: 565 -QDQRRPG----AIIVPDKE 579
             D RR G    A++V   E
Sbjct: 472 TPDPRR-GETVKAVVVLRPE 490

Length = 546

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 72.6 bits (178), Expect = 2e-13
 Identities = 65/204 (31%), Positives = 94/204 (46%), Gaps = 37/204 (18%)

Query: 421 GYGLTESSPVIAARRPTCNVL---GSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 477
           GYG+TES+ V   R      L    SVG    + + K+VD  T  +LP G+ G + ++G 
Sbjct: 351 GYGMTESTAV-GTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGP 409

Query: 478 QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLS 537
            VM+GY  NP AT+  +D+DGWL TGDI +              G L +  R K+ I+  
Sbjct: 410 GVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDED----------GYLYIVDRLKE-IIKY 458

Query: 538 TGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE--EVLMAAKRLSIVHADA 595
            G  + P +LE   +    I    V            VPDKE  E+ +A     +V    
Sbjct: 459 KGFQIAPADLEAVLISHPEIIDAAVTA----------VPDKECGEIPVAF----VVRRQG 504

Query: 596 SELSKEKTISLL------YGELRK 613
           S LS+E  I+ +      Y ++RK
Sbjct: 505 STLSQEAVINYVAKQVAPYKKVRK 528

Length = 560

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 73.0 bits (180), Expect = 3e-13
 Identities = 26/57 (45%), Positives = 35/57 (61%)

Query: 201 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 257
           T   DD AT +++SG+ G PKGVML+H N+L  I  + D+    N D  LS LP +H
Sbjct: 778 TFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFH 834

Length = 1146

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score = 71.1 bits (175), Expect = 5e-13
 Identities = 57/259 (22%), Positives = 101/259 (38%), Gaps = 41/259 (15%)

Query: 49  RVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSR 108
           R    ++LE+ +   A GL   G +  + + L S NS  + V    +L+ GA  VV    
Sbjct: 31  RALTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGA--VVTT-- 86

Query: 109 SSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEI 168
                  +       +A  V++            S A +               ++ E++
Sbjct: 87  ------ANPLYTPAEIAKQVKD------------SGAKLAI----------TTSELAEKL 118

Query: 169 PVFSYDEIIDLGR-ESRKAFSDSNDARKHYKYET--IGSDDIATYVYTSGTTGNPKGVML 225
              + + ++ L   +   A  D        +     I  DD+A   Y+SGTTG  KGVML
Sbjct: 119 ASLALEPVVLLDSADDGSAAIDDLLFADEPEPPVVVIKQDDVAALPYSSGTTGRSKGVML 178

Query: 226 THKNLLHQIRSLYDIVP--AENGDKFLSMLPPWHVYERA-CGYFIFSRGIELMYTAVRNL 282
           TH+NL+  +  L        +  D  L +LP +H+Y        +   G  ++     +L
Sbjct: 179 THRNLIANVAQLVAGEGPNFDREDVTLCVLPMFHIYGLTVILLALLRLGATVVVMPRFDL 238

Query: 283 KDDL---QRYQPHYMISVP 298
           +  L   ++Y+  ++  VP
Sbjct: 239 EKFLAAIEKYKVTHLPVVP 257

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 71.7 bits (176), Expect = 5e-13
 Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 40/174 (22%)

Query: 422 YGLTESSPVIAARRPTCNVL---------------GSVGHPINHTEIKIVDAETNEVLPA 466
           YGL ES+  +    P   +                  +G+PI   E++I  +  +     
Sbjct: 310 YGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRI--SPGDGAAGV 367

Query: 467 GSKGI--VKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVL 524
             + I  +++RG+ +M GY          +D D W  TGD+G++             G L
Sbjct: 368 AGREIGEIEIRGASMMSGYLGQAP-----IDPDDWFPTGDLGYLV-----------DGGL 411

Query: 525 VLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ--IVVIGQDQR--RPGAII 574
           V+ GRAK+ I ++ G N+ P E+E  A +   +R+  +V +G  +   RPG +I
Sbjct: 412 VVCGRAKELITVA-GRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVI 464

Length = 525

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 70.8 bits (174), Expect = 8e-13
 Identities = 41/189 (21%), Positives = 70/189 (37%), Gaps = 27/189 (14%)

Query: 46  HRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVR 105
           +  R +   +        A  L  +G+   + +++ + N+   L A  G+   GA+ V  
Sbjct: 25  YGDRRYTYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGAVLVPL 84

Query: 106 GSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIV 165
            +R  ++++  I NHSE+  L V+  EF +   E L                      ++
Sbjct: 85  NTRLDADDIAFILNHSEAKVLFVD-QEFLSLAEEAL---------------------ALL 122

Query: 166 EEIPVFSYDEIIDLGRESRKAFSDSND----ARKHYKYETIGS-DDIATYVYTSGTTGNP 220
               +   + I+           D  D                  D  +  YTSGTTGNP
Sbjct: 123 STKEIIDTEIIVISPAAEDSEEGDYEDLLAGGDPDPLPIPPDDEWDPISLNYTSGTTGNP 182

Query: 221 KGVMLTHKN 229
           KGV+ TH+ 
Sbjct: 183 KGVVYTHRG 191

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 70.0 bits (172), Expect = 1e-12
 Identities = 47/196 (23%), Positives = 74/196 (37%), Gaps = 24/196 (12%)

Query: 64  AEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSES 123
           A  L  +G+K  ++++    NS  + +        GA++V      + EEL +I +HS +
Sbjct: 50  AAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGA 109

Query: 124 VALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRES 183
            A  V+ P         L        I+ L                  +    +D    +
Sbjct: 110 RAFLVD-PALAPTAEAALALLPVDTLILSL------------VLGGREAPGGWLDFADWA 156

Query: 184 RKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA 243
                   D         +  DD+A  +YTSGT   PKG MLTH+ L+ +  S   IV  
Sbjct: 157 EAGSVAEPDVE-------LADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSC--IVAG 207

Query: 244 E--NGDKFLSMLPPWH 257
           +    D  L  LP +H
Sbjct: 208 DMSADDIPLHALPLYH 223

Length = 523

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 69.9 bits (172), Expect = 2e-12
 Identities = 26/56 (46%), Positives = 34/56 (60%)

Query: 202 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 257
              DDIA   YTSG+TG PKGVM+TH NLL  +R++      +  D  +S LP +H
Sbjct: 145 PDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRAIARAFGLDPDDVGVSWLPLYH 200

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 69.2 bits (170), Expect = 2e-12
 Identities = 52/211 (24%), Positives = 88/211 (41%), Gaps = 14/211 (6%)

Query: 55  KLEQEILDFAEGL-RVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEE 113
           +L +E    A  L +  GV+  +++ L+  NS ++++A   +L   A+ V     +  EE
Sbjct: 40  ELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNREEE 99

Query: 114 LLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIIL------LWGKKSSVAPDIVEE 167
           L H    S +   A+   E   ++A        +R +I+      L  +     P  +  
Sbjct: 100 LAHYVTDSGARV-AIVGSELAPKVA-PAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRA 157

Query: 168 IPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTH 227
            P      +  L      A+ ++  A       T G DD+A   YTSGTTG PKG M TH
Sbjct: 158 EP-----PLQALAPGGVVAWKEALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKGCMHTH 212

Query: 228 KNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 258
           + ++           +      L++LP +HV
Sbjct: 213 RTVMANAVGSVLWSNSTPESVVLAVLPLFHV 243

Length = 546

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 69.3 bits (170), Expect = 2e-12
 Identities = 50/187 (26%), Positives = 77/187 (41%), Gaps = 36/187 (19%)

Query: 422 YGLTESSPVIAARRPTCNVLG--SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQV 479
           YG+TE++  IA  +P   + G  S G  + H +I I          A   G + ++   +
Sbjct: 261 YGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIP---------ANQTGNITIQAQSL 311

Query: 480 MQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTG 539
             GY+  P    Q LD  G   T D+G++               L + GR    I ++ G
Sbjct: 312 ALGYY--P----QILDSQGIFETDDLGYLDAQGY----------LHILGRNSQKI-ITGG 354

Query: 540 ENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMAAKRLSIVHADA 595
           ENV P E+E A L + L++ + V+G      G    AI VP    +        +  A  
Sbjct: 355 ENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDPSI----SLEELKTAIK 410

Query: 596 SELSKEK 602
            +LS  K
Sbjct: 411 DQLSPFK 417

Length = 452

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 68.8 bits (169), Expect = 3e-12
 Identities = 54/225 (24%), Positives = 98/225 (43%), Gaps = 29/225 (12%)

Query: 41  ISRRNH-RFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATG 99
           +SR        +  +   + +   A  L  +GVKP ++++  + N+ R L     +   G
Sbjct: 15  VSRTPDGSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLELYFAVPGMG 74

Query: 100 A----INVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWG 155
           A    +N     R S E++ +I NH+E   + V + +F   + E +   A     +    
Sbjct: 75  AVLHTLNP----RLSPEQIAYIINHAEDKVIFV-DDDFL-PLLEAI---APRLPTVKAVV 125

Query: 156 KKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSG 215
                         V++Y+E+++             +    Y++  +  +  A   YTSG
Sbjct: 126 VYDDADMPETSLPNVYAYEELLE-------------EESPEYEWPELDENTAAGLCYTSG 172

Query: 216 TTGNPKGVMLTHKNL-LHQIRS-LYDIVPAENGDKFLSMLPPWHV 258
           TTGNPKGV+ +H++L LH + S L D +     D  L ++P +HV
Sbjct: 173 TTGNPKGVVYSHRSLVLHTLASALPDSLGLSESDTVLPVVPMFHV 217

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 69.0 bits (169), Expect = 3e-12
 Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 18/152 (11%)

Query: 440 VLGSVGHPIN-HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG 498
           ++ + G P++   E+++VDA+ N V P G  G +  RG   ++GY++ P    +A D DG
Sbjct: 356 IIHTQGRPLSPDDEVRVVDADGNPVAP-GEVGELLTRGPYTIRGYYRAPEHNARAFDADG 414

Query: 499 WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIR 558
           +  +GD+            R   G LV+EGR KD I    GE +   E+E   LR   + 
Sbjct: 415 FYRSGDL----------VRRDPDGYLVVEGRVKDQIN-RGGEKIAAEEVENLLLRHPAVH 463

Query: 559 QIVVIG-QDQ---RRPGAIIVPDKEEVLMAAK 586
              ++   D+    +  A IV  KE  L AA+
Sbjct: 464 DAALVAMPDELLGEKSCAFIVV-KEPPLRAAQ 494

Length = 542

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 67.9 bits (167), Expect = 4e-12
 Identities = 26/55 (47%), Positives = 35/55 (63%)

Query: 205 DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVY 259
           DD A   YTSGTTG PKG MLTH+N+L+   S+   +    GD+ L  +P +HV+
Sbjct: 2   DDPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEGDRTLVPVPLFHVF 56

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 68.5 bits (168), Expect = 4e-12
 Identities = 53/185 (28%), Positives = 81/185 (43%), Gaps = 18/185 (9%)

Query: 397 VSGGGSLPMHIDL-FYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 455
           VS G +LP  I   + E  G+++  G G TE   +  + RP     G+ G P+   E+K+
Sbjct: 284 VSAGEALPAEIGYRWKELFGLEILDGIGSTEMLHIFLSNRPGAVKYGTSGKPVPGYEVKL 343

Query: 456 VDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG 515
           VD +  EV   G  G + VRG     GY+     T++      W  TGD           
Sbjct: 344 VDEDGEEV-ADGEIGELWVRGDSSAAGYWNRREKTRETF-VGEWTRTGD----------K 391

Query: 516 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPG 571
             R   G     GR+ D + +S G  V P E+E+A L+   + +  V+G +      +P 
Sbjct: 392 YYRDEDGYYWYCGRSDDMLKVS-GIWVSPFEVEDALLQHPAVLEAAVVGAEDEDGLTKPK 450

Query: 572 AIIVP 576
           A +V 
Sbjct: 451 AFVVL 455

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 68.3 bits (167), Expect = 5e-12
 Identities = 63/195 (32%), Positives = 90/195 (46%), Gaps = 25/195 (12%)

Query: 415 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVD--AETNEVLPAGSKG-I 471
           G KV + YG TE+   +  R P     G+   P   +E++IV      +E LP G +G +
Sbjct: 295 GEKVNI-YGTTEAMNSLYMRDPRT---GTEMRPGFFSEVRIVRIGGSPDEALPNGEEGEL 350

Query: 472 VKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAK 531
           V         GY   P AT + L +DGW  T D+  + P           G + + GR  
Sbjct: 351 VVAAADATFTGYLNQPQATAEKL-QDGWYRTSDVAVVDPS----------GTVRILGRVD 399

Query: 532 DTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMAAKR 587
           D I+ S GEN+ P E+E    R+  + ++VVIG    R G    A +VP + E L +A  
Sbjct: 400 DMII-SGGENIHPSEVERVLGRAPGVTEVVVIGLPDERWGQSVTACVVPREGETL-SADA 457

Query: 588 LSIVHADASELSKEK 602
           L      ASEL+  K
Sbjct: 458 LDTF-CRASELADFK 471

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 67.9 bits (166), Expect = 7e-12
 Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 14/119 (11%)

Query: 455 IVDAETNEVLPAGSK--GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 512
           +VD +T + +PA  K  G + +RG+ VM+GY KNP A ++A   +GW ++GD+G   P  
Sbjct: 386 VVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAF-ANGWFHSGDLGVKHPD- 443

Query: 513 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG 571
                    G + ++ R+KD I++S GEN+  LE+E        + +  V+ +   R G
Sbjct: 444 ---------GYIEIKDRSKD-IIISGGENISSLEVENVVYTHPAVLEASVVARPDERWG 492

Length = 567

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 67.3 bits (165), Expect = 9e-12
 Identities = 48/225 (21%), Positives = 85/225 (37%), Gaps = 37/225 (16%)

Query: 27  FTRNCVDAVATRIRISRR-------NHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLS 79
              N +D      R           +  FR      L +E+   A  L+ +G    ++++
Sbjct: 10  LALNALDRHLEADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGVKGDRVA 69

Query: 80  LFSDNSCRWLVADQGMLAT---GAINVVRGSRSSSEELLHIYNHSESVALAVENPEFFNR 136
           ++  NS   ++A   +LAT   GAI  V     S+E +           L + +   F  
Sbjct: 70  IYMPNSPEAVIA---LLATARIGAIPAVVSPGLSAEAVADRIADLGPKVL-IADDGTFRN 125

Query: 137 IAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKH 196
                      + I LL    + ++  +V       YDE ++              A + 
Sbjct: 126 G----------KEIALLEDADAVLSSVVVVPRLGLWYDEAVE-------------KASEK 162

Query: 197 YKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIV 241
           +++E + +DD    +YTSGTTG PKG++ +H   L + R      
Sbjct: 163 FEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFH 207

Length = 528

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 67.1 bits (164), Expect = 1e-11
 Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 22/116 (18%)

Query: 421 GYGLTESSPVIA------ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV 474
           GYG TE SPVI        +  +C     VG PI   ++ IV  ET   + +G  G+V  
Sbjct: 331 GYGTTECSPVITINTVNSPKHESC-----VGMPIRGMDVLIVSEETKVPVSSGETGLVLT 385

Query: 475 RGSQVMQGYFKN-PSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR 529
           RG+ +  GY           L  + W  TGD+G++  H          G L L+GR
Sbjct: 386 RGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRH----------GELFLKGR 431

Length = 539

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 5/104 (4%)

Query: 206 DIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACG- 264
           D A  +YTSGTTG PKGV+L+H+NLL   ++L   +    GD  LS+LP +HV     G 
Sbjct: 1   DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGL 60

Query: 265 YFIFSRGIEL-MYTAVRNLKD---DLQRYQPHYMISVPLVYETL 304
                 G  + +Y            +++Y+   +  VP +Y+ L
Sbjct: 61  LGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDAL 104

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 66.4 bits (163), Expect = 2e-11
 Identities = 53/198 (26%), Positives = 83/198 (41%), Gaps = 43/198 (21%)

Query: 56  LEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLAT---GAI--NVVRGSRSS 110
             +E+   A+GL  +G++  +++ +++ N   W++      AT   GAI   +    R S
Sbjct: 49  FNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLT---QFATAKIGAILVTINPAYRLS 105

Query: 111 SEELLHIYNHSESVALAVEN---------------PEFFNRIAETLCSKA--AMRFIILL 153
             EL +  N S   AL   +               PE        L S     +R +I L
Sbjct: 106 --ELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFL 163

Query: 154 WGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYT 213
             +K            + ++DE++ LGR         +DA    +  T+  DD     YT
Sbjct: 164 GDEKHP---------GMLNFDELLALGR-------AVDDAELAARQATLDPDDPINIQYT 207

Query: 214 SGTTGNPKGVMLTHKNLL 231
           SGTTG PKG  LTH+N+L
Sbjct: 208 SGTTGFPKGATLTHRNIL 225

Length = 559

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score = 66.1 bits (162), Expect = 2e-11
 Identities = 26/53 (49%), Positives = 30/53 (56%)

Query: 206 DIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 258
           D A  +YTSGTTG PKGV+LTH NL    R+L +       D  L  LP  HV
Sbjct: 89  DPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWTASDVLLHALPLHHV 141

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 66.6 bits (163), Expect = 2e-11
 Identities = 46/172 (26%), Positives = 68/172 (39%), Gaps = 35/172 (20%)

Query: 422 YGLTESSPVI------AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 475
           YG TES  V       A   P     G+VG      E++ VD +    LP G  G +  R
Sbjct: 303 YGSTESGAVTFATSEDALSHP-----GTVGKAAPGAELRFVDEDGRP-LPQGEIGEIYSR 356

Query: 476 GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIV 535
            +      + N    +  +D  G++ +GD+G++             G L L  R +D +V
Sbjct: 357 IAGNPDFTYHNKPEKRAEIDRGGFITSGDVGYLDAD----------GYLFLCDRKRD-MV 405

Query: 536 LSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE--EVLMAA 585
           +S G N+ P E+E        +    V G          +PD E  E LMA 
Sbjct: 406 ISGGVNIYPAEIEAVLHAVPGVHDCAVFG----------IPDAEFGEALMAV 447

Length = 509

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 65.7 bits (161), Expect = 3e-11
 Identities = 53/195 (27%), Positives = 78/195 (40%), Gaps = 37/195 (18%)

Query: 421 GYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVM 480
           G G+T  +       P     GSVG  +   E++I+D + NE LP G  G V        
Sbjct: 299 GGGVTVITSEDWLAHP-----GSVGKAV-LGEVRILDEDGNE-LPPGEIGTVYFEMDGYP 351

Query: 481 QGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGE 540
             Y  +P  T  A +  GW+  GD+G++             G L L  R  D I+ S G 
Sbjct: 352 FEYHNDPEKTAAARNPHGWVTVGDVGYLDED----------GYLYLTDRKSDMII-SGGV 400

Query: 541 NVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVH-ADASELS 599
           N+ P E+E   +    +  + V G          VPD+E   M  +  ++V  AD ++  
Sbjct: 401 NIYPQEIENLLVTHPKVADVAVFG----------VPDEE---MGERVKAVVQPADGADAG 447

Query: 600 KEKTISLLYGELRKW 614
                  L  EL  W
Sbjct: 448 DA-----LAAELIAW 457

Length = 502

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 66.0 bits (161), Expect = 3e-11
 Identities = 50/209 (23%), Positives = 90/209 (43%), Gaps = 17/209 (8%)

Query: 46  HRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVR 105
           H  R    + L + +L  A GLR +G+   E+++++ D     + A  G    G + V  
Sbjct: 21  HHDRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPI 80

Query: 106 GSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIV 165
                +E++ HI     +V L V + E  + +   L     +R +I++         D  
Sbjct: 81  NPLLKAEQVAHILADC-NVRLLVTSSERLDLLHPALPGCHDLRTLIIV--------GDPA 131

Query: 166 EEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVML 225
                   +E         K  +  +    H     +   D+A  +YTSG+TG PKGV+L
Sbjct: 132 HASEGHPGEEPASW----PKLLALGDADPPH----PVIDSDMAAILYTSGSTGRPKGVVL 183

Query: 226 THKNLLHQIRSLYDIVPAENGDKFLSMLP 254
           +H+NL+   +S+   +     D+ L++LP
Sbjct: 184 SHRNLVAGAQSVATYLENRPDDRLLAVLP 212

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 65.7 bits (161), Expect = 3e-11
 Identities = 57/188 (30%), Positives = 79/188 (42%), Gaps = 43/188 (22%)

Query: 422 YGLTE-SSPVIA-----ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 475
           YG TE +   IA     A  P       VG P     +KI+D   NEV P G  G + V 
Sbjct: 355 YGSTEVAFATIATPEDLAEAPGT-----VGRPPKGVTVKILDENGNEV-PRGVVGRIFVG 408

Query: 476 GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIV 535
                +GY       KQ    DG L++GD+G+              G+L ++GR  D IV
Sbjct: 409 NGFPFEGY--TDGRDKQI--IDGLLSSGDVGYFDED----------GLLFVDGRDDDMIV 454

Query: 536 LSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLS--IVHA 593
            S GENV P E+E+       + +  VIG          V D+E      +RL   +V A
Sbjct: 455 -SGGENVFPAEVEDLLAGHPDVVEAAVIG----------VDDEE----FGQRLRAFVVKA 499

Query: 594 DASELSKE 601
             + L ++
Sbjct: 500 PGAALDED 507

Length = 549

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 64.8 bits (158), Expect = 6e-11
 Identities = 44/149 (29%), Positives = 65/149 (43%), Gaps = 24/149 (16%)

Query: 422 YGLTESSPVIA------ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 475
           YG +E S V A       RRP      SVG P ++ +++I +    EV   G  G V V+
Sbjct: 286 YGASELSFVTALVDEESERRPN-----SVGRPFHNVQVRICNEAGEEVQK-GEIGTVYVK 339

Query: 476 GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIV 535
             Q   GY        + L+ DGW+   D+G+              G + + GR K+ I+
Sbjct: 340 SPQFFMGY-IIGGVLARELNADGWMTVRDVGYEDEE----------GFIYIVGREKNMIL 388

Query: 536 LSTGENVEPLELEEAALRSSLIRQIVVIG 564
              G N+ P E+E        + +IVVIG
Sbjct: 389 FG-GINIFPEEIESVLHEHPAVDEIVVIG 416

Length = 487

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 64.4 bits (157), Expect = 8e-11
 Identities = 58/185 (31%), Positives = 81/185 (43%), Gaps = 26/185 (14%)

Query: 397 VSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPV-IAAR----RPTCNVLGSVGHPINH 450
           VS G +LP  +   +YE  G+K+  G G TE   + I+A     +P     G+ G P+  
Sbjct: 267 VSAGETLPAKVWQDWYERTGLKIIDGIGATEMLHIFISANEENAKP-----GATGKPVPG 321

Query: 451 TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 510
            E +IVD + NEV P G  G + VRG    + Y  +    +Q    DGW  TGDI     
Sbjct: 322 YEARIVDDQGNEV-PRGEAGRLAVRGPTGCR-YLDDER--QQEYVRDGWNVTGDIFRQDE 377

Query: 511 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRP 570
                      G      R+ D IV S G N+   E+E+A L    + +  VIG      
Sbjct: 378 D----------GYFHYVARSDDMIV-SAGYNIAAPEVEDALLTHPDVAECAVIGVPDEER 426

Query: 571 GAIIV 575
           G I+ 
Sbjct: 427 GQIVC 431

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 64.4 bits (157), Expect = 8e-11
 Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 30/201 (14%)

Query: 408 DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAG 467
           + F E  G+K+  G+G TE++  IA         GS+G P    +I I+D +       G
Sbjct: 319 NTFKEKTGIKLMEGFGQTETTLTIATFPWMEPKPGSMGKPSPGYDIDIIDPDGKSC-EVG 377

Query: 468 SKGIVKVRGSQ-----VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGG 522
            +G + +R S      +  GY+++P  T +    DG+ +TGD  W              G
Sbjct: 378 EEGEIVIRTSDGKPLGLFMGYYRDPERTAEVW-HDGYYHTGDTAW----------MDEDG 426

Query: 523 VLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPD--KEE 580
            L   GRA D ++ S+G  + P E+E A ++   + +  V G          VPD  + +
Sbjct: 427 YLWFVGRADD-LIKSSGYRIGPFEVESALIQHPAVLECAVTG----------VPDPIRGQ 475

Query: 581 VLMAAKRLSIVHADASELSKE 601
           V+ A   L+  +  + EL KE
Sbjct: 476 VVKATIVLTKGYEPSEELKKE 496

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 64.0 bits (156), Expect = 1e-10
 Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 17/142 (11%)

Query: 445 GHPIN-HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTG 503
           G P++   E+++VD   N V P G  G++  RG    +GY+K P     A D +G+  TG
Sbjct: 354 GRPMSPDDEVRVVDDHGNPVAP-GETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTG 412

Query: 504 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR-SSLIRQIVV 562
           D+  + P           G +V+ GRAKD I    GE +   E+E   L   ++    +V
Sbjct: 413 DLVRLTPE----------GYIVVVGRAKDQIN-RGGEKIAAEEIENLLLAHPAVHDAALV 461

Query: 563 IGQDQ---RRPGAIIVPDKEEV 581
              D+    +  A IV     +
Sbjct: 462 SMPDELLGEKSCAFIVVRDPAL 483

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 64.0 bits (156), Expect = 1e-10
 Identities = 48/162 (29%), Positives = 67/162 (41%), Gaps = 18/162 (11%)

Query: 394 KAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEI 453
           +  +  G    +H   F E  GV +  GYG TE++ VIA    +    GS+G      E 
Sbjct: 297 RVALGPGVPAALHAA-FRERFGVDLLDGYGSTETNFVIAVTHGSQRP-GSMGRLAPGFEA 354

Query: 454 KIVDAETNEVLPAGSKGIVKVRGSQ---VMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 510
           ++VD    E LP G  G + +R  +      GYF  P  T +A   + W +TGD      
Sbjct: 355 RVVDEHDQE-LPDGEPGELLLRADEPFAFATGYFGMPEKTVEAW-RNLWFHTGDRV---- 408

Query: 511 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAAL 552
                  R   G      R KD I    GEN+   E+E+  L
Sbjct: 409 ------VRDADGWFRFVDRIKDAI-RRRGENISSFEVEQVLL 443

Length = 542

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score = 62.7 bits (153), Expect = 3e-10
 Identities = 71/296 (23%), Positives = 126/296 (42%), Gaps = 52/296 (17%)

Query: 64  AEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIY-NHSE 122
           A GLR +GV+P +++++   N  + +VA   +L  GA+ V      ++ EL H + +H  
Sbjct: 71  AAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFEDHGA 130

Query: 123 SVALAVENPEFFNRIA---ETLCSKAAMRFIILLWGKKSSVAPDIVEEIPV---FSYDEI 176
            VA+       ++++A   E L     +  I         V+ +++  +P+    +    
Sbjct: 131 RVAIV------WDKVAPTVERLRRTTPLETI---------VSVNMIAAMPLLQRLALRLP 175

Query: 177 IDLGRESRKAFSDS---------------NDARKHYKYETIGSDDIATYVYTSGTTGNPK 221
           I   R++R A +                         +     DD+A  +YTSGTTG PK
Sbjct: 176 IPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPK 235

Query: 222 GVMLTHKNLLHQIRSLYDIVP--AENGDKFLSMLPPWHVYERA-CGYFIFSRGIELMYTA 278
           G  LTH+NL          VP   +  ++ L+ LP +H Y    C     S G EL+   
Sbjct: 236 GAQLTHRNLFANAAQGKAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLP 295

Query: 279 ---VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISF 331
              +  + D ++++ P ++  VP +YE +           +A  R V  + +R +F
Sbjct: 296 APDIDLILDAMKKHPPTWLPGVPPLYEKI---------AEAAEERGVDLSGVRNAF 342

Length = 573

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 62.4 bits (152), Expect = 3e-10
 Identities = 66/240 (27%), Positives = 99/240 (41%), Gaps = 41/240 (17%)

Query: 397 VSGGGSL-PMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 455
           VS G  L P  I+   +A G+ ++ GYG TE++ +I          GS+G P+    + +
Sbjct: 205 VSAGEPLNPEVIERVKKAWGLTIRDGYGQTETTAMIGNSPGQKVKPGSMGRPLPGYRVVL 264

Query: 456 VDAETNEVLPAGSKGIVKV--RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHS 513
           +D E  E+     +  + +  R   +M GY  +P  T  A    G+  TGD         
Sbjct: 265 LDDEGKEIPVTEGEIALDLGDRPIGLMLGYMGDPEKTAAAFR-GGYYRTGDKA------- 316

Query: 514 RGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ-DQRR--- 569
               R   G L   GRA D +  S+   + P E+E A L    + +  V+   D  R   
Sbjct: 317 ---YRDEDGYLWFVGRADD-VFKSSDYRISPFEVESALLEHPAVAEAAVVPSPDPIRLAV 372

Query: 570 PGAIIV------PDKE----------EVLMAAKRLSIVHADASELSKEKTISLLYGELRK 613
           P A IV      P +E          E L   KR+  +     EL   KTIS   G++R+
Sbjct: 373 PKAYIVLKPGYEPSRELALELFAHVRERLAPYKRIRRI-EFVGELP--KTIS---GKIRR 426

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 61.9 bits (151), Expect = 4e-10
 Identities = 26/54 (48%), Positives = 35/54 (64%)

Query: 204 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 257
            DDIA   ++SG+TG PKGV+LTHKNLL  I ++ +     + D FLS +P  H
Sbjct: 105 PDDIAFIQFSSGSTGEPKGVILTHKNLLTNIEAIIEAAEITSEDVFLSWMPLTH 158

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 61.7 bits (150), Expect = 6e-10
 Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 20/139 (14%)

Query: 445 GHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD 504
           G P   TEI+I+D +  E +P G  G + VR      GY     +TK     DG++ +GD
Sbjct: 368 GRPAEGTEIRILDQDFRE-VPTGEVGTIFVRNDTQFDGY--TSGSTKDF--HDGFMASGD 422

Query: 505 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 564
           +G++      GR       L + GR  + IV S GENV P+E+E+       + +  VIG
Sbjct: 423 VGYL---DENGR-------LFVVGRDDEMIV-SGGENVYPIEVEKTLATHPDVAEAAVIG 471

Query: 565 QDQRRPG----AIIVPDKE 579
            D  + G    A +V    
Sbjct: 472 VDDEQYGQRLAAFVVLKPG 490

Length = 537

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 59.9 bits (146), Expect = 1e-09
 Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 11/77 (14%)

Query: 204 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC 263
            DD+A  +YTSG+TG PKGVML+H+NL    RS+   +     D+ L++LP         
Sbjct: 1   DDDLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDDRILAVLP--------- 51

Query: 264 GYFIFSRGIELMYTAVR 280
             F F  G+  + TA R
Sbjct: 52  --FSFDYGLSQLLTAFR 66

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 60.7 bits (148), Expect = 1e-09
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 203 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERA 262
           G+DD+A  +YTSGTTG  KG ML+H NLL    +L D       D  +  LP +H +   
Sbjct: 154 GADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTH--- 210

Query: 263 CGYFIFSRGI 272
            G F+ +   
Sbjct: 211 -GLFVATNVA 219

Length = 504

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 61.1 bits (149), Expect = 1e-09
 Identities = 34/133 (25%), Positives = 53/133 (39%), Gaps = 33/133 (24%)

Query: 415 GVKVQVGYGLTESSPV--IAARRPTCNVLGS------------VGHPINHTEIKIVDAET 460
             ++   YG TE+ P+  I +R     +L +            VG P++  E++I+    
Sbjct: 315 DAEILTPYGATEALPISSIESR----EILFATRAATDNGAGICVGRPVDGVEVRIIAISD 370

Query: 461 N--------EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQA--LDEDG--WLNTGDIGWI 508
                      L  G  G + V G  V + Y+  P AT+ A   D  G  W   GD+G++
Sbjct: 371 APIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYL 430

Query: 509 APHHSRGRSRRCG 521
                 GR   CG
Sbjct: 431 DAQ---GRLWFCG 440

Length = 552

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 61.0 bits (148), Expect = 1e-09
 Identities = 64/223 (28%), Positives = 94/223 (42%), Gaps = 47/223 (21%)

Query: 400 GGSL--PMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLG--------SVGHPIN 449
           GGS   P+ I  + E  GV V   +G+TE+SPV    RP   V G        S G    
Sbjct: 306 GGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPA 365

Query: 450 HTEIKIVDAETNEVLPAGSK--GIVKVRGSQVMQGYFKNPSAT----------------K 491
             E +IV+    +V+ +  +  G ++VRG+ V   Y+ +P+                   
Sbjct: 366 SLEYRIVN--DGQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDAN 423

Query: 492 QALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAA 551
                DGWL TGD+G +             G L +  RA+D I  S GE +   +LE   
Sbjct: 424 DRFTADGWLRTGDVGSVTRD----------GFLTIHDRARDVI-RSGGEWIYSAQLENYI 472

Query: 552 LRSSLIRQIVVIG-QDQR---RPGAIIV--PDKEEVLMAAKRL 588
           + +  + +  VIG  D +   RP A+ V  P  E     A+RL
Sbjct: 473 MAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPTRETAERL 515

Length = 576

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 60.8 bits (147), Expect = 1e-09
 Identities = 66/231 (28%), Positives = 100/231 (43%), Gaps = 31/231 (13%)

Query: 342 GFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYK-KIQSAIGISKAGVSGG 400
           G C+T  +   S L  L       +    L P   L  KLV + K  +A   S   V  G
Sbjct: 240 GLCVTGGENTTSLLEILTT---NAVATTCLVPT--LLSKLVSELKSANATVPSLRLVGYG 294

Query: 401 GSLPMHIDL-FYEAIGVKVQVGYGLTESSPVIAARRPTCN------VLGSVGHPINHTEI 453
           GS  +  D+ F EA GV+    YGL+E+    A   PT +        G+VG P    ++
Sbjct: 295 GSRAIAADVRFIEATGVRTAQVYGLSETG-CTALCLPTDDGSIVKIEAGAVGRPYPGVDV 353

Query: 454 KIVDAE-----TNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 508
            +   +          P+ S G + ++    M GY+ NP  T + L  DGW+NTGD+   
Sbjct: 354 YLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL-IDGWVNTGDL--- 409

Query: 509 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ 559
                    RR  G   ++GR+ + I+   G N+ P E++  A   S +R+
Sbjct: 410 -------LERREDGFFYIKGRSSEMII-CGGVNIAPDEVDRIAEGVSGVRE 452

Length = 540

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 60.1 bits (147), Expect = 2e-09
 Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 2/48 (4%)

Query: 204 SDDIATYV-YTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFL 250
            DD+A YV YTSG+TG PKGVM+ H+ L++ +  L +      GD+ L
Sbjct: 92  PDDLA-YVIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYGLTAGDRVL 138

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 59.6 bits (145), Expect = 2e-09
 Identities = 20/49 (40%), Positives = 32/49 (65%)

Query: 203 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLS 251
           G DD+A  +YTSG+TG PKGV++TH++L++ +  L      +  D+ L 
Sbjct: 118 GPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQ 166

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 22/54 (40%), Positives = 28/54 (51%)

Query: 205 DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 258
           DD+A   YTSGTTG PKG M TH+ +L    +             L+ LP +HV
Sbjct: 84  DDVAVIPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLTPDSVLLAFLPLFHV 137

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 59.2 bits (144), Expect = 3e-09
 Identities = 22/50 (44%), Positives = 33/50 (66%)

Query: 201 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFL 250
           T   DD A  +YTSG+TG PKGV++TH+N+ + +R+   I+    GD+ L
Sbjct: 95  TSSPDDPAYVIYTSGSTGKPKGVVITHRNICNFLRAEGAILGIRPGDRVL 144

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 59.0 bits (143), Expect = 3e-09
 Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 31/203 (15%)

Query: 407 IDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVL--GSVGHPINHTEIKIVDAETNEVL 464
           +  F   +GV +   YG TE+   +       + +  GS+G P+    I ++D +   + 
Sbjct: 222 VRWFQANLGVTIHDHYGQTETGMPVGNHHALAHEVRAGSMGLPLPGYRIAVLDDDGQPLA 281

Query: 465 PAGSKGIVKVRGSQ----VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRC 520
             G  G + +  +        GY+ +P  T + +    W  TGD+            R  
Sbjct: 282 D-GEPGQLAIDVASSPLLWFSGYWDDPEKTAELIA-GRWYVTGDLV----------ERDE 329

Query: 521 GGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPD--K 578
            G     GRA D I+ S G  + P ++E A L    + +  V+G          VPD  +
Sbjct: 330 DGYFWFIGRADDVII-SAGYRIGPFDVESALLEHPAVAEAAVVG----------VPDPLR 378

Query: 579 EEVLMAAKRLSIVHADASELSKE 601
            E++ A   L   +A + EL++E
Sbjct: 379 GEIVKAFVVLKEGYAGSDELAEE 401

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 58.8 bits (143), Expect = 5e-09
 Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 10/65 (15%)

Query: 202 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAEN-------GDKFLSMLP 254
           I  DD+    Y+SGTTG PKGVMLTHK L   + S+   V  EN        D  L +LP
Sbjct: 176 ISPDDVVALPYSSGTTGLPKGVMLTHKGL---VTSVAQQVDGENPNLYFHSDDVILCVLP 232

Query: 255 PWHVY 259
            +H+Y
Sbjct: 233 MFHIY 237

Length = 537

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 58.9 bits (143), Expect = 5e-09
 Identities = 49/200 (24%), Positives = 87/200 (43%), Gaps = 19/200 (9%)

Query: 63  FAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSE 122
           FA  LR  GV   +++++F  N  ++ +   G+L  GA++V         EL +  N + 
Sbjct: 71  FAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAG 130

Query: 123 SVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRE 182
           +  L   +      + E + ++ ++R +I      +S+A D++   P      + D  R 
Sbjct: 131 AEVLLALDQ--LAPVVEQVRAETSLRHVI-----VTSLA-DVLPAEPTL---PLPDSLRA 179

Query: 183 SRKAFSDSNDARKHYKYETIGS-------DDIATYVYTSGTTGNPKGVMLTHKNLLHQIR 235
            R A + + D     +  T          D +A   YT GTTG PKG   T +++++   
Sbjct: 180 PRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAA 239

Query: 236 SLYDI-VPAENGDKFLSMLP 254
           + Y + V       FLS LP
Sbjct: 240 AAYAVAVVGGEDSVFLSFLP 259

Length = 567

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 58.5 bits (142), Expect = 6e-09
 Identities = 61/268 (22%), Positives = 106/268 (39%), Gaps = 39/268 (14%)

Query: 49  RVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSR 108
           R +   +L +EI   A     +G++  +K++L  DN   ++    G+   GAI V   +R
Sbjct: 36  RRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINAR 95

Query: 109 SSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEI 168
              EE   I  +S+  +L V + +F+    +     A     I L        P      
Sbjct: 96  LLREESAWILQNSQ-ASLLVTSAQFYPMYRQIQQEDATPLRHICLTR---VALPAD---- 147

Query: 169 PVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHK 228
                D +    +   +  +    A        + +DD A  ++TSGTT  PKGV++TH 
Sbjct: 148 -----DGVSSFTQLKAQQPATLCYAP------PLSTDDTAEILFTSGTTSRPKGVVITHY 196

Query: 229 NLLH-------QIRSLYDIVPAENGDKFLSMLPPWHV-YERACGYFIFSRGIELM----Y 276
           NL         Q     D       D +L+++P +H+  +       FS G   +    Y
Sbjct: 197 NLRFAGYYSAWQCALRDD-------DVYLTVMPAFHIDCQCTAAMAAFSAGATFVLLEKY 249

Query: 277 TAVRNLKDDLQRYQPHYMISVPLVYETL 304
           +A R     + +Y+      +P++  TL
Sbjct: 250 SA-RAFWGQVCKYRATITECIPMMIRTL 276

Length = 517

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 58.3 bits (141), Expect = 7e-09
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 203 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYE-R 261
             +D+A  ++TSGT   PKGV LTH NLL   R+       +  D  +S LPP+H Y   
Sbjct: 181 DPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGFN 240

Query: 262 ACGYFIFSRGIELMYT 277
           +C  F    G+ +++ 
Sbjct: 241 SCTLFPLLSGVPVVFA 256

Length = 539

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score = 56.7 bits (138), Expect = 1e-08
 Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 2/54 (3%)

Query: 205 DDIATYVYTSGTTGNPKGVMLTHKNLL-HQIRSLYDIVPAENGDKFLSMLPPWH 257
           DD A  +YTSGTTG PKGVMLTH+NLL + + +L  +  +  GD +L   P +H
Sbjct: 1   DDPALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSP-GDVYLLAAPLYH 53

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 10/108 (9%)

Query: 204 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYER-A 262
            DD+A Y +T GTTG PK    +H+N +        +     GD  L+ LP +HV     
Sbjct: 1   PDDLAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPGDVLLNGLPLFHVGGAIV 60

Query: 263 CGYFIFSRGIELMY---------TAVRNLKDDLQRYQPHYMISVPLVY 301
            G    +RG  ++            V N    ++RY+   + +VP V 
Sbjct: 61  TGLAPLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVL 108

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 57.6 bits (139), Expect = 1e-08
 Identities = 51/178 (28%), Positives = 77/178 (43%), Gaps = 28/178 (15%)

Query: 412 EAIGVKVQVGYGLTESSPVIAARR---------PTCNVLGSVGHPINHTEIKIVDAETNE 462
                 V   +G+TE++  +   +         P  +  G VG      +I+IV ++   
Sbjct: 317 TEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVST-GLVGRSTG-AQIRIVGSDGLP 374

Query: 463 VLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGG 522
            LPAG+ G V +RG+ V++GY  +P+ T      DGWL TGD+G          S    G
Sbjct: 375 -LPAGAVGEVWLRGTTVVRGYLGDPTITAANF-TDGWLRTGDLG----------SLSAAG 422

Query: 523 VLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ-DQ---RRPGAIIVP 576
            L + GR K+ I    GE + P  +E        + +  V G  DQ       A+IVP
Sbjct: 423 DLSIRGRIKELINRG-GEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVP 479

Length = 534

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 57.9 bits (140), Expect = 1e-08
 Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 15/112 (13%)

Query: 440 VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-DG 498
           VL S G       + IVD ++ EVL     G +   G  +  GY++NP A+ +   E DG
Sbjct: 368 VLMSCGRSQPGHAVLIVDPQSLEVLGDNRVGEIWASGPSIAHGYWRNPEASAKTFVEHDG 427

Query: 499 --WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELE 548
             WL TGD+G++         R   G L + GR KD +++  G N+ P ++E
Sbjct: 428 RTWLRTGDLGFL---------RD--GELFVTGRLKDMLIVR-GHNLYPQDIE 467

Length = 4334

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 57.1 bits (138), Expect = 2e-08
 Identities = 43/152 (28%), Positives = 76/152 (50%), Gaps = 17/152 (11%)

Query: 110 SSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKK-SSVAPDIVEEI 168
            +++++HI NH+E   + V +P    ++ E L     +R ++ +      S A  + E I
Sbjct: 99  MNDQIVHIINHAEDEVI-VADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGI 157

Query: 169 PVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHK 228
            V+SY+ ++D GR +             Y +  +     A   Y++GTTG PKGV+ +H+
Sbjct: 158 KVYSYEALLD-GRST------------VYDWPELDETTAAAICYSTGTTGAPKGVVYSHR 204

Query: 229 NLLHQIRSLY--DIVPAENGDKFLSMLPPWHV 258
           +L  Q  SL   D +   +G+ FL  +P +HV
Sbjct: 205 SLYLQSLSLRTTDSLAVTHGESFLCCVPIYHV 236

Length = 576

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 57.3 bits (139), Expect = 2e-08
 Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 18/119 (15%)

Query: 409  LFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGS 468
             + E  G+++  GYG+TE++PVIA   P  N  G+VG  +   E ++        +  G 
Sbjct: 926  TWMEKFGIRILEGYGVTETAPVIALNTPMHNKAGTVGRLLPGIEYRLEPVPG---IDEG- 981

Query: 469  KGIVKVRGSQVMQGYFK--NPSATKQALDEDGWLNTGDI------GWIAPHHSRGRSRR 519
             G + VRG  VM GY +  NP   +     DGW +TGDI      G+I     +GR++R
Sbjct: 982  -GRLFVRGPNVMLGYLRAENPGVLEPP--ADGWYDTGDIVTIDEEGFIT---IKGRAKR 1034

Length = 1140

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score = 55.7 bits (135), Expect = 3e-08
 Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 6/58 (10%)

Query: 204 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL---YDIVPAENGDKFLSMLPPWHV 258
            DD A  ++TSGTTG PKGV LTHKNLL   R++   + + P    D+ L+++P +H+
Sbjct: 1   PDDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTP---SDRCLNVMPLFHI 55

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score = 56.1 bits (136), Expect = 3e-08
 Identities = 25/55 (45%), Positives = 32/55 (58%)

Query: 204 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 258
            DD+A  +YTSGTTG PKGVM TH  LL ++RS  + +     D  L   P  H+
Sbjct: 92  PDDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTPDDVVLMPSPLAHI 146

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 56.5 bits (136), Expect = 3e-08
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 7/74 (9%)

Query: 192 DARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI----VPAENGD 247
            A    ++  +  DD+A   YT GTTG PKG MLTH NL   + S+YD+      A  GD
Sbjct: 179 GAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAV-SIYDVWGKPSRATRGD 237

Query: 248 --KFLSMLPPWHVY 259
             + + +LP +H+Y
Sbjct: 238 VERVICVLPLFHIY 251

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 56.3 bits (136), Expect = 3e-08
 Identities = 60/237 (25%), Positives = 100/237 (42%), Gaps = 57/237 (24%)

Query: 400 GGSL--PMHIDLFYEAIGVKVQVGYGLTESSPV--------------IAARRPTCNVLGS 443
           GGS   P  I  F +  GV+V   +G+TE SP+              +  +R    +L  
Sbjct: 301 GGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQR---KLLEK 357

Query: 444 VGHPINHTEIKIVDAETNEVLPAGSK--GIVKVRGSQVMQGYFKNPSATKQALDEDGWLN 501
            G  I   ++KIV  +  E LP   K  G ++VRG  V+  YF+  ++    L  DGW  
Sbjct: 358 QGRVIYGVDMKIVGDDGRE-LPWDGKAFGDLQVRGPWVIDRYFRGDAS---PLV-DGWFP 412

Query: 502 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIV 561
           TGD+  I             G + +  R+KD I  S GE +  +++E  A+    + +  
Sbjct: 413 TGDVATIDAD----------GFMQITDRSKDVIK-SGGEWISSIDIENVAVAHPAVAEAA 461

Query: 562 VIGQDQRRPGAIIVP----DKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKW 614
            I                 D+  +L+  KR        +E+++E+ ++   G++ KW
Sbjct: 462 CIA----------CAHPKWDERPLLVVVKR------PGAEVTREELLAFYEGKVAKW 502

Length = 539

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 55.9 bits (135), Expect = 4e-08
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 190 SNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLYDIVPAENG 246
           +  A +        +DD+A   YT GTTG  KG MLTH+NL   + Q R+L      E  
Sbjct: 192 AKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGC 251

Query: 247 DKFLSMLPPWHVY 259
           +  ++ LP +H+Y
Sbjct: 252 EILIAPLPLYHIY 264

Length = 562

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 56.1 bits (136), Expect = 4e-08
 Identities = 42/164 (25%), Positives = 61/164 (37%), Gaps = 23/164 (14%)

Query: 153 LWGKKSSVAPDIVE--EIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATY 210
           L G K    P I       +  +D  +      R  FS             IG DD+A Y
Sbjct: 170 LPGPKRLAVPLIRRKAHARILDFDAELARQPGDR-LFSGRP----------IGPDDVAAY 218

Query: 211 VYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYER-ACGYFIFS 269
            +T GTTG PK    TH N +        ++    GD     LP +HV      G    +
Sbjct: 219 FHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCGLPLFHVNALLVTGLAPLA 278

Query: 270 RGIELMY---------TAVRNLKDDLQRYQPHYMISVPLVYETL 304
           RG  ++            + N    ++RY+ +++  VP VY  L
Sbjct: 279 RGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAAL 322

Length = 632

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 55.7 bits (135), Expect = 5e-08
 Identities = 43/168 (25%), Positives = 69/168 (41%), Gaps = 26/168 (15%)

Query: 63  FAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSE 122
            A  L   G+ P + + +++ N   ++ A  G     A+ V    R   +EL ++ + S+
Sbjct: 41  LAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSD 100

Query: 123 SVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVF--SYDEIIDLG 180
           +VAL V   EF  R+AE L     +R ++        V      ++      Y++ +  G
Sbjct: 101 AVAL-VYEREFAPRVAEVLPRLPKLRTLV-------VVEDGSGNDLLPGAVDYEDALAAG 152

Query: 181 RESRKAFSDSNDARKHYKYETIGSDDIATYV-YTSGTTGNPKGVMLTH 227
              R     S              DD+  Y+ YT GTTG PKGVM   
Sbjct: 153 SPERDFGERS-------------PDDL--YLLYTGGTTGMPKGVMWRQ 185

Length = 533

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 54.9 bits (133), Expect = 6e-08
 Identities = 24/53 (45%), Positives = 31/53 (58%)

Query: 206 DIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 258
           D A  +YTSGTTG PKGV+LTH  LL   R    ++     D  L+ LP +H+
Sbjct: 82  DTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDVLLTPLPLFHI 134

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 54.8 bits (132), Expect = 7e-08
 Identities = 20/54 (37%), Positives = 28/54 (51%)

Query: 205 DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 258
           D IAT ++TSGTTG PK V  T +N         + +     D +L  LP +H+
Sbjct: 111 DQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHI 164

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 55.5 bits (134), Expect = 7e-08
 Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 6/66 (9%)

Query: 204 SDDIATYVYTSGTTGNPKGVMLTHKNLL---HQIRSLYDIVPAENGDKFLSMLPPWHVYE 260
            +D A  ++TSG+ G+PKGV+ +HK+LL    QI+++ D  P    D+F+S LP +H + 
Sbjct: 364 PEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPN---DRFMSALPLFHSFG 420

Query: 261 RACGYF 266
              G F
Sbjct: 421 LTVGLF 426

Length = 718

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 54.8 bits (132), Expect = 9e-08
 Identities = 54/214 (25%), Positives = 92/214 (42%), Gaps = 34/214 (15%)

Query: 54  SKLEQEILDFAEGL-RVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSE 112
           S+L+  +   A GL  V+GV+  + + L   NS  + V    +L+ G I V   + SSS 
Sbjct: 70  SELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGI-VTTMNPSSSL 128

Query: 113 ELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFS 172
             +       SV LA  +PE        +   + +   ++         P+       + 
Sbjct: 129 GEIKKRVVDCSVGLAFTSPE-------NVEKLSPLGVPVIG-------VPE------NYD 168

Query: 173 YDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLH 232
           +D       +  +   +  D         I  DD+A  +Y+SGTTG  KGV+LTH+NL+ 
Sbjct: 169 FDSKRIEFPKFYELIKEDFDFVPK---PVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIA 225

Query: 233 QIR-------SLYDIVPAENGDKFLSMLPPWHVY 259
            +        S Y+   ++N   +L+ LP +H+Y
Sbjct: 226 MVELFVRFEASQYEYPGSDN--VYLAALPMFHIY 257

Length = 560

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 54.9 bits (133), Expect = 9e-08
 Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 12/77 (15%)

Query: 203 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI---RSLYDIVPAENGDKFLSMLPPWHVY 259
             DD+A  ++TSG+TG PKGV+ TH     QI   R  Y I P   G+  L   P + ++
Sbjct: 172 APDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEP---GEIDLPTFPLFALF 228

Query: 260 ERACG------YFIFSR 270
             A G          +R
Sbjct: 229 GPALGMTSVIPDMDPTR 245

Length = 552

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 54.8 bits (132), Expect = 1e-07
 Identities = 50/208 (24%), Positives = 94/208 (45%), Gaps = 23/208 (11%)

Query: 54  SKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEE 113
           +++    L  ++ L   G+K  ++++  + N+ R L A  G++  GAI      R   E+
Sbjct: 43  AQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTVNPRLFPEQ 102

Query: 114 LLHIYNHSESVALAVENPEFFNRIAETLCSK--AAMRFIILLWGKKSSVAPDIVEEIPVF 171
           +  I NH+E   +  +    F  I E +  K  +  R+++L           +   +   
Sbjct: 103 IAWIINHAEDRVVITDLT--FVPILEKIADKLPSVERYVVLT-DAAHMPQTTLKNAV--- 156

Query: 172 SYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHK-NL 230
           +Y+E I              +A   + ++T   +  A   YTSGTTG+PKGV+ +H+ N+
Sbjct: 157 AYEEWIA-------------EADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNV 203

Query: 231 LHQIRSLY-DIVPAENGDKFLSMLPPWH 257
           LH + +   D +     D  L ++P +H
Sbjct: 204 LHALMANNGDALGTSAADTMLPVVPLFH 231

Length = 542

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 53.3 bits (129), Expect = 2e-07
 Identities = 21/54 (38%), Positives = 29/54 (53%)

Query: 205 DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 258
           D  AT ++TSG+TG PK V+ T  N L   R   + +     D +L  LP +HV
Sbjct: 77  DRPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENLGLTPDDNWLLSLPLFHV 130

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 40/178 (22%), Positives = 63/178 (35%), Gaps = 19/178 (10%)

Query: 64  AEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSES 123
           A GL  +GV+P +++ +++ N   WL+        GAI V       + EL +    S  
Sbjct: 59  ARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGV 118

Query: 124 VALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRES 183
             +           A       AM   +L    +        E +P      ++ L    
Sbjct: 119 RWV-------ICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELR--GVVSLAPAP 169

Query: 184 RKAFSD----------SNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLL 231
              F             +      +  ++  DD     YTSGTTG PKG  L+H N+L
Sbjct: 170 PPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNIL 227

Length = 558

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 53.9 bits (129), Expect = 2e-07
 Identities = 55/190 (28%), Positives = 85/190 (44%), Gaps = 33/190 (17%)

Query: 205 DDIATYVYTSGTTGNPKGVMLTHKNL----LHQIRSLYDIVPAENGDKFLSMLPPWHVYE 260
           +D+A   YT GTTG PKGVMLTHKNL    L  ++ LY+    E  +  L +LP +HVY 
Sbjct: 206 NDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGE--EVVLGVLPFFHVYG 263

Query: 261 RAC--------GY---FIFSRGIELMYTAVRNLKDDLQRYQPHYMISV---PLVYETLYS 306
                      GY    I    +++++ A++  K  L    P   I++   PL+ E   S
Sbjct: 264 MTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDIS 323

Query: 307 GIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARI 366
            I+  I  S+     V      ++       ++ EG+ LT      S  V   ++LW + 
Sbjct: 324 SIRACISGSAPLPVEVQEKFETVTGG-----KLVEGYGLTE-----SSPVTHSNFLWEKR 373

Query: 367 I---CAILWP 373
           +     + WP
Sbjct: 374 VPGSIGVPWP 383

Length = 563

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 53.7 bits (130), Expect = 2e-07
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 6/49 (12%)

Query: 205 DDIATYVYTSGTTGNPKGVMLTHKNLLH---QIRSLYDIVPAENGDKFL 250
           DD+A  ++TSG+TG PKGV ++H NL      +   +D+     GD F 
Sbjct: 97  DDLAYILFTSGSTGKPKGVQISHANLASFLDWMVEDFDLTE---GDVFS 142

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 53.8 bits (130), Expect = 2e-07
 Identities = 39/192 (20%), Positives = 67/192 (34%), Gaps = 25/192 (13%)

Query: 421 GYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVM 480
            YG TE++    A R T     ++G P+ +    ++D +   ++P G+ G + + G  V 
Sbjct: 237 TYGPTEATVTATASRLTPGKPVNIGRPLPNYTCWVLDPDLEPLVPIGAVGELCIGGPGVA 296

Query: 481 QGYFKNPSATKQALDEDGWLN---------TGDIGWIAPHHSRGRSRRCGGVLVLEGRAK 531
           +GY   P  T +    D +           TGD+                G L   GR K
Sbjct: 297 RGYLNRPELTAEKFIPDPFWLNNPGGRIYRTGDLVRYLED----------GSLEFLGR-K 345

Query: 532 DTIVLSTGENVEPLELEEAALRSSLIRQIVVI----GQDQRRPGAIIVPDKEEVLMAAKR 587
           D  V   G+ +E  E+E        +    V+        ++  A +  D       A  
Sbjct: 346 DDQVKIRGQRIELGEIEAVLRALPGVVVAAVVLLLDDPGGKQLVAFLAVDGAAGGEPADV 405

Query: 588 LSI-VHADASEL 598
               + +   E 
Sbjct: 406 DIALLRSALRER 417

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 53.8 bits (129), Expect = 2e-07
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 6/112 (5%)

Query: 199 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPP--- 255
            + +  D +A  +YTSG+TG PKGV + H+ L + +         +  D+ L++      
Sbjct: 360 PQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFD 419

Query: 256 ---WHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETL 304
              + ++              L+      L + L+      ++ VPL+   L
Sbjct: 420 ASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLL 471

Length = 642

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 53.3 bits (128), Expect = 3e-07
 Identities = 39/178 (21%), Positives = 71/178 (39%), Gaps = 24/178 (13%)

Query: 55  KLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEEL 114
           +LE ++      LR +GVK EE++ L   +   + +A  G +  G + V   +  ++++ 
Sbjct: 35  ELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTADDY 94

Query: 115 LHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYD 174
            ++   S +  + V   E    I   L     +   +++             E       
Sbjct: 95  AYMLEDSRARVVFVSG-ELLPVIKAALGKSPHLEHRVVVGRP----------EAGEVQLA 143

Query: 175 EIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLH 232
           E++    E  K       A          +DD A ++Y+SG+TG PKGV+ TH N   
Sbjct: 144 ELLATESEQFKP------AATQ-------ADDPAFWLYSSGSTGMPKGVVHTHSNPYW 188

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 53.0 bits (128), Expect = 3e-07
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 204 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLS 251
            DD+A  +YTSG+TG PKGV ++H+ L++ + S+         D+ L+
Sbjct: 92  PDDLAYVIYTSGSTGKPKGVEVSHRALVNFLLSMARRPGLGASDRLLA 139

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 52.7 bits (127), Expect = 4e-07
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 204 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 258
            DD A  + TSG+TG PK V+LTH+N+L +      +      D  L+ +P  HV
Sbjct: 166 PDDPALLLLTSGSTGVPKCVVLTHRNILARSAGTVQVNGFTPDDVSLNWMPLDHV 220

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 53.0 bits (127), Expect = 4e-07
 Identities = 50/215 (23%), Positives = 96/215 (44%), Gaps = 19/215 (8%)

Query: 67  LRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLH-IYNHSESVA 125
           L  + +K  ++++L   N  ++ +A  G+L  G   V      +  EL H + +   SV 
Sbjct: 68  LGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVL 127

Query: 126 LAVENPEFFNRIAETLCSKAAMRFII------LLWGKKSSVAPDIVEEIPVFSYDEIIDL 179
           + ++N   F    + + +   ++ +I      +L   K+++   +V+ +     +  I+ 
Sbjct: 128 VVIDN---FGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEYRING 184

Query: 180 GRESRKAFSDSNDARKH-YKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY 238
               R+A +     RKH      I  DDIA   YT GTTG  KG MLTH+NL+  ++  +
Sbjct: 185 AIRFREALAL---GRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAH 241

Query: 239 DIVPA-----ENGDKFLSMLPPWHVYERACGYFIF 268
             +       E  +  ++ LP +H++       +F
Sbjct: 242 QWLAGTGKLEEGCEVVITALPLYHIFALTANGLVF 276

Length = 560

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 53.0 bits (127), Expect = 4e-07
 Identities = 49/207 (23%), Positives = 84/207 (40%), Gaps = 22/207 (10%)

Query: 356 VALIDWLWARIICAILW---PLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPM-HIDLFY 411
            AL++ L A+ I  +L     L LL    +   + S     +  +SGG +LP+  +    
Sbjct: 447 AALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLL 506

Query: 412 EAIGVKVQV--GYGLTESSPVIAARRPTCNVLGSV--GHPINHTEIKIVDAETNEVLPAG 467
           +   +  ++   YG TE++    +   +  +   V  G P+ +T++ I+D +    LP G
Sbjct: 507 QLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILD-QGLRPLPLG 565

Query: 468 SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIG-WIAPHHSRGRSRRCGGVLVL 526
             G + + G  +  GY   P  T +         TGD+   +A            G L  
Sbjct: 566 VPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLAD-----------GALEY 614

Query: 527 EGRAKDTIVLSTGENVEPLELEEAALR 553
            GR  D+ V   G  +E  E+E A   
Sbjct: 615 LGRK-DSQVKIRGFRIELGEIEAALAE 640

Length = 642

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 52.7 bits (127), Expect = 4e-07
 Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 13/115 (11%)

Query: 440 VLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG 498
           +  + G P+    E+ + DA+ N + P G  G +  RG    +GY+K+P     A D +G
Sbjct: 351 IFTTQGRPMSPDDEVWVADADGNPL-PQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANG 409

Query: 499 WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR 553
           +  +GD+  I P           G + + GR KD I    GE +   E+E   LR
Sbjct: 410 FYCSGDLVSIDP----------DGYITVVGREKDQIN-RGGEKIAAEEIENLLLR 453

Length = 536

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 52.0 bits (125), Expect = 6e-07
 Identities = 52/234 (22%), Positives = 88/234 (37%), Gaps = 52/234 (22%)

Query: 397 VSGGGSLPMHIDL---FYEAI--GVKVQVGYGLTESSPV--------IAARRP------- 436
           +S G   P+  DL   F   +    ++   YG TE+ PV        +A           
Sbjct: 205 LSAGA--PVPPDLLRRFVANLMPEAEIHTPYGATEALPVASIEGREVLAESAEPPEAGAG 262

Query: 437 TCNVLGSVGHPINHTEIKIVDA--------ETNEVLPAGSKGIVKVRGSQVMQGYFKNPS 488
            C     VGHP+   +++I+          + +  LP G  G + V G  V + Y+  P 
Sbjct: 263 VC-----VGHPVPGIDVRIIPIDDGPIASWDDDIELPPGEVGEIIVSGPHVTREYYNRPE 317

Query: 489 ATKQA---LDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPL 545
           ATK A        W   GD+G+      +GR       L   GR K   V + G  +  +
Sbjct: 318 ATKLAKISDGNRIWHRMGDLGYFDD---QGR-------LWFCGR-KAHRVETAGGTLFTV 366

Query: 546 ELEEAALRSSLIRQIVVIGQDQ---RRPGAIIVPDKEEVLMAAKRLSIVHADAS 596
            +E+   R   +R+  ++G  +   + P  ++ P    +    +    + A A 
Sbjct: 367 PVEQVFNRHPGVRRSALVGVGKPGTQAPVLVVEPMPPVLDRRKRLEGRLRATAK 420

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 52.0 bits (125), Expect = 6e-07
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 6/63 (9%)

Query: 205 DDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLYDIVPAENGDKFLSMLPPWHVYER 261
           DD A  ++TSG+TG PKGV+ TH+     +  +RSLY I     GD+ L+  PP+ ++  
Sbjct: 85  DDPAAILFTSGSTGPPKGVVYTHRTFAAQIDALRSLYGIRE---GDRDLAAFPPFALFGP 141

Query: 262 ACG 264
           A G
Sbjct: 142 ALG 144

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 51.9 bits (125), Expect = 7e-07
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 10/64 (15%)

Query: 200 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAEN-----GDKFLSMLP 254
           E    D++AT +YTSGTTG PKGV+ T+ N             A N      D +L+ +P
Sbjct: 136 EEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVG-----SALNLGLTEDDCWLAAVP 190

Query: 255 PWHV 258
            +H+
Sbjct: 191 IFHI 194

Length = 483

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 51.3 bits (124), Expect = 9e-07
 Identities = 44/177 (24%), Positives = 71/177 (40%), Gaps = 27/177 (15%)

Query: 421 GYGLTESSPVIAARRPTCNVLG----SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 476
            YG TE++  +       + L      +G PI +T + ++D +   V P G  G + + G
Sbjct: 240 AYGPTETTVDVTYHEVDPDDLDGGSVPIGRPIANTRVYVLDEDLRPV-PVGVPGELYIGG 298

Query: 477 SQVMQGYFKNPSATKQALDEDGWLN-------TGDIGWIAPHHSRGRSRRCGGVLVLEGR 529
           + V +GY   P  T +    D +         TGD+    P           G L   GR
Sbjct: 299 AGVARGYLNRPELTAERFVPDPFGGPGERLYRTGDLARWLPD----------GNLEFLGR 348

Query: 530 AKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVL 582
           A D + +  G  +E  E+E A L    +R+ VV+ ++         A +VP     L
Sbjct: 349 ADDQVKIR-GYRIELGEIEAALLAHPGVREAVVVAREDGAGEKRLVAYVVPAAGAEL 404

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 51.2 bits (123), Expect = 1e-06
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 8/105 (7%)

Query: 194 RKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLYDIVPAENGDKFL 250
           R  Y    +  +D+A   YT GTTG  KG MLTH+N+   L Q ++ Y  +     +  +
Sbjct: 195 RMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVV 254

Query: 251 SMLPPWHVYERA--CGYFIFSRGIELMYTAVRNLK---DDLQRYQ 290
           + LP +H++     C  FI   G  L+ T  R++     +L++Y 
Sbjct: 255 TALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYP 299

Length = 560

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 51.1 bits (123), Expect = 1e-06
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 26/124 (20%)

Query: 199 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDK--FLSMLPPW 256
           +  +G D +A Y++TSG+TG PK V+ TH+ L      +    P    +    +  L PW
Sbjct: 158 FAAVGPDTVAKYLFTSGSTGLPKAVINTHRMLCANQAMIAQCWPFLTEEPPVLVDWL-PW 216

Query: 257 -HVYERACGYFIFSRGIE---------------LMYTAVRNLKDDLQRYQPHYMISVPLV 300
            H +    G   F+  +                L    +RNL++      P    +VP  
Sbjct: 217 NHTFG---GNHNFNMVLYNGGTLYIDDGKPVPGLFEETLRNLRE----VSPTVYFNVPKG 269

Query: 301 YETL 304
           +E L
Sbjct: 270 FEML 273

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 51.9 bits (125), Expect = 1e-06
 Identities = 21/53 (39%), Positives = 31/53 (58%)

Query: 205 DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 257
           DD A  ++TSG+ G PKGV+L+H+NLL     +   +     DK  + LP +H
Sbjct: 793 DDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFH 845

Length = 1140

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 59/212 (27%), Positives = 96/212 (45%), Gaps = 27/212 (12%)

Query: 397 VSGGGSL-PMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 455
           V+GG  L P  ++ +    G+ +  GYG TE+  + A  +      GS+G      +++I
Sbjct: 297 VTGGEPLNPEVLEQWKAQTGLDLYEGYGQTETGLICANFKGMKIKPGSMGKASPPYDVQI 356

Query: 456 VDAETNEVLPAGSKGIVKVRGSQV-----MQGYFKNPSATKQALDEDGWLNTGDIGWIAP 510
           +D   N VLP G++G + +R            Y  NP  T   +  D ++ TGD      
Sbjct: 357 IDDNGN-VLPPGTEGDIGIRVKPTRPFCLFSCYVDNPEKTAATIRGDFYI-TGD------ 408

Query: 511 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR-SSLIRQIVVIGQDQRR 569
              RG      G     GRA D ++ S+G  + P E+E A +   +++   VV   D  R
Sbjct: 409 ---RGIMDE-DGYFWFVGRADD-VINSSGYRIGPFEVESALIEHPAVVESAVVSSPDPIR 463

Query: 570 PGAIIVPDKEEVLMAAKRLSIVHADASELSKE 601
            G ++   K  V++A + LS    D  +L+KE
Sbjct: 464 -GEVV---KAFVVLAPQFLS---HDPEQLTKE 488

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 16/128 (12%)

Query: 193 ARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI-------RSLYDIVPAEN 245
           AR+ +K   +G DD+A   YT GTTG  KG  L H+N++  +       +  ++  P  +
Sbjct: 192 ARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPD 251

Query: 246 GDKFLSMLPPWHVYERACGYFIFSR--GIELMYTAVRNLK---DDLQRYQPHYMISVPLV 300
              F+  LP +H++       +  R  G  ++    R++     +L++YQ H   +V   
Sbjct: 252 QLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAV--- 308

Query: 301 YETLYSGI 308
             TLY+ +
Sbjct: 309 -NTLYNAL 315

Length = 557

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 50.3 bits (121), Expect = 2e-06
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 10/73 (13%)

Query: 159 SVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTG 218
              P  +  IPV + DE+ D+         D            +  DD    ++TSGTTG
Sbjct: 107 EELPLEILGIPVITLDELKDIFATGNPYDFDH----------AVKGDDNYYIIFTSGTTG 156

Query: 219 NPKGVMLTHKNLL 231
            PKGV ++H NL+
Sbjct: 157 KPKGVQISHDNLV 169

Length = 503

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 49/188 (26%), Positives = 74/188 (39%), Gaps = 44/188 (23%)

Query: 415 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPA---GSKG- 470
           G +V+ GYG +E + VI  R P     GS+G       + I + ET          + G 
Sbjct: 288 GCQVEDGYGSSEGA-VIVVREPGTPP-GSIGRGAP--GVAIYNPETLTECAVARFDAHGA 343

Query: 471 ----------IVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRC 520
                     +V   G+   +GY+ NP AT + +   G   +GD+ +          R  
Sbjct: 344 LLNADEAIGELVNTAGAGFFEGYYNNPEATAERM-RHGMYWSGDLAY----------RDA 392

Query: 521 GGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEE 580
            G +   GR  D + +  GEN+    +E   LR   I ++ V            VPD E 
Sbjct: 393 DGWIYFAGRTADWMRVD-GENLSAAPIERILLRHPAINRVAVYA----------VPD-ER 440

Query: 581 V---LMAA 585
           V   +MAA
Sbjct: 441 VGDQVMAA 448

Length = 540

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 49.8 bits (119), Expect = 3e-06
 Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 28/208 (13%)

Query: 72  VKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVALAVENP 131
           + P +++++   N  ++ +A  G L  G I V      ++ E+ H +  S + AL   N 
Sbjct: 72  LVPGDRIAVQMPNVLQYPIAVFGALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLN- 130

Query: 132 EFFNRIAETLCSKAAMRFII------LLWGKKSSVAPDIVEE----IPVFSYDEIIDLGR 181
             F ++ + +     + ++I      LL   K  +   +V++    +P +   + +   +
Sbjct: 131 -MFGKLVQEVLPDTGIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPAYHLPQAVPFKQ 189

Query: 182 ESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLY 238
             R+            K   +G DDIA   YT GTTG  KG MLTH NL   + Q+R+  
Sbjct: 190 ALRQG------RGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACL 243

Query: 239 DIVPAENGDKF-------LSMLPPWHVY 259
             +  +            ++ LP +H+Y
Sbjct: 244 SQLGPDGQPLMKEGQEVMIAPLPLYHIY 271

Length = 562

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 49.6 bits (119), Expect = 3e-06
 Identities = 37/155 (23%), Positives = 59/155 (38%), Gaps = 25/155 (16%)

Query: 421 GYGLTESSPVIAARR-----PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 475
            YG TE++    A               +G P+ +T + ++D +   V P G  G + + 
Sbjct: 267 LYGPTETTVWSTATLVDPDDAPRESPVPIGRPLANTRLYVLDDDLRPV-PVGVVGELYIG 325

Query: 476 GSQVMQGYFKNPSATKQA-LDEDGWLN-------TGDIGWIAPHHSRGRSRRCGGVLVLE 527
           G  V +GY   P  T +  + +            TGD+                G L   
Sbjct: 326 GPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLV----------RYLPDGNLEFL 375

Query: 528 GRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVV 562
           GR  D + +  G  +E  E+E A LR   +R+ VV
Sbjct: 376 GRIDDQVKIR-GYRIELGEIEAALLRHPGVREAVV 409

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 50.1 bits (120), Expect = 3e-06
 Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 18/157 (11%)

Query: 425 TESSPVIAARRPTCNVL-GSVGHPINHTEIKIVDAETNEVLP---AGSKGIVKVRGS--Q 478
           TE+  ++ A  P   V  GS+G P+   E  +++ + + + P    G  G + ++     
Sbjct: 242 TETGAIMIANYPGIPVKPGSMGRPLPGIEAAVIERDGDGLTPVTGPGQVGELALKPGWPS 301

Query: 479 VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLST 538
           + +GY  N      +   DGW  TGD+ +          R   G     GRA D I  + 
Sbjct: 302 MFRGYLGNEERYASSF-VDGWYLTGDLAY----------RDEDGYFWFVGRADDVI-KTA 349

Query: 539 GENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIV 575
           G  V P E+E A +    + +  VIG+     G I+ 
Sbjct: 350 GHLVGPFEVESALMEHPAVAEAGVIGKPDPVAGEIVK 386

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 49.9 bits (120), Expect = 3e-06
 Identities = 14/30 (46%), Positives = 23/30 (76%)

Query: 202 IGSDDIATYVYTSGTTGNPKGVMLTHKNLL 231
           + +DD+A  +YTSG+TG PKGV + H+ ++
Sbjct: 124 VDADDLAYVMYTSGSTGRPKGVAVPHRGVV 153

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 49.5 bits (119), Expect = 4e-06
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 199 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLYDIVPAENGDKFLSMLPP 255
           +  +G D IA +++TSG+TG PK V+ TH+ L      +   +    AE     +  L P
Sbjct: 203 HAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFP-FLAEEPPVLVDWL-P 260

Query: 256 WH 257
           W+
Sbjct: 261 WN 262

Length = 614

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 49.1 bits (118), Expect = 5e-06
 Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 30/160 (18%)

Query: 422 YGLTE------SSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 475
           YG TE       + V AA  P      ++G PI +T++ ++D +  + +P G  G + + 
Sbjct: 237 YGPTETTIWSTCARVTAADGP-----VTIGRPIANTQVYVLDED-LQPVPPGVPGELYIG 290

Query: 476 GSQVMQGYFKNPSATKQAL-----DEDG--WLNTGDIGWIAPHHSRGRSRRCGGVLVLEG 528
           G  V +GY   P  T +       D+ G     TGD           R  R  G L   G
Sbjct: 291 GDGVARGYLGRPELTAERFVPDPFDDPGGRLYRTGD---------LVR-WRPDGRLEYLG 340

Query: 529 RAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR 568
           RA D + +  G  +E  E+E A      +   VV+ +++ 
Sbjct: 341 RADDQVKIR-GFRIELGEIEAALRAHPGVADAVVVVREEG 379

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 49.0 bits (117), Expect = 6e-06
 Identities = 43/150 (28%), Positives = 62/150 (41%), Gaps = 21/150 (14%)

Query: 422 YGLTESSPVIAARRPTCNVLGS-----VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 476
           YG TE++  + + + T  +L       +G       + I+D E  E LP G KG + + G
Sbjct: 291 YGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMD-EEGEPLPEGEKGEIVIVG 349

Query: 477 SQVMQGYFKNPSATKQALDEDGWL---NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDT 533
             V +GY  NP  T +A           TGD G I             G L  +GR    
Sbjct: 350 PSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTIT-----------DGQLFYQGRLDFQ 398

Query: 534 IVLSTGENVEPLELEEAALRSSLIRQIVVI 563
           I L  G  +E  ++E    +SS I   VV+
Sbjct: 399 IKLH-GYRIELEDIEFNLRQSSYIESAVVV 427

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 48.7 bits (117), Expect = 6e-06
 Identities = 18/36 (50%), Positives = 26/36 (72%), Gaps = 2/36 (5%)

Query: 202 IGSDDIATYV-YTSGTTGNPKGVMLTHKNLLHQIRS 236
           +  DD+A YV +TSG+TG PKGVM+TH+  ++ I  
Sbjct: 123 VDPDDLA-YVIFTSGSTGEPKGVMITHRAAVNTILD 157

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 48.6 bits (116), Expect = 7e-06
 Identities = 44/162 (27%), Positives = 67/162 (41%), Gaps = 38/162 (23%)

Query: 422 YGLTES------SPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 475
           YGLTE+       P    RRP      S+G  I + E+ ++  + +E  P     +V  R
Sbjct: 309 YGLTEAFRSTYLPPEEVDRRPD-----SIGKAIPNAEVLVLREDGSECAPGEEGELVH-R 362

Query: 476 GSQVMQGYFKNPSATKQ------------ALDEDG-WLNTGDIGWIAPHHSRGRSRRCGG 522
           G+ V  GY+ +P  T +             L E   W  +GD             R   G
Sbjct: 363 GALVAMGYWNDPEKTAERFRPLPPFPGELHLPELAVW--SGDTVR----------RDEEG 410

Query: 523 VLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 564
            L   GR +D ++ ++G  V P E+EE A  + L+ + V  G
Sbjct: 411 FLYFVGR-RDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFG 451

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 48.5 bits (116), Expect = 7e-06
 Identities = 45/197 (22%), Positives = 67/197 (34%), Gaps = 41/197 (20%)

Query: 404 PMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEV 463
           P  I  F    G  V  G+G TE   V   R P     G++G       + IVD +T   
Sbjct: 279 PGDIARFARRFGCVVVDGFGSTEGG-VAITRTPDTPP-GALGPLPP--GVAIVDPDTGTE 334

Query: 464 LPAGSKG-------------IVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 510
            P                  +V   G    +GY+ +P A  + +   G   +GD+ +   
Sbjct: 335 CPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERM-RGGVYWSGDLAYRDA 393

Query: 511 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRP 570
                      G     GR  D + +  GEN+    +E   LR     ++ V        
Sbjct: 394 D----------GYAYFAGRLGDWMRVD-GENLGTAPIERILLRYPDATEVAVYA------ 436

Query: 571 GAIIVPDKE--EVLMAA 585
               VPD    + +MAA
Sbjct: 437 ----VPDPVVGDQVMAA 449

Length = 529

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 48.6 bits (116), Expect = 8e-06
 Identities = 47/227 (20%), Positives = 78/227 (34%), Gaps = 28/227 (12%)

Query: 49  RVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSR 108
           R    ++L   +   A  L   GV+  ++++++  N   W+V        GA  +   +R
Sbjct: 34  RPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTR 93

Query: 109 SSSEELLHIYNHSESVALAVENP----EFFNRIAETLCSK-AAMRFIILLWGKKSSVAPD 163
             S E+ HI     +  L V       +F   +A         +R I ++    +   P 
Sbjct: 94  YRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVV-DDAADATPA 152

Query: 164 IVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYT-SGTTGNPKG 222
                                + F+  + A      E     D    ++T SGTT  PK 
Sbjct: 153 --------------PAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKL 198

Query: 223 VMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFS 269
           V+     LL   R++      + G   L+ LP        CG F FS
Sbjct: 199 VLHRQATLLRHARAIARAYGYDPGAVLLAALP-------FCGVFGFS 238

Length = 540

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 48.7 bits (117), Expect = 8e-06
 Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 13/108 (12%)

Query: 158 SSVAPDIVEEIPVFSYDEI--------IDLGRESRKAFSDSNDARKHYKYETIGSDDIAT 209
                D+     ++              DL   +  A + +  +R       + + D A 
Sbjct: 149 EEARADLARPPRLWVAGGDTLDDPEGYEDLAAAAAGAPTTNPASR-----SGVTAKDTAF 203

Query: 210 YVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 257
           Y+YTSGTTG PK  +++H   L  +     ++     D     LP +H
Sbjct: 204 YIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYH 251

Length = 600

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 48.1 bits (115), Expect = 9e-06
 Identities = 18/33 (54%), Positives = 21/33 (63%)

Query: 203 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR 235
           G DD+   +YTSGTTG PKGVM T   L+  I 
Sbjct: 195 GPDDVTQLIYTSGTTGEPKGVMHTANTLMANIV 227

Length = 547

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 17/73 (23%)

Query: 201 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI---RSLYDIVPAENGDKFLS------ 251
           T GSDD A  +YTSGTTG PKG +  H+ LL  +      +++ P   GD F +      
Sbjct: 84  TDGSDDPAILIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELAP-RPGDVFWTPADWAW 142

Query: 252 -------MLPPWH 257
                  +LP  +
Sbjct: 143 IGGLLDVLLPALY 155

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 47.7 bits (113), Expect = 2e-05
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 3/96 (3%)

Query: 167 EIPVFSYDEIIDLGRESRKAFSDSND-ARKHYKYETIGSDDIATYVYTSGTTGNPKGVML 225
            +PV    E    G  + K   ++ D A      E I   D+    ++SGTTG  KGVML
Sbjct: 145 GLPVIVLGEEKIEGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVML 204

Query: 226 THKNLLHQI-RSLYDIVPAENGD-KFLSMLPPWHVY 259
           TH+NL+  +  SL+ + P   G    L ++P +H+Y
Sbjct: 205 THRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIY 240

Length = 546

>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 45/192 (23%), Positives = 72/192 (37%), Gaps = 18/192 (9%)

Query: 67  LRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVAL 126
           L   G+KP + ++L   N   +L    G+   G       +   S  LLH +    +  L
Sbjct: 21  LAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLNTNIRSGSLLHCFRCCGARVL 80

Query: 127 AVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKA 186
             + PE    + E L +  AM   + ++    +  P+            +I L      A
Sbjct: 81  VAD-PELLEAVEEILPALRAM--GVRVFYLSHTSPPE-----------GVISLL-AKVDA 125

Query: 187 FSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENG 246
            SD           +I     A Y+YTSGTTG PK   ++H  +L Q   +  +      
Sbjct: 126 ASDEPVPASLRSGVSI--RSTALYIYTSGTTGLPKAARISHLRVL-QCSGMLSLCGVTAD 182

Query: 247 DKFLSMLPPWHV 258
           D   + LP +H 
Sbjct: 183 DVVYTTLPLYHS 194

Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 45/179 (25%), Positives = 67/179 (37%), Gaps = 40/179 (22%)

Query: 399 GGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSV--GHPINHTEIKIV 456
           GGG  P  +     A G+ V   YG++E          T    G V  G P++   +++ 
Sbjct: 159 GGGPAPAPVLDAAAAAGINVVRTYGMSE----------TSG--GCVYDGVPLDGVRVRVE 206

Query: 457 DAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR 516
           D            G + + G  + +GY +NP        E GW  T D+G +        
Sbjct: 207 D------------GRIALGGPTLAKGY-RNP-VDPDPFAEPGWFRTDDLGAL---DD--- 246

Query: 517 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIV 575
                GVL + GRA D  + + G  V P  +E A      +    V G    R G  +V
Sbjct: 247 -----GVLTVLGRA-DDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVV 299

Length = 358

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 22/53 (41%), Positives = 31/53 (58%)

Query: 205 DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 257
           D IA   YTSG+T  P GV +TH NL   +  + D +  + GD+ +S LP +H
Sbjct: 180 DTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFH 232

Length = 631

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score = 46.8 bits (111), Expect = 3e-05
 Identities = 45/207 (21%), Positives = 75/207 (36%), Gaps = 39/207 (18%)

Query: 55  KLEQEILDFAEGLRV-IGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEE 113
           +L + +   A  L   + VK  E++++ S NS  ++V    +     I V    R +  E
Sbjct: 32  QLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRLTENE 91

Query: 114 LLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSY 173
           L+     S +  L VE   F N                    K S V   I         
Sbjct: 92  LIFQLKDSGTTVLFVE-KTFQNMALSM--------------QKVSYVQRVI--------- 127

Query: 174 DEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLL-H 232
             I  L     +   +  +                   YTSGTTG PKG +LT +N+  +
Sbjct: 128 -SITSLKEIEDRKIDNFVEK---------NESASFIICYTSGTTGKPKGAVLTQENMFWN 177

Query: 233 QIRSLYDI-VPAENGDKFLSMLPPWHV 258
            + + + I +     D+ + +LP +H+
Sbjct: 178 ALNNTFAIDLTMH--DRSIVLLPLFHI 202

Length = 496

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 31/194 (15%)

Query: 409 LFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGS 468
           L+ +  G+++  GYG+TE +PV++   P     G+VG  +   + +++      V     
Sbjct: 498 LWQDKFGLRILEGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLL-----SVPGIEQ 552

Query: 469 KGIVKVRGSQVMQGYFK--------NPSA-TKQALDEDGWLNTGDIGWIAPHHSRGRSRR 519
            G ++++G  +M GY +         P+A   +   E GW +TGDI              
Sbjct: 553 GGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQ-------- 604

Query: 520 CGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ-IVVIGQDQRRPGAIIV--P 576
             G + ++GRAK    ++ GE V    +E+ AL  S  +Q    I  D  +  A+++   
Sbjct: 605 --GFVQIQGRAKRFAKIA-GEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTT 661

Query: 577 DKE---EVLMAAKR 587
           D E   E L    R
Sbjct: 662 DSELTREKLQQYAR 675

Length = 718

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 46.8 bits (112), Expect = 3e-05
 Identities = 51/192 (26%), Positives = 74/192 (38%), Gaps = 33/192 (17%)

Query: 404 PMHIDLFYEAI-GVKVQVGYGLTES-----SPVIAARRPTCNVLGSV--GHPINHTEIKI 455
           P H+     A  G+++  GYG TE+       VI           S+  G PI +T + I
Sbjct: 254 PAHVRRVLAACPGLRLINGYGPTENTTFSTCHVITRLDE---AADSIPIGRPIPNTTVYI 310

Query: 456 VDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLN------TGDIGWIA 509
           +D E   V P G  G + V G  +  GY   P  T +    D +        TGD     
Sbjct: 311 LDEEGQPV-PIGVPGELYVGGDGLALGYLNRPELTAERFVPDPFGPGERLYRTGD----- 364

Query: 510 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVI----GQ 565
                 R  R  G +   GR  D  V   G  +E  E+E+A L+   +R+  V+      
Sbjct: 365 ----LAR-WRPDGNIEFLGRI-DRQVKIRGFRIELGEIEQALLQHPGVREAAVLVREDAA 418

Query: 566 DQRRPGAIIVPD 577
             +R  A +V  
Sbjct: 419 GDKRLVAYVVAR 430

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 46.5 bits (111), Expect = 3e-05
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 22/94 (23%)

Query: 453 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD-----------EDGWLN 501
           ++IVD +T    PAG+ G + V G  V  GY++ P  T++              E  WL 
Sbjct: 381 VRIVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLR 440

Query: 502 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIV 535
           TGD+G+I+            G L + GR KD ++
Sbjct: 441 TGDLGFIS-----------EGELFIVGRIKDLLI 463

Length = 578

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 46.1 bits (110), Expect = 4e-05
 Identities = 16/30 (53%), Positives = 19/30 (63%)

Query: 204 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQ 233
             DIA   YT GTTG PKGVM TH+++   
Sbjct: 167 PPDIAGLAYTGGTTGKPKGVMGTHRSIATM 196

Length = 524

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 46.1 bits (109), Expect = 4e-05
 Identities = 25/69 (36%), Positives = 30/69 (43%)

Query: 189 DSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDK 248
           D+ DA           DD+   +YTSGTTG PKGVM T   L   I    + +    GD 
Sbjct: 179 DTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDV 238

Query: 249 FLSMLPPWH 257
            L   P  H
Sbjct: 239 ILMASPMAH 247

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 46.3 bits (110), Expect = 4e-05
 Identities = 44/195 (22%), Positives = 64/195 (32%), Gaps = 21/195 (10%)

Query: 64  AEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSES 123
           A  L   GVK  ++++L   N   +L    G    GAI V   +     +L HI  +S +
Sbjct: 60  AHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGA 119

Query: 124 VALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRES 183
             L VE       +         +  + LL    S   P      P+   D         
Sbjct: 120 RLLVVEAA-LLAALEAADPGDLPLPAVWLLDAPASVSVPAGWSTAPLPPLDAPAPAA--- 175

Query: 184 RKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA 243
                             +   D A  +YTSGTTG  KGV   H       R+  + +  
Sbjct: 176 -----------------AVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEI 218

Query: 244 ENGDKFLSMLPPWHV 258
              D   + LP +H 
Sbjct: 219 GADDVLYTTLPLFHT 233

Length = 542

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 45.8 bits (109), Expect = 5e-05
 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 25/139 (17%)

Query: 442 GSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG-WL 500
           G+VG  +   ++ I+D +  E LP G  G +   G +  + Y  +P+ T +A   DG W 
Sbjct: 328 GTVGRAM-FGDLHILDDDGAE-LPPGEPGTIWFEGGRPFE-YLNDPAKTAEARHPDGTWS 384

Query: 501 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQI 560
             GDIG++             G L L  RA   I +S G N+ P E E   +    +   
Sbjct: 385 TVGDIGYVDE----------DGYLYLTDRAAFMI-ISGGVNIYPQEAENLLITHPKVADA 433

Query: 561 VVIGQDQRRPGAIIVPDKE 579
            V G          VP+++
Sbjct: 434 AVFG----------VPNED 442

Length = 511

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 45.8 bits (109), Expect = 6e-05
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 202 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAE-NGDKFLSMLPPWH 257
            G DD+A    TSG+TG+PK V +TH NL     +++     +   D  +S LP +H
Sbjct: 149 TGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFH 205

Length = 545

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 45.5 bits (108), Expect = 6e-05
 Identities = 58/238 (24%), Positives = 98/238 (41%), Gaps = 55/238 (23%)

Query: 41  ISRRN----HRFR-VFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGM 95
           +SRR     HR+    CE + +Q     A+ L  +GV+P +++   + N  R L A  G+
Sbjct: 29  VSRRVEGDIHRYTYRDCERRAKQ----LAQALAALGVEPGDRVGTLAWNGYRHLEAYYGV 84

Query: 96  LATGAINVVRGSRSSSEELLHIYNHSESV-------------ALAVENPEFFNRIAETLC 142
             +GA+      R   E++ +I NH+E               ALA + P     +A  + 
Sbjct: 85  SGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVA--MT 142

Query: 143 SKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETI 202
             A +              P      P+  Y+ ++        A          Y +   
Sbjct: 143 DAAHL--------------P--AGSTPLLCYETLVG-------AQDG------DYDWPRF 173

Query: 203 GSDDIATYVYTSGTTGNPKGVMLTHKN-LLHQIRS-LYDIVPAENGDKFLSMLPPWHV 258
             +  ++  YTSGTTGNPKG + +H++ +LH   + L D +     D  L ++P +HV
Sbjct: 174 DENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHV 231

Length = 539

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 45.7 bits (109), Expect = 6e-05
 Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 27/153 (17%)

Query: 422 YGLTESSPVIAARRPTCNVLGS-----VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 476
           YG TE++  + +   T  +L       +G+    + + I+D E    LP G +G + + G
Sbjct: 293 YGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIID-EEGTKLPDGEQGEIVISG 351

Query: 477 SQVMQGYFKNPSATKQAL-DEDGW--LNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDT 533
             V +GY  NP  T +A    DG    +TGD G++             G+L  +GR    
Sbjct: 352 PSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYLE-----------DGLLFYQGRIDFQ 400

Query: 534 IVLSTGENVEPLELEE--AALR-SSLIRQIVVI 563
           I L    N   +ELEE    LR SS +   VV+
Sbjct: 401 IKL----NGYRIELEEIEQNLRQSSYVESAVVV 429

Length = 503

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 45.7 bits (108), Expect = 8e-05
 Identities = 47/184 (25%), Positives = 71/184 (38%), Gaps = 29/184 (15%)

Query: 422 YGLTESSPVIAARRPTCNVLG----SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 477
           YG TE++  I     TC   G     +G PI +    I+DA    V P G  G + + G 
Sbjct: 803 YGPTEAA--IDVTHWTCVEEGGDSVPIGRPIANLACYILDANLEPV-PVGVLGELYLAGR 859

Query: 478 QVMQGYFKNPSATKQALDEDGWLN------TGDIGWIAPHHSRGRSRRCGGVLVLEGRAK 531
            + +GY   P  T +      ++       TGD           R R   GV+   GR  
Sbjct: 860 GLARGYHGRPGLTAERFVPSPFVAGERMYRTGD---------LARYRA-DGVIEYAGRID 909

Query: 532 DTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE-----EVLMAAK 586
             + L  G  +E  E+E   L    +R+  V+  D ++    +V + E     E L A  
Sbjct: 910 HQVKLR-GLRIELGEIEARLLEHPWVREAAVLAVDGKQLVGYVVLESEGGDWREALKAHL 968

Query: 587 RLSI 590
             S+
Sbjct: 969 AASL 972

Length = 5163

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 45.0 bits (107), Expect = 1e-04
 Identities = 44/204 (21%), Positives = 76/204 (37%), Gaps = 51/204 (25%)

Query: 54  SKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEE 113
            +L QE+   AE LR +GVK   +++L  DNS  W++AD   L  G + +      S+++
Sbjct: 6   QQLWQEVDLLAEQLRALGVK---RIALALDNSIDWVIADLACLQAGIVCIPIPHFFSAQQ 62

Query: 114 LLHIYNHSESVAL---AVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPV 170
             H+ N + +  L     +     +    TL         + +  + S+   ++      
Sbjct: 63  TQHLLNDAGADLLISDDPDAASALHTPFATLG------EDLYIALRPSANPVELPA---- 112

Query: 171 FSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNL 230
                                                A   YTSG+TG PKGV L+   L
Sbjct: 113 -----------------------------------GTAKITYTSGSTGQPKGVCLSAAAL 137

Query: 231 LHQIRSLYDIVPAENGDKFLSMLP 254
               +SL + +     ++ L +LP
Sbjct: 138 ETVAQSLAEAIAILEPERHLCLLP 161

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 28/136 (20%)

Query: 202 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAEN-GDKFLSMLPPWHVYE 260
             +DDIA ++YTSGTTG PKGVM  H++          +  AE    + L + P   ++ 
Sbjct: 88  TEADDIAYWLYTSGTTGKPKGVMHRHRDP---------LTFAEAFARELLGLQPGDRIFS 138

Query: 261 RACGYFIFSRGIELMY------TAVRN--------LKDDLQRYQPHYMISVPLVYETLYS 306
            +  +F +  G  L++      +AV          + D L R++P  +  VP     LY 
Sbjct: 139 SSKLFFAYGLGNSLLFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVP----ALYR 194

Query: 307 GIQKQIFTSSAARRVV 322
            + +    S+   R V
Sbjct: 195 ALLESGAGSAPLFRSV 210

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 21/53 (39%), Positives = 30/53 (56%)

Query: 202 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLP 254
           +  DD    +YTSG+TGNPKGV ++H NL+     +    P   G +FL+  P
Sbjct: 138 VKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAP 190

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 45/166 (27%), Positives = 66/166 (39%), Gaps = 41/166 (24%)

Query: 443 SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ---------- 492
           S G         IVD +T   LP G  G + + G  + +GY+  P  T++          
Sbjct: 403 SCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRL 462

Query: 493 --------ALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEP 544
                   A D+  WL TGD+G               G L + GR  D IV+  G N  P
Sbjct: 463 AEGSHADGAADDGTWLRTGDLGVYL-----------DGELYITGRIADLIVID-GRNHYP 510

Query: 545 LELE-EAALRSSLIRQIVVIGQDQRRPGAIIVP--DKEEVLMAAKR 587
            ++E   A  S ++R+  V         A  VP  D E +++ A+R
Sbjct: 511 QDIEATVAEASPMVRRGYV--------TAFTVPAEDNERLVIVAER 548

Length = 612

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 45.2 bits (107), Expect = 1e-04
 Identities = 32/168 (19%), Positives = 55/168 (32%), Gaps = 36/168 (21%)

Query: 64  AEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSES 123
           A  L   GV P+  + +  + S   +V    +L  G   V        + L ++ + S  
Sbjct: 551 AHVLIAAGVGPDVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDS-G 609

Query: 124 VALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRES 183
           V L +       ++                          +   +     DE  DL    
Sbjct: 610 VRLLLTQSHLLAQL-------------------------PVPAGLRSLCLDEPADLLCGY 644

Query: 184 RKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLL 231
                +            +  D++A  +YTSG+TG PKGV ++H  L 
Sbjct: 645 SGHNPEVA----------LDPDNLAYVIYTSGSTGQPKGVAISHGALA 682

Length = 3956

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 44.1 bits (105), Expect = 2e-04
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 206 DIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGY 265
           D+A +  + GTTG PK +  TH + L+  R+  +    + G  +L++LP  H +  +   
Sbjct: 140 DVALFQLSGGTTGLPKLIPRTHNDYLYSARASAEACGLDPGTVYLAVLPAAHNFTLSSPG 199

Query: 266 FI 267
            +
Sbjct: 200 LL 201

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 56  LEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELL 115
           L      FA  LR +GV P +++ L   +S   + A    L  GA+ V      + ++L 
Sbjct: 16  LHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLLTPQDLE 75

Query: 116 HIYNHSESVALAVENPE 132
           HI + S + AL V   +
Sbjct: 76  HILDDSGA-ALLVTEAD 91

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 44.8 bits (106), Expect = 2e-04
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 11/81 (13%)

Query: 164  IVEEIPVFSYDEIIDLGRESRKAFSDSN-DARKHYKYETIGSDDIATYVYTSGTTGNPKG 222
            ++E++P  + D  + L R     +S++N   R          +++A  +YTSG+TG PKG
Sbjct: 3202 LLEQLPAPAGDTALTLDRLDLNGYSENNPSTRVM-------GENLAYVIYTSGSTGKPKG 3254

Query: 223  VMLTH---KNLLHQIRSLYDI 240
            V + H    N L  I   Y++
Sbjct: 3255 VGVRHGALANHLCWIAEAYEL 3275

Length = 3956

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 202 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQ 233
           I +D  A  +YTSGTTG PKG +LTH NL  Q
Sbjct: 171 IPNDSPALIMYTSGTTGRPKGAVLTHANLTGQ 202

Length = 542

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 43.8 bits (104), Expect = 3e-04
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 11/93 (11%)

Query: 213 TSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGI 272
           TSGTTG PKG      + L  +  L   VP   G+  L   P +H    A G+   +  +
Sbjct: 215 TSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFH----ATGWAHLTLAM 270

Query: 273 ELMYTAV-------RNLKDDLQRYQPHYMISVP 298
            L  T V           +D+ +++   ++ VP
Sbjct: 271 ALGSTVVLRRRFDPEATLEDIAKHKATALVVVP 303

Length = 549

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 15/29 (51%), Positives = 21/29 (72%)

Query: 203 GSDDIATYVYTSGTTGNPKGVMLTHKNLL 231
            +DD+A   +TSGTTG PKG M  H+++L
Sbjct: 145 AADDVALIGFTSGTTGLPKGTMHFHRDIL 173

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 43.4 bits (103), Expect = 3e-04
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 8/62 (12%)

Query: 203 GSDDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLY----DIVPAENGDKFLSMLPP 255
                A   YTSG+T  P GVM++H+N+     Q+ S Y      VP  +    +S LP 
Sbjct: 158 DLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDT-TVVSWLPF 216

Query: 256 WH 257
           +H
Sbjct: 217 YH 218

Length = 578

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 43.8 bits (103), Expect = 3e-04
 Identities = 51/195 (26%), Positives = 80/195 (41%), Gaps = 21/195 (10%)

Query: 394  KAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGS--VGHPINHT 451
            K  V GG +LP  +     A G+ +   YG TE++  +   +       +  +G PI + 
Sbjct: 3314 KRIVCGGEALPADLQQQVFA-GLPLYNLYGPTEATITVTHWQCVEEGKDAVPIGRPIANR 3372

Query: 452  EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGW------LNTGDI 505
               I+D     V P G+ G + + G  + +GY   P  T +    D +        TGD+
Sbjct: 3373 ACYILDGSLEPV-PVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDL 3431

Query: 506  GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ 565
                         R  GV+   GR  D  V   G  +E  E+E   L    +R+ VV+  
Sbjct: 3432 A----------RYRADGVIEYIGRV-DHQVKIRGFRIELGEIEARLLEHPWVREAVVLAV 3480

Query: 566  DQRRPGAIIVPDKEE 580
            D R+  A +VP+ E 
Sbjct: 3481 DGRQLVAYVVPEDEA 3495

Length = 5163

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 43.3 bits (102), Expect = 4e-04
 Identities = 24/77 (31%), Positives = 39/77 (50%)

Query: 182 ESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIV 241
           E   AF  S DA +     +I  + ++  ++TSGT+G PKGVML+ +NL     +   + 
Sbjct: 112 EDLAAFIASADALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLG 171

Query: 242 PAENGDKFLSMLPPWHV 258
             +    FL   P +H+
Sbjct: 172 RVDAHSSFLCDAPMFHI 188

Length = 488

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 17/26 (65%), Positives = 18/26 (69%)

Query: 205 DDIATYVYTSGTTGNPKGVMLTHKNL 230
           DD+A  V TSGTTG PKG MLT   L
Sbjct: 35  DDVALVVATSGTTGTPKGAMLTAAAL 60

Length = 358

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 204 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR 235
            DD+A  +YTSG+TG PKGV + H+N    ++
Sbjct: 104 PDDLAYVIYTSGSTGRPKGVAIEHRNAAALLQ 135

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 42/171 (24%), Positives = 64/171 (37%), Gaps = 28/171 (16%)

Query: 422 YGLTES---SPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQ 478
           YG +E    S              S+G P+  T+  ++DA    V P G  G + + G+ 
Sbjct: 246 YGPSEDTTYSTYAEVEPGASRTP-SIGRPLAGTQAYVLDAHLQPV-PVGVPGELYIGGAG 303

Query: 479 VMQGYFKNPSATKQALDEDGWLN--------TGDIGWIAPHHSRGRSRRCGGVLVLEGRA 530
           V +GY   P  T +    + +          TGD+            RR  G L   GR 
Sbjct: 304 VARGYLGRPELTAERFLPNPFAGSPGERLYRTGDLV----------RRRADGQLEYLGRI 353

Query: 531 KDTIVLSTGENVEPLELEEAALRSSLIRQIVVI----GQDQRRPGAIIVPD 577
            D + +  G  +E  E+E A      + + VV+        R+  A IV D
Sbjct: 354 DDQVKVR-GFRIELGEIEAALRSIPGVAEAVVVAIGDAAGDRQLVAYIVAD 403

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 42.8 bits (101), Expect = 6e-04
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 201 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQ---IRSLYDIVPAENGDKFLSMLPPWH 257
            +  DDIA   YTSG+T  PKGV ++H NL+     IR  + I    + D  +S LP +H
Sbjct: 162 ALQPDDIAFLQYTSGSTALPKGVQVSHGNLVANEQLIRHGFGIDLNPD-DVIVSWLPLYH 220

Length = 4334

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 42.0 bits (99), Expect = 8e-04
 Identities = 37/171 (21%), Positives = 63/171 (36%), Gaps = 38/171 (22%)

Query: 64  AEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLAT---GAINVVRGSRSSSEELLHIYNH 120
           A  L   GV+  +++ + S N C  +   + M A    GA+ V    R + +E+ ++   
Sbjct: 46  AAALAARGVRKGDRILVHSRN-CNQMF--ESMFAAFRLGAVWVPTNFRQTPDEVAYLAEA 102

Query: 121 SESVALAVE--NPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEII- 177
           S + A+      PE            A+     ++    +    D         Y+ ++ 
Sbjct: 103 SGARAMICHADFPEH-----AAAVRAASPDLTHVVAIGGARAGLD---------YEALVA 148

Query: 178 -DLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTH 227
             LG     A               +  DD   + +TSGTTG PK  +LTH
Sbjct: 149 RHLGARVANA--------------AVDHDDPCWFFFTSGTTGRPKAAVLTH 185

Length = 528

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 42.5 bits (100), Expect = 8e-04
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 202  IGSDDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLYDIVPAENGDKFLS 251
            +   ++A  +YTSG+TG PKG    H  L   L   +  Y +  A+   +F S
Sbjct: 1715 LAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTS 1767

Length = 3956

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 42.0 bits (98), Expect = 9e-04
 Identities = 43/166 (25%), Positives = 68/166 (40%), Gaps = 26/166 (15%)

Query: 397 VSGGGSLPMHIDLFYEAIGV-KVQVGYGLTESSPVIAA--RRPTCNVLGS-------VGH 446
           +  GGS      +        +V+ GYGLTE+SPV+     +     L            
Sbjct: 275 LVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKT 334

Query: 447 PINH--TEIKIVDAETNEVLPAGSKGI--VKVRGSQVMQGYFKNPSATKQALDEDGWLNT 502
            +      +++ D E   V P   K +  V+++G  +  GY+ N  AT+ AL  DG+  T
Sbjct: 335 GLPIPLVRLRVADEEGRPV-PKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRT 393

Query: 503 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELE 548
           GDI                G + ++ R KD I    GE +  ++LE
Sbjct: 394 GDIAVWDEE----------GYVEIKDRLKDLIKSG-GEWISSVDLE 428

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 21/55 (38%), Positives = 28/55 (50%)

Query: 204 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 258
            DD     +TSGTTG PKGV ++H  L+ Q  +   IV     D +L   P  H+
Sbjct: 171 PDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHI 225

Length = 563

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 38/143 (26%), Positives = 56/143 (39%), Gaps = 26/143 (18%)

Query: 454 KIVDAETNEVLPA-GSKGIVKVRGSQVMQGYFKNPSATKQALDE-DG--WLNTGDIGWIA 509
            ++D + +EV P  G  G +   G  V  GY+K+P  T +   E DG  +   GD   + 
Sbjct: 199 VVLDEDGSEVPPGSGEVGWIARGGR-VPLGYYKDPEKTAKTFREIDGVRYAVPGDFARVE 257

Query: 510 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR 569
                       G + L GR    I  + GE V P E+EEA      +   +V+G    R
Sbjct: 258 A----------DGTITLLGRGSVCIN-TGGEKVFPEEVEEALKAHPDVADALVVGVPDER 306

Query: 570 PGAIIV----------PDKEEVL 582
            G  +V           D  E+ 
Sbjct: 307 WGQRVVAVVQLRAGAGLDLAELR 329

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 18/35 (51%), Positives = 22/35 (62%)

Query: 192 DARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLT 226
            AR  ++Y     D  A  VYTSGTTG PKGV+L+
Sbjct: 115 HARSWHRYPEPDPDAPALIVYTSGTTGPPKGVVLS 149

Length = 471

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 42/200 (21%), Positives = 76/200 (38%), Gaps = 38/200 (19%)

Query: 67  LRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVAL 126
            R +G+K  + +++F +N+ R+L        +G       S  +  E  +I + S + AL
Sbjct: 41  FRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLTPAEAAYIVDDSGARAL 100

Query: 127 AVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKA 186
                           S A           K  VA  ++++ P   +  ++D G    + 
Sbjct: 101 IT--------------SAA-----------KLDVARALLKQCPGVRHRLVLD-GDGELEG 134

Query: 187 FSDSNDARKHYKYETIGSDDIAT-YVYTSGTTGNPKGVM--------LTHKNLLHQIRSL 237
           F    +A        I  + + T  +Y+SGTTG PKG+          T   L   ++ L
Sbjct: 135 FVGYAEAVAGLPATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRL 194

Query: 238 YDIVPAENGDKFLSMLPPWH 257
           +      +   +LS  P +H
Sbjct: 195 WGF---RSDMVYLSPAPLYH 211

Length = 511

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 41.5 bits (97), Expect = 0.002
 Identities = 18/50 (36%), Positives = 33/50 (66%), Gaps = 3/50 (6%)

Query: 205  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL---YDIVPAENGDKFLS 251
            +++A  +YTSG+TG PKGV ++H  L+   ++    Y++ PA+   +F+S
Sbjct: 2146 ENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPADCELQFMS 2195

Length = 5163

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 18/53 (33%), Positives = 28/53 (52%)

Query: 205 DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 257
           DD A  +YTSGTTG PKG  ++ +  L     L   +  +  D+  + +P +H
Sbjct: 87  DDPAALIYTSGTTGLPKGCAISWRRTLVTSNPLSHDLNLQFPDRTYTCMPLYH 139

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 41.1 bits (96), Expect = 0.002
 Identities = 45/167 (26%), Positives = 65/167 (38%), Gaps = 33/167 (19%)

Query: 442 GSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD--EDGW 499
           GSVG  +    + I D + NE LPAG  G V     ++   Y  +P  T  A       W
Sbjct: 323 GSVGRSVLGD-LHICDDDGNE-LPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFW 380

Query: 500 LNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ 559
              GD+G +             G L L  R K  +++S G N+ P E E A      +  
Sbjct: 381 TTVGDLGSVDED----------GYLYLADR-KSFMIISGGVNIYPQETENALTMHPAVHD 429

Query: 560 IVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADA-----SELSKE 601
           + VIG          VPD E   M  +  +++          EL++E
Sbjct: 430 VAVIG----------VPDPE---MGEQVKAVIQLVEGIRGSDELARE 463

Length = 501

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 40.3 bits (95), Expect = 0.003
 Identities = 37/150 (24%), Positives = 59/150 (39%), Gaps = 23/150 (15%)

Query: 445 GHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQA--LDEDG--WL 500
           G P+ + +  ++D +  +  P    G + + G  V  GY+ +P  T +       G    
Sbjct: 303 GKPLPNQKFYVLDEDGRDC-PDWVPGELYIGGVGVALGYWGDPELTAERFITHRTGERLY 361

Query: 501 NTGDIGWIAPHHSRGRSRRCGGVLVLE--GRAKDTIVLSTGENVEPLELEEAALRSSLIR 558
            TGD          GR R  G    +E  GR  D  V   G  VE  E+E A  R   ++
Sbjct: 362 RTGD---------LGRYRPDG---TIEFLGR-ADHQVKIRGYRVELGEIEAALARHPGVQ 408

Query: 559 QIVVIGQDQRRPGAI---IVPDKEEVLMAA 585
           + VV+        A+   +V +    + AA
Sbjct: 409 RAVVVVVGDGGAKALAAFVVAEDGAAVDAA 438

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 40.5 bits (95), Expect = 0.003
 Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 31/119 (26%)

Query: 455 IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ-----------------ALDED 497
           IVD ET   LP G  G + + G+ +  GY+  P  T                   A D+ 
Sbjct: 404 IVDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDA 463

Query: 498 GWLNTGDIG-WIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSS 555
            W+ TGD G +              G L + GR KD +++  G N  P +LE  A  ++
Sbjct: 464 LWVRTGDYGVYF------------DGELYITGRVKDLVIID-GRNHYPQDLEYTAQEAT 509

Length = 631

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 40.3 bits (95), Expect = 0.003
 Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 13/65 (20%)

Query: 205 DDIATYVYTSGTTGNPKGVMLTHKNLL----HQIRSLYDIVPAENGDKFL------SMLP 254
           DD A  +YTSGTTG PKG + TH          I   +D+ P   GD+ L       M+ 
Sbjct: 100 DDPAMIIYTSGTTGKPKGTVHTHAGFPVKAAKDIGFCFDLKP---GDRLLWITDMGWMMG 156

Query: 255 PWHVY 259
           PW V 
Sbjct: 157 PWLVL 161

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 39.6 bits (93), Expect = 0.004
 Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 201 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL-YDIVPAENGDKFLSMLPPWH 257
               DDIA   Y+SG+T  P+GV++TH+ L+  +R++ +D +    GD+ +S LP +H
Sbjct: 172 RPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYH 229

Length = 579

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 39.9 bits (94), Expect = 0.004
 Identities = 14/26 (53%), Positives = 19/26 (73%)

Query: 206 DIATYVYTSGTTGNPKGVMLTHKNLL 231
           D A Y+YTSGTTG PK  +++H+  L
Sbjct: 82  DPAFYIYTSGTTGLPKAAIMSHRRWL 107

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated

 Score = 40.0 bits (93), Expect = 0.004
 Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 21/153 (13%)

Query: 415 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV 474
           G+ +  G G TE      + R     LG++G  +   EI++V A        G +G + V
Sbjct: 286 GIPILDGIGSTEVGQTFVSNRVDEWRLGTLGRVLPPYEIRVV-APDGTTAGPGVEGDLWV 344

Query: 475 RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRC---GGVLVLEGRAK 531
           RG  + +GY+  P +    +  +GWL+T             R R C    G +    RA 
Sbjct: 345 RGPAIAKGYWNRPDSP---VANEGWLDT-------------RDRVCIDSDGWVTYRCRAD 388

Query: 532 DTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 564
           DT V+  G NV+P E+E   +    + +  V+ 
Sbjct: 389 DTEVIG-GVNVDPREVERLIIEDEAVAEAAVVA 420

Length = 705

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	641
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PLN02654	666	acetate-CoA ligase	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PRK09274	552	peptide synthase; Provisional	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PLN02479	567	acetate-CoA ligase	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	100.0
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	100.0
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.98
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.97
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.95
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.91
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.91
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.89
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.74
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.72
PRK09188	365	serine/threonine protein kinase; Provisional	99.57
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	98.94
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	98.55
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	98.44
PLN02620	612	indole-3-acetic acid-amido synthetase	98.09
PLN02247	606	indole-3-acetic acid-amido synthetase	97.98
PLN02249	597	indole-3-acetic acid-amido synthetase	97.94
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	93.51
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	89.81
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	82.11
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	80.7

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=4.6e-76  Score=625.04  Aligned_cols=564  Identities=31%  Similarity=0.469  Sum_probs=478.5

Q ss_pred             hHHHHHhhhhhhhhhhhhhcc-----cCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHh
Q 006530           23 GFRVFTRNCVDAVATRIRISR-----RNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLA   97 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~-----~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~   97 (641)
                      ..-.+.++.+...++.+++-.     ..+.|+++||.|..+++..++..|+..|+++++.|+|++-|++||++...||..
T Consensus        76 T~~~~f~~~~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~~a~~~  155 (691)
T KOG1256|consen   76 TLYEGFRRSVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISEMACYA  155 (691)
T ss_pred             cHHHHhhcchhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhHHHHHh
Confidence            444555666667776666543     347899999999999999999999999999999999999999999999999999


Q ss_pred             cCCEEEecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcc--cccccEEEEEeCCCCCCC-CCccCCCCcccHH
Q 006530           98 TGAINVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCS--KAAMRFIILLWGKKSSVA-PDIVEEIPVFSYD  174 (641)
Q Consensus        98 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~  174 (641)
                      .|.+.|||...++++.+++|++++++.++|+++++....+.+....  .+.+|.+|++++...... .....++.+++|+
T Consensus       156 ~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~~gv~v~S~~  235 (691)
T KOG1256|consen  156 YSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAENNGVEVYSWD  235 (691)
T ss_pred             cCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEEEecCCchhhhhhhhcCCeEEEEHH
Confidence            9999999999999999999999999999999988888998888874  788999999876543322 2233457799999


Q ss_pred             HHHHhhhhhhcccCCCchhhccccc-CCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHH---Hhhhc---CCCCCC
Q 006530          175 EIIDLGRESRKAFSDSNDARKHYKY-ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRS---LYDIV---PAENGD  247 (641)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~---~~~~~---~~~~~d  247 (641)
                      ++.+.+....            ..+ .++.|+|.|.|.|||||||.||||++||+|+.+.++.   .....   .....|
T Consensus       236 e~~~lG~~~~------------~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~d  303 (691)
T KOG1256|consen  236 EFEELGKKNQ------------RKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDD  303 (691)
T ss_pred             HHHhhccccc------------CCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCc
Confidence            9999997443            122 5788999999999999999999999999999986553   22221   123469


Q ss_pred             EEEEECChhhHHHHHHhHhhhhcCeeEEec--chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHH
Q 006530          248 KFLSMLPPWHVYERACGYFIFSRGIELMYT--AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARA  325 (641)
Q Consensus       248 ~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  325 (641)
                      ++++++|+.|++...+....+..|+.+.+.  ++..+.+++++.+||.+.++|.+|++++..++++..++..++++++.+
T Consensus       304 v~lSyLPLAHi~er~~~~~~~~~G~~IgF~~gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~  383 (691)
T KOG1256|consen  304 VYLSYLPLAHIFERVVELYTFYIGAKIGFARGDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNF  383 (691)
T ss_pred             eEEEeCcHHHHHHHHHHHhHhhcccEEEEecCChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            999999999999999988888999999996  678889999999999999999999999999999999988888888777


Q ss_pred             HHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCc-eeEEeecCCCC
Q 006530          326 LIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGIS-KAGVSGGGSLP  404 (641)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-r~i~~gG~~l~  404 (641)
                      +........    ...+...+                           ...+++.++|+++++.||.. |.+++|++|++
T Consensus       384 A~~~k~~~~----~~~G~~~~---------------------------~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls  432 (691)
T KOG1256|consen  384 AMAYKLEHR----LMKGKSRS---------------------------RDRFADKLVFHKIKQSLGGNVRLIISGAAPLS  432 (691)
T ss_pred             HHHHHHHHH----hhCCCCcc---------------------------cchHHHHHHHHHHHHHhcCceeEEEecCCCCC
Confidence            665554221    22222210                           35689999999999999885 99999999999


Q ss_pred             hhHHHHHHHc-CCeeeeccccccccCeeeecCCCCCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccc
Q 006530          405 MHIDLFYEAI-GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGY  483 (641)
Q Consensus       405 ~~l~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY  483 (641)
                      .++..|++.. |++|+++||+||+++.+....+.+...+++|.|+|+++++++|......-+.|..|||+|+|+++|.||
T Consensus       433 ~ev~~F~r~~~g~~v~eGYGlTEts~g~~~~~~~d~~lgsvG~p~p~~~vKL~dvpe~ny~a~~~~GEIcirG~~Vf~GY  512 (691)
T KOG1256|consen  433 PEVLTFFRAALGCRVLEGYGLTETSAGTTLTLPGDNVLGSVGPPVPGNEVKLVDVPEMNYDADGSKGEICVRGPNVFMGY  512 (691)
T ss_pred             HHHHHHHHHhcCceeeecccccccCCceEeccCCCCCCCCcCCcccCceEEEechHHhCcCcCCCcceEEEecchhceec
Confidence            9999999886 799999999999986666666666688999999999999999875555566777899999999999999


Q ss_pred             cCCchhhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEE
Q 006530          484 FKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVI  563 (641)
Q Consensus       484 ~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~  563 (641)
                      +++|+.|.++|++|||++|||+|++++          +|.|.|+||++++|+++.|++|.|+.||++..+.+.|.+.+|+
T Consensus       513 yK~p~~T~e~ideDGWLhTGDiG~~~p----------~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~  582 (691)
T KOG1256|consen  513 YKDPEKTAEAIDEDGWLHTGDIGEWDP----------NGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVL  582 (691)
T ss_pred             cCChHHHhhhhccccccccccceeECC----------CccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEE
Confidence            999999999999999999999999999          9999999999999999999999999999999999999999999


Q ss_pred             ecC-CCceEEEEecCHHHHHHHHHHcCCCCCChhh-cChHHHHHHHHHHHHhHhc----cCCCccccEEEecCCCCCCCC
Q 006530          564 GQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASE-LSKEKTISLLYGELRKWTS----KCSFQIGPIHVVDEPFTVNFL  637 (641)
Q Consensus       564 g~~-~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~~~----~~~~~~~~i~~~~~~~~~~~~  637 (641)
                      |.+ +..++|+|+|+++.++.|+.+.++- .+..+ ....++++.+...|.++..    ..++++++|.+.+.+|+.+||
T Consensus       583 g~s~~~~LvaiVvpd~e~~~~~a~~~~~~-~~~eelc~n~~~k~~vl~el~~~~~~~~l~~fe~vk~v~l~~~~Fsieng  661 (691)
T KOG1256|consen  583 GDSLRSFLVAIVVPDPEVLKSWAAKDGVK-GTFEELCRNLDVKEAVLSELVKVGKENGLKGFEQVKKVHLLPDPFSIENG  661 (691)
T ss_pred             CCcchhcEEEEEecChhhchhhHHHccCc-hhHHHHhcChhhHHHHHHHHHHHHhhhhccChhhEeeEEEecccccccCC
Confidence            987 5689999999999999999865543 33222 3345566666666655544    455899999999999999999


Q ss_pred             ccc
Q 006530          638 CLA  640 (641)
Q Consensus       638 ~l~  640 (641)
                      .||
T Consensus       662 llt  664 (691)
T KOG1256|consen  662 LLT  664 (691)
T ss_pred             ccc
Confidence            986

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=4.6e-75  Score=627.92  Aligned_cols=560  Identities=33%  Similarity=0.517  Sum_probs=453.1

Q ss_pred             hHHHHHhhhhhhhhhhhhhc-ccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCE
Q 006530           23 GFRVFTRNCVDAVATRIRIS-RRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAI  101 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~  101 (641)
                      .+.....+.++..++..++. ...+.|+.+||+|+.+++.++|++|.+.|+.+||+|+|++.|+++|+++.+||+.+|++
T Consensus        17 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~~~g~v   96 (613)
T COG1022          17 TLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAV   96 (613)
T ss_pred             cHHHHHHHHhhcCCcceeEeeecCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCe
Confidence            44444455555556665654 34788999999999999999999999999977999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhh
Q 006530          102 NVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGR  181 (641)
Q Consensus       102 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (641)
                      .||+++..+.+++.++|++++++++|+++....+.+.......+.+.......+.................+...... .
T Consensus        97 ~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  175 (613)
T COG1022          97 SVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGISLF-L  175 (613)
T ss_pred             EEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhccccccccccchhh-h
Confidence            999999999999999999999999999987777777666554433221111111000000000000001111111100 0


Q ss_pred             hhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcC-CCCCCEEEEECChhhHHH
Q 006530          182 ESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP-AENGDKFLSMLPPWHVYE  260 (641)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~-~~~~d~~l~~~pl~~~~g  260 (641)
                      ...        ..+.....+..++|+|.|+|||||||.||||++||+|+++++..+...++ ..++|+.++++|++|++.
T Consensus       176 ~~~--------~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi~E  247 (613)
T COG1022         176 IDS--------AGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFE  247 (613)
T ss_pred             hcc--------cccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHHHHH
Confidence            000        00001224678999999999999999999999999999999999999997 999999999999999999


Q ss_pred             HHH-hHhhhhcCeeEEe-cchHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHh
Q 006530          261 RAC-GYFIFSRGIELMY-TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKR  338 (641)
Q Consensus       261 ~~~-~~~~l~~G~~~v~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (641)
                      +.. ....+..|.++.. .++..++.++++++||.|.++|.+|+.+.+.+.++..+.+...+.++.++.+......  .+
T Consensus       248 r~~~~~~~~~~g~~~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~--~~  325 (613)
T COG1022         248 RAFEGGLALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKI--SR  325 (613)
T ss_pred             HHHHHHHHhhcceEEEecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH--Hh
Confidence            987 4444566665555 5799999999999999999999999999999999998888877766666655432211  11


Q ss_pred             HhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCC-ceeEEeecCCCChhHHHHHHHcCCe
Q 006530          339 IYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGI-SKAGVSGGGSLPMHIDLFYEAIGVK  417 (641)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~r~i~~gG~~l~~~l~~~~~~~~~~  417 (641)
                                                +..+....+....++.++|+++++.+|+ .|.+++||+++++++..|++.+|++
T Consensus       326 --------------------------~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~lGi~  379 (613)
T COG1022         326 --------------------------ALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSLGIP  379 (613)
T ss_pred             --------------------------hhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHcCCC
Confidence                                      1111112223334889999999999985 5999999999999999999999999


Q ss_pred             eeeccccccccCeeeecCCCCCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccCCC
Q 006530          418 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED  497 (641)
Q Consensus       418 v~~~yG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~  497 (641)
                      +.++||+||+++..+.+++....++++|.|+|+++++|+| +          |||+||||++|.|||++|+.|.++|++|
T Consensus       380 i~eGYGlTEts~~~~v~~~~~~~~gtvG~p~p~~evKI~d-~----------GEilVRG~~Vm~GYyk~pe~Taeaf~~D  448 (613)
T COG1022         380 ILEGYGLTETSAVVSVNPPDRFVLGTVGKPLPGIEVKIAD-D----------GEILVRGPNVMKGYYKNPEATAEAFTED  448 (613)
T ss_pred             eEEEecccccccceEEccccCcccCCcCCcCCCceEEEcc-C----------ceEEEecchhcchhcCChHHHhhhcccc
Confidence            9999999999999999999999999999999999999998 3          9999999999999999999999999999


Q ss_pred             CccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCCceEEEEecC
Q 006530          498 GWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPD  577 (641)
Q Consensus       498 g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~~~~a~vv~~  577 (641)
                      |||+|||+|.+++          +|+|++.||++|+|++++|++|.|+.||+.+.++|.|.+++|+|..+..++|+|+|+
T Consensus       449 GWf~TGDlg~~d~----------~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg~~k~~~~AlIvp~  518 (613)
T COG1022         449 GWFRTGDLGELDE----------DGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVGDDKKFLVALIVPD  518 (613)
T ss_pred             CCcccCceeEEcC----------CCcEEEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEecCCcceEEEEeCC
Confidence            9999999999999          999999999999999999999999999999999999999999998888999999999


Q ss_pred             HHHHHHHHHHcCCCCC-Ch-hhcChHHHHHHHHHHHHhHhccCC--CccccEEEecCCCCCCCCccc
Q 006530          578 KEEVLMAAKRLSIVHA-DA-SELSKEKTISLLYGELRKWTSKCS--FQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       578 ~~~~~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~l~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~  640 (641)
                      .+.+.+|+...+.... +. +-....++++.+..++...+...+  +++++|.+++.+|+.++|++|
T Consensus       519 ~~~l~~~a~~~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~~~~~~~E~i~~~~~~~~~~t~~~~~~t  585 (613)
T COG1022         519 FDALEKWAESLNKVISASREELARDPKLLKLILPRVNKGNKRLFGFEQIKKFVLLPKEFTPENGELT  585 (613)
T ss_pred             HHHHHHHHHhccccccCCHHHHhhCHHHHHHHHHHHHHHhhcccchhhhheeeecccccccccCccc
Confidence            9999999988886553 22 224567777777777766665544  899999999999999999986

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=1.7e-72  Score=638.72  Aligned_cols=563  Identities=26%  Similarity=0.404  Sum_probs=436.2

Q ss_pred             hHHHHHhhhhhhhhhhhhhccc------CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHH
Q 006530           23 GFRVFTRNCVDAVATRIRISRR------NHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGML   96 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~~------~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~   96 (641)
                      .+..+++++++++|+++|+..+      .++++++||+||.++++++|++|.++|+++||+|+|+++|+++|++++|||+
T Consensus        46 t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~  125 (666)
T PLN02614         46 SCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACN  125 (666)
T ss_pred             cHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            4556667777788999998632      2456789999999999999999999999999999999999999999999999


Q ss_pred             hcCCEEEecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhccc-ccccEEEEEeCCCCCCC-CCccCCCCcccHH
Q 006530           97 ATGAINVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSK-AAMRFIILLWGKKSSVA-PDIVEEIPVFSYD  174 (641)
Q Consensus        97 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~  174 (641)
                      ++|+++||+++.++.+++.+++++++++++|+++ +....+....... ..++.++.+.+...... .....+....+++
T Consensus       126 ~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~-~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~  204 (666)
T PLN02614        126 AHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEE-KKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWD  204 (666)
T ss_pred             HcCCEEEEecCCCCHHHHHHHHhccCCCEEEECH-HHHHHHHHhcccccccceEEEEeCCCChHHhhhhhhcCcEEEEHH
Confidence            9999999999999999999999999999999985 4444443322221 23555655532110000 0000012245677


Q ss_pred             HHHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhc-----CCCCCCEE
Q 006530          175 EIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIV-----PAENGDKF  249 (641)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~-----~~~~~d~~  249 (641)
                      ++++.+....            .......++|+++|+|||||||.||||++||+|+++.+......+     ++.++|++
T Consensus       205 ~~~~~~~~~~------------~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~  272 (666)
T PLN02614        205 EFLKLGEGKQ------------YDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVY  272 (666)
T ss_pred             HHHhhcccCC------------CCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEE
Confidence            7765432110            011234679999999999999999999999999998777655443     56789999


Q ss_pred             EEECChhhHHHHHHhHhhhhcCeeEEec--chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q 006530          250 LSMLPPWHVYERACGYFIFSRGIELMYT--AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALI  327 (641)
Q Consensus       250 l~~~pl~~~~g~~~~~~~l~~G~~~v~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  327 (641)
                      ++++|++|++++...+..+..|+++++.  ++..+++.+++++||+++++|+++..++..........+...+.+..+..
T Consensus       273 l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~  352 (666)
T PLN02614        273 LSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAF  352 (666)
T ss_pred             EEeccHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            9999999999987666668899998874  57889999999999999999999999988766554433333333322222


Q ss_pred             HHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhc-CCceeEEeecCCCChh
Q 006530          328 RISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAI-GISKAGVSGGGSLPMH  406 (641)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~r~i~~gG~~l~~~  406 (641)
                      +..+...     ..+..                          ......+.+..++++++..+ +++|.+++||++++..
T Consensus       353 ~~~~~~~-----~~~~~--------------------------~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~  401 (666)
T PLN02614        353 SYKFGNM-----KKGQS--------------------------HVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASH  401 (666)
T ss_pred             HHHHHHH-----HcCCC--------------------------CcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHH
Confidence            1111000     00000                          00112345667788888888 4689999999999998


Q ss_pred             HHHHHHHc-CCeeeeccccccccCeeeecCCCC-CcccccccCcCCcEEEEeeC-C-CCccCCCCCCceEEEecCccccc
Q 006530          407 IDLFYEAI-GVKVQVGYGLTESSPVIAARRPTC-NVLGSVGHPINHTEIKIVDA-E-TNEVLPAGSKGIVKVRGSQVMQG  482 (641)
Q Consensus       407 l~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~-~~~~~~G~~~~~~~v~i~d~-~-~~~~~~~g~~Gel~v~g~~~~~g  482 (641)
                      +.++.+.+ +++++++||+||+++..+...+.. ..++++|.|+||++++|+|. + .+.+++.|+.|||+|+||+++.|
T Consensus       402 ~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~G  481 (666)
T PLN02614        402 VESFLRVVACCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSG  481 (666)
T ss_pred             HHHHHHHhcCCCEEeeCchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCccccc
Confidence            88888887 489999999999876555444332 35689999999999999983 3 24678999999999999999999


Q ss_pred             ccCCchhhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEE
Q 006530          483 YFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVV  562 (641)
Q Consensus       483 Y~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v  562 (641)
                      |+++|+.|.++| .+|||+|||+|++|+          ||+|+|+||+||+|++++|++|+|.+||++|.+||+|.+|+|
T Consensus       482 Y~~~pe~T~~~f-~dGw~~TGDlg~~d~----------dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V  550 (666)
T PLN02614        482 YYKREDLTKEVL-IDGWLHTGDVGEWQP----------NGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWV  550 (666)
T ss_pred             ccCCHHHhhhhh-ccCCcccceEEEEcC----------CCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEE
Confidence            999999999999 489999999999999          999999999999999768999999999999999999999999


Q ss_pred             EecC-CCceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhH--hc--cCCCccccEEEecCCCCCCCC
Q 006530          563 IGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKW--TS--KCSFQIGPIHVVDEPFTVNFL  637 (641)
Q Consensus       563 ~g~~-~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~--~~--~~~~~~~~i~~~~~~~~~~~~  637 (641)
                      +|.+ ++.++|+|+++.+.+..|++++++......-....++++.+.+.+.+.  +.  +..++|++|.+++++|+++||
T Consensus       551 ~g~~~~~~l~alvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng  630 (666)
T PLN02614        551 YGNSFESFLVAIANPNQQILERWAAENGVSGDYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERD  630 (666)
T ss_pred             EecCCcceEEEEEeCCHHHHHHHHHhcCCCcCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCC
Confidence            9998 568999999999999999998876521112234567777787777654  22  333899999999999999999


Q ss_pred             ccc
Q 006530          638 CLA  640 (641)
Q Consensus       638 ~l~  640 (641)
                      .||
T Consensus       631 ~lT  633 (666)
T PLN02614        631 LLT  633 (666)
T ss_pred             cCC
Confidence            987

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2e-71  Score=628.88  Aligned_cols=571  Identities=24%  Similarity=0.340  Sum_probs=441.5

Q ss_pred             hhHHHHHhhhhhhhhhhhhhccc-CC-ceEEEeHHHHHHHHHHHHHHHHHc---CCCCC-----------CEEEEEcCCC
Q 006530           22 HGFRVFTRNCVDAVATRIRISRR-NH-RFRVFCESKLEQEILDFAEGLRVI---GVKPE-----------EKLSLFSDNS   85 (641)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~a~~~~-~~-~~~~~Ty~eL~~~~~~lA~~L~~~---Gl~~G-----------d~Vai~~~n~   85 (641)
                      ..+.+++++.+.+.|+++|+... ++ .|+++||+||.++++++|++|.++   |+++|           |+|+|+++|+
T Consensus        61 ~~l~~~l~~~~~~~p~~~Al~~~~~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N~  140 (746)
T PTZ00342         61 KHIMKLLLEKYKLNNNKIAIVEHSCGEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNS  140 (746)
T ss_pred             chHHHHHHHHHhhcCCceeEeccCCCCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCCC
Confidence            35556667777888999998763 34 378999999999999999999974   99999           9999999999


Q ss_pred             hhHHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCC----
Q 006530           86 CRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVA----  161 (641)
Q Consensus        86 ~e~i~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----  161 (641)
                      ++|+++++||+++|+++||+++.++.+++.++|++++++++|++ .+..+.+.+.....+.++.++.+++......    
T Consensus       141 ~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~-~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~  219 (746)
T PTZ00342        141 INWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLD-LDLVEGLLERKNELPHLKKLIILDTLIKSKEININ  219 (746)
T ss_pred             HHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEc-HHHHHHHHHhhccCCCceEEEEECCCCcccccccc
Confidence            99999999999999999999999999999999999999999996 4677777777777788888887754211000    


Q ss_pred             -----------CCccC-----------------------CC---CcccHHHHHHhhhhhhcc---cCCCch-hhcccccC
Q 006530          162 -----------PDIVE-----------------------EI---PVFSYDEIIDLGRESRKA---FSDSND-ARKHYKYE  200 (641)
Q Consensus       162 -----------~~~~~-----------------------~~---~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~  200 (641)
                                 .....                       ..   ...+|+++..........   +..... ........
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (746)
T PTZ00342        220 KEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKTTNYKIQ  299 (746)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhcccCCCCC
Confidence                       00000                       00   001223332221100000   000000 00001223


Q ss_pred             CCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhc--CCCCCCEEEEECChhhHHHHHHhHhhhhcCeeEEec-
Q 006530          201 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIV--PAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-  277 (641)
Q Consensus       201 ~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~--~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~-  277 (641)
                      ...++|+++|+|||||||.||||++||+|+++.+.......  ...+.+++++++|++|++++...+.++..|+++++. 
T Consensus       300 ~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~  379 (746)
T PTZ00342        300 NEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTINIWS  379 (746)
T ss_pred             CCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHHHHHHHHcCCEEEEeC
Confidence            45689999999999999999999999999998887654332  233568999999999999998878889999999884 


Q ss_pred             -chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhHhcccccccCCCCchhHH
Q 006530          278 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  356 (641)
Q Consensus       278 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (641)
                       ++..+.+.+++++||+++++|.+|+.++..+.......+...+.++.++........      .+.             
T Consensus       380 ~~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~------~~~-------------  440 (746)
T PTZ00342        380 KDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNN------NGG-------------  440 (746)
T ss_pred             CCHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhh------cCC-------------
Confidence             578899999999999999999999999998877766666666655555443332210      000             


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHH--HHHHHHHhhc-CCceeEEeecCCCChhHHHHHH-HcCCeeeeccccccccCeee
Q 006530          357 ALIDWLWARIICAILWPLHLLAEK--LVYKKIQSAI-GISKAGVSGGGSLPMHIDLFYE-AIGVKVQVGYGLTESSPVIA  432 (641)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l-~~~r~i~~gG~~l~~~l~~~~~-~~~~~v~~~yG~tE~~~~~~  432 (641)
                                       ...+.+.  .+|+++++.+ +++|.+++||+++++++.+++. .+|.+++++||+||+++..+
T Consensus       441 -----------------~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~~~~  503 (746)
T PTZ00342        441 -----------------FSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIF  503 (746)
T ss_pred             -----------------cchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCcccceee
Confidence                             0011111  2688888888 5579999999999999966665 57999999999999987766


Q ss_pred             ecCCCCCcccccccCc-CCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccCCCCccccCceeEEcCC
Q 006530          433 ARRPTCNVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  511 (641)
Q Consensus       433 ~~~~~~~~~~~~G~~~-~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~  511 (641)
                      .+......++++|.|+ |+++++|+|.++....+.+..|||+++||+++.||+++|+.|.++|+.||||+|||+|++++ 
T Consensus       504 ~~~~~~~~~gsvG~p~~pg~e~ki~d~~~~~~~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d~-  582 (746)
T PTZ00342        504 VQHADDNNTESIGGPISPNTKYKVRTWETYKATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINK-  582 (746)
T ss_pred             eccCCCCCcccccCcCCCcEEEEEecccccccCCCCCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEECC-
Confidence            6666566788999998 99999999865444445556799999999999999999999999998899999999999999 


Q ss_pred             CCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecC-CCceEEEEecCHHHHHHHHHHcCC
Q 006530          512 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSI  590 (641)
Q Consensus       512 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~-~~~~~a~vv~~~~~~~~~~~~~~~  590 (641)
                               ||+|+|+||++|+|++++|++|+|.+||+++.+||.|.+|+|+|.+ .+.++|+|+++.+.+.+|+++.+.
T Consensus       583 ---------dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~~~~~~Alvv~d~~~~~~~a~~~~~  653 (746)
T PTZ00342        583 ---------NGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSMDGPLAIISVDKYLLFKCLKDDNM  653 (746)
T ss_pred             ---------CCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccCCccccEEEEECCHHHHHHHHHhcCC
Confidence                     9999999999999998789999999999999999999999999976 458999999999999999987542


Q ss_pred             ------CCCChh------hcChHHHHHHHHHHHHhH--hc--cCCCccccEEEecCCCCCCCCccc
Q 006530          591 ------VHADAS------ELSKEKTISLLYGELRKW--TS--KCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       591 ------~~~~~~------~~~~~~l~~~~~~~l~~~--~~--~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                            ...+..      .+...++++.+.+.+.+.  +.  +..++|++|.+++++|++ +|.||
T Consensus       654 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t~-~~~lT  718 (746)
T PTZ00342        654 LESTGINEKNYLEKLTDETINNNIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWDT-NNYLT  718 (746)
T ss_pred             ccccccCcccHHHHhhhhhhccHHHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCCCC-CCccC
Confidence                  211111      224456788888888887  32  334999999999999998 56776

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=2.7e-70  Score=621.16  Aligned_cols=561  Identities=25%  Similarity=0.386  Sum_probs=435.6

Q ss_pred             hHHHHHhhhhhhhhhhhhhcc------cCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHH
Q 006530           23 GFRVFTRNCVDAVATRIRISR------RNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGML   96 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~------~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~   96 (641)
                      .+.+++++.+.++|+++|+..      ..++++++||+||.++++++|++|.++|+++||+|+|+++|+++|+++++||+
T Consensus        44 t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~  123 (660)
T PLN02861         44 SPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACN  123 (660)
T ss_pred             CHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            344556677778888888743      23667889999999999999999999999999999999999999999999999


Q ss_pred             hcCCEEEecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccc-cccEEEEEeCCCCCCC-CCccCCCCcccHH
Q 006530           97 ATGAINVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKA-AMRFIILLWGKKSSVA-PDIVEEIPVFSYD  174 (641)
Q Consensus        97 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~  174 (641)
                      ++|+++||+++.++.+++.+++++++++++|+++ .....+.......+ .++.++...+...... .....+....+|+
T Consensus       124 ~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~-~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~  202 (660)
T PLN02861        124 SQGITYVPLYDTLGANAVEFIINHAEVSIAFVQE-SKISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWE  202 (660)
T ss_pred             HcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECH-HHHHHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEEHH
Confidence            9999999999999999999999999999999985 44455544444332 4666665542211000 0000112235677


Q ss_pred             HHHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcC-----CCCCCEE
Q 006530          175 EIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP-----AENGDKF  249 (641)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~-----~~~~d~~  249 (641)
                      +++..+...             .......++|+++|+|||||||.||||++||+++++.+......++     +.++|++
T Consensus       203 ~~~~~~~~~-------------~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~  269 (660)
T PLN02861        203 EFSLMGSLD-------------CELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSY  269 (660)
T ss_pred             HHHHhCccc-------------CCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEE
Confidence            766543211             0112346899999999999999999999999999988776655443     4678999


Q ss_pred             EEECChhhHHHHHHhHhhhhcCeeEEec--chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q 006530          250 LSMLPPWHVYERACGYFIFSRGIELMYT--AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALI  327 (641)
Q Consensus       250 l~~~pl~~~~g~~~~~~~l~~G~~~v~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  327 (641)
                      ++++|++|++++...+.++..|+++++.  ++..+++.+++++||+++++|+++..++..........+.+.+.++.+..
T Consensus       270 l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~  349 (660)
T PLN02861        270 FSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAY  349 (660)
T ss_pred             EEECcHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            9999999999988767789999998874  67889999999999999999999999998877766666666665555444


Q ss_pred             HHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcC-CceeEEeecCCCChh
Q 006530          328 RISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSGGGSLPMH  406 (641)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~r~i~~gG~~l~~~  406 (641)
                      +.......     .+..                          ........+...+++++..++ ++|.+++||++++++
T Consensus       350 ~~~~~~~~-----~~~~--------------------------~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~  398 (660)
T PLN02861        350 NYKLGNLR-----KGLK--------------------------QEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRH  398 (660)
T ss_pred             HHHHHHHh-----cCCC--------------------------CcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHH
Confidence            43322110     0000                          000112345667888888885 679999999999999


Q ss_pred             HHHHHHHcCC-eeeeccccccccCeeeecCCC-CCcccccccCcCCcEEEEeeC-CCC-ccCCCCCCceEEEecCccccc
Q 006530          407 IDLFYEAIGV-KVQVGYGLTESSPVIAARRPT-CNVLGSVGHPINHTEIKIVDA-ETN-EVLPAGSKGIVKVRGSQVMQG  482 (641)
Q Consensus       407 l~~~~~~~~~-~v~~~yG~tE~~~~~~~~~~~-~~~~~~~G~~~~~~~v~i~d~-~~~-~~~~~g~~Gel~v~g~~~~~g  482 (641)
                      +.++++.++. .++++||+||+++.++..... ....+++|.|+++++++|+|. +.+ ..++.+..|||+++||+++.|
T Consensus       399 ~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~G  478 (660)
T PLN02861        399 VEEFLRVTSCSVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSG  478 (660)
T ss_pred             HHHHHHHHcCCCeeEecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCccccc
Confidence            9888888764 799999999987665544332 234689999999999999983 333 344566789999999999999


Q ss_pred             ccCCchhhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEE
Q 006530          483 YFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVV  562 (641)
Q Consensus       483 Y~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v  562 (641)
                      |+++|+.|.++| .+|||+|||+|++|+          ||+|+|.||+||+|++++|++|+|.+||++|.+||.|.+|+|
T Consensus       479 Y~~~pe~T~~~f-~dGw~~TGDlg~~d~----------dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V  547 (660)
T PLN02861        479 YHKRQDLTEEVL-IDGWFHTGDIGEWQP----------NGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWV  547 (660)
T ss_pred             ccCCHHHHHhhh-hccCcccCceEEECC----------CCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEE
Confidence            999999999999 489999999999999          999999999999999778999999999999999999999999


Q ss_pred             EecCC-CceEEEEecCHHHHHHHHHHcCCCCCChhh-cChHHHHHHHHHHHHhHh----ccCCCccccEEEecCCCCCCC
Q 006530          563 IGQDQ-RRPGAIIVPDKEEVLMAAKRLSIVHADASE-LSKEKTISLLYGELRKWT----SKCSFQIGPIHVVDEPFTVNF  636 (641)
Q Consensus       563 ~g~~~-~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~~----~~~~~~~~~i~~~~~~~~~~~  636 (641)
                      +|.++ +.++|+|+++.+.+.+|+++.+.. .+..+ ....+++..+.+.+.+.+    .+..++|++|.+++++|+.+|
T Consensus       548 ~G~~~~~~~~A~vv~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~n  626 (660)
T PLN02861        548 YGNSFESFLVAVVVPDRQALEDWAANNNKT-GDFKSLCKNLKARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIER  626 (660)
T ss_pred             EecCCcceeEEEEEcCHHHHHHHHHHcCCC-CCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCccc
Confidence            99984 678999999999999999877642 11112 122345555556665543    344489999999999999999


Q ss_pred             Cccc
Q 006530          637 LCLA  640 (641)
Q Consensus       637 ~~l~  640 (641)
                      |.||
T Consensus       627 g~lT  630 (660)
T PLN02861        627 DLIT  630 (660)
T ss_pred             CcCC
Confidence            9987

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=3.4e-70  Score=622.88  Aligned_cols=566  Identities=25%  Similarity=0.378  Sum_probs=445.0

Q ss_pred             hHHHHHhhhhhhhhhhhhhccc--------------------CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEc
Q 006530           23 GFRVFTRNCVDAVATRIRISRR--------------------NHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFS   82 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~~--------------------~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~   82 (641)
                      .+..+.++.+..+|+++|+..+                    .++|+++||+||.++++++|++|.++|+++||+|+|++
T Consensus        59 t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~~  138 (696)
T PLN02387         59 TLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAIFA  138 (696)
T ss_pred             CHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEc
Confidence            4456677777788888887311                    25678899999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCC
Q 006530           83 DNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAP  162 (641)
Q Consensus        83 ~n~~e~i~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  162 (641)
                      +|++||+++++||+++|+++||+++.++.+++.+++++++++++|++. +....+.+.....+.++.++.+++.......
T Consensus       139 ~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~-~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~  217 (696)
T PLN02387        139 DTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDS-KQLKKLIDISSQLETVKRVIYMDDEGVDSDS  217 (696)
T ss_pred             CCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECH-HHHHHHHHHhhccCCceEEEEECCCCchhhh
Confidence            999999999999999999999999999999999999999999999984 6667777766667778888777543211000


Q ss_pred             --CccCCCCcccHHHHHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhh
Q 006530          163 --DIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI  240 (641)
Q Consensus       163 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~  240 (641)
                        .....+...+|+++...+.....            ......++|+++|+|||||||.||||++||+|+++.+......
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~  285 (696)
T PLN02387        218 SLSGSSNWTVSSFSEVEKLGKENPV------------DPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTV  285 (696)
T ss_pred             hhhccCCcEEEEHHHHHHhhccCCC------------CCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhh
Confidence              00112334678877765432211            1223468999999999999999999999999999888876655


Q ss_pred             c-CCCCCCEEEEECChhhHHHHHHhHhhhhcCeeEEecch-----------HHHHHHHhhhCCeEEEeCcHHHHHHHHHH
Q 006530          241 V-PAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAV-----------RNLKDDLQRYQPHYMISVPLVYETLYSGI  308 (641)
Q Consensus       241 ~-~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~~-----------~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  308 (641)
                      + .+.++|++++++|++|++++...+.++..|+++.+..+           ..+..++++++||++.++|.++..+.+..
T Consensus       286 ~~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~  365 (696)
T PLN02387        286 VPKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGV  365 (696)
T ss_pred             cCCCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHH
Confidence            3 57889999999999999998876666777777766432           23456899999999999999999999877


Q ss_pred             HHHHhhccHHHHHHHHHHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Q 006530          309 QKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQS  388 (641)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (641)
                      .......+.+.+.++..........      ..+...    ..                   ......+++..+|++++.
T Consensus       366 ~~~~~~~~~~~~~l~~~a~~~~~~~------~~~~~~----~~-------------------~~~~~~~~~~~~~~~~~~  416 (696)
T PLN02387        366 RKKVDAKGGLAKKLFDIAYKRRLAA------IEGSWF----GA-------------------WGLEKLLWDALVFKKIRA  416 (696)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHH------hccCCc----cc-------------------ccccchhhHHHHHHHHHH
Confidence            6554444444443333322211100      000000    00                   001233567788999988


Q ss_pred             hc-CCceeEEeecCCCChhHHHHHHH-cCCeeeeccccccccCeeeecCCCCCcccccccCcCCcEEEEeeCCCC-ccC-
Q 006530          389 AI-GISKAGVSGGGSLPMHIDLFYEA-IGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETN-EVL-  464 (641)
Q Consensus       389 ~l-~~~r~i~~gG~~l~~~l~~~~~~-~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~-~~~-  464 (641)
                      .+ +++|.+++||+++++++.++++. +|++++++||+||+++..+.+.......+++|.|+|+++++|+|.+++ ... 
T Consensus       417 ~lg~~lr~i~~GGapl~~~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~~~~gsvG~p~p~~evkivd~~~~~~~~~  496 (696)
T PLN02387        417 VLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDTSVGRVGPPLPCCYVKLVSWEEGGYLIS  496 (696)
T ss_pred             HhCCcEEEEEEcCCCCCHHHHHHHHHHcCCCeeEeechhhcccceeecCcccCCCCccCCCCCceEEEEeeccccCcccC
Confidence            88 56799999999999999888875 699999999999998776666555556789999999999999994333 222 


Q ss_pred             -CCCCCceEEEecCcccccccCCchhhhhcc--CCCC--ccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCc
Q 006530          465 -PAGSKGIVKVRGSQVMQGYFKNPSATKQAL--DEDG--WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTG  539 (641)
Q Consensus       465 -~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~--~~~g--~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G  539 (641)
                       .++..|||+|+||+++.||+++|+.|.++|  +.+|  ||+|||+|++++          ||+++|+||+||+|++++|
T Consensus       497 ~~~~p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~----------dG~l~i~gR~kd~ik~~~G  566 (696)
T PLN02387        497 DKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHP----------DGCLEIIDRKKDIVKLQHG  566 (696)
T ss_pred             CCCCCCceEEeccCcccchhcCCHHHHhhhhccccCCCceeecCceEEECC----------CCcEEEEEcccceEECCCC
Confidence             344579999999999999999999999998  3345  999999999999          9999999999999998679


Q ss_pred             eeeccHHhHHHHhcCcccceEEEEecC-CCceEEEEecCHHHHHHHHHHcCCCCCChhh-cChHHHHHHHHHHHHhHhc-
Q 006530          540 ENVEPLELEEAALRSSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASE-LSKEKTISLLYGELRKWTS-  616 (641)
Q Consensus       540 ~~v~p~~iE~~l~~~p~V~~~~v~g~~-~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~~~-  616 (641)
                      ++|+|.+||++|.+||.|.+|+|+|.+ ++.++|+|+++++.+..|+++.++...+..+ ....++.+.+.+.+.+... 
T Consensus       567 e~I~p~eIE~~l~~~p~V~~~~V~g~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  646 (696)
T PLN02387        567 EYVSLGKVEAALSVSPYVDNIMVHADPFHSYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKA  646 (696)
T ss_pred             eEEchHHHHHHHhcCCCeeEEEEEecCCcceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988 6778999999999999999988876544333 3567788888888887733 


Q ss_pred             ---cCCCccccEEEecCCCCCCCCccc
Q 006530          617 ---KCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       617 ---~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                         +..++|++|.+++++|+++||.||
T Consensus       647 ~~l~~~e~~~~i~l~~~~~t~~~g~lT  673 (696)
T PLN02387        647 ARLEKFEIPAKIKLLPEPWTPESGLVT  673 (696)
T ss_pred             cCCCCcceeeEEEEECCCCCCCCCcCC
Confidence               223899999999999999999887

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=3.9e-70  Score=620.53  Aligned_cols=561  Identities=25%  Similarity=0.384  Sum_probs=444.9

Q ss_pred             hHHHHHhhhhhhhhhhhhhcc---cC---CceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHH
Q 006530           23 GFRVFTRNCVDAVATRIRISR---RN---HRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGML   96 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~---~~---~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~   96 (641)
                      .+..++++++.++|+++++..   .+   +.++++||+||.++++++|++|.++|+++||+|+|+++|+++|+++++||+
T Consensus        45 tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~  124 (651)
T PLN02736         45 TLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACS  124 (651)
T ss_pred             CHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            455666777788899988732   22   457889999999999999999999999999999999999999999999999


Q ss_pred             hcCCEEEecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCC-CccCCCCcccHHH
Q 006530           97 ATGAINVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAP-DIVEEIPVFSYDE  175 (641)
Q Consensus        97 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~  175 (641)
                      ++|++++|+++.++.+++.+++++++++++|+++ +....+.......+.++.++...+....... ....++...+|++
T Consensus       125 ~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~-~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~  203 (651)
T PLN02736        125 AYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVP-QTLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSK  203 (651)
T ss_pred             HcCCeEEEeecCCCHHHHHHHHhccCCCEEEECH-HHHHHHHHHhhcCCCceEEEEECCCchhhhhhhccCCcEEEEHHH
Confidence            9999999999999999999999999999999985 6666776666666777777665321110000 0001233467787


Q ss_pred             HHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECCh
Q 006530          176 IIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPP  255 (641)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl  255 (641)
                      +++......            .......++|+++|+|||||||.||||++||+++.+.+.+....+++.++|++++++|+
T Consensus       204 ~~~~~~~~~------------~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~l~~lPl  271 (651)
T PLN02736        204 LLAQGRSSP------------QPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPL  271 (651)
T ss_pred             HHHhcccCC------------CCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEEEEeCCH
Confidence            765432211            11233468999999999999999999999999999999888888889999999999999


Q ss_pred             hhHHHHHHhHhhhhcCeeEEec--chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHH
Q 006530          256 WHVYERACGYFIFSRGIELMYT--AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAY  333 (641)
Q Consensus       256 ~~~~g~~~~~~~l~~G~~~v~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (641)
                      +|++++...+.++..|+++++.  ++..+++.+++++||+++++|.++..+.+.........+.+.+.+..+....... 
T Consensus       272 ~h~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  350 (651)
T PLN02736        272 AHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQ-  350 (651)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-
Confidence            9999998888889999999885  4678999999999999999999999999887766655555555444332221110 


Q ss_pred             HHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcC-CceeEEeecCCCChhHHHHHH
Q 006530          334 TAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSGGGSLPMHIDLFYE  412 (641)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~r~i~~gG~~l~~~l~~~~~  412 (641)
                          ....+                             .+.....+...+++++..++ ++|.+++||+++++++.+++.
T Consensus       351 ----~~~~~-----------------------------~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~  397 (651)
T PLN02736        351 ----ALENG-----------------------------KNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLR  397 (651)
T ss_pred             ----HHHcC-----------------------------CCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHH
Confidence                00000                             00011235566777778885 689999999999999855554


Q ss_pred             -HcCCeeeeccccccccCeeeecCCCCCcccccccCcCCcEEEEeeCCCCc---cCCCCCCceEEEecCcccccccCCch
Q 006530          413 -AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNE---VLPAGSKGIVKVRGSQVMQGYFKNPS  488 (641)
Q Consensus       413 -~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~---~~~~g~~Gel~v~g~~~~~gY~~~~~  488 (641)
                       .+|.++++.||+||+++..+........++++|.|+||++++|+|.+++.   ...++..|||+++||+++.||+++|+
T Consensus       398 ~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~  477 (651)
T PLN02736        398 ICFGGRVLEGYGMTETSCVISGMDEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEV  477 (651)
T ss_pred             HHhCCCeEEEechHHhchheeccCCCCCCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHH
Confidence             57999999999999987766655555667899999999999999843322   22334579999999999999999999


Q ss_pred             hhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecC-C
Q 006530          489 ATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD-Q  567 (641)
Q Consensus       489 ~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~-~  567 (641)
                      .|.+.|+.+|||+|||+|++++          ||+++|+||+||+|++++|++|+|.+||++|.+||+|.+|+|+|.+ .
T Consensus       478 ~t~~~~~~dgw~~TGDlg~~d~----------dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~  547 (651)
T PLN02736        478 QTREVIDEDGWLHTGDIGLWLP----------GGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLN  547 (651)
T ss_pred             HHHhhhccCCCeeccceEEEcC----------CCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEecCCC
Confidence            9999998899999999999999          9999999999999997689999999999999999999999999965 4


Q ss_pred             CceEEEEecCHHHHHHHHHHcCCCCCChhh-cChHHHHHHHHHHHHhHhc----cCCCccccEEEecCCCCCCCCccc
Q 006530          568 RRPGAIIVPDKEEVLMAAKRLSIVHADASE-LSKEKTISLLYGELRKWTS----KCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       568 ~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~~~----~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                      +.+.|+|+++++.+.+|++..++...+..+ ...+++++.+.+.|..++.    +...+|++|.+++++|+++||.||
T Consensus       548 ~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT  625 (651)
T PLN02736        548 SSLVAVVVVDPEVLKAWAASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLT  625 (651)
T ss_pred             ceeEEEEEeCHHHHHHHHHHcCCCccCHHHHhcCHHHHHHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCC
Confidence            679999999999999998876654322222 2446777777777776632    222799999999999998888876

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=1.3e-69  Score=614.46  Aligned_cols=564  Identities=26%  Similarity=0.393  Sum_probs=446.4

Q ss_pred             hHHHHHhhhhhhhhhhhhhccc------CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHH
Q 006530           23 GFRVFTRNCVDAVATRIRISRR------NHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGML   96 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~~------~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~   96 (641)
                      .+...+++.+.++|+++++...      .+.++++||+|+.++++++|.+|.+.|+++||+|+|+++|++||+++++||+
T Consensus        43 t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~  122 (660)
T PLN02430         43 TAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACA  122 (660)
T ss_pred             CHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            4555566677778888887532      2467789999999999999999999999999999999999999999999999


Q ss_pred             hcCCEEEecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCC-CccCCCCcccHHH
Q 006530           97 ATGAINVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAP-DIVEEIPVFSYDE  175 (641)
Q Consensus        97 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~  175 (641)
                      ++|+++||+++.++.+++.+++++++++++|+++......+.......+.++.++.+.+....... ....++...+|++
T Consensus       123 ~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~  202 (660)
T PLN02430        123 AHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWID  202 (660)
T ss_pred             HcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHHH
Confidence            999999999999999999999999999999998644444444333344556777666432110000 0001223467888


Q ss_pred             HHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhh-----cCCCCCCEEE
Q 006530          176 IIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI-----VPAENGDKFL  250 (641)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~-----~~~~~~d~~l  250 (641)
                      ++..+.....            ......++|+++|+|||||||.||||++||+++.+.+.+....     .++.++|+++
T Consensus       203 ~~~~~~~~~~------------~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~l  270 (660)
T PLN02430        203 FLHMGKENPS------------ETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYL  270 (660)
T ss_pred             HHHhhccCCC------------CCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEE
Confidence            7765532211            1123468999999999999999999999999999877765432     1467889999


Q ss_pred             EECChhhHHHHHHhHhhhhcCeeEEec--chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q 006530          251 SMLPPWHVYERACGYFIFSRGIELMYT--AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIR  328 (641)
Q Consensus       251 ~~~pl~~~~g~~~~~~~l~~G~~~v~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  328 (641)
                      +++|++|.+++...+.++..|+++++.  ++..+.+.+++.+||++.++|.+++.+.+.........+...+.++.++.+
T Consensus       271 s~lPl~H~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~  350 (660)
T PLN02430        271 SFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYK  350 (660)
T ss_pred             EeCcHHHHHHHHHHHHHHHcCCEEEEeCCChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            999999999988777778999998774  577899999999999999999999999998877666656665555544444


Q ss_pred             HhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcC-CceeEEeecCCCChhH
Q 006530          329 ISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSGGGSLPMHI  407 (641)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~r~i~~gG~~l~~~l  407 (641)
                      .......     .+..                          ......+++..+|++++..+| ++|.+++||+++++++
T Consensus       351 ~~~~~~~-----~~~~--------------------------~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~  399 (660)
T PLN02430        351 YKLAWMN-----RGYS--------------------------HKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEI  399 (660)
T ss_pred             HHHHHHh-----cCCC--------------------------CCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHH
Confidence            3322210     0000                          000123456678899999985 5799999999999999


Q ss_pred             HHHHHHcC-CeeeeccccccccCeeeecCCC-CCcccccccCcCCcEEEEeeC-CCC-ccCCCCCCceEEEecCcccccc
Q 006530          408 DLFYEAIG-VKVQVGYGLTESSPVIAARRPT-CNVLGSVGHPINHTEIKIVDA-ETN-EVLPAGSKGIVKVRGSQVMQGY  483 (641)
Q Consensus       408 ~~~~~~~~-~~v~~~yG~tE~~~~~~~~~~~-~~~~~~~G~~~~~~~v~i~d~-~~~-~~~~~g~~Gel~v~g~~~~~gY  483 (641)
                      .++++.++ ..++++||+||+++..+.+.+. ...++++|.|.+++++++++. +.+ .+++.+..|||+|+||+++.||
T Consensus       400 ~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY  479 (660)
T PLN02430        400 EEFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGY  479 (660)
T ss_pred             HHHHHHhcCCCeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccc
Confidence            88888875 6899999999998766655433 245689999999999999873 333 4556667899999999999999


Q ss_pred             cCCchhhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEE
Q 006530          484 FKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVI  563 (641)
Q Consensus       484 ~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~  563 (641)
                      +++|+.|.++| .+|||+|||+|++++          ||+|+|.||++|+|++++|++|+|.+||+++.+||.|.+|+|+
T Consensus       480 ~~~~e~t~~~~-~dGw~~TGDig~~d~----------dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~  548 (660)
T PLN02430        480 YKNPELTEEVM-KDGWFHTGDIGEILP----------NGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVY  548 (660)
T ss_pred             cCChHHhhhhh-hccceeccceEEECC----------CCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEE
Confidence            99999999999 599999999999999          9999999999999998789999999999999999999999999


Q ss_pred             ecC-CCceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhc----cCCCccccEEEecCCCCCCCCc
Q 006530          564 GQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTS----KCSFQIGPIHVVDEPFTVNFLC  638 (641)
Q Consensus       564 g~~-~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~----~~~~~~~~i~~~~~~~~~~~~~  638 (641)
                      |.+ ++.++|+|+++++.+.+|+++.++......-...+++++.+.+.+.+++.    +..++|++|++++++|+++||+
T Consensus       549 G~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~  628 (660)
T PLN02430        549 GDSFKSMLVAVVVPNEENTNKWAKDNGFTGSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDL  628 (660)
T ss_pred             ecCCcceEEEEEEcCHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCc
Confidence            976 56889999999999999998877643211224567788888888888843    2238999999999999999999


Q ss_pred             cc
Q 006530          639 LA  640 (641)
Q Consensus       639 l~  640 (641)
                      ||
T Consensus       629 lT  630 (660)
T PLN02430        629 VT  630 (660)
T ss_pred             CC
Confidence            97

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=5.8e-71  Score=591.88  Aligned_cols=464  Identities=27%  Similarity=0.430  Sum_probs=393.4

Q ss_pred             EEEeHHHHHHHHHHHHHHHHHcC--CCCCCEEEEEcCCChhHHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCceEE
Q 006530           49 RVFCESKLEQEILDFAEGLRVIG--VKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVAL  126 (641)
Q Consensus        49 ~~~Ty~eL~~~~~~lA~~L~~~G--l~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l  126 (641)
                      +.+||+|+.+++.++|.+|.++|  +++||+|++++||++++..+++||+.+|+++.++||.+...++.+.++.++++++
T Consensus        44 ~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kii  123 (537)
T KOG1176|consen   44 RELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLI  123 (537)
T ss_pred             cEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEE
Confidence            66999999999999999999876  8999999999999999999999999999999999999999999999999999999


Q ss_pred             EecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCccc-HHHHHHhhhhhhcccCCCchhhcccccCCCCCC
Q 006530          127 AVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFS-YDEIIDLGRESRKAFSDSNDARKHYKYETIGSD  205 (641)
Q Consensus       127 i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (641)
                      |++. .....+.+......  ..++++..........  ....... +.++...+...             . ....+.+
T Consensus       124 f~d~-~~~~~i~~~~~~~~--~~i~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-------------~-~~~~~~d  184 (537)
T KOG1176|consen  124 FVDE-DFYDKISEATSKLA--LKIIVLTGDEGVISIS--DLVEDLDAFEDLMPEGLPD-------------G-IRPVSED  184 (537)
T ss_pred             EEcC-chHHHHHHHHhhcC--CceEEEecccCccccc--cccccccchhhccccCCCc-------------c-cccCCCC
Confidence            9996 77777777665554  3333333221100000  0011111 22222211100             1 3456779


Q ss_pred             CEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHHHhHhh-hhcCeeEEe---cchHH
Q 006530          206 DIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFI-FSRGIELMY---TAVRN  281 (641)
Q Consensus       206 ~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~-l~~G~~~v~---~~~~~  281 (641)
                      |++.++|||||||.||||.+||++++.+.............|+.++.+|++|.+|+...+.+ +..|+++++   +++..
T Consensus       185 d~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~  264 (537)
T KOG1176|consen  185 DTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAEL  264 (537)
T ss_pred             CeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCCHHH
Confidence            99999999999999999999999999988877777778889999999999999999998886 455555555   47899


Q ss_pred             HHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHH
Q 006530          282 LKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDW  361 (641)
Q Consensus       282 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (641)
                      +++.+++|++|++.++|.++..+.+.....                                                  
T Consensus       265 ~~~~i~kykvt~~~~vP~~~~~l~~~p~~~--------------------------------------------------  294 (537)
T KOG1176|consen  265 FLDLIEKYKVTHLFLVPPVLNMLAKSPIVK--------------------------------------------------  294 (537)
T ss_pred             HHHHHHHhCEEEEEcChHHHHHHhcCCccC--------------------------------------------------
Confidence            999999999999999999999997743111                                                  


Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHcC-CeeeeccccccccCeeeecCCCC-
Q 006530          362 LWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG-VKVQVGYGLTESSPVIAARRPTC-  438 (641)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~~-~~v~~~yG~tE~~~~~~~~~~~~-  438 (641)
                                               ..++++++.+.+||+++++.+ +++.+.++ ..+.++||+||+++..+.+.... 
T Consensus       295 -------------------------~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e  349 (537)
T KOG1176|consen  295 -------------------------KYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPE  349 (537)
T ss_pred             -------------------------cccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCcc
Confidence                                     146777899999999999876 77777787 89999999999998777776655 


Q ss_pred             CcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccCCCCccccCceeEEcCCCCCCCcc
Q 006530          439 NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSR  518 (641)
Q Consensus       439 ~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~  518 (641)
                      .+++++|.++++++.++.+ +++..+++++.||||++|++++.||++||+.|+++|+.+|||+|||+|++|+        
T Consensus       350 ~k~~svG~~~~g~~~~v~~-e~g~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~--------  420 (537)
T KOG1176|consen  350 RKPGSVGRLLPGVRVKVLD-ETGVSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDE--------  420 (537)
T ss_pred             CcccccCccccceEEEeeC-CCCCCCCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcC--------
Confidence            4889999999988888877 8899999999999999999999999999999999998789999999999999        


Q ss_pred             ccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCCc----eEEEEecCHHHHHHHHHHcCCCCCC
Q 006530          519 RCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLSIVHAD  594 (641)
Q Consensus       519 ~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~~----~~a~vv~~~~~~~~~~~~~~~~~~~  594 (641)
                        ||+|+|.+|++|+|+. +|++|+|.|||++|..||.|.||+|+|.+|+.    ++|+||.+++               
T Consensus       421 --DG~l~IvdR~KdlIk~-~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g---------------  482 (537)
T KOG1176|consen  421 --DGYLYIVDRSKDLIKY-GGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKG---------------  482 (537)
T ss_pred             --CCeEEEecchhhheee-CCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCC---------------
Confidence              9999999999999997 99999999999999999999999999999875    5599998764               


Q ss_pred             hhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCcc
Q 006530          595 ASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  639 (641)
Q Consensus       595 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l  639 (641)
                       .+++.++++++++++|+.|+     .+++++++++.|.+.|||+
T Consensus       483 -~~lte~di~~~v~k~l~~y~-----~~~~V~Fvd~lPKs~~GKi  521 (537)
T KOG1176|consen  483 -STLTEKDIIEYVRKKLPAYK-----LPGGVVFVDELPKTPNGKI  521 (537)
T ss_pred             -CcCCHHHHHHHHHhhCChhh-----ccCeEEEeccCCCCCcchH
Confidence             67899999999999999998     8899999999999999997

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=2.2e-70  Score=555.43  Aligned_cols=538  Identities=27%  Similarity=0.430  Sum_probs=469.0

Q ss_pred             CceEEEeHHHHHHHHHHHHHHHHHcCCCCCCE-EEEEcCCChhHHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCce
Q 006530           46 HRFRVFCESKLEQEILDFAEGLRVIGVKPEEK-LSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESV  124 (641)
Q Consensus        46 ~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~-Vai~~~n~~e~i~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~  124 (641)
                      |.|.+.||.|+.+++.++|++|...|++++++ ++|+++.+.+|..+.+||++.+.+.|.+...+..+.+.|-|++++++
T Consensus        85 g~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~  164 (678)
T KOG1180|consen   85 GDYKWMSYNEVYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETEST  164 (678)
T ss_pred             cceeeecHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccce
Confidence            57899999999999999999999999998776 99999999999999999999999999999999999999999999999


Q ss_pred             EEEecChhhHHHHHHhhcccccccEEEEEeCCCCC-----CCCCccCCCCcccHHHHHHhhhhhhcccCCCchhhccccc
Q 006530          125 ALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSS-----VAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKY  199 (641)
Q Consensus       125 ~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (641)
                      .+|++. +...++....+....++++|..+..+..     ...-..+.+.+.+|++++..++....            ++
T Consensus       165 ~i~T~~-~LL~kl~~~l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~------------~~  231 (678)
T KOG1180|consen  165 AIFTDS-ELLPKLKAPLKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEI------------PP  231 (678)
T ss_pred             EEEeCH-HHHHHHHHHHhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCC------------CC
Confidence            999996 7777998888999999999998742211     11112356789999999999987642            23


Q ss_pred             CCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhc-CCCCCCEEEEECChhhHHHHHHhHhhhhcCeeEEecc
Q 006530          200 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIV-PAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA  278 (641)
Q Consensus       200 ~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~  278 (641)
                      .++.++|+|+|+|||||||.||||+++|+|+++.+....... .+.+.|+++.++|+.|++.+..-+.+++.|+.+-+.+
T Consensus       232 ~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S  311 (678)
T KOG1180|consen  232 HPPKPSDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENVPELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSS  311 (678)
T ss_pred             CCCCCCceEEEEEcCCCCCCCceEEEecccHHhhhhhhcccCcccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCC
Confidence            444789999999999999999999999999999999887776 6789999999999999999999999999999999876


Q ss_pred             hHHHHH-----------HHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhHhccccccc
Q 006530          279 VRNLKD-----------DLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTR  347 (641)
Q Consensus       279 ~~~~~~-----------~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (641)
                      +..+.+           ++...|||+|.++|.+|++..+.+-++....+.+.+.++.............           
T Consensus       312 ~~TLtdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~-----------  380 (678)
T KOG1180|consen  312 PLTLTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIER-----------  380 (678)
T ss_pred             cceecccchhhccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhc-----------
Confidence            655544           4568999999999999999999999988888877766654433322222110           


Q ss_pred             CCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCC-ceeEEeecCCCChhHHHHHHHc-CCeeeeccccc
Q 006530          348 NQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGI-SKAGVSGGGSLPMHIDLFYEAI-GVKVQVGYGLT  425 (641)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~r~i~~gG~~l~~~l~~~~~~~-~~~v~~~yG~t  425 (641)
                                             --|...+++.++|+++|..+|+ +|.+++||++++++.++|++.+ .+++.++||.|
T Consensus       381 -----------------------~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF~nic~C~Pv~qGYGLT  437 (678)
T KOG1180|consen  381 -----------------------NGPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQRFMNICFCCPVLQGYGLT  437 (678)
T ss_pred             -----------------------cCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHhcccccccccccc
Confidence                                   1235678999999999999977 5999999999999999999986 77999999999


Q ss_pred             cccCeeeecCCCCCcccccccCcCCcEEEEeeCCCCccCCCCC--CceEEEecCcccccccCCchhhhhccCC-CC--cc
Q 006530          426 ESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGS--KGIVKVRGSQVMQGYFKNPSATKQALDE-DG--WL  500 (641)
Q Consensus       426 E~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~--~Gel~v~g~~~~~gY~~~~~~~~~~~~~-~g--~~  500 (641)
                      |+++..+...+.+...+.+|.|++.++++++|-+.+.-.+.+.  .|||||+|+++..||++|++.|.+.|.. ||  ||
T Consensus       438 Etca~~tv~e~~d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF  517 (678)
T KOG1180|consen  438 ETCAAATVLEPEDFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKPPRGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWF  517 (678)
T ss_pred             chhcccEecChhhcccccccCCccceEEEEEEhhhcCccCCCCCCCceEEecCCccChhhhCChhhhhhhceecCCcEEE
Confidence            9998888888888888899999999999999976555555555  8999999999999999999999999977 88  99


Q ss_pred             ccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCC-CceEEEEecCHH
Q 006530          501 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ-RRPGAIIVPDKE  579 (641)
Q Consensus       501 ~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~-~~~~a~vv~~~~  579 (641)
                      +|||+|.+.+          ||.|.|++|++|++++.+|+.|+...+|+.++..|.|...+|++.+. ..++++|||+++
T Consensus       518 ~TGDIGe~~p----------dG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~NICvyAd~~~s~~VaiVVPn~~  587 (678)
T KOG1180|consen  518 RTGDIGEFHP----------DGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYVDNICVYADSNKSKPVAIVVPNQK  587 (678)
T ss_pred             eccccceecC----------CCcEEEeechhhhhhhcccceeehHHHHHHHhcCcchhheEEecccccceeEEEEcCCch
Confidence            9999999999          99999999999999999999999999999999999999999999865 468899999999


Q ss_pred             HHHHHHHHcCCCCCChhh-cChHHHHHHHHHHHHhHhccCC----CccccEEEecCCCCCCCCccc
Q 006530          580 EVLMAAKRLSIVHADASE-LSKEKTISLLYGELRKWTSKCS----FQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       580 ~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~~~~~~----~~~~~i~~~~~~~~~~~~~l~  640 (641)
                      .+.++|.+.++......+ ....++++.+.+.|.++.....    +.|.+|++.+++||++||.+|
T Consensus       588 ~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak~~~L~~iEip~~I~l~~e~WTPenGlvT  653 (678)
T KOG1180|consen  588 HLTKLAEKAGISGSTWEELCEDKKVVKAVLKELIEAAKSQKLERIEIPAKIVLSPEPWTPENGLVT  653 (678)
T ss_pred             HHHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHHHHHhcccccccccceeEecCCCcCCCccccH
Confidence            999999999998876655 4568889999999888775443    788999999999999999886

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=8.8e-70  Score=542.45  Aligned_cols=502  Identities=23%  Similarity=0.348  Sum_probs=424.3

Q ss_pred             hhhhhhhhHHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHH
Q 006530           16 SLDYHRHGFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGM   95 (641)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~   95 (641)
                      +++.-.+.+.+.++...++.|||.+.+..... .++||+|+.+.++.+|.+|.++|+++||+|+|-.||+.+|+..+|||
T Consensus        44 ~ipl~~~Tigq~l~~~t~~v~dkea~Vf~~eg-~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~  122 (596)
T KOG1177|consen   44 QIPLDSETIGQLLETTTERVPDKEAAVFDHEG-IRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLAC  122 (596)
T ss_pred             CCCcccccHHHHHHHHhhccCcceEEEEeecc-chhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHH
Confidence            35666678889999999999999987755333 23999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEecCCCCCHHHHHHHHHhcCceEEEecCh----hhHHHHHHhhcc-------------cccccEEEEEeCCCC
Q 006530           96 LATGAINVVRGSRSSSEELLHIYNHSESVALAVENP----EFFNRIAETLCS-------------KAAMRFIILLWGKKS  158 (641)
Q Consensus        96 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~----~~~~~~~~~~~~-------------~~~~~~~v~~~~~~~  158 (641)
                      +++|.+.|++||.+..+++++.|++.+++++|....    .+.+.+.+++++             .+.+++++..+++..
T Consensus       123 A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed~~  202 (596)
T KOG1177|consen  123 ARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADEDHP  202 (596)
T ss_pred             HHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCCCc
Confidence            999999999999999999999999999999999742    334455665553             245566666653322


Q ss_pred             CCCCCccCCCCcccHHHHHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHh
Q 006530          159 SVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY  238 (641)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~  238 (641)
                              -.+.+.++|++..+..+.-...       ........|+|++.|.|||||||.|||+.+||.|++++.....
T Consensus       203 --------~~Ga~~~sev~~~~s~~~~a~l-------~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg  267 (596)
T KOG1177|consen  203 --------LPGAFLLSEVLKAASKEERAKL-------ADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVG  267 (596)
T ss_pred             --------CCCceehHHHHHhcchHHHHHH-------HhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHH
Confidence                    2357899999887765332111       0122346789999999999999999999999999999999999


Q ss_pred             hhcCCCCCCEEEEECChhhHHHHHH-hHhhhhcCeeEEec----chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHh
Q 006530          239 DIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIF  313 (641)
Q Consensus       239 ~~~~~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  313 (641)
                      ..+++.+.+++++..|++|.+|... .+.+|..|++++++    ++...+..+.++++|.++++|+++..+++..+.+..
T Consensus       268 ~r~g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~  347 (596)
T KOG1177|consen  268 ARAGYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQV  347 (596)
T ss_pred             HHhCcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccC
Confidence            9999999889999999999999665 66779999999995    578999999999999999999999999876554432


Q ss_pred             hccHHHHHHHHHHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCc
Q 006530          314 TSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGIS  393 (641)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  393 (641)
                                                                                                 +++++
T Consensus       348 ---------------------------------------------------------------------------~~s~l  352 (596)
T KOG1177|consen  348 ---------------------------------------------------------------------------DLSSL  352 (596)
T ss_pred             ---------------------------------------------------------------------------chhhh
Confidence                                                                                       33444


Q ss_pred             eeEEeecCCCChhH-HHHHHHcCC-eeeeccccccccCeeeecCCCC---CcccccccCcCCcEEEEeeCCCCccCCCCC
Q 006530          394 KAGVSGGGSLPMHI-DLFYEAIGV-KVQVGYGLTESSPVIAARRPTC---NVLGSVGHPINHTEIKIVDAETNEVLPAGS  468 (641)
Q Consensus       394 r~i~~gG~~l~~~l-~~~~~~~~~-~v~~~yG~tE~~~~~~~~~~~~---~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~  468 (641)
                      |.++.||+++|+++ +...+..+. .+...||+||++.+.+.....+   ....++|..+++.+..|+| ..+..+|-|.
T Consensus       353 r~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~~~  431 (596)
T KOG1177|consen  353 RKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVPLGT  431 (596)
T ss_pred             hhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccccccccc-CCCCccccCC
Confidence            88899999999998 556665654 4788999999997777655544   4556899999999999999 7788999999


Q ss_pred             CceEEEecCcccccccCCchhhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhH
Q 006530          469 KGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELE  548 (641)
Q Consensus       469 ~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE  548 (641)
                      .|||++||++.|.|||++++.|.++...|.||+|||+|.+++          +|.++++||.+|+|+- +|++|+|.|||
T Consensus       432 ~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~TGDi~~m~e----------nG~i~iVGRskdmI~r-GGENVyP~ElE  500 (596)
T KOG1177|consen  432 KGELLIRGYSTMLGYWGEEEKTKETIGNDRWYDTGDIAVMDE----------NGTIEIVGRSKDMIIR-GGENVYPTELE  500 (596)
T ss_pred             CceEEEEechhheeecCCcccchhhcccccceecCceEEEcC----------CCcEEEEEcccCeEEe-CCcccChHHHH
Confidence            999999999999999999999999999999999999999999          9999999999999985 99999999999


Q ss_pred             HHHhcCcccceEEEEecCCCceE----EEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCcccc
Q 006530          549 EAALRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGP  624 (641)
Q Consensus       549 ~~l~~~p~V~~~~v~g~~~~~~~----a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~  624 (641)
                      +.|.+||.|.++.|+|++|+++|    |+|.+..+..              .....++|+.+|+.+|.-++     .|+.
T Consensus       501 ~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e--------------~~~t~E~lKa~Ck~klaHFK-----iPky  561 (596)
T KOG1177|consen  501 DFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGAE--------------GKTTAETLKAMCKGKLAHFK-----IPKY  561 (596)
T ss_pred             HHHhhCCCeeeEEEEccCCCcccceEEEEEEeecccc--------------ccccHHHHHHHHhccccccc-----CCcE
Confidence            99999999999999999998766    5555554320              12688999999999999999     6778


Q ss_pred             EEEecCCCCCCCCcc
Q 006530          625 IHVVDEPFTVNFLCL  639 (641)
Q Consensus       625 i~~~~~~~~~~~~~l  639 (641)
                      |+++++=|.+-+||+
T Consensus       562 ~vf~~~FPlT~tGKI  576 (596)
T KOG1177|consen  562 FVFVDEFPLTTTGKI  576 (596)
T ss_pred             EEEeccCcccccccc
Confidence            999999888999986

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.7e-67  Score=602.19  Aligned_cols=557  Identities=24%  Similarity=0.358  Sum_probs=433.4

Q ss_pred             hHHHHHhhhhhhhhhhhhhcccC------------------------CceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEE
Q 006530           23 GFRVFTRNCVDAVATRIRISRRN------------------------HRFRVFCESKLEQEILDFAEGLRVIGVKPEEKL   78 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~~~------------------------~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~V   78 (641)
                      .+.+.++++++++|++.|+..+.                        ++++++||+||.++++++|++|.++|+++||+|
T Consensus        70 t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd~V  149 (700)
T PTZ00216         70 NFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGSNV  149 (700)
T ss_pred             CHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCCEE
Confidence            46667777778888888876531                        246899999999999999999999999999999


Q ss_pred             EEEcCCChhHHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcc--cccccEEEEEeCC
Q 006530           79 SLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCS--KAAMRFIILLWGK  156 (641)
Q Consensus        79 ai~~~n~~e~i~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~  156 (641)
                      +|+++|++||+++++||+++|++++|+++.++.+++.+++++++++++|+++ .....+......  .+.. .++.+++.
T Consensus       150 ~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~-~~~~~l~~~~~~~~~~~~-~ii~~~~~  227 (700)
T PTZ00216        150 AIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNG-KNVPNLLRLMKSGGMPNT-TIIYLDSL  227 (700)
T ss_pred             EEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECH-HHHHHHHHhhhhccCCce-EEEEECCC
Confidence            9999999999999999999999999999999999999999999999999985 334444333322  1222 34443321


Q ss_pred             CCCCCCCccCCCCcccHHHHHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHH
Q 006530          157 KSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRS  236 (641)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~  236 (641)
                      ....   ........+|++++..+.......         .......++|+++++|||||||.||||++||+|+++.+.+
T Consensus       228 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~  295 (700)
T PTZ00216        228 PASV---DTEGCRLVAWTDVVAKGHSAGSHH---------PLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILA  295 (700)
T ss_pred             cccc---ccCCceEEEHHHHHHhCCcccccc---------ccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHH
Confidence            1110   011334578888876542111000         1123446899999999999999999999999999988877


Q ss_pred             Hhhhc-----CCCCCCEEEEECChhhHHHHHHhHhhhhcCeeEEecchHHHHH-------HHhhhCCeEEEeCcHHHHHH
Q 006530          237 LYDIV-----PAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKD-------DLQRYQPHYMISVPLVYETL  304 (641)
Q Consensus       237 ~~~~~-----~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~~~~~~~-------~i~~~~~t~~~~~P~~~~~l  304 (641)
                      ....+     ...++|++++++|++|++++......+..|+++++.++..+.+       .+++++||++.++|.++..+
T Consensus       296 ~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l  375 (700)
T PTZ00216        296 LEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFGSPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTI  375 (700)
T ss_pred             HHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEECCHHHhhhhhccccchHHHcCCcEEEechHHHHHH
Confidence            65443     2367899999999999999876656678888887776666655       68899999999999999999


Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 006530          305 YSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYK  384 (641)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (641)
                      .+.........+.+.+.++.+.........     ..+.                              ...+++..+|+
T Consensus       376 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-----~~~~------------------------------~~~~~~~~v~~  420 (700)
T PTZ00216        376 KKAVEAKLPPVGSLKRRVFDHAYQSRLRAL-----KEGK------------------------------DTPYWNEKVFS  420 (700)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHHHH-----HcCC------------------------------CCchHHHHHHH
Confidence            988776665555555554443333221110     0000                              11235667788


Q ss_pred             HHHhhcC-CceeEEeecCCCChhHHHHHHHc-CCeeeeccccccccCeeeecCCCCCcccccccCcCCcEEEEeeCCCC-
Q 006530          385 KIQSAIG-ISKAGVSGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETN-  461 (641)
Q Consensus       385 ~~~~~l~-~~r~i~~gG~~l~~~l~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~-  461 (641)
                      +++..++ .+|.+++||+++++++.++++.. + +++++||+||++...+.........+++|.|+++++++|+|.+.. 
T Consensus       421 ~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~~-~l~~~YG~TEt~~~~~~~~~~~~~~~svG~p~~g~evkI~d~~~~~  499 (700)
T PTZ00216        421 APRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVCCGGIQRTGDLEPNAVGQLLKGVEMKLLDTEEYK  499 (700)
T ss_pred             HHHHHhCCcEEEEEECCCCCCHHHHHHHHHHhh-hHhhccCcccccccccccCCCCCCCCCcCCcCCCeEEEEeechhhc
Confidence            8888885 57999999999999997777654 6 999999999998776655555556789999999999999996432 


Q ss_pred             ccCCCCCCceEEEecCcccccccCCchhhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCcee
Q 006530          462 EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGEN  541 (641)
Q Consensus       462 ~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~  541 (641)
                      ...+++..|||+|+||+++.||+++|+.|.++|+.+|||+|||+|++++          ||.|+|+||+||+|++++|++
T Consensus       500 ~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~----------dG~l~i~GR~kd~ik~~~G~~  569 (700)
T PTZ00216        500 HTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAA----------NGTLRIIGRVKALAKNCLGEY  569 (700)
T ss_pred             cCCCCCCCceEEEcCCcccchhcCChhHhhhhccccCCeeccceEEEcC----------CCcEEEEEehHhheecCCCce
Confidence            2345567899999999999999999999999998899999999999999          999999999999998569999


Q ss_pred             eccHHhHHHHhcCcccce---EEEEecCCCceEEEEecCHHHHHHHHHHcCCCCCChh-hcChHHHHHHHHHHHHhHhc-
Q 006530          542 VEPLELEEAALRSSLIRQ---IVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADAS-ELSKEKTISLLYGELRKWTS-  616 (641)
Q Consensus       542 v~p~~iE~~l~~~p~V~~---~~v~g~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~~~~-  616 (641)
                      |+|.+||+++.+||.|.+   +++++..++.++|+|+++.+.+..+++++++. .+.. -...+++++.+.+.+.+... 
T Consensus       570 I~p~eIE~~l~~~p~V~~~~~~v~~~~~~~~l~a~vv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~  648 (700)
T PTZ00216        570 IALEALEALYGQNELVVPNGVCVLVHPARSYICALVLTDEAKAMAFAKEHGIE-GEYPAILKDPEFQKKATESLQETARA  648 (700)
T ss_pred             eccHHHHHHHhcCcCcccceEEEEEecCCceEEEEEecCHHHHHHHHHHcCCC-CCHHHHhcCHHHHHHHHHHHHHHHHh
Confidence            999999999999999996   34445566789999999999999999888764 2222 24556778888888876632 


Q ss_pred             ---cCCCccccEEEecCCCCCCCCccc
Q 006530          617 ---KCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       617 ---~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                         ...++|++|++++++|+++||.||
T Consensus       649 ~~l~~~e~i~~~~~~~~~f~~~~g~lT  675 (700)
T PTZ00216        649 AGRKSFEIVRHVRVLSDEWTPENGVLT  675 (700)
T ss_pred             cCCCCceeEeEEEEECCCCCCCCCCCC
Confidence               233799999999999999999987

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.2e-66  Score=574.77  Aligned_cols=488  Identities=28%  Similarity=0.442  Sum_probs=402.6

Q ss_pred             hHHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q 006530           23 GFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN  102 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~  102 (641)
                      .+....++.+..+|+++++++.+... ++||+||.++++++|..|.+.|+++||+|+|+++|++++++++|||+++|+++
T Consensus        12 ~~~~~l~~~a~~~~~~~a~~~~~~~~-~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~~Gav~   90 (534)
T COG0318          12 TLASLLERAARRNPDRPALIFLGRGG-RLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVA   90 (534)
T ss_pred             cHHHHHHHHHHhCCCceEEEEcCCCc-eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCEEE
Confidence            45666666777788888887765432 69999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCc-ccHHHHHHhhh
Q 006530          103 VVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPV-FSYDEIIDLGR  181 (641)
Q Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  181 (641)
                      +|+||.+...++.++++.++++.++++.. +...+.......+....+....... .         .. ..++++.....
T Consensus        91 vpln~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~  159 (534)
T COG0318          91 VPLNPRLTPRELAYILNDAGAKVLITSAE-FAALLEAVAEALPVVLVVLLVGDAD-D---------RLPITLEALAAEGP  159 (534)
T ss_pred             eecCcccCHHHHHHHHHhcCCeEEEEccc-chhHHHHHhccCCcceEEEeccccc-c---------cccccHHHHhhccC
Confidence            99999999999999999999999999974 4444444443332222222221111 0         00 24454432221


Q ss_pred             hhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcC--CCCCCEEEEECChhhHH
Q 006530          182 ESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP--AENGDKFLSMLPPWHVY  259 (641)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~--~~~~d~~l~~~pl~~~~  259 (641)
                      ...            ......+++|+++++|||||||.||||++||+|+..+...+...+.  +.+.|++++++|++|.+
T Consensus       160 ~~~------------~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~  227 (534)
T COG0318         160 GPD------------ADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIF  227 (534)
T ss_pred             Ccc------------cccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHH
Confidence            111            1112267999999999999999999999999999999999888888  89999999999999999


Q ss_pred             HHHHhHhh-hhcCeeEEec-----chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHH
Q 006530          260 ERACGYFI-FSRGIELMYT-----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAY  333 (641)
Q Consensus       260 g~~~~~~~-l~~G~~~v~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (641)
                      |+...+.+ +..|+++++.     ++..++..+.++++|++.++|+++..++.......                     
T Consensus       228 Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~---------------------  286 (534)
T COG0318         228 GLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDD---------------------  286 (534)
T ss_pred             HHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCc---------------------
Confidence            99987666 8999998884     46789999999999999999999999876433221                     


Q ss_pred             HHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcC-CceeEEeecCCCChhH-HHHH
Q 006530          334 TAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSGGGSLPMHI-DLFY  411 (641)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~r~i~~gG~~l~~~l-~~~~  411 (641)
                                                                            ..+. ++|.+++||++++.++ +++.
T Consensus       287 ------------------------------------------------------~~~~~~lr~~~~gg~~~~~~~~~~~~  312 (534)
T COG0318         287 ------------------------------------------------------DDLSSSLRLVLSGGAPLPPELLERFE  312 (534)
T ss_pred             ------------------------------------------------------cccccceEEEEecCCcCCHHHHHHHH
Confidence                                                                  1122 2599999999999987 6666


Q ss_pred             HHcC-CeeeeccccccccCeeeecCCCC--CcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCch
Q 006530          412 EAIG-VKVQVGYGLTESSPVIAARRPTC--NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPS  488 (641)
Q Consensus       412 ~~~~-~~v~~~yG~tE~~~~~~~~~~~~--~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~  488 (641)
                      +.++ ..+++.||+||+++.++.+....  ...+++|.|+|+++++|+|+++++++| |++|||+|+||+++.||+++|+
T Consensus       313 ~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~~p-g~vGei~irgp~v~~GY~~~pe  391 (534)
T COG0318         313 ERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP-GEVGEIWVRGPNVMKGYWNRPE  391 (534)
T ss_pred             HHhCCCceEEeecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCCCCccCC-CCceEEEEECchhhhhhcCChH
Confidence            6787 57999999999998777766655  467788999999999999988776777 9999999999999999999999


Q ss_pred             hhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC
Q 006530          489 ATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR  568 (641)
Q Consensus       489 ~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~  568 (641)
                      .|.++|..+|||+|||+|++|+          +|+++|.||.+|+|+. +|++|+|.|||+++.+||.|.+|+|+|.+|+
T Consensus       392 ~t~~~f~~~gW~~TGDlg~~d~----------~G~l~i~gR~kd~I~~-gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~  460 (534)
T COG0318         392 ATAEAFDEDGWLRTGDLGYVDE----------DGYLYIVGRLKDLIIS-GGENIYPEEIEAVLAEHPAVAEAAVVGVPDE  460 (534)
T ss_pred             HHHHhhccCCeeeecceEEEcC----------CccEEEEeccceEEEe-CCeEECHHHHHHHHHhCCCcceEEEEeCCCC
Confidence            9999886569999999999999          9999999999999996 9999999999999999999999999999875


Q ss_pred             ----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          569 ----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       569 ----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                          .+.|+|+++++.              ....+.+++.++|+++++.|+     .|+++.++++.|.+.+||+.
T Consensus       461 ~~Ge~~~a~v~~~~~~--------------~~~~~~~~i~~~~~~~l~~~~-----~P~~v~~v~~lP~t~sGKi~  517 (534)
T COG0318         461 RWGERVVAVVVLKPGG--------------DAELTAEELRAFLRKRLALYK-----VPRIVVFVDELPRTASGKID  517 (534)
T ss_pred             ccCceEEEEEEEcCCC--------------CCCCCHHHHHHHHHhhhhccc-----CCeEEEEeCCCCCCCchhhh
Confidence                455888887531              023478999999999999999     88899999999999999973

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=1.1e-65  Score=548.10  Aligned_cols=467  Identities=23%  Similarity=0.290  Sum_probs=376.0

Q ss_pred             hhhhhhcccC--CceEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEEecCCCCCHH
Q 006530           36 ATRIRISRRN--HRFRVFCESKLEQEILDFAEGLRV-IGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSE  112 (641)
Q Consensus        36 ~~~~a~~~~~--~~~~~~Ty~eL~~~~~~lA~~L~~-~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v~l~~~~~~~  112 (641)
                      +++.|++.++  +..+++||+||.+.++++|+.|++ .|+ +||+|+|++|+.+|+++++|||+++|++++|+.+.++++
T Consensus        24 ~~~~aii~~~e~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~riGAI~~~vf~~f~~~  102 (528)
T COG0365          24 PDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAE  102 (528)
T ss_pred             CCceEEEEEcCCCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHHcCCEEeecccCCCHH
Confidence            4677776542  233999999999999999999987 578 999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCceEEEecChhhHHHHHHh--hcccc-cccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhhhcccCC
Q 006530          113 ELLHIYNHSESVALAVENPEFFNRIAET--LCSKA-AMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSD  189 (641)
Q Consensus       113 ~l~~~l~~~~~~~li~~~~~~~~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (641)
                      .+.+.+++++++++|+++... .+.+..  ..... .+..+++....            . ..|.+........      
T Consensus       103 al~~Ri~d~~~k~vit~d~~~-~~gk~~~~~~~~~~~~~~~iv~~r~------------~-~~~~~~~~~~~~~------  162 (528)
T COG0365         103 AVADRIADLGPKVLIADDGTF-RNGKEIALLEDADAVLSSVVVVPRL------------G-LWYDEAVEKASEK------  162 (528)
T ss_pred             HHHHHHHccCCCEEEEecccc-cccccccchhHHHHhhcceEEeccc------------c-ccHHHHhhccCCC------
Confidence            999999999999999986322 211100  00000 00012222211            1 4566655543322      


Q ss_pred             CchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHH-HHhhhcCCCCCCEEEEECChhhHHHHHH-hHhh
Q 006530          190 SNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR-SLYDIVPAENGDKFLSMLPPWHVYERAC-GYFI  267 (641)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~-~~~~~~~~~~~d~~l~~~pl~~~~g~~~-~~~~  267 (641)
                             ..+...+.+|+++++|||||||.||||+++|+.++.... .....+.+.++|++.+..++.|+.|.++ .+.+
T Consensus       163 -------~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v~~p  235 (528)
T COG0365         163 -------FEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSP  235 (528)
T ss_pred             -------CCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHHHHHH
Confidence                   223457899999999999999999999999987655544 4445677889999999999999999988 7888


Q ss_pred             hhcCeeEEec------chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhHhc
Q 006530          268 FSRGIELMYT------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYE  341 (641)
Q Consensus       268 l~~G~~~v~~------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (641)
                      |.+|+++++.      ++..+++.++++++|.++..|+.++.|.+... .                              
T Consensus       236 L~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~-~------------------------------  284 (528)
T COG0365         236 LASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGL-G------------------------------  284 (528)
T ss_pred             HhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC-c------------------------------
Confidence            9999999874      26789999999999999999999999876421 0                              


Q ss_pred             ccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHcCCeeee
Q 006530          342 GFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQV  420 (641)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~~~~v~~  420 (641)
                                                                  -+.+++++|.+.+.||+++++. +.+.+.+|++|.+
T Consensus       285 --------------------------------------------~~~dlssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d  320 (528)
T COG0365         285 --------------------------------------------EPYDLSSLRVLGSAGEPLNPEAFEWFYSALGVWILD  320 (528)
T ss_pred             --------------------------------------------ccccchhheeeeccCCCCCHHHHHHHHHHhCCCEec
Confidence                                                        0146777899999999999998 5555667999999


Q ss_pred             ccccccccCeeeecCCCCCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecC--cccccccCCchhhhhccCCCC
Q 006530          421 GYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS--QVMQGYFKNPSATKQALDEDG  498 (641)
Q Consensus       421 ~yG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~--~~~~gY~~~~~~~~~~~~~~g  498 (641)
                      .||+||++..+....+ ...+++.|.|+||+++.++|++ ++++++|+ |+|+++.+  +++++|++||+.+.++|... 
T Consensus       321 ~~gqTEtg~~~~~~~~-~~~~g~~g~p~pG~~~~vvdd~-g~~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~-  396 (528)
T COG0365         321 IYGQTETGMGFIAGRP-PVKNGSSGLPLPGYAVRRVDDE-GNPVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFGR-  396 (528)
T ss_pred             cccccccCccccCCCC-CcCCCCCCCCCCCceeEEECCC-CCcCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhhc-
Confidence            9999999966555544 4455666999999999999966 99999999 99999987  99999999999999998533 


Q ss_pred             ccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC----ceEEEE
Q 006530          499 WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAII  574 (641)
Q Consensus       499 ~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----~~~a~v  574 (641)
                      ||.|||.+++|+          ||+++|+||.||+|++ .|++|.|.|||++|.+||+|.||+|+|.+|+    .+.|+|
T Consensus       397 ~y~tGD~~~~De----------dGy~~i~GR~DDvI~v-sG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afV  465 (528)
T COG0365         397 WYRTGDWAERDE----------DGYFWLHGRSDDVIKV-SGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFV  465 (528)
T ss_pred             eeecCceeEEcc----------CCCEEEEeeccceEec-cCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEE
Confidence            999999999999          9999999999999997 9999999999999999999999999999764    466899


Q ss_pred             ecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCcc
Q 006530          575 VPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  639 (641)
Q Consensus       575 v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l  639 (641)
                      +++++.                ..+  +|.+.+++.+++..-+ ...|++|.+++++|.+.||||
T Consensus       466 vL~~g~----------------~~~--~L~~ei~~~vr~~~~~-~~~p~~i~fv~~LPkT~sGKI  511 (528)
T COG0365         466 VLAAGV----------------EPN--ELAEEIRRHVARNIGP-HAIPRKIRFVDELPKTASGKI  511 (528)
T ss_pred             EecCCC----------------ChH--HHHHHHHHHHHhccCc-ccCCceEEEecCCCCCCcccH
Confidence            998652                111  4555454444443333 228999999999999999997

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=1.3e-63  Score=563.59  Aligned_cols=512  Identities=20%  Similarity=0.293  Sum_probs=397.8

Q ss_pred             hHHHHHhhhhhhhhhhhhhccc--CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCC
Q 006530           23 GFRVFTRNCVDAVATRIRISRR--NHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGA  100 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~~--~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~  100 (641)
                      .+..++++++.+.|+++++...  ++.++++||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus        40 ~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~Ga  119 (614)
T PRK08180         40 RLTDRLVHWAQEAPDRVFLAERGADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGV  119 (614)
T ss_pred             cHHHHHHHHHHHCCCCceeeeccCCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCC
Confidence            4455566777788999988764  35578999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCC-----HHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHH
Q 006530          101 INVVRGSRSS-----SEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDE  175 (641)
Q Consensus       101 ~~v~l~~~~~-----~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  175 (641)
                      +++|+++.++     .+++.+++++++++++|+++............. ... .++...+...        .....+|.+
T Consensus       120 v~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-~~~-~~i~~~~~~~--------~~~~~~~~~  189 (614)
T PRK08180        120 PYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVP-ADV-EVVAVRGAVP--------GRAATPFAA  189 (614)
T ss_pred             eEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhcc-CCc-eEEEecCCCC--------CcccccHHH
Confidence            9999999998     799999999999999999864222221111111 112 2222221100        011245666


Q ss_pred             HHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCC--CCCEEEEEC
Q 006530          176 IIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAE--NGDKFLSML  253 (641)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~--~~d~~l~~~  253 (641)
                      ++........          ........++|+++|+|||||||.||||++||+++...+......++..  .++++++++
T Consensus       190 ~~~~~~~~~~----------~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~l  259 (614)
T PRK08180        190 LLATPPTAAV----------DAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWL  259 (614)
T ss_pred             Hhccccccch----------hhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEec
Confidence            6543211000          0111234678999999999999999999999999998888777666653  568999999


Q ss_pred             ChhhHHHHHH-hHhhhhcCeeEEecc-------hHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHH
Q 006530          254 PPWHVYERAC-GYFIFSRGIELMYTA-------VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARA  325 (641)
Q Consensus       254 pl~~~~g~~~-~~~~l~~G~~~v~~~-------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  325 (641)
                      |++|++++.. .+.++..|+++++.+       ...+++.++++++|+++++|.++..+.+.......            
T Consensus       260 Pl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~------------  327 (614)
T PRK08180        260 PWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAA------------  327 (614)
T ss_pred             chHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchh------------
Confidence            9999999865 556789999998843       23678889999999999999999998775432100            


Q ss_pred             HHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCCh
Q 006530          326 LIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPM  405 (641)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~  405 (641)
                                                                                 .....++++|.+++||+++++
T Consensus       328 -----------------------------------------------------------~~~~~~~~lr~v~~gGa~l~~  348 (614)
T PRK08180        328 -----------------------------------------------------------LRRRFFSRLKLLFYAGAALSQ  348 (614)
T ss_pred             -----------------------------------------------------------hhhhhccceeEEEEccCCCCH
Confidence                                                                       001234567999999999999


Q ss_pred             hHHHHHHH-----cC--CeeeeccccccccCeeeecCCCCCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCc
Q 006530          406 HIDLFYEA-----IG--VKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQ  478 (641)
Q Consensus       406 ~l~~~~~~-----~~--~~v~~~yG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~  478 (641)
                      ++.+.+..     +|  .++++.||+||++.+++........++++|.|++|++++|+++        |..|||+++|++
T Consensus       349 ~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~d~--------~~~GEi~vrg~~  420 (614)
T PRK08180        349 DVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGPLSRAGNIGLPAPGCEVKLVPV--------GGKLEVRVKGPN  420 (614)
T ss_pred             HHHHHHHHHHHhhcCCCceeeeeecccccCCceEecccccCCCCcccCccCCcEEEEecC--------CCCcEEEEecCc
Confidence            88444433     33  6899999999998776655444556789999999999999874        345999999999


Q ss_pred             ccccccCCchhhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeec--cHHhHHHHhcCcc
Q 006530          479 VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVE--PLELEEAALRSSL  556 (641)
Q Consensus       479 ~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~--p~~iE~~l~~~p~  556 (641)
                      ++.||+++|+.+.+.|+.+|||+|||+|++++..      .++|.++|.||++|+|++++|++|+  |.|+|..+.+||.
T Consensus       421 v~~GY~~~p~~t~~~~~~dgw~~TGDlg~~~~~~------d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~  494 (614)
T PRK08180        421 VTPGYWRAPELTAEAFDEEGYYRSGDAVRFVDPA------DPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPL  494 (614)
T ss_pred             cchhhcCChhHhHhhcccCCceeccceEEecCCc------CCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCch
Confidence            9999999999999999889999999999993100      0078999999999999877898776  7889999999999


Q ss_pred             cceEEEEecCCCceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCC---CccccEEEecCCCC
Q 006530          557 IRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCS---FQIGPIHVVDEPFT  633 (641)
Q Consensus       557 V~~~~v~g~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~---~~~~~i~~~~~~~~  633 (641)
                      |.+|+|+|.+++.++|+|+++++....++.... ........+.++++++++++|++|+....   .+|++|.+++++|+
T Consensus       495 V~~a~V~g~~~~~~~a~V~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~p~  573 (614)
T PRK08180        495 VQDVVITGHDRDEIGLLVFPNLDACRRLAGLLA-DASLAEVLAHPAVRAAFRERLARLNAQATGSSTRVARALLLDEPPS  573 (614)
T ss_pred             hheEEEEcCCCCceEEEEEcCHHHHHHHHhhcc-cCCHHHHhcCHHHHHHHHHHHHHHHhhccccHhheeEEEEecCCCC
Confidence            999999999999999999999987766664431 11111235678899999999999996543   48999999999999


Q ss_pred             CCCCccc
Q 006530          634 VNFLCLA  640 (641)
Q Consensus       634 ~~~~~l~  640 (641)
                      +++||+|
T Consensus       574 ~~~gk~t  580 (614)
T PRK08180        574 LDAGEIT  580 (614)
T ss_pred             CccCccC
Confidence            9999987

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.4e-62  Score=556.15  Aligned_cols=509  Identities=21%  Similarity=0.293  Sum_probs=393.4

Q ss_pred             HHHHHhhhhhhhhhhhhhccc---CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCC
Q 006530           24 FRVFTRNCVDAVATRIRISRR---NHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGA  100 (641)
Q Consensus        24 ~~~~~~~~~~~~~~~~a~~~~---~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~  100 (641)
                      +.+.+++++.+.|+++++...   ++.++++||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus        51 l~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~  130 (624)
T PRK12582         51 IPHLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGV  130 (624)
T ss_pred             HHHHHHHHHHHCCCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCC
Confidence            445566667778888887753   35678999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCH-----HHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHH
Q 006530          101 INVVRGSRSSS-----EELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDE  175 (641)
Q Consensus       101 ~~v~l~~~~~~-----~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  175 (641)
                      +++|++|.++.     +++.++++.++++++|+++.............. ..+. +.......        ......+.+
T Consensus       131 v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~-i~~~~~~~--------~~~~~~~~~  200 (624)
T PRK12582        131 PAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDLL-DVTV-VHVTGPGE--------GIASIAFAD  200 (624)
T ss_pred             eEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhhc-CceE-EEEcCCCc--------ccccccHHH
Confidence            99999999875     899999999999999998643333222222211 2222 22221110        112345666


Q ss_pred             HHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCC---CCEEEEE
Q 006530          176 IIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAEN---GDKFLSM  252 (641)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~---~d~~l~~  252 (641)
                      +.........          ........++++++|+|||||||.||||++||+++...+...........   .++++.+
T Consensus       201 ~~~~~~~~~~----------~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~  270 (624)
T PRK12582        201 LAATPPTAAV----------AAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDW  270 (624)
T ss_pred             HhhcCCcchh----------hhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEe
Confidence            5543211000          00112346789999999999999999999999999887776655544443   5899999


Q ss_pred             CChhhHHHHHHh-HhhhhcCeeEEecc-------hHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHH
Q 006530          253 LPPWHVYERACG-YFIFSRGIELMYTA-------VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVAR  324 (641)
Q Consensus       253 ~pl~~~~g~~~~-~~~l~~G~~~v~~~-------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~  324 (641)
                      +|++|.+++... +.++..|+++++.+       ...+++.++++++|++.++|.++..+.+......    ..      
T Consensus       271 lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~----~~------  340 (624)
T PRK12582        271 MPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDD----AL------  340 (624)
T ss_pred             chHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCH----HH------
Confidence            999999998764 45688999998853       2346677889999999999999988865432210    00      


Q ss_pred             HHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCC
Q 006530          325 ALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLP  404 (641)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~  404 (641)
                                                                                   ....++++|.+++||++++
T Consensus       341 -------------------------------------------------------------~~~~~~slr~i~~gGa~l~  359 (624)
T PRK12582        341 -------------------------------------------------------------RRSFFKNLRLMAYGGATLS  359 (624)
T ss_pred             -------------------------------------------------------------HHHHhhheeEEEecCCCCC
Confidence                                                                         0023455699999999999


Q ss_pred             hhHHHHHHH-----c--CCeeeeccccccccCeeeecCCCCCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecC
Q 006530          405 MHIDLFYEA-----I--GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS  477 (641)
Q Consensus       405 ~~l~~~~~~-----~--~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~  477 (641)
                      +++.+.+..     +  +.++++.||+||++.++.........++++|+|++|++++|++        .|+.|||+++|+
T Consensus       360 ~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~~--------~G~~GEl~vrg~  431 (624)
T PRK12582        360 DDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWDTERVGLIGLPLPGVELKLAP--------VGDKYEVRVKGP  431 (624)
T ss_pred             HHHHHHHHHHHHhhcCCCceEEeccccccccceeecccCCCCCCCCCCcCCCCcEEEEcc--------CCCceEEEEECC
Confidence            998554444     2  3689999999999876654333445678999999999999863        467899999999


Q ss_pred             cccccccCCchhhhhccCCCCccccCceeEE-cCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhH--HHHhcC
Q 006530          478 QVMQGYFKNPSATKQALDEDGWLNTGDIGWI-APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELE--EAALRS  554 (641)
Q Consensus       478 ~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~-~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE--~~l~~~  554 (641)
                      +++.||+++|+.+.+.|+.+|||+|||+|++ +++.+       +|.++|.||+||+|++++|++|+|.+||  .++.+|
T Consensus       432 ~v~~GY~~~p~~t~~~f~~dgw~~TGDlg~~~d~~~~-------~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~  504 (624)
T PRK12582        432 NVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDP-------EKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACS  504 (624)
T ss_pred             cccccccCCccchhhhcCccCCccccceEEecCCcCC-------CCceEEeccchhhEecCCCcEechHHHHHHHHHhcC
Confidence            9999999999999999988999999999998 43111       6899999999999998789999998885  788899


Q ss_pred             cccceEEEEecCCCceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCC--C-ccccEEEecCC
Q 006530          555 SLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCS--F-QIGPIHVVDEP  631 (641)
Q Consensus       555 p~V~~~~v~g~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~--~-~~~~i~~~~~~  631 (641)
                      |.|.+|+|+|.+++.++++|+++......++...+..  .....+.+++.++++++|+++|..++  . +|+++.+++++
T Consensus       505 p~V~~a~VvG~~~~~~g~lv~p~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  582 (624)
T PRK12582        505 PVIHDAVVAGQDRAFIGLLAWPNPAACRQLAGDPDAA--PEDVVKHPAVLAILREGLSAHNAEAGGSSSRIARALLMTEP  582 (624)
T ss_pred             cchheEEEEcCCCCcEEEEEecCHHHHHHHHhcCCCC--HHHHhcCHHHHHHHHHHHHHHHhhcCCChhheEEEEEeCCC
Confidence            9999999999999999999999988766655432210  11234668899999999999997655  5 99999999999


Q ss_pred             CCCCCCccc
Q 006530          632 FTVNFLCLA  640 (641)
Q Consensus       632 ~~~~~~~l~  640 (641)
                      |++++||+|
T Consensus       583 ~~~~~g~~t  591 (624)
T PRK12582        583 PSIDAGEIT  591 (624)
T ss_pred             CCccCCcCC
Confidence            999999987

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.4e-63  Score=558.98  Aligned_cols=515  Identities=17%  Similarity=0.201  Sum_probs=388.9

Q ss_pred             hhhhhhhHHHHHhhhhhh------hhhhhhhccc---CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChh
Q 006530           17 LDYHRHGFRVFTRNCVDA------VATRIRISRR---NHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCR   87 (641)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~------~~~~~a~~~~---~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e   87 (641)
                      .+||...-.+.+.+..++      .++++|++..   ++..+++||+||.++++++|..|.++|+++||+|+++++|+++
T Consensus        50 ~~wf~~~~~n~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e  129 (647)
T PTZ00237         50 PDWFKGGELNTCYNVLDIHVKNPLKRDQDALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLE  129 (647)
T ss_pred             hhhCCCCeeeHHHHHHHHhhcccCCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH
Confidence            466666544444444433      4688888763   2336889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCceEEEecCh--------hhHHHHHHhhcccc-cccEEEEEeCCCC
Q 006530           88 WLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVALAVENP--------EFFNRIAETLCSKA-AMRFIILLWGKKS  158 (641)
Q Consensus        88 ~i~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~--------~~~~~~~~~~~~~~-~~~~~v~~~~~~~  158 (641)
                      +++++|||+++|++++|+++.++.+++.+++++++++++|+++.        .+...+.+...... ..+.++.......
T Consensus       130 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~  209 (647)
T PTZ00237        130 PLIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDI  209 (647)
T ss_pred             HHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCc
Confidence            99999999999999999999999999999999999999999752        12233333332111 1334444322110


Q ss_pred             --CCCC----CccCCCCcccHHHHHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHH-HH
Q 006530          159 --SVAP----DIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKN-LL  231 (641)
Q Consensus       159 --~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~-l~  231 (641)
                        ....    ..........|++++..........        ........++|+++|+|||||||.||||+++|++ +.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~  281 (647)
T PTZ00237        210 TSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSP--------FYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLV  281 (647)
T ss_pred             ccccccccccccCCCcccccHHHHHhhhccccCCC--------CCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHH
Confidence              0000    0000002245666654321110000        0122345789999999999999999999999998 44


Q ss_pred             HHHHHHhhhcCCCCCCEEEEECChhhHHHHHHhHhhhhcCeeEEecc---------hHHHHHHHhhhCCeEEEeCcHHHH
Q 006530          232 HQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA---------VRNLKDDLQRYQPHYMISVPLVYE  302 (641)
Q Consensus       232 ~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~---------~~~~~~~i~~~~~t~~~~~P~~~~  302 (641)
                      .............+++++++..|++|+.+....+.++..|+++++.+         +..+++.++++++|++.++|+++.
T Consensus       282 ~~~~~~~~~~~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~  361 (647)
T PTZ00237        282 GLKYYWRSIIEKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIR  361 (647)
T ss_pred             HHHHHHHHhcCCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHH
Confidence            43333344566778899999999999876666778899999999853         467999999999999999999998


Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 006530          303 TLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLV  382 (641)
Q Consensus       303 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (641)
                      .+.+......    ..                                                                
T Consensus       362 ~l~~~~~~~~----~~----------------------------------------------------------------  373 (647)
T PTZ00237        362 YLIKTDPEAT----II----------------------------------------------------------------  373 (647)
T ss_pred             HHHhhCcccc----cc----------------------------------------------------------------
Confidence            8865311000    00                                                                


Q ss_pred             HHHHHhhcCCceeEEeecCCCChhHHHHH-HHcCCeeeeccccccccCeeeecCCC-CCcccccccCcCCcEEEEeeCCC
Q 006530          383 YKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAIGVKVQVGYGLTESSPVIAARRPT-CNVLGSVGHPINHTEIKIVDAET  460 (641)
Q Consensus       383 ~~~~~~~l~~~r~i~~gG~~l~~~l~~~~-~~~~~~v~~~yG~tE~~~~~~~~~~~-~~~~~~~G~~~~~~~v~i~d~~~  460 (641)
                        .-..+++++|.+++||+++++++.+++ +.+|.++++.||+||+++.+...... ....+++|.|++|++++|+| ++
T Consensus       374 --~~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d-~~  450 (647)
T PTZ00237        374 --RSKYDLSNLKEIWCGGEVIEESIPEYIENKLKIKSSRGYGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILS-ED  450 (647)
T ss_pred             --ccccCcchheEEEecCccCCHHHHHHHHHhcCCCEEeeechHHhChhhhccCCCCCCCCCCCccCcCCceEEEEC-CC
Confidence              000235567999999999999985554 55799999999999998655433322 23347899999999999999 47


Q ss_pred             CccCCCCCCceEEEecC---cccccccCCchhhhhccCC-CCccccCceeEEcCCCCCCCccccCceEEEeccccceEEe
Q 006530          461 NEVLPAGSKGIVKVRGS---QVMQGYFKNPSATKQALDE-DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVL  536 (641)
Q Consensus       461 ~~~~~~g~~Gel~v~g~---~~~~gY~~~~~~~~~~~~~-~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~  536 (641)
                      +++++.|+.|||++++|   +++.||+++++.+.+.|.. +|||+|||+|++++          ||+++|+||+||+|++
T Consensus       451 g~~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g~~~TGDlg~~d~----------dG~l~i~GR~dd~i~~  520 (647)
T PTZ00237        451 GKELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSGDLGFKDE----------NGYYTIVSRSDDQIKI  520 (647)
T ss_pred             CCCCCCCCceEEEEeccCCchhhCceeCCHHHHHHHHhCCCCEEECCcEEEECC----------CCeEEEEeccCCEEEE
Confidence            88999999999999986   7899999999999887754 79999999999999          9999999999999997


Q ss_pred             CCceeeccHHhHHHHhcCcccceEEEEecCC----CceEEEEecCHHHHHHHHHHcCCCCCChhhcC----hHHHHHHHH
Q 006530          537 STGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKRLSIVHADASELS----KEKTISLLY  608 (641)
Q Consensus       537 ~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~----~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~  608 (641)
                       +|++|+|.|||++|.+||.|.||+|+|.++    +.+.++|+++++.             +....+    .++|+++++
T Consensus       521 -~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~~~-------------~~~~~~~~~l~~~i~~~~~  586 (647)
T PTZ00237        521 -SGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQ-------------SNQSIDLNKLKNEINNIIT  586 (647)
T ss_pred             -CCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEeccCc-------------cccCCCHHHHHHHHHHHHH
Confidence             999999999999999999999999999876    4577888887431             001122    245667777


Q ss_pred             HHHHhHhccCCCccccEEEecCCCCCCCCcc
Q 006530          609 GELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  639 (641)
Q Consensus       609 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l  639 (641)
                      ++|++|+     +|++|+++++.|.+.+||+
T Consensus       587 ~~l~~~~-----~P~~i~~v~~lP~T~sGKi  612 (647)
T PTZ00237        587 QDIESLA-----VLRKIIIVNQLPKTKTGKI  612 (647)
T ss_pred             hhcCccc-----cCcEEEEcCCCCCCCCccE
Confidence            7777777     8889999999999999997

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=5.3e-62  Score=551.70  Aligned_cols=497  Identities=23%  Similarity=0.336  Sum_probs=398.3

Q ss_pred             hHHHHHhhhhhhhhhhhhhccc-----CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHh
Q 006530           23 GFRVFTRNCVDAVATRIRISRR-----NHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLA   97 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~~-----~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~   97 (641)
                      .+-+++++.++++|++.|+...     .+..+++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||++
T Consensus        26 t~~~~l~~~a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~lA~~~  105 (632)
T PRK07529         26 STYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGEA  105 (632)
T ss_pred             CHHHHHHHHHHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence            4456667777888999888652     12457899999999999999999999999999999999999999999999999


Q ss_pred             cCCEEEecCCCCCHHHHHHHHHhcCceEEEecCh----hhHHHHHHhhcccccccEEEEEeCCCCCCCCCc--------c
Q 006530           98 TGAINVVRGSRSSSEELLHIYNHSESVALAVENP----EFFNRIAETLCSKAAMRFIILLWGKKSSVAPDI--------V  165 (641)
Q Consensus        98 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------~  165 (641)
                      +| +++|+|+.++.+++.++++.++++++++++.    .....+.......+.++.++.++..........        .
T Consensus       106 ~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  184 (632)
T PRK07529        106 AG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIRRK  184 (632)
T ss_pred             hC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCcccccccccccccccccc
Confidence            99 5799999999999999999999999999752    334555555556666776665543211000000        0


Q ss_pred             CCCCcccHHHHHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCC
Q 006530          166 EEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAEN  245 (641)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~  245 (641)
                      .......|.+.+........           .......++++++++|||||||.||+|.+||++++..+......+++.+
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~  253 (632)
T PRK07529        185 AHARILDFDAELARQPGDRL-----------FSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGP  253 (632)
T ss_pred             cccccCCHHHHHhcCCCccc-----------cccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCC
Confidence            11233456555443221100           1112346799999999999999999999999999988877777788899


Q ss_pred             CCEEEEECChhhHHHHHH-hHhhhhcCeeEEecch---------HHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhc
Q 006530          246 GDKFLSMLPPWHVYERAC-GYFIFSRGIELMYTAV---------RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTS  315 (641)
Q Consensus       246 ~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~---------~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  315 (641)
                      ++++++.+|++|.++... .+.++..|+++++.++         ..+++.++++++|++.++|+++..+.+....     
T Consensus       254 ~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-----  328 (632)
T PRK07529        254 GDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVD-----  328 (632)
T ss_pred             CCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc-----
Confidence            999999999999999875 5677999999998642         4688899999999999999999888652100     


Q ss_pred             cHHHHHHHHHHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCcee
Q 006530          316 SAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKA  395 (641)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~  395 (641)
                                                                                             ..+++++|.
T Consensus       329 -----------------------------------------------------------------------~~~~~slr~  337 (632)
T PRK07529        329 -----------------------------------------------------------------------GHDISSLRY  337 (632)
T ss_pred             -----------------------------------------------------------------------CCCccceEE
Confidence                                                                                   013456699


Q ss_pred             EEeecCCCChhH-HHHHHHcCCeeeeccccccccCeeeecCCC-CCcccccccCcCCcEEEEeeC-CCC---ccCCCCCC
Q 006530          396 GVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPT-CNVLGSVGHPINHTEIKIVDA-ETN---EVLPAGSK  469 (641)
Q Consensus       396 i~~gG~~l~~~l-~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~-~~~~~~~G~~~~~~~v~i~d~-~~~---~~~~~g~~  469 (641)
                      +++||+++++++ +++.+.+|.++++.||+||++.++..+... ...++++|.|+|+++++|+.. +++   ++++.|+.
T Consensus       338 v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~  417 (632)
T PRK07529        338 ALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEV  417 (632)
T ss_pred             EEEcCCCCCHHHHHHHHHHhCCcEeeeecccccCcccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCc
Confidence            999999999998 445566799999999999998776655443 246789999999999998642 334   78999999


Q ss_pred             ceEEEecCcccccccCCchhhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHH
Q 006530          470 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEE  549 (641)
Q Consensus       470 Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~  549 (641)
                      |||+|+||.++.||++++ .+...|..+|||+|||+|++++          ||.+++.||.||+|+. +|++|+|.+||+
T Consensus       418 Gel~v~gp~v~~GY~~~~-~~~~~~~~~gw~~TGDlg~~d~----------dG~l~i~GR~~d~i~~-~G~~i~p~eIE~  485 (632)
T PRK07529        418 GVLCIAGPNVFSGYLEAA-HNKGLWLEDGWLNTGDLGRIDA----------DGYFWLTGRAKDLIIR-GGHNIDPAAIEE  485 (632)
T ss_pred             eEEEEECCCccccccCCc-cccccccCCCceEcCcEEEEcC----------CceEEEEecccCEEEe-CCEEECHHHHHH
Confidence            999999999999999865 4556666789999999999999          9999999999999997 999999999999


Q ss_pred             HHhcCcccceEEEEecCCC----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHh-HhccCCCcccc
Q 006530          550 AALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRK-WTSKCSFQIGP  624 (641)
Q Consensus       550 ~l~~~p~V~~~~v~g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-~~~~~~~~~~~  624 (641)
                      .|.+||+|.+|+|++.+++    .++++|++.++                ...+.++++++++++++. ++     .|++
T Consensus       486 ~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~----------------~~~~~~~l~~~~~~~l~~~~~-----~P~~  544 (632)
T PRK07529        486 ALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPG----------------ASATEAELLAFARDHIAERAA-----VPKH  544 (632)
T ss_pred             HHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCC----------------CCCCHHHHHHHHHHhcchhcc-----CCcE
Confidence            9999999999999998764    46678887653                345778999999999864 56     7888


Q ss_pred             EEEecCCCCCCCCccc
Q 006530          625 IHVVDEPFTVNFLCLA  640 (641)
Q Consensus       625 i~~~~~~~~~~~~~l~  640 (641)
                      |.++++.|.+.+||+.
T Consensus       545 i~~v~~lP~t~~GKi~  560 (632)
T PRK07529        545 VRILDALPKTAVGKIF  560 (632)
T ss_pred             EEEecCCCCCCCCccc
Confidence            9999999999999973

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.2e-62  Score=546.24  Aligned_cols=483  Identities=20%  Similarity=0.260  Sum_probs=397.8

Q ss_pred             hHHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q 006530           23 GFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN  102 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~  102 (641)
                      .+.++++++++++|+++|++++++   ++||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        50 ~~~~~~~~~a~~~pd~~Al~~~~~---~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~  126 (549)
T PRK07788         50 PFAGLVAHAARRAPDRAALIDERG---TLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARI  126 (549)
T ss_pred             hHHHHHHHHHHHCCCceEEEECCC---ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEE
Confidence            567777888889999999987664   49999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhh
Q 006530          103 VVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRE  182 (641)
Q Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (641)
                      +|+++.++.+++.++++.++++++++++ +....+.+.......++.++........      ......++++++.....
T Consensus       127 v~l~~~~~~~~l~~~l~~~~~~~ii~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~  199 (549)
T PRK07788        127 ILLNTGFSGPQLAEVAAREGVKALVYDD-EFTDLLSALPPDLGRLRAWGGNPDDDEP------SGSTDETLDDLIAGSST  199 (549)
T ss_pred             EEeCCCCCHHHHHHHHHhcCCcEEEECc-hhHHHHHhhccccccceEEEEecCcccc------CCcCcccHHHHhcCCCC
Confidence            9999999999999999999999999985 5555554433333333333222111110      01234567776653221


Q ss_pred             hhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHH
Q 006530          183 SRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERA  262 (641)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~  262 (641)
                      .               ..+...++.++++|||||||.||+|.++|+++...+......+++.++++++..+|++|.+++.
T Consensus       200 ~---------------~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~  264 (549)
T PRK07788        200 A---------------PLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWA  264 (549)
T ss_pred             C---------------CCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHH
Confidence            1               1122456789999999999999999999999999888888888899999999999999999998


Q ss_pred             HhHhhhhcCeeEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhH
Q 006530          263 CGYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRI  339 (641)
Q Consensus       263 ~~~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (641)
                      ..+.++..|+++++.   ++..+++.++++++|++.++|+++..+.+......                           
T Consensus       265 ~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~---------------------------  317 (549)
T PRK07788        265 HLTLAMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVL---------------------------  317 (549)
T ss_pred             HHHHHHHhCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCccccc---------------------------
Confidence            777889999999884   68899999999999999999999998875422100                           


Q ss_pred             hcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHcCCee
Q 006530          340 YEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKV  418 (641)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~~~~v  418 (641)
                                                                    ....++++|.+++||+++++.+ +.+.+.++..+
T Consensus       318 ----------------------------------------------~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l  351 (549)
T PRK07788        318 ----------------------------------------------AKYDTSSLKIIFVSGSALSPELATRALEAFGPVL  351 (549)
T ss_pred             ----------------------------------------------CCCCCCceeEEEEeCCCCCHHHHHHHHHHhCccc
Confidence                                                          0013455699999999999988 55566678899


Q ss_pred             eeccccccccCeeeecCCC-CCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccCCC
Q 006530          419 QVGYGLTESSPVIAARRPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED  497 (641)
Q Consensus       419 ~~~yG~tE~~~~~~~~~~~-~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~  497 (641)
                      ++.||+||++..+...... ...++++|.|+++++++|+| +++++++.|+.|||+++|+.++.||++++..   .. .+
T Consensus       352 ~~~YG~TE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~---~~-~~  426 (549)
T PRK07788        352 YNLYGSTEVAFATIATPEDLAEAPGTVGRPPKGVTVKILD-ENGNEVPRGVVGRIFVGNGFPFEGYTDGRDK---QI-ID  426 (549)
T ss_pred             eeccCcchhchhhccChhhhhhcCCCcccCCCCcEEEEEC-CCcCCCCCCCeEEEEEeCCCccccccCCCcc---cc-cC
Confidence            9999999987655443322 24567899999999999999 5688899999999999999999999998765   12 47


Q ss_pred             CccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC----ceEEE
Q 006530          498 GWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAI  573 (641)
Q Consensus       498 g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----~~~a~  573 (641)
                      |||+|||+|++++          ||.++|.||+||+|++ +|++|+|.+||+.|.+||+|.+++|++.+++    .+.++
T Consensus       427 g~~~TGDl~~~~~----------~g~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~  495 (549)
T PRK07788        427 GLLSSGDVGYFDE----------DGLLFVDGRDDDMIVS-GGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAF  495 (549)
T ss_pred             CceecCceEEEcC----------CCCEEEeccCcceEEE-CCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEE
Confidence            9999999999999          9999999999999997 9999999999999999999999999998765    46788


Q ss_pred             EecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          574 IVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       574 vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                      |+++++                ...+.++++++++++|+.|+     .|++|.++++.|.+.+||+.
T Consensus       496 vv~~~~----------------~~~~~~~l~~~~~~~l~~~~-----~P~~i~~v~~lP~t~~GKi~  541 (549)
T PRK07788        496 VVKAPG----------------AALDEDAIKDYVRDNLARYK-----VPRDVVFLDELPRNPTGKVL  541 (549)
T ss_pred             EEeCCC----------------CCCCHHHHHHHHHHhhhcCC-----CCcEEEEeCCCCCCCCcCEe
Confidence            887643                34677899999999999998     77889999999999999973

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=3.3e-62  Score=555.52  Aligned_cols=507  Identities=16%  Similarity=0.167  Sum_probs=388.3

Q ss_pred             hhhhhhhHHHHHhhh----hh-hhhhhhhhccc---CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhH
Q 006530           17 LDYHRHGFRVFTRNC----VD-AVATRIRISRR---NHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRW   88 (641)
Q Consensus        17 ~~~~~~~~~~~~~~~----~~-~~~~~~a~~~~---~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~   88 (641)
                      .+||...-.+.++++    ++ ..|+++|++..   ++..+++||+||.++++++|+.|++.|+++||+|+++++|++++
T Consensus        79 ~~wf~g~~~N~~~~~l~~~~~~~~~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~  158 (666)
T PLN02654         79 IEWFKGGKTNICYNCLDRNVEAGNGDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMEL  158 (666)
T ss_pred             ccccCCCEeeHHHHHHHHhhccCCCCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH
Confidence            466666544444443    33 36789998753   34468899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCceEEEecChhh--------HHHHHHhhccc----ccccEEEEEeCC
Q 006530           89 LVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVALAVENPEF--------FNRIAETLCSK----AAMRFIILLWGK  156 (641)
Q Consensus        89 i~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~--------~~~~~~~~~~~----~~~~~~v~~~~~  156 (641)
                      ++++|||+++|++++|+++.++.+++.+++++++++++|+++...        ...+.+.....    .....++.....
T Consensus       159 v~a~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (666)
T PLN02654        159 PIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQ  238 (666)
T ss_pred             HHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEeccc
Confidence            999999999999999999999999999999999999999986311        11222221111    111222221111


Q ss_pred             CCC-CCCCccCCCCcccHHHHHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHH-HH
Q 006530          157 KSS-VAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLH-QI  234 (641)
Q Consensus       157 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~-~~  234 (641)
                      ... .............|+++...... .            .......++|+++|+|||||||.||||+++|++++. ..
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~  305 (666)
T PLN02654        239 LAMKREDTKWQEGRDVWWQDVVPNYPT-K------------CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTA  305 (666)
T ss_pred             ccccccccccccCCcccHHHHhhcCCC-C------------CCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHH
Confidence            000 00000000011234444321100 0            112345789999999999999999999999999764 44


Q ss_pred             HHHhhhcCCCCCCEEEEECChhhHHHHHH-hHhhhhcCeeEEec-------chHHHHHHHhhhCCeEEEeCcHHHHHHHH
Q 006530          235 RSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-------AVRNLKDDLQRYQPHYMISVPLVYETLYS  306 (641)
Q Consensus       235 ~~~~~~~~~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~-------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~  306 (641)
                      ..+...++++++|++++.+|++|+++... .+.+|..|+++++.       ++..+++.++++++|+++.+|+++..|.+
T Consensus       306 ~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~  385 (666)
T PLN02654        306 TTFKYAFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMR  385 (666)
T ss_pred             HHHHHhcCCCCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHh
Confidence            55666788999999999999999998765 56779999999874       36789999999999999999999998865


Q ss_pred             HHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 006530          307 GIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKI  386 (641)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (641)
                      ......                                                                         .
T Consensus       386 ~~~~~~-------------------------------------------------------------------------~  392 (666)
T PLN02654        386 DGDEYV-------------------------------------------------------------------------T  392 (666)
T ss_pred             hCcccc-------------------------------------------------------------------------c
Confidence            321100                                                                         0


Q ss_pred             HhhcCCceeEEeecCCCChhH-HHHHHHcC---CeeeeccccccccCeeeecCCC--CCcccccccCcCCcEEEEeeCCC
Q 006530          387 QSAIGISKAGVSGGGSLPMHI-DLFYEAIG---VKVQVGYGLTESSPVIAARRPT--CNVLGSVGHPINHTEIKIVDAET  460 (641)
Q Consensus       387 ~~~l~~~r~i~~gG~~l~~~l-~~~~~~~~---~~v~~~yG~tE~~~~~~~~~~~--~~~~~~~G~~~~~~~v~i~d~~~  460 (641)
                      ..+++++|.++++|+++++++ +.+.+.+|   .++.+.||+||+++......+.  ...++++|.|++|++++|+| ++
T Consensus       393 ~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~  471 (666)
T PLN02654        393 RHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EK  471 (666)
T ss_pred             cCChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEEC-CC
Confidence            023455699999999999987 44566676   6899999999998766554432  34678999999999999999 56


Q ss_pred             CccCCCCCCceEEEec--CcccccccCCchhhhhccCC--CCccccCceeEEcCCCCCCCccccCceEEEeccccceEEe
Q 006530          461 NEVLPAGSKGIVKVRG--SQVMQGYFKNPSATKQALDE--DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVL  536 (641)
Q Consensus       461 ~~~~~~g~~Gel~v~g--~~~~~gY~~~~~~~~~~~~~--~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~  536 (641)
                      +++++.|+.|||++++  |+++.||+++++.+.+++..  +|||+|||+|++|+          ||.++|+||+||+|++
T Consensus       472 g~~~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGD~~~~d~----------dG~l~i~GR~dd~I~~  541 (666)
T PLN02654        472 GKEIEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSGDGCSRDK----------DGYYWLTGRVDDVINV  541 (666)
T ss_pred             CCCCCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEEEeCceEEECC----------CCcEEEeeeccCeEEe
Confidence            7888888899999998  78999999999988877632  79999999999999          9999999999999997


Q ss_pred             CCceeeccHHhHHHHhcCcccceEEEEecCCC----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHH
Q 006530          537 STGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELR  612 (641)
Q Consensus       537 ~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~  612 (641)
                       +|++|+|.|||++|.+||+|.|++|+|.+++    .+.++|+++++.             .......++|+++++++|.
T Consensus       542 -~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~-------------~~~~~l~~~l~~~~~~~L~  607 (666)
T PLN02654        542 -SGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGV-------------PYSEELRKSLILTVRNQIG  607 (666)
T ss_pred             -CCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCCC-------------CCCHHHHHHHHHHHHHhCC
Confidence             9999999999999999999999999998764    567888887541             0011123467788888888


Q ss_pred             hHhccCCCccccEEEecCCCCCCCCcc
Q 006530          613 KWTSKCSFQIGPIHVVDEPFTVNFLCL  639 (641)
Q Consensus       613 ~~~~~~~~~~~~i~~~~~~~~~~~~~l  639 (641)
                      .|+     .|+.|+++++.|.+.|||+
T Consensus       608 ~~~-----~P~~i~~v~~lP~T~sGKi  629 (666)
T PLN02654        608 AFA-----APDKIHWAPGLPKTRSGKI  629 (666)
T ss_pred             CCc-----CCCEEEECCCCCCCCCcCc
Confidence            888     7888999999999999997

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=1.3e-61  Score=548.73  Aligned_cols=503  Identities=16%  Similarity=0.159  Sum_probs=388.1

Q ss_pred             HHHHhhhhhhhhhhhhhccc---CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCE
Q 006530           25 RVFTRNCVDAVATRIRISRR---NHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAI  101 (641)
Q Consensus        25 ~~~~~~~~~~~~~~~a~~~~---~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~  101 (641)
                      .+.++++++..|+++|++..   ++..+++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++|++
T Consensus        55 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~~Gav  134 (628)
T TIGR02316        55 HNALDRHLDERGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAI  134 (628)
T ss_pred             HHHHHHHhCcCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence            34444455667899998763   355688999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHHhcCceEEEecChh--------hHHHHHHhhccc-ccccEEEEEeCCCCCCCCCccCCCCccc
Q 006530          102 NVVRGSRSSSEELLHIYNHSESVALAVENPE--------FFNRIAETLCSK-AAMRFIILLWGKKSSVAPDIVEEIPVFS  172 (641)
Q Consensus       102 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~--------~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~  172 (641)
                      ++|+++.++.+++.+++++++++++|+++..        ....+.+..... .....++++.........   .......
T Consensus       135 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~---~~~~~~~  211 (628)
T TIGR02316       135 HSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPMRL---IPGRDVD  211 (628)
T ss_pred             EEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCc---ccCcccc
Confidence            9999999999999999999999999997531        122222222222 234455555432111000   0011234


Q ss_pred             HHHHHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHH-HHHHHhhhcCCCCCCEEEE
Q 006530          173 YDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLH-QIRSLYDIVPAENGDKFLS  251 (641)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~-~~~~~~~~~~~~~~d~~l~  251 (641)
                      |.++........            .+.....++++++|+|||||||.||||+++|++++. ........++++++|++++
T Consensus       212 ~~~~~~~~~~~~------------~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~  279 (628)
T TIGR02316       212 YAALRTQHEDAQ------------VPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFS  279 (628)
T ss_pred             HHHHhhccccCC------------CCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEE
Confidence            555543221100            112234678999999999999999999999999753 3445566678999999999


Q ss_pred             ECChhhHHHHHH-hHhhhhcCeeEEec-------chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHH
Q 006530          252 MLPPWHVYERAC-GYFIFSRGIELMYT-------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVA  323 (641)
Q Consensus       252 ~~pl~~~~g~~~-~~~~l~~G~~~v~~-------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~  323 (641)
                      ..|+.|+.++.. .+.++..|+++++.       ++..+++.++++++|+++.+|+++..+.+......           
T Consensus       280 ~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-----------  348 (628)
T TIGR02316       280 ASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWL-----------  348 (628)
T ss_pred             cCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCccc-----------
Confidence            999999998754 66779999999874       36789999999999999999999987754211000           


Q ss_pred             HHHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCC
Q 006530          324 RALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSL  403 (641)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l  403 (641)
                                                                                    ...+++++|.+++||+++
T Consensus       349 --------------------------------------------------------------~~~~l~~lr~~~~gGe~l  366 (628)
T TIGR02316       349 --------------------------------------------------------------RKHDLSSLHWLFLAGEPL  366 (628)
T ss_pred             --------------------------------------------------------------ccCCccceeEEEEecCCC
Confidence                                                                          012455679999999999


Q ss_pred             ChhHHHHH-HHcCCeeeeccccccccCeeeecCCC----CCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecC-
Q 006530          404 PMHIDLFY-EAIGVKVQVGYGLTESSPVIAARRPT----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS-  477 (641)
Q Consensus       404 ~~~l~~~~-~~~~~~v~~~yG~tE~~~~~~~~~~~----~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~-  477 (641)
                      ++.+.+++ +.++..+++.||+||++..+......    ....+++|.|++|++++|+|++++++++.|+.|||+++|| 
T Consensus       367 ~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~~Gel~v~gp~  446 (628)
T TIGR02316       367 DEPTAHWITDGLGKPVIDNYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTVVPPL  446 (628)
T ss_pred             CHHHHHHHHHHhCCCEEecccccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCCCCCCCcEEEEEecCC
Confidence            99885554 55699999999999998544332221    2345789999999999999976899999999999999998 


Q ss_pred             --cccccccCCchhhhhcc---CCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHh
Q 006530          478 --QVMQGYFKNPSATKQAL---DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAAL  552 (641)
Q Consensus       478 --~~~~gY~~~~~~~~~~~---~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~  552 (641)
                        .++.||+++++.+.+.+   ..++||+|||+|++|+          ||+++|+||+||+|++ +|++|+|.|||++|.
T Consensus       447 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~----------dG~l~i~GR~dd~ik~-~G~rv~~~eIE~~l~  515 (628)
T TIGR02316       447 PPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWGIRDE----------DGYTFILGRTDDVINV-AGHRLGTREIEESVS  515 (628)
T ss_pred             CccccccccCChHHHHHhhhhcCCCCEEECCceEEEcC----------CCcEEEEEcCcceEEe-CCEEeCHHHHHHHHH
Confidence              56799999998877664   2478999999999999          9999999999999997 999999999999999


Q ss_pred             cCcccceEEEEecCCC----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEe
Q 006530          553 RSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVV  628 (641)
Q Consensus       553 ~~p~V~~~~v~g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~  628 (641)
                      +||+|.||+|++.+++    .+.++|+++++..        ...........++|+++++++|+.|+     .|++|+++
T Consensus       516 ~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~--------~~~~~~~~~~~~~i~~~~~~~L~~~~-----~P~~v~~v  582 (628)
T TIGR02316       516 SHPSVAEVAVVGVHDELKGQVAVVFAILKESDS--------AGDAHDPHAVETGMMDCVVRQLGAVA-----RPARVYFV  582 (628)
T ss_pred             hCCCcceEEEEeeecCCCCeEEEEEEEEcCCcc--------cccccchHHHHHHHHHHHHHhcCCCc-----CCCEEEEc
Confidence            9999999999998664    4667887764310        00000011235678888888888888     78899999


Q ss_pred             cCCCCCCCCcc
Q 006530          629 DEPFTVNFLCL  639 (641)
Q Consensus       629 ~~~~~~~~~~l  639 (641)
                      ++.|.+.|||+
T Consensus       583 ~~lP~t~sGKi  593 (628)
T TIGR02316       583 AALPKTRSGKL  593 (628)
T ss_pred             CCCCCCCchHH
Confidence            99999999997

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=1.1e-61  Score=549.76  Aligned_cols=504  Identities=16%  Similarity=0.192  Sum_probs=395.4

Q ss_pred             hhhhhhh----HHHHHhhhhhhhhhhhhhccc---CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHH
Q 006530           17 LDYHRHG----FRVFTRNCVDAVATRIRISRR---NHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWL   89 (641)
Q Consensus        17 ~~~~~~~----~~~~~~~~~~~~~~~~a~~~~---~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i   89 (641)
                      .+||...    ..+.+++++...|+++|++..   .++.+++||+||.++++++|+.|.+.|+++||+|+++++|+++++
T Consensus        48 ~~wf~~~~~n~~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~  127 (625)
T TIGR02188        48 YKWFVGGELNVSYNCVDRHLEARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAA  127 (625)
T ss_pred             CeeCCCCEEEHHHHHHHHhhccCCCCeEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH
Confidence            4555543    333444455667899998753   345689999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCceEEEecChh--------hHHHHHHhhcccc-cccEEEEEeCCCCCC
Q 006530           90 VADQGMLATGAINVVRGSRSSSEELLHIYNHSESVALAVENPE--------FFNRIAETLCSKA-AMRFIILLWGKKSSV  160 (641)
Q Consensus        90 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~--------~~~~~~~~~~~~~-~~~~~v~~~~~~~~~  160 (641)
                      ++++||+++|++++|+++.++.+++.+++++++++++|+++..        ....+.+.....+ .++.++.........
T Consensus       128 ~~~lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (625)
T TIGR02188       128 IAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPV  207 (625)
T ss_pred             HHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCCc
Confidence            9999999999999999999999999999999999999998632        2233444444444 455555553322110


Q ss_pred             CCCccCCCCcccHHHHHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHH-HHhh
Q 006530          161 APDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR-SLYD  239 (641)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~-~~~~  239 (641)
                      .   ........|++++......             ..+....++++++|+|||||||.||||+++|++++.... ....
T Consensus       208 ~---~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~  271 (625)
T TIGR02188       208 P---WVEGRDVWWHDLMAKASAY-------------CEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKY  271 (625)
T ss_pred             C---ccccccccHHHHHhhcCCC-------------CCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHh
Confidence            0   0011123456655432110             122345788999999999999999999999999865443 3445


Q ss_pred             hcCCCCCCEEEEECChhhHHHHHH-hHhhhhcCeeEEec-------chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHH
Q 006530          240 IVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQ  311 (641)
Q Consensus       240 ~~~~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~-------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  311 (641)
                      .+++.++|++++..|++|+.+... .+.++..|+++++.       ++..+++.++++++|++..+|+++..+.+.....
T Consensus       272 ~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~  351 (625)
T TIGR02188       272 VFDIKDGDIFWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEW  351 (625)
T ss_pred             ccCCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcc
Confidence            568889999999999999988754 66779999999874       4788999999999999999999998886532110


Q ss_pred             HhhccHHHHHHHHHHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcC
Q 006530          312 IFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG  391 (641)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  391 (641)
                      .                                                                         -..+++
T Consensus       352 ~-------------------------------------------------------------------------~~~~l~  358 (625)
T TIGR02188       352 V-------------------------------------------------------------------------KKHDLS  358 (625)
T ss_pred             c-------------------------------------------------------------------------ccCCcc
Confidence            0                                                                         002345


Q ss_pred             CceeEEeecCCCChhHHH-HHHHcC---CeeeeccccccccCeeeecCCC--CCcccccccCcCCcEEEEeeCCCCccCC
Q 006530          392 ISKAGVSGGGSLPMHIDL-FYEAIG---VKVQVGYGLTESSPVIAARRPT--CNVLGSVGHPINHTEIKIVDAETNEVLP  465 (641)
Q Consensus       392 ~~r~i~~gG~~l~~~l~~-~~~~~~---~~v~~~yG~tE~~~~~~~~~~~--~~~~~~~G~~~~~~~v~i~d~~~~~~~~  465 (641)
                      ++|.+++||+++++++.+ +.+.++   +++++.||+||+++.+......  ...++++|.|++|++++|+| +++++++
T Consensus       359 ~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~  437 (625)
T TIGR02188       359 SLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVE  437 (625)
T ss_pred             ceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccCCceeecCCCCCCcCCCcccCCcCCceEEEEC-CCCCCCC
Confidence            669999999999998854 444554   7899999999998776544332  34578899999999999999 6788888


Q ss_pred             -CCCCceEEEec--CcccccccCCchhhhhccC--CCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCce
Q 006530          466 -AGSKGIVKVRG--SQVMQGYFKNPSATKQALD--EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGE  540 (641)
Q Consensus       466 -~g~~Gel~v~g--~~~~~gY~~~~~~~~~~~~--~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~  540 (641)
                       .|+.|||+++|  |+++.||+++++.+.+.+.  .+|||+|||+|++++          ||.++++||+||+|++ +|+
T Consensus       438 ~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~----------dG~l~i~GR~dd~i~~-~G~  506 (625)
T TIGR02188       438 GPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGDGARRDK----------DGYIWITGRVDDVINV-SGH  506 (625)
T ss_pred             CCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCCEEECCceEEEcC----------CCcEEEEecccCEEEe-CCE
Confidence             99999999999  6899999999988877763  378999999999999          9999999999999997 999


Q ss_pred             eeccHHhHHHHhcCcccceEEEEecCCC----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhc
Q 006530          541 NVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTS  616 (641)
Q Consensus       541 ~v~p~~iE~~l~~~p~V~~~~v~g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~  616 (641)
                      +|+|.|||++|.+||+|.||+|++.+++    .+.++|+++++.             .......++++++++++|+.++ 
T Consensus       507 ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~-------------~~~~~~~~~l~~~~~~~l~~~~-  572 (625)
T TIGR02188       507 RLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGY-------------EPDDELRKELRKHVRKEIGPIA-  572 (625)
T ss_pred             EECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCC-------------CCCHHHHHHHHHHHHhhcCCCc-
Confidence            9999999999999999999999998654    567888887541             0011134678888888888887 


Q ss_pred             cCCCccccEEEecCCCCCCCCcc
Q 006530          617 KCSFQIGPIHVVDEPFTVNFLCL  639 (641)
Q Consensus       617 ~~~~~~~~i~~~~~~~~~~~~~l  639 (641)
                          .|+.|+++++.|.+.|||+
T Consensus       573 ----~P~~i~~v~~lP~t~sGKi  591 (625)
T TIGR02188       573 ----KPDKIRFVPGLPKTRSGKI  591 (625)
T ss_pred             ----cCcEEEECCCCCCCCCccc
Confidence                8889999999999999997

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=4.1e-61  Score=534.91  Aligned_cols=487  Identities=21%  Similarity=0.293  Sum_probs=375.0

Q ss_pred             HHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEEe
Q 006530           25 RVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVV  104 (641)
Q Consensus        25 ~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v~  104 (641)
                      .+...+.+.++|+++++.+.+.  +++||+||.++++++|+.|.+.   +||+|+++++|++++++++|||+++|++++|
T Consensus        22 ~~~~~~~~~~~p~~~a~~~~~~--~~~Ty~el~~~~~~lA~~L~~~---~gd~Val~~~n~~e~~~~~lA~~~~G~v~vp   96 (539)
T PRK06334         22 LESFLKLCSEMTTATVCWDEQL--GKLSYNQVRKAVIALATKVSKY---PDQHIGIMMPASAGAYIAYFATLLSGKIPVM   96 (539)
T ss_pred             HHHHHHHHHhCCCceEEEeCCC--CcccHHHHHHHHHHHHHHHhhc---cCCeEEEEcCCchHHHHHHHHHHhcCCeeEe
Confidence            3344455666788888765542  3499999999999999999873   8999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhccccc-ccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhh
Q 006530          105 RGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAA-MRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRES  183 (641)
Q Consensus       105 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (641)
                      +++.++.+++.++++.+++++++++. +....+.+....... ...++...+.. .          ...+.+........
T Consensus        97 l~~~~~~~~l~~~l~~~~~~~ii~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~-~----------~~~~~~~~~~~~~~  164 (539)
T PRK06334         97 INWSQGLREVTACANLVGVTHVLTSK-QLMQHLAQTHGEDAEYPFSLIYMEEVR-K----------ELSFWEKCRIGIYM  164 (539)
T ss_pred             cCcccchHHHHHHHHHcCCCEEEehH-HHHHHHhhhhhccccccccEEEEehhh-h----------hccHHHhhhhhhhh
Confidence            99999999999999999999999984 454444433221111 11222222100 0          01111111110000


Q ss_pred             hcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHHH
Q 006530          184 RKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC  263 (641)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~  263 (641)
                      .....   ............++++++++|||||||.||||.+||+++..........+++.++|++++++|++|.+++..
T Consensus       165 ~~~~~---~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~  241 (539)
T PRK06334        165 SIPFE---WLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGFNS  241 (539)
T ss_pred             cCCch---hhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecchHhhhhhHH
Confidence            00000   000000123456799999999999999999999999999988887777888899999999999999999865


Q ss_pred             -hHhhhhcCeeEEec----chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHh
Q 006530          264 -GYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKR  338 (641)
Q Consensus       264 -~~~~l~~G~~~v~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (641)
                       .+.++..|+++++.    ++..+++.++++++|++.++|+++..+.+.....                           
T Consensus       242 ~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---------------------------  294 (539)
T PRK06334        242 CTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQ---------------------------  294 (539)
T ss_pred             HHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhc---------------------------
Confidence             56778999998874    5788999999999999999999999887643211                           


Q ss_pred             HhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHc-CC
Q 006530          339 IYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GV  416 (641)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~-~~  416 (641)
                                                                      ...++++|.+++||++++..+ +.+.+.+ +.
T Consensus       295 ------------------------------------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~  326 (539)
T PRK06334        295 ------------------------------------------------ESCLPSLRFVVIGGDAFKDSLYQEALKTFPHI  326 (539)
T ss_pred             ------------------------------------------------ccccccccEEEECCccCCHHHHHHHHHHCCCC
Confidence                                                            023455699999999999988 4555566 68


Q ss_pred             eeeeccccccccCeeeecCCCC-CcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhc-c
Q 006530          417 KVQVGYGLTESSPVIAARRPTC-NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQA-L  494 (641)
Q Consensus       417 ~v~~~yG~tE~~~~~~~~~~~~-~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~-~  494 (641)
                      .+++.||+||++.++....... ...+++|+|+++++++|+|++++.++++|+.|||+|+|+.++.||+++++.+... +
T Consensus       327 ~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~  406 (539)
T PRK06334        327 QLRQGYGTTECSPVITINTVNSPKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVEL  406 (539)
T ss_pred             eEEecccccccCceEEeccCCCCCCCCcCceecCCCEEEEEcCCCCccCCCCceEEEEEecCcccccccCCcccccceee
Confidence            9999999999987766554332 3456799999999999999777899999999999999999999999998865432 2


Q ss_pred             CCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccce------EEEEecCCC
Q 006530          495 DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ------IVVIGQDQR  568 (641)
Q Consensus       495 ~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~------~~v~g~~~~  568 (641)
                      +.+|||+|||+|++++          +|.+++.||.+|+|++ +|++|+|.|||++|.+||+|.+      ++|++.+++
T Consensus       407 ~~~~w~~TGD~g~~d~----------~G~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~  475 (539)
T PRK06334        407 GGETWYVTGDLGYVDR----------HGELFLKGRLSRFVKI-GAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGE  475 (539)
T ss_pred             CCceeEECCCEEEECC----------CCeEEEEeccCCeEEE-CCEEECHHHHHHHHHHccCCccccccCceEEEcCCCC
Confidence            3478999999999999          9999999999999997 9999999999999999999998      888998877


Q ss_pred             ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHH-HHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          569 RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       569 ~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                      ...+++++..                  ..+.++++++++++ ++.|+     +|+.|.++++.|.+.+||+-
T Consensus       476 ~~~~~~~~~~------------------~~~~~~~~~~l~~~~~~~~~-----~P~~i~~v~~lP~t~~GKi~  525 (539)
T PRK06334        476 KVRLCLFTTF------------------PTSISEVNDILKNSKTSSIL-----KISYHHQVESIPMLGTGKPD  525 (539)
T ss_pred             ceEEEEEEec------------------cCChHHHHHHHHhcCCcccc-----cchheeeecccccccCCccc
Confidence            5443333221                  12456788888875 66777     77789999999999999973

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=4e-61  Score=546.23  Aligned_cols=496  Identities=16%  Similarity=0.187  Sum_probs=392.3

Q ss_pred             HHHHhhhhhhhhhhhhhcccC---CceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCE
Q 006530           25 RVFTRNCVDAVATRIRISRRN---HRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAI  101 (641)
Q Consensus        25 ~~~~~~~~~~~~~~~a~~~~~---~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~  101 (641)
                      .+.+++++.+.|+++|+++.+   +..+++||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus        70 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav  149 (637)
T PRK00174         70 YNCLDRHLKTRGDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAV  149 (637)
T ss_pred             HHHHHHhhccCCCCeEEEEECCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCE
Confidence            345556667789999988643   35688999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHHhcCceEEEecChh--------hHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccH
Q 006530          102 NVVRGSRSSSEELLHIYNHSESVALAVENPE--------FFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSY  173 (641)
Q Consensus       102 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~--------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  173 (641)
                      ++|+++.++.+++.+++++++++++|+++..        ..+.+.+.....+.++.++..........   ........|
T Consensus       150 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  226 (637)
T PRK00174        150 HSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDVD---WVEGRDLWW  226 (637)
T ss_pred             EEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCCCcC---cCCCCcccH
Confidence            9999999999999999999999999997632        22334444444455666665543221100   001123446


Q ss_pred             HHHHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHH-HHhhhcCCCCCCEEEEE
Q 006530          174 DEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR-SLYDIVPAENGDKFLSM  252 (641)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~-~~~~~~~~~~~d~~l~~  252 (641)
                      +++.......             .......++++++|+|||||||.||||+++|++++.... .....+++.++|++++.
T Consensus       227 ~~~~~~~~~~-------------~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~  293 (637)
T PRK00174        227 HELVAGASDE-------------CEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCT  293 (637)
T ss_pred             HHHHhhcCCC-------------CCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEc
Confidence            6655422110             122345678999999999999999999999999875443 33445688889999999


Q ss_pred             CChhhHHHHHH-hHhhhhcCeeEEec-------chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHH
Q 006530          253 LPPWHVYERAC-GYFIFSRGIELMYT-------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVAR  324 (641)
Q Consensus       253 ~pl~~~~g~~~-~~~~l~~G~~~v~~-------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~  324 (641)
                      +|++|+.+... .+.++..|+++++.       ++..+++.++++++|++..+|+++..+.+......            
T Consensus       294 ~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~------------  361 (637)
T PRK00174        294 ADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHP------------  361 (637)
T ss_pred             CCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCccc------------
Confidence            99999988754 66779999999874       47789999999999999999999988865321100            


Q ss_pred             HHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCC
Q 006530          325 ALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLP  404 (641)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~  404 (641)
                                                                                   ...+++++|.+++||++++
T Consensus       362 -------------------------------------------------------------~~~~~~~lr~i~~~Ge~l~  380 (637)
T PRK00174        362 -------------------------------------------------------------KKYDLSSLRLLGSVGEPIN  380 (637)
T ss_pred             -------------------------------------------------------------ccCCccceeEEEEeCCCCC
Confidence                                                                         0023455699999999999


Q ss_pred             hhHHHHH-HHcC---CeeeeccccccccCeeeecCCC--CCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEec--
Q 006530          405 MHIDLFY-EAIG---VKVQVGYGLTESSPVIAARRPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG--  476 (641)
Q Consensus       405 ~~l~~~~-~~~~---~~v~~~yG~tE~~~~~~~~~~~--~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g--  476 (641)
                      +++.+++ +.++   +++++.||+||++.........  ...++++|.|++|++++|+| +++++++.|+.|||+++|  
T Consensus       381 ~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d-~~g~~~~~g~~Gel~v~g~~  459 (637)
T PRK00174        381 PEAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLPGATPLKPGSATRPLPGIQPAVVD-EEGNPLEGGEGGNLVIKDPW  459 (637)
T ss_pred             HHHHHHHHHHhCCCCCceEecccccccCCceEecCCCCCCcCCCcccCCCCCceEEEEC-CCCCCCCCCCcEEEEEcCCC
Confidence            9885544 4454   7899999999998766544332  23467899999999999999 568899999999999999  


Q ss_pred             CcccccccCCchhhhhccC--CCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcC
Q 006530          477 SQVMQGYFKNPSATKQALD--EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRS  554 (641)
Q Consensus       477 ~~~~~gY~~~~~~~~~~~~--~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~  554 (641)
                      |+++.||+++++.+.+.+.  .+|||+|||+|++++          ||+++|+||+||+|++ +|++|+|.|||++|.+|
T Consensus       460 p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~----------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~  528 (637)
T PRK00174        460 PGMMRTIYGDHERFVKTYFSTFKGMYFTGDGARRDE----------DGYYWITGRVDDVLNV-SGHRLGTAEIESALVAH  528 (637)
T ss_pred             CcccccccCCHHHHHHhhhcCCCCEEECCceEEEcC----------CCcEEEEEecccEEEe-CCEEECHHHHHHHHHhC
Confidence            6899999999998877762  378999999999999          9999999999999997 99999999999999999


Q ss_pred             cccceEEEEecCCC----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecC
Q 006530          555 SLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDE  630 (641)
Q Consensus       555 p~V~~~~v~g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~  630 (641)
                      |+|.+|+|++.+++    .+.++|++.++.             .......++|+++++++|+.|+     .|+.|+++++
T Consensus       529 ~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~-------------~~~~~~~~~l~~~l~~~l~~~~-----~P~~i~~v~~  590 (637)
T PRK00174        529 PKVAEAAVVGRPDDIKGQGIYAFVTLKGGE-------------EPSDELRKELRNWVRKEIGPIA-----KPDVIQFAPG  590 (637)
T ss_pred             CCcceEEEEeeEcCCCCeEEEEEEEECCCC-------------CCCHHHHHHHHHHHHhhcCCcc-----CCCEEEEcCC
Confidence            99999999997654    577888876531             0011124678888888888888     7788999999


Q ss_pred             CCCCCCCcc
Q 006530          631 PFTVNFLCL  639 (641)
Q Consensus       631 ~~~~~~~~l  639 (641)
                      .|.+.|||+
T Consensus       591 lP~t~~GKi  599 (637)
T PRK00174        591 LPKTRSGKI  599 (637)
T ss_pred             CCCCCCcch
Confidence            999999997

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=1.4e-60  Score=534.24  Aligned_cols=502  Identities=23%  Similarity=0.240  Sum_probs=383.7

Q ss_pred             hHHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q 006530           23 GFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN  102 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~  102 (641)
                      .+..+.++++.++|+++++.+++   +++||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus         8 ~~~~~~~~~~~~~p~~~a~~~~~---~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~Gav~   84 (563)
T PLN02860          8 HICQCLTRLATLRGNAVVTISGN---RRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGGIV   84 (563)
T ss_pred             HHHHHHHHHHHhcCCceEEecCC---ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhccEEE
Confidence            45556677778889999887755   459999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHh-hcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhh
Q 006530          103 VVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAET-LCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGR  181 (641)
Q Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (641)
                      +|+++.++.+++.+++++++++++++++. ........ ....+.++..+...+....         ....+.+++....
T Consensus        85 vpl~~~~~~~~l~~~l~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~  154 (563)
T PLN02860         85 APLNYRWSFEEAKSAMLLVRPVMLVTDET-CSSWYEELQNDRLPSLMWQVFLESPSSS---------VFIFLNSFLTTEM  154 (563)
T ss_pred             EeCCcccCHHHHHHHHHhcCceEEEEecc-cchHHHHHhhccCCceeEEEEecCcccc---------cccchhhccccch
Confidence            99999999999999999999999999863 21111111 1222333433333221100         0011112111110


Q ss_pred             hhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHH
Q 006530          182 ESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYER  261 (641)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~  261 (641)
                      ...... .  .   ........++++++++|||||||.||||.++|+++..........+++.++|+++..+|++|++++
T Consensus       155 ~~~~~~-~--~---~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~  228 (563)
T PLN02860        155 LKQRAL-G--T---TELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGL  228 (563)
T ss_pred             hccCcc-c--c---ccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccH
Confidence            000000 0  0   001123467899999999999999999999999998877777777889999999999999999998


Q ss_pred             HHhHhhhhcCeeEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHh
Q 006530          262 ACGYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKR  338 (641)
Q Consensus       262 ~~~~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (641)
                      ...+.++..|+++++.   ++..+++.++++++|++.++|+++..+.+......                          
T Consensus       229 ~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--------------------------  282 (563)
T PLN02860        229 SSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSM--------------------------  282 (563)
T ss_pred             HHHHHHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhh--------------------------
Confidence            8888889999999884   57889999999999999999999998876432110                          


Q ss_pred             HhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHc-CC
Q 006530          339 IYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GV  416 (641)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~-~~  416 (641)
                                                                     ....++++|.+++||+++++.+ +.+.+.+ +.
T Consensus       283 -----------------------------------------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~  315 (563)
T PLN02860        283 -----------------------------------------------TWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNA  315 (563)
T ss_pred             -----------------------------------------------ccccccceeEEEeCCCcCCHHHHHHHHHhcCCC
Confidence                                                           0123455699999999999988 5555666 78


Q ss_pred             eeeeccccccccCeeeecCCCC-----------------------CcccccccCcCCcEEEEeeCCCCccCCCCCCceEE
Q 006530          417 KVQVGYGLTESSPVIAARRPTC-----------------------NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVK  473 (641)
Q Consensus       417 ~v~~~yG~tE~~~~~~~~~~~~-----------------------~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~  473 (641)
                      ++++.||+||++..+.......                       ....++|+|+++++++|++++      +|+.|||+
T Consensus       316 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~------~g~~Gel~  389 (563)
T PLN02860        316 KLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDE------SSRVGRIL  389 (563)
T ss_pred             ceecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecCC------CCceeEEE
Confidence            9999999999876544321110                       112368999999999999854      57889999


Q ss_pred             EecCcccccccCCchhhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhc
Q 006530          474 VRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR  553 (641)
Q Consensus       474 v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~  553 (641)
                      ++|+.++.||+++++.+.+.|..+|||+|||+|++++          ||+++|+||++|+|+. +|++|+|.+||+++.+
T Consensus       390 v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDl~~~d~----------dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~  458 (563)
T PLN02860        390 TRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDK----------AGNLWLIGRSNDRIKT-GGENVYPEEVEAVLSQ  458 (563)
T ss_pred             EecCcccccccCCccccchhccCCCeEEccceEEEcC----------CCCEEEeecccceeEE-CCEEccHHHHHHHHHh
Confidence            9999999999999999999998899999999999999          9999999999999997 9999999999999999


Q ss_pred             CcccceEEEEecCCC----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHH-HHHhHhccCCCccccEEEe
Q 006530          554 SSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVV  628 (641)
Q Consensus       554 ~p~V~~~~v~g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~i~~~  628 (641)
                      ||+|.+++|++.+++    .+.++|+++++..  +..............+.+++.+++++ .|++|+     .|+.|+++
T Consensus       459 ~p~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~-----~P~~~~~~  531 (563)
T PLN02860        459 HPGVASVVVVGVPDSRLTEMVVACVRLRDGWI--WSDNEKENAKKNLTLSSETLRHHCREKNLSRFK-----IPKLFVQW  531 (563)
T ss_pred             CCCcceeEEEEEecCcCCceEEEEEEECCccc--cccccchhhcccccccHHHHHHHHhhCcccccc-----cceEEEEE
Confidence            999999999998764    5678888775410  00000000001123456788899987 498888     77778765


Q ss_pred             -cCCCCCCCCccc
Q 006530          629 -DEPFTVNFLCLA  640 (641)
Q Consensus       629 -~~~~~~~~~~l~  640 (641)
                       ++.|.+.+||+.
T Consensus       532 ~~~lP~t~~GKi~  544 (563)
T PLN02860        532 RKPFPLTTTGKIR  544 (563)
T ss_pred             ecCCCCCcccchh
Confidence             668999999973

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=8.9e-60  Score=526.17  Aligned_cols=495  Identities=22%  Similarity=0.293  Sum_probs=397.6

Q ss_pred             hhhhhHHHHHhhhhhhhhhhhhhcccC---CceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHH
Q 006530           19 YHRHGFRVFTRNCVDAVATRIRISRRN---HRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGM   95 (641)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~   95 (641)
                      |....+..++++.++.+|+++|+++.+   +.++++||+||.++++++|.+|.+.|+++||+|+++++|+++++++++||
T Consensus        21 ~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~  100 (547)
T PRK13295         21 WHDRTINDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLAC  100 (547)
T ss_pred             CcCCCHHHHHHHHHHHCCCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHH
Confidence            333456667777778889999887643   45688999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEecCCCCCHHHHHHHHHhcCceEEEecChh----hHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcc
Q 006530           96 LATGAINVVRGSRSSSEELLHIYNHSESVALAVENPE----FFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVF  171 (641)
Q Consensus        96 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  171 (641)
                      +++|++++|+++.++.+++.++++.++++.+++++..    ..+.+.+.....+.++.++.+....            ..
T Consensus       101 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~  168 (547)
T PRK13295        101 SRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDG------------AD  168 (547)
T ss_pred             HhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCCC------------cc
Confidence            9999999999999999999999999999999998631    1223333333445555555543221            13


Q ss_pred             cHHHHHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEE
Q 006530          172 SYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLS  251 (641)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~  251 (641)
                      ++.+++..........    .. .........++++++++|||||||.||+|.+||++++..+......+++.+++++++
T Consensus       169 ~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~  243 (547)
T PRK13295        169 SFEALLITPAWEQEPD----AP-AILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILM  243 (547)
T ss_pred             CHHHHhhCCccccccc----cc-cccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEE
Confidence            4555443211100000    00 001123356789999999999999999999999999998888888889999999999


Q ss_pred             ECChhhHHHHHH-hHhhhhcCeeEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q 006530          252 MLPPWHVYERAC-GYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALI  327 (641)
Q Consensus       252 ~~pl~~~~g~~~-~~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  327 (641)
                      .+|++|..++.. .+.++..|+++++.   ++..+.+.++++++|++.++|.++..+.......                
T Consensus       244 ~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~----------------  307 (547)
T PRK13295        244 ASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKES----------------  307 (547)
T ss_pred             ecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccc----------------
Confidence            999999998765 66679999999885   5788999999999999999999998876532111                


Q ss_pred             HHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH
Q 006530          328 RISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI  407 (641)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l  407 (641)
                                                                                 ...++++|.+++||+++++.+
T Consensus       308 -----------------------------------------------------------~~~~~~l~~~~~~G~~l~~~~  328 (547)
T PRK13295        308 -----------------------------------------------------------GRPVSSLRTFLCAGAPIPGAL  328 (547)
T ss_pred             -----------------------------------------------------------CCCcccceEEEEecCCCCHHH
Confidence                                                                       023445699999999999998


Q ss_pred             -HHHHHHcCCeeeeccccccccCeeeecCCC--CCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCccccccc
Q 006530          408 -DLFYEAIGVKVQVGYGLTESSPVIAARRPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYF  484 (641)
Q Consensus       408 -~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~--~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~  484 (641)
                       +.+.+.++.++++.||+||++.+...+...  .....++|+|+++++++|+|+ ++++++.|+.|||+++|+.++.||+
T Consensus       329 ~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~-~~~~~~~g~~Gel~v~g~~~~~gY~  407 (547)
T PRK13295        329 VERARAALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVDA-DGAPLPAGQIGRLQVRGCSNFGGYL  407 (547)
T ss_pred             HHHHHHHhCCCeEEeccCCCCCCeeeccCCCcchhccCccccccCCcEEEEECC-CCCCCCCCCCCeEEEEcCccccccc
Confidence             445566799999999999998766544322  223467899999999999994 5788999999999999999999999


Q ss_pred             CCchhhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEe
Q 006530          485 KNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG  564 (641)
Q Consensus       485 ~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g  564 (641)
                      ++++.+...  .+|||+|||+|++++          +|.+++.||.+|+|++ +|++|+|.+||+.|.++|+|.+++|++
T Consensus       408 ~~~~~t~~~--~~g~~~TGD~~~~~~----------~g~l~~~gR~~~~i~~-~G~~v~p~~IE~~l~~~~~v~~~~v~~  474 (547)
T PRK13295        408 KRPQLNGTD--ADGWFDTGDLARIDA----------DGYIRISGRSKDVIIR-GGENIPVVEIEALLYRHPAIAQVAIVA  474 (547)
T ss_pred             CCccccccC--CCCCeecceEEEEcC----------CceEEEEeccCCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEe
Confidence            999888765  478999999999999          8999999999999997 999999999999999999999999999


Q ss_pred             cCCC----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHH-HHHhHhccCCCccccEEEecCCCCCCCCcc
Q 006530          565 QDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  639 (641)
Q Consensus       565 ~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l  639 (641)
                      .+++    .+.++|+++++                ...+.+++++++++ .++.|+     +|++|+++++.|.+.+||+
T Consensus       475 ~~~~~~g~~~~~~v~~~~~----------------~~~~~~~l~~~~~~~~l~~~~-----~P~~i~~v~~lP~t~sgK~  533 (547)
T PRK13295        475 YPDERLGERACAFVVPRPG----------------QSLDFEEMVEFLKAQKVAKQY-----IPERLVVRDALPRTPSGKI  533 (547)
T ss_pred             eecCCCCcEEEEEEEeCCC----------------CCCCHHHHHHHHHhccCcccc-----CCcEEEEeccCCCCCCccc
Confidence            7654    56678887643                23456788888886 588887     7788999999999999997


Q ss_pred             c
Q 006530          640 A  640 (641)
Q Consensus       640 ~  640 (641)
                      .
T Consensus       534 ~  534 (547)
T PRK13295        534 Q  534 (547)
T ss_pred             c
Confidence            3

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=6.3e-60  Score=528.53  Aligned_cols=476  Identities=24%  Similarity=0.320  Sum_probs=380.9

Q ss_pred             hhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEEecCCCCCH
Q 006530           33 DAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRV-IGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSS  111 (641)
Q Consensus        33 ~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v~l~~~~~~  111 (641)
                      ...|+++++++..+. .++||+||.++++++|++|.+ .|+++||+|+++++|++++++++|||+++|++++|++|.++.
T Consensus        50 ~~~~~~~a~~~~~~~-~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~p~~~~  128 (560)
T PLN02574         50 HNHNGDTALIDSSTG-FSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSL  128 (560)
T ss_pred             cccCCCCEEEECCCC-CcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHhCeEEeCcCcccCH
Confidence            467888888765432 359999999999999999998 999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhhhcccCCCc
Q 006530          112 EELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSN  191 (641)
Q Consensus       112 ~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (641)
                      +++.++++.++++.++++. +....+...     ... ++.+.+.... ...   ......|++++......        
T Consensus       129 ~~l~~~l~~~~~~~~~~~~-~~~~~~~~~-----~~~-~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~--------  189 (560)
T PLN02574        129 GEIKKRVVDCSVGLAFTSP-ENVEKLSPL-----GVP-VIGVPENYDF-DSK---RIEFPKFYELIKEDFDF--------  189 (560)
T ss_pred             HHHHHHHHhcCCEEEEECH-HHHHHHHhc-----CCc-EEecCccccc-ccC---ccCcccHHHHhhcCCcc--------
Confidence            9999999999999999985 443433221     111 1211111000 000   01123455554432111        


Q ss_pred             hhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhh----cCC-CCCCEEEEECChhhHHHHHHh-H
Q 006530          192 DARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI----VPA-ENGDKFLSMLPPWHVYERACG-Y  265 (641)
Q Consensus       192 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~----~~~-~~~d~~l~~~pl~~~~g~~~~-~  265 (641)
                           .......++++++++|||||||.||||.+||+++.+.+..+...    ... ...++++..+|++|.+++... +
T Consensus       190 -----~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~  264 (560)
T PLN02574        190 -----VPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVV  264 (560)
T ss_pred             -----cccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHH
Confidence                 11223467899999999999999999999999998877665431    222 356888999999999998764 4


Q ss_pred             hhhhcCeeEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhHhcc
Q 006530          266 FIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEG  342 (641)
Q Consensus       266 ~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (641)
                      .++..|+++++.   ++..++..++++++|++.++|+++..+.+......                              
T Consensus       265 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------------  314 (560)
T PLN02574        265 GLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVC------------------------------  314 (560)
T ss_pred             HHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccc------------------------------
Confidence            557889998875   57889999999999999999999998866321100                              


Q ss_pred             cccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHc-CCeeee
Q 006530          343 FCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQV  420 (641)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~-~~~v~~  420 (641)
                                                                  ...+.++|.+++||++++..+ +++.+.+ +..+++
T Consensus       315 --------------------------------------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~  350 (560)
T PLN02574        315 --------------------------------------------GEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQ  350 (560)
T ss_pred             --------------------------------------------cCccccceEEEEecccCCHHHHHHHHHHCCCCcEEe
Confidence                                                        023445699999999999887 5666667 789999


Q ss_pred             ccccccccCeeeecCC--CCCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccCCCC
Q 006530          421 GYGLTESSPVIAARRP--TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG  498 (641)
Q Consensus       421 ~yG~tE~~~~~~~~~~--~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g  498 (641)
                      .||+||++.+......  ....++++|.|.++++++|+|++++.+++.|+.|||||+|+.++.||+++++.+.+.|+.+|
T Consensus       351 ~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g  430 (560)
T PLN02574        351 GYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDG  430 (560)
T ss_pred             cccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCCCeEEEEECcchhhhhcCChhHhhhhccCCC
Confidence            9999999865543222  22456789999999999999988899999999999999999999999999999999998899


Q ss_pred             ccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC----ceEEEE
Q 006530          499 WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAII  574 (641)
Q Consensus       499 ~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----~~~a~v  574 (641)
                      ||+|||+|++++          +|.+++.||++|+|++ +|++|+|.|||+.|.+||+|.|++|++.+++    .+.++|
T Consensus       431 ~~~TGDlg~~~~----------~G~l~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v  499 (560)
T PLN02574        431 WLRTGDIAYFDE----------DGYLYIVDRLKEIIKY-KGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFV  499 (560)
T ss_pred             CcccceEEEEEC----------CCeEEEEecchhheEE-CCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEE
Confidence            999999999999          9999999999999998 9999999999999999999999999998764    355777


Q ss_pred             ecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCcc
Q 006530          575 VPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  639 (641)
Q Consensus       575 v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l  639 (641)
                      +++++                ...+.+++.++++++|++|+     ++++|.++++.|.+.+||+
T Consensus       500 ~~~~~----------------~~~~~~~l~~~~~~~l~~~~-----~p~~v~~v~~iP~t~~GKi  543 (560)
T PLN02574        500 VRRQG----------------STLSQEAVINYVAKQVAPYK-----KVRKVVFVQSIPKSPAGKI  543 (560)
T ss_pred             EeCCC----------------CCCCHHHHHHHHHHhccCcc-----cCcEEEEeeccCCCCcchh
Confidence            76543                34567899999999999998     7778999999999999997

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=9e-60  Score=526.95  Aligned_cols=481  Identities=19%  Similarity=0.269  Sum_probs=375.7

Q ss_pred             HHHhhhhhhhhhhhhhcccCC-------ceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhc
Q 006530           26 VFTRNCVDAVATRIRISRRNH-------RFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLAT   98 (641)
Q Consensus        26 ~~~~~~~~~~~~~~a~~~~~~-------~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~   98 (641)
                      .+++..+.+.|+++|++..++       .++++||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++
T Consensus        10 ~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~la~~~~   89 (552)
T PRK09274         10 RHLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFALFKA   89 (552)
T ss_pred             HHHHHHHHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHHHHHHHc
Confidence            445555667888888876543       2457999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEecCCCCCHHHHHHHHHhcCceEEEecChh-hHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHH
Q 006530           99 GAINVVRGSRSSSEELLHIYNHSESVALAVENPE-FFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEII  177 (641)
Q Consensus        99 G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (641)
                      |++++|++|.++.+++.+++++++++++|+++.. ....+....  ....+.++......         ......++++.
T Consensus        90 G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~---------~~~~~~~~~~~  158 (552)
T PRK09274         90 GAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWG--KPSVRRLVTVGGRL---------LWGGTTLATLL  158 (552)
T ss_pred             CeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccC--ccchhheecccccc---------ccCCccHHHhc
Confidence            9999999999999999999999999999997422 222221110  11222222221110         01123455543


Q ss_pred             HhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhh
Q 006530          178 DLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH  257 (641)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~  257 (641)
                      .......            .......++++++++|||||||.||+|.+||+++...+......+++.++++.++.+|++|
T Consensus       159 ~~~~~~~------------~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~  226 (552)
T PRK09274        159 RDGAAAP------------FPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFA  226 (552)
T ss_pred             ccCcccc------------CCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHH
Confidence            1111000            1123456789999999999999999999999999999888888889999999999999988


Q ss_pred             HHHHHHhHhhhhcCeeEEec----------chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q 006530          258 VYERACGYFIFSRGIELMYT----------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALI  327 (641)
Q Consensus       258 ~~g~~~~~~~l~~G~~~v~~----------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  327 (641)
                      .+++       ..|+++++.          ++..+++.++++++|+++++|+++..+.+......               
T Consensus       227 ~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~---------------  284 (552)
T PRK09274        227 LFGP-------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANG---------------  284 (552)
T ss_pred             hhhh-------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcC---------------
Confidence            7654       345555542          46789999999999999999999998876432211               


Q ss_pred             HHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH
Q 006530          328 RISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI  407 (641)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l  407 (641)
                                                                                  ..++++|.+++||++++..+
T Consensus       285 ------------------------------------------------------------~~~~~lr~~~~gG~~~~~~~  304 (552)
T PRK09274        285 ------------------------------------------------------------IKLPSLRRVISAGAPVPIAV  304 (552)
T ss_pred             ------------------------------------------------------------CCCchhhEEEecCCcCCHHH
Confidence                                                                        13445599999999999988


Q ss_pred             -HHHHHHc--CCeeeeccccccccCeeeecCCC----------CCcccccccCcCCcEEEEeeCC--------CCccCCC
Q 006530          408 -DLFYEAI--GVKVQVGYGLTESSPVIAARRPT----------CNVLGSVGHPINHTEIKIVDAE--------TNEVLPA  466 (641)
Q Consensus       408 -~~~~~~~--~~~v~~~yG~tE~~~~~~~~~~~----------~~~~~~~G~~~~~~~v~i~d~~--------~~~~~~~  466 (641)
                       +.+.+.+  |.++++.||+||++.++......          .....++|+|+++++++|+|++        ++++++.
T Consensus       305 ~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~  384 (552)
T PRK09274        305 IERFRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLAT  384 (552)
T ss_pred             HHHHHHHcCCCceEEccccccccceeEeecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCC
Confidence             5555666  46999999999998765543221          1122478999999999999853        4578899


Q ss_pred             CCCceEEEecCcccccccCCchhhhhcc--CCCC--ccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceee
Q 006530          467 GSKGIVKVRGSQVMQGYFKNPSATKQAL--DEDG--WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENV  542 (641)
Q Consensus       467 g~~Gel~v~g~~~~~gY~~~~~~~~~~~--~~~g--~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v  542 (641)
                      |+.|||+++|++++.||+++++.+...|  +.+|  ||+|||+|++++          ||.+++.||.+|+|++ +|++|
T Consensus       385 g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~----------dG~l~~~GR~~d~i~~-~G~~v  453 (552)
T PRK09274        385 GEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDA----------QGRLWFCGRKAHRVET-AGGTL  453 (552)
T ss_pred             CCeeEEEEecCcccccccCChHHhhhhhcccCCCCcEEEcCCEEEEcc----------CCcEEEEeccCCeEEE-CCEEE
Confidence            9999999999999999999999988776  3356  999999999999          9999999999999997 99999


Q ss_pred             ccHHhHHHHhcCcccceEEEEecCCC---ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCC
Q 006530          543 EPLELEEAALRSSLIRQIVVIGQDQR---RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCS  619 (641)
Q Consensus       543 ~p~~iE~~l~~~p~V~~~~v~g~~~~---~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~  619 (641)
                      +|.|||++|.+||+|.+|+|++.+++   .+.++|+++++                ...+.+++.+++++.+..+..+  
T Consensus       454 ~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~~v~~~~~----------------~~~~~~~l~~~l~~~l~~~~~~--  515 (552)
T PRK09274        454 YTIPCERIFNTHPGVKRSALVGVGVPGAQRPVLCVELEPG----------------VACSKSALYQELRALAAAHPHT--  515 (552)
T ss_pred             CcHHHHHHHHhCcccceeEEEEeCCCCCceEEEEEEccCc----------------cccchHHHhhhhHHHHHhcCCC--
Confidence            99999999999999999999997654   46677777653                2345567888999888888544  


Q ss_pred             CccccEEEecCCCCC--CCCccc
Q 006530          620 FQIGPIHVVDEPFTV--NFLCLA  640 (641)
Q Consensus       620 ~~~~~i~~~~~~~~~--~~~~l~  640 (641)
                      ..|++|.++++.|.+  .|||+.
T Consensus       516 ~~~~~~~~~~~lP~t~~~~GKi~  538 (552)
T PRK09274        516 AGIERFLIHPSFPVDIRHNAKIF  538 (552)
T ss_pred             cceeEEeccCCCCcccccccccc
Confidence            377899999999987  699973

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.1e-61  Score=471.79  Aligned_cols=483  Identities=20%  Similarity=0.289  Sum_probs=412.0

Q ss_pred             hhhHHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCC
Q 006530           21 RHGFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGA  100 (641)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~  100 (641)
                      ...|...+.++++++|+|+|+++++..   +||+||+++++++|.+|.++||++||+|.+.+||..+|++++||++++|+
T Consensus        27 d~~l~d~L~~~A~~~pdriAv~d~~~~---~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv  103 (542)
T COG1021          27 DRTLTDILTDHAARYPDRIAVIDGERR---LSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGV  103 (542)
T ss_pred             CCcHHHHHHHHHhhcCCceEEecCccc---ccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcCc
Confidence            346777888899999999999998855   99999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHHHHHhcCceEEEecCh----hhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHH
Q 006530          101 INVVRGSRSSSEELLHIYNHSESVALAVENP----EFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEI  176 (641)
Q Consensus       101 ~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  176 (641)
                      .+|.--|..-..++.+..+.++++++|+++.    ....-..+...+.+.++++++.++....           ...+..
T Consensus       104 ~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~-----------~~~~~~  172 (542)
T COG1021         104 APVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHP-----------SVLEAA  172 (542)
T ss_pred             chhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCc-----------chhhhh
Confidence            9999889999999999999999999999753    2223344556677888888876322111           111222


Q ss_pred             HHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChh
Q 006530          177 IDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPW  256 (641)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~  256 (641)
                      +.......            .+..+.+++++++++.+.||||.||.+..+|.....++.+-.+.+++++.+++++.+|..
T Consensus       173 ~~~~a~~~------------~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~A  240 (542)
T COG1021         173 LCHPAGLF------------TPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAA  240 (542)
T ss_pred             hhCccccC------------CcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccc
Confidence            22111111            233556788999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHH--hHhhhhcCeeEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhH
Q 006530          257 HVYERAC--GYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISF  331 (641)
Q Consensus       257 ~~~g~~~--~~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (641)
                      |.+.+.+  .++.+.+|+++|+.   ++......|.++++|+...+|.....+.+..+..                    
T Consensus       241 HNfplssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~--------------------  300 (542)
T COG1021         241 HNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWE--------------------  300 (542)
T ss_pred             cCCCCCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcc--------------------
Confidence            9999886  67789999999995   5788899999999999999999998887765543                    


Q ss_pred             HHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHH
Q 006530          332 AYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLF  410 (641)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~  410 (641)
                                                                             +.+++|+|.+-+||+.+++.+ ++.
T Consensus       301 -------------------------------------------------------~~~LsSLrllQVGGarl~~~~Arrv  325 (542)
T COG1021         301 -------------------------------------------------------RADLSSLRLLQVGGARLSATLARRV  325 (542)
T ss_pred             -------------------------------------------------------cCCchheeEEeecCcccCHHHHhhc
Confidence                                                                   257788899999999999998 666


Q ss_pred             HHHcCCeeeeccccccccCeeeecCCCC--CcccccccCcC-CcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCc
Q 006530          411 YEAIGVKVQVGYGLTESSPVIAARRPTC--NVLGSVGHPIN-HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNP  487 (641)
Q Consensus       411 ~~~~~~~v~~~yG~tE~~~~~~~~~~~~--~~~~~~G~~~~-~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~  487 (641)
                      ...+|+.+-+.|||.|.....+ +.++.  .-..+-|+|+. .=+++|+| ++++++++|++|+|..+||..++|||+.|
T Consensus       326 ~~~lgC~LQQVFGMAEGLvnyT-RLDDp~E~i~~TQGrPlsP~DEvrvvD-~dg~pv~pGE~G~LltRGPYTirGYyrap  403 (542)
T COG1021         326 PAVLGCQLQQVFGMAEGLVNYT-RLDDPPEIIIHTQGRPLSPDDEVRVVD-ADGNPVAPGEVGELLTRGPYTIRGYYRAP  403 (542)
T ss_pred             hhhhCchHHHHhhhhhhhhccc-ccCCchHheeecCCCcCCCcceeEEec-CCCCCCCCCCcceeeecCCeeeeeeccCc
Confidence            6778999999999999864443 23222  23356788875 56899999 67999999999999999999999999999


Q ss_pred             hhhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCC
Q 006530          488 SATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ  567 (641)
Q Consensus       488 ~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~  567 (641)
                      +.+..+|+.+|||+|||++++++          ||++.+.||.||+|+ .+|+||..+|||+.|.+||.|.+|++|+.+|
T Consensus       404 ~HNa~aF~a~GFYrsGD~V~~~~----------dGyl~V~GR~KDQIN-RgGEKIAAeEvEn~LL~HP~V~~AAlVampD  472 (542)
T COG1021         404 EHNARAFDADGFYRSGDLVRRDP----------DGYLVVEGRVKDQIN-RGGEKIAAEEVENLLLRHPAVHDAALVAMPD  472 (542)
T ss_pred             hhhhhccCcCCceecCceeEecC----------CceEEEEeeehhhhc-cccchhhHHHHHHHHhhCchhhhhhhhcCch
Confidence            99999999999999999999999          999999999999998 5999999999999999999999999999998


Q ss_pred             Cce----EEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHH-HHhHhccCCCccccEEEecCCCCCCCCcc
Q 006530          568 RRP----GAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCL  639 (641)
Q Consensus       568 ~~~----~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~~~~~~~~~i~~~~~~~~~~~~~l  639 (641)
                      +.+    +|+|+++.                 ...+..+|+.++++. |.+|+     .|.+|.+++..|.+.=||+
T Consensus       473 elLGEksCAfiv~~~-----------------~~~~~~qlr~~L~~~GlAa~K-----~PDrie~v~~~P~T~VGKI  527 (542)
T COG1021         473 ELLGEKSCAFIVVKE-----------------PPLRAAQLRRFLRERGLAAFK-----LPDRIEFVDSLPLTAVGKI  527 (542)
T ss_pred             hhcCcceeEEEEecC-----------------CCCCHHHHHHHHHHcchhhhc-----CCcceeecccCCCcccccc
Confidence            754    48888874                 347889999999988 99999     8899999999999999987

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.1e-59  Score=523.85  Aligned_cols=478  Identities=18%  Similarity=0.234  Sum_probs=389.2

Q ss_pred             hHHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q 006530           23 GFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN  102 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~  102 (641)
                      .+...+++.++++|+++|+...++   ++||+||.++++++|++|.++|+++||+|+++++|+++++++++||+++|+++
T Consensus        44 ~~~~~l~~~a~~~p~~~a~~~~~~---~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  120 (537)
T PRK13382         44 GPTSGFAIAAQRCPDRPGLIDELG---TLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADI  120 (537)
T ss_pred             CHHHHHHHHHHhCCCCeEEEeCCC---eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcEE
Confidence            466777888889999999887654   59999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhh
Q 006530          103 VVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRE  182 (641)
Q Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (641)
                      +|+++.++.+++.++++.++++++|++. .....+.......+....++...+..           ....++++......
T Consensus       121 vpl~~~~~~~~l~~~l~~~~~~~vi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~  188 (537)
T PRK13382        121 LLLNTSFAGPALAEVVTREGVDTVIYDE-EFSATVDRALADCPQATRIVAWTDED-----------HDLTVEVLIAAHAG  188 (537)
T ss_pred             EecCcccCHHHHHHHHHhcCCCEEEEch-hhHHHHHHHHhhccccceEEEecCCc-----------ccccHHHHhhccCc
Confidence            9999999999999999999999999985 44444444333333333333222110           01234444332110


Q ss_pred             hhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHH
Q 006530          183 SRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERA  262 (641)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~  262 (641)
                                     ......+++.++++|||||||.||||.++|+++..........+....+++++..+|++|++++.
T Consensus       189 ---------------~~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~  253 (537)
T PRK13382        189 ---------------QRPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFS  253 (537)
T ss_pred             ---------------CCCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHH
Confidence                           01123467889999999999999999999999988888777778888999999999999999997


Q ss_pred             HhHhhhhcCeeEEe---cchHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhH
Q 006530          263 CGYFIFSRGIELMY---TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRI  339 (641)
Q Consensus       263 ~~~~~l~~G~~~v~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (641)
                      ..+.++..|+++++   +++..+++.++++++|++.++|+++..+.+.......                          
T Consensus       254 ~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~--------------------------  307 (537)
T PRK13382        254 QLVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRN--------------------------  307 (537)
T ss_pred             HHHHHHhcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcc--------------------------
Confidence            77888899999888   4688999999999999999999999988653211000                          


Q ss_pred             hcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHcCCee
Q 006530          340 YEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKV  418 (641)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~~~~v  418 (641)
                                                                     ..++.++|.+++||+++++++ ..+.+.++.++
T Consensus       308 -----------------------------------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i  340 (537)
T PRK13382        308 -----------------------------------------------RYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVI  340 (537)
T ss_pred             -----------------------------------------------cCCccceeEEEEcCCCCCHHHHHHHHHHcCCcE
Confidence                                                           012234599999999999987 56666788899


Q ss_pred             eeccccccccCeeeecCCC-CCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccCCC
Q 006530          419 QVGYGLTESSPVIAARRPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED  497 (641)
Q Consensus       419 ~~~yG~tE~~~~~~~~~~~-~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~  497 (641)
                      ++.||+||++.++..+... ...++++|.|+++++++|+|+ ++++++.|+.|||+++|+.++.||+  ++.+. .+ .+
T Consensus       341 ~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~-~~~~~~~g~~GEl~v~g~~~~~gY~--~~~~~-~~-~~  415 (537)
T PRK13382        341 YNNYNATEAGMIATATPADLRAAPDTAGRPAEGTEIRILDQ-DFREVPTGEVGTIFVRNDTQFDGYT--SGSTK-DF-HD  415 (537)
T ss_pred             EecccccccCcceecChhHhccCCCCccccCcCcEEEEECC-CCCCCCCCCeeEEEEEcCCcccCcc--ccchh-hc-cC
Confidence            9999999998766544322 245678999999999999995 5788999999999999999999998  44443 34 37


Q ss_pred             CccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC----ceEEE
Q 006530          498 GWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAI  573 (641)
Q Consensus       498 g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----~~~a~  573 (641)
                      |||+|||++++++          +|.+++.||++|+|+. +|++|+|.+||+.|.+||+|.+++|++.+++    .+.++
T Consensus       416 g~~~TGDl~~~~~----------~g~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~  484 (537)
T PRK13382        416 GFMASGDVGYLDE----------NGRLFVVGRDDEMIVS-GGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAF  484 (537)
T ss_pred             CCEeeCceEEEeC----------CCcEEEeccccceeEE-CCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEE
Confidence            9999999999999          9999999999999997 9999999999999999999999999998765    36688


Q ss_pred             EecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          574 IVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       574 vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                      |+++++                ...+.++++++++++|+.|+     .|+.|.++++.|.+.+||+.
T Consensus       485 vv~~~~----------------~~~~~~~l~~~l~~~l~~~~-----~P~~i~~v~~lP~t~~gK~~  530 (537)
T PRK13382        485 VVLKPG----------------ASATPETLKQHVRDNLANYK-----VPRDIVVLDELPRGATGKIL  530 (537)
T ss_pred             EEECCC----------------CCCCHHHHHHHHHHhccCCC-----CCcEEEEeccCCCCCCCCCc
Confidence            887643                24567889999999999998     77789999999999999973

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.9e-60  Score=530.11  Aligned_cols=487  Identities=19%  Similarity=0.264  Sum_probs=391.4

Q ss_pred             HHHhhhhh-hhhhhhhhcccC-CceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEE
Q 006530           26 VFTRNCVD-AVATRIRISRRN-HRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINV  103 (641)
Q Consensus        26 ~~~~~~~~-~~~~~~a~~~~~-~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v  103 (641)
                      ..++++++ ..|+++|+...+ ...+++||+||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus        47 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v  126 (570)
T PRK04319         47 EAIDRHADGGRKDKVALRYLDASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVG  126 (570)
T ss_pred             HHHHHhhccCCCCceEEEEECCCCceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEc
Confidence            44455554 468899887543 2457899999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhh
Q 006530          104 VRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRES  183 (641)
Q Consensus       104 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (641)
                      |+++.++.+++.++++.++++.+++++ ........  ...+.++.++.+.+....       ..+...+.+++......
T Consensus       127 pl~~~~~~~~l~~~l~~~~~~~ii~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~  196 (570)
T PRK04319        127 PLFEAFMEEAVRDRLEDSEAKVLITTP-ALLERKPA--DDLPSLKHVLLVGEDVEE-------GPGTLDFNALMEQASDE  196 (570)
T ss_pred             ccccccCHHHHHHHHHccCCcEEEECh-hhhhccch--hcCCCceEEEEECCCcCC-------CcCccCHHHHHhhcCCc
Confidence            999999999999999999999999985 33222211  133445555554322110       11234666665432211


Q ss_pred             hcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHHH
Q 006530          184 RKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC  263 (641)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~  263 (641)
                                   .......++++++++|||||||.||||.++|++++..+......+++.++|++++..|++|.++...
T Consensus       197 -------------~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~  263 (570)
T PRK04319        197 -------------FDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTGTSY  263 (570)
T ss_pred             -------------CCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCChHHhhCchH
Confidence                         1123346789999999999999999999999999988888888888999999999999999988754


Q ss_pred             -hHhhhhcCeeEEec----chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHh
Q 006530          264 -GYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKR  338 (641)
Q Consensus       264 -~~~~l~~G~~~v~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (641)
                       .+.++..|+++++.    ++..+++.++++++|+++++|+++..+.+......                          
T Consensus       264 ~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--------------------------  317 (570)
T PRK04319        264 GIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLV--------------------------  317 (570)
T ss_pred             HHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCccc--------------------------
Confidence             66779999998874    57899999999999999999999998865311100                          


Q ss_pred             HhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhHHH-HHHHcCCe
Q 006530          339 IYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGVK  417 (641)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l~~-~~~~~~~~  417 (641)
                                                                     ....++++|.+++||+++++++.+ +.+.++.+
T Consensus       318 -----------------------------------------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~  350 (570)
T PRK04319        318 -----------------------------------------------KKYDLSSLRHILSVGEPLNPEVVRWGMKVFGLP  350 (570)
T ss_pred             -----------------------------------------------ccCCcccceEEEEcccCCCHHHHHHHHHHhCCC
Confidence                                                           002345569999999999998855 44557999


Q ss_pred             eeeccccccccCeeeecCCC-CCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEec--CcccccccCCchhhhhcc
Q 006530          418 VQVGYGLTESSPVIAARRPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG--SQVMQGYFKNPSATKQAL  494 (641)
Q Consensus       418 v~~~yG~tE~~~~~~~~~~~-~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g--~~~~~gY~~~~~~~~~~~  494 (641)
                      +++.||+||++..+...... ...++++|.|+++++++|+|+ ++.+++.|+.|||+++|  +.++.||+++++.+.+.|
T Consensus       351 i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~-~~~~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~  429 (570)
T PRK04319        351 IHDNWWMTETGGIMIANYPAMDIKPGSMGKPLPGIEAAIVDD-QGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYF  429 (570)
T ss_pred             eEeceeecccCCEEEecCCCCCCCCCcCcCCCCCCEEEEECC-CCCCCCCCCceEEEEcCCCChHHhHhcCCHHHhhhhh
Confidence            99999999998766544332 345688999999999999994 56778999999999997  899999999999999888


Q ss_pred             CCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC----ce
Q 006530          495 DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RP  570 (641)
Q Consensus       495 ~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----~~  570 (641)
                      . +|||+|||++++++          +|.++++||++|+|+. +|++|+|.+||+.|.+||+|.+++|++.+++    .+
T Consensus       430 ~-~gw~~TGDl~~~~~----------~g~l~~~GR~~d~i~~-~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~  497 (570)
T PRK04319        430 A-GDWYVSGDSAYMDE----------DGYFWFQGRVDDVIKT-SGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEII  497 (570)
T ss_pred             c-CCceEeCcEEEECC----------CeeEEEEecCCCEEEE-CCEEECHHHHHHHHhhCCCeeecceecccCcCCceEE
Confidence            5 89999999999999          9999999999999997 9999999999999999999999999998765    45


Q ss_pred             EEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCcc
Q 006530          571 GAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  639 (641)
Q Consensus       571 ~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l  639 (641)
                      .++|++.++.             ...+...++++++++++|+.|+     +|++|+++++.|.+.+||+
T Consensus       498 ~a~v~~~~~~-------------~~~~~~~~~l~~~~~~~l~~~~-----~P~~i~~v~~iP~t~~GKv  548 (570)
T PRK04319        498 KAFVALRPGY-------------EPSEELKEEIRGFVKKGLGAHA-----APREIEFKDKLPKTRSGKI  548 (570)
T ss_pred             EEEEEECCCC-------------CCCHHHHHHHHHHHHHhccccc-----CCcEEEEeCCCCCCCchhh
Confidence            5677765431             0011223678888888888888     7888999999999999997

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=6.1e-60  Score=536.03  Aligned_cols=505  Identities=17%  Similarity=0.147  Sum_probs=386.7

Q ss_pred             hhhhhhhHHHHHhhhhhhhhhhhhhccc--CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHH
Q 006530           17 LDYHRHGFRVFTRNCVDAVATRIRISRR--NHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQG   94 (641)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA   94 (641)
                      ..||.....++++++.++.++++|++..  ++..+++||+||.+++.++|+.|.++|+++||+|+++++|++++++++||
T Consensus        79 ~~wf~~~~~n~~~~~~~~~~~~~a~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA  158 (652)
T TIGR01217        79 AQWFPGARLNYAENLLRAAGTEPALLYVDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLA  158 (652)
T ss_pred             CEECCCCeeeHHHHHhccCCCCeEEEEECCCCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            5677777778888888777788887653  45668899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEecCCCCCHHHHHHHHHhcCceEEEecChh--------hHHHHHHhhcccccccEEEEEeCCCCCCCCCccC
Q 006530           95 MLATGAINVVRGSRSSSEELLHIYNHSESVALAVENPE--------FFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVE  166 (641)
Q Consensus        95 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~--------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  166 (641)
                      |+++|++++|+++.++.+++.+++++++++++|+++..        ....+.+.....+.++.++.+........... .
T Consensus       159 ~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~  237 (652)
T TIGR01217       159 TASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETEAP-K  237 (652)
T ss_pred             HHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeCCCCcccccc-c
Confidence            99999999999999999999999999999999998632        24455555555566666665532111000000 0


Q ss_pred             CCCcccHHHHHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHH-HHHHHHhhhcCCCC
Q 006530          167 EIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLL-HQIRSLYDIVPAEN  245 (641)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~-~~~~~~~~~~~~~~  245 (641)
                      ......|++++.......            ........+++++|+|||||||.||||+++|++++ .........+++.+
T Consensus       238 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~  305 (652)
T TIGR01217       238 IDGALDLEDFTAAAQAAE------------LVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGP  305 (652)
T ss_pred             ccCcccHHHHHhcccCCC------------CCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCC
Confidence            012345666654321100            11233467899999999999999999999999865 34445555678999


Q ss_pred             CCEEEEECChhhHHHHHHhHhhhhcCeeEEec-------chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHH
Q 006530          246 GDKFLSMLPPWHVYERACGYFIFSRGIELMYT-------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAA  318 (641)
Q Consensus       246 ~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~-------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~  318 (641)
                      +|+++++.|+.|+.+ ...+.++..|+++++.       ++..+++.++++++|++...|.++..+......      . 
T Consensus       306 ~d~~~~~~~~~~~~~-~~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~------~-  377 (652)
T TIGR01217       306 GDRLFYYTTTGWMMW-NWLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVH------P-  377 (652)
T ss_pred             CcEEEEeCCcchhhh-HHHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCC------c-
Confidence            999999999999864 3355789999999984       356889999999999987777766554321000      0 


Q ss_pred             HHHHHHHHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEe
Q 006530          319 RRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVS  398 (641)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~  398 (641)
                                                                                        .-..+++++|.+++
T Consensus       378 ------------------------------------------------------------------~~~~~l~sLr~i~~  391 (652)
T TIGR01217       378 ------------------------------------------------------------------ARTHDLSALQCVAS  391 (652)
T ss_pred             ------------------------------------------------------------------cccCChhheeEEEe
Confidence                                                                              00124556799999


Q ss_pred             ecCCCChhHHHH-HHHcC--CeeeeccccccccCeee-ecCCCCCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEE
Q 006530          399 GGGSLPMHIDLF-YEAIG--VKVQVGYGLTESSPVIA-ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV  474 (641)
Q Consensus       399 gG~~l~~~l~~~-~~~~~--~~v~~~yG~tE~~~~~~-~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v  474 (641)
                      ||+++++++.++ .+.++  ..+.+.||+||++.... ..+......+++|.|.+|++++|+|+ +++++ .|+.|||++
T Consensus       392 gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~ivd~-~g~~~-~g~~GEl~v  469 (652)
T TIGR01217       392 TGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGANPTLPVHIGEIQAPGLGTAVQSWDP-EGKPV-TGEVGELVC  469 (652)
T ss_pred             ecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCCCCCCCcCCccCCCcCCCceEEECC-CCCCC-CCCccEEEE
Confidence            999999998554 45554  46778999999743332 22222344578999999999999994 56666 599999999


Q ss_pred             ecC--cccccccCCchhhh--hcc-C-CCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhH
Q 006530          475 RGS--QVMQGYFKNPSATK--QAL-D-EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELE  548 (641)
Q Consensus       475 ~g~--~~~~gY~~~~~~~~--~~~-~-~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE  548 (641)
                      +||  .++.||+++++.++  +.+ . .+|||+|||+|++|+          ||+++|+||+||+|+. +|++|+|.|||
T Consensus       470 ~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~----------dG~l~i~GR~dd~I~~-~G~ri~p~EIE  538 (652)
T TIGR01217       470 TNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTP----------RGGIVIHGRSDSTLNP-QGVRMGSAEIY  538 (652)
T ss_pred             ecCCCccccceeCCCccchhHHhhhcCCCCEEEcCCcEEECC----------CCcEEEEecccCeEec-CCEEcCHHHHH
Confidence            996  68999999997654  232 2 268999999999999          9999999999999996 99999999999


Q ss_pred             HHHhcCcccceEEEEecCCC----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCcccc
Q 006530          549 EAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGP  624 (641)
Q Consensus       549 ~~l~~~p~V~~~~v~g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~  624 (641)
                      ++|.+||+|.||+|+|.+++    .+.++|+++++.             .......++++++++++|+.|+     .|++
T Consensus       539 ~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~~-------------~~~~~~~~~l~~~~~~~l~~~~-----~P~~  600 (652)
T TIGR01217       539 NAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGA-------------TLDDALLDRIKRTIRAGLSPRH-----VPDE  600 (652)
T ss_pred             HHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCCC-------------CCCHHHHHHHHHHHHhhCCCCc-----CCCE
Confidence            99999999999999998754    577888886531             0011123578888888888888     7788


Q ss_pred             EEEecCCCCCCCCcc
Q 006530          625 IHVVDEPFTVNFLCL  639 (641)
Q Consensus       625 i~~~~~~~~~~~~~l  639 (641)
                      |+++++.|.+.|||+
T Consensus       601 i~~v~~lP~T~sGKi  615 (652)
T TIGR01217       601 IIEVPGIPHTLTGKR  615 (652)
T ss_pred             EEECCCCCCCCCccC
Confidence            999999999999997

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.6e-59  Score=534.47  Aligned_cols=504  Identities=16%  Similarity=0.120  Sum_probs=389.7

Q ss_pred             hhhhhhhHHHHHhhhhh-hhhhhhhhccc--CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHH
Q 006530           17 LDYHRHGFRVFTRNCVD-AVATRIRISRR--NHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQ   93 (641)
Q Consensus        17 ~~~~~~~~~~~~~~~~~-~~~~~~a~~~~--~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~l   93 (641)
                      .+||...-.+++++..+ ..|+++|++..  ++..+++||+||.++++++|+.|.+.|+++||+|+|+++|++++++++|
T Consensus        78 ~~wf~~~~~n~~~~~~~~~~~~~~Al~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~l  157 (655)
T PRK03584         78 ARWFPGARLNYAENLLRHRRDDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAML  157 (655)
T ss_pred             CeeCCCCEeeHHHHhhccCCCCCeEEEEECCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence            46666666667777765 47899998754  4567899999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEEecCCCCCHHHHHHHHHhcCceEEEecChh--------hHHHHHHhhcccccccEEEEEeCCCCCCCCCcc
Q 006530           94 GMLATGAINVVRGSRSSSEELLHIYNHSESVALAVENPE--------FFNRIAETLCSKAAMRFIILLWGKKSSVAPDIV  165 (641)
Q Consensus        94 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~--------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  165 (641)
                      ||+++|++++|+++.++.+++.+++++++++++|+++..        ....+.+.....+.++.++.+......  ....
T Consensus       158 A~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~  235 (655)
T PRK03584        158 ATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGPA--AAAA  235 (655)
T ss_pred             HHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEecCCCc--cccc
Confidence            999999999999999999999999999999999997631        233444444455555566655422110  0000


Q ss_pred             CCCCcccHHHHHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHH-HHHHHHhhhcCCC
Q 006530          166 EEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLL-HQIRSLYDIVPAE  244 (641)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~-~~~~~~~~~~~~~  244 (641)
                      .......|++++.......            ........+++++|+|||||||.||||++||++++ +.+......+++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~  303 (655)
T PRK03584        236 ALPGALLWEDFLAPAEAAE------------LEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLG  303 (655)
T ss_pred             ccCCcccHHHHhhccccCC------------CCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCC
Confidence            1122355666654211110            12234567999999999999999999999999875 4455566678899


Q ss_pred             CCCEEEEECChhhHHHHHHhHhhhhcCeeEEec-------chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccH
Q 006530          245 NGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSA  317 (641)
Q Consensus       245 ~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~-------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~  317 (641)
                      ++|++++..++.|+.+. ..+.++..|+++++.       ++..+++.++++++|++..+|+++..+.+.....      
T Consensus       304 ~~d~~~~~~~~~~~~~~-~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~------  376 (655)
T PRK03584        304 PGDRFFWYTTCGWMMWN-WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVP------  376 (655)
T ss_pred             CCCEEEEcCCchHHhHH-HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCc------
Confidence            99999999999887653 356779999999874       4678999999999999999999998775420000      


Q ss_pred             HHHHHHHHHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEE
Q 006530          318 ARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGV  397 (641)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~  397 (641)
                                                                                         ....+++++|.++
T Consensus       377 -------------------------------------------------------------------~~~~~l~sLr~i~  389 (655)
T PRK03584        377 -------------------------------------------------------------------GETHDLSALRTIG  389 (655)
T ss_pred             -------------------------------------------------------------------cccCChhheEEEE
Confidence                                                                               0012345669999


Q ss_pred             eecCCCChhHH-HHHHHc--CCeeeeccccccccCeeeec-CCCCCcccccccCcCCcEEEEeeCCCCccCCCCCCceEE
Q 006530          398 SGGGSLPMHID-LFYEAI--GVKVQVGYGLTESSPVIAAR-RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVK  473 (641)
Q Consensus       398 ~gG~~l~~~l~-~~~~~~--~~~v~~~yG~tE~~~~~~~~-~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~  473 (641)
                      +||+++++++. .+.+.+  +..+.+.||+||++..+... +.....++++|.|.+|++++|+|+ +++++ .|+.|||+
T Consensus       390 ~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~~~ivd~-~g~~~-~g~~GeL~  467 (655)
T PRK03584        390 STGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGGNPLLPVYRGEIQCRGLGMAVEAWDE-DGRPV-VGEVGELV  467 (655)
T ss_pred             EecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccCCCCCCcCCCccCCCcCCceeEEECC-CCCCC-CCCceEEE
Confidence            99999999884 455556  47899999999986443322 222345688999999999999994 57777 79999999


Q ss_pred             EecC--cccccccCCchhhh--hccC--CCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHh
Q 006530          474 VRGS--QVMQGYFKNPSATK--QALD--EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLEL  547 (641)
Q Consensus       474 v~g~--~~~~gY~~~~~~~~--~~~~--~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~i  547 (641)
                      |+||  +++.||+++++.++  +.+.  .+|||+|||+|++|+          ||+++|+||+||+|++ +|++|+|.||
T Consensus       468 v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~----------dG~l~i~GR~dd~Ik~-~G~rI~p~EI  536 (655)
T PRK03584        468 CTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITE----------HGGVVIYGRSDATLNR-GGVRIGTAEI  536 (655)
T ss_pred             EccCCCCCcceeeCCCccchHHHhhhccCCCEeecCCeEEECC----------CCeEEEEeeccCeeec-CcEEECHHHH
Confidence            9996  78999999987543  2221  257899999999999          9999999999999997 9999999999


Q ss_pred             HHHHhcCcccceEEEEecCC----CceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccc
Q 006530          548 EEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIG  623 (641)
Q Consensus       548 E~~l~~~p~V~~~~v~g~~~----~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~  623 (641)
                      |++|.+||+|.+|+|+|.++    +.+.++|+++++.             .......++++++++++|+.|+     .|+
T Consensus       537 E~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~-------------~~~~~~~~~l~~~~~~~L~~~~-----~P~  598 (655)
T PRK03584        537 YRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGV-------------TLDDALRARIRTTIRTNLSPRH-----VPD  598 (655)
T ss_pred             HHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCCC-------------CCcHHHHHHHHHHHHhhCCCCc-----CCC
Confidence            99999999999999999876    4677888887531             0011123578888888888887     778


Q ss_pred             cEEEecCCCCCCCCcc
Q 006530          624 PIHVVDEPFTVNFLCL  639 (641)
Q Consensus       624 ~i~~~~~~~~~~~~~l  639 (641)
                      .|+++++.|.+.|||+
T Consensus       599 ~i~~v~~lP~t~sGKi  614 (655)
T PRK03584        599 KIIAVPDIPRTLSGKK  614 (655)
T ss_pred             EEEECCCCCCCCCccc
Confidence            8999999999999997

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.8e-59  Score=529.43  Aligned_cols=503  Identities=19%  Similarity=0.208  Sum_probs=384.0

Q ss_pred             HHHHhhhhhhhhhhhhhccc---CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCE
Q 006530           25 RVFTRNCVDAVATRIRISRR---NHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAI  101 (641)
Q Consensus        25 ~~~~~~~~~~~~~~~a~~~~---~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~  101 (641)
                      .+.+++++...|+++|++..   ++..+++||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus        56 ~~~l~~~~~~~p~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav  135 (629)
T PRK10524         56 HNAVDRHLAKRPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGAI  135 (629)
T ss_pred             HHHHHHhhccCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcE
Confidence            44455555667899998753   345688999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHHhcCceEEEecChh--------hHHHHHHhhccc-ccccEEEEEeCCCCCCCCCccCCCCccc
Q 006530          102 NVVRGSRSSSEELLHIYNHSESVALAVENPE--------FFNRIAETLCSK-AAMRFIILLWGKKSSVAPDIVEEIPVFS  172 (641)
Q Consensus       102 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~--------~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~  172 (641)
                      ++|+++.++.+++.+++++++++++|+++..        +.+.+.+..... .....++.+........   ........
T Consensus       136 ~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~---~~~~~~~~  212 (629)
T PRK10524        136 HSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPMA---RVAGRDVD  212 (629)
T ss_pred             EEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcC---cccCCccc
Confidence            9999999999999999999999999997531        223333333322 23345555443211100   00111234


Q ss_pred             HHHHHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHH-HHHhhhcCCCCCCEEEE
Q 006530          173 YDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI-RSLYDIVPAENGDKFLS  251 (641)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~-~~~~~~~~~~~~d~~l~  251 (641)
                      |.++........            .+.....++++++++|||||||.||||+++|++++... ......+++.++|++++
T Consensus       213 ~~~~~~~~~~~~------------~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  280 (629)
T PRK10524        213 YATLRAQHLGAR------------VPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFC  280 (629)
T ss_pred             HHHHHhcCCCCC------------CCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            555443221100            11223467899999999999999999999999875433 34455678889999999


Q ss_pred             ECChhhHHHHHH-hHhhhhcCeeEEec-------chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHH
Q 006530          252 MLPPWHVYERAC-GYFIFSRGIELMYT-------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVA  323 (641)
Q Consensus       252 ~~pl~~~~g~~~-~~~~l~~G~~~v~~-------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~  323 (641)
                      ..|+.|+.+... .+.++..|+++++.       ++..+++.++++++|+++++|+++..+.+......           
T Consensus       281 ~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-----------  349 (629)
T PRK10524        281 ASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALL-----------  349 (629)
T ss_pred             cCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccc-----------
Confidence            999999888654 56679999998874       36778999999999999999999987754210000           


Q ss_pred             HHHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCC
Q 006530          324 RALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSL  403 (641)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l  403 (641)
                                                                                    -..+++++|.+++||+++
T Consensus       350 --------------------------------------------------------------~~~~l~~lr~i~~~Ge~l  367 (629)
T PRK10524        350 --------------------------------------------------------------RKHDLSSLRALFLAGEPL  367 (629)
T ss_pred             --------------------------------------------------------------cccChhheeEEEEeCCCC
Confidence                                                                          001334569999999999


Q ss_pred             ChhHHHHH-HHcCCeeeeccccccccCeeeecCC----CCCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecC-
Q 006530          404 PMHIDLFY-EAIGVKVQVGYGLTESSPVIAARRP----TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS-  477 (641)
Q Consensus       404 ~~~l~~~~-~~~~~~v~~~yG~tE~~~~~~~~~~----~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~-  477 (641)
                      ++.+.+++ +.++.++++.||+||++........    ....++++|.|++|++++|+|++++++++.|+.|||+++|| 
T Consensus       368 ~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~~Gel~i~gp~  447 (629)
T PRK10524        368 DEPTASWISEALGVPVIDNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVLVIEGPL  447 (629)
T ss_pred             CHHHHHHHHHhcCCCeEeccccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEEeCCCCCCCCCCCcEEEEEcCCC
Confidence            99985554 5579999999999999743322221    12346789999999999999965889999999999999998 


Q ss_pred             --cccccccCCchhhhhccC---CCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHh
Q 006530          478 --QVMQGYFKNPSATKQALD---EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAAL  552 (641)
Q Consensus       478 --~~~~gY~~~~~~~~~~~~---~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~  552 (641)
                        .++.||+++++.+.+.+.   .++||+|||+|++++          ||.++|.||.||+|++ +|++|+|.|||++|.
T Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~----------dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~  516 (629)
T PRK10524        448 PPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDWGIRDA----------DGYYFILGRTDDVINV-AGHRLGTREIEESIS  516 (629)
T ss_pred             ChhhcCCccCChHHHHHhhhccCCCcEEEcCCcEEEcC----------CCcEEEEEEecCeEEe-CCEEeCHHHHHHHHH
Confidence              578899999988776542   368999999999999          9999999999999998 899999999999999


Q ss_pred             cCcccceEEEEecCCC----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEe
Q 006530          553 RSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVV  628 (641)
Q Consensus       553 ~~p~V~~~~v~g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~  628 (641)
                      +||+|.+|+|++.+++    .+.++|+++.+..        ...........++++++++++|+.|+     .|++|+++
T Consensus       517 ~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~--------~~~~~~~~~~~~~i~~~~~~~l~~~~-----~P~~i~~v  583 (629)
T PRK10524        517 SHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDS--------LADREARLALEKEIMALVDSQLGAVA-----RPARVWFV  583 (629)
T ss_pred             hCCCcceEEEEccccCCCCeEEEEEEEECCCCc--------cccccchHHHHHHHHHHHHhhcCCCc-----CCCEEEEc
Confidence            9999999999998765    4668888764310        00000011234677788888888877     77889999


Q ss_pred             cCCCCCCCCcc
Q 006530          629 DEPFTVNFLCL  639 (641)
Q Consensus       629 ~~~~~~~~~~l  639 (641)
                      ++.|.+.+||+
T Consensus       584 ~~lP~T~sGKi  594 (629)
T PRK10524        584 SALPKTRSGKL  594 (629)
T ss_pred             CCCCCCCCcch
Confidence            99999999997

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7.6e-59  Score=518.95  Aligned_cols=493  Identities=23%  Similarity=0.300  Sum_probs=397.9

Q ss_pred             HHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q 006530           24 FRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVI-GVKPEEKLSLFSDNSCRWLVADQGMLATGAIN  102 (641)
Q Consensus        24 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~-Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~  102 (641)
                      +...+++.++++|+++|+...+.   ++||+||.+++.++|..|.+. |+++||+|+++++|+++++++++||+++|+++
T Consensus        12 l~~~l~~~a~~~~~~~a~~~~~~---~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~   88 (546)
T PRK08314         12 LFHNLEVSARRYPDKTAIVFYGR---AISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVV   88 (546)
T ss_pred             HHHHHHHHHHHcCCCcceeecCc---eecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHHHcCcEE
Confidence            44445566678899999887663   599999999999999999999 99999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCC-----CCCCCC----------ccCC
Q 006530          103 VVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKK-----SSVAPD----------IVEE  167 (641)
Q Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~----------~~~~  167 (641)
                      +|+++..+.+++.++++.++++.+++++ .....+.+..... .++.++......     ......          ...+
T Consensus        89 v~l~~~~~~~~l~~~l~~~~~~~ii~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (546)
T PRK08314         89 VPVNPMNREEELAHYVTDSGARVAIVGS-ELAPKVAPAVGNL-RLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAP  166 (546)
T ss_pred             eecCcCcCHHHHHHHHHhCCCeEEEEcc-chhhhHHHHhhcc-CcceEEEecchhhcccccccCcccccccccccccccc
Confidence            9999999999999999999999999985 4444444433322 233333221000     000000          0001


Q ss_pred             CCcccHHHHHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCC
Q 006530          168 IPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGD  247 (641)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d  247 (641)
                      .+...|++++.....              .......++++++++|||||||.||+|.++|++++..+......+++.++|
T Consensus       167 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d  232 (546)
T PRK08314        167 GGVVAWKEALAAGLA--------------PPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPES  232 (546)
T ss_pred             cccccHHHHhcccCC--------------CCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCc
Confidence            123345554432110              112345678999999999999999999999999999988888888899999


Q ss_pred             EEEEECChhhHHHHHH-hHhhhhcCeeEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHH
Q 006530          248 KFLSMLPPWHVYERAC-GYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVA  323 (641)
Q Consensus       248 ~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~  323 (641)
                      ++++.+|++|.+|+.. .+.++..|+++++.   ++..+.+.++++++|++.++|.++..+.......            
T Consensus       233 ~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~------------  300 (546)
T PRK08314        233 VVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLA------------  300 (546)
T ss_pred             eEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCcc------------
Confidence            9999999999999865 55679999999985   4678899999999999999999988775421100            


Q ss_pred             HHHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCC
Q 006530          324 RALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSL  403 (641)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l  403 (641)
                                                                                     ...++++|.+++||+++
T Consensus       301 ---------------------------------------------------------------~~~~~~l~~~~~gG~~~  317 (546)
T PRK08314        301 ---------------------------------------------------------------ERDLSSLRYIGGGGAAM  317 (546)
T ss_pred             ---------------------------------------------------------------ccCchhhheeeeccccC
Confidence                                                                           01223348999999999


Q ss_pred             ChhH-HHHHHHcCCeeeeccccccccCeeeecCCCCCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCccccc
Q 006530          404 PMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQG  482 (641)
Q Consensus       404 ~~~l-~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g  482 (641)
                      +..+ +++.+.++.++++.||+||++.............+++|.|+++++++|+|++++.+++.|+.|||+++|++++.|
T Consensus       318 ~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~g  397 (546)
T PRK08314        318 PEAVAERLKELTGLDYVEGYGLTETMAQTHSNPPDRPKLQCLGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKG  397 (546)
T ss_pred             CHHHHHHHHHHcCCcEEecccccccccceecCCCcCCCCCccCcccCCeEEEEEeCCCCcCCCCCCceEEEEECCchhcc
Confidence            9988 556667799999999999998776665554455678999999999999998889999999999999999999999


Q ss_pred             ccCCchhhhhccC---CCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccce
Q 006530          483 YFKNPSATKQALD---EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ  559 (641)
Q Consensus       483 Y~~~~~~~~~~~~---~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~  559 (641)
                      |+++++.+.+.|.   .++||+|||+|++++          +|.+++.||+||+|++ +|++|+|.+||+++.++|+|.+
T Consensus       398 Y~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~----------~g~l~~~GR~~d~i~~-~G~~v~~~eIE~~i~~~~~v~~  466 (546)
T PRK08314        398 YWNRPEATAEAFIEIDGKRFFRTGDLGRMDE----------EGYFFITDRLKRMINA-SGFKVWPAEVENLLYKHPAIQE  466 (546)
T ss_pred             ccCChhHhhhhhhhcCCCceEecCCEEEEcC----------CCcEEEEecchhhEEe-CCEEECHHHHHHHHHhCcchhe
Confidence            9999998888773   246999999999999          8999999999999997 9999999999999999999999


Q ss_pred             EEEEecCCC----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCC
Q 006530          560 IVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN  635 (641)
Q Consensus       560 ~~v~g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~  635 (641)
                      ++|++.+++    .+.++|+++.+.              ....+.++++++++++|+.|+     .|++|+++++.|.+.
T Consensus       467 ~~v~~~~~~~~~~~~~a~v~~~~~~--------------~~~~~~~~l~~~~~~~l~~~~-----~P~~~~~v~~iP~t~  527 (546)
T PRK08314        467 ACVIATPDPRRGETVKAVVVLRPEA--------------RGKTTEEEIIAWAREHMAAYK-----YPRIVEFVDSLPKSG  527 (546)
T ss_pred             EEEEeCCCcccCceeEEEEEECCCC--------------CCCCCHHHHHHHHHHhcccCC-----CCcEEEEecCCCCCC
Confidence            999997654    577888876531              012456899999999999998     888899999999999


Q ss_pred             CCccc
Q 006530          636 FLCLA  640 (641)
Q Consensus       636 ~~~l~  640 (641)
                      +||+.
T Consensus       528 ~GKv~  532 (546)
T PRK08314        528 SGKIL  532 (546)
T ss_pred             cccee
Confidence            99974

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=8.9e-59  Score=517.08  Aligned_cols=483  Identities=24%  Similarity=0.361  Sum_probs=391.7

Q ss_pred             HHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEE
Q 006530           24 FRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINV  103 (641)
Q Consensus        24 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v  103 (641)
                      +.+++.+++.+.|+++|+++.+. .+++||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus        25 ~~~~l~~~~~~~~~~~a~~~~~~-~~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~G~~~v  103 (537)
T PLN02246         25 LHDYCFERLSEFSDRPCLIDGAT-GRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTT  103 (537)
T ss_pred             HHHHHHHHHHhCCCCeEEEecCC-CceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHHcCEEEe
Confidence            55666666777899999876532 25799999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhh
Q 006530          104 VRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRES  183 (641)
Q Consensus       104 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (641)
                      |+++..+.+++..+++.++++++++++ .....+.+.... ..+ .++.+++..          ....++.++.......
T Consensus       104 ~l~~~~~~~~l~~~l~~~~~~~li~~~-~~~~~~~~~~~~-~~~-~~i~~~~~~----------~~~~~~~~~~~~~~~~  170 (537)
T PLN02246        104 TANPFYTPAEIAKQAKASGAKLIITQS-CYVDKLKGLAED-DGV-TVVTIDDPP----------EGCLHFSELTQADENE  170 (537)
T ss_pred             cCCCCCCHHHHHHHHHhcCCcEEEEcc-chHHHHHHHhhc-CCc-eEEEeCCCC----------CCceeHHHHhcCCCCC
Confidence            999999999999999999999999985 444544443321 122 233332211          1124455544321100


Q ss_pred             hcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhh----hcCCCCCCEEEEECChhhHH
Q 006530          184 RKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD----IVPAENGDKFLSMLPPWHVY  259 (641)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~~~~  259 (641)
                                   .+.....++++++++|||||||.||+|.++|++++..+.....    .+.+.++|+++..+|++|++
T Consensus       171 -------------~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~  237 (537)
T PLN02246        171 -------------LPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIY  237 (537)
T ss_pred             -------------CCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHH
Confidence                         1123356789999999999999999999999999887765433    46688999999999999999


Q ss_pred             HHHH-hHhhhhcCeeEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHH
Q 006530          260 ERAC-GYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTA  335 (641)
Q Consensus       260 g~~~-~~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (641)
                      ++.. .+.++..|+++++.   ++..+++.++++++|++..+|.++..+.+.....                        
T Consensus       238 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~------------------------  293 (537)
T PLN02246        238 SLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVE------------------------  293 (537)
T ss_pred             HHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCcccc------------------------
Confidence            9865 45668999999985   4778999999999999999999998775421110                        


Q ss_pred             HHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhHH-HHHHHc
Q 006530          336 FKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAI  414 (641)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l~-~~~~~~  414 (641)
                                                                         ...+.++|.+++||+++++++. .+.+.+
T Consensus       294 ---------------------------------------------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~  322 (537)
T PLN02246        294 ---------------------------------------------------KYDLSSIRMVLSGAAPLGKELEDAFRAKL  322 (537)
T ss_pred             ---------------------------------------------------ccCccceeEEEEecCcCCHHHHHHHHHHc
Confidence                                                               0123345999999999999884 455556


Q ss_pred             -CCeeeeccccccccCeeeecCC-----CCCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCch
Q 006530          415 -GVKVQVGYGLTESSPVIAARRP-----TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPS  488 (641)
Q Consensus       415 -~~~v~~~yG~tE~~~~~~~~~~-----~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~  488 (641)
                       +..+++.||+||++.+++.+..     ....++++|+|+++++++|+|++++.+++.|+.|||+++|+.++.||+++++
T Consensus       323 ~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~  402 (537)
T PLN02246        323 PNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPE  402 (537)
T ss_pred             CCCeEeccccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcCCCCCceEEEEECCchhccccCCch
Confidence             6789999999999866543321     1234578999999999999998889999999999999999999999999999


Q ss_pred             hhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC
Q 006530          489 ATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR  568 (641)
Q Consensus       489 ~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~  568 (641)
                      .+...|+.++||+|||+|++++          +|.+++.||.+|+|+. +|++|+|.+||+.+.+||+|.+++|++.+++
T Consensus       403 ~~~~~~~~~~~~~TGD~~~~~~----------~g~l~~~GR~dd~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~  471 (537)
T PLN02246        403 ATANTIDKDGWLHTGDIGYIDD----------DDELFIVDRLKELIKY-KGFQVAPAELEALLISHPSIADAAVVPMKDE  471 (537)
T ss_pred             hhhhcccCCCCeeecceEEEeC----------CCeEEEEecccceEEE-CCEEECcHHHHHHHHhCCCeeEEEEEcccCc
Confidence            9999998899999999999999          8999999999999997 8999999999999999999999999997654


Q ss_pred             ----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          569 ----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       569 ----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                          .++++|++.++                ...+.++++++++++++.|+     .|++|.++++.|.+.+||+.
T Consensus       472 ~~~~~~~~~v~~~~~----------------~~~~~~~l~~~l~~~l~~~~-----~p~~i~~~~~~P~t~~GKi~  526 (537)
T PLN02246        472 VAGEVPVAFVVRSNG----------------SEITEDEIKQFVAKQVVFYK-----RIHKVFFVDSIPKAPSGKIL  526 (537)
T ss_pred             cCCceeEEEEEeCCC----------------CCCCHHHHHHHHHhhCcCcc-----ccceEEEeccCCCCCcchhh
Confidence                45677776532                24567899999999999998     77889999999999999973

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-58  Score=511.15  Aligned_cols=472  Identities=23%  Similarity=0.330  Sum_probs=386.8

Q ss_pred             hHHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCChhHHHHHHHHHhcCCE
Q 006530           23 GFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRV-IGVKPEEKLSLFSDNSCRWLVADQGMLATGAI  101 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~  101 (641)
                      .+..+.+..++.+|+++|++.++   +++||+||.++++++|+.|.+ .|+++||+|+++++|+++++++++||+++|++
T Consensus         3 ~~~~~~~~~a~~~p~~~a~~~~~---~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~   79 (496)
T PRK06839          3 GIAYWIEKRAYLHPDRIAIITEE---EEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECI   79 (496)
T ss_pred             cHHHHHHHHHHHCCCCeEEEECC---ceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcE
Confidence            45667777778889999988765   559999999999999999985 79999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhh
Q 006530          102 NVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGR  181 (641)
Q Consensus       102 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (641)
                      ++|+++..+.+++..+++.++++.+++++ .....+.+..... ....++.+                 .+++++.....
T Consensus        80 ~~~~~~~~~~~~~~~~l~~~~~~~i~~~~-~~~~~~~~~~~~~-~~~~~~~~-----------------~~~~~~~~~~~  140 (496)
T PRK06839         80 AVPLNIRLTENELIFQLKDSGTTVLFVEK-TFQNMALSMQKVS-YVQRVISI-----------------TSLKEIEDRKI  140 (496)
T ss_pred             EEecCcccCHHHHHHHHHhcCceEEEEcH-HHHHHHHHhhhcc-CcceEEEe-----------------cchHhhhccCC
Confidence            99999999999999999999999999985 4444433322211 11222221                 12222221110


Q ss_pred             hhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHH
Q 006530          182 ESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYER  261 (641)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~  261 (641)
                                     .......++++++++|||||||.||+|.++|+++..........+++.++|+++..+|++|..++
T Consensus       141 ---------------~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~  205 (496)
T PRK06839        141 ---------------DNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGI  205 (496)
T ss_pred             ---------------CCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhH
Confidence                           11223456899999999999999999999999998776666667788899999999999999988


Q ss_pred             HH-hHhhhhcCeeEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHH
Q 006530          262 AC-GYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFK  337 (641)
Q Consensus       262 ~~-~~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (641)
                      .. .+.++..|+++++.   ++..+++.++++++|++.++|.++..+.......                          
T Consensus       206 ~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--------------------------  259 (496)
T PRK06839        206 GLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFE--------------------------  259 (496)
T ss_pred             HHHHHHHHhcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccc--------------------------
Confidence            65 45668999998874   5788999999999999999999998886532110                          


Q ss_pred             hHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhHHHHHHHcCCe
Q 006530          338 RIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVK  417 (641)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l~~~~~~~~~~  417 (641)
                                                                       ...+.++|.+++||+++++.+.+.+...|.+
T Consensus       260 -------------------------------------------------~~~~~~lr~~~~gG~~~~~~~~~~~~~~g~~  290 (496)
T PRK06839        260 -------------------------------------------------TTNLQSVRWFYNGGAPCPEELMREFIDRGFL  290 (496)
T ss_pred             -------------------------------------------------cCCCcccceEEECCCCCCHHHHHHHHHhCCe
Confidence                                                             0233455999999999999985555556999


Q ss_pred             eeeccccccccCeeeecCCC--CCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccC
Q 006530          418 VQVGYGLTESSPVIAARRPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD  495 (641)
Q Consensus       418 v~~~yG~tE~~~~~~~~~~~--~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~  495 (641)
                      +.+.||+||++.........  ....+++|.|+++++++|+|++ +..++.|+.|||+|+|+.++.||+++++.+...+ 
T Consensus       291 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-  368 (496)
T PRK06839        291 FGQGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDEN-KNKVEVGEVGELLIRGPNVMKEYWNRPDATEETI-  368 (496)
T ss_pred             eEeeccCCCCCcceEecccccccccCCCCcccCCCceEEEECCC-cCCCCCCCceEEEEECCCcchhhcCChHHHHHHH-
Confidence            99999999998655433322  2456789999999999999965 5569999999999999999999999999988877 


Q ss_pred             CCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCCc----eE
Q 006530          496 EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PG  571 (641)
Q Consensus       496 ~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~~----~~  571 (641)
                      .+|||+|||++++++          +|.+++.||.+|+|+. +|++|+|.+||+.|.++|+|.+++|++.+++.    ++
T Consensus       369 ~~g~~~TGDl~~~~~----------~g~~~~~GR~~d~i~~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~  437 (496)
T PRK06839        369 QDGWLCTGDLARVDE----------DGFVYIVGRKKEMIIS-GGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPI  437 (496)
T ss_pred             cCCCeeecceEEEcC----------CCcEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEE
Confidence            589999999999999          8999999999999996 99999999999999999999999999987654    66


Q ss_pred             EEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          572 AIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       572 a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                      ++|+++++                ...+.+++++++++.|+.|+     +|.+|+++++.|.+.+||+.
T Consensus       438 ~~v~~~~~----------------~~~~~~~l~~~~~~~l~~~~-----~P~~~~~v~~~P~t~~GKi~  485 (496)
T PRK06839        438 AFIVKKSS----------------SVLIEKDVIEHCRLFLAKYK-----IPKEIVFLKELPKNATGKIQ  485 (496)
T ss_pred             EEEEECCC----------------CCCCHHHHHHHHHhhCcCCC-----CCcEEEEeccCCCCcccccc
Confidence            88887643                34567899999999999988     78889999999999999973

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.1e-58  Score=516.59  Aligned_cols=492  Identities=24%  Similarity=0.363  Sum_probs=384.4

Q ss_pred             HHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q 006530           24 FRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRV-IGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN  102 (641)
Q Consensus        24 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~  102 (641)
                      +....++.+..+|+++|+++.+   +++||+||.++++++|+.|.+ .|+++||+|+++++|++++++++|||+++|+++
T Consensus        26 ~~~~l~~~a~~~p~~~al~~~~---~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~~  102 (562)
T PRK05677         26 IQAVLKQSCQRFADKPAFSNLG---KTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIV  102 (562)
T ss_pred             HHHHHHHHHHhCCCCeeEEECC---ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence            3445556666788999988765   459999999999999999997 699999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCC-C--CC---C----------CccC
Q 006530          103 VVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKS-S--VA---P----------DIVE  166 (641)
Q Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~--~~---~----------~~~~  166 (641)
                      +|++|..+.+++.+++++++++.+|+++ .....+.+.... ..++.++....... .  ..   .          ....
T Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~ii~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (562)
T PRK05677        103 VNTNPLYTAREMEHQFNDSGAKALVCLA-NMAHLAEKVLPK-TGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAYH  180 (562)
T ss_pred             eecCCCCCHHHHHHHHhccCceEEEEec-chhhhHHHhhhc-cCcceeEEecccccccchhhhhcccchhhccccccccC
Confidence            9999999999999999999999999975 343333333222 22333333211000 0  00   0          0000


Q ss_pred             CCCcccHHHHHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcC--CC
Q 006530          167 EIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP--AE  244 (641)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~--~~  244 (641)
                      ......+.+.+.......            .......++++++++|||||||.||||.++|+++...+......+.  ..
T Consensus       181 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~  248 (562)
T PRK05677        181 LPQAVKFNDALAKGAGQP------------VTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLN  248 (562)
T ss_pred             CcccccHHHHHhcCCCCC------------CCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCC
Confidence            001223344333221110            1123346799999999999999999999999999877665554443  33


Q ss_pred             C-CCEEEEECChhhHHHHHH-hHhhhhcCeeEEec----chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHH
Q 006530          245 N-GDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAA  318 (641)
Q Consensus       245 ~-~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~  318 (641)
                      . .+.+++.+|++|.+++.. .+.++..|++.++.    ++..+++.++++++|+++++|+++..+.......       
T Consensus       249 ~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-------  321 (562)
T PRK05677        249 EGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFR-------  321 (562)
T ss_pred             CCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccc-------
Confidence            3 468899999999999865 44456777766553    4677899999999999999999998775521100       


Q ss_pred             HHHHHHHHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEe
Q 006530          319 RRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVS  398 (641)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~  398 (641)
                                                                                          ...+.++|.+++
T Consensus       322 --------------------------------------------------------------------~~~~~~lr~v~~  333 (562)
T PRK05677        322 --------------------------------------------------------------------KLDFSALKLTLS  333 (562)
T ss_pred             --------------------------------------------------------------------cCChhhceEEEE
Confidence                                                                                012234599999


Q ss_pred             ecCCCChhH-HHHHHHcCCeeeeccccccccCeeeecCCCCCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecC
Q 006530          399 GGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS  477 (641)
Q Consensus       399 gG~~l~~~l-~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~  477 (641)
                      ||+++++.+ +.+.+.++.++++.||+||++.+..........++++|.|+++++++|+|+ ++..++.|+.|||+++|+
T Consensus       334 gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~-~~~~~~~g~~Gel~v~g~  412 (562)
T PRK05677        334 GGMALQLATAERWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPSTLCKVIDD-DGNELPLGEVGELCVKGP  412 (562)
T ss_pred             cCccCCHHHHHHHHHHcCCCeeccCCccccCcceeecCccCCCCCccCccCCCCEEEEECC-CCCCCCCCCCeEEEEecC
Confidence            999999988 445555799999999999998777665554456678999999999999995 578899999999999999


Q ss_pred             cccccccCCchhhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCccc
Q 006530          478 QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLI  557 (641)
Q Consensus       478 ~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V  557 (641)
                      .++.||+++++.+.+.|..+|||+|||+|++++          +|.+++.||++|+|++ +|++|+|.+||+.|.+||+|
T Consensus       413 ~~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~~----------~G~l~i~GR~~d~i~~-~G~~i~p~eiE~~l~~~~~v  481 (562)
T PRK05677        413 QVMKGYWQRPEATDEILDSDGWLKTGDIALIQE----------DGYMRIVDRKKDMILV-SGFNVYPNELEDVLAALPGV  481 (562)
T ss_pred             ccchhhcCCchhhhhccCCCCcccccceEEECC----------CCcEEEEecCcCeEEe-CCEEECHHHHHHHHHhCCCc
Confidence            999999999999999998899999999999999          9999999999999997 89999999999999999999


Q ss_pred             ceEEEEecCCC----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCC
Q 006530          558 RQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFT  633 (641)
Q Consensus       558 ~~~~v~g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~  633 (641)
                      .+++|++.+++    .+.++|++.++                ...+.++++++++++|+.|+     .|++|+++++.|.
T Consensus       482 ~~~~v~g~~~~~~g~~~~~~v~~~~~----------------~~~~~~~l~~~~~~~l~~~~-----~P~~i~~v~~iP~  540 (562)
T PRK05677        482 LQCAAIGVPDEKSGEAIKVFVVVKPG----------------ETLTKEQVMEHMRANLTGYK-----VPKAVEFRDELPT  540 (562)
T ss_pred             cEEEEEeccCccCCceEEEEEEeCCC----------------CCCCHHHHHHHHHHhhhhcc-----CCcEEEEeccCCC
Confidence            99999998764    45566665432                34577899999999999999     7788999999999


Q ss_pred             CCCCccc
Q 006530          634 VNFLCLA  640 (641)
Q Consensus       634 ~~~~~l~  640 (641)
                      +.+||+.
T Consensus       541 t~sGKi~  547 (562)
T PRK05677        541 TNVGKIL  547 (562)
T ss_pred             CCccccc
Confidence            9999973

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.6e-58  Score=509.55  Aligned_cols=487  Identities=26%  Similarity=0.412  Sum_probs=403.3

Q ss_pred             HHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEE
Q 006530           24 FRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINV  103 (641)
Q Consensus        24 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v  103 (641)
                      +...+++.+...|+++|+...+.   ++||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus         7 i~~~l~~~~~~~~~~~a~~~~~~---~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~~~v   83 (513)
T PRK07656          7 LPELLARAARRFGDKEAYVFGDQ---RLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVV   83 (513)
T ss_pred             HHHHHHHHHHHCCCCeEEEeCCC---ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEE
Confidence            34445555667888988888664   499999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhh
Q 006530          104 VRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRES  183 (641)
Q Consensus       104 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (641)
                      |+++..+.+.+..+++.++++++++++ ...............++.++..........     .....+|+++.......
T Consensus        84 ~l~~~~~~~~~~~~l~~~~~~~ii~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  157 (513)
T PRK07656         84 PLNTRYTADEAAYILARGDAKALFVLG-LFLGVDYSATTRLPALEHVVICETEEDDPH-----TEKMKTFTDFLAAGDPA  157 (513)
T ss_pred             ecCcccCHHHHHHHHhhcCceEEEEch-hhHHHHHHHHhccCCccEEEEEcCcccccC-----ccccccHHHHHhcCCCC
Confidence            999999999999999999999999986 444444444444555555555432221100     01235667765533210


Q ss_pred             hcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHHH
Q 006530          184 RKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC  263 (641)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~  263 (641)
                                   .......++++++++|||||||.||+|.++|.++...+......+++.+++++++.+|++|.+++..
T Consensus       158 -------------~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (513)
T PRK07656        158 -------------ERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKA  224 (513)
T ss_pred             -------------CCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHH
Confidence                         1223457889999999999999999999999999999888888889999999999999999999876


Q ss_pred             -hHhhhhcCeeEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhH
Q 006530          264 -GYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRI  339 (641)
Q Consensus       264 -~~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (641)
                       .+.++..|+++++.   ++..+++.++++++|++.++|+++..+.+......                           
T Consensus       225 ~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~---------------------------  277 (513)
T PRK07656        225 GVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSA---------------------------  277 (513)
T ss_pred             HHHHHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCC---------------------------
Confidence             56679999998874   57889999999999999999999998876322110                           


Q ss_pred             hcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHcCC-e
Q 006530          340 YEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGV-K  417 (641)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~~~-~  417 (641)
                                                                      ..+.++|.+++||++++..+ +.+.+.++. .
T Consensus       278 ------------------------------------------------~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~  309 (513)
T PRK07656        278 ------------------------------------------------EDLSSLRLAVTGAASMPVALLERFESELGVDI  309 (513)
T ss_pred             ------------------------------------------------CCccceeeEEecCCCCCHHHHHHHHHHcCCCc
Confidence                                                            13345599999999999987 556667788 8


Q ss_pred             eeeccccccccCeeeecCCCCC-c--ccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhcc
Q 006530          418 VQVGYGLTESSPVIAARRPTCN-V--LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL  494 (641)
Q Consensus       418 v~~~yG~tE~~~~~~~~~~~~~-~--~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~  494 (641)
                      +++.||+||++++...+..... .  ++++|.|+++++++|+| +++.+++.|+.|||+++|+.++.||++++..+...+
T Consensus       310 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~  388 (513)
T PRK07656        310 VLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVN-ELGEEVPVGEVGELLVRGPNVMKGYYDDPEATAAAI  388 (513)
T ss_pred             eEeEEccccCCCceeecCccccccccCCCccccCCCcEEEEEC-CCCCCCCCCCceEEEEEcchhhhhhcCCHHHHhhhh
Confidence            9999999999877776654332 2  67899999999999999 458899999999999999999999999999998888


Q ss_pred             CCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC----ce
Q 006530          495 DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RP  570 (641)
Q Consensus       495 ~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----~~  570 (641)
                      ..+|||+|||+|++++          +|.++++||.+|+|++ +|.+++|.+||+.|.++|+|.+++|++.+++    .+
T Consensus       389 ~~~~~~~tGDl~~~~~----------~g~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~  457 (513)
T PRK07656        389 DADGWLHTGDLGRLDE----------EGYLYIVDRKKDMFIV-GGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVG  457 (513)
T ss_pred             ccCCceeccceEEEcC----------CeeEEEEecccceEEe-CCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceE
Confidence            7799999999999998          8999999999999997 9999999999999999999999999997654    35


Q ss_pred             EEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          571 GAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       571 ~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                      .++|+++.+                ...+.++++++++++|+.++     .|..|+++++.|.+.+||+.
T Consensus       458 ~~~v~~~~~----------------~~~~~~~l~~~~~~~l~~~~-----~p~~i~~v~~iP~t~~gK~~  506 (513)
T PRK07656        458 KAYVVLKPG----------------AELTEEELIAYCREHLAKYK-----VPRSIEFLDELPKNATGKVL  506 (513)
T ss_pred             EEEEEECCC----------------CCCCHHHHHHHHHhhccccc-----CCCEEEEecCCCCCCcccee
Confidence            677776532                34567889999999999998     77889999999999999974

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=2.2e-58  Score=513.87  Aligned_cols=487  Identities=20%  Similarity=0.229  Sum_probs=392.9

Q ss_pred             hhhhhhHHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHh
Q 006530           18 DYHRHGFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLA   97 (641)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~   97 (641)
                      +.....+.+++++.++.+|+++++...+.   ++||+||.+++.++|+.|.+.|+++|++|+++++|+++++++++||++
T Consensus        17 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~---~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~   93 (542)
T PRK06155         17 PPSERTLPAMLARQAERYPDRPLLVFGGT---RWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAW   93 (542)
T ss_pred             CccccCHHHHHHHHHHHCCCCeEEEeCCc---cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHH
Confidence            33444566788888888999999887664   499999999999999999999999999999999999999999999999


Q ss_pred             cCCEEEecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHH
Q 006530           98 TGAINVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEII  177 (641)
Q Consensus        98 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (641)
                      +|++++|+++.++.+++..+++.++++.++++. +....+.+.......++.++.++.......        ...+....
T Consensus        94 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~  164 (542)
T PRK06155         94 LGAIAVPINTALRGPQLEHILRNSGARLLVVEA-ALLAALEAADPGDLPLPAVWLLDAPASVSV--------PAGWSTAP  164 (542)
T ss_pred             hCCEEEEeccccCHHHHHHHHHhcCceEEEECh-hhHHHHHHhcccccCcceEEEecCcccccc--------ccccchhh
Confidence            999999999999999999999999999999985 555555443333323444444432211000        01111100


Q ss_pred             HhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhh
Q 006530          178 DLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH  257 (641)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~  257 (641)
                      . .... .          ........++++++++|||||||.||+|.++|+++..........+++.+++++++.+|++|
T Consensus       165 ~-~~~~-~----------~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~  232 (542)
T PRK06155        165 L-PPLD-A----------PAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFH  232 (542)
T ss_pred             h-cccC-C----------CCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHH
Confidence            0 0000 0          01123346789999999999999999999999999888777778889999999999999999


Q ss_pred             HHHHHHhHhhhhcCeeEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHH
Q 006530          258 VYERACGYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYT  334 (641)
Q Consensus       258 ~~g~~~~~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (641)
                      ..++...+.++..|+++++.   ++..++..++++++|++..+|+++..+.+.....                       
T Consensus       233 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~-----------------------  289 (542)
T PRK06155        233 TNALNAFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARE-----------------------  289 (542)
T ss_pred             HHHHHHHHHHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCcc-----------------------
Confidence            99998888889999999885   4789999999999999999999887775432110                       


Q ss_pred             HHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHH
Q 006530          335 AFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEA  413 (641)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~  413 (641)
                                                                          ....+++|.++.||  +++.+ ..+.+.
T Consensus       290 ----------------------------------------------------~~~~~~l~~~~~g~--~~~~~~~~~~~~  315 (542)
T PRK06155        290 ----------------------------------------------------SDRAHRVRVALGPG--VPAALHAAFRER  315 (542)
T ss_pred             ----------------------------------------------------ccccCceEEEEEcC--CCHHHHHHHHHH
Confidence                                                                01223346666554  45554 667777


Q ss_pred             cCCeeeeccccccccCeeeecCCCCCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecC---cccccccCCchhh
Q 006530          414 IGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS---QVMQGYFKNPSAT  490 (641)
Q Consensus       414 ~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~---~~~~gY~~~~~~~  490 (641)
                      ++.++++.||+||++..+..+.. ...++++|.+.++++++|+| +++.+++.|+.|||+++|+   .++.||+++++.+
T Consensus       316 ~~~~v~~~YG~tE~~~~~~~~~~-~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~  393 (542)
T PRK06155        316 FGVDLLDGYGSTETNFVIAVTHG-SQRPGSMGRLAPGFEARVVD-EHDQELPDGEPGELLLRADEPFAFATGYFGMPEKT  393 (542)
T ss_pred             cCCCEEeeecccccCccccCCCC-CCCCCCcCccCCCceEEEEC-CCCCCCCCCCceEEEEecCCccccchhhcCCHHHH
Confidence            89999999999999877665432 34567899999999999999 4588999999999999998   6999999999999


Q ss_pred             hhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCC---
Q 006530          491 KQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ---  567 (641)
Q Consensus       491 ~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~---  567 (641)
                      .+.| .++||+|||+|++++          ||.+++.||.+|+|+. +|++|+|.+||+++.+||+|.+++|++.++   
T Consensus       394 ~~~~-~~~~~~TGD~~~~~~----------dG~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~  461 (542)
T PRK06155        394 VEAW-RNLWFHTGDRVVRDA----------DGWFRFVDRIKDAIRR-RGENISSFEVEQVLLSHPAVAAAAVFPVPSELG  461 (542)
T ss_pred             HHhh-cCCcEeccceEEEcC----------CceEEEEecCCCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeeccccc
Confidence            8888 589999999999999          8999999999999996 999999999999999999999999999765   


Q ss_pred             -CceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          568 -RRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       568 -~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                       +.+.+++++..+                ...+..+++++++++|+.|+     .|..|.++++.|.+.+||+.
T Consensus       462 ~~~~~~~v~~~~~----------------~~~~~~~~~~~~~~~l~~~~-----~P~~i~~~~~iP~t~~GKi~  514 (542)
T PRK06155        462 EDEVMAAVVLRDG----------------TALEPVALVRHCEPRLAYFA-----VPRYVEFVAALPKTENGKVQ  514 (542)
T ss_pred             CceEEEEEEECCC----------------CCCCHHHHHHHHHhhCcCcc-----CCcEEEEeccCCCCccccee
Confidence             356677776532                34677899999999999998     77789999999999999973

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2e-58  Score=523.46  Aligned_cols=480  Identities=18%  Similarity=0.228  Sum_probs=369.6

Q ss_pred             HHHHHhhhhhhhhhhhhhccc------CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHh
Q 006530           24 FRVFTRNCVDAVATRIRISRR------NHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLA   97 (641)
Q Consensus        24 ~~~~~~~~~~~~~~~~a~~~~------~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~   97 (641)
                      +..++++++...|+++|++..      ++.++++||+||.++++++|++|.+. +++||+|+++++|++++++++|||++
T Consensus        23 l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~lA~~~  101 (631)
T PRK07769         23 LVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAFFGALY  101 (631)
T ss_pred             HHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHHHHHHH
Confidence            344455556677888887652      34568899999999999999999987 89999999999999999999999999


Q ss_pred             cCCEEEec-CCCCC--HHHHHHHHHhcCceEEEecChhhHHHHHHhhccccc--ccEEEEEeCCCCCCCCCccCCCCccc
Q 006530           98 TGAINVVR-GSRSS--SEELLHIYNHSESVALAVENPEFFNRIAETLCSKAA--MRFIILLWGKKSSVAPDIVEEIPVFS  172 (641)
Q Consensus        98 ~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~  172 (641)
                      +|++++|+ ++..+  .+++.+++++++++++++++ .....+.+.....+.  ...++......               
T Consensus       102 ~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  165 (631)
T PRK07769        102 AGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTT-DSAEGVRKFFRARPAKERPRVIAVDAVP---------------  165 (631)
T ss_pred             cCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEECh-HHHHHHHHHHhhccccccceEEEccccc---------------
Confidence            99999999 45554  68899999999999999985 444444333222221  11222211000               


Q ss_pred             HHHHHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEE
Q 006530          173 YDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSM  252 (641)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~  252 (641)
                        +..  .. .             .......++++++|+|||||||.||||++||+++...+......+++.++++++.+
T Consensus       166 --~~~--~~-~-------------~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~  227 (631)
T PRK07769        166 --DEV--GA-T-------------WVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSW  227 (631)
T ss_pred             --ccc--cc-c-------------cCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEe
Confidence              000  00 0             01123467899999999999999999999999999888888888889999999999


Q ss_pred             CChhhHHHHHHhHhhhhcCeeEEec-------chHHHHHHHhhhCC---eEEEeCcHHHHHHHHHHHHHHhhccHHHHHH
Q 006530          253 LPPWHVYERACGYFIFSRGIELMYT-------AVRNLKDDLQRYQP---HYMISVPLVYETLYSGIQKQIFTSSAARRVV  322 (641)
Q Consensus       253 ~pl~~~~g~~~~~~~l~~G~~~v~~-------~~~~~~~~i~~~~~---t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~  322 (641)
                      +|++|++|+...+.++..|+++++.       ++..+++.+.++++   +++..+|.++..+.........         
T Consensus       228 ~Pl~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~---------  298 (631)
T PRK07769        228 LPFFHDMGLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKD---------  298 (631)
T ss_pred             CCCcCchhhHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchh---------
Confidence            9999999998877788889988875       34556788888876   7889999988766432000000         


Q ss_pred             HHHHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCC
Q 006530          323 ARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGS  402 (641)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~  402 (641)
                                                                                   ..-..+++++|.+++||++
T Consensus       299 -------------------------------------------------------------~~~~~~l~~lr~~~~gg~~  317 (631)
T PRK07769        299 -------------------------------------------------------------GEPPLDLSNVKGLLNGSEP  317 (631)
T ss_pred             -------------------------------------------------------------cccCcchhheeeEEeccCC
Confidence                                                                         0000234556999999999


Q ss_pred             CChhH-HHHHHHc---C---CeeeeccccccccCeeeecCCCC---------------------------CcccccccCc
Q 006530          403 LPMHI-DLFYEAI---G---VKVQVGYGLTESSPVIAARRPTC---------------------------NVLGSVGHPI  448 (641)
Q Consensus       403 l~~~l-~~~~~~~---~---~~v~~~yG~tE~~~~~~~~~~~~---------------------------~~~~~~G~~~  448 (641)
                      ++..+ +++.+.+   |   ..+++.||+||++.+++..+...                           ....++|.|.
T Consensus       318 l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~  397 (631)
T PRK07769        318 VSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVG  397 (631)
T ss_pred             CCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcC
Confidence            99987 5566655   3   35999999999876655433211                           0124789999


Q ss_pred             CCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccC-----------------CCCccccCceeEEcCC
Q 006530          449 NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD-----------------EDGWLNTGDIGWIAPH  511 (641)
Q Consensus       449 ~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~-----------------~~g~~~TGDl~~~~~~  511 (641)
                      ++++++|+|++++.+++.|+.|||+++||+++.||+++++.+.+.|.                 .+|||+|||+|+++  
T Consensus       398 ~~~~~~ivd~~~g~~~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~--  475 (631)
T PRK07769        398 VSEWAVIVDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF--  475 (631)
T ss_pred             CCcEEEEEcCCCCcCCCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE--
Confidence            99999999988889999999999999999999999999999988884                 24899999999984  


Q ss_pred             CCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhc-Ccccce--EEEEecCC---------------------
Q 006530          512 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR-SSLIRQ--IVVIGQDQ---------------------  567 (641)
Q Consensus       512 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~-~p~V~~--~~v~g~~~---------------------  567 (641)
                               ||+|+|+||+||+|++ +|++|+|.|||+.|.+ ||.|.+  ++|++.++                     
T Consensus       476 ---------dG~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~  545 (631)
T PRK07769        476 ---------DGELYITGRVKDLVII-DGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPED  545 (631)
T ss_pred             ---------CCEEEEEcccccEEEE-CCeeeCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCC
Confidence                     5999999999999997 9999999999999996 899998  99998877                     


Q ss_pred             --CceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHh-HhccCCCccccEEEec--CCCCCCCCcc
Q 006530          568 --RRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRK-WTSKCSFQIGPIHVVD--EPFTVNFLCL  639 (641)
Q Consensus       568 --~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-~~~~~~~~~~~i~~~~--~~~~~~~~~l  639 (641)
                        +.+.++|++.++.               ...+.++|.++++++|.. |+    ..++++.+++  +.|.+.+||+
T Consensus       546 ~ge~~~a~v~~~~~~---------------~~~~~~~l~~~~~~~l~~~~~----~~p~~~~~v~~~~lP~t~~GKi  603 (631)
T PRK07769        546 TSEQLVIVAERAPGA---------------HKLDPQPIADDIRAAIAVRHG----VTVRDVLLVPAGSIPRTSSGKI  603 (631)
T ss_pred             CCccEEEEEEecCcc---------------ccccHHHHHHHHHHHHHHHcC----CCccEEEEECCCccccCCCcHH
Confidence              2356777765431               235678999999999996 45    1367788887  6999999996

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-58  Score=531.06  Aligned_cols=460  Identities=20%  Similarity=0.279  Sum_probs=369.3

Q ss_pred             HHHhhhhhh--hhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEE
Q 006530           26 VFTRNCVDA--VATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINV  103 (641)
Q Consensus        26 ~~~~~~~~~--~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v  103 (641)
                      .++++++..  +|+++|+...+    .+||+||.++++++|++|.+.|+++||+|+|+++|+++++++++||+++|++++
T Consensus         8 ~~~~~~a~~~~~pd~~a~~~~~----~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~aG~~~v   83 (705)
T PRK06060          8 GLLAEQASEAGWYDRPAFYAAD----VVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAF   83 (705)
T ss_pred             HHHHHHHhhccCCCceEEEecC----ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEE
Confidence            334444444  68999887532    499999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhh
Q 006530          104 VRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRES  183 (641)
Q Consensus       104 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (641)
                      |++|.++.+++.+++++++++++|+++ .....+..    .   .                     .....+++......
T Consensus        84 pi~p~~~~~~l~~~l~~~~~~~vi~~~-~~~~~~~~----~---~---------------------~~~~~~~~~~~~~~  134 (705)
T PRK06060         84 LANPELHRDDHALAARNTEPALVVTSD-ALRDRFQP----S---R---------------------VAEAAELMSEAARV  134 (705)
T ss_pred             ecCCCCCHHHHHHHHhcCCCcEEEEch-HHhhhhcc----c---c---------------------cchhhhhhhhcccc
Confidence            999999999999999999999999985 33222210    0   0                     01111111111000


Q ss_pred             hcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHh-hhcCCCCCCEEEEECChhhHHHHH
Q 006530          184 RKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY-DIVPAENGDKFLSMLPPWHVYERA  262 (641)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~-~~~~~~~~d~~l~~~pl~~~~g~~  262 (641)
                      ..           .......++++++++|||||||.||||.++|+++.+.+..+. ..+++.++|++++..|++|.+++.
T Consensus       135 ~~-----------~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~  203 (705)
T PRK06060        135 AP-----------GGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLG  203 (705)
T ss_pred             CC-----------CCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchh
Confidence            00           011234578999999999999999999999999988776653 457788999999999999988875


Q ss_pred             H-hHhhhhcCeeEEec----chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHH
Q 006530          263 C-GYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFK  337 (641)
Q Consensus       263 ~-~~~~l~~G~~~v~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (641)
                      . .+.++..|+++++.    ++..+...+.++++|+++++|+++..+......                           
T Consensus       204 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~---------------------------  256 (705)
T PRK06060        204 NSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSP---------------------------  256 (705)
T ss_pred             HHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhccc---------------------------
Confidence            4 56678999999885    356778889999999999999999887653110                           


Q ss_pred             hHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHc-C
Q 006530          338 RIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-G  415 (641)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~-~  415 (641)
                                                                        ..+.++|.+++||+++++.+ +++.+.+ +
T Consensus       257 --------------------------------------------------~~~~slr~i~~gGe~l~~~~~~~~~~~~~~  286 (705)
T PRK06060        257 --------------------------------------------------DSFRSLRCVVSAGEALELGLAERLMEFFGG  286 (705)
T ss_pred             --------------------------------------------------ccccceeEEEEecCcCCHHHHHHHHHHcCC
Confidence                                                              23345699999999999987 5566666 5


Q ss_pred             CeeeeccccccccCeeeecCCCCCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccC
Q 006530          416 VKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD  495 (641)
Q Consensus       416 ~~v~~~yG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~  495 (641)
                      .++++.||+||++..+..+......++++|+|+++++++|+|+ ++++++.|+.|||+|+|+.++.||+++++.+   +.
T Consensus       287 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~-~g~~~~~g~~GEl~i~g~~v~~GY~~~~~~~---~~  362 (705)
T PRK06060        287 IPILDGIGSTEVGQTFVSNRVDEWRLGTLGRVLPPYEIRVVAP-DGTTAGPGVEGDLWVRGPAIAKGYWNRPDSP---VA  362 (705)
T ss_pred             CceEeeeeccccCceEEeccCCCCCcCcccccCCCcEEEEECC-CCCCCCCCCceEEEEccchhhhhhhCCCccc---cc
Confidence            8999999999998665544444445678999999999999994 5788999999999999999999999998764   33


Q ss_pred             CCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC----ceE
Q 006530          496 EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPG  571 (641)
Q Consensus       496 ~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----~~~  571 (641)
                      .+|||+|||+|++++          ||++++.||+||+|++ +|++|+|.|||+.|.+||+|.+++|++.+++    .+.
T Consensus       363 ~~~~~~TGDl~~~~~----------dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~  431 (705)
T PRK06060        363 NEGWLDTRDRVCIDS----------DGWVTYRCRADDTEVI-GGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQ  431 (705)
T ss_pred             CCCcEECCeeEEECC----------CceEEEecccCceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEE
Confidence            579999999999999          9999999999999998 9999999999999999999999999997653    577


Q ss_pred             EEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCcc
Q 006530          572 AIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  639 (641)
Q Consensus       572 a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l  639 (641)
                      ++|++..+.             ..+.....+++++++++|+.|+     .|.+|+++++.|.+.|||+
T Consensus       432 a~vv~~~~~-------------~~~~~~~~~i~~~l~~~L~~~~-----~P~~i~~v~~iP~t~~GKi  481 (705)
T PRK06060        432 AFLVATSGA-------------TIDGSVMRDLHRGLLNRLSAFK-----VPHRFAVVDRLPRTPNGKL  481 (705)
T ss_pred             EEEEecccc-------------CcChHHHHHHHHHHHHhCCCCc-----CCcEEEEeecCCCCcchhh
Confidence            888875421             0001123578889999999998     7788999999999999997

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-58  Score=514.93  Aligned_cols=486  Identities=20%  Similarity=0.195  Sum_probs=369.6

Q ss_pred             hhhhHHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcC
Q 006530           20 HRHGFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATG   99 (641)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G   99 (641)
                      ++..+.+...+++.++|+++|+...++. +.+||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|
T Consensus        12 ~~~~~~~~l~~~a~~~p~~~a~~~~~~~-~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~G   90 (540)
T PRK05857         12 LPSTVLDRVFEQARQQPEAIALRRCDGT-SALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLG   90 (540)
T ss_pred             CCcchHHHHHHHHhhCCCcEEEeecCCC-ceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence            3334455555666778999988754442 569999999999999999999999999999999999999999999999999


Q ss_pred             CEEEecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHh
Q 006530          100 AINVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDL  179 (641)
Q Consensus       100 ~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (641)
                      ++++|++++++.+++.++++.++++.+++++. ..............+.. +..+.....           ..+.+....
T Consensus        91 ~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~-----------~~~~~~~~~  157 (540)
T PRK05857         91 AIAVMADGNLPIAAIERFCQITDPAAALVAPG-SKMASSAVPEALHSIPV-IAVDIAAVT-----------RESEHSLDA  157 (540)
T ss_pred             eEEEecCccCCHHHHHHHHHhcCCceEEEecc-chhccccccccccccce-eEeeccccc-----------ccccccccc
Confidence            99999999999999999999999999999863 21111111111111221 111111000           000000000


Q ss_pred             hhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhh----hcCCCCCCEEEEECCh
Q 006530          180 GRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD----IVPAENGDKFLSMLPP  255 (641)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~pl  255 (641)
                      .  ..            .......++++++++|||||||.||||.+||+++.++......    .+....+++.+..+|+
T Consensus       158 ~--~~------------~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  223 (540)
T PRK05857        158 A--SL------------AGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPA  223 (540)
T ss_pred             c--cc------------ccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCc
Confidence            0  00            0112346789999999999999999999999999876544321    2345567899999999


Q ss_pred             hhHHHHHHhHhhhhcCeeEEec--chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHH
Q 006530          256 WHVYERACGYFIFSRGIELMYT--AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAY  333 (641)
Q Consensus       256 ~~~~g~~~~~~~l~~G~~~v~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (641)
                      +|..++...+.++..|+++++.  ++..+++.++++++|.++.+|+++..+........                     
T Consensus       224 ~h~~~l~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~---------------------  282 (540)
T PRK05857        224 THIGGLWWILTCLMHGGLCVTGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSAN---------------------  282 (540)
T ss_pred             cccchHHHHHHHhhcceeEEecCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCC---------------------
Confidence            9999988788889999998873  57789999999999999999999988865321110                     


Q ss_pred             HHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhHHHHHHH
Q 006530          334 TAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEA  413 (641)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l~~~~~~  413 (641)
                                                                            ..+.++|.+++||++++....++.+.
T Consensus       283 ------------------------------------------------------~~~~~lr~~~~gG~~~~~~~~~~~~~  308 (540)
T PRK05857        283 ------------------------------------------------------ATVPSLRLVGYGGSRAIAADVRFIEA  308 (540)
T ss_pred             ------------------------------------------------------CcCccceEEEEcCccCCchhHHHHHH
Confidence                                                                  13345599999999998777667777


Q ss_pred             cCCeeeeccccccccCeeeecCCC-----CCcccccccCcCCcEEEEeeCCCCccC-----CCCCCceEEEecCcccccc
Q 006530          414 IGVKVQVGYGLTESSPVIAARRPT-----CNVLGSVGHPINHTEIKIVDAETNEVL-----PAGSKGIVKVRGSQVMQGY  483 (641)
Q Consensus       414 ~~~~v~~~yG~tE~~~~~~~~~~~-----~~~~~~~G~~~~~~~v~i~d~~~~~~~-----~~g~~Gel~v~g~~~~~gY  483 (641)
                      ++.++++.||+||++......+..     ...++++|+|++|++++|++++...++     +.|+.|||+++|+.++.||
T Consensus       309 ~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY  388 (540)
T PRK05857        309 TGVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGY  388 (540)
T ss_pred             hCCeeecccCCCcCCceeeecccccccccccccCCcCcccCCcEEEEECccccCccccccCCCCCcceEEEeCcchhhhh
Confidence            899999999999998654433221     124578999999999999996544433     4578999999999999999


Q ss_pred             cCCchhhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEE
Q 006530          484 FKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVI  563 (641)
Q Consensus       484 ~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~  563 (641)
                      +++++.+.+.| .+|||+|||+|++++          +|.+++.||.+|+|++ +|++|+|.|||++|..||+|.+|+|+
T Consensus       389 ~~~~~~t~~~~-~~g~~~TGDlg~~d~----------~g~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~V~~~~v~  456 (540)
T PRK05857        389 WNNPERTAEVL-IDGWVNTGDLLERRE----------DGFFYIKGRSSEMIIC-GGVNIAPDEVDRIAEGVSGVREAACY  456 (540)
T ss_pred             hCCccchhhhc-CCCceeccceEEEcC----------CceEEEeccccccEec-CCEEECHHHHHHHHHhCCCeeEEEEE
Confidence            99999999888 589999999999999          9999999999999997 99999999999999999999999999


Q ss_pred             ecCCC----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHH----HHHHHhHhccCCCccccEEEecCCCCCC
Q 006530          564 GQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLL----YGELRKWTSKCSFQIGPIHVVDEPFTVN  635 (641)
Q Consensus       564 g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~l~~~~~~~~~~~~~i~~~~~~~~~~  635 (641)
                      +.+++    .++++|+.+.+.               .....+++.+.+    +++++.|+     +|++|.++++.|.+.
T Consensus       457 ~~~~~~~~~~~~~~vv~~~~~---------------~~~~~~~l~~~~~~~~~~~l~~~~-----~P~~v~~~~~iP~t~  516 (540)
T PRK05857        457 EIPDEEFGALVGLAVVASAEL---------------DESAARALKHTIAARFRRESEPMA-----RPSTIVIVTDIPRTQ  516 (540)
T ss_pred             ecCccccccceEEEEEeCCCC---------------ChhhHHHHHHHHHHHHHhhhcccc-----CCeEEEEhhcCCCCC
Confidence            98764    344566554320               111123444444    44455555     889999999999999


Q ss_pred             CCccc
Q 006530          636 FLCLA  640 (641)
Q Consensus       636 ~~~l~  640 (641)
                      +||+.
T Consensus       517 ~GKi~  521 (540)
T PRK05857        517 SGKVM  521 (540)
T ss_pred             Cccee
Confidence            99973

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=1e-57  Score=511.24  Aligned_cols=494  Identities=25%  Similarity=0.389  Sum_probs=394.1

Q ss_pred             hHHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q 006530           23 GFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN  102 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~  102 (641)
                      .+.+..++.++.+|+++|++..+++ +++||+||.++++++|..|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus        17 ~l~~~l~~~~~~~~~~~ai~~~~~~-~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~   95 (559)
T PRK08315         17 TIGQLLDRTAARYPDREALVYRDQG-LRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAIL   95 (559)
T ss_pred             cHHHHHHHHHHHCCCCeEEEEcCCC-eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCeEE
Confidence            3445555566677888888765443 669999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEecChh----hHHHHHHhhccc-------------ccccEEEEEeCCCCCCCCCcc
Q 006530          103 VVRGSRSSSEELLHIYNHSESVALAVENPE----FFNRIAETLCSK-------------AAMRFIILLWGKKSSVAPDIV  165 (641)
Q Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~----~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~~~~  165 (641)
                      +|++|..+.+++..+++.++++.+++++..    +...+.+.....             +..+.++......        
T Consensus        96 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  167 (559)
T PRK08315         96 VTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDEK--------  167 (559)
T ss_pred             EecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecccC--------
Confidence            999999999999999999999999998531    122222211111             2223333332111        


Q ss_pred             CCCCcccHHHHHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCC
Q 006530          166 EEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAEN  245 (641)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~  245 (641)
                       ......++++............       ........++++++++|||||||.||+|.+||+++...+......+++.+
T Consensus       168 -~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~  239 (559)
T PRK08315        168 -HPGMLNFDELLALGRAVDDAEL-------AARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTE  239 (559)
T ss_pred             -CcccccHHHHHhhccccccccc-------cchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCCC
Confidence             1123456655443211110000       01123456788999999999999999999999999998888888889999


Q ss_pred             CCEEEEECChhhHHHHHH-hHhhhhcCeeEEe----cchHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHH
Q 006530          246 GDKFLSMLPPWHVYERAC-GYFIFSRGIELMY----TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARR  320 (641)
Q Consensus       246 ~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~  320 (641)
                      +|+++..+|++|++++.. .+.++..|+++++    .++..+++.++++++|++.++|+++..+........        
T Consensus       240 ~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~--------  311 (559)
T PRK08315        240 EDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFAR--------  311 (559)
T ss_pred             CceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCC--------
Confidence            999999999999999876 5666899999884    357889999999999999999999977654211110        


Q ss_pred             HHHHHHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeec
Q 006530          321 VVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGG  400 (641)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG  400 (641)
                                                                                         ..+.++|.+++||
T Consensus       312 -------------------------------------------------------------------~~~~~lr~~~~~G  324 (559)
T PRK08315        312 -------------------------------------------------------------------FDLSSLRTGIMAG  324 (559)
T ss_pred             -------------------------------------------------------------------CCchhhheeEecC
Confidence                                                                               1223458899999


Q ss_pred             CCCChhH-HHHHHHcCC-eeeeccccccccCeeeecCCCC---CcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEe
Q 006530          401 GSLPMHI-DLFYEAIGV-KVQVGYGLTESSPVIAARRPTC---NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR  475 (641)
Q Consensus       401 ~~l~~~l-~~~~~~~~~-~v~~~yG~tE~~~~~~~~~~~~---~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~  475 (641)
                      ++++..+ +.+.+.++. ++++.||+||++.++.......   ..+.++|.|+++++++|+|++++++++.|+.|||+|+
T Consensus       325 ~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~  404 (559)
T PRK08315        325 SPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTR  404 (559)
T ss_pred             CCCCHHHHHHHHHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEcCccCCcCCCCCceEEEEE
Confidence            9999887 556666765 5999999999987665544322   3467899999999999999887899999999999999


Q ss_pred             cCcccccccCCchhhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCc
Q 006530          476 GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSS  555 (641)
Q Consensus       476 g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p  555 (641)
                      |+.++.||++++..+...|..++||+|||+|++++          ||.++++||++|+|++ +|++|+|.+||+.+.++|
T Consensus       405 g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----------dg~~~~~GR~d~~i~~-~G~~v~~~eIE~~l~~~~  473 (559)
T PRK08315        405 GYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDE----------EGYVNIVGRIKDMIIR-GGENIYPREIEEFLYTHP  473 (559)
T ss_pred             CchhhhhhcCChhHHhhcCCCCCCEEccceEEEcC----------CceEEEEeeccceEEE-CCEEEcHHHHHHHHHhCC
Confidence            99999999999999998887789999999999999          8999999999999997 999999999999999999


Q ss_pred             ccceEEEEecCCC----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCC
Q 006530          556 LIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEP  631 (641)
Q Consensus       556 ~V~~~~v~g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~  631 (641)
                      +|.+++|++.+++    .+.++|++..+                ...+.++++++++++++.|+     .|++|+++++.
T Consensus       474 ~v~~~~v~~~~~~~~~~~~~~~v~~~~~----------------~~~~~~~l~~~l~~~l~~~~-----~P~~i~~v~~l  532 (559)
T PRK08315        474 KIQDVQVVGVPDEKYGEEVCAWIILRPG----------------ATLTEEDVRDFCRGKIAHYK-----IPRYIRFVDEF  532 (559)
T ss_pred             CceEEEEEecCCCCCCeEEEEEEEeCCC----------------CCCCHHHHHHHHHhhccccc-----CCcEEEEcccC
Confidence            9999999998664    45677776542                23567899999999999988     77889999999


Q ss_pred             CCCCCCccc
Q 006530          632 FTVNFLCLA  640 (641)
Q Consensus       632 ~~~~~~~l~  640 (641)
                      |.+.+||+.
T Consensus       533 P~t~~GK~~  541 (559)
T PRK08315        533 PMTVTGKIQ  541 (559)
T ss_pred             CCCCCCcee
Confidence            999999973

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=1.7e-57  Score=506.93  Aligned_cols=491  Identities=20%  Similarity=0.285  Sum_probs=391.3

Q ss_pred             hHHHHHhhhhhhhhhhhhhcc---cCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcC
Q 006530           23 GFRVFTRNCVDAVATRIRISR---RNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATG   99 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~---~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G   99 (641)
                      .+..+.+++++..|+++|+..   ..+.++.+||+||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|
T Consensus        23 ~~~~~~~~~~~~~p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G  102 (538)
T TIGR03208        23 TINDHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIG  102 (538)
T ss_pred             cHHHHHHHHHHHCCCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcC
Confidence            455566677778889988764   22345789999999999999999999999999999999999999999999999999


Q ss_pred             CEEEecCCCCCHHHHHHHHHhcCceEEEecChh----hHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHH
Q 006530          100 AINVVRGSRSSSEELLHIYNHSESVALAVENPE----FFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDE  175 (641)
Q Consensus       100 ~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  175 (641)
                      ++++|+++..+.+++.++++.++++.+++++..    ......+.....+..+.++..+++.            ...+++
T Consensus       103 ~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~  170 (538)
T TIGR03208       103 AVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDG------------DDSFDR  170 (538)
T ss_pred             EEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCC------------CcCHHH
Confidence            999999999999999999999999999997531    1122222333334444555443211            123444


Q ss_pred             HHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECCh
Q 006530          176 IIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPP  255 (641)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl  255 (641)
                      ++........+.  ..   .........++++++++|||||||.||+|.++|+++...+......+++..+|++++.+|+
T Consensus       171 ~~~~~~~~~~~~--~~---~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl  245 (538)
T TIGR03208       171 VLMTPERDDTPD--AA---AILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPM  245 (538)
T ss_pred             Hhhccccccccc--cc---cccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeCCc
Confidence            433211100000  00   0001123567899999999999999999999999999988888888889999999999999


Q ss_pred             hhHHHHHH-hHhhhhcCeeEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhH
Q 006530          256 WHVYERAC-GYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISF  331 (641)
Q Consensus       256 ~~~~g~~~-~~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (641)
                      +|..++.. .+.++..|+++++.   ++..+++.++++++|++.++|.++..+........                   
T Consensus       246 ~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~-------------------  306 (538)
T TIGR03208       246 AHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESG-------------------  306 (538)
T ss_pred             hhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccC-------------------
Confidence            99988765 56678999998874   57889999999999999999999988765322110                   


Q ss_pred             HHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHH
Q 006530          332 AYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLF  410 (641)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~  410 (641)
                                                                              ..++++|.+++||+++++.+ .++
T Consensus       307 --------------------------------------------------------~~~~~l~~~~~gG~~~~~~~~~~~  330 (538)
T TIGR03208       307 --------------------------------------------------------APVPSLFTFLCAGAPIPGILVERA  330 (538)
T ss_pred             --------------------------------------------------------CCCCcceEEEEcCCCCCHHHHHHH
Confidence                                                                    12344599999999999987 555


Q ss_pred             HHHcCCeeeeccccccccCeeeecCCCC--CcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCch
Q 006530          411 YEAIGVKVQVGYGLTESSPVIAARRPTC--NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPS  488 (641)
Q Consensus       411 ~~~~~~~v~~~yG~tE~~~~~~~~~~~~--~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~  488 (641)
                      .+.++.++++.||+||++.+........  ....++|+|+++++++|++ +++.+++.|+.|||+++|+.++.||+++++
T Consensus       331 ~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~  409 (538)
T TIGR03208       331 WELLGALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVID-ANGAKLSQGETGRLLVRGCSNFGGYLKRPH  409 (538)
T ss_pred             HHHcCCeEEeeeccCcCCCccccCcccchhhccCcccccCCCCEEEEEC-CCCCCCcCCCCcEEEEecCcccccccCCcc
Confidence            6667999999999999987765544322  2245789999999999999 457888999999999999999999999988


Q ss_pred             hhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC
Q 006530          489 ATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR  568 (641)
Q Consensus       489 ~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~  568 (641)
                      .+.  ++.+|||+|||+|++++          +|.++++||.+|+|+. +|++|+|.+||++|.+||+|.+++|++.+++
T Consensus       410 ~~~--~~~~~~~~TGD~~~~~~----------~g~l~~~gR~~~~i~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~  476 (538)
T TIGR03208       410 LNS--TDAEGWFDTGDLAFQDA----------EGYIRINGRSKDVIIR-GGENIPVVEIENLLYQHPAVAQVAIVAYPDE  476 (538)
T ss_pred             ccc--ccCCCceeccceEEECC----------CCcEEEEeccCceEEE-CCEEECHHHHHHHHhcCcceeeEEEEeccCC
Confidence            764  34689999999999999          8999999999999996 9999999999999999999999999998654


Q ss_pred             ----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHH-HHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          569 ----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       569 ----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                          .+.++|++..+                ...+.+++.+++++ +++.|+     .|++|+.+++.|.+.+||+.
T Consensus       477 ~~g~~~~a~v~~~~~----------------~~~~~~~l~~~~~~~~l~~~~-----~P~~i~~v~~iP~t~~gKv~  532 (538)
T TIGR03208       477 RLGERACAVVVPKPG----------------CTLDFAAMVAFLKAQKVALQY-----IPERLEVVDALPATPAGKIQ  532 (538)
T ss_pred             CCCceEEEEEEECCC----------------CCCCHHHHHHHHHhcchhhcc-----CCcEEEEeccCCCCCccccc
Confidence                46678887542                24566889999985 688888     77789999999999999973

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.4e-57  Score=511.55  Aligned_cols=499  Identities=23%  Similarity=0.346  Sum_probs=396.8

Q ss_pred             hhHHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCChhHHHHHHHHHhcCC
Q 006530           22 HGFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRV-IGVKPEEKLSLFSDNSCRWLVADQGMLATGA  100 (641)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~  100 (641)
                      ..+...+++.+..+|++.++..++..++++||+||.++++++|++|.+ .|+++||+|+++++|+++++++++||+++|+
T Consensus        10 ~~~~~~l~~~a~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~~G~   89 (576)
T PRK05620         10 LSLTRILEYGSTVHGDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGA   89 (576)
T ss_pred             CcHHHHHHHHHHhCCCceEEEEcCCceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcCC
Confidence            345666777788899999887766567899999999999999999986 7999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCC-CccCCCCcccHHHHHHh
Q 006530          101 INVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAP-DIVEEIPVFSYDEIIDL  179 (641)
Q Consensus       101 ~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  179 (641)
                      +++++++..+.+++.++++.++++.+++++ ...+.+.+.....+..+.++....+...... .........+|.++++.
T Consensus        90 ~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  168 (576)
T PRK05620         90 VFNPLNKQLMNDQIVHIINHAEDEVIVADP-RLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDG  168 (576)
T ss_pred             EEeecccccCHHHHHHHHhccCCcEEEECh-hhHHHHHHHHhhCccccEEEEecCcccccchhccccccccccHHHHhhc
Confidence            999999999999999999999999999985 5666666666666666666554432111000 00012234567777753


Q ss_pred             hhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHH--hhhcCCCCCCEEEEECChhh
Q 006530          180 GRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL--YDIVPAENGDKFLSMLPPWH  257 (641)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~--~~~~~~~~~d~~l~~~pl~~  257 (641)
                      ....             .......++++++++|||||||.||||.++|+++.......  ...+++.+++++++.+|++|
T Consensus       169 ~~~~-------------~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h  235 (576)
T PRK05620        169 RSTV-------------YDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYH  235 (576)
T ss_pred             CCCc-------------CCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHH
Confidence            2111             11234567899999999999999999999999986544432  33467889999999999999


Q ss_pred             HHHHHHhHhhhhcCeeEEec----chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHH
Q 006530          258 VYERACGYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAY  333 (641)
Q Consensus       258 ~~g~~~~~~~l~~G~~~v~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (641)
                      .+++...+.++..|+++++.    ++..+++.++++++|.+.++|+++..+........                     
T Consensus       236 ~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------  294 (576)
T PRK05620        236 VLSWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNP---------------------  294 (576)
T ss_pred             hhhhHHHHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccC---------------------
Confidence            99988888889999998874    57889999999999999999999988765321110                     


Q ss_pred             HHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHH
Q 006530          334 TAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYE  412 (641)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~  412 (641)
                                                                            ....++|.+++||+.+++.+ +.+.+
T Consensus       295 ------------------------------------------------------~~~~~l~~~~~gG~~~~~~~~~~~~~  320 (576)
T PRK05620        295 ------------------------------------------------------PERMSLQEIYVGGSAVPPILIKAWEE  320 (576)
T ss_pred             ------------------------------------------------------cccCceeEEEEcCCCCCHHHHHHHHH
Confidence                                                                  01123589999999999987 55566


Q ss_pred             HcCCeeeeccccccccCeeeecCCCC--------CcccccccCcCCcEEEEeeCCCCccC--CCCCCceEEEecCccccc
Q 006530          413 AIGVKVQVGYGLTESSPVIAARRPTC--------NVLGSVGHPINHTEIKIVDAETNEVL--PAGSKGIVKVRGSQVMQG  482 (641)
Q Consensus       413 ~~~~~v~~~yG~tE~~~~~~~~~~~~--------~~~~~~G~~~~~~~v~i~d~~~~~~~--~~g~~Gel~v~g~~~~~g  482 (641)
                      .+|.++++.||+||++..+.......        ....++|.+.++++++++++  +..+  +.+..|||+++|+.++.|
T Consensus       321 ~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~--g~~~~~~~~~~Gel~v~g~~~~~g  398 (576)
T PRK05620        321 RYGVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVND--GQVMESTDRNEGEIQVRGNWVTAS  398 (576)
T ss_pred             HhCCceeeeccccccccceeeeccCCccccccccccccccCCcCCceeEEEecC--CccccCCCCCceEEEEEcCccccc
Confidence            67999999999999987655433211        11347899999999999984  5444  357899999999999999


Q ss_pred             ccCCchhh----------------hhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHH
Q 006530          483 YFKNPSAT----------------KQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLE  546 (641)
Q Consensus       483 Y~~~~~~~----------------~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~  546 (641)
                      |+++++.+                ...|..+|||+|||++++++          ||.+++.||.+|+|+. +|++|+|.+
T Consensus       399 Y~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~----------dg~l~~~GR~~d~i~~-~G~~i~~~e  467 (576)
T PRK05620        399 YYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTR----------DGFLTIHDRARDVIRS-GGEWIYSAQ  467 (576)
T ss_pred             ccCCccccccccccccccccchhhhcccccCCcEecCceEEEcC----------CceEEEEechhhhhhc-CCEEEcHHH
Confidence            99999877                33354578999999999999          9999999999999996 999999999


Q ss_pred             hHHHHhcCcccceEEEEecCCCc----eEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCcc
Q 006530          547 LEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQI  622 (641)
Q Consensus       547 iE~~l~~~p~V~~~~v~g~~~~~----~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~  622 (641)
                      ||+.|.+||.|.+|+|++.+++.    ..+++++.++.             ...+...++++++++++|+.|+     .|
T Consensus       468 IE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~-------------~~~~~~~~~l~~~l~~~L~~~~-----~P  529 (576)
T PRK05620        468 LENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGI-------------EPTRETAERLRDQLRDRLPNWM-----LP  529 (576)
T ss_pred             HHHHHhcCCCceEEEEEeccCCCcCceeEEEEEecCCC-------------CcccccHHHHHHHHHhhCcccc-----CC
Confidence            99999999999999999987653    45666665431             1123456899999999999999     77


Q ss_pred             ccEEEecCCCCCCCCccc
Q 006530          623 GPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       623 ~~i~~~~~~~~~~~~~l~  640 (641)
                      +.|+++++.|.+.+||+.
T Consensus       530 ~~i~~v~~~P~t~~GKv~  547 (576)
T PRK05620        530 EYWTFVDEIDKTSVGKFD  547 (576)
T ss_pred             eEEEEeccCCCCCcccCc
Confidence            889999999999999973

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=1.2e-57  Score=506.80  Aligned_cols=482  Identities=20%  Similarity=0.280  Sum_probs=387.1

Q ss_pred             hHHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q 006530           23 GFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN  102 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~  102 (641)
                      .+...+++++..+|+++|+++.+   +++||+||.++++++|..|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus        24 ~l~~~~~~~a~~~p~~~a~~~~~---~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~  100 (527)
T TIGR02275        24 PLTDILRDQAARYPDAIAIICGN---RQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLGIAP  100 (527)
T ss_pred             cHHHHHHHHHHHCCCceEEEeCC---ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcCeEE
Confidence            35566667777889999987765   459999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEecChhhH----HHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHH
Q 006530          103 VVRGSRSSSEELLHIYNHSESVALAVENPEFF----NRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIID  178 (641)
Q Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (641)
                      +++++..+.+++.++++.++++.+++++....    ..........+.++.++...+.. .          ...+...+.
T Consensus       101 v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~~~  169 (527)
T TIGR02275       101 VLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTR-V----------EAELFLWLE  169 (527)
T ss_pred             eccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCC-C----------cchhhHHhh
Confidence            99999999999999999999999999853211    11111112223344444332110 0          011111111


Q ss_pred             hhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhH
Q 006530          179 LGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV  258 (641)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~  258 (641)
                      .....             .......++++++++|||||||.||+|.+||+++...+......+.+.++|++++.+|++|.
T Consensus       170 ~~~~~-------------~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~  236 (527)
T TIGR02275       170 SPAEP-------------VKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHN  236 (527)
T ss_pred             CcCcc-------------ccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhh
Confidence            11000             11234567899999999999999999999999999988888888889999999999999999


Q ss_pred             HHHHH--hHhhhhcCeeEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHH
Q 006530          259 YERAC--GYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAY  333 (641)
Q Consensus       259 ~g~~~--~~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (641)
                      +++..  .+.++..|+++++.   ++..++..++++++|++.++|.++..+.......                      
T Consensus       237 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~----------------------  294 (527)
T TIGR02275       237 YPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKS----------------------  294 (527)
T ss_pred             hhhhHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCcccc----------------------
Confidence            99864  56778999999884   4778899999999999999999998776532211                      


Q ss_pred             HHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhHHH-HHH
Q 006530          334 TAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYE  412 (641)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l~~-~~~  412 (641)
                                                                           ...+.++|.+++||++++..+.+ +.+
T Consensus       295 -----------------------------------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~  321 (527)
T TIGR02275       295 -----------------------------------------------------RYDLSSLKLLQVGGAKFSEAAARRVPA  321 (527)
T ss_pred             -----------------------------------------------------CCCccceEEEEEcCCCCCHHHHHHHHH
Confidence                                                                 02234459999999999999844 455


Q ss_pred             HcCCeeeeccccccccCeeeecC-CCCCcccccccCcC-CcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhh
Q 006530          413 AIGVKVQVGYGLTESSPVIAARR-PTCNVLGSVGHPIN-HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSAT  490 (641)
Q Consensus       413 ~~~~~v~~~yG~tE~~~~~~~~~-~~~~~~~~~G~~~~-~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~  490 (641)
                      .+|.++++.||+||++....... ......+++|.|++ +.+++|+| +++++++.|+.|||+++|+.++.||+++++.+
T Consensus       322 ~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d-~~g~~~~~g~~Gei~v~g~~~~~gY~~~~~~~  400 (527)
T TIGR02275       322 VFGCQLQQVFGMAEGLVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVD-DHGNPVAPGETGMLLTRGPYTFRGYYKAPEHN  400 (527)
T ss_pred             HhCCeEEeeeccCccCccccCCCCccccccccCCCCCCCCceEEEEC-CCCCCCCCCCceEEEecCCccchhhcCChhHh
Confidence            67999999999999754332211 11233467899994 88999999 56889999999999999999999999999999


Q ss_pred             hhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC--
Q 006530          491 KQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR--  568 (641)
Q Consensus       491 ~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~--  568 (641)
                      ...|+.+|||+|||+|++++          +|.+++.||.+|+|+. +|++|+|.+||+.|.+||+|.+++|++.+++  
T Consensus       401 ~~~~~~dg~~~TGDl~~~~~----------~g~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~  469 (527)
T TIGR02275       401 AAAFDAEGFYYTGDLVRLTP----------EGYIVVVGRAKDQINR-GGEKIAAEEIENLLLAHPAVHDAALVSMPDELL  469 (527)
T ss_pred             HhhcCcCCCEEcCceEEEcC----------CccEEEEecccceeec-CCEEECHHHHHHHHHhCCCceEEEEEecCCccc
Confidence            99998899999999999999          8999999999999996 9999999999999999999999999998764  


Q ss_pred             --ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHH-HHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          569 --RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       569 --~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                        .+.++|+++.+                 ..+.++++++++++ ++.|+     .|.+|.++++.|.+.+||+.
T Consensus       470 ~~~~~a~vv~~~~-----------------~~~~~~l~~~l~~~~l~~~~-----~P~~i~~v~~iP~t~sGKv~  522 (527)
T TIGR02275       470 GEKSCAFIVVRDP-----------------ALKAAQLRRFLRERGLAEYK-----LPDRVEFIDSLPLTAVGKID  522 (527)
T ss_pred             ccEEEEEEEECCC-----------------CCCHHHHHHHHHhCCCcccc-----CCCEEEEeccCCCCCcccee
Confidence              45678877542                 35678899999875 88888     77889999999999999973

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=1.6e-57  Score=504.95  Aligned_cols=488  Identities=24%  Similarity=0.332  Sum_probs=387.0

Q ss_pred             HHHHHhhhhhhhhhhhhhcccC--CceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCE
Q 006530           24 FRVFTRNCVDAVATRIRISRRN--HRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAI  101 (641)
Q Consensus        24 ~~~~~~~~~~~~~~~~a~~~~~--~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~  101 (641)
                      +..++++.++++|+++|+..++  ++++++||+||.++++++|+.|.++|+++||+|+++++|+++++++++||+++|++
T Consensus         9 l~~~~~~~a~~~p~~~a~~~~~~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~G~~   88 (517)
T PRK08008          9 LRQMWDDLADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAI   88 (517)
T ss_pred             HHHHHHHHHHHCCCceEEEcccCCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeE
Confidence            4455556667788888877653  56788999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhccc-ccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhh
Q 006530          102 NVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSK-AAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLG  180 (641)
Q Consensus       102 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (641)
                      ++++++..+.+++.++++.++++.+++++ .....+.++.... ..++.++........       ......++++....
T Consensus        89 ~v~l~~~~~~~~l~~~l~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~  160 (517)
T PRK08008         89 MVPINARLLREESAWILQNSQASLLVTSA-QFYPMYRQIQQEDATPLRHICLTRVALPA-------DDGVSSFTQLKAQQ  160 (517)
T ss_pred             EEEcCcccCHHHHHHHHHhcCceEEEEec-chhHHHHHHHhhccccCcEEEEecCCCcc-------cccccCHHHHhccC
Confidence            99999999999999999999999999986 4555555444332 234444443322111       01234454443321


Q ss_pred             hhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHH
Q 006530          181 RESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYE  260 (641)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g  260 (641)
                      ....            .......++++++++|||||||.||+|.++|+++............+.+++++++.+|++|..+
T Consensus       161 ~~~~------------~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  228 (517)
T PRK08008        161 PATL------------CYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDC  228 (517)
T ss_pred             Cccc------------cccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHH
Confidence            1100            0123346789999999999999999999999999865443333445788999999999999877


Q ss_pred             HHH-hHhhhhcCeeEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHH
Q 006530          261 RAC-GYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAF  336 (641)
Q Consensus       261 ~~~-~~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (641)
                      ... .+.++..|+++++.   ++..+++.++++++|++.++|.++..+........                        
T Consensus       229 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------  284 (517)
T PRK08008        229 QCTAAMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSAN------------------------  284 (517)
T ss_pred             HHHHHHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccc------------------------
Confidence            655 56668899999885   57889999999999999999999887754211000                        


Q ss_pred             HhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHcC
Q 006530          337 KRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG  415 (641)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~~  415 (641)
                                                                         .....++.+..++ +++... .++.+.++
T Consensus       285 ---------------------------------------------------~~~~~l~~~~~~~-~~~~~~~~~~~~~~~  312 (517)
T PRK08008        285 ---------------------------------------------------DRQHCLREVMFYL-NLSDQEKDAFEERFG  312 (517)
T ss_pred             ---------------------------------------------------cccccceeeEEec-CCCHHHHHHHHHHhC
Confidence                                                               0111235555554 666655 66777789


Q ss_pred             CeeeeccccccccCeeeecCC-CCCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEec---CcccccccCCchhhh
Q 006530          416 VKVQVGYGLTESSPVIAARRP-TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG---SQVMQGYFKNPSATK  491 (641)
Q Consensus       416 ~~v~~~yG~tE~~~~~~~~~~-~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g---~~~~~gY~~~~~~~~  491 (641)
                      .++++.||+||++..+..... .....+++|.|+++++++|+| +++++++.|+.|||+++|   +.++.||+++++.+.
T Consensus       313 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~  391 (517)
T PRK08008        313 VRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRPGFCYEAEIRD-DHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATA  391 (517)
T ss_pred             CeEEeeccccccccccccCCccccccCCccccCCCCcEEEEEC-CCCCCCCCCCcceEEEeCCCCcchhhhHhCChHHHh
Confidence            999999999999765543332 234457899999999999999 568899999999999997   689999999999999


Q ss_pred             hccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCC----
Q 006530          492 QALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----  567 (641)
Q Consensus       492 ~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~----  567 (641)
                      +.|..+|||+|||+|++++          ||.+++.||.+|+|+. +|++|+|.+||+++.+||.|.+++|+|.++    
T Consensus       392 ~~~~~~g~~~TGDl~~~~~----------~g~~~~~GR~~d~i~~-~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~  460 (517)
T PRK08008        392 KVLEADGWLHTGDTGYVDE----------EGFFYFVDRRCNMIKR-GGENVSCVELENIIATHPKIQDIVVVGIKDSIRD  460 (517)
T ss_pred             hcccCCCCeeccceEEECC----------CCcEEEeecccceEEe-CCEEECHHHHHHHHHhCCceeeEEEEccCCCCCC
Confidence            9998899999999999999          8999999999999997 999999999999999999999999999865    


Q ss_pred             CceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          568 RRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       568 ~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                      +.+.++|+++.+                .+.+.++++++++++++.|+     .|..+.++++.|.+.+||+.
T Consensus       461 ~~~~~~v~~~~~----------------~~~~~~~l~~~~~~~l~~~~-----~P~~~~~v~~iP~t~~gK~~  512 (517)
T PRK08008        461 EAIKAFVVLNEG----------------ETLSEEEFFAFCEQNMAKFK-----VPSYLEIRKDLPRNCSGKII  512 (517)
T ss_pred             ceEEEEEEECCC----------------CCCCHHHHHHHHHhhccccc-----CCcEEEEeccCCCCCcccee
Confidence            357788887743                34567899999999999998     77789999999999999973

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.6e-57  Score=506.89  Aligned_cols=487  Identities=23%  Similarity=0.366  Sum_probs=387.7

Q ss_pred             HHHHHhhhhhhhhhhhhhccc-CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q 006530           24 FRVFTRNCVDAVATRIRISRR-NHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN  102 (641)
Q Consensus        24 ~~~~~~~~~~~~~~~~a~~~~-~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~  102 (641)
                      +..+.++.+..+|++.++.+. +++++.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        12 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~G~~~   91 (539)
T PRK07008         12 ISSLIAHAARHAGDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVC   91 (539)
T ss_pred             HHHHHHHHHhhCCCceEEEeeccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEE
Confidence            444555666677777776543 4556789999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhh
Q 006530          103 VVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRE  182 (641)
Q Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (641)
                      +++++..+.+++.++++.+++++++++. .+...+.+.......++.++...+.... ...   ..+...++++......
T Consensus        92 v~l~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~l~~~~~~  166 (539)
T PRK07008         92 HTINPRLFPEQIAYIVNHAEDRYVLFDL-TFLPLVDALAPQCPNVKGWVAMTDAAHL-PAG---STPLLCYETLVGAQDG  166 (539)
T ss_pred             eecccccCHHHHHHHHhccCCcEEEEcc-hhHHHHHHHHhhCCCceEEEEEccCCcc-ccC---CcccccHHHHhcccCC
Confidence            9999999999999999999999999985 5555555555555555555544332211 100   1335667776543221


Q ss_pred             hhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHH--HHhhhcCCCCCCEEEEECChhhHHH
Q 006530          183 SRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR--SLYDIVPAENGDKFLSMLPPWHVYE  260 (641)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~--~~~~~~~~~~~d~~l~~~pl~~~~g  260 (641)
                      .             .......++++++++|||||||.||+|.+||++++....  .....+++.++|+++..+|++|..+
T Consensus       167 ~-------------~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~  233 (539)
T PRK07008        167 D-------------YDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNA  233 (539)
T ss_pred             C-------------cCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhh
Confidence            1             112345678899999999999999999999999864332  3334567888999999999999888


Q ss_pred             HHHhHhhhhcCeeEEec----chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHH
Q 006530          261 RACGYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAF  336 (641)
Q Consensus       261 ~~~~~~~l~~G~~~v~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (641)
                      +...+.++..|+++++.    ++..+.+.++++++|++.++|+++..+.+......                        
T Consensus       234 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~------------------------  289 (539)
T PRK07008        234 WGLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAG------------------------  289 (539)
T ss_pred             HHHHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccC------------------------
Confidence            76667778999999875    46889999999999999999999988765322110                        


Q ss_pred             HhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHcC
Q 006530          337 KRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG  415 (641)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~~  415 (641)
                                                                         ..++++|.++++|+++++.+ .++.+.++
T Consensus       290 ---------------------------------------------------~~~~~l~~~~~~G~~l~~~~~~~~~~~~~  318 (539)
T PRK07008        290 ---------------------------------------------------LRFSTLRRTVIGGSACPPAMIRTFEDEYG  318 (539)
T ss_pred             ---------------------------------------------------CCcccceEEEEcCCCCCHHHHHHHHHHhC
Confidence                                                               23445689999999999987 55667789


Q ss_pred             CeeeeccccccccCeeeecCCCC-----------CcccccccCcCCcEEEEeeCCCCccCCCC--CCceEEEecCccccc
Q 006530          416 VKVQVGYGLTESSPVIAARRPTC-----------NVLGSVGHPINHTEIKIVDAETNEVLPAG--SKGIVKVRGSQVMQG  482 (641)
Q Consensus       416 ~~v~~~yG~tE~~~~~~~~~~~~-----------~~~~~~G~~~~~~~v~i~d~~~~~~~~~g--~~Gel~v~g~~~~~g  482 (641)
                      .++++.||+||++..+..+....           ....++|.|+|+++++|+|+ ++.+++.+  +.|||+++|+.++.|
T Consensus       319 ~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d~-~~~~~~~~~~~~Gei~v~g~~~~~g  397 (539)
T PRK07008        319 VEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGD-DGRELPWDGKAFGDLQVRGPWVIDR  397 (539)
T ss_pred             CceecccccccccccceecccccccccCCchhhhhhcccCCccccceEEEEECC-CCCccCCCCCcceEEEEeCCccchh
Confidence            99999999999986554332110           12357899999999999995 56677653  579999999999999


Q ss_pred             ccCCchhhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEE
Q 006530          483 YFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVV  562 (641)
Q Consensus       483 Y~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v  562 (641)
                      |++++.   ..+ .+|||+|||++++++          ||.+++.||++|+|+. +|++|+|.+||+.+..||.|.+++|
T Consensus       398 y~~~~~---~~~-~~g~~~TGD~~~~~~----------dg~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~v~~~~v  462 (539)
T PRK07008        398 YFRGDA---SPL-VDGWFPTGDVATIDA----------DGFMQITDRSKDVIKS-GGEWISSIDIENVAVAHPAVAEAAC  462 (539)
T ss_pred             hcCChh---hhh-cCCCcccCceEEEcC----------CCcEEEeecccCEEEe-CCeEEcHHHHHHHHHhCCceeEEEE
Confidence            999983   234 378999999999999          9999999999999996 9999999999999999999999999


Q ss_pred             EecCCC----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCc
Q 006530          563 IGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLC  638 (641)
Q Consensus       563 ~g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~  638 (641)
                      ++.+++    .+.++|+..++                ...+.++++++++++|+.|+     .|+.|+++++.|.+.+||
T Consensus       463 ~~~~~~~~~~~~~~~v~~~~~----------------~~~~~~~l~~~~~~~l~~~~-----~P~~i~~v~~lP~t~sgK  521 (539)
T PRK07008        463 IACAHPKWDERPLLVVVKRPG----------------AEVTREELLAFYEGKVAKWW-----IPDDVVFVDAIPHTATGK  521 (539)
T ss_pred             EecCCchhccceEEEEEeCCC----------------CccCHHHHHHHHHhhccccc-----CCeEEEEecCCCCCCccc
Confidence            998764    45667666543                23567899999999999998     788899999999999999


Q ss_pred             cc
Q 006530          639 LA  640 (641)
Q Consensus       639 l~  640 (641)
                      +.
T Consensus       522 i~  523 (539)
T PRK07008        522 LQ  523 (539)
T ss_pred             ee
Confidence            74

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=1.2e-57  Score=501.43  Aligned_cols=458  Identities=25%  Similarity=0.363  Sum_probs=381.6

Q ss_pred             HHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEEec
Q 006530           26 VFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVR  105 (641)
Q Consensus        26 ~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v~l  105 (641)
                      ++.++.+...|+++|+...+   +.+||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|+
T Consensus         6 ~~l~~~a~~~p~~~a~~~~~---~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~i   82 (483)
T PRK03640          6 NWLKQRAFLTPDRTAIEFEE---KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLL   82 (483)
T ss_pred             HHHHHHHHhCCCceEEEeCC---eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEEEec
Confidence            44555666778898887766   569999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhhhc
Q 006530          106 GSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRK  185 (641)
Q Consensus       106 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (641)
                      ++..+.+++.++++.++++.+++++ .....+....                            ...++++........ 
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~vi~~~-~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~-  132 (483)
T PRK03640         83 NTRLSREELLWQLDDAEVKCLITDD-DFEAKLIPGI----------------------------SVKFAELMNGPKEEA-  132 (483)
T ss_pred             CcCCCHHHHHHHHHhCCCCEEEEcc-hhhHHHhhhc----------------------------cccHHHHhhcccccC-
Confidence            9999999999999999999999985 3332221110                            012333332211100 


Q ss_pred             ccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHHHhH
Q 006530          186 AFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGY  265 (641)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~  265 (641)
                                 .......++++++++|||||||.||+|.+||+++...+......+++.++|++++.+|++|+.++...+
T Consensus       133 -----------~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~  201 (483)
T PRK03640        133 -----------EIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLSILM  201 (483)
T ss_pred             -----------CCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHHHHH
Confidence                       111234678999999999999999999999999988887777778999999999999999999998888


Q ss_pred             hhhhcCeeEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhHhcc
Q 006530          266 FIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEG  342 (641)
Q Consensus       266 ~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (641)
                      .++..|+++++.   ++..+.+.++++++|++.++|+++..+.+.....                               
T Consensus       202 ~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-------------------------------  250 (483)
T PRK03640        202 RSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-------------------------------  250 (483)
T ss_pred             HHHhcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc-------------------------------
Confidence            889999999985   5788999999999999999999999886532111                               


Q ss_pred             cccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhHHHHHHHcCCeeeecc
Q 006530          343 FCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGY  422 (641)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l~~~~~~~~~~v~~~y  422 (641)
                                                                   ....++|.+++||++++..+.+....++.++++.|
T Consensus       251 ---------------------------------------------~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~Y  285 (483)
T PRK03640        251 ---------------------------------------------TYPSSFRCMLLGGGPAPKPLLEQCKEKGIPVYQSY  285 (483)
T ss_pred             ---------------------------------------------ccCCcceEEEEcCCCCCHHHHHHHHHhCCCeeeee
Confidence                                                         01123499999999999988666666799999999


Q ss_pred             ccccccCeeeecCC--CCCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccCCCCcc
Q 006530          423 GLTESSPVIAARRP--TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWL  500 (641)
Q Consensus       423 G~tE~~~~~~~~~~--~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~  500 (641)
                      |+||++..+.....  ....++++|.|+++++++|.++  +++++.|+.|||+++|+.++.||++++..+...| .+|||
T Consensus       286 G~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~~--~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~~~~  362 (483)
T PRK03640        286 GMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEKD--GVVVPPFEEGEIVVKGPNVTKGYLNREDATRETF-QDGWF  362 (483)
T ss_pred             ccCcccccccccCcccccccCCCcccccCCcEEEEecC--CCcCCCCCceEEEEECcchhhhhcCCHHHHHHHH-hcCCe
Confidence            99998754332222  2345688999999999999884  3789999999999999999999999999998888 58999


Q ss_pred             ccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC----ceEEEEec
Q 006530          501 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVP  576 (641)
Q Consensus       501 ~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----~~~a~vv~  576 (641)
                      +|||++++++          ||.+++.||++|+++. +|.+|+|.+||+.+.++|+|.+++|++.+++    .+.+++++
T Consensus       363 ~tGDl~~~~~----------~g~l~~~GR~~~~i~~-~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~  431 (483)
T PRK03640        363 KTGDIGYLDE----------EGFLYVLDRRSDLIIS-GGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVK  431 (483)
T ss_pred             eccceEEEcC----------CCCEEEeecccCeEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEe
Confidence            9999999999          9999999999999997 9999999999999999999999999998764    34565664


Q ss_pred             CHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          577 DKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       577 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                      .                  ...+.++++++++++|+.|+     .|++|+++++.|.+.+||+.
T Consensus       432 ~------------------~~~~~~~l~~~~~~~l~~~~-----~p~~i~~~~~iP~t~~gK~~  472 (483)
T PRK03640        432 S------------------GEVTEEELRHFCEEKLAKYK-----VPKRFYFVEELPRNASGKLL  472 (483)
T ss_pred             C------------------CCCCHHHHHHHHHHhccCCC-----CCcEEEEeCCCCCCCcccee
Confidence            3                  24577889999999999887     77899999999999999973

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.8e-58  Score=510.21  Aligned_cols=487  Identities=18%  Similarity=0.229  Sum_probs=378.1

Q ss_pred             HHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEE
Q 006530           24 FRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINV  103 (641)
Q Consensus        24 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v  103 (641)
                      +..++++++.++|+++|++..++ .+++||+||.++++++|++|.+.|+++||+|+|+++|+++++++++||+++|++++
T Consensus        18 l~~~l~~~a~~~p~~~ai~~~~~-~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v   96 (534)
T PRK05852         18 IADLVEVAATRLPEAPALVVTAD-RIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVV   96 (534)
T ss_pred             HHHHHHHHHHhCCCCcEEEecCC-CCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCcEEe
Confidence            44555666677889998876443 25699999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhh
Q 006530          104 VRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRES  183 (641)
Q Consensus       104 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (641)
                      ++++.++.+++.++++.++++.+|+++... ......  ........+.+...... ..    ......+...     ..
T Consensus        97 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~-----~~  163 (534)
T PRK05852         97 PLDPALPIAEQRVRSQAAGARVVLIDADGP-HDRAEP--TTRWWPLTVNVGGDSGP-SG----GTLSVHLDAA-----TE  163 (534)
T ss_pred             ecCCCCCcHHHHHHHHhCCCCEEEEcCCCc-chhccc--cccccceeeeecccccc-cc----cccccccccc-----cC
Confidence            999999999999999999999999975221 111000  00011111111111100 00    0000000000     00


Q ss_pred             hcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHHH
Q 006530          184 RKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC  263 (641)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~  263 (641)
                      ....         ........++.++++|||||||.||||.++|+++...+......+++.++|++++.+|++|.+++..
T Consensus       164 ~~~~---------~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~  234 (534)
T PRK05852        164 PTPA---------TSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIA  234 (534)
T ss_pred             CCcc---------ccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhHHHHH
Confidence            0000         0011122467899999999999999999999999998888888889999999999999999999876


Q ss_pred             -hHhhhhcCeeEEec-----chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHH
Q 006530          264 -GYFIFSRGIELMYT-----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFK  337 (641)
Q Consensus       264 -~~~~l~~G~~~v~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (641)
                       .+.++..|+++++.     ++..+++.++++++|.++++|+++..+.+......                         
T Consensus       235 ~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------------  289 (534)
T PRK05852        235 ALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEP-------------------------  289 (534)
T ss_pred             HHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhccccc-------------------------
Confidence             45558888888873     46789999999999999999999988876422110                         


Q ss_pred             hHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHcCC
Q 006530          338 RIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGV  416 (641)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~~~  416 (641)
                                                                      ......++|.+.++|+++++.+ +.+.+.++.
T Consensus       290 ------------------------------------------------~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~  321 (534)
T PRK05852        290 ------------------------------------------------SGRKPAALRFIRSCSAPLTAETAQALQTEFAA  321 (534)
T ss_pred             ------------------------------------------------ccccCCCeeEEEECCCCCCHHHHHHHHHHhCC
Confidence                                                            0123345699999999999988 445556799


Q ss_pred             eeeeccccccccCeeeecCCC-----CCcccccccC--cCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchh
Q 006530          417 KVQVGYGLTESSPVIAARRPT-----CNVLGSVGHP--INHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSA  489 (641)
Q Consensus       417 ~v~~~yG~tE~~~~~~~~~~~-----~~~~~~~G~~--~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~  489 (641)
                      ++++.||+||++...+.....     .....+.|.+  .+|++++|+|+ +++++++|+.|||+++|+.++.||+++++.
T Consensus       322 ~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~g~~~~i~d~-~g~~~~~g~~Gel~v~g~~v~~gY~~~~~~  400 (534)
T PRK05852        322 PVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGRSTGAQIRIVGS-DGLPLPAGAVGEVWLRGTTVVRGYLGDPTI  400 (534)
T ss_pred             ChhhccCccccchhhhcCCccccccccCcccccccCCCCCCCeEEEECC-CCCCCCCCCceEEEEecCcccchhcCCccc
Confidence            999999999998765543221     1111233444  78999999995 578899999999999999999999999999


Q ss_pred             hhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC-
Q 006530          490 TKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR-  568 (641)
Q Consensus       490 ~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~-  568 (641)
                      +.+.| .+|||+|||+|++++          ||.+++.||++|+|+. +|.+|+|.+||+++.+||+|.+|+|+|.+++ 
T Consensus       401 t~~~~-~~g~~~TGD~~~~d~----------dG~l~~~gR~~d~i~~-~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~  468 (534)
T PRK05852        401 TAANF-TDGWLRTGDLGSLSA----------AGDLSIRGRIKELINR-GGEKISPERVEGVLASHPNVMEAAVFGVPDQL  468 (534)
T ss_pred             chhhh-cCCCcccCceEEEeC----------CCcEEEEecchhhEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcC
Confidence            99888 489999999999999          9999999999999996 9999999999999999999999999998764 


Q ss_pred             ---ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          569 ---RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       569 ---~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                         .+.++|+++.+                ...+.+++.++++++|+.|+     +|++|.++++.|.+.+||+.
T Consensus       469 ~g~~~~~~vv~~~~----------------~~~~~~~i~~~~~~~l~~~~-----~P~~i~~v~~iP~t~~GKi~  522 (534)
T PRK05852        469 YGEAVAAVIVPRES----------------APPTAEELVQFCRERLAAFE-----IPASFQEASGLPHTAKGSLD  522 (534)
T ss_pred             cCceEEEEEEECCC----------------CCCCHHHHHHHHHHhccccc-----CCeEEEEhhhcCCCCCcccc
Confidence               46677776532                23567899999999999998     77889999999999999973

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=1.5e-57  Score=510.61  Aligned_cols=499  Identities=21%  Similarity=0.290  Sum_probs=375.7

Q ss_pred             HHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEEe
Q 006530           25 RVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVV  104 (641)
Q Consensus        25 ~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v~  104 (641)
                      ..+.++++.++|++.|++.++.   ++||+||.++++++|++|.++|+++||+|+|+++|++++++++|||+++|++++|
T Consensus        17 ~~~l~~~~~~~p~~~Al~~~~~---~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G~~~vp   93 (579)
T PLN03102         17 ITFLKRASECYPNRTSIIYGKT---RFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNP   93 (579)
T ss_pred             HHHHHHHHHhCCCCeEEEECCc---EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEee
Confidence            3445566677899999887654   5999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccc------cccEEEEEeCCCCCCCCCccCCCCcccHHHHHH
Q 006530          105 RGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKA------AMRFIILLWGKKSSVAPDIVEEIPVFSYDEIID  178 (641)
Q Consensus       105 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (641)
                      +++.++.+++.++++.++++++|+++ +....+.++.....      .++ ++.+++......    ......++.+++.
T Consensus        94 l~~~~~~~~l~~~l~~~~~~~ii~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~  167 (579)
T PLN03102         94 INTRLDATSIAAILRHAKPKILFVDR-SFEPLAREVLHLLSSEDSNLNLP-VIFIHEIDFPKR----PSSEELDYECLIQ  167 (579)
T ss_pred             ccccCCHHHHHHHHhccCCeEEEECh-hhHHHHHHHHhhccccccccCce-EEEecccccccC----CcccccCHHHHHh
Confidence            99999999999999999999999985 44455544433222      122 233322111100    0112345666554


Q ss_pred             hhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhH
Q 006530          179 LGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV  258 (641)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~  258 (641)
                      .........        .......+++++++|+|||||||.||+|.++|+++................++++..+|++|.
T Consensus       168 ~~~~~~~~~--------~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~  239 (579)
T PLN03102        168 RGEPTPSLV--------ARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHC  239 (579)
T ss_pred             ccCCCCccc--------ccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChhhh
Confidence            322111000        001123457899999999999999999999999975544444444556677899999999999


Q ss_pred             HHHHHhHhhhhcCeeEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHH
Q 006530          259 YERACGYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTA  335 (641)
Q Consensus       259 ~g~~~~~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (641)
                      .++...+.++..|+++++.   ++..+++.++++++|++.++|+++..+.+......                       
T Consensus       240 ~g~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-----------------------  296 (579)
T PLN03102        240 NGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDL-----------------------  296 (579)
T ss_pred             cchhHHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCccccc-----------------------
Confidence            9988777778888888764   57789999999999999999999998875321110                       


Q ss_pred             HHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhHHHHHHHcC
Q 006530          336 FKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIG  415 (641)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l~~~~~~~~  415 (641)
                                                                          ....+++.+++||++++..+..+++.+|
T Consensus       297 ----------------------------------------------------~~~~~~~~~~~gg~~~~~~~~~~~~~~g  324 (579)
T PLN03102        297 ----------------------------------------------------SPRSGPVHVLTGGSPPPAALVKKVQRLG  324 (579)
T ss_pred             ----------------------------------------------------CCcccceEEEECCCCCCHHHHHHHHHcC
Confidence                                                                1112337789999999999877777789


Q ss_pred             CeeeeccccccccCeeeecCCC--------------CCcccccccCcCCcEEEEeeCCCCccCCC--CCCceEEEecCcc
Q 006530          416 VKVQVGYGLTESSPVIAARRPT--------------CNVLGSVGHPINHTEIKIVDAETNEVLPA--GSKGIVKVRGSQV  479 (641)
Q Consensus       416 ~~v~~~yG~tE~~~~~~~~~~~--------------~~~~~~~G~~~~~~~v~i~d~~~~~~~~~--g~~Gel~v~g~~~  479 (641)
                      .++++.||+||+++........              ....+..+.+.+  .+.+++.+.+++++.  ++.|||+++|+.+
T Consensus       325 ~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~v~i~~~~~~~~v~~~~~~~GEl~v~g~~~  402 (579)
T PLN03102        325 FQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLA--DVDVKNKETQESVPRDGKTMGEIVIKGSSI  402 (579)
T ss_pred             CeEEeecCccccCccccccccccccccCCcccccccccCCCccccccc--ceEEeccccccccCCCCCCceEEEEECcch
Confidence            9999999999987644322110              011223333444  355666566667764  3689999999999


Q ss_pred             cccccCCchhhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccce
Q 006530          480 MQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ  559 (641)
Q Consensus       480 ~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~  559 (641)
                      +.||+++++.+.+.| .+|||+|||+|++++          ||.+++.||.+|+|+. +|++|+|.+||+.+.+||.|.+
T Consensus       403 ~~GY~~~~~~t~~~f-~~gw~~TGDlg~~d~----------dG~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~  470 (579)
T PLN03102        403 MKGYLKNPKATSEAF-KHGWLNTGDVGVIHP----------DGHVEIKDRSKDIIIS-GGENISSVEVENVLYKYPKVLE  470 (579)
T ss_pred             hhhhcCChhhhHhhh-ccCceecCceEEEcC----------CCeEEEEeccCcEEEE-CCEEECHHHHHHHHHhCCCcce
Confidence            999999999999988 489999999999999          9999999999999997 9999999999999999999999


Q ss_pred             EEEEecCCC----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCC
Q 006530          560 IVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN  635 (641)
Q Consensus       560 ~~v~g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~  635 (641)
                      ++|++.+++    .+.++|+++.+......+     . ........+++++++++|+.|+     .|..|+++++.|.+.
T Consensus       471 a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~-----~-~~~~~~~~~l~~~~~~~L~~~~-----~P~~i~~~~~~P~t~  539 (579)
T PLN03102        471 TAVVAMPHPTWGETPCAFVVLEKGETTKEDR-----V-DKLVTRERDLIEYCRENLPHFM-----CPRKVVFLQELPKNG  539 (579)
T ss_pred             eEEEeccCccccceeEEEEEecCcccccccc-----c-ccccccHHHHHHHHHhhccccc-----CCeEEEEcccCCCCC
Confidence            999998764    566888876432000000     0 0001135789999999999999     788899999999999


Q ss_pred             CCccc
Q 006530          636 FLCLA  640 (641)
Q Consensus       636 ~~~l~  640 (641)
                      +||+.
T Consensus       540 ~gKi~  544 (579)
T PLN03102        540 NGKIL  544 (579)
T ss_pred             ccccc
Confidence            99973

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.7e-57  Score=503.70  Aligned_cols=482  Identities=21%  Similarity=0.248  Sum_probs=394.3

Q ss_pred             HHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEE
Q 006530           24 FRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINV  103 (641)
Q Consensus        24 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v  103 (641)
                      +.+.+++.+...|+++|+...++.   +||.||.++++++|.+|.+.|+++||+|+|+++|+++++++++||+++|++++
T Consensus        19 ~~~~~~~~a~~~~~~~a~~~~~~~---~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~v   95 (542)
T PRK07786         19 WVNQLARHALMQPDAPALRFLGNT---TTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAV   95 (542)
T ss_pred             HHHHHHHHHHHCCCCeEEEeCCCc---ccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEE
Confidence            444555556678888888877654   99999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhh
Q 006530          104 VRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRES  183 (641)
Q Consensus       104 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (641)
                      |+++..+.+++.++++.++++.+++++ .....+.......+..+.++...+...         .+..++++++......
T Consensus        96 pl~~~~~~~~~~~~l~~~~~~~ii~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~  165 (542)
T PRK07786         96 PVNFRLTPPEIAFLVSDCGAHVVVTEA-ALAPVATAVRDIVPLLSTVVVAGGSSD---------DSVLGYEDLLAEAGPA  165 (542)
T ss_pred             EcCccCCHHHHHHHHHhCCCcEEEEcc-chHHHHHHhhhccCccceEEEecCCCc---------ccccCHHHHhhccCCC
Confidence            999999999999999999999999985 444444444444455555555443211         1235666665432111


Q ss_pred             hcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCC-CCCCEEEEECChhhHHHHH
Q 006530          184 RKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA-ENGDKFLSMLPPWHVYERA  262 (641)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~-~~~d~~l~~~pl~~~~g~~  262 (641)
                                   ........+++++++|||||||.||+|.+||+++...+......+++ ..++++++.+|++|.+|+.
T Consensus       166 -------------~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~  232 (542)
T PRK07786        166 -------------HAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIG  232 (542)
T ss_pred             -------------CCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHH
Confidence                         11223456789999999999999999999999999888887777777 6789999999999999998


Q ss_pred             HhHhhhhcCeeEEec-----chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHH
Q 006530          263 CGYFIFSRGIELMYT-----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFK  337 (641)
Q Consensus       263 ~~~~~l~~G~~~v~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (641)
                      ..+.++..|+++++.     ++..+++.++++++|+++++|+++..+........                         
T Consensus       233 ~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~-------------------------  287 (542)
T PRK07786        233 SMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARP-------------------------  287 (542)
T ss_pred             HHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCc-------------------------
Confidence            888889999999874     57889999999999999999999988865321100                         


Q ss_pred             hHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHc-C
Q 006530          338 RIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-G  415 (641)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~-~  415 (641)
                                                                        .. ..+|.+++||+++++.+ +.+.+.+ +
T Consensus       288 --------------------------------------------------~~-~~lr~i~~gg~~~~~~~~~~~~~~~~~  316 (542)
T PRK07786        288 --------------------------------------------------RD-LALRVLSWGAAPASDTLLRQMAATFPE  316 (542)
T ss_pred             --------------------------------------------------cC-cceEEEEECCCCCCHHHHHHHHHHcCC
Confidence                                                              00 12489999999999987 5555666 7


Q ss_pred             CeeeeccccccccCeeeecCCC--CCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhc
Q 006530          416 VKVQVGYGLTESSPVIAARRPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQA  493 (641)
Q Consensus       416 ~~v~~~yG~tE~~~~~~~~~~~--~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~  493 (641)
                      .++++.||+||++.+.......  ...++++|.|++++.++|+| +++..++.|+.|||+++|+.++.||+++++.+...
T Consensus       317 ~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~  395 (542)
T PRK07786        317 AQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVD-ENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEA  395 (542)
T ss_pred             CeEEeeecccccccceEecCcccccccCCCccccCCCceEEEEC-CCCCCCcCCCceEEEEEChhhhhhhcCCHHHHHHH
Confidence            8999999999998765543322  23557899999999999999 55788999999999999999999999999999988


Q ss_pred             cCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC----c
Q 006530          494 LDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----R  569 (641)
Q Consensus       494 ~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----~  569 (641)
                      | .+|||+|||++++++          +|.+++.||.+|+|++ +|++|+|.+||+.+.+||+|.+++|++.+++    .
T Consensus       396 f-~~~~~~TGDl~~~~~----------~g~~~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~  463 (542)
T PRK07786        396 F-AGGWFHSGDLVRQDE----------EGYVWVVDRKKDMIIS-GGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEV  463 (542)
T ss_pred             h-hCCcccccceEEEcC----------CceEEEEecccceEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCcccCce
Confidence            8 589999999999999          8999999999999997 9999999999999999999999999997643    4


Q ss_pred             eEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          570 PGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       570 ~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                      ..++|+++.+               ......+++.++++++++.|+     .|++|+++++.|.+.+||+.
T Consensus       464 ~~~~v~~~~~---------------~~~~~~~~l~~~l~~~l~~~~-----~P~~i~~v~~iP~t~~GKv~  514 (542)
T PRK07786        464 PVAVAAVRND---------------DAALTLEDLAEFLTDRLARYK-----HPKALEIVDALPRNPAGKVL  514 (542)
T ss_pred             EEEEEEECCC---------------CCCCCHHHHHHHHHhhccCCC-----CCCEEEEeccCCCCCccccc
Confidence            5677776532               122456889999999999887     78889999999999999974

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.8e-57  Score=505.71  Aligned_cols=478  Identities=21%  Similarity=0.321  Sum_probs=382.7

Q ss_pred             HHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEEec
Q 006530           26 VFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVR  105 (641)
Q Consensus        26 ~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v~l  105 (641)
                      .++++.+.++|+++++..++   +++||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++++
T Consensus        11 ~~~~~~a~~~p~~~a~~~~~---~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~v~l   87 (528)
T PRK07470         11 HFLRQAARRFPDRIALVWGD---RSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVWVPT   87 (528)
T ss_pred             HHHHHHHHHCCCceEEEECC---ccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCCeEEEec
Confidence            34455556678888887765   459999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhhhc
Q 006530          106 GSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRK  185 (641)
Q Consensus       106 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (641)
                      ++..+.+++.++++.++++.+++++ .....+..........+.++.+....           ...++++++....... 
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~-  154 (528)
T PRK07470         88 NFRQTPDEVAYLAEASGARAMICHA-DFPEHAAAVRAASPDLTHVVAIGGAR-----------AGLDYEALVARHLGAR-  154 (528)
T ss_pred             CccCCHHHHHHHHHhcCceEEEEcc-hhHHHHHHHHhhCCcCceEEEeCCCc-----------ccccHHHHHhcCCCCC-
Confidence            9999999999999999999999986 44444444433333444444443211           1235555544321110 


Q ss_pred             ccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhh-c-CCCCCCEEEEECChhhHHHHHH
Q 006530          186 AFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI-V-PAENGDKFLSMLPPWHVYERAC  263 (641)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~-~-~~~~~d~~l~~~pl~~~~g~~~  263 (641)
                                 .......++++++++|||||||.||+|.++|+++...+...... + +..++|+++..+|++|++++..
T Consensus       155 -----------~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~  223 (528)
T PRK07470        155 -----------VANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQ  223 (528)
T ss_pred             -----------CCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHHH
Confidence                       11234567899999999999999999999999987655433222 2 4677899999999999999865


Q ss_pred             hHhhhhcCeeEEec-----chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHh
Q 006530          264 GYFIFSRGIELMYT-----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKR  338 (641)
Q Consensus       264 ~~~~l~~G~~~v~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (641)
                      .+ .+..|++.++.     ++..+++.++++++|++.++|+++..+.+.....                           
T Consensus       224 ~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---------------------------  275 (528)
T PRK07470        224 LC-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVD---------------------------  275 (528)
T ss_pred             HH-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcC---------------------------
Confidence            44 45666666543     4778999999999999999999998876531110                           


Q ss_pred             HhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHcCCe
Q 006530          339 IYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVK  417 (641)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~~~~  417 (641)
                                                                      ...++++|.+++||++++... ..+.+.+|..
T Consensus       276 ------------------------------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~  307 (528)
T PRK07470        276 ------------------------------------------------RYDHSSLRYVIYAGAPMYRADQKRALAKLGKV  307 (528)
T ss_pred             ------------------------------------------------CCCCcceEEEEEcCCCCCHHHHHHHHHHhCcH
Confidence                                                            013445699999999999876 5566667889


Q ss_pred             eeeccccccccCeeeecCC--------CCCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchh
Q 006530          418 VQVGYGLTESSPVIAARRP--------TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSA  489 (641)
Q Consensus       418 v~~~yG~tE~~~~~~~~~~--------~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~  489 (641)
                      +++.||+||+++.+.....        .....+++|.|+++++++++| +++++++.|+.|||+++|+.++.||+++++.
T Consensus       308 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~  386 (528)
T PRK07470        308 LVQYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQD-DEGRELPPGETGEICVIGPAVFAGYYNNPEA  386 (528)
T ss_pred             HHHhCCCcccCCceeecchhhccccccccceeeccCcccCCcEEEEEC-CCCCCCCCCCceEEEEeCCccchhhcCCHHH
Confidence            9999999998876654332        123457899999999999999 4688899999999999999999999999999


Q ss_pred             hhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCCc
Q 006530          490 TKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR  569 (641)
Q Consensus       490 ~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~~  569 (641)
                      +...| .+|||+|||+|++++          +|.+++.||.+|+|++ +|++|+|.+||+.+.++|.|.+|+|++.+++.
T Consensus       387 ~~~~~-~~~~~~TGDl~~~~~----------~g~l~~~GR~dd~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~  454 (528)
T PRK07470        387 NAKAF-RDGWFRTGDLGHLDA----------RGFLYITGRASDMYIS-GGSNVYPREIEEKLLTHPAVSEVAVLGVPDPV  454 (528)
T ss_pred             HHhhh-cCCcEecceeEEEcc----------CCeEEEeCCccceEEe-CCEEECHHHHHHHHHhCCCceEEEEEeccCcc
Confidence            98888 589999999999999          8999999999999997 99999999999999999999999999987653


Q ss_pred             ----eEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          570 ----PGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       570 ----~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                          ..++++++++                ...+.++++++++++|+.|+     .|.+++++++.|.+.+||+.
T Consensus       455 ~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~l~~~~-----~P~~~~~~~~iP~t~~GKi~  508 (528)
T PRK07470        455 WGEVGVAVCVARDG----------------APVDEAELLAWLDGKVARYK-----LPKRFFFWDALPKSGYGKIT  508 (528)
T ss_pred             cCceeEEEEEECCC----------------CCCCHHHHHHHHHHhhhcCC-----CCcEEEEeccCCCCCccccc
Confidence                4566666532                23577899999999999998     77789999999999999973

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=2.3e-57  Score=506.98  Aligned_cols=488  Identities=23%  Similarity=0.305  Sum_probs=394.8

Q ss_pred             hHHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q 006530           23 GFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN  102 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~  102 (641)
                      .+...+++.++++|++++++..++  +++||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        24 ~l~~~~~~~~~~~pd~~a~~~~~~--~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~  101 (547)
T PRK06087         24 SLADYWQQTARAMPDKIAVVDNHG--ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVS  101 (547)
T ss_pred             CHHHHHHHHHHHCCCceEEEcCCC--CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEE
Confidence            455667777778899999887654  459999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEecCh----hhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHH
Q 006530          103 VVRGSRSSSEELLHIYNHSESVALAVENP----EFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIID  178 (641)
Q Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~li~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (641)
                      +|+++.++.+++.++++.++++.+++++.    .+...+.+.......++.++........        .....+.+++.
T Consensus       102 v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~  173 (547)
T PRK06087        102 VPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPA--------TSSLSLSQIIA  173 (547)
T ss_pred             eccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCcCCC--------cCccCHHHHhc
Confidence            99999999999999999999999999752    2334444444445555555554332111        11234555443


Q ss_pred             hhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhH
Q 006530          179 LGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV  258 (641)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~  258 (641)
                      .....             ........+++++|+|||||||.||+|.++|+++......+...+++.++|++++.+|++|.
T Consensus       174 ~~~~~-------------~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~  240 (547)
T PRK06087        174 DYEPL-------------TTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHA  240 (547)
T ss_pred             cCCcc-------------cCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHH
Confidence            21110             01123467899999999999999999999999999888888878889999999999999999


Q ss_pred             HHHHH-hHhhhhcCeeEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHH
Q 006530          259 YERAC-GYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYT  334 (641)
Q Consensus       259 ~g~~~-~~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (641)
                      +++.. .+.++..|+++++.   ++..+++.++++++++++++|.++..++......                       
T Consensus       241 ~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~-----------------------  297 (547)
T PRK06087        241 TGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQ-----------------------  297 (547)
T ss_pred             HHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccC-----------------------
Confidence            99865 55668889999885   5788999999999999999888777665432110                       


Q ss_pred             HHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhHHHHHHHc
Q 006530          335 AFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAI  414 (641)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l~~~~~~~  414 (641)
                                                                          ...++++|.+++||+++++.+.+.....
T Consensus       298 ----------------------------------------------------~~~~~~lr~i~~gG~~~~~~~~~~~~~~  325 (547)
T PRK06087        298 ----------------------------------------------------PADLSALRFFLCGGTTIPKKVARECQQR  325 (547)
T ss_pred             ----------------------------------------------------CCCCCCeEEEEEcCCCCCHHHHHHHHHc
Confidence                                                                0233456999999999999986666667


Q ss_pred             CCeeeeccccccccCeeeecCCCC--CcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhh
Q 006530          415 GVKVQVGYGLTESSPVIAARRPTC--NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ  492 (641)
Q Consensus       415 ~~~v~~~yG~tE~~~~~~~~~~~~--~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~  492 (641)
                      |.++++.||+||++..........  ...+++|.|++++.++++| +++.+++.|+.|||+++|+.++.||+++++.+..
T Consensus       326 ~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~  404 (547)
T PRK06087        326 GIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVD-EARKTLPPGCEGEEASRGPNVFMGYLDEPELTAR  404 (547)
T ss_pred             CCcEEEEecccccCCccccCCCcchhhcCCcCCccCCCceEEEEc-CCCCCCcCCCcceEEEecccccccccCCHHHHHH
Confidence            999999999999987765544322  2345789999999999999 5678899999999999999999999999999988


Q ss_pred             ccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC----
Q 006530          493 ALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----  568 (641)
Q Consensus       493 ~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----  568 (641)
                      .|..+|||+|||++++++          +|.++++||.+|+|+. +|++|+|.+||+.+.++|+|.+++|++.+++    
T Consensus       405 ~~~~~g~~~TGDl~~~~~----------~g~l~i~GR~~d~i~~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~  473 (547)
T PRK06087        405 ALDEEGWYYSGDLCRMDE----------AGYIKITGRKKDIIVR-GGENISSREVEDILLQHPKIHDACVVAMPDERLGE  473 (547)
T ss_pred             HhCCCCCcCcCceEEECC----------CCCEEEEecchhhhhc-CCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCc
Confidence            887789999999999999          8999999999999996 9999999999999999999999999998654    


Q ss_pred             ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHH-HHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          569 RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLY-GELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       569 ~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                      .+.++|+++.+               ....+.+++.++++ +.++.|+     .|.+|.++++.|.+.+||+.
T Consensus       474 ~~~~~v~~~~~---------------~~~~~~~~~~~~~~~~~l~~~~-----~P~~i~~v~~iP~t~sGK~~  526 (547)
T PRK06087        474 RSCAYVVLKAP---------------HHSLTLEEVVAFFSRKRVAKYK-----YPEHIVVIDKLPRTASGKIQ  526 (547)
T ss_pred             eEEEEEEECCC---------------CCCCCHHHHHHHHHhccccccC-----CCeEEEEeccCCCCCCCcCc
Confidence            45677776531               12345677887775 4577777     88899999999999999973

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=2.1e-57  Score=517.74  Aligned_cols=506  Identities=15%  Similarity=0.132  Sum_probs=378.9

Q ss_pred             hhhhhhhHHHHHhhhhh----hhhhhhhhcccCC-----ceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChh
Q 006530           17 LDYHRHGFRVFTRNCVD----AVATRIRISRRNH-----RFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCR   87 (641)
Q Consensus        17 ~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~-----~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e   87 (641)
                      .+||.....+.++++.+    +.|+++|++..+.     .++++||+||.++++++|+.|.+.|+++||+|+++++|+++
T Consensus       166 ~~wf~g~~ln~~~~~l~~~~~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e  245 (728)
T PLN03052        166 GQWLPGAVLNVAECCLTPKPSKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVH  245 (728)
T ss_pred             CEECCCCEeEHHHHHHHHHhccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH
Confidence            35666655555555443    4578999876532     46889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCceEEEecChhh-----HHHHHHhhcccccccEEEEEeCCCCCCCC
Q 006530           88 WLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVALAVENPEF-----FNRIAETLCSKAAMRFIILLWGKKSSVAP  162 (641)
Q Consensus        88 ~i~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  162 (641)
                      +++++|||+++|++++|+++.++.+++.+++++++++++|+++...     ............  ..++++.........
T Consensus       246 ~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~--~~~iv~~~~~~~~~~  323 (728)
T PLN03052        246 AVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKA--PKAIVLPADGKSVRV  323 (728)
T ss_pred             HHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcC--CcEEEEeCCCCcccc
Confidence            9999999999999999999999999999999999999999986311     011111111111  123333221111000


Q ss_pred             CccCCCCcccHHHHHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcC
Q 006530          163 DIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP  242 (641)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~  242 (641)
                      ..  ......|++++..........        ........++++++|+|||||||.||||+++|.+++.........++
T Consensus       324 ~~--~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~  393 (728)
T PLN03052        324 KL--REGDMSWDDFLARANGLRRPD--------EYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLD  393 (728)
T ss_pred             cc--ccCCccHHHHHhccccccccc--------cccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcC
Confidence            00  012356777665321100000        01112235689999999999999999999999998877766666678


Q ss_pred             CCCCCEEEEECChhhHHHHHHhHhhhhcCeeEEecc----hHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHH
Q 006530          243 AENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA----VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAA  318 (641)
Q Consensus       243 ~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~  318 (641)
                      +.++|+++++.|+.|+++....+.+|..|+++++.+    +..+++.++++++|++..+|+++..+.+.....       
T Consensus       394 l~~~d~~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~-------  466 (728)
T PLN03052        394 IRKGDIVCWPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMA-------  466 (728)
T ss_pred             CCCCcEEEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcc-------
Confidence            899999999999999999877778899999999853    467999999999999999999998775421000       


Q ss_pred             HHHHHHHHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEe
Q 006530          319 RRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVS  398 (641)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~  398 (641)
                                                                                          ..+++++|.+++
T Consensus       467 --------------------------------------------------------------------~~dlssLr~i~s  478 (728)
T PLN03052        467 --------------------------------------------------------------------GLDWSSIRCFGS  478 (728)
T ss_pred             --------------------------------------------------------------------cCChhheeEEEe
Confidence                                                                                023455699999


Q ss_pred             ecCCCChhHHHHH-HHcC-CeeeeccccccccCeeeec-CCCCCcccccccCcCCcEEEEeeCCCCccCCCCC--CceEE
Q 006530          399 GGGSLPMHIDLFY-EAIG-VKVQVGYGLTESSPVIAAR-RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGS--KGIVK  473 (641)
Q Consensus       399 gG~~l~~~l~~~~-~~~~-~~v~~~yG~tE~~~~~~~~-~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~--~Gel~  473 (641)
                      ||++++++...+. ..++ .++.+.||+||+++.+... +.....++++|.|.+|++++|+| +++++++.|+  .|||+
T Consensus       479 ~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~v~d-~~g~~v~~g~~~~GEL~  557 (728)
T PLN03052        479 TGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQPQAFAAFSTPAMGCKLFILD-DSGNPYPDDAPCTGELA  557 (728)
T ss_pred             cCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCCCCCCCCCccccCCCCceEEEEC-CCCCCCCCCCCceEEEE
Confidence            9999998875444 4444 5799999999987644332 22234567899999999999999 5688999885  69999


Q ss_pred             EecCc--ccccccCCchhhhhccC------CCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccH
Q 006530          474 VRGSQ--VMQGYFKNPSATKQALD------EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPL  545 (641)
Q Consensus       474 v~g~~--~~~gY~~~~~~~~~~~~------~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~  545 (641)
                      ++++.  ...+|+++.. ...-|.      ...||+|||++++++          ||.++|+||.||+|++ +|++|+|.
T Consensus       558 v~~~~~~~~~~~~~~~~-~~~yf~~~p~~~g~~~~~tGDl~~~d~----------dG~l~i~GR~Dd~I~~-~G~rI~~~  625 (728)
T PLN03052        558 LFPLMFGASSTLLNADH-YKVYFKGMPVFNGKILRRHGDIFERTS----------GGYYRAHGRADDTMNL-GGIKVSSV  625 (728)
T ss_pred             EeCCCCCCCccccCchh-hhhhhhcCCCCCCCEEEecCceEEECC----------CCeEEEEecCCCEEee-CCEEeCHH
Confidence            98653  3356666532 222221      223899999999999          9999999999999997 99999999


Q ss_pred             HhHHHHh-cCcccceEEEEecCC-----CceEEEEecC--HHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhcc
Q 006530          546 ELEEAAL-RSSLIRQIVVIGQDQ-----RRPGAIIVPD--KEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSK  617 (641)
Q Consensus       546 ~iE~~l~-~~p~V~~~~v~g~~~-----~~~~a~vv~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~  617 (641)
                      |||+++. .||+|.|++|+|.++     +.+.++|+++  ++                .+.+.++|++++++.|++...+
T Consensus       626 EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~g----------------~~~~~~~L~~~i~~~i~~~l~~  689 (728)
T PLN03052        626 EIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPG----------------SNPDLNELKKIFNSAIQKKLNP  689 (728)
T ss_pred             HHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCCC----------------CCCCHHHHHHHHHHHHHhhcCC
Confidence            9999995 799999999999754     4577888876  22                2345678888888777776544


Q ss_pred             CCCccccEEEecCCCCCCCCcc
Q 006530          618 CSFQIGPIHVVDEPFTVNFLCL  639 (641)
Q Consensus       618 ~~~~~~~i~~~~~~~~~~~~~l  639 (641)
                      .. +|++|+++++.|.+.|||+
T Consensus       690 ~~-~p~~i~~v~~lP~T~sGKi  710 (728)
T PLN03052        690 LF-KVSAVVIVPSFPRTASNKV  710 (728)
T ss_pred             cc-CCCEEEEcCCCCCCCchHH
Confidence            33 7889999999999999997

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.5e-57  Score=504.76  Aligned_cols=491  Identities=20%  Similarity=0.254  Sum_probs=385.1

Q ss_pred             HHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEE
Q 006530           24 FRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINV  103 (641)
Q Consensus        24 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v  103 (641)
                      +..+++.++..+|+++|+..++   +++||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus        12 l~~~l~~~a~~~p~~~a~~~~~---~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~G~~~v   88 (540)
T PRK06164         12 LASLLDAHARARPDAVALIDED---RPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVI   88 (540)
T ss_pred             HHHHHHHHHHhCCCCeEEecCC---CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEE
Confidence            4455566667788888887554   4599999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCceEEEecChh----hHHHHHHhhcc-cccccEEEEEeCCCCCCCCCccCCCCcccHHHHHH
Q 006530          104 VRGSRSSSEELLHIYNHSESVALAVENPE----FFNRIAETLCS-KAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIID  178 (641)
Q Consensus       104 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~----~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (641)
                      |+++..+.+++.++++.++++.+++++..    +...+...... ...++.++...++.......     ....+.++..
T Consensus        89 ~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  163 (540)
T PRK06164         89 AVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAP-----APGARVQLFA  163 (540)
T ss_pred             ecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCCCC-----Cccccccccc
Confidence            99999999999999999999999997532    11222221111 12344444443111110000     0011111111


Q ss_pred             hhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhH
Q 006530          179 LGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV  258 (641)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~  258 (641)
                      ........         ........++++++++|||||||.||+|.+||+++...+..+...+++.+++++++.+|++|.
T Consensus       164 ~~~~~~~~---------~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~  234 (540)
T PRK06164        164 LPDPAPPA---------AAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGV  234 (540)
T ss_pred             ccccCCcc---------cccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCchhH
Confidence            10000000         000123356889999999999999999999999999998888888899999999999999999


Q ss_pred             HHHHHhHhhhhcCeeEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHH
Q 006530          259 YERACGYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTA  335 (641)
Q Consensus       259 ~g~~~~~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (641)
                      +|+...+.++..|+++++.   ++..+++.++++++|+++++|.++..+.+....                         
T Consensus       235 ~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~~-------------------------  289 (540)
T PRK06164        235 FGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAGE-------------------------  289 (540)
T ss_pred             HHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhhcc-------------------------
Confidence            9998888889999999885   467899999999999999999999988764100                         


Q ss_pred             HHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeec-CCCChhHHHHHHHc
Q 006530          336 FKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGG-GSLPMHIDLFYEAI  414 (641)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG-~~l~~~l~~~~~~~  414 (641)
                                                                         ...+.+++.+..+| .+.+..+.++....
T Consensus       290 ---------------------------------------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  318 (540)
T PRK06164        290 ---------------------------------------------------RADFPSARLFGFASFAPALGELAALARAR  318 (540)
T ss_pred             ---------------------------------------------------cCCCcceeeeeeccCCcchHHHHHHHhhc
Confidence                                                               02333446655554 45555665555555


Q ss_pred             CCeeeeccccccccCeeeecCCCC---CcccccccCc-CCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhh
Q 006530          415 GVKVQVGYGLTESSPVIAARRPTC---NVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSAT  490 (641)
Q Consensus       415 ~~~v~~~yG~tE~~~~~~~~~~~~---~~~~~~G~~~-~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~  490 (641)
                      +.++++.||+||++..+.......   ....+.|.++ ++++++|+|++++.+++.|+.||||++|++++.||+++++.+
T Consensus       319 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t  398 (540)
T PRK06164        319 GVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDAT  398 (540)
T ss_pred             CCceecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcCCCCCCeeEEEEecccccccccCCchhh
Confidence            899999999999987665544322   2234567775 789999999888999999999999999999999999999999


Q ss_pred             hhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecC---C
Q 006530          491 KQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD---Q  567 (641)
Q Consensus       491 ~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~---~  567 (641)
                      .+.|..+|||+|||+|++++          +|.+++.||.+|+|++ +|++|+|.+||+.|.+||+|.+++|++.+   .
T Consensus       399 ~~~~~~~~~~~TGDl~~~~~----------~g~l~~~GR~~~~i~~-~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~~~~  467 (540)
T PRK06164        399 ARALTDDGYFRTGDLGYTRG----------DGQFVYQTRMGDSLRL-GGFLVNPAEIEHALEALPGVAAAQVVGATRDGK  467 (540)
T ss_pred             hhcccCCCceecCCeEEEcC----------CceEEEEeecCCeEEE-CCEEcCHHHHHHHHHhCCCceeEEEEecCCCCc
Confidence            99998899999999999999          8999999999999998 99999999999999999999999999954   3


Q ss_pred             CceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCC---cc
Q 006530          568 RRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFL---CL  639 (641)
Q Consensus       568 ~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~---~l  639 (641)
                      +.+.++++++++                ...+.+++.++++++++.|+     .|+.|.++++.|.+.+|   |+
T Consensus       468 ~~~~~~vv~~~~----------------~~~~~~~l~~~~~~~l~~~~-----~P~~i~~~~~~P~t~~g~~~Ki  521 (540)
T PRK06164        468 TVPVAFVIPTDG----------------ASPDEAGLMAACREALAGFK-----VPARVQVVEAFPVTESANGAKI  521 (540)
T ss_pred             eeEEEEEEeCCC----------------CCCCHHHHHHHHHhhcccCc-----CCcEEEEecCCCCCCCCccccc
Confidence            467788887643                34577899999999999998     77789999999999888   76

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.4e-57  Score=497.47  Aligned_cols=457  Identities=21%  Similarity=0.245  Sum_probs=372.9

Q ss_pred             HHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEEec
Q 006530           26 VFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVR  105 (641)
Q Consensus        26 ~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v~l  105 (641)
                      .+.++++++.|+++|+...+.   ++||.||.++++++|+.|.+.|. +|++|+|+++|+++++++++||+++|++++|+
T Consensus         5 ~~~~~~a~~~p~~~a~~~~~~---~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~l   80 (487)
T PRK07638          5 KEYKKHASLQPNKIAIKENDR---VLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGAAMAGWTCVPL   80 (487)
T ss_pred             HHHHHHHHhCCCCeEEecCCc---EeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHHHHcCeEEEec
Confidence            445556677899999887664   59999999999999999999885 89999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhhhc
Q 006530          106 GSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRK  185 (641)
Q Consensus       106 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (641)
                      ++.++.+++.++++.++++.+++++ .....+...     . ..++..                 ..+.+........  
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~vi~~~-~~~~~~~~~-----~-~~~~~~-----------------~~~~~~~~~~~~~--  134 (487)
T PRK07638         81 DIKWKQDELKERLAISNADMIVTER-YKLNDLPDE-----E-GRVIEI-----------------DEWKRMIEKYLPT--  134 (487)
T ss_pred             CccCCHHHHHHHHHhCCCCEEEEec-ccccchhhc-----c-ceEEEe-----------------hhhhhhhhhcccc--
Confidence            9999999999999999999999986 222222110     0 011111                 1111111110000  


Q ss_pred             ccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHHHhH
Q 006530          186 AFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGY  265 (641)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~  265 (641)
                                 ........+++++++|||||||.||+|.++|++++..+......+++.++|+++...|++|..++...+
T Consensus       135 -----------~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~~~~  203 (487)
T PRK07638        135 -----------YAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAI  203 (487)
T ss_pred             -----------ccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHHHHH
Confidence                       011122356789999999999999999999999998888888888899999999999999998877778


Q ss_pred             hhhhcCeeEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhHhcc
Q 006530          266 FIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEG  342 (641)
Q Consensus       266 ~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (641)
                      .++..|+++++.   ++..+++.++++++|++.++|+++..+.....                                 
T Consensus       204 ~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------------------  250 (487)
T PRK07638        204 STLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENR---------------------------------  250 (487)
T ss_pred             HHHccCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC---------------------------------
Confidence            889999999985   58899999999999999999999988765300                                 


Q ss_pred             cccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHc-CCeeee
Q 006530          343 FCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQV  420 (641)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~-~~~v~~  420 (641)
                                                                    ...+.+.++++|++++..+ .++.+.+ +.++++
T Consensus       251 ----------------------------------------------~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~  284 (487)
T PRK07638        251 ----------------------------------------------VIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYE  284 (487)
T ss_pred             ----------------------------------------------cCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEE
Confidence                                                          0011255678888898887 5555556 789999


Q ss_pred             ccccccccCeeeecCCC-CCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccCCCCc
Q 006530          421 GYGLTESSPVIAARRPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGW  499 (641)
Q Consensus       421 ~yG~tE~~~~~~~~~~~-~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~  499 (641)
                      .||+||++.++...... ...++++|.|+++++++|+| +++.++++|+.|||+++|+.++.||++++..+.+.+ .+||
T Consensus       285 ~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~  362 (487)
T PRK07638        285 FYGASELSFVTALVDEESERRPNSVGRPFHNVQVRICN-EAGEEVQKGEIGTVYVKSPQFFMGYIIGGVLARELN-ADGW  362 (487)
T ss_pred             EecCCccCceEEecccccCCCCCCCCcccCCcEEEEEC-CCCCCCCCCCCeEEEEecccceeeecCCHHHHhhhc-cCCc
Confidence            99999998776654422 34567899999999999999 568899999999999999999999999998776655 6899


Q ss_pred             cccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC----ceEEEEe
Q 006530          500 LNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIV  575 (641)
Q Consensus       500 ~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----~~~a~vv  575 (641)
                      |+|||+|++++          +|.+++.||++|+|++ +|++|+|.+||+.+.+||+|.+|+|++.+++    .+.++|+
T Consensus       363 ~~TGDl~~~d~----------~g~l~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~  431 (487)
T PRK07638        363 MTVRDVGYEDE----------EGFIYIVGREKNMILF-GGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIK  431 (487)
T ss_pred             EecCccEeEcC----------CCeEEEEecCCCeEEe-CCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEE
Confidence            99999999999          9999999999999997 9999999999999999999999999998775    3445554


Q ss_pred             cCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          576 PDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                      .                    ..+.+++++++++.++.|+     +|++|+++++.|.+.+||+.
T Consensus       432 ~--------------------~~~~~~l~~~~~~~l~~~~-----~p~~i~~v~~iP~t~~GKv~  471 (487)
T PRK07638        432 G--------------------SATKQQLKSFCLQRLSSFK-----IPKEWHFVDEIPYTNSGKIA  471 (487)
T ss_pred             C--------------------CCCHHHHHHHHHHHhhccc-----CCcEEEEecccCCCCccccc
Confidence            2                    2466889999999999998     77889999999999999973

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.9e-57  Score=505.10  Aligned_cols=493  Identities=23%  Similarity=0.346  Sum_probs=392.4

Q ss_pred             hHHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q 006530           23 GFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN  102 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~  102 (641)
                      .+...+++.+.++|+++|++..++. +++||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        19 ~l~~~l~~~~~~~p~~~a~~~~~~~-~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~   97 (558)
T PRK12583         19 TIGDAFDATVARFPDREALVVRHQA-LRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAIL   97 (558)
T ss_pred             cHHHHHHHHHHHCCCCeEEEecCCC-cEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhhCCEE
Confidence            4566677777788899888764432 569999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEecCh----hhHHHHHHhhcc-------------cccccEEEEEeCCCCCCCCCcc
Q 006530          103 VVRGSRSSSEELLHIYNHSESVALAVENP----EFFNRIAETLCS-------------KAAMRFIILLWGKKSSVAPDIV  165 (641)
Q Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~li~~~~----~~~~~~~~~~~~-------------~~~~~~~v~~~~~~~~~~~~~~  165 (641)
                      +++++.++.+++.+++++++++.+++++.    .+...+.+....             .+.++.++......        
T Consensus        98 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  169 (558)
T PRK12583         98 VNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAP--------  169 (558)
T ss_pred             EecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCCC--------
Confidence            99999999999999999999999999752    122222222221             11222333222111        


Q ss_pred             CCCCcccHHHHHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCC
Q 006530          166 EEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAEN  245 (641)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~  245 (641)
                       ......|+++...+.......       .........++++++++|||||||.||+|.++|+++.+.+......+++.+
T Consensus       170 -~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~~  241 (558)
T PRK12583        170 -PPGFLAWHELQARGETVSREA-------LAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTE  241 (558)
T ss_pred             -CccccchHhhhhccccccccc-------ccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCCC
Confidence             012234555443321110000       001123346788999999999999999999999999998888888889999


Q ss_pred             CCEEEEECChhhHHHHHH-hHhhhhcCeeEEec----chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHH
Q 006530          246 GDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARR  320 (641)
Q Consensus       246 ~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~  320 (641)
                      +|++++.+|++|.+|... .+.++..|+++++.    ++..++..++++++|++.++|+++..+........        
T Consensus       242 ~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~--------  313 (558)
T PRK12583        242 HDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGN--------  313 (558)
T ss_pred             CCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccC--------
Confidence            999999999999999876 45568889988863    57788999999999999999999876653211100        


Q ss_pred             HHHHHHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeec
Q 006530          321 VVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGG  400 (641)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG  400 (641)
                                                                                         ..+.++|.+++||
T Consensus       314 -------------------------------------------------------------------~~~~~lr~i~~~G  326 (558)
T PRK12583        314 -------------------------------------------------------------------FDLSSLRTGIMAG  326 (558)
T ss_pred             -------------------------------------------------------------------CCchhheEEEecC
Confidence                                                                               1223459999999


Q ss_pred             CCCChhH-HHHHHHcC-CeeeeccccccccCeeeecCCC---CCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEe
Q 006530          401 GSLPMHI-DLFYEAIG-VKVQVGYGLTESSPVIAARRPT---CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR  475 (641)
Q Consensus       401 ~~l~~~l-~~~~~~~~-~~v~~~yG~tE~~~~~~~~~~~---~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~  475 (641)
                      +++++.+ +.+.+.++ ..+++.||+||++.++..+...   ...+.++|.|.+++.++|+|++ +.+++.|+.|||+++
T Consensus       327 ~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~-~~~~~~g~~Gel~v~  405 (558)
T PRK12583        327 APCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPD-GATVPRGEIGELCTR  405 (558)
T ss_pred             CCCCHHHHHHHHHHcCCcceeccccccccccceeccCcccccccccCCCCccCCCCeEEEECCC-CCCCCCCCeeEEEEE
Confidence            9999987 55666675 5799999999998776654322   2346789999999999999976 889999999999999


Q ss_pred             cCcccccccCCchhhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCc
Q 006530          476 GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSS  555 (641)
Q Consensus       476 g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p  555 (641)
                      |+.++.||++++..+...|..++||+|||+|++++          ||.+++.||++|+|+. +|.+|+|.+||+.+.+||
T Consensus       406 g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~----------dg~l~i~GR~~~~i~~-~G~~v~~~~IE~~l~~~~  474 (558)
T PRK12583        406 GYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDE----------QGYVRIVGRSKDMIIR-GGENIYPREIEEFLFTHP  474 (558)
T ss_pred             eCccchhhcCChHHHHhhcCCCCCeeccceEEECC----------CccEEEEecccceeEE-CCEEeCHHHHHHHHHhCC
Confidence            99999999999999988887789999999999999          8999999999999997 999999999999999999


Q ss_pred             ccceEEEEecCCC----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCC
Q 006530          556 LIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEP  631 (641)
Q Consensus       556 ~V~~~~v~g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~  631 (641)
                      +|.+++|++.+++    .+.++|+++++                ...+.++++++++++|+.|+     .+.+|+++++.
T Consensus       475 ~v~~~~v~~~~~~~~~~~~~~~v~~~~~----------------~~~~~~~i~~~~~~~L~~~~-----~P~~i~~v~~l  533 (558)
T PRK12583        475 AVADVQVFGVPDEKYGEEIVAWVRLHPG----------------HAASEEELREFCKARIAHFK-----VPRYFRFVDEF  533 (558)
T ss_pred             CeeEEEEEeeecCCCCcEEEEEEEECCC----------------CCCCHHHHHHHHHhhcccCc-----CCcEEEEeccC
Confidence            9999999997654    46677776542                23567889999999999988     77889999999


Q ss_pred             CCCCCCccc
Q 006530          632 FTVNFLCLA  640 (641)
Q Consensus       632 ~~~~~~~l~  640 (641)
                      |.+.+||+.
T Consensus       534 P~t~sGK~~  542 (558)
T PRK12583        534 PMTVTGKVQ  542 (558)
T ss_pred             CCCCCCCcc
Confidence            999999973

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=2.9e-57  Score=505.85  Aligned_cols=483  Identities=22%  Similarity=0.339  Sum_probs=383.0

Q ss_pred             HHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEE
Q 006530           24 FRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINV  103 (641)
Q Consensus        24 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v  103 (641)
                      +..++.+.+..+|+++|+.+..+. +.+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus        30 ~~~~l~~~a~~~p~~~a~~~~~~~-~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v  108 (546)
T PLN02330         30 LPDFVLQDAELYADKVAFVEAVTG-KAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFS  108 (546)
T ss_pred             HHHHHhhhhhcCCCccEEEecCCC-CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEec
Confidence            445555666778899888754222 5699999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhh
Q 006530          104 VRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRES  183 (641)
Q Consensus       104 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (641)
                      |+++..+.+++.++++.++++.+++++ .....+...     ... ++.+.....         .....|.+++......
T Consensus       109 pl~~~~~~~~l~~~l~~~~~~~~i~~~-~~~~~~~~~-----~~~-~i~~~~~~~---------~~~~~~~~~~~~~~~~  172 (546)
T PLN02330        109 GANPTALESEIKKQAEAAGAKLIVTND-TNYGKVKGL-----GLP-VIVLGEEKI---------EGAVNWKELLEAADRA  172 (546)
T ss_pred             cCCccCCHHHHHHHHHhcCCeEEEEcc-chhhhHhhc-----CCc-EEEecCCCC---------CCcccHHHHHhhcccc
Confidence            999999999999999999999999986 444444321     112 222221110         1234577766543221


Q ss_pred             hcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcC--CCCCCEEEEECChhhHHHH
Q 006530          184 RKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP--AENGDKFLSMLPPWHVYER  261 (641)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~--~~~~d~~l~~~pl~~~~g~  261 (641)
                      ...          .......++++++++|||||||.||||.++|+++...+........  ....++.+..+|++|.+++
T Consensus       173 ~~~----------~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~  242 (546)
T PLN02330        173 GDT----------SDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGI  242 (546)
T ss_pred             Ccc----------cccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChHHHHHH
Confidence            110          1123345789999999999999999999999999876654221111  1234688999999999988


Q ss_pred             HH-hHhhhhcCeeEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHH
Q 006530          262 AC-GYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFK  337 (641)
Q Consensus       262 ~~-~~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (641)
                      .. .+.++..|+++++.   ++..+++.++++++|++.++|+++..+........                         
T Consensus       243 ~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-------------------------  297 (546)
T PLN02330        243 TGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEE-------------------------  297 (546)
T ss_pred             HHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccc-------------------------
Confidence            65 45668889988874   57889999999999999999999988765311100                         


Q ss_pred             hHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcC--CceeEEeecCCCChhH-HHHHHHc
Q 006530          338 RIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG--ISKAGVSGGGSLPMHI-DLFYEAI  414 (641)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~r~i~~gG~~l~~~l-~~~~~~~  414 (641)
                                                                        ..+.  .+|.+++||+++++.+ +.+.+.+
T Consensus       298 --------------------------------------------------~~~~~~~l~~i~~~g~~l~~~~~~~~~~~~  327 (546)
T PLN02330        298 --------------------------------------------------FDLSKLKLQAIMTAAAPLAPELLTAFEAKF  327 (546)
T ss_pred             --------------------------------------------------cccchheeeeEEEcCCcCCHHHHHHHHHHc
Confidence                                                              0011  2388999999999988 4455566


Q ss_pred             -CCeeeeccccccccCeeeecCCC-----CCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCch
Q 006530          415 -GVKVQVGYGLTESSPVIAARRPT-----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPS  488 (641)
Q Consensus       415 -~~~v~~~yG~tE~~~~~~~~~~~-----~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~  488 (641)
                       +.++++.||+||++.+.......     ....+++|.|+++++++|+|+++++++|.|+.|||+++|+.++.||++++.
T Consensus       328 ~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~~Gel~v~g~~~~~gy~~~~~  407 (546)
T PLN02330        328 PGVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKE  407 (546)
T ss_pred             CCCeEEecccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCCCCceEEEEecchhhhhhccCcc
Confidence             89999999999987654432211     123468999999999999998888999999999999999999999999999


Q ss_pred             hhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC
Q 006530          489 ATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR  568 (641)
Q Consensus       489 ~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~  568 (641)
                      .+...++.+|||+|||+|++++          ||.+++.||.+|+|++ +|++|+|.+||+.+.++|+|.+++|++.+++
T Consensus       408 ~~~~~~~~~g~~~TGD~~~~~~----------dG~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~  476 (546)
T PLN02330        408 ETDRTIDEDGWLHTGDIGYIDD----------DGDIFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAVVPLPDE  476 (546)
T ss_pred             chhhhccCCCceecccEEEEeC----------CCcEEEEechHHhhhc-CCEEECHHHHHHHHHhCCchheEEEEecccc
Confidence            9988888899999999999999          8999999999999997 8999999999999999999999999997654


Q ss_pred             ----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          569 ----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       569 ----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                          .+.++|++.++                ...+.++++++++++|+.|+     .|+.|.++++.|.+.+||+.
T Consensus       477 ~~g~~~~a~v~~~~~----------------~~~~~~~l~~~~~~~l~~~~-----~p~~~~~v~~iP~t~~GK~~  531 (546)
T PLN02330        477 EAGEIPAACVVINPK----------------AKESEEDILNFVAANVAHYK-----KVRVVQFVDSIPKSLSGKIM  531 (546)
T ss_pred             ccCceeEEEEEECCC----------------CCCCHHHHHHHHHHhccccc-----CceEEEEeccCCCCCCccee
Confidence                46677776542                23466889999999999998     77889999999999999973

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=6.8e-57  Score=499.57  Aligned_cols=484  Identities=21%  Similarity=0.286  Sum_probs=394.2

Q ss_pred             HHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEEec
Q 006530           26 VFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVR  105 (641)
Q Consensus        26 ~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v~l  105 (641)
                      +.++..++.+|+++++...+.   ++||+||.+++.++|+.|.+.|+.+||+|+++++|+++++++++||+++|++++|+
T Consensus         4 ~~~~~~~~~~p~~~a~~~~~~---~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l   80 (515)
T TIGR03098         4 HLLEDAAARLPDATALVHHDR---TLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPI   80 (515)
T ss_pred             HHHHHHHHHCCCCeEEEECCc---eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEEeC
Confidence            444556667888888777653   59999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhhhc
Q 006530          106 GSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRK  185 (641)
Q Consensus       106 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (641)
                      ++..+.+++..+++.++++.+++++ .....+.......+.++.++.+.+......    .......|+++......   
T Consensus        81 ~~~~~~~~~~~~l~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---  152 (515)
T TIGR03098        81 NPLLKAEQVAHILADCNVRLLVTSS-ERLDLLHPALPGCHDLRTLILVGEPAHASE----GGGESPSWPKLLALGDA---  152 (515)
T ss_pred             CCCCCHHHHHHHHHcCCCeEEEEcc-chhhhhHhhhhcccccceEEEecCcccccC----CccccccHHHhhccccc---
Confidence            9999999999999999999999985 444555444444455555555543221100    01233456665433211   


Q ss_pred             ccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHHHhH
Q 006530          186 AFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGY  265 (641)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~  265 (641)
                                 ........+++++++|||||||.||+|.+||+++...+......+++.++|++++.+|++|++++...+
T Consensus       153 -----------~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~  221 (515)
T TIGR03098       153 -----------DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLT  221 (515)
T ss_pred             -----------cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHHHHH
Confidence                       011233567899999999999999999999999999888888888899999999999999999998888


Q ss_pred             hhhhcCeeEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhHhcc
Q 006530          266 FIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEG  342 (641)
Q Consensus       266 ~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (641)
                      .++..|+++++.   ++..+.+.++++++|++.++|+++..+.+....                                
T Consensus       222 ~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------------------------------  269 (515)
T TIGR03098       222 TAFYVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWP--------------------------------  269 (515)
T ss_pred             HHHHcCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhcccC--------------------------------
Confidence            889999999985   478899999999999999999999887542000                                


Q ss_pred             cccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHc-CCeeee
Q 006530          343 FCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQV  420 (641)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~-~~~v~~  420 (641)
                                                                  ...+.++|.+++||+++++.+ ..+.+.+ +..+++
T Consensus       270 --------------------------------------------~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~  305 (515)
T TIGR03098       270 --------------------------------------------ESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFL  305 (515)
T ss_pred             --------------------------------------------CCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEee
Confidence                                                        012344599999999999988 4555556 788999


Q ss_pred             ccccccccCeeeecCCC-CCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccCC---
Q 006530          421 GYGLTESSPVIAARRPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE---  496 (641)
Q Consensus       421 ~yG~tE~~~~~~~~~~~-~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~---  496 (641)
                      .||+||++......... ...++++|+|+++++++|++ +++..++.|+.|||+++|+.++.||+++++.+...|..   
T Consensus       306 ~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~~-~~~~~~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~  384 (515)
T TIGR03098       306 MYGLTEAFRSTYLPPEEVDRRPDSIGKAIPNAEVLVLR-EDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPP  384 (515)
T ss_pred             eeccccccceEecccccccCCCCCcceecCCCEEEEEC-CCCCCCCCCCceEEEEcCchhhccccCCchhhhhhhhccCC
Confidence            99999987655443322 34568999999999999999 56888999999999999999999999999888766632   


Q ss_pred             --------CCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC
Q 006530          497 --------DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR  568 (641)
Q Consensus       497 --------~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~  568 (641)
                              ++||+|||+|++++          +|++++.||.+|+|+. +|++|+|.+||+++.+||.|.+++|++.+++
T Consensus       385 ~~~~~~~~~~~~~TGD~~~~~~----------~g~l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~  453 (515)
T TIGR03098       385 RPGELHLPELAVWSGDTVRRDE----------EGFLYFVGRRDEMIKT-SGYRVSPTEVEEVAYATGLVAEAVAFGVPDP  453 (515)
T ss_pred             ccccccccccceeccceEEEcC----------CceEEEEeccccceec-CCEEeCHHHHHHHHhcCCCeeEEEEEeccCc
Confidence                    34899999999999          8999999999999997 9999999999999999999999999997654


Q ss_pred             ----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          569 ----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       569 ----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                          .+.+++++..+                ...+.++++++++++|+.++     +|+.|+++++.|.+.+||+.
T Consensus       454 ~~g~~~~~~~~~~~~----------------~~~~~~~l~~~l~~~l~~~~-----~p~~i~~v~~iP~t~~GK~~  508 (515)
T TIGR03098       454 TLGQAIVLVVTPPGG----------------EELDRAALLAECRARLPNYM-----VPALIHVRQALPRNANGKID  508 (515)
T ss_pred             ccCceEEEEEEeCCC----------------CCCCHHHHHHHHHhhCcccc-----CCCEEEEeccCCCCCCCCCc
Confidence                46666664322                34567899999999999998     77889999999999999974

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.3e-57  Score=506.77  Aligned_cols=496  Identities=25%  Similarity=0.368  Sum_probs=391.4

Q ss_pred             hHHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q 006530           23 GFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN  102 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~  102 (641)
                      .+.++++++++++|+++|+...+.   .+||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        33 ~l~~~~~~~~~~~p~~~a~~~~~~---~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  109 (573)
T PRK05605         33 TLVDLYDNAVARFGDRPALDFFGA---TTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVV  109 (573)
T ss_pred             CHHHHHHHHHHHCCCCeEEEeCCC---cccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence            466677788888999999887654   49999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCC--CC---CCC-------------Cc
Q 006530          103 VVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKK--SS---VAP-------------DI  164 (641)
Q Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~---~~~-------------~~  164 (641)
                      +|++|.++.+++.+++++++++.+|+++ .....+.+.... ...+.++......  ..   ...             ..
T Consensus       110 v~l~~~~~~~~l~~~l~~~~~~~ii~~~-~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (573)
T PRK05605        110 VEHNPLYTAHELEHPFEDHGARVAIVWD-KVAPTVERLRRT-TPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAALT  187 (573)
T ss_pred             eecCcCCCHHHHHHHHhccCCcEEEech-hhHHHHHhhhhc-cccceeEeeecccccccccccccccccccccccccccc
Confidence            9999999999999999999999999986 333333333222 1233333321100  00   000             00


Q ss_pred             cCCCCcccHHHHHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcC--
Q 006530          165 VEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP--  242 (641)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~--  242 (641)
                      ....+...|+++..........         ........++++++++|||||||.||+|.+||+++...+......+.  
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~  258 (573)
T PRK05605        188 GPAPGTVPWETLVDAAIGGDGS---------DVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGL  258 (573)
T ss_pred             cCCCcceeHHHHhhcccccccc---------ccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhcccc
Confidence            0011234555554432111000         01123356789999999999999999999999999877765444333  


Q ss_pred             CCCCCEEEEECChhhHHHHHH-hHhhhhcCeeEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHH
Q 006530          243 AENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAA  318 (641)
Q Consensus       243 ~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~  318 (641)
                      ...++++++.+|++|.+|+.. .+.++..|+++++.   ++..+++.++++++|++.++|+++..+.+......      
T Consensus       259 ~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~------  332 (573)
T PRK05605        259 GDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERG------  332 (573)
T ss_pred             CCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccC------
Confidence            234789999999999999865 45568889998874   57889999999999999999999998876432211      


Q ss_pred             HHHHHHHHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEe
Q 006530          319 RRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVS  398 (641)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~  398 (641)
                                                                                           ..++++|.+++
T Consensus       333 ---------------------------------------------------------------------~~~~~lr~i~~  343 (573)
T PRK05605        333 ---------------------------------------------------------------------VDLSGVRNAFS  343 (573)
T ss_pred             ---------------------------------------------------------------------CCchhccEEEE
Confidence                                                                                 12234599999


Q ss_pred             ecCCCChhH-HHHHHHcCCeeeeccccccccCeeeecCCC-CCcccccccCcCCcEEEEeeCCC-CccCCCCCCceEEEe
Q 006530          399 GGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPT-CNVLGSVGHPINHTEIKIVDAET-NEVLPAGSKGIVKVR  475 (641)
Q Consensus       399 gG~~l~~~l-~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~-~~~~~~~G~~~~~~~v~i~d~~~-~~~~~~g~~Gel~v~  475 (641)
                      ||++++..+ ..+.+.++..+++.||+||++.++...... ...++++|.|+++++++|+|+++ +.+++.|+.|||+++
T Consensus       344 gg~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~Gel~v~  423 (573)
T PRK05605        344 GAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVR  423 (573)
T ss_pred             CCCcCCHHHHHHHHHHhCCCeecccccchhchhhhcCCcccCCcCCccccCCCCCEEEEEcCCCCCccCCCCCeeEEEEe
Confidence            999999987 455555689999999999998776654432 23467899999999999999766 688999999999999


Q ss_pred             cCcccccccCCchhhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCc
Q 006530          476 GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSS  555 (641)
Q Consensus       476 g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p  555 (641)
                      |+.++.||++++..+.+.|. +|||+|||+|++++          +|.+++.||++|+++. +|++|+|.+||+++.+|+
T Consensus       424 ~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~----------~g~l~i~gR~dd~i~~-~G~~v~p~eIE~~l~~~~  491 (573)
T PRK05605        424 GPQVFKGYWNRPEETAKSFL-DGWFRTGDVVVMEE----------DGFIRIVDRIKELIIT-GGFNVYPAEVEEVLREHP  491 (573)
T ss_pred             cCchhhhhcCChhHhhhccc-CCCcccCCEEEEcC----------CCcEEEEeccccceee-CCEEECHHHHHHHHHhCc
Confidence            99999999999999988884 68999999999999          8999999999999997 999999999999999999


Q ss_pred             ccceEEEEecCC----CceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCC
Q 006530          556 LIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEP  631 (641)
Q Consensus       556 ~V~~~~v~g~~~----~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~  631 (641)
                      .|.+++|++.++    +.+.++|+++++                ...+.++|+++++++|+.++     .|+.|+++++.
T Consensus       492 ~i~~~~v~~~~~~~~~~~~~~~vv~~~~----------------~~~~~~~l~~~~~~~l~~~~-----~p~~i~~~~~i  550 (573)
T PRK05605        492 GVEDAAVVGLPREDGSEEVVAAVVLEPG----------------AALDPEGLRAYCREHLTRYK-----VPRRFYHVDEL  550 (573)
T ss_pred             ccceEEEEeeecccCCeEEEEEEEECCC----------------CCCCHHHHHHHHHHhCcccc-----CCcEEEEeccC
Confidence            999999999754    457778887643                34567899999999999888     77889999999


Q ss_pred             CCCCCCccc
Q 006530          632 FTVNFLCLA  640 (641)
Q Consensus       632 ~~~~~~~l~  640 (641)
                      |.+.+||+.
T Consensus       551 P~t~~GKi~  559 (573)
T PRK05605        551 PRDQLGKVR  559 (573)
T ss_pred             CCCCccccc
Confidence            999999973

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=3.8e-57  Score=511.03  Aligned_cols=478  Identities=17%  Similarity=0.229  Sum_probs=363.3

Q ss_pred             HHHHHhhhhhhhhhhhhhccc------CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHh
Q 006530           24 FRVFTRNCVDAVATRIRISRR------NHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLA   97 (641)
Q Consensus        24 ~~~~~~~~~~~~~~~~a~~~~------~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~   97 (641)
                      +..++++++.++|+++|+...      ++.++++||+||.++++++|++|.+. +++||+|+++++|++++++++|||++
T Consensus        36 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~lA~~~  114 (612)
T PRK12476         36 LISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAGFFAAIK  114 (612)
T ss_pred             HHHHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHHHHHHHH
Confidence            334555666778889887653      24567899999999999999999986 99999999999999999999999999


Q ss_pred             cCCEEEec-CCCCC--HHHHHHHHHhcCceEEEecChhhHHHHHHhhccccc--ccEEEEEeCCCCCCCCCccCCCCccc
Q 006530           98 TGAINVVR-GSRSS--SEELLHIYNHSESVALAVENPEFFNRIAETLCSKAA--MRFIILLWGKKSSVAPDIVEEIPVFS  172 (641)
Q Consensus        98 ~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~  172 (641)
                      +|++++|+ ++..+  .+++.+++++++++++++++ .....+.+.......  ...++.+++..               
T Consensus       115 aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~---------------  178 (612)
T PRK12476        115 AGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTT-AAAEAVEGFLRNLPRLRRPRVIAIDAIP---------------  178 (612)
T ss_pred             cCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcH-HHHHHHHHHHhhcccccCceEEEecccc---------------
Confidence            99999999 57766  78999999999999999985 444444443332221  12233221100               


Q ss_pred             HHHHHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcC-CCCCCEEEE
Q 006530          173 YDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP-AENGDKFLS  251 (641)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~-~~~~d~~l~  251 (641)
                           ....  ..           .......++++++|+|||||||.||||.+||+++.+.+......++ +.+++++++
T Consensus       179 -----~~~~--~~-----------~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~  240 (612)
T PRK12476        179 -----DSAG--ES-----------FVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVS  240 (612)
T ss_pred             -----cccc--cc-----------ccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEE
Confidence                 0000  00           1112346789999999999999999999999999887777666677 788899999


Q ss_pred             ECChhhHHHHHHhHhhhhcCeeEEec-------chHHHHHHHh--hhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHH
Q 006530          252 MLPPWHVYERACGYFIFSRGIELMYT-------AVRNLKDDLQ--RYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVV  322 (641)
Q Consensus       252 ~~pl~~~~g~~~~~~~l~~G~~~v~~-------~~~~~~~~i~--~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~  322 (641)
                      ++|++|.+++...+.++..|+++++.       ++..+++.++  +++++.++.+|.++..+.........         
T Consensus       241 ~~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~---------  311 (612)
T PRK12476        241 WLPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAE---------  311 (612)
T ss_pred             eCCcccccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhh---------
Confidence            99999999987766665455555443       3566788884  48899999999998877642100000         


Q ss_pred             HHHHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCC
Q 006530          323 ARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGS  402 (641)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~  402 (641)
                                                                                    .-...++++| +++||++
T Consensus       312 --------------------------------------------------------------~~~~~l~~lr-~~~gg~~  328 (612)
T PRK12476        312 --------------------------------------------------------------GDDIDLSNVV-LIIGSEP  328 (612)
T ss_pred             --------------------------------------------------------------hcCcchhHhe-EEecccC
Confidence                                                                          0001234458 8999999


Q ss_pred             CChhH-HHHHHHc---CC---eeeeccccccccCeeeecCCCC---------------------------CcccccccCc
Q 006530          403 LPMHI-DLFYEAI---GV---KVQVGYGLTESSPVIAARRPTC---------------------------NVLGSVGHPI  448 (641)
Q Consensus       403 l~~~l-~~~~~~~---~~---~v~~~yG~tE~~~~~~~~~~~~---------------------------~~~~~~G~~~  448 (641)
                      ++..+ +++.+.+   |.   .+++.||+||++..++...+..                           ...+++|+|+
T Consensus       329 ~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~  408 (612)
T PRK12476        329 VSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVA  408 (612)
T ss_pred             CCHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcC
Confidence            99987 4455545   43   4899999999876544322110                           0135789999


Q ss_pred             CCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccC------------------CCCccccCceeEEcC
Q 006530          449 NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD------------------EDGWLNTGDIGWIAP  510 (641)
Q Consensus       449 ~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~------------------~~g~~~TGDl~~~~~  510 (641)
                      ++++++|+|++++++++.|+.|||+++|++++.||+++|+.|.+.|.                  .++||+|||+|++ +
T Consensus       409 ~g~~v~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~-~  487 (612)
T PRK12476        409 RSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVY-L  487 (612)
T ss_pred             CCCEEEEEeCCCCcCCCCCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeecccccee-E
Confidence            99999999976689999999999999999999999999999988884                  1359999999987 5


Q ss_pred             CCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhc-Ccccce--EEEEecCC---CceEEEEecCHHHHHHH
Q 006530          511 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR-SSLIRQ--IVVIGQDQ---RRPGAIIVPDKEEVLMA  584 (641)
Q Consensus       511 ~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~-~p~V~~--~~v~g~~~---~~~~a~vv~~~~~~~~~  584 (641)
                                ||+|+|+||+||+|++ +|++|+|.|||++|.+ ||.|.+  ++|++.++   +.+.++|+++++.    
T Consensus       488 ----------dG~l~i~GR~~d~I~~-~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~~~~~~~~v~~~~~~----  552 (612)
T PRK12476        488 ----------DGELYITGRIADLIVI-DGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAEDNERLVIVAERAAGT----  552 (612)
T ss_pred             ----------CCEEEEEeccCcEEEE-CCcccCHHHHHHHHHHhcccccCCcEEEEEecCCCcceEEEEEEecCCc----
Confidence                      6999999999999998 9999999999999985 899999  77787764   3577787776431    


Q ss_pred             HHHcCCCCCChhhcChHHHHHHHHHHHHh-HhccCCCccccEEEec--CCCCCCCCcc
Q 006530          585 AKRLSIVHADASELSKEKTISLLYGELRK-WTSKCSFQIGPIHVVD--EPFTVNFLCL  639 (641)
Q Consensus       585 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-~~~~~~~~~~~i~~~~--~~~~~~~~~l  639 (641)
                                 ...+.+++.+++++++.. |+    ..++.+.+++  +.|.+.+||+
T Consensus       553 -----------~~~~~~~l~~~~~~~l~~~~~----~~p~~v~~v~~~~lP~t~~GKi  595 (612)
T PRK12476        553 -----------SRADPAPAIDAIRAAVSRRHG----LAVADVRLVPAGAIPRTTSGKL  595 (612)
T ss_pred             -----------ccccHHHHHHHHHHHHHHhhC----CcceEEEEECCCCcCcCCchHH
Confidence                       124668899999999885 54    2357888887  5999999997

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.9e-57  Score=499.10  Aligned_cols=460  Identities=23%  Similarity=0.295  Sum_probs=369.7

Q ss_pred             hhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEEecCCCC
Q 006530           30 NCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRS  109 (641)
Q Consensus        30 ~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v~l~~~~  109 (641)
                      .++..+|+++++.+.... +.+||.||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|++++|+++..
T Consensus         3 ~~a~~~p~~~a~~~~~~~-~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~   81 (488)
T PRK09088          3 FHARLQPQRLAAVDLALG-RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRL   81 (488)
T ss_pred             hhhhhCCCceEEEecCCC-cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCccC
Confidence            345667888887652111 4699999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhhhcccCC
Q 006530          110 SSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSD  189 (641)
Q Consensus       110 ~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (641)
                      +.+++.+++++++++.+++++. ....      .                        .....++++.........    
T Consensus        82 ~~~~~~~~~~~~~~~~ii~~~~-~~~~------~------------------------~~~~~~~~~~~~~~~~~~----  126 (488)
T PRK09088         82 SASELDALLQDAEPRLLLGDDA-VAAG------R------------------------TDVEDLAAFIASADALEP----  126 (488)
T ss_pred             CHHHHHHHHHhCCCCEEEEcch-hhcc------c------------------------ccccchhhhhhhcccccc----
Confidence            9999999999999999999852 1110      0                        001122222211110000    


Q ss_pred             CchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHHHh-Hhhh
Q 006530          190 SNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIF  268 (641)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~-~~~l  268 (641)
                             .......++++++++|||||||.||+|.+||+++...+..+.......++|++++.+|++|++++... +.++
T Consensus       127 -------~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l  199 (488)
T PRK09088        127 -------ADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVL  199 (488)
T ss_pred             -------ccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHH
Confidence                   01123456889999999999999999999999998888777777778889999999999999998764 4558


Q ss_pred             hcCeeEEec---chHHHHHHHh--hhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhHhccc
Q 006530          269 SRGIELMYT---AVRNLKDDLQ--RYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGF  343 (641)
Q Consensus       269 ~~G~~~v~~---~~~~~~~~i~--~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (641)
                      ..|+++++.   .+..++..+.  ++++|+++.+|.++..+.......                                
T Consensus       200 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~--------------------------------  247 (488)
T PRK09088        200 AVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGFD--------------------------------  247 (488)
T ss_pred             hcCCEEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcC--------------------------------
Confidence            889998875   3566666665  478999999999987775421000                                


Q ss_pred             ccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhHHHHHHHcCCeeeeccc
Q 006530          344 CLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYG  423 (641)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l~~~~~~~~~~v~~~yG  423 (641)
                                                                 ...++++|.+++||++++....+.+...|.++++.||
T Consensus       248 -------------------------------------------~~~~~~l~~~~~gG~~~~~~~~~~~~~~g~~v~~~YG  284 (488)
T PRK09088        248 -------------------------------------------AAALRHLTALFTGGAPHAAEDILGWLDDGIPMVDGFG  284 (488)
T ss_pred             -------------------------------------------ccccccceEEEecCCCCCHHHHHHHHHhCCceeeeec
Confidence                                                       0123445999999999998764433345899999999


Q ss_pred             cccccCeeeecCC---CCCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccCCCCcc
Q 006530          424 LTESSPVIAARRP---TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWL  500 (641)
Q Consensus       424 ~tE~~~~~~~~~~---~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~  500 (641)
                      +||++........   ....++++|.|.++++++|+| +++.+++.|+.|||+++|++++.||+++++.+...|+.+|||
T Consensus       285 ~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~  363 (488)
T PRK09088        285 MSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVD-DQGNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWF  363 (488)
T ss_pred             ccccccccccCCCcccccccCCccccCCCCcEEEEEC-CCCCCCcCCCceEEEEECCccchhhcCChhhhhhhhcCCCCe
Confidence            9999865433221   123567899999999999998 567889999999999999999999999999999888889999


Q ss_pred             ccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC----ceEEEEec
Q 006530          501 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVP  576 (641)
Q Consensus       501 ~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----~~~a~vv~  576 (641)
                      +|||+|++++          +|.+++.||.+|+|+. +|.+|+|.+||++|+++|+|.+++|++.+++    ...++|++
T Consensus       364 ~TGDl~~~~~----------~g~l~i~GR~~d~i~~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~  432 (488)
T PRK09088        364 RTGDIARRDA----------DGFFWVVDRKKDMFIS-GGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVP  432 (488)
T ss_pred             eecceEEEcC----------CCcEEEeccccceEEe-CCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEE
Confidence            9999999999          8999999999999997 9999999999999999999999999998764    34577776


Q ss_pred             CHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          577 DKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       577 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                      +++                .+.+.+++.++++++++.|+     .|++|+++++.|.+.+||+.
T Consensus       433 ~~~----------------~~~~~~~l~~~~~~~l~~~~-----~p~~i~~~~~iP~t~~gKi~  475 (488)
T PRK09088        433 ADG----------------APLDLERIRSHLSTRLAKYK-----VPKHLRLVDALPRTASGKLQ  475 (488)
T ss_pred             CCC----------------CCCCHHHHHHHHHhhCcCCC-----CCCEEEEcccCCCCCCCcee
Confidence            542                23467889999999998888     77889999999999999974

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=8.8e-57  Score=497.35  Aligned_cols=476  Identities=24%  Similarity=0.330  Sum_probs=385.0

Q ss_pred             HHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEEec
Q 006530           26 VFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVR  105 (641)
Q Consensus        26 ~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v~l  105 (641)
                      ++..+++ ..|+++++...++  +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|++++|+
T Consensus         7 ~~~~~~~-~~~~~~a~~~~~~--~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~v~l   83 (504)
T PRK07514          7 DALRAAF-ADRDAPFIETPDG--LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFLPL   83 (504)
T ss_pred             HHHHHHh-hCCCCeEEEeCCC--CEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEEC
Confidence            3344444 6788888766443  569999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhhhc
Q 006530          106 GSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRK  185 (641)
Q Consensus       106 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (641)
                      ++..+.+++..+++.++++.+++++ .....+....... ....++......            ..++.+....   ...
T Consensus        84 ~~~~~~~~~~~~l~~~~~~~ii~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~------------~~~~~~~~~~---~~~  146 (504)
T PRK07514         84 NTAYTLAELDYFIGDAEPALVVCDP-ANFAWLSKIAAAA-GAPHVETLDADG------------TGSLLEAAAA---APD  146 (504)
T ss_pred             CCCCCHHHHHHHHHhCCCcEEEEcc-chhHHHHHhhhcc-CCceEEEecCCC------------cccHHHhhhh---cCc
Confidence            9999999999999999999999986 4444443332221 222222222111            0122222111   100


Q ss_pred             ccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHHH-h
Q 006530          186 AFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-G  264 (641)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~-~  264 (641)
                      .          .......++++++++|||||||.||+|.+||+++...+......+++.++|+++..+|++|..++.. .
T Consensus       147 ~----------~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~  216 (504)
T PRK07514        147 D----------FETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVAT  216 (504)
T ss_pred             c----------cCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHH
Confidence            0          1123456889999999999999999999999999998888888888999999999999999999865 4


Q ss_pred             HhhhhcCeeEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhHhc
Q 006530          265 YFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYE  341 (641)
Q Consensus       265 ~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (641)
                      +.++..|+++++.   ++..+++.+  .++|.+.++|.++..+.+.....                              
T Consensus       217 ~~~l~~G~~~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~~------------------------------  264 (504)
T PRK07514        217 NVALLAGASMIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQEPRLT------------------------------  264 (504)
T ss_pred             HHHHhcCcEEEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcCCCCC------------------------------
Confidence            5668999999986   467777777  47999999999998776421100                              


Q ss_pred             ccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHcCCeeee
Q 006530          342 GFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQV  420 (641)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~~~~v~~  420 (641)
                                                                   ...++++|.+++||+++++.+ +.+.+.++.++++
T Consensus       265 ---------------------------------------------~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~  299 (504)
T PRK07514        265 ---------------------------------------------REAAAHMRLFISGSAPLLAETHREFQERTGHAILE  299 (504)
T ss_pred             ---------------------------------------------cccccceeeEEecCCCCCHHHHHHHHHHhCCccee
Confidence                                                         012344599999999999988 5555667889999


Q ss_pred             ccccccccCeeeecCCCCCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccCCCCcc
Q 006530          421 GYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWL  500 (641)
Q Consensus       421 ~yG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~  500 (641)
                      .||+||++.............+++|.|+++++++|+|++++.+++.|+.|||+++|+.++.||++++..+.+.|..++||
T Consensus       300 ~YG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~  379 (504)
T PRK07514        300 RYGMTETNMNTSNPYDGERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFF  379 (504)
T ss_pred             ecccccccccccCCccccccCcccccCCCCcEEEEEECCCCCCCCCCCceEEEEecCCccccccCCchhhhhhcccCCCe
Confidence            99999998665543333344678999999999999998889999999999999999999999999999999999778999


Q ss_pred             ccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC----ceEEEEec
Q 006530          501 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVP  576 (641)
Q Consensus       501 ~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----~~~a~vv~  576 (641)
                      +|||++++++          +|.+++.||++|+|+. +|++|+|.+||+.+.++++|.+++|++.+++    .+.+++++
T Consensus       380 ~TGDl~~~~~----------~g~~~~~GR~~~~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~  448 (504)
T PRK07514        380 ITGDLGKIDE----------RGYVHIVGRGKDLIIS-GGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVP  448 (504)
T ss_pred             eecceEEEcC----------CccEEEeccccceEEe-CCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEE
Confidence            9999999999          8999999999999997 9999999999999999999999999997654    46677776


Q ss_pred             CHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          577 DKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       577 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                      .++                ...+.++++++++++++.|+     .|++|+++++.|.+.+||+.
T Consensus       449 ~~~----------------~~~~~~~l~~~~~~~l~~~~-----~p~~i~~v~~~p~t~~gK~~  491 (504)
T PRK07514        449 KPG----------------AALDEAAILAALKGRLARFK-----QPKRVFFVDELPRNTMGKVQ  491 (504)
T ss_pred             CCC----------------CCCCHHHHHHHHHhhcccCC-----CCcEEEEeccCCCCCCccee
Confidence            542                23567889999999999988     77889999999999999973

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8.6e-57  Score=499.33  Aligned_cols=487  Identities=28%  Similarity=0.463  Sum_probs=407.9

Q ss_pred             hHHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q 006530           23 GFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN  102 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~  102 (641)
                      .+.+..++.+..+|+++|+...+..   +||+||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus         7 ~l~~~l~~~~~~~p~~~a~~~~~~~---~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G~~~   83 (521)
T PRK06187          7 TIGRILRHGARKHPDKEAVYFDGRR---TTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVL   83 (521)
T ss_pred             CHHHHHHHHHHHCCCceEEEeCCce---EcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence            3455566777788888888887755   9999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhh
Q 006530          103 VVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRE  182 (641)
Q Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (641)
                      +++++.++.+++..+++.++++.++++. .....+.+.....+.++.++...+....     .......++.+++.....
T Consensus        84 v~~~~~~~~~~~~~~i~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  157 (521)
T PRK06187         84 HPINIRLKPEEIAYILNDAEDRVVLVDS-EFVPLLAAILPQLPTVRTVIVEGDGPAA-----PLAPEVGEYEELLAAASD  157 (521)
T ss_pred             EecccCCCHHHHHHHHHhcCCeEEEEcc-hHHHHHHHHhhccCCccEEEEecCcccc-----ccccccccHHHHhhcCCc
Confidence            9999999999999999999999999985 6666676666666666666665443321     001234666666543221


Q ss_pred             hhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHH
Q 006530          183 SRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERA  262 (641)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~  262 (641)
                      .             ......+.+++++++|||||||.||++.+||+++..........+++.++|+++..+|++|.+++.
T Consensus       158 ~-------------~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  224 (521)
T PRK06187        158 T-------------FDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWG  224 (521)
T ss_pred             c-------------CCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHH
Confidence            1             122345678999999999999999999999999998888888888999999999999999999988


Q ss_pred             HhHhhhhcCeeEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhH
Q 006530          263 CGYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRI  339 (641)
Q Consensus       263 ~~~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (641)
                      ..+.++..|++++++   ++..+++.++++++|.++++|+++..+........                           
T Consensus       225 ~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~---------------------------  277 (521)
T PRK06187        225 LPYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYF---------------------------  277 (521)
T ss_pred             HHHHHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCc---------------------------
Confidence            877799999999885   47889999999999999999999998876432210                           


Q ss_pred             hcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHcCCee
Q 006530          340 YEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKV  418 (641)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~~~~v  418 (641)
                                                                      ..+.++|.+++||++++..+ ..+.+.++.++
T Consensus       278 ------------------------------------------------~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v  309 (521)
T PRK06187        278 ------------------------------------------------VDFSSLRLVIYGGAALPPALLREFKEKFGIDL  309 (521)
T ss_pred             ------------------------------------------------cCcchhhEEEEcCcCCCHHHHHHHHHHhCcch
Confidence                                                            23344589999999999988 44555569999


Q ss_pred             eeccccccccCeeeecCCCCC------cccccccCcCCcEEEEeeCCCCccCCC--CCCceEEEecCcccccccCCchhh
Q 006530          419 QVGYGLTESSPVIAARRPTCN------VLGSVGHPINHTEIKIVDAETNEVLPA--GSKGIVKVRGSQVMQGYFKNPSAT  490 (641)
Q Consensus       419 ~~~yG~tE~~~~~~~~~~~~~------~~~~~G~~~~~~~v~i~d~~~~~~~~~--g~~Gel~v~g~~~~~gY~~~~~~~  490 (641)
                      ++.||+||++.++........      ...++|.|+++++++|+|+ ++.+++.  |+.|||+++|+.++.||+++++.+
T Consensus       310 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~-~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~  388 (521)
T PRK06187        310 VQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDD-DGDELPPDGGEVGEIIVRGPWLMQGYWNRPEAT  388 (521)
T ss_pred             heeeccCccCcccccCCcccccccccccCCccccccCCeEEEEECC-CCCCCCCCCCCeeEEEEECcchhhhhcCCHHHH
Confidence            999999999877665544333      5678999999999999995 4678888  999999999999999999999999


Q ss_pred             hhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCC---
Q 006530          491 KQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ---  567 (641)
Q Consensus       491 ~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~---  567 (641)
                      .+.| .++||+|||++++++          +|.+++.||.+|++++ +|.+++|.+||+.+.++++|.+++|++.++   
T Consensus       389 ~~~~-~~~~~~tGD~~~~~~----------~g~~~~~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~  456 (521)
T PRK06187        389 AETI-DGGWLHTGDVGYIDE----------DGYLYITDRIKDVIIS-GGENIYPRELEDALYGHPAVAEVAVIGVPDEKW  456 (521)
T ss_pred             HHHh-hCCceeccceEEEcC----------CCCEEEeecccceEEc-CCeEECHHHHHHHHHhCCCceEEEEEeccCCCc
Confidence            8888 478999999999999          8999999999999997 999999999999999999999999998754   


Q ss_pred             -CceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          568 -RRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       568 -~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                       +.+.++++++++                ...+.++++++++++|+.|.     .|..|+++++.|.+.+||+.
T Consensus       457 ~~~~~~~v~~~~~----------------~~~~~~~l~~~l~~~l~~~~-----~p~~i~~v~~~P~t~~gK~~  509 (521)
T PRK06187        457 GERPVAVVVLKPG----------------ATLDAKELRAFLRGRLAKFK-----LPKRIAFVDELPRTSVGKIL  509 (521)
T ss_pred             CceEEEEEEECCC----------------CCCCHHHHHHHHHHhccCCC-----CceEEEEccCCCCCCCCCee
Confidence             356777776543                23567889999999998887     77889999999999999973

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=4.4e-57  Score=501.65  Aligned_cols=462  Identities=19%  Similarity=0.247  Sum_probs=351.2

Q ss_pred             HHHHhhhhhhhhhhhhhccc-CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEE
Q 006530           25 RVFTRNCVDAVATRIRISRR-NHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINV  103 (641)
Q Consensus        25 ~~~~~~~~~~~~~~~a~~~~-~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v  103 (641)
                      ...+++.+.++|+++++++. ++.++++||+||.++++++|+.|.++  ++||+|+++++|++++++++|||+++|++++
T Consensus         5 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~~G~~~~   82 (525)
T PRK05851          5 AAALSDAMTASGRDLVVLDRESGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWLAGAAVS   82 (525)
T ss_pred             HHHHHHHhcCCCCceEEeCCCCCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHHcCCCCc
Confidence            34456677788999988776 46689999999999999999999987  7999999999999999999999999999865


Q ss_pred             ecCCC--------CCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHH
Q 006530          104 VRGSR--------SSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDE  175 (641)
Q Consensus       104 ~l~~~--------~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  175 (641)
                      + ++.        ...+++.++++.++++++++++ .....+.....   .+    ...                 .+.+
T Consensus        83 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~-~~~~~~~~~~~---~~----~~~-----------------~~~~  136 (525)
T PRK05851         83 I-LPGPVRGADDGRWADATLTRFAGIGVRTVLSHG-SHLERLRAVDS---SV----TVH-----------------DLAT  136 (525)
T ss_pred             C-CCCCCCccchhhHHHHHHHHHHhcCCCEEEeCH-HHHHHHHHhhc---cc----ccc-----------------cccc
Confidence            4 332        2234556778999999999985 33333322111   00    000                 0000


Q ss_pred             HHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCC-CCCEEEEECC
Q 006530          176 IIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAE-NGDKFLSMLP  254 (641)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~-~~d~~l~~~p  254 (641)
                      .   ......           .......++++++|+|||||||.||||++||+++.+.+......+++. ++|++++++|
T Consensus       137 ~---~~~~~~-----------~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~p  202 (525)
T PRK05851        137 A---AHTNRS-----------ASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLP  202 (525)
T ss_pred             c---cccccc-----------ccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCC
Confidence            0   000000           011223678999999999999999999999999999988888888888 8999999999


Q ss_pred             hhhHHHHHHhHhhhhcCeeEEecc-------hHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q 006530          255 PWHVYERACGYFIFSRGIELMYTA-------VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALI  327 (641)
Q Consensus       255 l~~~~g~~~~~~~l~~G~~~v~~~-------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  327 (641)
                      ++|.+++...+.++..|+++++.+       +..+++.+.++++|++...|.++..+........               
T Consensus       203 l~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~---------------  267 (525)
T PRK05851        203 LYHDMGLAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVS---------------  267 (525)
T ss_pred             CccCccHHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhcccc---------------
Confidence            999999988888899999999853       4568899999999987554444433322110000               


Q ss_pred             HHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH
Q 006530          328 RISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI  407 (641)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l  407 (641)
                                                                                 ...++++|.+++||++++..+
T Consensus       268 -----------------------------------------------------------~~~l~~lr~~~~gG~~l~~~~  288 (525)
T PRK05851        268 -----------------------------------------------------------DVDLGALRVALNGGEPVDCDG  288 (525)
T ss_pred             -----------------------------------------------------------CCCHHHhheeEeccccCCHHH
Confidence                                                                       012234589999999999887


Q ss_pred             -HHHHHH---cCC---eeeeccccccccCeeeecCCC---------------CCcccccccCcCCcEEEEeeCCCCccCC
Q 006530          408 -DLFYEA---IGV---KVQVGYGLTESSPVIAARRPT---------------CNVLGSVGHPINHTEIKIVDAETNEVLP  465 (641)
Q Consensus       408 -~~~~~~---~~~---~v~~~yG~tE~~~~~~~~~~~---------------~~~~~~~G~~~~~~~v~i~d~~~~~~~~  465 (641)
                       +++.+.   +|.   .+++.||+||++..+....+.               ....+++|+|++|++++|+|++...+++
T Consensus       289 ~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~  368 (525)
T PRK05851        289 FERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVA  368 (525)
T ss_pred             HHHHHHHHhhcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCccCC
Confidence             444443   454   499999999997665543221               1234679999999999999976666789


Q ss_pred             CCCCceEEEecCcccccccCCchhhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccH
Q 006530          466 AGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPL  545 (641)
Q Consensus       466 ~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~  545 (641)
                      .|+.|||+++|++++.||+++++.+     .+|||+|||+|+++           +|.++|+||+||+|++ +|++|+|.
T Consensus       369 ~g~~GEl~v~g~~~~~GY~~~~~~~-----~~~~~~TGDl~~~~-----------~G~l~~~GR~dd~i~~-~G~~v~p~  431 (525)
T PRK05851        369 GREIGEIEIRGASMMSGYLGQAPID-----PDDWFPTGDLGYLV-----------DGGLVVCGRAKELITV-AGRNIFPT  431 (525)
T ss_pred             CCCeEEEEEecCchhhccccCCccC-----CCCceeccceEEEE-----------CCEEEEEeecCCEEEE-CCEEeCHH
Confidence            9999999999999999999998643     47899999999886           4999999999999998 99999999


Q ss_pred             HhHHHHhcCcccceEEEEecCCC----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCc
Q 006530          546 ELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQ  621 (641)
Q Consensus       546 ~iE~~l~~~p~V~~~~v~g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~  621 (641)
                      |||++|.+||+|.+|+|++.+++    ..+++|+...                 ...+.+++.++++++|+.+..   ..
T Consensus       432 eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~v~~~~-----------------~~~~~~~~~~~~~~~l~~~l~---~~  491 (525)
T PRK05851        432 EIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAAEF-----------------RGPDEAGARSEVVQRVASECG---VV  491 (525)
T ss_pred             HHHHHHHhCCCcccceEEEEEecCCCCceeEEEEEEe-----------------cCcchHHHHHHHHHHHHHHhC---CC
Confidence            99999999999999999987543    3445554321                 123456788889999998831   17


Q ss_pred             cccEEEec--CCCCCCCCcc
Q 006530          622 IGPIHVVD--EPFTVNFLCL  639 (641)
Q Consensus       622 ~~~i~~~~--~~~~~~~~~l  639 (641)
                      |+.|++++  +.|.+.+||+
T Consensus       492 P~~~~~v~~~~lP~t~~GKi  511 (525)
T PRK05851        492 PSDVVFVAPGSLPRTSSGKL  511 (525)
T ss_pred             ccEEEEECCCCcCcCcchHH
Confidence            78899998  8999999997

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-56  Score=497.70  Aligned_cols=457  Identities=18%  Similarity=0.218  Sum_probs=371.3

Q ss_pred             hhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEEecCCCCCHHHH
Q 006530           36 ATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVI-GVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEEL  114 (641)
Q Consensus        36 ~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~-Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v~l~~~~~~~~l  114 (641)
                      ++++++...+   +++||.||.++++++|++|.++ |+++|++|+++++|+++++++++||+++|++++|+++.++.+++
T Consensus        17 ~~~~a~~~~~---~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l   93 (529)
T PRK07867         17 DDDRGLYFED---SFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSGIVPVGLNPTRRGAAL   93 (529)
T ss_pred             cCCceEEECC---cEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhcCCEEEEecCCCChHHH
Confidence            5677777655   5699999999999999999997 89999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhhhcccCCCchhh
Q 006530          115 LHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDAR  194 (641)
Q Consensus       115 ~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (641)
                      .++++.++++++++++ .....+.+..   ..+. ++...               ...+.+++.......          
T Consensus        94 ~~~l~~~~~~~li~~~-~~~~~~~~~~---~~~~-~~~~~---------------~~~~~~~l~~~~~~~----------  143 (529)
T PRK07867         94 ARDIAHADCQLVLTES-AHAELLDGLD---PGVR-VINVD---------------SPAWADELAAHRDAE----------  143 (529)
T ss_pred             HHHHHhCCCeEEEECH-hHHHHHHhhc---cCce-EEEec---------------cccHHHHhcccCCCC----------
Confidence            9999999999999985 4444333221   1121 11111               012444433211110          


Q ss_pred             cccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHHHh-HhhhhcCee
Q 006530          195 KHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIE  273 (641)
Q Consensus       195 ~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~-~~~l~~G~~  273 (641)
                        .......++++++++|||||||.||+|.+||+++..........+++.++|+++..+|++|.+++... +.++..|++
T Consensus       144 --~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~  221 (529)
T PRK07867        144 --PPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGAS  221 (529)
T ss_pred             --CCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCce
Confidence              11234567899999999999999999999999999888888888899999999999999999998764 446889999


Q ss_pred             EEe---cchHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhHhcccccccCCC
Q 006530          274 LMY---TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK  350 (641)
Q Consensus       274 ~v~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (641)
                      +++   +++..+++.++++++|++.++|+.+..+....+..                                       
T Consensus       222 ~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~---------------------------------------  262 (529)
T PRK07867        222 IALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERP---------------------------------------  262 (529)
T ss_pred             EEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcc---------------------------------------
Confidence            988   46888999999999999999999987765421100                                       


Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhHHHHHHHcCCeeeeccccccccCe
Q 006530          351 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPV  430 (641)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l~~~~~~~~~~v~~~yG~tE~~~~  430 (641)
                                                          .....++| +++||+.++..+.++.+.+|.++++.||+||++..
T Consensus       263 ------------------------------------~~~~~~lr-~~~gg~~~~~~~~~~~~~~g~~l~~~YG~TE~~~~  305 (529)
T PRK07867        263 ------------------------------------DDADNPLR-IVYGNEGAPGDIARFARRFGCVVVDGFGSTEGGVA  305 (529)
T ss_pred             ------------------------------------cccccceE-EEecCCCChHHHHHHHHHhCCcEEEeecccccccc
Confidence                                                00112236 45688888888888888889999999999999865


Q ss_pred             eeecCCCCCcccccccCcCCcEEEEeeCCCCccCCCCC------------CceEEE-ecCcccccccCCchhhhhccCCC
Q 006530          431 IAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGS------------KGIVKV-RGSQVMQGYFKNPSATKQALDED  497 (641)
Q Consensus       431 ~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~------------~Gel~v-~g~~~~~gY~~~~~~~~~~~~~~  497 (641)
                      .....  ....+++|.|.++  +++++++++.+++.|+            .|||++ +|++++.||+++++.+.+.| .+
T Consensus       306 ~~~~~--~~~~~~~g~~~~~--~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~-~~  380 (529)
T PRK07867        306 ITRTP--DTPPGALGPLPPG--VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERM-RG  380 (529)
T ss_pred             cccCC--CCCCCCcCCCCCC--EEEEECCCCCCCCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhh-cC
Confidence            54322  2345689999999  7778877788899888            999999 99999999999999998888 48


Q ss_pred             CccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC----ceEEE
Q 006530          498 GWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAI  573 (641)
Q Consensus       498 g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----~~~a~  573 (641)
                      |||+|||+|++++          +|.+++.||++|+|++ +|++|+|.+||+.|.+||+|.+|+|+|.+++    .+.++
T Consensus       381 g~~~TGD~~~~~~----------~g~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~  449 (529)
T PRK07867        381 GVYWSGDLAYRDA----------DGYAYFAGRLGDWMRV-DGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAA  449 (529)
T ss_pred             CeEeeccEEEEeC----------CCcEEEeccccCeEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEE
Confidence            9999999999999          8999999999999997 9999999999999999999999999998764    46677


Q ss_pred             EecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHH--HHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          574 IVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGE--LRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       574 vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                      |++.++                ...+.++++++++++  |+.|+     .|+.|.++++.|.+.+||+.
T Consensus       450 vv~~~~----------------~~~~~~~l~~~~~~~~~l~~~~-----~P~~i~~~~~iP~t~~GKv~  497 (529)
T PRK07867        450 LVLAPG----------------AKFDPDAFAEFLAAQPDLGPKQ-----WPSYVRVCAELPRTATFKVL  497 (529)
T ss_pred             EEECCC----------------CCCCHHHHHHHHHhhccCCccc-----CCeEEEEeeccCCCCCccee
Confidence            776543                346778899998875  77777     77889999999999999973

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=4.8e-57  Score=518.60  Aligned_cols=477  Identities=19%  Similarity=0.241  Sum_probs=364.3

Q ss_pred             HHHHHhhhhhhhhh-hhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q 006530           24 FRVFTRNCVDAVAT-RIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN  102 (641)
Q Consensus        24 ~~~~~~~~~~~~~~-~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~  102 (641)
                      +...+++++.++|+ ++++...  .++++||+||.++++++|+.|.+. +++||+|+++++|++++++++|||+++|+++
T Consensus       206 ~~~~l~~~~~~~p~~~~a~~~~--~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~~~~G~v~  282 (718)
T PRK08043        206 LYEALLSAQYRYGAGKPCIEDV--NFTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGASLRRRIP  282 (718)
T ss_pred             HHHHHHHHHHHhCCCCcceEcC--CCCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHHHHcCCcc
Confidence            44556667777786 5666542  235699999999999999999887 5999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHH--HhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhh
Q 006530          103 VVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIA--ETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLG  180 (641)
Q Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (641)
                      +|+++.++.+++.+++++++++++++++ +..+...  ......+.++. +.+.+.. .          ...+.+.....
T Consensus       283 vpl~~~~~~~~l~~~l~~s~~~~vi~~~-~~~~~~~~~~~~~~~~~~~~-i~~~~~~-~----------~~~~~~~~~~~  349 (718)
T PRK08043        283 AMMNYTAGVKGLTSAITAAEIKTIFTSR-QFLDKGKLWHLPEQLTQVRW-VYLEDLK-D----------DVTTADKLWIF  349 (718)
T ss_pred             cccccCcCHHHHHHHHHHcCCcEEEEcH-HHHhhccCCChhhhhccccE-EEhhhhh-h----------hcchhHHHHHH
Confidence            9999999999999999999999999985 3322110  01111111222 1111100 0          01111100000


Q ss_pred             hhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHH
Q 006530          181 RESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYE  260 (641)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g  260 (641)
                      .....+.         .......++|+++++|||||||.||||++||+++.+.+......+++.++|++++.+|++|.++
T Consensus       350 ~~~~~~~---------~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g  420 (718)
T PRK08043        350 AHLLMPR---------LAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFG  420 (718)
T ss_pred             HHHhCCc---------cccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhhh
Confidence            0000000         0112346789999999999999999999999999998888888888999999999999999999


Q ss_pred             HHH-hHhhhhcCeeEEecc----hHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHH
Q 006530          261 RAC-GYFIFSRGIELMYTA----VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTA  335 (641)
Q Consensus       261 ~~~-~~~~l~~G~~~v~~~----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (641)
                      +.. .+.++..|+++++.+    ...+.+.+.++++|++.++|+++..+.+...                          
T Consensus       421 ~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~--------------------------  474 (718)
T PRK08043        421 LTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFAN--------------------------  474 (718)
T ss_pred             hHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhcC--------------------------
Confidence            865 566799999998753    3567788999999999999998865533100                          


Q ss_pred             HHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHc
Q 006530          336 FKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI  414 (641)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~  414 (641)
                                                                         ..+++++|.+++||+++++++ +.+.+.+
T Consensus       475 ---------------------------------------------------~~~~~~lr~i~~gg~~l~~~~~~~~~~~~  503 (718)
T PRK08043        475 ---------------------------------------------------PYDFARLRYVVAGAEKLQESTKQLWQDKF  503 (718)
T ss_pred             ---------------------------------------------------cccccceEEEEEeCccCCHHHHHHHHHHc
Confidence                                                               013455699999999999988 4555667


Q ss_pred             CCeeeeccccccccCeeeecCCCCCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccC--Cchh---
Q 006530          415 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFK--NPSA---  489 (641)
Q Consensus       415 ~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~--~~~~---  489 (641)
                      |.++++.||+||++...+...+....++++|+|+||++++|++++ +    .++.|||+++|++++.||++  +++.   
T Consensus       504 g~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~~~i~d~~-~----~~~~Gel~v~g~~v~~GY~~~e~~~~~~~  578 (718)
T PRK08043        504 GLRILEGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLLSVP-G----IEQGGRLQLKGPNIMNGYLRVEKPGVLEV  578 (718)
T ss_pred             CCCeecccCcccccceEEecCCcccCCCCCCCcCCCCeeEEecCC-C----CCCceEEEEecCCccccccCCCCcccccc
Confidence            999999999999987776555444567899999999999999853 2    24569999999999999998  3442   


Q ss_pred             ----hhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEec
Q 006530          490 ----TKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ  565 (641)
Q Consensus       490 ----~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~  565 (641)
                          +.+.+..+|||+|||+|++|+          ||++++.||++|+|++ +|++|+|.|||+.+.+|+.+.+++|++.
T Consensus       579 ~~~~~~~~~~~~gw~~TGDlg~~d~----------dG~l~i~GR~~d~I~~-~G~~V~p~eIE~~l~~~~~~~~~avv~~  647 (718)
T PRK08043        579 PTAENARGEMERGWYDTGDIVRFDE----------QGFVQIQGRAKRFAKI-AGEMVSLEMVEQLALGVSPDKQHATAIK  647 (718)
T ss_pred             cccccccccccCCeEecCCEEEEcC----------CCcEEEEecCCCeeEe-CcEEcCHHHHHHHHHhCCccceEEEEEc
Confidence                222233579999999999999          9999999999999997 8999999999999999999989999988


Q ss_pred             CCCceEEEEec-CHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHH-HHhHhccCCCccccEEEecCCCCCCCCcc
Q 006530          566 DQRRPGAIIVP-DKEEVLMAAKRLSIVHADASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCL  639 (641)
Q Consensus       566 ~~~~~~a~vv~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~~~~~~~~~i~~~~~~~~~~~~~l  639 (641)
                      +++..+..++. ..+                ...+.++++++++++ |+.|+     .|++|.++++.|.+.+||+
T Consensus       648 ~~~~~ge~~v~~~~~----------------~~~~~~~l~~~~~~~~l~~~~-----vP~~i~~v~~lP~t~~GKi  702 (718)
T PRK08043        648 SDASKGEALVLFTTD----------------SELTREKLQQYAREHGVPELA-----VPRDIRYLKQLPLLGSGKP  702 (718)
T ss_pred             cCCCCCceEEEEEcC----------------cccCHHHHHHHHHhcCCCccc-----CCceEEEecccCcCCCCCc
Confidence            76543321111 111                235677899999987 89998     7788999999999999997

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4e-56  Score=494.39  Aligned_cols=485  Identities=22%  Similarity=0.314  Sum_probs=391.9

Q ss_pred             HHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEE
Q 006530           24 FRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINV  103 (641)
Q Consensus        24 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v  103 (641)
                      +...++..+..+|+++|+...+   +.+||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus        13 l~~~l~~~a~~~~~~~a~~~~~---~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G~~~v   89 (523)
T PRK08316         13 IGDILRRSARRYPDKTALVFGD---RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHV   89 (523)
T ss_pred             HHHHHHHHHHHCCCCeEEEECC---ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEE
Confidence            4444555666778888888766   4599999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhh
Q 006530          104 VRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRES  183 (641)
Q Consensus       104 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (641)
                      |+++..+.+++..+++.++++.+++++ .....+.+...... .............     ........+.++.......
T Consensus        90 ~l~~~~~~~~i~~~l~~~~~~~ii~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  162 (523)
T PRK08316         90 PVNFMLTGEELAYILDHSGARAFLVDP-ALAPTAEAALALLP-VDTLILSLVLGGR-----EAPGGWLDFADWAEAGSVA  162 (523)
T ss_pred             ecccccCHHHHHHHHHhCCCCEEEEcc-chHHHHHHHhhhcC-ccceeeeeccccc-----ccccchhhHHHHHhcCCCc
Confidence            999999999999999999999999986 44455544433322 1111111100000     0011234444443322111


Q ss_pred             hcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHHH
Q 006530          184 RKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC  263 (641)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~  263 (641)
                                   ........+++++++|||||||.||+|.+||++++..+......+++.++++++..+|++|..++..
T Consensus       163 -------------~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~  229 (523)
T PRK08316        163 -------------EPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDV  229 (523)
T ss_pred             -------------cCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHH
Confidence                         1123456789999999999999999999999999988888888889999999999999999999866


Q ss_pred             hH-hhhhcCeeEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhH
Q 006530          264 GY-FIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRI  339 (641)
Q Consensus       264 ~~-~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (641)
                      .+ .++..|+++++.   ++..+++.++++++|++.++|.++..+.+.....                            
T Consensus       230 ~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------------------  281 (523)
T PRK08316        230 FLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFD----------------------------  281 (523)
T ss_pred             HHHHHHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccc----------------------------
Confidence            44 458889999885   5788999999999999999999998776531110                            


Q ss_pred             hcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHc-CCe
Q 006530          340 YEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVK  417 (641)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~-~~~  417 (641)
                                                                     ...++++|.++.||+.++..+ +.+.+.+ +.+
T Consensus       282 -----------------------------------------------~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~  314 (523)
T PRK08316        282 -----------------------------------------------TRDLSSLRKGYYGASIMPVEVLKELRERLPGLR  314 (523)
T ss_pred             -----------------------------------------------cCCcccceEEEEcCCcCCHHHHHHHHHHcCCCc
Confidence                                                           023345589999999999987 4455556 789


Q ss_pred             eeeccccccccCeeeecCCC--CCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccC
Q 006530          418 VQVGYGLTESSPVIAARRPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD  495 (641)
Q Consensus       418 v~~~yG~tE~~~~~~~~~~~--~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~  495 (641)
                      +++.||+||++.+.......  ....+++|+|+++++++|+| +++.+++.|+.|||+++|+.++.||+++++.+...| 
T Consensus       315 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~-  392 (523)
T PRK08316        315 FYNCYGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVD-DDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAF-  392 (523)
T ss_pred             eeeeecccccCccccccCccccccccCCcccCCCCcEEEEEc-CCCCCCCCCCcceEEEECCchhhhhcCCHHHHHHHh-
Confidence            99999999998776654432  24457899999999999999 457889999999999999999999999999998888 


Q ss_pred             CCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCCc----eE
Q 006530          496 EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PG  571 (641)
Q Consensus       496 ~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~~----~~  571 (641)
                      .++||+|||+|++++          ||.+++.||.+|+|++ +|++|+|.+||+.+.++|+|.+++|++.+++.    +.
T Consensus       393 ~~~~~~TGDl~~~~~----------~g~l~i~gR~~~~i~~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~  461 (523)
T PRK08316        393 RGGWFHSGDLGVMDE----------EGYITVVDRKKDMIKT-GGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVT  461 (523)
T ss_pred             hCCCeeccceEEEcC----------CceEEEecccccEEEe-CCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEE
Confidence            589999999999999          8999999999999997 99999999999999999999999999986654    66


Q ss_pred             EEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          572 AIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       572 a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                      ++++++++                ...+.++++++++++++.|+     .|.+|+++++.|.+.+||+.
T Consensus       462 ~~v~~~~~----------------~~~~~~~l~~~~~~~l~~~~-----~p~~i~~v~~~p~t~~gKi~  509 (523)
T PRK08316        462 AVVVPKAG----------------ATVTEDELIAHCRARLAGFK-----VPKRVIFVDELPRNPSGKIL  509 (523)
T ss_pred             EEEEECCC----------------CCCCHHHHHHHHHHhcccCC-----CCcEEEEecCCCCCCcccee
Confidence            77777643                23567889999999998887     78889999999999999973

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.4e-56  Score=494.13  Aligned_cols=481  Identities=20%  Similarity=0.234  Sum_probs=391.6

Q ss_pred             hHHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q 006530           23 GFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN  102 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~  102 (641)
                      .+.+.+.++++++|+++|+++++   +.+||.||.++++++|..|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus        13 ~~~~~~~~~~~~~~~~~a~~~~~---~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~~   89 (524)
T PRK06188         13 TYGHLLVSALKRYPDRPALVLGD---TRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRR   89 (524)
T ss_pred             cHHHHHHHHHHHCCCCeEEEECC---CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEE
Confidence            45556666667788888888766   459999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhh
Q 006530          103 VVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRE  182 (641)
Q Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (641)
                      +++++..+.+++.++++.++++.+++++..+...+.........++.++......              .+.++......
T Consensus        90 v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~  155 (524)
T PRK06188         90 TALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVP--------------DGVDLLAAAAK  155 (524)
T ss_pred             EecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCcc--------------chhhHHHhhhc
Confidence            9999999999999999999999999986434444444333334444444332110              11222211111


Q ss_pred             hhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHH
Q 006530          183 SRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERA  262 (641)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~  262 (641)
                      ....          .......++++++++|||||||.||+|.++|.++...+......+++.+++++++.+|++|..++.
T Consensus       156 ~~~~----------~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~  225 (524)
T PRK06188        156 FGPA----------PLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF  225 (524)
T ss_pred             cCcc----------cccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHH
Confidence            0000          001122456699999999999999999999999999998888888999999999999999998875


Q ss_pred             HhHhhhhcCeeEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhH
Q 006530          263 CGYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRI  339 (641)
Q Consensus       263 ~~~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (641)
                       .+.++..|+++++.   ++..+++.++++++|+++++|+++..+.+......                           
T Consensus       226 -~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~---------------------------  277 (524)
T PRK06188        226 -FLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRT---------------------------  277 (524)
T ss_pred             -HHHHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccC---------------------------
Confidence             46668899999985   57889999999999999999999988865321110                           


Q ss_pred             hcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHcCCee
Q 006530          340 YEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKV  418 (641)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~~~~v  418 (641)
                                                                      ..+.++|.+++||+++++.. ..+.+.++..+
T Consensus       278 ------------------------------------------------~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~  309 (524)
T PRK06188        278 ------------------------------------------------RDLSSLETVYYGASPMSPVRLAEAIERFGPIF  309 (524)
T ss_pred             ------------------------------------------------CCCcceeEEEEcCCCCCHHHHHHHHHHhCchh
Confidence                                                            13345699999999999875 66777788889


Q ss_pred             eeccccccccCeeeecCCC------CCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhh
Q 006530          419 QVGYGLTESSPVIAARRPT------CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ  492 (641)
Q Consensus       419 ~~~yG~tE~~~~~~~~~~~------~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~  492 (641)
                      ++.||+||++..+......      .....++|.|+++++++|+++ ++.+++.|+.|||+++|+.++.||++++..+..
T Consensus       310 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~~-~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~  388 (524)
T PRK06188        310 AQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLDE-DGREVAQGEVGEICVRGPLVMDGYWNRPEETAE  388 (524)
T ss_pred             hheeCccccCCceeecCchhccccccccCCccccccCCcEEEEEcC-CCCCCCCCCeeEEEEECcchhhhhcCChHHhhh
Confidence            9999999997655543322      235578999999999999995 588999999999999999999999999999988


Q ss_pred             ccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC----
Q 006530          493 ALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----  568 (641)
Q Consensus       493 ~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----  568 (641)
                      .| .+|||+|||++++++          ||.+++.||.+|+|++ +|++|+|.+||++|.+||+|.+++|++.+++    
T Consensus       389 ~~-~~g~~~TGDl~~~~~----------~g~~~~~GR~~~~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~  456 (524)
T PRK06188        389 AF-RDGWLHTGDVAREDE----------DGFYYIVDRKKDMIVT-GGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGE  456 (524)
T ss_pred             hh-cCCceeecceEEEcC----------CccEEEEeccccceec-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCc
Confidence            88 589999999999999          8999999999999997 9999999999999999999999999997654    


Q ss_pred             ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          569 RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       569 ~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                      .+.++++++++                ...+.++++++++++++.|+     .|.+|+++++.|.+.+||+.
T Consensus       457 ~~~~~v~~~~~----------------~~~~~~~l~~~~~~~l~~~~-----~p~~i~~v~~~P~t~~gKi~  507 (524)
T PRK06188        457 AVTAVVVLRPG----------------AAVDAAELQAHVKERKGSVH-----APKQVDFVDSLPLTALGKPD  507 (524)
T ss_pred             eEEEEEEECCC----------------CCCCHHHHHHHHHHhcccCC-----CCcEEEEecCCCCCcccccc
Confidence            56678887643                23567889999999999988     77889999999999999973

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=1.1e-56  Score=551.57  Aligned_cols=508  Identities=16%  Similarity=0.151  Sum_probs=383.3

Q ss_pred             hhHHHHHhhhhhhhhhhhhhccc------CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHH
Q 006530           22 HGFRVFTRNCVDAVATRIRISRR------NHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGM   95 (641)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~a~~~~------~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~   95 (641)
                      ..+.+++++++..+|+++|+++.      ....+++||+||.++++++|++|.+.|+++||+|+|+++|+++++++++||
T Consensus       236 ~~l~~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA~  315 (1389)
T TIGR03443       236 GAIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGV  315 (1389)
T ss_pred             CcHHHHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHHH
Confidence            34666777888889999998753      123578999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEecCCCCCHHHHHHHHHhcCceEEEecChh--hHHHHHHhhccc----ccccEEEEEeCCCCCCCCCccCCCC
Q 006530           96 LATGAINVVRGSRSSSEELLHIYNHSESVALAVENPE--FFNRIAETLCSK----AAMRFIILLWGKKSSVAPDIVEEIP  169 (641)
Q Consensus        96 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~--~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~  169 (641)
                      +++|++++|++|.++.+++.++++.+++++++++...  ....+.+.....    ..+..+.. .++... ...    ..
T Consensus       316 l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~----~~  389 (1389)
T TIGR03443       316 LKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALAL-QDDGSL-VGG----SL  389 (1389)
T ss_pred             HhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEe-cccccc-ccc----cc
Confidence            9999999999999999999999999999999987521  111111111110    01111111 110000 000    00


Q ss_pred             cccHHHHHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEE
Q 006530          170 VFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKF  249 (641)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~  249 (641)
                      .....+++........          ........++++++++|||||||.||||+++|+++.+.+.+....+++.++|++
T Consensus       390 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~  459 (1389)
T TIGR03443       390 EGGETDVLAPYQALKD----------TPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKF  459 (1389)
T ss_pred             cccccccccccccccc----------CCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEE
Confidence            0000000000000000          011123467899999999999999999999999999999888888999999999


Q ss_pred             EEECChhhHHHHHHhHhhhhcCeeEEecc------hHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHH
Q 006530          250 LSMLPPWHVYERACGYFIFSRGIELMYTA------VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVA  323 (641)
Q Consensus       250 l~~~pl~~~~g~~~~~~~l~~G~~~v~~~------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~  323 (641)
                      +...|++|..++...+.++..|+++++.+      +..+.+.++++++|++..+|+++..+....               
T Consensus       460 ~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~---------------  524 (1389)
T TIGR03443       460 TMLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA---------------  524 (1389)
T ss_pred             EEecCceecchHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc---------------
Confidence            99999999998888899999999999853      557899999999999999999988775310               


Q ss_pred             HHHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCC
Q 006530          324 RALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSL  403 (641)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l  403 (641)
                                                                                     ...+.++|.+++||+++
T Consensus       525 ---------------------------------------------------------------~~~~~~lr~~~~gGe~l  541 (1389)
T TIGR03443       525 ---------------------------------------------------------------TTPIPSLHHAFFVGDIL  541 (1389)
T ss_pred             ---------------------------------------------------------------cccCCCccEEEEecccC
Confidence                                                                           02344569999999999


Q ss_pred             ChhHH-HHHHHc-CCeeeeccccccccCeeeecCCCC-----------CcccccccCcCCcEEEEeeCC-CCccCCCCCC
Q 006530          404 PMHID-LFYEAI-GVKVQVGYGLTESSPVIAARRPTC-----------NVLGSVGHPINHTEIKIVDAE-TNEVLPAGSK  469 (641)
Q Consensus       404 ~~~l~-~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~-----------~~~~~~G~~~~~~~v~i~d~~-~~~~~~~g~~  469 (641)
                      +..+. ++.+.. +.++++.||+||++..++......           ....++|.|+++++++|+|++ .+++++.|+.
T Consensus       542 ~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~~G~~  621 (1389)
T TIGR03443       542 TKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVNRNDRTQTCGVGEV  621 (1389)
T ss_pred             CHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCCEEEEECCccCCCcCCCCCc
Confidence            98774 444443 789999999999987655432111           123578999999999999964 3578999999


Q ss_pred             ceEEEecCcccccccCCchhhhhccC----------------------------CCCccccCceeEEcCCCCCCCccccC
Q 006530          470 GIVKVRGSQVMQGYFKNPSATKQALD----------------------------EDGWLNTGDIGWIAPHHSRGRSRRCG  521 (641)
Q Consensus       470 Gel~v~g~~~~~gY~~~~~~~~~~~~----------------------------~~g~~~TGDl~~~~~~~~~~~~~~~~  521 (641)
                      |||+|+||+++.||+++|+.|.+.|.                            .++||+|||+|++++          |
T Consensus       622 GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~----------d  691 (1389)
T TIGR03443       622 GEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLP----------D  691 (1389)
T ss_pred             eEEEecccccchhcCCChhHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCceeEcC----------C
Confidence            99999999999999999999998873                            257999999999999          9


Q ss_pred             ceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCC----CceEEEEecCHHH--HHHHHHHcCCCCCC-
Q 006530          522 GVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEE--VLMAAKRLSIVHAD-  594 (641)
Q Consensus       522 G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~----~~~~a~vv~~~~~--~~~~~~~~~~~~~~-  594 (641)
                      |.|+|+||+||+||+ +|++|+|.|||+.|.+||.|.+++|++.++    +.++++|++..+.  .............. 
T Consensus       692 G~l~~~GR~dd~Iki-~G~rI~p~eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~~~~  770 (1389)
T TIGR03443       692 GNVECCGRADDQVKI-RGFRIELGEIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQDKSDELEEFKSEVDDEESSD  770 (1389)
T ss_pred             CCEEEecccCCEEEe-CcEEecHHHHHHHHHhCcchheeEEEEeeCCCCCeEEEEEEeccCccccccccccccccccccc
Confidence            999999999999997 999999999999999999999999987543    4688888876211  10000000000000 


Q ss_pred             -------hhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCcc
Q 006530          595 -------ASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  639 (641)
Q Consensus       595 -------~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l  639 (641)
                             ......++++++++++|+.|+     +|..|+.+++.|.+.|||+
T Consensus       771 ~~~~~~~~~~~~~~~l~~~l~~~Lp~y~-----~P~~~~~~~~lP~t~~GKi  817 (1389)
T TIGR03443       771 PVVKGLIKYRKLIKDIREYLKKKLPSYA-----IPTVIVPLKKLPLNPNGKV  817 (1389)
T ss_pred             cchhhhhhhhhhHHHHHHHHHhhCCccc-----CCceEEEcccCCCCCCccc
Confidence                   001124678899999999998     6788999999999999997

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=5.1e-56  Score=494.48  Aligned_cols=480  Identities=20%  Similarity=0.286  Sum_probs=386.0

Q ss_pred             hHHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q 006530           23 GFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN  102 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~  102 (641)
                      .+..+++++++  |+++|+++.+.   .+||+||.++++++|..|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus        26 ~~~~~~~~~a~--p~~~a~~~~~~---~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~v~  100 (536)
T PRK10946         26 PLTDILTRHAA--SDAIAVICGER---QFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVAP  100 (536)
T ss_pred             cHHHHHHHhhC--CCCeEEEeCCC---cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHcCeEE
Confidence            34455555555  89999887664   49999999999999999999999999999999999999999999999999988


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEecChhh----HHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHH
Q 006530          103 VVRGSRSSSEELLHIYNHSESVALAVENPEF----FNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIID  178 (641)
Q Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (641)
                      +++.+.....++..+++.++++.+++++...    ...........+.++.++...+ .           ....+.+++.
T Consensus       101 v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~-----------~~~~~~~~~~  168 (536)
T PRK10946        101 VNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLND-D-----------GEHSLDDAIN  168 (536)
T ss_pred             ecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecC-C-----------CCccHHHHhh
Confidence            8877778888999999999999999975311    1111122222334444433321 0           1133444443


Q ss_pred             hhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhH
Q 006530          179 LGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV  258 (641)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~  258 (641)
                      .....             .......++++++++|||||||.||+|.+||+++...+......+++.++|++++.+|++|.
T Consensus       169 ~~~~~-------------~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~  235 (536)
T PRK10946        169 HPAED-------------FTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHN  235 (536)
T ss_pred             Ccccc-------------cccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCcccc
Confidence            32111             11234467899999999999999999999999999999888888899999999999999998


Q ss_pred             HHHHH--hHhhhhcCeeEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHH
Q 006530          259 YERAC--GYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAY  333 (641)
Q Consensus       259 ~g~~~--~~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (641)
                      +++..  .+.++..|+++++.   ++..+.+.++++++|++.++|.++..+........                     
T Consensus       236 ~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~---------------------  294 (536)
T PRK10946        236 YPMSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGG---------------------  294 (536)
T ss_pred             ccchhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccC---------------------
Confidence            88753  56778999999884   56788899999999999999999988876432110                     


Q ss_pred             HHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHH
Q 006530          334 TAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYE  412 (641)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~  412 (641)
                                                                          ....++++|.+++||+++++.+ +++.+
T Consensus       295 ----------------------------------------------------~~~~~~~l~~v~~gg~~l~~~~~~~~~~  322 (536)
T PRK10946        295 ----------------------------------------------------SRAQLASLKLLQVGGARLSETLARRIPA  322 (536)
T ss_pred             ----------------------------------------------------ccccccceeEEEECCCCCCHHHHHHHHH
Confidence                                                                0023345699999999999998 55556


Q ss_pred             HcCCeeeeccccccccCeeeecC-CCCCcccccccCc-CCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhh
Q 006530          413 AIGVKVQVGYGLTESSPVIAARR-PTCNVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSAT  490 (641)
Q Consensus       413 ~~~~~v~~~yG~tE~~~~~~~~~-~~~~~~~~~G~~~-~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~  490 (641)
                      .+|.++++.||+||++....... ......+++|.|+ +++.++|+| +++++++.|+.|||+++|+.++.||+++++.+
T Consensus       323 ~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t  401 (536)
T PRK10946        323 ELGCQLQQVFGMAEGLVNYTRLDDSDERIFTTQGRPMSPDDEVWVAD-ADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHN  401 (536)
T ss_pred             hcCCeEEEeecccccceeeecCCCccccccccCCcccCCCceEEEEC-CCCCCCCCCCccEEEEecCccchhhcCCcccc
Confidence            67999999999999754433211 1223457899998 789999999 56889999999999999999999999999999


Q ss_pred             hhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC--
Q 006530          491 KQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR--  568 (641)
Q Consensus       491 ~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~--  568 (641)
                      .+.|+.++||+|||+|++++          +|.+++.||.+|+|+. +|++++|.+||..|.+||+|.+++|++.+++  
T Consensus       402 ~~~~~~d~~~~TGDl~~~d~----------~G~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~  470 (536)
T PRK10946        402 ASAFDANGFYCSGDLVSIDP----------DGYITVVGREKDQINR-GGEKIAAEEIENLLLRHPAVIHAALVSMEDELM  470 (536)
T ss_pred             hhhcccCCceecCceEEECC----------CCcEEEeccccceeec-CCEEEcHHHHHHHHHhCCCcceEEEEcCCCccc
Confidence            99998899999999999999          9999999999999996 9999999999999999999999999998765  


Q ss_pred             --ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHH-HHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          569 --RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       569 --~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                        .++++|+++.                  ..+.+++++++++. ++.|+     .|+.|..+++.|.+.+||+.
T Consensus       471 g~~~~a~vv~~~------------------~~~~~~l~~~~~~~~l~~~~-----~P~~~~~~~~iP~t~~GKv~  522 (536)
T PRK10946        471 GEKSCAFLVVKE------------------PLKAVQLRRFLREQGIAEFK-----LPDRVECVDSLPLTAVGKVD  522 (536)
T ss_pred             CceEEEEEEeCC------------------CCCHHHHHHHHHhCCccccc-----cCcEEEEeccCCCCCCCccc
Confidence              4567777652                  25678899999886 88888     77889999999999999973

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=6.4e-56  Score=496.56  Aligned_cols=490  Identities=25%  Similarity=0.379  Sum_probs=377.8

Q ss_pred             HHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q 006530           24 FRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVI-GVKPEEKLSLFSDNSCRWLVADQGMLATGAIN  102 (641)
Q Consensus        24 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~-Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~  102 (641)
                      +...+++++.+.|+++++...+   +++||.||.++++++|+.|.+. |+++||+|+++++|+++++++++||+++|+++
T Consensus        26 ~~~~l~~~~~~~p~~~a~~~~~---~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v~  102 (562)
T PRK12492         26 VVEVFERSCKKFADRPAFSNLG---VTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIV  102 (562)
T ss_pred             HHHHHHHHHHhCCCCeeEecCC---ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence            4455566677788888887655   4599999999999999999985 99999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEe-CC-CCC------------C--CCCccC
Q 006530          103 VVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLW-GK-KSS------------V--APDIVE  166 (641)
Q Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~-~~~------------~--~~~~~~  166 (641)
                      +++++..+.+++.+++++++++.+++++ .+...+...... ......+... .+ ...            .  ......
T Consensus       103 v~~~~~~~~~~l~~~l~~~~~~~~i~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (562)
T PRK12492        103 VNTNPLYTAREMRHQFKDSGARALVYLN-MFGKLVQEVLPD-TGIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPAYH  180 (562)
T ss_pred             eccCccCCHHHHHHHHhccCceEEEecc-ccchHHHHhhhc-cCceEEEeechhhccccccchhcccccccccccccccC
Confidence            9999999999999999999999999975 333333322221 1111111100 00 000            0  000000


Q ss_pred             CCCcccHHHHHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcC----
Q 006530          167 EIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP----  242 (641)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~----  242 (641)
                      ......|+++...+....            ........+++++|+|||||||.||+|.++|+++...+......+.    
T Consensus       181 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~  248 (562)
T PRK12492        181 LPQAVPFKQALRQGRGLS------------LKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGP  248 (562)
T ss_pred             CcccccHHHHHhccCCCC------------CCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccc
Confidence            001234554443221100            1123456789999999999999999999999999877665544332    


Q ss_pred             -----CCC-CCEEEEECChhhHHHHHHh-HhhhhcCeeEEec----chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHH
Q 006530          243 -----AEN-GDKFLSMLPPWHVYERACG-YFIFSRGIELMYT----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQ  311 (641)
Q Consensus       243 -----~~~-~d~~l~~~pl~~~~g~~~~-~~~l~~G~~~v~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  311 (641)
                           ... .++++..+|++|++++... ...+..|...++.    ++..++..++++++|++.++|+++..+.+.....
T Consensus       249 ~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~  328 (562)
T PRK12492        249 DGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFK  328 (562)
T ss_pred             cccccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcc
Confidence                 223 3577899999999998653 4446777766653    4678889999999999999999998876531100


Q ss_pred             HhhccHHHHHHHHHHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcC
Q 006530          312 IFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG  391 (641)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  391 (641)
                                                                                                 ...+.
T Consensus       329 ---------------------------------------------------------------------------~~~~~  333 (562)
T PRK12492        329 ---------------------------------------------------------------------------DLDFS  333 (562)
T ss_pred             ---------------------------------------------------------------------------ccccc
Confidence                                                                                       01234


Q ss_pred             CceeEEeecCCCChhH-HHHHHHcCCeeeeccccccccCeeeecCCC-CCcccccccCcCCcEEEEeeCCCCccCCCCCC
Q 006530          392 ISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSK  469 (641)
Q Consensus       392 ~~r~i~~gG~~l~~~l-~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~-~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~  469 (641)
                      ++|.+++||+++++.+ ..+.+.++.++++.||+||++.++...... ...++++|.|+++++++|+|+ ++.++++|+.
T Consensus       334 ~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~-~~~~~~~g~~  412 (562)
T PRK12492        334 ALKLTNSGGTALVKATAERWEQLTGCTIVEGYGLTETSPVASTNPYGELARLGTVGIPVPGTALKVIDD-DGNELPLGER  412 (562)
T ss_pred             ceeEEEeccccCCHHHHHHHHHHhCCceeeccCccccCceeeecCCcccccCCccceecCCCEEEEECC-CCCCCCCCCc
Confidence            5699999999999988 445555799999999999998776654432 234578999999999999995 6788999999


Q ss_pred             ceEEEecCcccccccCCchhhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHH
Q 006530          470 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEE  549 (641)
Q Consensus       470 Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~  549 (641)
                      |||+++|+.++.||+++++.+.+.|..+|||+|||+|++++          +|.+++.||++|+|++ +|++|+|.+||+
T Consensus       413 Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGD~g~~~~----------~G~l~i~GR~~~~i~~-~G~~i~~~eIE~  481 (562)
T PRK12492        413 GELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDP----------DGFVRIVDRKKDLIIV-SGFNVYPNEIED  481 (562)
T ss_pred             eEEEEeCCccccccccCchhhhhcccCCCceecCcEEEECC----------CCeEEEecccCCeEEE-CCEEECHHHHHH
Confidence            99999999999999999999999987789999999999999          9999999999999997 899999999999


Q ss_pred             HHhcCcccceEEEEecCCC----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccE
Q 006530          550 AALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPI  625 (641)
Q Consensus       550 ~l~~~p~V~~~~v~g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i  625 (641)
                      .|.+||.|.+++|++.+++    .+.+++++..                 ...+.++++++++++++.|+     .|.+|
T Consensus       482 ~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~-----------------~~~~~~~i~~~~~~~l~~~~-----~P~~i  539 (562)
T PRK12492        482 VVMAHPKVANCAAIGVPDERSGEAVKLFVVARD-----------------PGLSVEELKAYCKENFTGYK-----VPKHI  539 (562)
T ss_pred             HHHhCCCeeEEEEEeccCCCCCceEEEEEEeCC-----------------CCCCHHHHHHHHHHhccccc-----CCcEE
Confidence            9999999999999997654    3556666542                 13466889999999999998     77889


Q ss_pred             EEecCCCCCCCCcc
Q 006530          626 HVVDEPFTVNFLCL  639 (641)
Q Consensus       626 ~~~~~~~~~~~~~l  639 (641)
                      .++++.|.+.+||+
T Consensus       540 ~~~~~~P~t~~GK~  553 (562)
T PRK12492        540 VLRDSLPMTPVGKI  553 (562)
T ss_pred             EEeccCCCCCCCce
Confidence            99999999999997

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=7.3e-55  Score=511.77  Aligned_cols=525  Identities=14%  Similarity=0.122  Sum_probs=399.0

Q ss_pred             HHHHHhhhhhhhhhhhhhccc--CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCE
Q 006530           24 FRVFTRNCVDAVATRIRISRR--NHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAI  101 (641)
Q Consensus        24 ~~~~~~~~~~~~~~~~a~~~~--~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~  101 (641)
                      +...+++.++++|+++++...  .++++++||+|+.++++++|.+|.++|+++||+|+|+++|+++|+++++||+++|++
T Consensus       429 l~dll~~~a~~~pd~~al~~~~~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~lA~~~~GaV  508 (1452)
T PTZ00297        429 LGEMWERSVTRHSTFRCLGQTSESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYGFT  508 (1452)
T ss_pred             HHHHHHHHHHHCCCCeEEEEeccCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCE
Confidence            344555666677888887632  466789999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCC-CC-CCCccCCCCcccHHHHHHh
Q 006530          102 NVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKS-SV-APDIVEEIPVFSYDEIIDL  179 (641)
Q Consensus       102 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~  179 (641)
                      .||+++  +.+++.+++++++++++|++. .....+.++..  ..++.++++++... .. ......++...+|++++..
T Consensus       509 ~VPly~--t~~eL~yIL~~S~akvVfv~~-~~l~kl~~i~~--~~Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~~~ll~~  583 (1452)
T PTZ00297        509 TLPLVG--KGSTMRTLIDEHKIKVVFADR-NSVAAILTCRS--RKLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQK  583 (1452)
T ss_pred             EEeCCC--CHHHHHHHHHhcCCcEEEEch-hHHHHHHhhcc--cCCcEEEEECCCcccccccccccCCcceeeHHHHHhc
Confidence            999975  467899999999999999985 55556655432  36888888753111 00 0000012346789999887


Q ss_pred             hhhhhcccCCCchhhcccccCCCCCCCEEEEEe---CCCCCCCchhHHhhHHHHHHHHHHHhhhc---CCCCCCEEEEEC
Q 006530          180 GRESRKAFSDSNDARKHYKYETIGSDDIATYVY---TSGTTGNPKGVMLTHKNLLHQIRSLYDIV---PAENGDKFLSML  253 (641)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~---TSGTTG~pK~v~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~  253 (641)
                      +.....           ......+++|++.|+|   ||||||.||||++||+|+++.+.......   ...++|++++++
T Consensus       584 G~~~~~-----------~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~L  652 (1452)
T PTZ00297        584 GRLCPV-----------PLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFT  652 (1452)
T ss_pred             CcccCc-----------cccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEec
Confidence            632111           1123347889999996   99999999999999999999988865432   356789999999


Q ss_pred             ChhhHHHHHHhHhhhhcCeeEEecchHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHH
Q 006530          254 PPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAY  333 (641)
Q Consensus       254 pl~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (641)
                      |++|+++....+.++..|+++.++++..+++++++++||+++++|.+|+.+...+..+....+.+.+++..++.+.....
T Consensus       653 PLaHI~er~~~~~~l~~G~~I~~~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~~  732 (1452)
T PTZ00297        653 PFAMLFNRVFVLGLFAHGSAVATVDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRL  732 (1452)
T ss_pred             hHHHHHHHHHHHHHHHcCCEEEeCCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            99999998777788999999998899999999999999999999999999999888777666667766665554432110


Q ss_pred             HHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCC-ceeEEeecC--CCChhHHHH
Q 006530          334 TAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGI-SKAGVSGGG--SLPMHIDLF  410 (641)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~r~i~~gG~--~l~~~l~~~  410 (641)
                      .      ...                            .+...+.+.++|+++++.||. +|.+++||+  +++..    
T Consensus       733 ~------~~g----------------------------~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~----  774 (1452)
T PTZ00297        733 I------NIH----------------------------RRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFS----  774 (1452)
T ss_pred             H------hcC----------------------------CCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChH----
Confidence            0      000                            011235677899999999987 488888874  44433    


Q ss_pred             HHHcCCeeeeccccccccCeeeecCCCCCcccccccCcCCcEEEEeeC-CCCccCCCCCCceEEEecCcccccccCCchh
Q 006530          411 YEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDA-ETNEVLPAGSKGIVKVRGSQVMQGYFKNPSA  489 (641)
Q Consensus       411 ~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~  489 (641)
                       ...++++..+||+||+.   +.+.+.....  .|.|+|+++++|.+. +.+.   .+..|||+++       |.++|+.
T Consensus       775 -l~~~i~i~~g~glTE~~---~~~~~~~~~~--~G~PlpgvEvKI~~~~E~~~---~~~~GEIlvr-------~~kdpe~  838 (1452)
T PTZ00297        775 -LLEHISVCYVPCLREVF---FLPSEGVFCV--DGTPAPSLQVDLEPFDEPSD---GAGIGQLVLA-------KKGEPRR  838 (1452)
T ss_pred             -HhCCceEEEecceEEee---eecCCCCccc--CCeecCceEEEEcccccccC---CCCCCeEEEE-------ECCChHH
Confidence             33367889999999953   3344433332  399999999999873 3222   1236999996       4588998


Q ss_pred             hhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCCc
Q 006530          490 TKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR  569 (641)
Q Consensus       490 ~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~~  569 (641)
                      |.+.+  +||+         +          ||+|+|.||++|+|++++|++|.|+.||+.+..+|.|.+++|+|.+++.
T Consensus       839 T~e~~--~gW~---------~----------dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k~  897 (1452)
T PTZ00297        839 TLPIA--AQWK---------R----------DRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSRP  897 (1452)
T ss_pred             HHHhh--CcCc---------c----------CCeEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCCc
Confidence            88743  5664         4          7999999999999999999999999999999999999999999999888


Q ss_pred             eEEEEecCHHHHH-HHHHHcCCCCC--ChhhcChH--------HHHHHHHHHHHhHhccCC-CccccEEEecCCCCCCCC
Q 006530          570 PGAIIVPDKEEVL-MAAKRLSIVHA--DASELSKE--------KTISLLYGELRKWTSKCS-FQIGPIHVVDEPFTVNFL  637 (641)
Q Consensus       570 ~~a~vv~~~~~~~-~~~~~~~~~~~--~~~~~~~~--------~l~~~~~~~l~~~~~~~~-~~~~~i~~~~~~~~~~~~  637 (641)
                      ++|+|+++.+.+. +|++++++...  .....+.+        ++.+.+ +.+.+.+.... +.+++|.+++++|+.+||
T Consensus       898 lvALVvpd~e~l~~~wa~~~gi~~~~~~~~~~~~~el~~~~~~~v~~~i-~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enG  976 (1452)
T PTZ00297        898 IIAIVSPNRDTVEFEWRQSHCMGEGGGPARQLGWTELVAYASSLLTADF-ACIAKENGLHPSNVPEYVHLHPHAFKDHST  976 (1452)
T ss_pred             eEEEEEeCHHHHHHHHHHHcCCCccccccccCCHHHHHHhHHHHHHHHH-HHHHHHhCcCccceeeEEEEeCCCCCCCCC
Confidence            9999999999999 99999887532  11112222        233333 23555555333 555668999999999999


Q ss_pred             ccc
Q 006530          638 CLA  640 (641)
Q Consensus       638 ~l~  640 (641)
                      .||
T Consensus       977 lLT  979 (1452)
T PTZ00297        977 FLT  979 (1452)
T ss_pred             cCC
Confidence            987

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1e-55  Score=492.95  Aligned_cols=488  Identities=24%  Similarity=0.346  Sum_probs=386.5

Q ss_pred             HHHHHhhhhhhhhhhhhhccc-CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q 006530           24 FRVFTRNCVDAVATRIRISRR-NHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN  102 (641)
Q Consensus        24 ~~~~~~~~~~~~~~~~a~~~~-~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~  102 (641)
                      +..+.++.++++|+++++... ++..+++||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~   91 (542)
T PRK06018         12 CHRIIDHAARIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAIC   91 (542)
T ss_pred             HHHHHHHHHHhCCCceEEEeeccCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHHHhcCeEe
Confidence            345566677788889888743 4556889999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhh
Q 006530          103 VVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRE  182 (641)
Q Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (641)
                      +++++.++.+++.++++.++++.++++. ++...+.+.....+.++.++...+.... ...  ...+...|.+++.....
T Consensus        92 v~l~~~~~~~~l~~~l~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~  167 (542)
T PRK06018         92 HTVNPRLFPEQIAWIINHAEDRVVITDL-TFVPILEKIADKLPSVERYVVLTDAAHM-PQT--TLKNAVAYEEWIAEADG  167 (542)
T ss_pred             eccccccCHHHHHHHHhccCCCEEEEcc-ccHHHHHHHHhhCCCccEEEEecccccc-ccc--CccccccHHHHhccCCc
Confidence            9999999999999999999999999985 5556666655555556655554332111 000  01123456665543211


Q ss_pred             hhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHH-HH-HHHHHhhhcCCCCCCEEEEECChhhHHH
Q 006530          183 SRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNL-LH-QIRSLYDIVPAENGDKFLSMLPPWHVYE  260 (641)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l-~~-~~~~~~~~~~~~~~d~~l~~~pl~~~~g  260 (641)
                      .             .......++++++++|||||||.||+|.+||++. .+ ........+++.++|+++..+|++|.++
T Consensus       168 ~-------------~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~  234 (542)
T PRK06018        168 D-------------FAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANS  234 (542)
T ss_pred             c-------------cCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhh
Confidence            0             1123446678999999999999999999999864 32 2233345667889999999999999999


Q ss_pred             HHHhHhhhhcCeeEEec----chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHH
Q 006530          261 RACGYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAF  336 (641)
Q Consensus       261 ~~~~~~~l~~G~~~v~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (641)
                      +...+.++..|+++++.    ++..+++.++++++|++.++|+++..+........                        
T Consensus       235 ~~~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~------------------------  290 (542)
T PRK06018        235 WGIAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEG------------------------  290 (542)
T ss_pred             hHHHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccC------------------------
Confidence            87777788999999875    46788999999999999999999988865432110                        


Q ss_pred             HhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhHHHHHHHcCC
Q 006530          337 KRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGV  416 (641)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l~~~~~~~~~  416 (641)
                                                                         .+++++|.+++||+++++++.+.++.++.
T Consensus       291 ---------------------------------------------------~~~~~lr~~~~~G~~l~~~~~~~~~~~~~  319 (542)
T PRK06018        291 ---------------------------------------------------LKLPHLKMVVCGGSAMPRSMIKAFEDMGV  319 (542)
T ss_pred             ---------------------------------------------------CCcccceEEEEcCCCCCHHHHHHHHHhCC
Confidence                                                               12334599999999999988444444899


Q ss_pred             eeeeccccccccCeeeecCCCC-----------CcccccccCcCCcEEEEeeCCCCccCCCC--CCceEEEecCcccccc
Q 006530          417 KVQVGYGLTESSPVIAARRPTC-----------NVLGSVGHPINHTEIKIVDAETNEVLPAG--SKGIVKVRGSQVMQGY  483 (641)
Q Consensus       417 ~v~~~yG~tE~~~~~~~~~~~~-----------~~~~~~G~~~~~~~v~i~d~~~~~~~~~g--~~Gel~v~g~~~~~gY  483 (641)
                      ++++.||+||++.+...+....           ....++|.|.++++++|+|+ +++.++.+  ..|||+++|+.++.||
T Consensus       320 ~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d~-~~~~~~~~~~~~Gel~i~g~~~~~gy  398 (542)
T PRK06018        320 EVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITDD-AGKELPWDGKTFGRLKVRGPAVAAAY  398 (542)
T ss_pred             CeEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEECC-CCCCCCCCCCceeEEEEecCCcchhh
Confidence            9999999999987655432110           12357899999999999995 56777653  5899999999999999


Q ss_pred             cCCchhhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEE
Q 006530          484 FKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVI  563 (641)
Q Consensus       484 ~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~  563 (641)
                      +++.   ...++.+|||+|||++++++          +|.+++.||.+|+|+. +|++|+|.+||+.+.+||+|.+|+|+
T Consensus       399 ~~~~---~~~~~~~~~~~TGDl~~~~~----------~g~~~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~  464 (542)
T PRK06018        399 YRVD---GEILDDDGFFDTGDVATIDA----------YGYMRITDRSKDVIKS-GGEWISSIDLENLAVGHPKVAEAAVI  464 (542)
T ss_pred             hcCc---ccEecCCcEEEcCCEEEEcC----------CccEEEEecCCCeEEE-CCEEECHHHHHHHHHhCCcceeEEEE
Confidence            9842   33455689999999999999          8999999999999996 99999999999999999999999999


Q ss_pred             ecCCC----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCcc
Q 006530          564 GQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  639 (641)
Q Consensus       564 g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l  639 (641)
                      +.+++    ...++|++.++                ...+.+++.++++++++.|.     .|++|.++++.|.+.+||+
T Consensus       465 ~~~~~~~~~~~~~~v~~~~~----------------~~~~~~~l~~~~~~~l~~~~-----~P~~i~~v~~iP~t~~GKi  523 (542)
T PRK06018        465 GVYHPKWDERPLLIVQLKPG----------------ETATREEILKYMDGKIAKWW-----MPDDVAFVDAIPHTATGKI  523 (542)
T ss_pred             eccCCCcCceeEEEEEeCCC----------------CCCCHHHHHHHHHhhCcccc-----CCcEEEEeccCCCCCcchh
Confidence            98654    45667776543                34567889999999999987     7788999999999999997

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=1.3e-56  Score=586.44  Aligned_cols=466  Identities=18%  Similarity=0.219  Sum_probs=390.6

Q ss_pred             hHHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q 006530           23 GFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN  102 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~  102 (641)
                      .+..+.++++.++|+++|++++++.   +||+||.++++++|+.|.+.|+++|++|+|+++|++++++++|||+++|+++
T Consensus      3096 ~~~~l~~~~a~~~p~~~Av~~~~~~---lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aGa~~ 3172 (3956)
T PRK12467       3096 LVHQLIEAQVARTPEAPALVFGDQQ---LSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAY 3172 (3956)
T ss_pred             cHHHHHHHHHHhCCCcceEeeCCcc---cCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhCcEe
Confidence            4566777788889999999988754   9999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhh
Q 006530          103 VVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRE  182 (641)
Q Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (641)
                      +|++|.++.+++.++++++++++++++. .....+    ....... .+.++                    +.......
T Consensus      3173 vpld~~~p~~rl~~il~~~~~~~vlt~~-~~~~~~----~~~~~~~-~~~~~--------------------~~~~~~~~ 3226 (3956)
T PRK12467       3173 VPLDPEYPRERLAYMIEDSGVKLLLTQA-HLLEQL----PAPAGDT-ALTLD--------------------RLDLNGYS 3226 (3956)
T ss_pred             ecCCCCChHHHHHHHHhCCCCcEEEech-hhhhhc----ccccCCc-eeeec--------------------chhhcccC
Confidence            9999999999999999999999999985 322221    1111111 11111                    00000000


Q ss_pred             hhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHH
Q 006530          183 SRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERA  262 (641)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~  262 (641)
                      ..            .+.....++++++++|||||||.||||+++|+++.+.+.+....+++.++|+++.+.|++|..+..
T Consensus      3227 ~~------------~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~ 3294 (3956)
T PRK12467       3227 EN------------NPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQE 3294 (3956)
T ss_pred             CC------------CCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEEEEecCccHhHHHH
Confidence            00            112345789999999999999999999999999999999999999999999999999999999988


Q ss_pred             HhHhhhhcCeeEEec-----chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHH
Q 006530          263 CGYFIFSRGIELMYT-----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFK  337 (641)
Q Consensus       263 ~~~~~l~~G~~~v~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (641)
                      ..+.+|..|+++++.     ++..+++.+.++++|++..+|+++..+.+...                            
T Consensus      3295 ~~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~---------------------------- 3346 (3956)
T PRK12467       3295 RFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAG---------------------------- 3346 (3956)
T ss_pred             HHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhccc----------------------------
Confidence            889999999999985     46789999999999999999999987754210                            


Q ss_pred             hHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHc-C
Q 006530          338 RIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-G  415 (641)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~-~  415 (641)
                                                                       ...++++|.+++||++++..+ +++.+.+ +
T Consensus      3347 -------------------------------------------------~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~ 3377 (3956)
T PRK12467       3347 -------------------------------------------------GADCASLDIYVFGGEAVPPAAFEQVKRKLKP 3377 (3956)
T ss_pred             -------------------------------------------------ccCCCCceEEEEecCCCCHHHHHHHHHhCCC
Confidence                                                             023455699999999999987 5555656 6


Q ss_pred             CeeeeccccccccCeeeecCCCC-----CcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhh
Q 006530          416 VKVQVGYGLTESSPVIAARRPTC-----NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSAT  490 (641)
Q Consensus       416 ~~v~~~yG~tE~~~~~~~~~~~~-----~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~  490 (641)
                      ..+++.||+||++..++......     ....++|+|++|++++|+| +.++++|.|++|||+|+|+.+++||+|+|+.|
T Consensus      3378 ~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~vp~G~~GEL~i~G~~v~~GY~~~~~~T 3456 (3956)
T PRK12467       3378 RGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVLD-GQLNPVPVGVAGELYIGGVGLARGYHQRPSLT 3456 (3956)
T ss_pred             CEEEeCcccchhEeeeEEEecccccccCCCCCCCccccCCCEEEEEC-CCCCCCCCCCCceEEEcchhhhhhccCCcccc
Confidence            78999999999987665433211     2236799999999999998 56899999999999999999999999999999


Q ss_pred             hhccCCCC-------ccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEE
Q 006530          491 KQALDEDG-------WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVI  563 (641)
Q Consensus       491 ~~~~~~~g-------~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~  563 (641)
                      .++|..++       ||+|||+|++++          ||.|+++||+||+||+ +|++|+|.|||+.|.+||+|.+|+|+
T Consensus      3457 ~~~F~~~p~~~~g~r~yrTGDl~~~~~----------dG~l~~~GR~d~~iki-~G~rIe~~EIE~~l~~~p~V~~a~v~ 3525 (3956)
T PRK12467       3457 AERFVADPFSGSGGRLYRTGDLARYRA----------DGVIEYLGRIDHQVKI-RGFRIELGEIEARLLQHPSVREAVVL 3525 (3956)
T ss_pred             hhhccCCCCCCCCceeeccchhheecC----------CCcEEEeccccceEee-ceEeecHHHHHHHHhhCcccceEEEE
Confidence            99996554       599999999999          9999999999999998 99999999999999999999999999


Q ss_pred             ecC---CCceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCcc
Q 006530          564 GQD---QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  639 (641)
Q Consensus       564 g~~---~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l  639 (641)
                      +.+   .++++++|+++.+                .....++++++++++|+.|+     .|..|+.+++.|.+.||||
T Consensus      3526 ~~~~~~~~~lva~v~~~~~----------------~~~~~~~l~~~l~~~Lp~y~-----vP~~~~~l~~lP~t~~GKi 3583 (3956)
T PRK12467       3526 ARDGAGGKQLVAYVVPADP----------------QGDWRETLRDHLAASLPDYM-----VPAQLLVLAAMPLGPNGKV 3583 (3956)
T ss_pred             EecCCCCcEEEEEEeCCCC----------------CcccHHHHHHHHhccCChhh-----CCCeeeeeccCCCCCCCcc
Confidence            864   4578899987642                23467889999999999999     6678999999999999997

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=1.8e-55  Score=487.22  Aligned_cols=476  Identities=21%  Similarity=0.308  Sum_probs=387.8

Q ss_pred             hhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEEecCCCCCH
Q 006530           32 VDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSS  111 (641)
Q Consensus        32 ~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v~l~~~~~~  111 (641)
                      +..+|+++|+...+   +.+||.||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|++++|+++.++.
T Consensus        15 ~~~~p~~~a~~~~~---~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~   91 (508)
T TIGR02262        15 VEGRGGKTAFIDDI---SSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTA   91 (508)
T ss_pred             hcccCCceEEEeCC---ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeeccCCCCH
Confidence            55678888887765   459999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhhhcccCCCc
Q 006530          112 EELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSN  191 (641)
Q Consensus       112 ~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (641)
                      +++.++++.++++.+++++ .....+.+.....+..+.++......          .....+.++.......        
T Consensus        92 ~~l~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~--------  152 (508)
T TIGR02262        92 DDYAYMLEDSRARVVFVSG-ELLPVIKAALGKSPHLEHRVVVGRPE----------AGEVQLAELLATESEQ--------  152 (508)
T ss_pred             HHHHHHHHhcCCeEEEEch-hhHHHHHHHHhcCCCccEEEEeCCCC----------cccccHHHHhhcCCCc--------
Confidence            9999999999999999985 55555555555555566555543221          1123444443321110        


Q ss_pred             hhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHH-HhhhcCCCCCCEEEEECChhhHHHHHH-hHhhhh
Q 006530          192 DARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRS-LYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFS  269 (641)
Q Consensus       192 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~-~~~~~~~~~~d~~l~~~pl~~~~g~~~-~~~~l~  269 (641)
                           .......++++++++|||||||.||+|.++|+++...+.. ....++++++|+++..+|++|.+++.. .+.++.
T Consensus       153 -----~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~  227 (508)
T TIGR02262       153 -----FKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMS  227 (508)
T ss_pred             -----cCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHH
Confidence                 1123445789999999999999999999999999887765 445668899999999999999999865 455688


Q ss_pred             cCeeEEec----chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhHhccccc
Q 006530          270 RGIELMYT----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCL  345 (641)
Q Consensus       270 ~G~~~v~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (641)
                      .|+++++.    ++..+++.+++++||++.++|.++..+.......                                  
T Consensus       228 ~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~----------------------------------  273 (508)
T TIGR02262       228 VGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLP----------------------------------  273 (508)
T ss_pred             cCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCcccc----------------------------------
Confidence            99988874    4788999999999999999999887664321000                                  


Q ss_pred             ccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHcCCeeeecccc
Q 006530          346 TRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGL  424 (641)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~~~~v~~~yG~  424 (641)
                                                               .....++|.+++||+++++++ +.+.+.++.++++.||+
T Consensus       274 -----------------------------------------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~  312 (508)
T TIGR02262       274 -----------------------------------------AEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGS  312 (508)
T ss_pred             -----------------------------------------ccccccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccc
Confidence                                                     011234488999999999987 55666679999999999


Q ss_pred             ccccCeeeecCCCCCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccCCCCccccCc
Q 006530          425 TESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD  504 (641)
Q Consensus       425 tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGD  504 (641)
                      ||++.....+.......+++|.|+++++++|+| +++.++++|+.|||+++|+.++.||+++++.+...| .++||+|||
T Consensus       313 tE~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d-~~~~~~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~-~~~~~~TGD  390 (508)
T TIGR02262       313 TEMLHIFLSNLPGDVRYGTSGKPVPGYRLRLVG-DGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTF-QGEWTRSGD  390 (508)
T ss_pred             cccCceeecCCccCCCCCCcCCCCCCcEEEEEC-CCCCCCCCCCeeEEEEecCccccccCCCHHHhHhhh-hcCceeccc
Confidence            999877665544444567899999999999999 778999999999999999999999999999998888 589999999


Q ss_pred             eeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCC----CceEEEEecCHHH
Q 006530          505 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEE  580 (641)
Q Consensus       505 l~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~----~~~~a~vv~~~~~  580 (641)
                      ++++++          +|.+++.||.+|+|++ +|++++|.+||+.|.++|+|.++++++.++    +.+.+++++.++.
T Consensus       391 ~~~~~~----------~g~~~~~gR~~d~i~~-~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~  459 (508)
T TIGR02262       391 KYVRND----------DGSYTYAGRTDDMLKV-SGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQ  459 (508)
T ss_pred             eEEEcC----------CccEEEeccccceeee-CCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCC
Confidence            999998          8999999999999998 899999999999999999999999999754    3456777775431


Q ss_pred             HHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          581 VLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       581 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                                   ...+...+++.++++++|+.|+     .++.+..+++.|.+.+||+.
T Consensus       460 -------------~~~~~~~~~i~~~~~~~l~~~~-----~p~~i~~~~~iP~t~~gKi~  501 (508)
T TIGR02262       460 -------------DIDTALETELKEHVKDRLAPYK-----YPRWIVFVDDLPKTATGKIQ  501 (508)
T ss_pred             -------------ccccccHHHHHHHHHHhcccCC-----CCceEEEecCCCCCCCCcEe
Confidence                         0113346788899999999888     67789999999999999973

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=2.2e-56  Score=546.73  Aligned_cols=468  Identities=17%  Similarity=0.225  Sum_probs=386.4

Q ss_pred             hHHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q 006530           23 GFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN  102 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~  102 (641)
                      .+..+.+++++..|+++|++++++.   +||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus       459 ~l~~~~~~~~~~~p~~~Al~~~~~~---~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la~~~~G~~~  535 (1296)
T PRK10252        459 TLSALVAQQAAKTPDAPALADARYQ---FSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAW  535 (1296)
T ss_pred             CHHHHHHHHHHhCCCCeEEEcCCCc---EeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence            4556677778888999999887754   9999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhh
Q 006530          103 VVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRE  182 (641)
Q Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (641)
                      +|+++..+.+.+.++++.++++.+++++ .....+.+    ...++.                     ..+.+.......
T Consensus       536 vpld~~~p~~~~~~~l~~~~~~~~i~~~-~~~~~~~~----~~~~~~---------------------~~~~~~~~~~~~  589 (1296)
T PRK10252        536 LPLDTGYPDDRLKMMLEDARPSLLITTA-DQLPRFAD----VPDLTS---------------------LCYNAPLAPQGA  589 (1296)
T ss_pred             EecCccCHHHHHHHHHHhCCCCEEEECc-chhhhccc----CCCcee---------------------eecccccccccC
Confidence            9999999999999999999999999985 33222211    111110                     000000000000


Q ss_pred             hhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHH
Q 006530          183 SRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERA  262 (641)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~  262 (641)
                                    .......++++++++|||||||.||||+++|+++.+.+.+....+++.++|+++...|++|..++.
T Consensus       590 --------------~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~  655 (1296)
T PRK10252        590 --------------APLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVW  655 (1296)
T ss_pred             --------------CCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeCCcchhhhHH
Confidence                          011223578999999999999999999999999999999999999999999999999999999988


Q ss_pred             HhHhhhhcCeeEEec------chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHH
Q 006530          263 CGYFIFSRGIELMYT------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAF  336 (641)
Q Consensus       263 ~~~~~l~~G~~~v~~------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (641)
                      ..+.++..|+++++.      ++..+.+.++++++|++.++|+++..+.+......                        
T Consensus       656 ~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~------------------------  711 (1296)
T PRK10252        656 EFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEG------------------------  711 (1296)
T ss_pred             HHHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhcccc------------------------
Confidence            889999999999985      36779999999999999999999987765322110                        


Q ss_pred             HhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHcC
Q 006530          337 KRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG  415 (641)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~~  415 (641)
                                                                       ....+.++|.+++||++++..+ +.+.+.++
T Consensus       712 -------------------------------------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~  742 (1296)
T PRK10252        712 -------------------------------------------------ARQSCASLRQVFCSGEALPADLCREWQQLTG  742 (1296)
T ss_pred             -------------------------------------------------ccccCCCccEEEEecCCCCHHHHHHHHhcCC
Confidence                                                             0123345699999999999988 44555568


Q ss_pred             CeeeeccccccccCeeeecCCC-------CCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCch
Q 006530          416 VKVQVGYGLTESSPVIAARRPT-------CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPS  488 (641)
Q Consensus       416 ~~v~~~yG~tE~~~~~~~~~~~-------~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~  488 (641)
                      .++++.||+||++..++.....       ...+.++|.|+++++++|+| +.+++++.|+.|||+|+|+.++.||+++++
T Consensus       743 ~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~~~g~~Gel~i~g~~~~~GY~~~~~  821 (1296)
T PRK10252        743 APLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRILD-ARMRPVPPGVAGDLYLTGIQLAQGYLGRPD  821 (1296)
T ss_pred             CEEEeCCCcchhhheeeeeecccccccccCCCCCCcccccCCCEEEEEC-CCCCCCCCCCceEEEecccccchhhCCCcc
Confidence            9999999999998766544322       22346799999999999999 678999999999999999999999999999


Q ss_pred             hhhhccCC------CCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEE
Q 006530          489 ATKQALDE------DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVV  562 (641)
Q Consensus       489 ~~~~~~~~------~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v  562 (641)
                      .|.+.|..      ++||+|||+|++++          ||.++++||+||+|++ +|++|+|.|||+.|.+||+|.+++|
T Consensus       822 ~t~~~f~~~~~~~~~~~y~TGDl~~~~~----------~G~l~~~GR~d~~ik~-~G~ri~~~eIE~~l~~~~~v~~a~v  890 (1296)
T PRK10252        822 LTASRFIADPFAPGERMYRTGDVARWLD----------DGAVEYLGRSDDQLKI-RGQRIELGEIDRAMQALPDVEQAVT  890 (1296)
T ss_pred             cchhhcccCCCCCCCEEEecCceEEEcC----------CCcEEEecccCCeEEE-eeEEecHHHHHHHHHhCccccceEE
Confidence            99998854      34999999999999          9999999999999998 9999999999999999999999987


Q ss_pred             Eec---------CC-CceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCC
Q 006530          563 IGQ---------DQ-RRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPF  632 (641)
Q Consensus       563 ~g~---------~~-~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~  632 (641)
                      ++.         ++ +.++++|++..+                ...+.++++++++++|+.|+     .|..|+.+++.|
T Consensus       891 ~~~~~~~~~~~~~~~~~lva~v~~~~~----------------~~~~~~~l~~~l~~~Lp~~~-----~P~~~~~~~~lP  949 (1296)
T PRK10252        891 HACVINQAAATGGDARQLVGYLVSQSG----------------LPLDTSALQAQLRERLPPHM-----VPVVLLQLDQLP  949 (1296)
T ss_pred             EEEeccccccCCCCccEEEEEEEcCCC----------------CCCCHHHHHHHHHhhCchhc-----CCcEEEEecCCC
Confidence            653         11 368888887643                23467899999999999999     777899999999


Q ss_pred             CCCCCcc
Q 006530          633 TVNFLCL  639 (641)
Q Consensus       633 ~~~~~~l  639 (641)
                      .+.|||+
T Consensus       950 ~t~~GKi  956 (1296)
T PRK10252        950 LSANGKL  956 (1296)
T ss_pred             CCCCcCh
Confidence            9999997

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.2e-55  Score=491.54  Aligned_cols=459  Identities=18%  Similarity=0.237  Sum_probs=360.3

Q ss_pred             hhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCChhHHHHHHHHHhcCCEEEecCCCCCHHH
Q 006530           35 VATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGV-KPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEE  113 (641)
Q Consensus        35 ~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl-~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v~l~~~~~~~~  113 (641)
                      .|+++|+++.+.   ++||.||.++++++|..|.+.|+ ++||+|+++++|+++++++++||+++|++++|++|.++.++
T Consensus        14 ~p~~~Al~~~~~---~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~~v~l~p~~~~~~   90 (540)
T PRK13388         14 GDDTIAVRYGDR---TWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYVLVGLNTTRRGAA   90 (540)
T ss_pred             cCCceEEEECCc---eeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCEEEEecccCChHH
Confidence            578888877654   49999999999999999999999 89999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhhhcccCCCchh
Q 006530          114 LLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDA  193 (641)
Q Consensus       114 l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (641)
                      +.++++.++++.+++++ +....+.+..  .+.++.++ +.+               ..+.+++......          
T Consensus        91 l~~~l~~~~~~~~i~~~-~~~~~~~~~~--~~~~~~i~-~~~---------------~~~~~~~~~~~~~----------  141 (540)
T PRK13388         91 LAADIRRADCQLLVTDA-EHRPLLDGLD--LPGVRVLD-VDT---------------PAYAELVAAAGAL----------  141 (540)
T ss_pred             HHHHHHhcCCCEEEECh-hhhHHHHhhc--ccCceEEE-ccc---------------hhhhhhhccccCc----------
Confidence            99999999999999985 4433333321  12223222 110               1233333211100          


Q ss_pred             hcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHHHhHh-hhhcCe
Q 006530          194 RKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYF-IFSRGI  272 (641)
Q Consensus       194 ~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~-~l~~G~  272 (641)
                         .+.....++++++++|||||||.||||.++|+++...+......+++.++|+++..+|++|..++...+. ++..|+
T Consensus       142 ---~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~  218 (540)
T PRK13388        142 ---TPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGA  218 (540)
T ss_pred             ---CCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCc
Confidence               1112346799999999999999999999999999988888888889999999999999999998876544 688999


Q ss_pred             eEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhHhcccccccCC
Q 006530          273 ELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQ  349 (641)
Q Consensus       273 ~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (641)
                      ++++.   ++..++..++++++|++..+|..+..+.......                                      
T Consensus       219 ~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~--------------------------------------  260 (540)
T PRK13388        219 AVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPERP--------------------------------------  260 (540)
T ss_pred             EEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCc--------------------------------------
Confidence            99874   4788999999999999999999887765321000                                      


Q ss_pred             CCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhHHHHHHHcCCeeeeccccccccC
Q 006530          350 KQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSP  429 (641)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l~~~~~~~~~~v~~~yG~tE~~~  429 (641)
                                                           .....+++. ++||+..+....++.+.++.++++.||+||++.
T Consensus       261 -------------------------------------~~~~~~l~~-~~G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~  302 (540)
T PRK13388        261 -------------------------------------DDADNPLRV-AFGNEASPRDIAEFSRRFGCQVEDGYGSSEGAV  302 (540)
T ss_pred             -------------------------------------cccccceEE-EECCCCCHHHHHHHHHHhCCceecccccccccc
Confidence                                                 000112243 345544444457777778999999999999987


Q ss_pred             eeeecCCCCCcccccccCcCCcEEE-----------EeeCCCCccC-CCCCCceEEEe-cCcccccccCCchhhhhccCC
Q 006530          430 VIAARRPTCNVLGSVGHPINHTEIK-----------IVDAETNEVL-PAGSKGIVKVR-GSQVMQGYFKNPSATKQALDE  496 (641)
Q Consensus       430 ~~~~~~~~~~~~~~~G~~~~~~~v~-----------i~d~~~~~~~-~~g~~Gel~v~-g~~~~~gY~~~~~~~~~~~~~  496 (641)
                      ++....  ....+++|.|++|+++.           ++| ++++.+ +.+..|||+++ |+.++.||+++++.+.+.| .
T Consensus       303 ~~~~~~--~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d-~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~-~  378 (540)
T PRK13388        303 IVVREP--GTPPGSIGRGAPGVAIYNPETLTECAVARFD-AHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERM-R  378 (540)
T ss_pred             eeecCC--CCCCCCCCCCCCCcEEEcCCCCccccceecc-CccccccCCCcceEEEEecCCcccccccCChHHHHHHh-h
Confidence            665432  23457899999997653           222 233333 34678999998 9999999999999999888 4


Q ss_pred             CCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC----ceEE
Q 006530          497 DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGA  572 (641)
Q Consensus       497 ~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----~~~a  572 (641)
                      +|||+|||+|++++          ||.+++.||++|+|++ +|++|+|.+||+++.+||+|.+|+|++.+++    .+.+
T Consensus       379 ~g~~~TGD~~~~~~----------dg~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~  447 (540)
T PRK13388        379 HGMYWSGDLAYRDA----------DGWIYFAGRTADWMRV-DGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMA  447 (540)
T ss_pred             cCceeccceEEEcC----------CCcEEEeccCCceEEE-CCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEE
Confidence            89999999999999          8999999999999997 9999999999999999999999999998754    4556


Q ss_pred             EEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHH--HHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          573 IIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGE--LRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       573 ~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                      +|++..+                ...+.+++.++++.+  |+.|+     .|+.+.++++.|.+.+||+.
T Consensus       448 ~v~~~~~----------------~~~~~~~l~~~l~~~~~l~~~~-----~P~~~~~v~~iP~t~~GKv~  496 (540)
T PRK13388        448 ALVLRDG----------------ATFDPDAFAAFLAAQPDLGTKA-----WPRYVRIAADLPSTATNKVL  496 (540)
T ss_pred             EEEECCC----------------CcCCHHHHHHHHHhhccCCccc-----CCcEEEEeccCCCCCcceee
Confidence            6766543                245667888888764  77777     77889999999999999973

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-55  Score=486.53  Aligned_cols=470  Identities=22%  Similarity=0.285  Sum_probs=378.6

Q ss_pred             HHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEEec
Q 006530           26 VFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVR  105 (641)
Q Consensus        26 ~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v~l  105 (641)
                      ..+++++.+.|+++|+...+.   ++||.||.+++.++|.+|.+.|+++|++|+++++|+++++++++||+++|++++|+
T Consensus         6 ~~~~~~~~~~~~~~a~~~~~~---~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~l   82 (497)
T PRK06145          6 ASIAFHARRTPDRAALVYRDQ---EISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPI   82 (497)
T ss_pred             HHHHHHHHHCCCceEEEECCc---ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEec
Confidence            344555566788888877653   49999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhhhc
Q 006530          106 GSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRK  185 (641)
Q Consensus       106 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (641)
                      ++..+.+++.++++.++++.+++++. ..... ..      ....+..... ..           ..+..+.. .... .
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~i~~~~-~~~~~-~~------~~~~~~~~~~-~~-----------~~~~~~~~-~~~~-~  140 (497)
T PRK06145         83 NYRLAADEVAYILGDAGAKLLLVDEE-FDAIV-AL------ETPKIVIDAA-AQ-----------ADSRRLAQ-GGLE-I  140 (497)
T ss_pred             ccccCHHHHHHHHHhcCCcEEEEccc-hhhhh-hc------ccceEEecCc-cc-----------chhHHHhc-cCCC-C
Confidence            99999999999999999999999853 22211 10      0111111100 00           01111111 0000 0


Q ss_pred             ccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHHH-h
Q 006530          186 AFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-G  264 (641)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~-~  264 (641)
                                 .......++++++++|||||||.||+|.+||+++...+......+++..+++++..+|++|.+++.. .
T Consensus       141 -----------~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  209 (497)
T PRK06145        141 -----------PPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPG  209 (497)
T ss_pred             -----------CCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHH
Confidence                       1112456789999999999999999999999999876666666778899999999999999998865 4


Q ss_pred             HhhhhcCeeEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhHhc
Q 006530          265 YFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYE  341 (641)
Q Consensus       265 ~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (641)
                      +.++..|+++++.   ++..+++.++++++|.+.++|+++..+.......                              
T Consensus       210 ~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~------------------------------  259 (497)
T PRK06145        210 IAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRD------------------------------  259 (497)
T ss_pred             HHHHhccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCcc------------------------------
Confidence            5668899998874   5788999999999999999999998886531110                              


Q ss_pred             ccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHc-CCeee
Q 006530          342 GFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQ  419 (641)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~-~~~v~  419 (641)
                                                                   ...++++|.+++||++++..+ +.+.+.+ +.+++
T Consensus       260 ---------------------------------------------~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~  294 (497)
T PRK06145        260 ---------------------------------------------RFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYI  294 (497)
T ss_pred             ---------------------------------------------ccccccceEEEecCCCCCHHHHHHHHHHcCCCceE
Confidence                                                         012334589999999999987 5555666 67899


Q ss_pred             eccccccccCeeeecCC--CCCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccCCC
Q 006530          420 VGYGLTESSPVIAARRP--TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED  497 (641)
Q Consensus       420 ~~yG~tE~~~~~~~~~~--~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~  497 (641)
                      +.||+||++...+....  .....+++|.|++++++++.++ +++.++.|+.|||+++|++++.||++++..+.+.| .+
T Consensus       295 ~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~-~~~~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~-~~  372 (497)
T PRK06145        295 DAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIADG-AGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAF-YG  372 (497)
T ss_pred             EeecCcccCCcceeccCccccccCCCcccCCCCceEEEECC-CCCCCCCCCceEEEEECcchhhhhcCChHHHHHHH-hC
Confidence            99999999876554332  2234578999999999999994 57889999999999999999999999999999888 48


Q ss_pred             CccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC----ceEEE
Q 006530          498 GWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAI  573 (641)
Q Consensus       498 g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----~~~a~  573 (641)
                      +||+|||++++++          +|.++++||++|+|++ +|++++|.+||+.|.++|+|.+++|++.+++    .+.++
T Consensus       373 ~~~~TGDl~~~~~----------~g~l~~~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~  441 (497)
T PRK06145        373 DWFRSGDVGYLDE----------EGFLYLTDRKKDMIIS-GGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAV  441 (497)
T ss_pred             CCeeccceEEEcC----------CCcEEEeccccceEEe-CCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEE
Confidence            9999999999999          9999999999999997 9999999999999999999999999997664    46778


Q ss_pred             EecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          574 IVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       574 vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                      ++++++                ...+.+++.++++++|+.|+     .|++|.++++.|.+.+||+.
T Consensus       442 v~~~~~----------------~~~~~~~l~~~~~~~l~~~~-----~p~~i~~v~~iP~t~~GKi~  487 (497)
T PRK06145        442 VVLNPG----------------ATLTLEALDRHCRQRLASFK-----VPRQLKVRDELPRNPSGKVL  487 (497)
T ss_pred             EEECCC----------------CCCCHHHHHHHHHHhhhcCC-----CCCEEEEeccCCCCCccccc
Confidence            887542                23567899999999999988     77889999999999999974

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.5e-55  Score=483.11  Aligned_cols=440  Identities=24%  Similarity=0.328  Sum_probs=364.2

Q ss_pred             hhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEEecCCCCCHHH
Q 006530           34 AVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEE  113 (641)
Q Consensus        34 ~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v~l~~~~~~~~  113 (641)
                      +-+++++++.++   +++||+||.++++++|..|.     ++|+|+++++|+++++++++||+++|++++|+++..+.++
T Consensus        12 ~~~~~~a~~~~~---~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~   83 (471)
T PRK07787         12 AADIADAVRIGG---RVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVAE   83 (471)
T ss_pred             ccCCceEEEeCC---cEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCChHH
Confidence            445777777766   45999999999999999985     5799999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhhhcccCCCchh
Q 006530          114 LLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDA  193 (641)
Q Consensus       114 l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (641)
                      +.+++++++++.+++++....       ...+.+.   ...              ....+                    
T Consensus        84 l~~~l~~~~~~~il~~~~~~~-------~~~~~~~---~~~--------------~~~~~--------------------  119 (471)
T PRK07787         84 RRHILADSGAQAWLGPAPDDP-------AGLPHVP---VRL--------------HARSW--------------------  119 (471)
T ss_pred             HHHHHHhcCCCEEEecCCccc-------cccccee---eec--------------ccccc--------------------
Confidence            999999999999999852110       0001000   000              00000                    


Q ss_pred             hcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHHH-hHhhhhcCe
Q 006530          194 RKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGI  272 (641)
Q Consensus       194 ~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~  272 (641)
                         .......++++++++|||||||.||+|.++|+++...+......+++.++++++..+|++|.+|+.. .+.++..|+
T Consensus       120 ---~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~  196 (471)
T PRK07787        120 ---HRYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGN  196 (471)
T ss_pred             ---ccCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCC
Confidence               0112235789999999999999999999999999998888888888999999999999999999876 566799999


Q ss_pred             eEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhHhcccccccCC
Q 006530          273 ELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQ  349 (641)
Q Consensus       273 ~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (641)
                      ++++.   ++..+++.++ +++|++.++|+++..+.+....                                       
T Consensus       197 ~~~~~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~---------------------------------------  236 (471)
T PRK07787        197 RFVHTGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPEA---------------------------------------  236 (471)
T ss_pred             EEEecCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCccc---------------------------------------
Confidence            99874   5788999999 9999999999999887652100                                       


Q ss_pred             CCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHcCCeeeecccccccc
Q 006530          350 KQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESS  428 (641)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~~~~v~~~yG~tE~~  428 (641)
                                                           ...+.++|.+++||+++++.+ +.+.+.++.++++.||+||++
T Consensus       237 -------------------------------------~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  279 (471)
T PRK07787        237 -------------------------------------ARALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETL  279 (471)
T ss_pred             -------------------------------------cccccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccC
Confidence                                                 023445599999999999987 445555789999999999998


Q ss_pred             CeeeecCCCCCcccccccCcCCcEEEEeeCCCCccCC-CCC-CceEEEecCcccccccCCchhhhhccCCCCccccCcee
Q 006530          429 PVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLP-AGS-KGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIG  506 (641)
Q Consensus       429 ~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~-~g~-~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~  506 (641)
                      ...+........++++|.|+++++++|+|++ +.+++ .|+ .|||+++|+.++.||+++++.+.+.|..+|||+|||+|
T Consensus       280 ~~~~~~~~~~~~~~~vG~~~~g~~~~i~d~~-~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg  358 (471)
T PRK07787        280 ITLSTRADGERRPGWVGLPLAGVETRLVDED-GGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVA  358 (471)
T ss_pred             cceecCCCCcccCCcccccCCCcEEEEECCC-CCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceE
Confidence            7655544444556789999999999999954 67776 444 89999999999999999999999999879999999999


Q ss_pred             EEcCCCCCCCccccCceEEEeccc-cceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC----ceEEEEecCHHHH
Q 006530          507 WIAPHHSRGRSRRCGGVLVLEGRA-KDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEV  581 (641)
Q Consensus       507 ~~~~~~~~~~~~~~~G~l~i~GR~-~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----~~~a~vv~~~~~~  581 (641)
                      ++++          ||.+++.||+ +|+++. +|++|+|.+||+.|..+|.|.+++|++.+++    .+.++|++.    
T Consensus       359 ~~~~----------dg~l~~~GR~~d~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~----  423 (471)
T PRK07787        359 VVDP----------DGMHRIVGRESTDLIKS-GGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGA----  423 (471)
T ss_pred             EEcC----------CCCEEEeCCCCceeEee-CCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeC----
Confidence            9999          9999999996 789986 9999999999999999999999999998654    466777763    


Q ss_pred             HHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          582 LMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       582 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                                    ...+.+++.++++++|+.|+     +|.+|+++++.|.+.+||+-
T Consensus       424 --------------~~~~~~~l~~~l~~~l~~~~-----~P~~i~~~~~iP~~~~GKi~  463 (471)
T PRK07787        424 --------------DDVAADELIDFVAQQLSVHK-----RPREVRFVDALPRNAMGKVL  463 (471)
T ss_pred             --------------CCCCHHHHHHHHHhhccccc-----CCcEEEEeccCCCCCCcccc
Confidence                          23577889999999999998     77889999999999999973

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.2e-55  Score=488.34  Aligned_cols=492  Identities=22%  Similarity=0.356  Sum_probs=381.4

Q ss_pred             hHHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q 006530           23 GFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN  102 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~  102 (641)
                      .+.+.+.+++..+|+++|+.+.+.   .+||.||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        24 ~i~~~l~~~a~~~p~~~a~~~~~~---~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~  100 (557)
T PRK07059         24 SLADLLEESFRQYADRPAFICMGK---AITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVV  100 (557)
T ss_pred             CHHHHHHHHHHHcCCCceEEEcCc---eeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCeEE
Confidence            455666777778899998887664   49999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCC-CC-C-------------CCccCC
Q 006530          103 VVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKS-SV-A-------------PDIVEE  167 (641)
Q Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~-------------~~~~~~  167 (641)
                      +|++|..+.+++.++++.++++.+++++ .+...+...... ...+.++....... .. .             ......
T Consensus       101 v~v~~~~~~~~~~~~~~~~~~~~vi~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (557)
T PRK07059        101 VNVNPLYTPRELEHQLKDSGAEAIVVLE-NFATTVQQVLAK-TAVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAWSL  178 (557)
T ss_pred             eccCcccCHHHHHHHHHccCceEEEEch-hhHHHHHHhhcc-cCCceeEEecccccccccccccccccccccccccccCC
Confidence            9999999999999999999999999985 444434333222 22333322211000 00 0             000000


Q ss_pred             CCcccHHHHHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcC----C
Q 006530          168 IPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP----A  243 (641)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~----~  243 (641)
                      .....+++++..+....            .......++++++++|||||||.||+|.++|.+++..+......+.    .
T Consensus       179 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~  246 (557)
T PRK07059        179 PGHVRFNDALAEGARQT------------FKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEK  246 (557)
T ss_pred             CCcccHHHHhhccCCCC------------CCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccc
Confidence            11234444443322111            1223456889999999999999999999999999876544332221    1


Q ss_pred             ---CCCCEEEEECChhhHHHHHH-hHhhhhcCeeEEec----chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhc
Q 006530          244 ---ENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTS  315 (641)
Q Consensus       244 ---~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  315 (641)
                         ...+.+++.+|++|.+++.. .+.++..|++.++.    ++..+++.++++++|.+..+|.++..+.......    
T Consensus       247 ~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~----  322 (557)
T PRK07059        247 KPRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFD----  322 (557)
T ss_pred             cCCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcC----
Confidence               12357788999999988754 45567777776653    4677899999999999999999998876531100    


Q ss_pred             cHHHHHHHHHHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCcee
Q 006530          316 SAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKA  395 (641)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~  395 (641)
                                                                                             ...+.++|.
T Consensus       323 -----------------------------------------------------------------------~~~~~~l~~  331 (557)
T PRK07059        323 -----------------------------------------------------------------------KLDFSKLIV  331 (557)
T ss_pred             -----------------------------------------------------------------------cCCchhheE
Confidence                                                                                   012234488


Q ss_pred             EEeecCCCChhH-HHHHHHcCCeeeeccccccccCeeeecCCC-CCcccccccCcCCcEEEEeeCCCCccCCCCCCceEE
Q 006530          396 GVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVK  473 (641)
Q Consensus       396 i~~gG~~l~~~l-~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~-~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~  473 (641)
                      ++.||++++..+ +++.+.++.++++.||+||++.++..+... ...++++|.|+++++++|+| +++.+++.|+.|||+
T Consensus       332 ~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~~~~~g~~Gel~  410 (557)
T PRK07059        332 ANGGGMAVQRPVAERWLEMTGCPITEGYGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSIRD-DDGNDLPLGEPGEIC  410 (557)
T ss_pred             EEeccccCCHHHHHHHHHHhCCCeeeccccccccchhhcCCCCCCCcCCcccCccCCcEEEEEC-CCCCCCCCCCceEEE
Confidence            999999999887 556666799999999999998776554432 23457899999999999998 568899999999999


Q ss_pred             EecCcccccccCCchhhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhc
Q 006530          474 VRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR  553 (641)
Q Consensus       474 v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~  553 (641)
                      ++|+.++.||+++++.+...|..+|||+|||++++++          ||.+++.||++|+|++ +|++|+|.+||+.+.+
T Consensus       411 v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~----------~g~~~~~GR~~~~i~~-~G~~i~p~~iE~~l~~  479 (557)
T PRK07059        411 IRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDE----------RGYTKIVDRKKDMILV-SGFNVYPNEIEEVVAS  479 (557)
T ss_pred             EeCCccchhhhcCHHHHhhhcccCCceecCcEEEEcC----------CCcEEEecccccceEE-CCEEEcHHHHHHHHHh
Confidence            9999999999999999998887899999999999999          8999999999999997 8999999999999999


Q ss_pred             CcccceEEEEecCCC----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEec
Q 006530          554 SSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVD  629 (641)
Q Consensus       554 ~p~V~~~~v~g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~  629 (641)
                      ||+|.+++|++.+++    .+.++|+...                 ...+.++++++++++++.|+     +|.+|.+++
T Consensus       480 ~~~V~~~~v~~~~~~~~ge~~~~~v~~~~-----------------~~~~~~~l~~~~~~~l~~~~-----~P~~i~~v~  537 (557)
T PRK07059        480 HPGVLEVAAVGVPDEHSGEAVKLFVVKKD-----------------PALTEEDVKAFCKERLTNYK-----RPKFVEFRT  537 (557)
T ss_pred             CCceeEEEEEecccCCCCeeEEEEEEeCC-----------------CCCCHHHHHHHHHHhccccc-----CCcEEEEec
Confidence            999999999997654    4556666432                 23566889999999999998     778899999


Q ss_pred             CCCCCCCCccc
Q 006530          630 EPFTVNFLCLA  640 (641)
Q Consensus       630 ~~~~~~~~~l~  640 (641)
                      +.|.+.+||+.
T Consensus       538 ~~P~t~~GK~~  548 (557)
T PRK07059        538 ELPKTNVGKIL  548 (557)
T ss_pred             cCCCCccccee
Confidence            99999999973

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.8e-55  Score=486.53  Aligned_cols=463  Identities=20%  Similarity=0.211  Sum_probs=369.3

Q ss_pred             HHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEE
Q 006530           24 FRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINV  103 (641)
Q Consensus        24 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v  103 (641)
                      +....++.++.+|+++++..+++   .+||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus        37 ~~~~~~~~a~~~p~~~a~~~~~~---~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v~v  113 (516)
T PRK13383         37 PYTLLAVTAARWPGRTAIIDDDG---ALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADVV  113 (516)
T ss_pred             HHHHHHHHHHHCCCCcEEEeCCC---cEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEEE
Confidence            44445666677889998877654   499999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhh
Q 006530          104 VRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRES  183 (641)
Q Consensus       104 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (641)
                      |+++.++.+++.++++.++++.+++++ .+...+.....      .++.+...               .. .  . ..  
T Consensus       114 pl~~~~~~~~l~~~l~~~~~~~ii~~~-~~~~~~~~~~~------~~~~~~~~---------------~~-~--~-~~--  165 (516)
T PRK13383        114 PISTEFRSDALAAALRAHHISTVVADN-EFAERIAGADD------AVAVIDPA---------------TA-G--A-EE--  165 (516)
T ss_pred             EcCccCCHHHHHHHHhcCCCCEEEEch-hHHHHHHhhhc------ceEEeccc---------------hh-h--h-hc--
Confidence            999999999999999999999999985 44444433211      11111100               00 0  0 00  


Q ss_pred             hcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHH--HHHHHHhhhcCCCCCCEEEEECChhhHHHH
Q 006530          184 RKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLL--HQIRSLYDIVPAENGDKFLSMLPPWHVYER  261 (641)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~--~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~  261 (641)
                                   ....+...++.++++|||||||.||+|.++|....  .........+++.++|+++..+|++|.+++
T Consensus       166 -------------~~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~  232 (516)
T PRK13383        166 -------------SGGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGL  232 (516)
T ss_pred             -------------CCCCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhH
Confidence                         00011124556789999999999999999997432  222223345678889999999999999999


Q ss_pred             HHhHhhhhcCeeEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHh
Q 006530          262 ACGYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKR  338 (641)
Q Consensus       262 ~~~~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (641)
                      ...+.++..|++++..   ++..+++.++++++|.+.++|.++..+........                          
T Consensus       233 ~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--------------------------  286 (516)
T PRK13383        233 GMLMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVR--------------------------  286 (516)
T ss_pred             HHHHHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhcccccc--------------------------
Confidence            8877889999999873   67889999999999999999999988765321100                          


Q ss_pred             HhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHcCCe
Q 006530          339 IYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVK  417 (641)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~~~~  417 (641)
                                                                     ....++++|.+++||+++++.+ +++.+.++..
T Consensus       287 -----------------------------------------------~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~  319 (516)
T PRK13383        287 -----------------------------------------------ARNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDI  319 (516)
T ss_pred             -----------------------------------------------ccCCCCceEEEEECCCCCCHHHHHHHHHHcCch
Confidence                                                           0023445699999999999987 5566668999


Q ss_pred             eeeccccccccCeeeecCCC-CCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccCC
Q 006530          418 VQVGYGLTESSPVIAARRPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE  496 (641)
Q Consensus       418 v~~~yG~tE~~~~~~~~~~~-~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~  496 (641)
                      +++.||+||++..+...... ...++++|.|+++++++|+| +++++++.|+.|||+++|+.++.||++++..   .+ .
T Consensus       320 v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~~Y~~~~~~---~~-~  394 (516)
T PRK13383        320 LYNGYGSTEVGIGALATPADLRDAPETVGKPVAGCPVRILD-RNNRPVGPRVTGRIFVGGELAGTRYTDGGGK---AV-V  394 (516)
T ss_pred             hhhcccccccccceeccccccccCCCcccCCCCCcEEEEEC-CCCCCCCCCCceEEEEecCcccccccCCchh---he-e
Confidence            99999999998665543322 23467899999999999999 4578999999999999999999999987642   22 4


Q ss_pred             CCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC----ceEE
Q 006530          497 DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGA  572 (641)
Q Consensus       497 ~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----~~~a  572 (641)
                      +|||+|||+|++++          +|++++.||++|+|++ +|++|+|.+||..|.+||+|.+++|++.+++    .+.+
T Consensus       395 ~g~~~TGDl~~~d~----------~G~l~i~GR~~~~i~~-~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~  463 (516)
T PRK13383        395 DGMTSTGDMGYLDN----------AGRLFIVGREDDMIIS-GGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAA  463 (516)
T ss_pred             cCceecceeEEEcC----------CccEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEE
Confidence            89999999999999          8999999999999997 9999999999999999999999999997654    4567


Q ss_pred             EEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          573 IIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       573 ~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                      +|++.++                .+.+.++++++++++++.|+     ++.+|.++++.|.+.+||+.
T Consensus       464 ~v~~~~~----------------~~~~~~~l~~~~~~~l~~~~-----~p~~i~~v~~iP~t~~gKi~  510 (516)
T PRK13383        464 FVVLHPG----------------SGVDAAQLRDYLKDRVSRFE-----QPRDINIVSSIPRNPTGKVL  510 (516)
T ss_pred             EEEECCC----------------CCCCHHHHHHHHHHhcccCC-----CCcEEEEeCCCCCCCCCcCc
Confidence            7776542                23566889999999998888     77889999999999999973

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=1.2e-54  Score=484.39  Aligned_cols=493  Identities=23%  Similarity=0.342  Sum_probs=381.4

Q ss_pred             hHHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q 006530           23 GFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN  102 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~  102 (641)
                      .+...+++++...|+++++...+   +++||.||.++++++|.+|.+.|+.+||+|+++++|+++++++++||+++|+++
T Consensus        22 ~~~~~~~~~~~~~p~~~a~~~~~---~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~   98 (541)
T TIGR03205        22 TLPDLLSKAAADYGPRPALEFRD---RPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARV   98 (541)
T ss_pred             CHHHHHHHHHHHcCCCceEEECC---cEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEE
Confidence            45555666777788998887755   459999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEecChh-hHHHHHHhhcccccccEEEEEeCCCCCCC-CC---ccCCCCcccHHHHH
Q 006530          103 VVRGSRSSSEELLHIYNHSESVALAVENPE-FFNRIAETLCSKAAMRFIILLWGKKSSVA-PD---IVEEIPVFSYDEII  177 (641)
Q Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~---~~~~~~~~~~~~~~  177 (641)
                      +|++|..+.+++.++++.++++.+++++.. ....+.+.... ..+..+++......... ..   .........+++++
T Consensus        99 v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (541)
T TIGR03205        99 VHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEK-GLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFV  177 (541)
T ss_pred             EecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhc-ccceEEEEecccccccccccccccCCCcccccHHHHH
Confidence            999999999999999999999999998521 11112121111 11233333322111000 00   00012234566665


Q ss_pred             HhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhc------CCCCCCEEEE
Q 006530          178 DLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIV------PAENGDKFLS  251 (641)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~------~~~~~d~~l~  251 (641)
                      +.....             .......++++++++|||||||.||+|.++|+++....... ..+      .....+++++
T Consensus       178 ~~~~~~-------------~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~  243 (541)
T TIGR03205       178 KGAAAP-------------AEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVIC  243 (541)
T ss_pred             hcCCCC-------------CCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEEE
Confidence            422110             11234567899999999999999999999999987654422 111      2234578999


Q ss_pred             ECChhhHHHHHH-hHhhhhcCeeEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q 006530          252 MLPPWHVYERAC-GYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALI  327 (641)
Q Consensus       252 ~~pl~~~~g~~~-~~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  327 (641)
                      .+|++|.+++.. .+.++..|++++..   ++..+++.++++++|++.++|+++..+.+.....                
T Consensus       244 ~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------  307 (541)
T TIGR03205       244 VLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLE----------------  307 (541)
T ss_pred             eccHHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCcccc----------------
Confidence            999999988765 45568889888775   5788999999999999999999998775421000                


Q ss_pred             HHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH
Q 006530          328 RISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI  407 (641)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l  407 (641)
                                                                                 ...+.++|.++.||++++.++
T Consensus       308 -----------------------------------------------------------~~~~~~l~~i~~gg~~~~~~~  328 (541)
T TIGR03205       308 -----------------------------------------------------------KRDLSSLATIGSGGAPLPVEV  328 (541)
T ss_pred             -----------------------------------------------------------ccCccccceEEEccccCCHHH
Confidence                                                                       012334589999999999988


Q ss_pred             HHHH-HHcCCeeeeccccccccCeeeecCC-CCCcccccccCcCCcEEEEee-CCCCccCCCCCCceEEEecCccccccc
Q 006530          408 DLFY-EAIGVKVQVGYGLTESSPVIAARRP-TCNVLGSVGHPINHTEIKIVD-AETNEVLPAGSKGIVKVRGSQVMQGYF  484 (641)
Q Consensus       408 ~~~~-~~~~~~v~~~yG~tE~~~~~~~~~~-~~~~~~~~G~~~~~~~v~i~d-~~~~~~~~~g~~Gel~v~g~~~~~gY~  484 (641)
                      .+++ +.++.++++.||+||++........ ....++++|.|++++.++|.+ .+++++++.|+.|||+++|+.++.||+
T Consensus       329 ~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~~Gel~v~~~~~~~gy~  408 (541)
T TIGR03205       329 ANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYW  408 (541)
T ss_pred             HHHHHHHhCCCeecccccccCCcccccCCCCCCCCCCCcceeccCceeEEEecCCCCccCCCCCeeEEEEecCCcccccc
Confidence            5554 4569999999999999876654432 223467899999999988865 356788999999999999999999999


Q ss_pred             CCchhhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEe
Q 006530          485 KNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG  564 (641)
Q Consensus       485 ~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g  564 (641)
                      ++++.+.+.|. ++||+|||++++++          +|.+++.||.+|+|+. +|++|+|.+||+.+.+|++|.+++|++
T Consensus       409 ~~~~~~~~~~~-~~~~~TGD~~~~~~----------~g~l~i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~  476 (541)
T TIGR03205       409 NRPEESAEAFV-GDRFLTGDIGYMDT----------DGYFFLVDRKKDMIIS-GGFNVYPQMIEQAIYEHPGVQEVIVIG  476 (541)
T ss_pred             CChhhhHhhhc-cCCcccCceEEEcC----------CceEEEEccccCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEe
Confidence            99999988884 78999999999999          8999999999999997 999999999999999999999999999


Q ss_pred             cCCC----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          565 QDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       565 ~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                      .+++    .+.++++++.+.               ...+.+++.++++++|+.|+     +|++|.++++.|.+.+||+.
T Consensus       477 ~~~~~~~~~~~~~v~~~~~~---------------~~~~~~~l~~~~~~~l~~~~-----~P~~i~~~~~iP~t~~gK~~  536 (541)
T TIGR03205       477 IPDQYRGEAAKAFVKLRPGA---------------KPFSLDELRAFLAGKLGKHE-----LPVAVEFVDELPRTPVGKLS  536 (541)
T ss_pred             cCCcccCceEEEEEEECCCC---------------CcCCHHHHHHHHHhhccccc-----CCcEEEEeccCCCCccccee
Confidence            7654    456777776431               12467889999999999998     77889999999999999973

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=8.2e-56  Score=587.64  Aligned_cols=468  Identities=19%  Similarity=0.217  Sum_probs=393.3

Q ss_pred             hHHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q 006530           23 GFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN  102 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~  102 (641)
                      .+....++++.++|+++|+..+++   ++||+||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus       512 ~~~~~~~~~a~~~p~~~A~~~~~~---~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la~~~aG~~~  588 (5163)
T PRK12316        512 GVHRLFEEQVERTPEAPALAFGEE---TLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAY  588 (5163)
T ss_pred             CHHHHHHHHHHHCCCCeEEEeCCc---eEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEE
Confidence            466777788889999999988764   49999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhh
Q 006530          103 VVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRE  182 (641)
Q Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (641)
                      +|++|.++.+++.++++++++++++++. .....+    ....... ++.....                 ...+.....
T Consensus       589 vpld~~~p~~rl~~il~~~~~~~~l~~~-~~~~~~----~~~~~~~-~~~~~~~-----------------~~~~~~~~~  645 (5163)
T PRK12316        589 VPLDPEYPAERLAYMLEDSGVQLLLSQS-HLGRKL----PLAAGVQ-VLDLDRP-----------------AAWLEGYSE  645 (5163)
T ss_pred             eccCccCcHHHHHHHHHhCCCCEEEECh-hhhhhC----CcccCce-EEEecCc-----------------chhhccCCC
Confidence            9999999999999999999999999985 222211    1111111 1111100                 000000000


Q ss_pred             hhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHH
Q 006530          183 SRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERA  262 (641)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~  262 (641)
                      .             .......++++++++|||||||.||||+++|+++.+.+.+....+++.++|+++..+|++|..++.
T Consensus       646 ~-------------~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~p~~fd~~~~  712 (5163)
T PRK12316        646 E-------------NPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVW  712 (5163)
T ss_pred             C-------------CCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCCCCEEEeeCCeehHHHHH
Confidence            0             112345688999999999999999999999999999999999999999999999999999999998


Q ss_pred             HhHhhhhcCeeEEec------chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHH
Q 006530          263 CGYFIFSRGIELMYT------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAF  336 (641)
Q Consensus       263 ~~~~~l~~G~~~v~~------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (641)
                      ..+.+|..|+++++.      ++..+.+.++++++|++.++|+++..+.+...                           
T Consensus       713 ~~~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~---------------------------  765 (5163)
T PRK12316        713 EFFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDED---------------------------  765 (5163)
T ss_pred             HHHHHHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccc---------------------------
Confidence            889999999999985      46789999999999999999999988754210                           


Q ss_pred             HhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHc-
Q 006530          337 KRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-  414 (641)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~-  414 (641)
                                                                        ...+.++|.+++||+++++.+ +.+.+.+ 
T Consensus       766 --------------------------------------------------~~~~~~l~~~~~gGe~l~~~~~~~~~~~~~  795 (5163)
T PRK12316        766 --------------------------------------------------VASCTSLRRIVCSGEALPADAQEQVFAKLP  795 (5163)
T ss_pred             --------------------------------------------------cccCCCccEEEEeeccCCHHHHHHHHHhCC
Confidence                                                              023455699999999999987 5555655 


Q ss_pred             CCeeeeccccccccCeeeecC--CCCCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhh
Q 006530          415 GVKVQVGYGLTESSPVIAARR--PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ  492 (641)
Q Consensus       415 ~~~v~~~yG~tE~~~~~~~~~--~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~  492 (641)
                      +.++++.||+||++..++...  .......++|+|++|++++|+| ++++++|.|+.|||+|+|+.++.||+++|+.|.+
T Consensus       796 ~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GYl~~~~~t~~  874 (5163)
T PRK12316        796 QAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYILD-ANLEPVPVGVLGELYLAGRGLARGYHGRPGLTAE  874 (5163)
T ss_pred             CCeEEeCcCcChheeeeeEEecccccCCCCCCccccCCCEEEEEC-CCCCCCCCCCceEEEecccccChhhCCChhhhhh
Confidence            789999999999985443322  2234456899999999999999 4588999999999999999999999999999999


Q ss_pred             ccC------CCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecC
Q 006530          493 ALD------EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD  566 (641)
Q Consensus       493 ~~~------~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~  566 (641)
                      .|.      .++||+|||+|++++          ||.|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+
T Consensus       875 ~f~~~~~~~~~~~y~TGDl~~~~~----------dG~l~~~GR~d~~ik~-~G~rI~~~EIE~~l~~~p~V~~a~V~~~~  943 (5163)
T PRK12316        875 RFVPSPFVAGERMYRTGDLARYRA----------DGVIEYAGRIDHQVKL-RGLRIELGEIEARLLEHPWVREAAVLAVD  943 (5163)
T ss_pred             hCCCCCCCCCCeeEecCccEEECC----------CCCEEeecccCCEEEE-ceEEcChHHHHHHHHhCCCcceEEEEEcC
Confidence            884      345999999999999          9999999999999998 99999999999999999999999999999


Q ss_pred             CCceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCcc
Q 006530          567 QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  639 (641)
Q Consensus       567 ~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l  639 (641)
                      .+.++|+|++..+                .....++++++++++|+.|+     .|+.|+++++.|.+.|||+
T Consensus       944 ~~~lva~vv~~~~----------------~~~~~~~l~~~l~~~Lp~y~-----vP~~i~~v~~lP~t~~GKi  995 (5163)
T PRK12316        944 GKQLVGYVVLESE----------------GGDWREALKAHLAASLPEYM-----VPAQWLALERLPLTPNGKL  995 (5163)
T ss_pred             CCeEEEEEEccCC----------------CCCCHHHHHHHHHhhCCCcc-----CCCeEEEHhhCCCCCCCCh
Confidence            8899999998643                23567899999999999999     7788999999999999997

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=2.7e-55  Score=531.68  Aligned_cols=490  Identities=22%  Similarity=0.300  Sum_probs=385.1

Q ss_pred             hHHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q 006530           23 GFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN  102 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~  102 (641)
                      .+.+..+++++++|+++|+.+.++  +++||+||.++++++|+.|.+ ++++||+|+++++|+++++++++||+++|+++
T Consensus       616 ~l~~~~~~~a~~~p~~~a~~~~~~--~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~la~~~~G~v~  692 (1146)
T PRK08633        616 PLAEAWIDTAKRNWSRLAVADSTG--GELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALANLALLLAGKVP  692 (1146)
T ss_pred             CHHHHHHHHHHhcCCCcEEEcCCC--CcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHHHHHHHcCCEE
Confidence            344556667788999999876432  459999999999999999987 58999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhc--ccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhh
Q 006530          103 VVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLC--SKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLG  180 (641)
Q Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (641)
                      +|+++..+.+++.+++++++++.+++++ ...+.+.+...  ..+....++...+.....       .....+.+.....
T Consensus       693 v~l~~~~~~~~~~~~l~~~~~~~vi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~  764 (1146)
T PRK08633        693 VNLNYTASEAALKSAIEQAQIKTVITSR-KFLEKLKNKGFDLELPENVKVIYLEDLKAKI-------SKVDKLTALLAAR  764 (1146)
T ss_pred             EEeCCCcCHHHHHHHHHHcCCCEEEEcH-HHHHHHhccCCchhcccCceEEEeehhcccc-------chhHHHHHHHHhc
Confidence            9999999999999999999999999985 44444432110  111222333332211100       0011222221111


Q ss_pred             hhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHH
Q 006530          181 RESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYE  260 (641)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g  260 (641)
                      .. +..    ...  ........++|+++++|||||||.||+|.+||+++...+......++..++|++++.+|++|.++
T Consensus       765 ~~-~~~----~~~--~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g  837 (1146)
T PRK08633        765 LL-PAR----LLK--RLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFG  837 (1146)
T ss_pred             cC-CHH----HHH--hhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHHHHh
Confidence            00 000    000  00013456899999999999999999999999999999888888888999999999999999999


Q ss_pred             HHH-hHhhhhcCeeEEec----chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHH
Q 006530          261 RAC-GYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTA  335 (641)
Q Consensus       261 ~~~-~~~~l~~G~~~v~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (641)
                      +.. .+.++..|+++++.    ++..+.+.++++++|++.++|+++..+.+.....                        
T Consensus       838 ~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------  893 (1146)
T PRK08633        838 LTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLH------------------------  893 (1146)
T ss_pred             HHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccC------------------------
Confidence            876 66778999998873    4678999999999999999999998776521100                        


Q ss_pred             HHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHc
Q 006530          336 FKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI  414 (641)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~  414 (641)
                                                                         ...++++|.+++||+++++++ +.+.+.+
T Consensus       894 ---------------------------------------------------~~~~~~lr~~~~gg~~~~~~~~~~~~~~~  922 (1146)
T PRK08633        894 ---------------------------------------------------PLMFASLRLVVAGAEKLKPEVADAFEEKF  922 (1146)
T ss_pred             ---------------------------------------------------cccCCCeeeEEEcCCcCCHHHHHHHHHHh
Confidence                                                               023455699999999999998 5556667


Q ss_pred             CCeeeeccccccccCeeeecCCC----------CCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCccccccc
Q 006530          415 GVKVQVGYGLTESSPVIAARRPT----------CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYF  484 (641)
Q Consensus       415 ~~~v~~~yG~tE~~~~~~~~~~~----------~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~  484 (641)
                      |.++++.||+||++.++....+.          ...++++|.|+||++++|+|++++++++.|+.|||+++|+.++.||+
T Consensus       923 g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~ 1002 (1146)
T PRK08633        923 GIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKGYL 1002 (1146)
T ss_pred             CCCeecccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCccCCCCCceEEEEcCCCcccccc
Confidence            99999999999998776654322          13467899999999999999888999999999999999999999999


Q ss_pred             CCchhhhhccCC---CCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCc--ccce
Q 006530          485 KNPSATKQALDE---DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSS--LIRQ  559 (641)
Q Consensus       485 ~~~~~~~~~~~~---~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p--~V~~  559 (641)
                      ++++.+.+.|..   +|||+|||+|++++          ||.+++.||.||+|++ +|++|+|.|||+.+.+||  .+.+
T Consensus      1003 ~~~~~t~~~~~~~~~~~~~~TGD~~~~~~----------~g~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~~~~~~ 1071 (1146)
T PRK08633       1003 GDPEKTAEVIKDIDGIGWYVTGDKGHLDE----------DGFLTITDRYSRFAKI-GGEMVPLGAVEEELAKALGGEEVV 1071 (1146)
T ss_pred             CCccchHHHhhcCCCCCeEECCCEEEEcC----------CceEEEEecccchhhh-CcEEECHHHHHHHHHhccCCCCce
Confidence            999999888742   38999999999999          9999999999999997 999999999999999999  5678


Q ss_pred             EEEEecCCCc----eEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHH-HHHhHhccCCCccccEEEecCCCCC
Q 006530          560 IVVIGQDQRR----PGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTV  634 (641)
Q Consensus       560 ~~v~g~~~~~----~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~i~~~~~~~~~  634 (641)
                      ++|++.+|+.    +.+++++.                   +.+.+++++++++ .+++|+     .|+.|+++++.|.+
T Consensus      1072 ~~v~~~~~~~~g~~~~~~v~~~-------------------~~~~~~l~~~~~~~~l~~~~-----~P~~i~~~~~iP~t 1127 (1146)
T PRK08633       1072 FAVTAVPDEKKGEKLVVLHTCG-------------------AEDVEELKRAIKESGLPNLW-----KPSRYFKVEALPLL 1127 (1146)
T ss_pred             EEEEeccCCCCCcEEEEEEecC-------------------ccCHHHHHHHHHhcCCCccc-----CCcEEEEecCcCCC
Confidence            9999987754    45555542                   2355778887775 477777     77789999999999


Q ss_pred             CCCccc
Q 006530          635 NFLCLA  640 (641)
Q Consensus       635 ~~~~l~  640 (641)
                      .+||+-
T Consensus      1128 ~~GKi~ 1133 (1146)
T PRK08633       1128 GSGKLD 1133 (1146)
T ss_pred             CCCCCc
Confidence            999973

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.3e-55  Score=493.73  Aligned_cols=484  Identities=20%  Similarity=0.248  Sum_probs=370.0

Q ss_pred             hHHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q 006530           23 GFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN  102 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~  102 (641)
                      .+.+.+.+.+.++|+++|++.++.   ++||+||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        38 tl~~~l~~~a~~~p~~~Ai~~~~~---~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G~~~  114 (600)
T PRK08279         38 SLGDVFEEAAARHPDRPALLFEDQ---SISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVV  114 (600)
T ss_pred             cHHHHHHHHHHhCCCCcEEEeCCC---cccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence            455556666677899999888764   49999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhh
Q 006530          103 VVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRE  182 (641)
Q Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (641)
                      +++++..+.+++.++++.++++++|+++ +....+.+..........++...+....         ....+.++......
T Consensus       115 v~l~~~~~~~~l~~~l~~~~~~~li~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~  184 (600)
T PRK08279        115 ALLNTQQRGAVLAHSLNLVDAKHLIVGE-ELVEAFEEARADLARPPRLWVAGGDTLD---------DPEGYEDLAAAAAG  184 (600)
T ss_pred             eecCCCCCHHHHHHHHHhcCCCEEEECh-HHHHHHHHHhhhhcccceEEEecCcccc---------ccccHHHHhhhccc
Confidence            9999999999999999999999999985 5555555444333332223222211110         01234444432221


Q ss_pred             hhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHH
Q 006530          183 SRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERA  262 (641)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~  262 (641)
                      .+...        ........++++++|+|||||||.||||.+||+++.+.+.++...+++.++|+++..+|++|.+++.
T Consensus       185 ~~~~~--------~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~~  256 (600)
T PRK08279        185 APTTN--------PASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGT  256 (600)
T ss_pred             CCccC--------CCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhHH
Confidence            11100        0112344678999999999999999999999999999999888889999999999999999999988


Q ss_pred             HhHh-hhhcCeeEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHh
Q 006530          263 CGYF-IFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKR  338 (641)
Q Consensus       263 ~~~~-~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (641)
                      ..+. ++..|+++++.   ++..+++.++++++|++..+|+++..+........                          
T Consensus       257 ~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~--------------------------  310 (600)
T PRK08279        257 VAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPT--------------------------  310 (600)
T ss_pred             HHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCcc--------------------------
Confidence            6554 47888888884   56789999999999999999999887764211000                          


Q ss_pred             HhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHcCC-
Q 006530          339 IYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGV-  416 (641)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~~~-  416 (641)
                                                                       ....+++.  ++|+.++..+ +++.+.++. 
T Consensus       311 -------------------------------------------------~~~~~l~~--~~g~~l~~~~~~~~~~~~~~~  339 (600)
T PRK08279        311 -------------------------------------------------DRDHRLRL--MIGNGLRPDIWDEFQQRFGIP  339 (600)
T ss_pred             -------------------------------------------------ccCcceeE--EecCCCCHHHHHHHHHHhCcc
Confidence                                                             01112244  3466787766 667777765 


Q ss_pred             eeeeccccccccCeeeecCCCCCcccccccCcC----CcEEEEeeCCC--------C--ccCCCCCCceEE--EecCccc
Q 006530          417 KVQVGYGLTESSPVIAARRPTCNVLGSVGHPIN----HTEIKIVDAET--------N--EVLPAGSKGIVK--VRGSQVM  480 (641)
Q Consensus       417 ~v~~~yG~tE~~~~~~~~~~~~~~~~~~G~~~~----~~~v~i~d~~~--------~--~~~~~g~~Gel~--v~g~~~~  480 (641)
                      .+++.||+||++..+.. .  ...++++|.+.+    +..+...+++.        +  ..++.|+.|||+  +.++.++
T Consensus       340 ~l~~~YG~tE~~~~~~~-~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~Gel~~~i~~~~~~  416 (600)
T PRK08279        340 RILEFYAASEGNVGFIN-V--FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRGPF  416 (600)
T ss_pred             eeeeeecccccceeecc-c--CCCCcccccccccccccceeeeeccCcCceeeCCCCccccCCCCCceeEEEEecCcccc
Confidence            59999999998754432 2  234456776655    33332222111        1  357889999998  7799999


Q ss_pred             ccccCCchhhhhccC------CCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcC
Q 006530          481 QGYFKNPSATKQALD------EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRS  554 (641)
Q Consensus       481 ~gY~~~~~~~~~~~~------~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~  554 (641)
                      .|| +++..+...|.      .++||+|||+|++++          ||.+++.||.+|+|++ +|++|+|.|||+.+.+|
T Consensus       417 ~GY-~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~----------dG~l~~~GR~~d~ik~-~G~~i~p~eIE~~l~~~  484 (600)
T PRK08279        417 DGY-TDPEASEKKILRDVFKKGDAWFNTGDLMRDDG----------FGHAQFVDRLGDTFRW-KGENVATTEVENALSGF  484 (600)
T ss_pred             ccc-CCchhhHHHHhhcccCCCCceEeecceEEEcC----------CccEEEecccCCeEEE-CCcccCHHHHHHHHhcC
Confidence            999 88888877652      368999999999999          9999999999999998 99999999999999999


Q ss_pred             cccceEEEEecCCC-----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEec
Q 006530          555 SLIRQIVVIGQDQR-----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVD  629 (641)
Q Consensus       555 p~V~~~~v~g~~~~-----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~  629 (641)
                      |+|.+|+|++.+++     ...++|++..+                ...+.++++++++++|+.|+     .|+.|++++
T Consensus       485 p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~----------------~~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~  543 (600)
T PRK08279        485 PGVEEAVVYGVEVPGTDGRAGMAAIVLADG----------------AEFDLAALAAHLYERLPAYA-----VPLFVRLVP  543 (600)
T ss_pred             CCcceEEEEEeecCCCCCccceeEEEecCC----------------ccCCHHHHHHHHHhhCcccc-----CCeEEEeec
Confidence            99999999987532     23355554422                34577899999999999999     778899999


Q ss_pred             CCCCCCCCccc
Q 006530          630 EPFTVNFLCLA  640 (641)
Q Consensus       630 ~~~~~~~~~l~  640 (641)
                      +.|.+.+||+.
T Consensus       544 ~lP~t~~GKi~  554 (600)
T PRK08279        544 ELETTGTFKYR  554 (600)
T ss_pred             CCCCCcchhhh
Confidence            99999999973

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.7e-54  Score=485.83  Aligned_cols=494  Identities=22%  Similarity=0.278  Sum_probs=379.4

Q ss_pred             hHHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q 006530           23 GFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN  102 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~  102 (641)
                      .+...+++++..+|+++++.+.++   .+||.||.++++++|..|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus        34 ~l~~~l~~~a~~~p~~~al~~~~~---~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  110 (567)
T PRK06178         34 PLTEYLRAWARERPQRPAIIFYGH---VITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVH  110 (567)
T ss_pred             cHHHHHHHHHHHCCCceEEEECCc---eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHHHHHhCeEE
Confidence            466666667778899998877664   49999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCC-CCCCC----cc---CCCCcccHH
Q 006530          103 VVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKS-SVAPD----IV---EEIPVFSYD  174 (641)
Q Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~----~~---~~~~~~~~~  174 (641)
                      +|++|..+.+++.++++.++++++++++ ...+.+.+..... .++.+++...... .....    ..   .......+.
T Consensus       111 v~l~p~~~~~~~~~~l~~~~~~~ii~~~-~~~~~l~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (567)
T PRK06178        111 VPVSPLFREHELSYELNDAGAEVLLALD-QLAPVVEQVRAET-SLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAI  188 (567)
T ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEcc-chHHHHHHhhccC-CcceEEEeccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999986 5555555443332 3344443321110 00000    00   000011222


Q ss_pred             HHHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhh-hcCCCCCCEEEEEC
Q 006530          175 EIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD-IVPAENGDKFLSML  253 (641)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~-~~~~~~~d~~l~~~  253 (641)
                      ++.+........          .......++++++++|||||||.||+|.+||++++..+..... ...+.++|++++++
T Consensus       189 ~~~~~~~~~~~~----------~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l~~~  258 (567)
T PRK06178        189 DLLPALRACTAP----------VPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFL  258 (567)
T ss_pred             cHHHHhhccccc----------cccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEEEec
Confidence            232221111100          1123356789999999999999999999999999876655433 35678899999999


Q ss_pred             ChhhHHHHHH-hHhhhhcCeeEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 006530          254 PPWHVYERAC-GYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRI  329 (641)
Q Consensus       254 pl~~~~g~~~-~~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  329 (641)
                      |++|++|+.. .+.++..|+++++.   ++..++..++++++|.+..+|..+..+........                 
T Consensus       259 p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~-----------------  321 (567)
T PRK06178        259 PEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAE-----------------  321 (567)
T ss_pred             chHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCC-----------------
Confidence            9999999864 56679999999985   47889999999999999999988877654210000                 


Q ss_pred             hHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeE--EeecCCCChhH
Q 006530          330 SFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAG--VSGGGSLPMHI  407 (641)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i--~~gG~~l~~~l  407 (641)
                                                                                ..+..++.+  .+.++.+++.+
T Consensus       322 ----------------------------------------------------------~~l~~l~~~~~~~~~~~~~~~~  343 (567)
T PRK06178        322 ----------------------------------------------------------YDLSSLRQVRVVSFVKKLNPDY  343 (567)
T ss_pred             ----------------------------------------------------------CCcchheeeeeccccccCCHHH
Confidence                                                                      011122443  34457888887


Q ss_pred             HH-HHHHcCCeeee-ccccccccCeeeecCCC-------CCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCc
Q 006530          408 DL-FYEAIGVKVQV-GYGLTESSPVIAARRPT-------CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQ  478 (641)
Q Consensus       408 ~~-~~~~~~~~v~~-~yG~tE~~~~~~~~~~~-------~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~  478 (641)
                      .+ +.+.+|..++. .||+||++..+......       ...++++|.|++|++++++|++++.+++.|+.|||+++|++
T Consensus       344 ~~~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~~~g~~Gel~v~g~~  423 (567)
T PRK06178        344 RQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVVRTPS  423 (567)
T ss_pred             HHHHHHHhCCcccccccccccccccceeccccccCccccccCCcccccccCCcEEEEEcCCCCCcCCCCCceEEEEECCc
Confidence            44 44556776665 79999987654433211       13456799999999999999888999999999999999999


Q ss_pred             ccccccCCchhhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccc
Q 006530          479 VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIR  558 (641)
Q Consensus       479 ~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~  558 (641)
                      ++.||+++++.+...| .+|||+|||++++++          ||.++++||++|+|+. +|++|+|.+||+++.++|+|.
T Consensus       424 v~~gY~~~~~~~~~~~-~dg~~~TGDl~~~~~----------~g~l~i~GR~~d~i~~-~G~~i~~~eiE~~l~~~~~v~  491 (567)
T PRK06178        424 LLKGYWNKPEATAEAL-RDGWLHTGDIGKIDE----------QGFLHYLGRRKEMLKV-NGMSVFPSEVEALLGQHPAVL  491 (567)
T ss_pred             ccccccCChhhhhhcc-cCCceeecceEEEec----------CCeEEEEecccccEEE-CCEEECHHHHHHHHHhCCCee
Confidence            9999999999998887 489999999999998          8999999999999997 999999999999999999999


Q ss_pred             eEEEEecCCC----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCC
Q 006530          559 QIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTV  634 (641)
Q Consensus       559 ~~~v~g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~  634 (641)
                      +++|++.+++    .+.++|+++++                ...+.++++++++++++.|+     .|. ++++++.|.+
T Consensus       492 ~~~v~~~~~~~~g~~~~~~v~~~~~----------------~~~~~~~l~~~~~~~l~~~~-----~p~-i~~v~~iP~t  549 (567)
T PRK06178        492 GSAVVGRPDPDKGQVPVAFVQLKPG----------------ADLTAAALQAWCRENMAVYK-----VPE-IRIVDALPMT  549 (567)
T ss_pred             EEEEEcCcCcccCcceEEEEEeCCC----------------CcCCHHHHHHHHHhcCcccC-----Cce-EEEeccCCCC
Confidence            9999997653    46678877643                23567889999999999888     554 8889999999


Q ss_pred             CCCccc
Q 006530          635 NFLCLA  640 (641)
Q Consensus       635 ~~~~l~  640 (641)
                      .+||+.
T Consensus       550 ~~GKv~  555 (567)
T PRK06178        550 ATGKVR  555 (567)
T ss_pred             Ccccee
Confidence            999973

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.1e-54  Score=480.25  Aligned_cols=474  Identities=19%  Similarity=0.211  Sum_probs=362.8

Q ss_pred             hhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEEecCCCCC
Q 006530           31 CVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSS  110 (641)
Q Consensus        31 ~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v~l~~~~~  110 (641)
                      ++...|+++|+...++. +++||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++++++.++
T Consensus         6 ~a~~~p~~~a~~~~~~~-~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~~~~   84 (501)
T PRK13390          6 HAQIAPDRPAVIVAETG-EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHLT   84 (501)
T ss_pred             hhhhCCCCcEEEecCCC-eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccccCCC
Confidence            34557888887654322 56999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhhhcccCCC
Q 006530          111 SEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDS  190 (641)
Q Consensus       111 ~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (641)
                      .+++.+++..++++.+++++ ...........   .....+...... .         ....+++......         
T Consensus        85 ~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~---~~~~~~~~~~~~-~---------~~~~~~~~~~~~~---------  141 (501)
T PRK13390         85 APEADYIVGDSGARVLVASA-ALDGLAAKVGA---DLPLRLSFGGEI-D---------GFGSFEAALAGAG---------  141 (501)
T ss_pred             HHHHHHHHHhcCCcEEEEcc-hhhhHHHHhhh---ccceEEEecCcc-c---------ccccHHHHhcccC---------
Confidence            99999999999999999975 32222221111   111111111100 0         0122332221100         


Q ss_pred             chhhcccccCCCCCCCEEEEEeCCCCCCCchhHHh--hHHHHHHHH----HHHhhhcCCCCCCEEEEECChhhHHHHHHh
Q 006530          191 NDARKHYKYETIGSDDIATYVYTSGTTGNPKGVML--THKNLLHQI----RSLYDIVPAENGDKFLSMLPPWHVYERACG  264 (641)
Q Consensus       191 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~--sh~~l~~~~----~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~  264 (641)
                              ......+++++|+|||||||.||||.+  +|.++....    ......+.+..++++++.+|++|.+++...
T Consensus       142 --------~~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~  213 (501)
T PRK13390        142 --------PRLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWC  213 (501)
T ss_pred             --------CCCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHH
Confidence                    001122357999999999999999995  455544321    112334678889999999999999987655


Q ss_pred             HhhhhcCeeEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhHhc
Q 006530          265 YFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYE  341 (641)
Q Consensus       265 ~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (641)
                      +..+..|+++++.   ++..+++.++++++|++.++|+++..+.........                            
T Consensus       214 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~----------------------------  265 (501)
T PRK13390        214 SMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRT----------------------------  265 (501)
T ss_pred             HHHHhcCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcc----------------------------
Confidence            5556789998874   578999999999999999999999888642111000                            


Q ss_pred             ccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhHHH-HHHHcCCeeee
Q 006530          342 GFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGVKVQV  420 (641)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l~~-~~~~~~~~v~~  420 (641)
                                                                   ...+.++|.+++||++++..+.+ +.+.++.++++
T Consensus       266 ---------------------------------------------~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~  300 (501)
T PRK13390        266 ---------------------------------------------RYDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYE  300 (501)
T ss_pred             ---------------------------------------------cCChhhhheEEEcCCCCCHHHHHHHHHhcCCceee
Confidence                                                         01123348899999999998844 44556889999


Q ss_pred             ccccccccCeeeecCCC-CCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccCC--C
Q 006530          421 GYGLTESSPVIAARRPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE--D  497 (641)
Q Consensus       421 ~yG~tE~~~~~~~~~~~-~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~--~  497 (641)
                      .||+||+++++...... ...++++|.|+++ .++|+| +++++++.|+.|||+++|++++.||+++++.+.+.|..  +
T Consensus       301 ~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g-~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~  378 (501)
T PRK13390        301 YYSSTEAHGMTFIDSPDWLAHPGSVGRSVLG-DLHICD-DDGNELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHP  378 (501)
T ss_pred             eecccccCceEEecchhhccCCCCcCCcccc-eEEEEC-CCCCCCCCCCceEEEEecCCccccccCChhhhHHhhccCCC
Confidence            99999998655443322 2345789999999 799998 56889999999999999999999999999999888743  6


Q ss_pred             CccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC----ceEEE
Q 006530          498 GWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAI  573 (641)
Q Consensus       498 g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----~~~a~  573 (641)
                      +|++|||+|++++          ||.+++.||.+|+|+. +|++|+|.+||+.|.+||+|.|++|++.+++    .+.++
T Consensus       379 ~w~~tGDl~~~~~----------dg~l~~~gR~~~~i~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~  447 (501)
T PRK13390        379 FWTTVGDLGSVDE----------DGYLYLADRKSFMIIS-GGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAV  447 (501)
T ss_pred             ceEEcCceEEECC----------CCeEEEeeccccceeE-CCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEE
Confidence            7999999999999          9999999999999997 9999999999999999999999999998764    45677


Q ss_pred             EecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          574 IVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       574 vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                      +++..+.             .......++++++++++|+.|+     .|++|+++++.|.+.+||+.
T Consensus       448 v~~~~~~-------------~~~~~~~~~l~~~~~~~l~~~~-----~P~~~~~~~~iP~t~~GKi~  496 (501)
T PRK13390        448 IQLVEGI-------------RGSDELARELIDYTRSRIAHYK-----APRSVEFVDELPRTPTGKLV  496 (501)
T ss_pred             EEecCCC-------------CcchhhHHHHHHHHHHhcccCC-----CCcEEEEeccCCCCCcccee
Confidence            7765321             0011224688899999999888     77889999999999999973

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=1.8e-54  Score=485.27  Aligned_cols=495  Identities=20%  Similarity=0.281  Sum_probs=372.9

Q ss_pred             HHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEEec
Q 006530           26 VFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVR  105 (641)
Q Consensus        26 ~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v~l  105 (641)
                      .++++.+..+|+++|+..++   +++||+||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|++++|+
T Consensus        24 ~~~~~~~~~~p~~~a~~~~~---~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l  100 (567)
T PLN02479         24 WFLERAAVVHPTRKSVVHGS---VRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAVVNCV  100 (567)
T ss_pred             HHHHHHHhhCCCceEEEECC---ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhCCcEEEEe
Confidence            33445566788888887655   459999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccc-------cccEEEEEeCCCCCC-CCCccCCCCcccHHHHH
Q 006530          106 GSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKA-------AMRFIILLWGKKSSV-APDIVEEIPVFSYDEII  177 (641)
Q Consensus       106 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~  177 (641)
                      ++..+.+++.++++.++++.+++++ .+.+...+......       ....++...+..... ........+...|.+++
T Consensus       101 ~~~~~~~~l~~~l~~~~~~~ii~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (567)
T PLN02479        101 NIRLNAPTIAFLLEHSKSEVVMVDQ-EFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKGAIEYEKFL  179 (567)
T ss_pred             ccccCHHHHHHHHhhcCceEEEEch-hhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccccCcccHHHHH
Confidence            9999999999999999999999985 44433333222111       112233332211000 00000011234566665


Q ss_pred             HhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhh
Q 006530          178 DLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH  257 (641)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~  257 (641)
                      .......            ........+++++++|||||||.||||.+||++++.........+++.+++++++.+|++|
T Consensus       180 ~~~~~~~------------~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h  247 (567)
T PLN02479        180 ETGDPEF------------AWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMFH  247 (567)
T ss_pred             hcccccc------------ccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEecchhh
Confidence            4321110            0011223456778999999999999999999998776666666677888999999999999


Q ss_pred             HHHHHHhHhh-hhcCeeEEec--chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHH
Q 006530          258 VYERACGYFI-FSRGIELMYT--AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYT  334 (641)
Q Consensus       258 ~~g~~~~~~~-l~~G~~~v~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (641)
                      +.++...+.. +..|.++++.  ++..+.+.++++++|++.++|.++..+........                      
T Consensus       248 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------  305 (567)
T PLN02479        248 CNGWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSET----------------------  305 (567)
T ss_pred             hhhHHHHHHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcc----------------------
Confidence            9997665443 5666666553  58899999999999999999999988865321100                      


Q ss_pred             HHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhHHHHHHHc
Q 006530          335 AFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAI  414 (641)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l~~~~~~~  414 (641)
                                                                          ...+++++.++++|+++++.+.+.++..
T Consensus       306 ----------------------------------------------------~~~~~~l~~~~~~G~~~~~~~~~~~~~~  333 (567)
T PLN02479        306 ----------------------------------------------------ILPLPRVVHVMTAGAAPPPSVLFAMSEK  333 (567)
T ss_pred             ----------------------------------------------------cccccceeEEEEcCCCCCHHHHHHHHhc
Confidence                                                                0123445889999999999886655666


Q ss_pred             CCeeeeccccccccCeeeecC--C-------C-C-CcccccccCcCCcE-EEEeeCCCCccCCCC--CCceEEEecCccc
Q 006530          415 GVKVQVGYGLTESSPVIAARR--P-------T-C-NVLGSVGHPINHTE-IKIVDAETNEVLPAG--SKGIVKVRGSQVM  480 (641)
Q Consensus       415 ~~~v~~~yG~tE~~~~~~~~~--~-------~-~-~~~~~~G~~~~~~~-v~i~d~~~~~~~~~g--~~Gel~v~g~~~~  480 (641)
                      +.++++.||+||+++.+..+.  +       . . ....+.|.+.++++ ++|+|++++.+++.+  +.|||+++|++++
T Consensus       334 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~  413 (567)
T PLN02479        334 GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVM  413 (567)
T ss_pred             CCceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccchh
Confidence            889999999999864433221  0       0 0 11135677888876 888887778888764  5799999999999


Q ss_pred             ccccCCchhhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceE
Q 006530          481 QGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQI  560 (641)
Q Consensus       481 ~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~  560 (641)
                      .||+++++.+.+.| .+|||+|||+|++++          +|.++++||.+|+|+. +|++|+|.+||..|.+||.|.++
T Consensus       414 ~GY~~~~~~t~~~~-~~g~~~TGDl~~~~~----------~g~l~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~  481 (567)
T PLN02479        414 KGYLKNPKANEEAF-ANGWFHSGDLGVKHP----------DGYIEIKDRSKDIIIS-GGENISSLEVENVVYTHPAVLEA  481 (567)
T ss_pred             hhhhcCcccccchh-cCCceecceeEEEcC----------CccEEEeccccceEEe-CCEEEcHHHHHHHHHhCccccee
Confidence            99999999999998 489999999999999          8999999999999997 99999999999999999999999


Q ss_pred             EEEecCCC----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCC
Q 006530          561 VVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNF  636 (641)
Q Consensus       561 ~v~g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~  636 (641)
                      +|++.+++    .+++++++..+..           .+......++++++++++|+.|+     .|+.+.+ ++.|.+.+
T Consensus       482 ~v~~~~~~~~~~~~~~~v~~~~~~~-----------~~~~~~~~~~l~~~~~~~l~~~~-----~P~~~~~-~~iP~t~~  544 (567)
T PLN02479        482 SVVARPDERWGESPCAFVTLKPGVD-----------KSDEAALAEDIMKFCRERLPAYW-----VPKSVVF-GPLPKTAT  544 (567)
T ss_pred             eEEeccchhcCceeEEEEEecCccc-----------ccchhhhHHHHHHHHHhhccccc-----CCceEEe-ccCCCCCc
Confidence            99998654    5778888765310           00112345789999999999998     5666666 57888999


Q ss_pred             Ccc
Q 006530          637 LCL  639 (641)
Q Consensus       637 ~~l  639 (641)
                      ||+
T Consensus       545 gKv  547 (567)
T PLN02479        545 GKI  547 (567)
T ss_pred             cCe
Confidence            997

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=1.3e-54  Score=479.90  Aligned_cols=468  Identities=21%  Similarity=0.207  Sum_probs=372.8

Q ss_pred             HHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEEec
Q 006530           26 VFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVR  105 (641)
Q Consensus        26 ~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v~l  105 (641)
                      ..+++.+...|+++|+...+.   ++||+||.+++.++|..|.+.|+++||+|+++++|+.+++++++||+++|++++|+
T Consensus         4 ~~l~~~a~~~p~~~a~~~~~~---~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~~   80 (502)
T TIGR01734         4 EAIQAFAETYPQTIAYRYQGQ---ELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPV   80 (502)
T ss_pred             HHHHHHHHHCCCceEEEcCCc---EEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEeCC
Confidence            445555667788888877664   49999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhhhc
Q 006530          106 GSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRK  185 (641)
Q Consensus       106 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (641)
                      ++.++.+++.++++..+++.+++++. .....       .... ++.+                 ...+++.....  +.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~ii~~~~-~~~~~-------~~~~-~~~~-----------------~~~~~~~~~~~--~~  132 (502)
T TIGR01734        81 DTSIPSERIEMIIEAAGPELVIHTAE-LSIDA-------VGTQ-IITL-----------------SALEQAETSGG--PV  132 (502)
T ss_pred             CCcChHHHHHHHHHhcCCCEEEeccc-ccccc-------cCCc-eEEc-----------------hHhhhhhhhcC--Cc
Confidence            99999999999999999999999853 21111       0111 1100                 11111111110  00


Q ss_pred             ccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHHHhH
Q 006530          186 AFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGY  265 (641)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~  265 (641)
                                 .......+++.++++|||||||.||+|.++|+++...+.+....++...+++++..+|++|..++...+
T Consensus       133 -----------~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~  201 (502)
T TIGR01734       133 -----------SFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVMDLY  201 (502)
T ss_pred             -----------cccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHHHHH
Confidence                       011234678999999999999999999999999999888888888889999999999999999988888


Q ss_pred             hhhhcCeeEEec------chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhH
Q 006530          266 FIFSRGIELMYT------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRI  339 (641)
Q Consensus       266 ~~l~~G~~~v~~------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (641)
                      .++..|+++++.      ++..++..+.+++++.+..+|.++..+.......                            
T Consensus       202 ~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~----------------------------  253 (502)
T TIGR01734       202 PCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFN----------------------------  253 (502)
T ss_pred             HHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccc----------------------------
Confidence            899999999875      3567889999999999999999987654321000                            


Q ss_pred             hcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHc-CCe
Q 006530          340 YEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVK  417 (641)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~-~~~  417 (641)
                                                                     ...+++++.++++|++++..+ +.+.+.+ +..
T Consensus       254 -----------------------------------------------~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~  286 (502)
T TIGR01734       254 -----------------------------------------------QENYPHLTHFLFCGEELPVKTAKALLERFPKAT  286 (502)
T ss_pred             -----------------------------------------------cccCCcccEEEEcCCcCCHHHHHHHHHHCCCcE
Confidence                                                           023445688999999999887 5566666 789


Q ss_pred             eeeccccccccCeeeecCC-----CCCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhh
Q 006530          418 VQVGYGLTESSPVIAARRP-----TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ  492 (641)
Q Consensus       418 v~~~yG~tE~~~~~~~~~~-----~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~  492 (641)
                      +++.||+||++........     ......++|.+.++++++|+++ ++.+++.|+.|||+++|+.++.||+++++.+.+
T Consensus       287 ~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~~-~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~  365 (502)
T TIGR01734       287 IYNTYGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMDE-EGEPLPEGEKGEIVIVGPSVSKGYLNNPEKTAE  365 (502)
T ss_pred             EEeCccCCcceEEEEEEEccccccccCCccccccccCCCEEEEECC-CCCCCCCCCeeEEEEccccccccccCCcccchH
Confidence            9999999998754432211     1223357999999999999994 578899999999999999999999999999887


Q ss_pred             ccC---CCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecC---
Q 006530          493 ALD---EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD---  566 (641)
Q Consensus       493 ~~~---~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~---  566 (641)
                      .|.   ..+||+|||+|++++          + ++++.||.+|+|++ +|++|+|.+||+.+.++|+|.++++++..   
T Consensus       366 ~~~~~~~~~~~~TGDlg~~~~----------~-~l~i~GR~~d~i~~-~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~  433 (502)
T TIGR01734       366 AFFSHEGQPAYRTGDAGTITD----------G-QLFYQGRLDFQIKL-HGYRIELEDIEFNLRQSSYIESAVVVPKYNKD  433 (502)
T ss_pred             hheeCCCcEEEECCCEEEEEC----------C-EEEEeccccCeEEE-CcEEeCHHHHHHHHHcCCCccEEEEEEEEcCC
Confidence            762   346999999999998          5 99999999999997 99999999999999999999999999842   


Q ss_pred             --CCceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          567 --QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       567 --~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                        .+.+.++|++..+...            .......+++++++++++.|+     .|++|+.+++.|.+.+||+.
T Consensus       434 ~~~~~~~~~v~~~~~~~~------------~~~~~~~~i~~~~~~~l~~~~-----~P~~~~~v~~lP~t~~gKv~  492 (502)
T TIGR01734       434 HKVEYLIAAIVPETEDFE------------KEFQLTKAIKKELKKSLPAYM-----IPRKFIYRDQLPLTANGKID  492 (502)
T ss_pred             CCceEEEEEEEecccccc------------cchhhHHHHHHHHhhhChhhc-----CCcEEEEccccCCCCCCccc
Confidence              2357788887643100            001123678888888888887     88899999999999999973

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=2.2e-54  Score=484.39  Aligned_cols=491  Identities=24%  Similarity=0.348  Sum_probs=378.6

Q ss_pred             HHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q 006530           24 FRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLR-VIGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN  102 (641)
Q Consensus        24 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~-~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~  102 (641)
                      +...+++++..+|+++|++..+   +++||+||.++++++|..|. +.|+++||+|+++++|+++++++++||+++|+++
T Consensus        27 ~~~~l~~~~~~~~~~~a~~~~~---~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~  103 (560)
T PRK08751         27 VAEVFATSVAKFADRPAYHSFG---KTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTV  103 (560)
T ss_pred             HHHHHHHHHHhCCCCceEEECC---ceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEE
Confidence            3444556667788888887655   45999999999999999997 6899999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeC-CCCCCC---------------CCccC
Q 006530          103 VVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWG-KKSSVA---------------PDIVE  166 (641)
Q Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~---------------~~~~~  166 (641)
                      +|++|.++.+++.++++.++++.+++++ .+...+.+.....+ .+.++...- +.....               .....
T Consensus       104 v~l~p~~~~~~~~~~l~~~~~~~vi~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (560)
T PRK08751        104 VNVNPLYTPRELKHQLIDSGASVLVVID-NFGTTVQQVIADTP-VKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEYR  181 (560)
T ss_pred             eccCccCCHHHHHHHHHhcCCeEEEEcc-hhHHHHHHHhhCCC-ccEEEEechhhhcccccchhhhhhhhhhhccccccC
Confidence            9999999999999999999999999986 44444444333322 222222110 000000               00000


Q ss_pred             CCCcccHHHHHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcC----
Q 006530          167 EIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP----  242 (641)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~----  242 (641)
                      ..+...+.+.........            .......++++++++|||||||.||+|.+||+++...+......++    
T Consensus       182 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~  249 (560)
T PRK08751        182 INGAIRFREALALGRKHS------------MPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGK  249 (560)
T ss_pred             CCccccHHHHHhccCCCC------------CCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccc
Confidence            011223333333211100            1123456789999999999999999999999999887776555543    


Q ss_pred             CCCC-CEEEEECChhhHHHHHH-hHhhhhcCeeEEec----chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhcc
Q 006530          243 AENG-DKFLSMLPPWHVYERAC-GYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSS  316 (641)
Q Consensus       243 ~~~~-d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~  316 (641)
                      +.++ +.+++.+|++|.+++.. .+.++..|++.++.    ++..+++.++++++|++..+|.++..+.+.....     
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-----  324 (560)
T PRK08751        250 LEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFD-----  324 (560)
T ss_pred             cCCCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcC-----
Confidence            3333 57778899999999864 44556666666552    4678999999999999999999998776521100     


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeE
Q 006530          317 AARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAG  396 (641)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i  396 (641)
                                                                                            ...++++|.+
T Consensus       325 ----------------------------------------------------------------------~~~l~~lr~v  334 (560)
T PRK08751        325 ----------------------------------------------------------------------QIDFSSLKMT  334 (560)
T ss_pred             ----------------------------------------------------------------------Ccchhhheee
Confidence                                                                                  0123345899


Q ss_pred             EeecCCCChhH-HHHHHHcCCeeeeccccccccCeeeecCCC-CCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEE
Q 006530          397 VSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV  474 (641)
Q Consensus       397 ~~gG~~l~~~l-~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~-~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v  474 (641)
                      ++||+++++.+ ..+.+.++..+++.||+||++..+..+... ...++++|.|.++++++++| +++.+++.|+.|||++
T Consensus       335 ~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~~Gel~v  413 (560)
T PRK08751        335 LGGGMAVQRSVAERWKQVTGLTLVEAYGLTETSPAACINPLTLKEYNGSIGLPIPSTDACIKD-DAGTVLAIGEIGELCI  413 (560)
T ss_pred             eeCCCCCCHHHHHHHHHHhCCeEEEeeccccCCCceecccccccccCCCcCccCCCceEEEEC-CCCCCCCCCCceEEEE
Confidence            99999999988 445555689999999999998766554322 23457899999999999999 5678899999999999


Q ss_pred             ecCcccccccCCchhhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcC
Q 006530          475 RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRS  554 (641)
Q Consensus       475 ~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~  554 (641)
                      +|+.++.||+++++.+.+.|..+|||+|||+|++++          +|.+++.||.+|+|++ +|++|+|.+||+.+..|
T Consensus       414 ~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~----------~g~l~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~  482 (560)
T PRK08751        414 KGPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDE----------QGFVYIVDRKKDMILV-SGFNVYPNEIEDVIAMM  482 (560)
T ss_pred             ecCccchhhcCChhhhhhccccCCCccccceEEEcC----------CceEEEEeechhheeE-CCEEEcHHHHHHHHHhC
Confidence            999999999999999998887889999999999999          8999999999999997 99999999999999999


Q ss_pred             cccceEEEEecCCC----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecC
Q 006530          555 SLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDE  630 (641)
Q Consensus       555 p~V~~~~v~g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~  630 (641)
                      |+|.+++|++.+++    .+.++++.+.                 ...+.++++++++++++.|+     .|+.|.++++
T Consensus       483 ~~v~~~~v~~~~~~~~ge~~~~~v~~~~-----------------~~~~~~~l~~~~~~~l~~~~-----~P~~v~~v~~  540 (560)
T PRK08751        483 PGVLEVAAVGVPDEKSGEIVKVVIVKKD-----------------PALTAEDVKAHARANLTGYK-----QPRIIEFRKE  540 (560)
T ss_pred             cCeeeeEEEecCCCCCCceEEEEEEcCC-----------------CCCCHHHHHHHHHHhhhhcc-----CCeEEEEhhh
Confidence            99999999998764    3444444331                 24567899999999999998     7788999999


Q ss_pred             CCCCCCCccc
Q 006530          631 PFTVNFLCLA  640 (641)
Q Consensus       631 ~~~~~~~~l~  640 (641)
                      .|.+.+||+.
T Consensus       541 lP~t~~gKv~  550 (560)
T PRK08751        541 LPKTNVGKIL  550 (560)
T ss_pred             CCCCcccccc
Confidence            9999999973

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=3.5e-55  Score=572.85  Aligned_cols=478  Identities=19%  Similarity=0.216  Sum_probs=390.9

Q ss_pred             hHHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q 006530           23 GFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN  102 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~  102 (641)
                      .+....++++.+.|+++|++++++   ++||+||.++++++|+.|.+.|+++|++|+++++|++++++++|||+++|+++
T Consensus      1575 ~~~~~~~~~a~~~p~~~Av~~~~~---~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~lavlkaG~~~ 1651 (3956)
T PRK12467       1575 LVHQLIEDQAAATPEAVALVFGEQ---ELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAY 1651 (3956)
T ss_pred             cHHHHHHHHHHhCCCCeEEEeCCc---EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHHHhhccCcee
Confidence            466677778888999999988764   49999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhh
Q 006530          103 VVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRE  182 (641)
Q Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (641)
                      +|++|.++.+.+.++++++++++++++. .....+    ......+. +.+...                 .+++.....
T Consensus      1652 vpldp~~p~~rl~~il~~~~~~~~l~~~-~~~~~~----~~~~~~~~-~~~~~~-----------------~~~~~~~~~ 1708 (3956)
T PRK12467       1652 VPLDPEYPRERLAYMIEDSGIELLLTQS-HLQARL----PLPDGLRS-LVLDQE-----------------DDWLEGYSD 1708 (3956)
T ss_pred             eecCCCCCHHHHHHHHHhCCCCEEEeCh-hhhhhC----ccccCCcE-EEeccc-----------------cchhccCCC
Confidence            9999999999999999999999999985 322221    11111111 111100                 000000000


Q ss_pred             hhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHH
Q 006530          183 SRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERA  262 (641)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~  262 (641)
                      .             .+.....++++++++|||||||.||||+++|+++.+.+.+....+++.++|+++...|++|.++++
T Consensus      1709 ~-------------~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~ 1775 (3956)
T PRK12467       1709 S-------------NPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTSFAFDVSVW 1775 (3956)
T ss_pred             C-------------CCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhcCCCcccEEEEecCccHHHHHH
Confidence            0             112345688999999999999999999999999999999988889999999999999999999988


Q ss_pred             HhHhhhhcCeeEEec------chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHH
Q 006530          263 CGYFIFSRGIELMYT------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAF  336 (641)
Q Consensus       263 ~~~~~l~~G~~~v~~------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (641)
                      ..+.++..|+++++.      ++..+.+.++++++|++..+|+++..+.+....                          
T Consensus      1776 ~~~~~L~~G~~lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~-------------------------- 1829 (3956)
T PRK12467       1776 ELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDEQ-------------------------- 1829 (3956)
T ss_pred             HHHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhccc--------------------------
Confidence            889999999999985      367899999999999999999999888653100                          


Q ss_pred             HhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHc-
Q 006530          337 KRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-  414 (641)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~-  414 (641)
                                                                        ...++++|.+++||++++..+ +.+.+.+ 
T Consensus      1830 --------------------------------------------------~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~ 1859 (3956)
T PRK12467       1830 --------------------------------------------------VEHPLSLRRVVCGGEALEVEALRPWLERLP 1859 (3956)
T ss_pred             --------------------------------------------------cccCCCceEEEEccccCCHHHHHHHHHhCC
Confidence                                                              023445699999999999887 6666666 


Q ss_pred             CCeeeeccccccccCeeeecCCC-----CCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchh
Q 006530          415 GVKVQVGYGLTESSPVIAARRPT-----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSA  489 (641)
Q Consensus       415 ~~~v~~~yG~tE~~~~~~~~~~~-----~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~  489 (641)
                      +..++|.||+||++..++.....     .....++|+|+++++++|+| +.++++|.|..|||+|+|+.++.||+++|+.
T Consensus      1860 ~~~l~n~YG~TE~t~~~t~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~~GEl~i~G~~v~~GYl~~p~~ 1938 (3956)
T PRK12467       1860 DTGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILD-ASLNPVPIGVAGELYLGGVGLARGYLNRPAL 1938 (3956)
T ss_pred             CCeEEeCccCCcCEEeEEEEeccccccccCCCCCcccccCCCEEEEEC-CCCCCCCCCCceEEEeccccccccccCChhh
Confidence            57899999999998766543321     12356899999999999998 5688999999999999999999999999999


Q ss_pred             hhhccCC-------CCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEE
Q 006530          490 TKQALDE-------DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVV  562 (641)
Q Consensus       490 ~~~~~~~-------~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v  562 (641)
                      |.+.|..       .+||+|||+|++++          ||.++|+||+||+||+ +|++|+|.|||+.|.+||+|.+|+|
T Consensus      1939 t~~~f~~~p~~~~~~r~yrTGDl~~~~~----------dG~l~~~GR~D~qVki-~G~rIel~eIE~~l~~~p~V~~a~v 2007 (3956)
T PRK12467       1939 TAERFVADPFGTVGSRLYRTGDLARYRA----------DGVIEYLGRIDHQVKI-RGFRIELGEIEARLREQGGVREAVV 2007 (3956)
T ss_pred             hhhhCcCCCCCCCCccceeccceEEECC----------CCCEEEecccCceEEe-CeEEechHHHHHHHHhCCCcceEEE
Confidence            9998842       35999999999999          9999999999999998 9999999999999999999999999


Q ss_pred             EecC---CCceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCcc
Q 006530          563 IGQD---QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  639 (641)
Q Consensus       563 ~g~~---~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l  639 (641)
                      ++.+   .++++++|++..+....        .........++++++++++|+.|+     .|..|+++++.|.+.|||+
T Consensus      2008 v~~~~~~~~~lva~vv~~~~~~~~--------~~~~~~~~~~~l~~~l~~~Lp~ym-----vP~~~~~l~~lP~t~~GKi 2074 (3956)
T PRK12467       2008 IAQDGANGKQLVAYVVPTDPGLVD--------DDEAQVALRAILKNHLKASLPEYM-----VPAHLVFLARMPLTPNGKL 2074 (3956)
T ss_pred             EEecCCCCcEEEEEEEecCccccc--------ccccccccHHHHHHHHHhhCchhh-----CchhhhhhhcCCCCCCCCc
Confidence            9875   45788999876431000        000012245789999999999999     7778999999999999997


Q ss_pred             c
Q 006530          640 A  640 (641)
Q Consensus       640 ~  640 (641)
                      -
T Consensus      2075 d 2075 (3956)
T PRK12467       2075 D 2075 (3956)
T ss_pred             c
Confidence            3

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=4.1e-55  Score=581.00  Aligned_cols=468  Identities=20%  Similarity=0.247  Sum_probs=388.8

Q ss_pred             hHHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q 006530           23 GFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN  102 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~  102 (641)
                      .+....++++.+.|+++|++.+++.   +||+||.++++++|+.|.+.|+++|++|+|+++|+++++++++||+++|+++
T Consensus      2004 ~~~~~~~~~a~~~p~~~A~~~~~~~---lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~lAil~aGa~~ 2080 (5163)
T PRK12316       2004 GVHQRIAEQAARAPEAIAVVFGDQH---LSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAY 2080 (5163)
T ss_pred             CHHHHHHHHHHhCCCCeEEEcCCCe---EcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhceEE
Confidence            3556677788888999999887755   9999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhh
Q 006530          103 VVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRE  182 (641)
Q Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (641)
                      ||++|.++.+++.+++++++++++++++ .....+    ........+. +.                 ...++......
T Consensus      2081 vpld~~~p~~rl~~il~~~~~~~vl~~~-~~~~~~----~~~~~~~~~~-~~-----------------~~~~~~~~~~~ 2137 (5163)
T PRK12316       2081 VPLDPNYPAERLAYMLEDSGAALLLTQR-HLLERL----PLPAGVARLP-LD-----------------RDAEWADYPDT 2137 (5163)
T ss_pred             eecCCCCCHHHHHHHHHhcCCCEEEeCh-hhhhhc----ccccccceEe-cc-----------------chhhhhccCcc
Confidence            9999999999999999999999999985 322221    1111111111 10                 00000000000


Q ss_pred             hhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHH
Q 006530          183 SRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERA  262 (641)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~  262 (641)
                                    .+.....++++++|+|||||||.||||+++|+++.+.+.+....+++.++|+++.+.|++|..++.
T Consensus      2138 --------------~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~ 2203 (5163)
T PRK12316       2138 --------------APAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPADCELQFMSFSFDGAHE 2203 (5163)
T ss_pred             --------------CCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhcCCCCcceEEEecCchHHHHHH
Confidence                          112345789999999999999999999999999999999998899999999999999999999988


Q ss_pred             HhHhhhhcCeeEEec-----chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHH
Q 006530          263 CGYFIFSRGIELMYT-----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFK  337 (641)
Q Consensus       263 ~~~~~l~~G~~~v~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (641)
                      ..+.++..|+++++.     ++..+...++++++|++..+|+++..+.......                          
T Consensus      2204 ~~~~~L~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-------------------------- 2257 (5163)
T PRK12316       2204 QWFHPLLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERD-------------------------- 2257 (5163)
T ss_pred             HHHHHHhCCCEEEeCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhcc--------------------------
Confidence            889999999999874     3678999999999999999999998886532111                          


Q ss_pred             hHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHc-C
Q 006530          338 RIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-G  415 (641)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~-~  415 (641)
                                                                        ....++|.+++||+++++.+ ++|.+.+ +
T Consensus      2258 --------------------------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~ 2287 (5163)
T PRK12316       2258 --------------------------------------------------GRPPAVRVYCFGGEAVPAASLRLAWEALRP 2287 (5163)
T ss_pred             --------------------------------------------------cCCcceeEEEEecccCCHHHHHHHHHhCCC
Confidence                                                              11124599999999999987 6666665 6


Q ss_pred             CeeeeccccccccCeeeecCCCC-----CcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhh
Q 006530          416 VKVQVGYGLTESSPVIAARRPTC-----NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSAT  490 (641)
Q Consensus       416 ~~v~~~yG~tE~~~~~~~~~~~~-----~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~  490 (641)
                      .++++.||+||++..++......     ....++|+|+++++++|+| ++++++|.|++|||+|+|+.+++||+++|+.|
T Consensus      2288 ~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~vp~g~~GEl~i~G~~v~~GY~~~p~~T 2366 (5163)
T PRK12316       2288 VYLFNGYGPTEAVVTPLLWKCRPQDPCGAAYVPIGRALGNRRAYILD-ADLNLLAPGMAGELYLGGEGLARGYLNRPGLT 2366 (5163)
T ss_pred             cEEEECccchhheeeeeeeecccccccCCCcCCcccccCCCEEEEEC-CCCCCCCCCCeeEEEecchhhcccccCChhhh
Confidence            78999999999987655433221     1225799999999999999 45789999999999999999999999999999


Q ss_pred             hhccCC-------CCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEE
Q 006530          491 KQALDE-------DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVI  563 (641)
Q Consensus       491 ~~~~~~-------~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~  563 (641)
                      .+.|..       ++||+|||+|++++          ||.|+++||+||+||+ +|++|+|.|||+.|.+||+|.+++|+
T Consensus      2367 ~~~f~~~~~~~~~~~~yrTGDl~~~~~----------dG~l~~~GR~d~~iki-~G~rie~~eIE~~l~~~~~v~~a~v~ 2435 (5163)
T PRK12316       2367 AERFVPDPFSASGERLYRTGDLARYRA----------DGVVEYLGRIDHQVKI-RGFRIELGEIEARLQAHPAVREAVVV 2435 (5163)
T ss_pred             hhhccCCCCCCCCCeeEecccEEEEcC----------CCcEEEecCCCCeEEE-cCccCChHHHHHHHhhCcccceEEEE
Confidence            999843       35999999999999          9999999999999998 99999999999999999999999999


Q ss_pred             ecC---CCceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCcc
Q 006530          564 GQD---QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  639 (641)
Q Consensus       564 g~~---~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l  639 (641)
                      +.+   .+.++|+|++..+                ...+.++++++++++|+.|+     .|..|+.+++.|.+.|||+
T Consensus      2436 ~~~~~~~~~l~a~v~~~~~----------------~~~~~~~l~~~l~~~Lp~~~-----vP~~~~~l~~lP~t~~GKi 2493 (5163)
T PRK12316       2436 AQDGASGKQLVAYVVPDDA----------------AEDLLAELRAWLAARLPAYM-----VPAHWVVLERLPLNPNGKL 2493 (5163)
T ss_pred             EEecCCCeEEEEEEEecCC----------------CccCHHHHHHHHHhhCchhc-----CcceEeeecccCCCCCCcc
Confidence            864   3478899987643                24567899999999999999     7778999999999999997

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.6e-54  Score=483.92  Aligned_cols=491  Identities=25%  Similarity=0.368  Sum_probs=374.8

Q ss_pred             HHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEE
Q 006530           24 FRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINV  103 (641)
Q Consensus        24 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v  103 (641)
                      +..++++.+..+|++.|+...+   +.+||+||.+++.++|+.|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus        26 ~~~~~~~~a~~~p~~~a~~~~~---~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v  102 (563)
T PRK06710         26 LHKYVEQMASRYPEKKALHFLG---KDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVV  102 (563)
T ss_pred             HHHHHHHHHHHCCCceEEEecC---eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEEe
Confidence            4455566667788888887765   4599999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeC-CCCCCCCC----------------ccC
Q 006530          104 VRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWG-KKSSVAPD----------------IVE  166 (641)
Q Consensus       104 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~----------------~~~  166 (641)
                      |++|..+.+++.++++.++++.+++++ .....+...... .....++.... +.......                ...
T Consensus       103 pi~p~~~~~~l~~~l~~~~~~~ii~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (563)
T PRK06710        103 QTNPLYTERELEYQLHDSGAKVILCLD-LVFPRVTNVQSA-TKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSE  180 (563)
T ss_pred             ccCcccCHHHHHHHHhccCCeEEEEec-cchhhhhccchh-hccceeEEeccccccccccccccchhhcccccccccccc
Confidence            999999999999999999999999986 333333222111 11222222110 00000000                000


Q ss_pred             CCCcccHHHHHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhh-hcCCC-
Q 006530          167 EIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD-IVPAE-  244 (641)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~-~~~~~-  244 (641)
                      ......|+.+.....   .          .........+++++++|||||||.||+|.++|+++......... .+... 
T Consensus       181 ~~~~~~~~~~~~~~~---~----------~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~  247 (563)
T PRK06710        181 SETIHLWNSVEKEVN---T----------GVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKE  247 (563)
T ss_pred             cchhhhhhhhhhccc---c----------ccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCC
Confidence            000001111111000   0          00111223578999999999999999999999998765433322 23433 


Q ss_pred             CCCEEEEECChhhHHHHHH-hHhhhhcCeeEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHH
Q 006530          245 NGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARR  320 (641)
Q Consensus       245 ~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~  320 (641)
                      .++++++.+|++|.+++.. .+.++..|+++++.   ++..+++.++++++|++.++|+++..+........        
T Consensus       248 ~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--------  319 (563)
T PRK06710        248 GEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKE--------  319 (563)
T ss_pred             CCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCcccc--------
Confidence            3468899999999998865 44568889998875   56789999999999999999999988754211000        


Q ss_pred             HHHHHHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeec
Q 006530          321 VVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGG  400 (641)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG  400 (641)
                                                                                         ..+.++|.+++||
T Consensus       320 -------------------------------------------------------------------~~~~~lr~v~~gg  332 (563)
T PRK06710        320 -------------------------------------------------------------------YDISSIRACISGS  332 (563)
T ss_pred             -------------------------------------------------------------------CChhhhhheeeCC
Confidence                                                                               1123348899999


Q ss_pred             CCCChhHHHH-HHHcCCeeeeccccccccCeeeecCC-CCCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCc
Q 006530          401 GSLPMHIDLF-YEAIGVKVQVGYGLTESSPVIAARRP-TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQ  478 (641)
Q Consensus       401 ~~l~~~l~~~-~~~~~~~v~~~yG~tE~~~~~~~~~~-~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~  478 (641)
                      ++++..+.+. .+.++..+++.||+||++........ ....++++|.|.+++.+++++++++.+++.|+.|||+++|+.
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~  412 (563)
T PRK06710        333 APLPVEVQEKFETVTGGKLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQ  412 (563)
T ss_pred             CcCCHHHHHHHHHhhCCCEecccccccCccccccCcccccccCCccCCCCCCCeEEEEECCCCccCCCCCceEEEEecCc
Confidence            9999988554 44568999999999999875543322 223457899999999999999888999999999999999999


Q ss_pred             ccccccCCchhhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccc
Q 006530          479 VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIR  558 (641)
Q Consensus       479 ~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~  558 (641)
                      ++.||+++++.+...| .+|||+|||++++++          +|.++++||.+|+|++ +|.+|+|.+||+.|.+||+|.
T Consensus       413 ~~~gY~~~~~~~~~~~-~~g~~~TGD~~~~~~----------~g~~~~~GR~dd~i~~-~G~~v~p~eiE~~l~~~~~v~  480 (563)
T PRK06710        413 IMKGYWNKPEETAAVL-QDGWLHTGDVGYMDE----------DGFFYVKDRKKDMIVA-SGFNVYPREVEEVLYEHEKVQ  480 (563)
T ss_pred             cchhhhCChHHHhhhc-ccCcccccceEEEcC----------CCcEEEeeccccEEEE-CCEEECHHHHHHHHHhCccee
Confidence            9999999999998888 589999999999999          8999999999999997 999999999999999999999


Q ss_pred             eEEEEecCCC----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCC
Q 006530          559 QIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTV  634 (641)
Q Consensus       559 ~~~v~g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~  634 (641)
                      +++|++.+++    .+.++|+..++                ...+.++++++++++++.|+     .|+.|.++++.|.+
T Consensus       481 ~~~v~~~~~~~~g~~~~~~v~~~~~----------------~~~~~~~l~~~~~~~l~~~~-----~P~~~~~v~~iP~t  539 (563)
T PRK06710        481 EVVTIGVPDPYRGETVKAFVVLKEG----------------TECSEEELNQFARKYLAAYK-----VPKVYEFRDELPKT  539 (563)
T ss_pred             eEEEEccccCCcCceeEEEEEECCC----------------CCCCHHHHHHHHHHhccccc-----CCcEEEEcccCCCC
Confidence            9999997653    46677776543                23567889999999999998     67789999999999


Q ss_pred             CCCccc
Q 006530          635 NFLCLA  640 (641)
Q Consensus       635 ~~~~l~  640 (641)
                      .+||+.
T Consensus       540 ~~GKi~  545 (563)
T PRK06710        540 TVGKIL  545 (563)
T ss_pred             ccchhh
Confidence            999973

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.8e-54  Score=474.47  Aligned_cols=482  Identities=18%  Similarity=0.221  Sum_probs=378.1

Q ss_pred             HhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEEecCC
Q 006530           28 TRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGS  107 (641)
Q Consensus        28 ~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v~l~~  107 (641)
                      .+.+++++|+++++...+++ +.+||.||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|++++++++
T Consensus         3 ~~~~a~~~p~~~a~~~~~~~-~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~   81 (511)
T PRK13391          3 PGIHAQTTPDKPAVIMASTG-EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNS   81 (511)
T ss_pred             hhhhHhhCCCceEEEecCCC-CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEecccc
Confidence            45667778999988764322 56999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhhhccc
Q 006530          108 RSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAF  187 (641)
Q Consensus       108 ~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (641)
                      .++.+.+.++++.++++.+++++ .....+.+...........+...++...        .....+.+.....   +   
T Consensus        82 ~~~~~~l~~~l~~~~~~~li~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~---~---  146 (511)
T PRK13391         82 HLTPAEAAYIVDDSGARALITSA-AKLDVARALLKQCPGVRHRLVLDGDGEL--------EGFVGYAEAVAGL---P---  146 (511)
T ss_pred             ccCHHHHHHHHhccCCcEEEEch-hhHHHHHHHHhcCCCceEEEEecCCCCC--------cccccHHHHhcCC---C---
Confidence            99999999999999999999986 4444444444444444444444322111        1122333332110   0   


Q ss_pred             CCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHh--hHHHHHH---HHHHHhhhcCCCCCCEEEEECChhhHHHHH
Q 006530          188 SDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVML--THKNLLH---QIRSLYDIVPAENGDKFLSMLPPWHVYERA  262 (641)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~--sh~~l~~---~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~  262 (641)
                                .....+.++.++++|||||||.||+|.+  +|.++..   ........+++.+++++++.+|++|..++.
T Consensus       147 ----------~~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~  216 (511)
T PRK13391        147 ----------ATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQR  216 (511)
T ss_pred             ----------CCCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHH
Confidence                      0111234567899999999999999994  5665532   333445566788899999999999999988


Q ss_pred             HhHhhhhcCeeEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhH
Q 006530          263 CGYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRI  339 (641)
Q Consensus       263 ~~~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (641)
                      ..+.++..|+++++.   ++..+++.++++++|++.++|+++..+.+......                           
T Consensus       217 ~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~---------------------------  269 (511)
T PRK13391        217 AVMLVIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVR---------------------------  269 (511)
T ss_pred             HHHHHHHcCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhc---------------------------
Confidence            777888999999884   67899999999999999999999987754211100                           


Q ss_pred             hcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhHHH-HHHHcCCee
Q 006530          340 YEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGVKV  418 (641)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l~~-~~~~~~~~v  418 (641)
                                                                    -...++++|.+++||+++++.+.+ +.+.+|..+
T Consensus       270 ----------------------------------------------~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v  303 (511)
T PRK13391        270 ----------------------------------------------DKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPII  303 (511)
T ss_pred             ----------------------------------------------ccCCccceeEEEEccCCCCHHHHHHHHHHcCCce
Confidence                                                          001234559999999999998844 455568899


Q ss_pred             eeccccccccCeeeecCCC-CCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccCCC
Q 006530          419 QVGYGLTESSPVIAARRPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED  497 (641)
Q Consensus       419 ~~~yG~tE~~~~~~~~~~~-~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~  497 (641)
                      ++.||+||++.+....... ...++++|.|.++ .++|+| +++.+++.|+.|||+++|+ ++.||+++++.+...|..+
T Consensus       304 ~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~g-~~~i~d-~~~~~~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~  380 (511)
T PRK13391        304 HEYYAATEGLGFTACDSEEWLAHPGTVGRAMFG-DLHILD-DDGAELPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPD  380 (511)
T ss_pred             eeeeccccccceEEecCccccccCCCcCCcccc-eEEEEC-CCCCCCCCCCceEEEEecC-cceEEcCChhHhHHhhccC
Confidence            9999999998766543332 2456789999999 689988 5688899999999999999 8899999999998888654


Q ss_pred             -CccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC----ceEE
Q 006530          498 -GWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGA  572 (641)
Q Consensus       498 -g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----~~~a  572 (641)
                       +||+|||+|++++          +|.+++.||.+|+++. +|++++|.+||+++.+||.|.+++|++.+++    .+.+
T Consensus       381 ~~w~~TGD~g~~~~----------~g~l~~~gR~~~~i~~-~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~  449 (511)
T PRK13391        381 GTWSTVGDIGYVDE----------DGYLYLTDRAAFMIIS-GGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKA  449 (511)
T ss_pred             CCEEecCCEEEECC----------CccEEEeccCCCEEEe-CCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEE
Confidence             9999999999999          8999999999999997 9999999999999999999999999997654    3556


Q ss_pred             EEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          573 IIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       573 ~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                      ++++..+.             .......++++++++++++.|+     .|+.|..+++.|.+.+||+.
T Consensus       450 ~~~~~~~~-------------~~~~~~~~~l~~~~~~~l~~~~-----~P~~i~~~~~~P~t~~gKv~  499 (511)
T PRK13391        450 VVQPVDGV-------------DPGPALAAELIAFCRQRLSRQK-----CPRSIDFEDELPRLPTGKLY  499 (511)
T ss_pred             EEEECCCC-------------CcccchHHHHHHHHHhhcccCc-----CCcEEEEeecCCCCCcccee
Confidence            66665321             0012235789999999999988     77889999999999999973

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=9.7e-54  Score=477.61  Aligned_cols=489  Identities=21%  Similarity=0.273  Sum_probs=373.1

Q ss_pred             HHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEE
Q 006530           24 FRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINV  103 (641)
Q Consensus        24 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v  103 (641)
                      ...++++.++..|+++|+...+   +.+||+||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus        20 ~~~~~~~~~~~~~~~~a~~~~~---~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~v   96 (545)
T PRK08162         20 PLSFLERAAEVYPDRPAVIHGD---RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLN   96 (545)
T ss_pred             HHHHHHHHHHHCCCCeEEEECC---eEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEEe
Confidence            4455666777889999987765   4599999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhh
Q 006530          104 VRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRES  183 (641)
Q Consensus       104 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (641)
                      |++++.+.+++.++++.++++.++++. .....+.+.....+..+. +.+..+......  ....+..++++++......
T Consensus        97 pl~~~~~~~~~~~~l~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  172 (545)
T PRK08162         97 TLNTRLDAASIAFMLRHGEAKVLIVDT-EFAEVAREALALLPGPKP-LVIDVDDPEYPG--GRFIGALDYEAFLASGDPD  172 (545)
T ss_pred             ccccccChHHHHHHHHhCCCeEEEEcc-chhhHHHHHHhhCCCCce-EEEecCcccccc--CCCcccccHHHHhccCCcc
Confidence            999999999999999999999999986 555555444333332222 222211111000  0112344566665432111


Q ss_pred             hcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHHH
Q 006530          184 RKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC  263 (641)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~  263 (641)
                      .            ......+..++++++|||||||.||||+++|+++...+......+.+..++++++.+|++|..++..
T Consensus       173 ~------------~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~  240 (545)
T PRK08162        173 F------------AWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCF  240 (545)
T ss_pred             c------------cccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHH
Confidence            0            0111234568999999999999999999999988766665555667888899999999999998866


Q ss_pred             hHhh-hhcCeeEEe--cchHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhHh
Q 006530          264 GYFI-FSRGIELMY--TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIY  340 (641)
Q Consensus       264 ~~~~-l~~G~~~v~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (641)
                      .+.. +..|..++.  .++..+++.++++++|++.++|+++..+.+......                            
T Consensus       241 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------------  292 (545)
T PRK08162        241 PWTVAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWR----------------------------  292 (545)
T ss_pred             HHHHHHHccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccc----------------------------
Confidence            5444 444444444  368899999999999999999999998875311100                            


Q ss_pred             cccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhHHHHHHHcCCeeee
Q 006530          341 EGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQV  420 (641)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l~~~~~~~~~~v~~  420 (641)
                                                                     ..+...+.++++|+.++..+.+.++.++.++++
T Consensus       293 -----------------------------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  325 (545)
T PRK08162        293 -----------------------------------------------AGIDHPVHAMVAGAAPPAAVIAKMEEIGFDLTH  325 (545)
T ss_pred             -----------------------------------------------cCCccceEEEECCCCCCHHHHHHHHHhCCceee
Confidence                                                           111223566889999988886666667999999


Q ss_pred             ccccccccCeeeecCCC-----------CCcccccccCcC-CcEEEEeeCCCCccCCC-C-CCceEEEecCcccccccCC
Q 006530          421 GYGLTESSPVIAARRPT-----------CNVLGSVGHPIN-HTEIKIVDAETNEVLPA-G-SKGIVKVRGSQVMQGYFKN  486 (641)
Q Consensus       421 ~yG~tE~~~~~~~~~~~-----------~~~~~~~G~~~~-~~~v~i~d~~~~~~~~~-g-~~Gel~v~g~~~~~gY~~~  486 (641)
                      .||+||+++.+..+...           ....++.|.+.+ +..++|+|++++.+++. | +.|||+++|+.++.||+++
T Consensus       326 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~  405 (545)
T PRK08162        326 VYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKN  405 (545)
T ss_pred             cccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCC
Confidence            99999986544433211           011245566655 33578888777888876 3 4699999999999999999


Q ss_pred             chhhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecC
Q 006530          487 PSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD  566 (641)
Q Consensus       487 ~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~  566 (641)
                      ++.+...| .+|||+|||+|++++          +|.++++||.+|+|+. +|++|+|.+||+.|.+||+|.+++|++.+
T Consensus       406 ~~~~~~~~-~~g~~~TGDl~~~d~----------dg~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~  473 (545)
T PRK08162        406 PKATEEAF-AGGWFHTGDLAVLHP----------DGYIKIKDRSKDIIIS-GGENISSIEVEDVLYRHPAVLVAAVVAKP  473 (545)
T ss_pred             hhhhHHHh-hCCCcccCceEEEcC----------CccEEEEecccceEEe-CCEEECHHHHHHHHHhCCcccEEEEEeee
Confidence            99999988 589999999999999          9999999999999996 99999999999999999999999999976


Q ss_pred             CC----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          567 QR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       567 ~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                      ++    .+.++|++..+                ...+.++++++++++|+.|+     +|+.+.+ .+.|.+.+||+.
T Consensus       474 ~~~~~~~~~~~v~~~~~----------------~~~~~~~l~~~~~~~l~~~~-----~P~~~~~-~~iP~t~~gK~~  529 (545)
T PRK08162        474 DPKWGEVPCAFVELKDG----------------ASATEEEIIAHCREHLAGFK-----VPKAVVF-GELPKTSTGKIQ  529 (545)
T ss_pred             ccccCceEEEEEEeCCC----------------CCCCHHHHHHHHHHhccccc-----CCcEEEe-cccCCCCCcCCc
Confidence            53    46677776643                23467899999999999998     5566655 578899999974

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=3.3e-54  Score=468.31  Aligned_cols=407  Identities=18%  Similarity=0.212  Sum_probs=334.5

Q ss_pred             EeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCChhHHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCceEEEec
Q 006530           51 FCESKLEQEILDFAEGLRVIGV-KPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVALAVE  129 (641)
Q Consensus        51 ~Ty~eL~~~~~~lA~~L~~~Gl-~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~  129 (641)
                      +.|+||.++++++|..|.+.|+ ++|++|+++++|+++++++++||+++|++++|+||.++.+++.++++.+++++++++
T Consensus        20 ~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~~   99 (452)
T PRK07445         20 YNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWGL   99 (452)
T ss_pred             cChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEec
Confidence            7899999999999999999988 579999999999999999999999999999999999999999999999999999987


Q ss_pred             ChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhhhcccCCCchhhcccccCCCCCCCEEE
Q 006530          130 NPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIAT  209 (641)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  209 (641)
                      +. ....          .     . .   .           ..                        .......++++++
T Consensus       100 ~~-~~~~----------~-----~-~---~-----------~~------------------------~~~~~~~~~~~~~  124 (452)
T PRK07445        100 DQ-LKLS----------H-----P-P---P-----------LP------------------------SQGILPNLETGWI  124 (452)
T ss_pred             Cc-cccc----------c-----C-C---C-----------CC------------------------ccccCCCCCCcEE
Confidence            52 1100          0     0 0   0           00                        0001124689999


Q ss_pred             EEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHHHhHhhhhcCeeEEecch---HHHHHHH
Q 006530          210 YVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAV---RNLKDDL  286 (641)
Q Consensus       210 i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~~---~~~~~~i  286 (641)
                      ++|||||||.||||.+||+++...+......+++.+ ++.++++|++|.+|+...+.++..|+++++.+.   .......
T Consensus       125 i~~TSGTTG~PKgV~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~  203 (452)
T PRK07445        125 MIPTGGSSGQIRFAIHTWETLTASVQGFQRYFQLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELP  203 (452)
T ss_pred             EEeCCCCCCCCcEEEechHHHHHHHHHHHHHhcCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhh
Confidence            999999999999999999999988887777776655 457889999999999888888999999998652   2222334


Q ss_pred             hhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHH
Q 006530          287 QRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARI  366 (641)
Q Consensus       287 ~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (641)
                      .+++++++..+|+++..+.+..                                                          
T Consensus       204 ~~~~~t~~~~vP~~l~~l~~~~----------------------------------------------------------  225 (452)
T PRK07445        204 PNPSDFFLSLVPTQLQRLLQLR----------------------------------------------------------  225 (452)
T ss_pred             hhcCceEEEehHHHHHHHHhhC----------------------------------------------------------
Confidence            5688899999999998876410                                                          


Q ss_pred             HHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhHHHHHHHcCCeeeeccccccccCeeeecCCCC--Cccccc
Q 006530          367 ICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTC--NVLGSV  444 (641)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~--~~~~~~  444 (641)
                                          ...++++|.+++||+++++.+.+....++.++++.||+||++..+....+..  ..++++
T Consensus       226 --------------------~~~l~~l~~i~~gG~~l~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~  285 (452)
T PRK07445        226 --------------------PQWLAQFRTILLGGAPAWPSLLEQARQLQLRLAPTYGMTETASQIATLKPDDFLAGNNSS  285 (452)
T ss_pred             --------------------hhhhhcceEEEECCccCCHHHHHHHHhcCCeEecCcchhhhcccccccCchhhccCCCcC
Confidence                                0123445999999999999886555567899999999999876544333222  245689


Q ss_pred             ccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccCCCCccccCceeEEcCCCCCCCccccCceE
Q 006530          445 GHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVL  524 (641)
Q Consensus       445 G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l  524 (641)
                      |.|+++++++|+         .|+.|||+|+|+.++.||++++.      ..+|||+|||+|++++          ||++
T Consensus       286 G~~~p~~~v~i~---------~g~~Gel~v~g~~~~~gY~~~~~------~~~g~~~TGDl~~~d~----------dG~l  340 (452)
T PRK07445        286 GQVLPHAQITIP---------ANQTGNITIQAQSLALGYYPQIL------DSQGIFETDDLGYLDA----------QGYL  340 (452)
T ss_pred             CccCCCCeEEEc---------CCCcceEEEeCCccchhhcCCcc------CCCCEEECCCEEEEcC----------CCCE
Confidence            999999999997         35679999999999999998643      2479999999999999          9999


Q ss_pred             EEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC----ceEEEEecCHHHHHHHHHHcCCCCCChhhcCh
Q 006530          525 VLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSK  600 (641)
Q Consensus       525 ~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~  600 (641)
                      ++.||+||+|+. +|++|+|.+||+.|.+||+|.+|+|+|.+++    .+.++++++.+                 ..+.
T Consensus       341 ~~~GR~dd~I~~-~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~~-----------------~~~~  402 (452)
T PRK07445        341 HILGRNSQKIIT-GGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDP-----------------SISL  402 (452)
T ss_pred             EEEeecCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeCCC-----------------CCCH
Confidence            999999999997 9999999999999999999999999998765    46677776532                 2457


Q ss_pred             HHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCcc
Q 006530          601 EKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  639 (641)
Q Consensus       601 ~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l  639 (641)
                      ++++++++++|+.|+     .|+.|+++++.|.+.+||+
T Consensus       403 ~~l~~~~~~~L~~~~-----~P~~i~~v~~lP~t~~GKi  436 (452)
T PRK07445        403 EELKTAIKDQLSPFK-----QPKHWIPVPQLPRNPQGKI  436 (452)
T ss_pred             HHHHHHHHHhCCccc-----CCeEEEEecCCCCCCCccc
Confidence            899999999999998     7788999999999999997

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=3.4e-54  Score=460.05  Aligned_cols=503  Identities=17%  Similarity=0.193  Sum_probs=400.9

Q ss_pred             chhhhchhhhhhhhHHHHHhhhhhhh-----hhhhhhccc---CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Q 006530           10 SSLILSSLDYHRHGFRVFTRNCVDAV-----ATRIRISRR---NHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLF   81 (641)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~a~~~~---~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~   81 (641)
                      .+......+|+...+.+.++++.+++     .++++++.+   .+....+||.|+.+++.++|..|...|+++||+|+++
T Consensus        48 ~~~~~~~~~w~~g~~ln~~~n~~~~~~~~~~~~~~a~~~~~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~  127 (626)
T KOG1175|consen   48 ENKGNPFTKWFPGAFLNACYNCLDRHIKEKGGDKVAIIFEGNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIY  127 (626)
T ss_pred             cccCCCCccccccchhhhhHhhhhhhhhhcCCCCcEEEEEecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence            34445667889999999999988887     455565543   2233449999999999999999998899999999999


Q ss_pred             cCCChhHHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCceEEEecCh--------hhHHHHHHhhcccccc----cE
Q 006530           82 SDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVALAVENP--------EFFNRIAETLCSKAAM----RF  149 (641)
Q Consensus        82 ~~n~~e~i~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~--------~~~~~~~~~~~~~~~~----~~  149 (641)
                      +|+.++++++++||+++|++.+++-..++++++...+..++++++++.+.        .....+.+........    ..
T Consensus       128 mPm~~e~~ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~  207 (626)
T KOG1175|consen  128 MPMIPEAVIAMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWL  207 (626)
T ss_pred             ccCChHHHHHHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccce
Confidence            99999999999999999999999999999999999999999999999762        1112222222222211    11


Q ss_pred             EEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHH-
Q 006530          150 IILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHK-  228 (641)
Q Consensus       150 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~-  228 (641)
                      .+.+.+.           .....|++++......             .++...+.+|+.+|+|||||||.||++.+++. 
T Consensus       208 ~~~~~~~-----------~~d~~~~~~~~~a~~~-------------~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g  263 (626)
T KOG1175|consen  208 DLIVSRR-----------NRDLFWSLELKKASPE-------------HPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGG  263 (626)
T ss_pred             eeEEecc-----------cccccHHHHhhhcCCC-------------CCceecCccCceEEEecCCCCCCCCceeeccCc
Confidence            1111111           1123455544332221             33567889999999999999999999999886 


Q ss_pred             HHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHHH-hHhhhhcCeeEEec-----chHHHHHHHhhhCCeEEEeCcHHHH
Q 006530          229 NLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-----AVRNLKDDLQRYQPHYMISVPLVYE  302 (641)
Q Consensus       229 ~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~-----~~~~~~~~i~~~~~t~~~~~P~~~~  302 (641)
                      .++..+...+..+.++++|++.++....|+.+.++ .+++|..|++++++     ++..+++.+.++++|+++..|+.+.
T Consensus       264 ~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r  343 (626)
T KOG1175|consen  264 YLLGAALTSRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYR  343 (626)
T ss_pred             chHHHhhhcceeccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHH
Confidence            45667777788889999999999999999999987 55689999999984     4778999999999999999999999


Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 006530          303 TLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLV  382 (641)
Q Consensus       303 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (641)
                      .+........                                                                      
T Consensus       344 ~l~~~~~~~~----------------------------------------------------------------------  353 (626)
T KOG1175|consen  344 LLRRLGQEDV----------------------------------------------------------------------  353 (626)
T ss_pred             HHHHhccccc----------------------------------------------------------------------
Confidence            8765432211                                                                      


Q ss_pred             HHHHHhhcCCceeEEeecCCCChhHHH-HHHHcCC-eeeeccccccccCeeeecCCCC--CcccccccCcCCcEEEEeeC
Q 006530          383 YKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGV-KVQVGYGLTESSPVIAARRPTC--NVLGSVGHPINHTEIKIVDA  458 (641)
Q Consensus       383 ~~~~~~~l~~~r~i~~gG~~l~~~l~~-~~~~~~~-~v~~~yG~tE~~~~~~~~~~~~--~~~~~~G~~~~~~~v~i~d~  458 (641)
                         ...+++++|.+.++|+++.++..+ +.+.++. +|.+.||.||+|..+..+....  ..+++.+.|.+|+.+.|.|+
T Consensus       354 ---~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~de  430 (626)
T KOG1175|consen  354 ---TSYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILDE  430 (626)
T ss_pred             ---cccccceEEEEeecCccCCcchHHHHHHhcCccchhhceeeeccCceeeeccCCCCCcCccccCCCCCCcceEEECC
Confidence               113445679999999999988744 5555676 6999999999999999888776  88999999999999999995


Q ss_pred             CCCccCCCC-CCceEEEecC---cccccccCCchhhhhccCC--CCccccCceeEEcCCCCCCCccccCceEEEeccccc
Q 006530          459 ETNEVLPAG-SKGIVKVRGS---QVMQGYFKNPSATKQALDE--DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKD  532 (641)
Q Consensus       459 ~~~~~~~~g-~~Gel~v~g~---~~~~gY~~~~~~~~~~~~~--~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d  532 (641)
                       ++.+++.+ +.|+|+++.+   .++++|++|++..+.++..  .|+|.|||.+++|.          ||+++++||.||
T Consensus       431 -~g~~~~~~~~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~y~tGD~~~rd~----------dGY~~i~GR~DD  499 (626)
T KOG1175|consen  431 -NGNELPPSTGNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGYYFTGDGGRRDE----------DGYYWILGRVDD  499 (626)
T ss_pred             -CCCCcCCCCceeEEEEeCCCCccccccccCCHHHhhhhhcccCCceEEecCceEEcC----------CceEEEEecccc
Confidence             67777766 8999999974   7789999999977777544  89999999999999          999999999999


Q ss_pred             eEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHH
Q 006530          533 TIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLY  608 (641)
Q Consensus       533 ~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  608 (641)
                      +|++ +|+++.+.|||+++.+||.|.|++|||.+++    .+.|||+++++.             ...+.-.++|++++|
T Consensus       500 viNv-sGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~-------------~~~~~L~kel~~~VR  565 (626)
T KOG1175|consen  500 VINV-SGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSGS-------------HDPEQLTKELVKHVR  565 (626)
T ss_pred             cccc-cceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCCC-------------CChHHHHHHHHHHHH
Confidence            9997 9999999999999999999999999998765    577999998751             011223455555555


Q ss_pred             HHHHhHhccCCCccccEEEecCCCCCCCCcc
Q 006530          609 GELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  639 (641)
Q Consensus       609 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l  639 (641)
                      ..|.++.     .|++|.+++++|.|-|||+
T Consensus       566 ~~igp~a-----~P~~I~~v~~LPkTrSGKi  591 (626)
T KOG1175|consen  566 SVIGPYA-----VPRLIVFVPGLPKTRSGKI  591 (626)
T ss_pred             hhcCccc-----ccceeEecCCCCccccchh
Confidence            5555555     8899999999999999997

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.4e-54  Score=481.98  Aligned_cols=473  Identities=22%  Similarity=0.289  Sum_probs=357.4

Q ss_pred             HHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEEe
Q 006530           25 RVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVV  104 (641)
Q Consensus        25 ~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v~  104 (641)
                      ...++..+..+|+.+++..++..++.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|+++++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~  103 (579)
T PRK09192         24 VEALDYAALGEAGMNFYDRRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVP  103 (579)
T ss_pred             HHHHHHhhccCCceEEEecCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHHHHHHcCCeeEe
Confidence            33334444445655554433444688999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCC-------HHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHH
Q 006530          105 RGSRSS-------SEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEII  177 (641)
Q Consensus       105 l~~~~~-------~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (641)
                      +++..+       .+++.++++.++++++++++ .....+.+...... ..                    ...++.++.
T Consensus       104 i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~-~~~~~~~~~~~~~~-~~--------------------~~~~~~~~~  161 (579)
T PRK09192        104 LPLPMGFGGRESYIAQLRGMLASAQPAAIITPD-ELLPWVNEATHGNP-LL--------------------HVLSHAWFK  161 (579)
T ss_pred             ccCCcccccchHHHHHHHHHHHhcCCCEEEeCh-HHHHHHHHhhcccc-cc--------------------ceeehhhhc
Confidence            987543       68999999999999999985 44444443321111 00                    012233222


Q ss_pred             HhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhh-hcCCCCCCEEEEECChh
Q 006530          178 DLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD-IVPAENGDKFLSMLPPW  256 (641)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~-~~~~~~~d~~l~~~pl~  256 (641)
                      ......             .......++++++++|||||||.||||.++|++++..+..... .+++.++|+++.++|++
T Consensus       162 ~~~~~~-------------~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~  228 (579)
T PRK09192        162 ALPEAD-------------VALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFY  228 (579)
T ss_pred             ccCCCc-------------cccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCCC
Confidence            211100             1112346789999999999999999999999999998887777 78899999999999999


Q ss_pred             hHHHHHHh-HhhhhcCeeEEec-------chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q 006530          257 HVYERACG-YFIFSRGIELMYT-------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIR  328 (641)
Q Consensus       257 ~~~g~~~~-~~~l~~G~~~v~~-------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  328 (641)
                      |.+++... +.++..|+++++.       ++..+++.+.++++++++..|..+..+........                
T Consensus       229 h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~----------------  292 (579)
T PRK09192        229 HDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKD----------------  292 (579)
T ss_pred             CcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhcccc----------------
Confidence            99998764 4458888888664       36678899999999977765544443322110000                


Q ss_pred             HhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-
Q 006530          329 ISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-  407 (641)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-  407 (641)
                                                                              ....+++++|.+++||+++++.+ 
T Consensus       293 --------------------------------------------------------~~~~~l~~lr~~~~gG~~l~~~~~  316 (579)
T PRK09192        293 --------------------------------------------------------LAELDLSCWRVAGIGADMIRPDVL  316 (579)
T ss_pred             --------------------------------------------------------ccccchhhhheeEecCccCCHHHH
Confidence                                                                    00012344589999999999987 


Q ss_pred             HHHHHHc---C---CeeeeccccccccCeeeecCCCC----------------------------CcccccccCcCCcEE
Q 006530          408 DLFYEAI---G---VKVQVGYGLTESSPVIAARRPTC----------------------------NVLGSVGHPINHTEI  453 (641)
Q Consensus       408 ~~~~~~~---~---~~v~~~yG~tE~~~~~~~~~~~~----------------------------~~~~~~G~~~~~~~v  453 (641)
                      ..+.+.+   |   ..+++.||+||++..++......                            ...+++|.|+|++++
T Consensus       317 ~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v  396 (579)
T PRK09192        317 HQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEI  396 (579)
T ss_pred             HHHHHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEE
Confidence            4444444   2   35899999999976655433211                            012478999999999


Q ss_pred             EEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccce
Q 006530          454 KIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDT  533 (641)
Q Consensus       454 ~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~  533 (641)
                      +|+| +++..++.|+.|||+++|+.++.||+++ ..+.+.+..++||+|||+|++ +          +|+++++||++|+
T Consensus       397 ~i~d-~~~~~~~~g~~Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~----------~G~l~~~GR~dd~  463 (579)
T PRK09192        397 EIRN-EAGMPLPERVVGHICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-L----------DGYLYITGRAKDL  463 (579)
T ss_pred             EEEC-CCCCCCCCCCEEEEEecCCchhhhhcCC-ccccccccCCceeeccceeeE-E----------CCEEEEEeccccE
Confidence            9999 4578899999999999999999999999 667777778999999999998 7          7999999999999


Q ss_pred             EEeCCceeeccHHhHHHHhcCcccc--eEEEEecCCC---ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHH
Q 006530          534 IVLSTGENVEPLELEEAALRSSLIR--QIVVIGQDQR---RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLY  608 (641)
Q Consensus       534 i~~~~G~~v~p~~iE~~l~~~p~V~--~~~v~g~~~~---~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  608 (641)
                      |++ +|++|+|.|||+.|.+||+|.  +|+|++.+++   .+.++|++..+                ...+.++++++++
T Consensus       464 i~~-~G~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~~~~~~~~v~~~~~----------------~~~~~~~l~~~~~  526 (579)
T PRK09192        464 III-NGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQENGEKIVLLVQCRIS----------------DEERRGQLIHALA  526 (579)
T ss_pred             EEE-CCCccCHHHHHHHHHhcCCccCCcEEEEEeccCCCeeEEEEEEecCC----------------ChHHHHHHHHHHH
Confidence            998 999999999999999999998  8999987654   45566665421                2345678999999


Q ss_pred             HHHH-hHhccCCCccccEEEec--CCCCCCCCcc
Q 006530          609 GELR-KWTSKCSFQIGPIHVVD--EPFTVNFLCL  639 (641)
Q Consensus       609 ~~l~-~~~~~~~~~~~~i~~~~--~~~~~~~~~l  639 (641)
                      +.+. .++     .+..+.+++  +.|.+.+||+
T Consensus       527 ~~l~~~~~-----~~~~i~~~~~~~lP~t~~GKv  555 (579)
T PRK09192        527 ALVRSEFG-----VEAAVELVPPHSLPRTSSGKL  555 (579)
T ss_pred             HHHHHHhC-----CCceEEEeCCCCcCCCCCcch
Confidence            9885 465     445577775  7889999996

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4e-53  Score=471.33  Aligned_cols=484  Identities=20%  Similarity=0.247  Sum_probs=380.2

Q ss_pred             HHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEE
Q 006530           24 FRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINV  103 (641)
Q Consensus        24 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v  103 (641)
                      +.+++++.++++|+++|+.+.+   +.+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus         5 l~~~~~~~a~~~p~~~a~~~~~---~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~v   81 (533)
T PRK07798          5 IADLFEAVADAVPDRVALVCGD---RRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPV   81 (533)
T ss_pred             HHHHHHHHHHhCCCceEEEECC---ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEEE
Confidence            4567777788889999988865   4599999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhh
Q 006530          104 VRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRES  183 (641)
Q Consensus       104 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (641)
                      ++++.++.+++.+++++++++.+++++ .....+.+.....+..+.++.+.+......     ..+..++++++......
T Consensus        82 ~l~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  155 (533)
T PRK07798         82 NVNYRYVEDELRYLLDDSDAVALVYER-EFAPRVAEVLPRLPKLRTLVVVEDGSGNDL-----LPGAVDYEDALAAGSPE  155 (533)
T ss_pred             ecCcCCCHHHHHHHHhhcCCCEEEEch-hhHHHHHHHhccCCCccEEEEecCCccccc-----CCccccHHHHHhccCCc
Confidence            999999999999999999999999985 555666666555556666665543321100     11245677766543211


Q ss_pred             hcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhc---------CC------CCCCE
Q 006530          184 RKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIV---------PA------ENGDK  248 (641)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~---------~~------~~~d~  248 (641)
                      .             .... ..++.++++|||||||.||+|+++|+++..........+         .+      ..+++
T Consensus       156 ~-------------~~~~-~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (533)
T PRK07798        156 R-------------DFGE-RSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMR  221 (533)
T ss_pred             C-------------CCCC-CCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCce
Confidence            1             1112 223456899999999999999999999876554432211         11      56789


Q ss_pred             EEEECChhhHHHHHHhHhhhhcCeeEEecc-----hHHHHHHHhhhCCeEEEeCcHHHHH-HHHHHHHHHhhccHHHHHH
Q 006530          249 FLSMLPPWHVYERACGYFIFSRGIELMYTA-----VRNLKDDLQRYQPHYMISVPLVYET-LYSGIQKQIFTSSAARRVV  322 (641)
Q Consensus       249 ~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~-----~~~~~~~i~~~~~t~~~~~P~~~~~-l~~~~~~~~~~~~~~~~~~  322 (641)
                      ++..+|++|..++...+.++..|+++++.+     +..++..++++++|.+.++|..+.. +..... .           
T Consensus       222 ~~~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~-~-----------  289 (533)
T PRK07798        222 RFPAPPLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALE-A-----------  289 (533)
T ss_pred             EEEecchhhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhc-c-----------
Confidence            999999999999998888999999999865     7789999999999999999877643 222111 0           


Q ss_pred             HHHHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCC
Q 006530          323 ARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGS  402 (641)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~  402 (641)
                                                                                    .....+.++|.+++||++
T Consensus       290 --------------------------------------------------------------~~~~~~~~l~~i~~gG~~  307 (533)
T PRK07798        290 --------------------------------------------------------------RGPYDLSSLFAIASGGAL  307 (533)
T ss_pred             --------------------------------------------------------------cccCCCCceEEEEECCCC
Confidence                                                                          000233456999999999


Q ss_pred             CChhH-HHHHHHc-CCeeeeccccccccCeeeecCCCCCcccccc--cCcCCcEEEEeeCCCCccCCCCCC--ceEEEec
Q 006530          403 LPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAARRPTCNVLGSVG--HPINHTEIKIVDAETNEVLPAGSK--GIVKVRG  476 (641)
Q Consensus       403 l~~~l-~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~G--~~~~~~~v~i~d~~~~~~~~~g~~--Gel~v~g  476 (641)
                      +++.+ .++.+.+ +..+++.||+||++..........  ....|  .+.++..++|+++ ++++++.|+.  |+++. +
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~--~~~~g~~~~~~~~~~~i~~~-~~~~~~~g~~~~g~l~~-~  383 (533)
T PRK07798        308 FSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAKG--AVHTGGPRFTIGPRTVVLDE-DGNPVEPGSGEIGWIAR-R  383 (533)
T ss_pred             CCHHHHHHHHHHcCCCeEEeeecccccccccccCCCCC--CccCCCCccCCCceEEEECC-CCCCCCCCCCCeeEEEe-e
Confidence            99988 4455556 789999999999865544332211  12233  7888999999995 4668888887  66665 5


Q ss_pred             CcccccccCCchhhhhccCC---CCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhc
Q 006530          477 SQVMQGYFKNPSATKQALDE---DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR  553 (641)
Q Consensus       477 ~~~~~gY~~~~~~~~~~~~~---~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~  553 (641)
                      +.++.||+++++.+.+.|..   ++||+|||++++++          +|.+++.||.+|+|+. +|++|+|.+||+.+.+
T Consensus       384 ~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~~----------~g~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~  452 (533)
T PRK07798        384 GHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEA----------DGTITLLGRGSVCINT-GGEKVFPEEVEEALKA  452 (533)
T ss_pred             cCccccccCChhhhHHhhccCCCCceEEcCcEEEEcC----------CCcEEEEccccceEec-CCEEeCHHHHHHHHHh
Confidence            68999999999999888743   46999999999999          8999999999999996 9999999999999999


Q ss_pred             CcccceEEEEecCCC----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEec
Q 006530          554 SSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVD  629 (641)
Q Consensus       554 ~p~V~~~~v~g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~  629 (641)
                      +|+|.+++|++.+++    .+.++|+++++                ...+.++++++++++|+.|.     +|..|++++
T Consensus       453 ~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~----------------~~~~~~~l~~~l~~~l~~~~-----~P~~i~~~~  511 (533)
T PRK07798        453 HPDVADALVVGVPDERWGQEVVAVVQLREG----------------ARPDLAELRAHCRSSLAGYK-----VPRAIWFVD  511 (533)
T ss_pred             CccceeEEEEeccCcccCceEEEEEEECCC----------------CCCCHHHHHHHHhhhcccCC-----CCeEEEEcc
Confidence            999999999997654    46677776543                24577899999999999888     778899999


Q ss_pred             CCCCCCCCccc
Q 006530          630 EPFTVNFLCLA  640 (641)
Q Consensus       630 ~~~~~~~~~l~  640 (641)
                      +.|.+.+||+.
T Consensus       512 ~iP~t~~GK~~  522 (533)
T PRK07798        512 EVQRSPAGKAD  522 (533)
T ss_pred             cCCCCCcchhh
Confidence            99999999973

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=2.6e-53  Score=469.45  Aligned_cols=468  Identities=19%  Similarity=0.228  Sum_probs=374.2

Q ss_pred             HHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEEec
Q 006530           26 VFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVR  105 (641)
Q Consensus        26 ~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v~l  105 (641)
                      ..+++.+...|+++++...+   +++||+||.++++++|..|.+.|+.+|++|+++++|+.+++++++||+++|++++++
T Consensus         6 ~~l~~~a~~~p~~~~~~~~~---~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~~~~   82 (503)
T PRK04813          6 ETIEEFAQTQPDFPAYDYLG---EKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIPV   82 (503)
T ss_pred             HHHHHHHHhCCCceEEEeCC---cEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEecC
Confidence            44455556778888877665   459999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhhhc
Q 006530          106 GSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRK  185 (641)
Q Consensus       106 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (641)
                      ++..+.+++.++++..+++.+++++...   .     ...                     ......++++.........
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~---------------------~~~~~~~~~~~~~~~~~~~  133 (503)
T PRK04813         83 DVSSPAERIEMIIEVAKPSLIIATEELP---L-----EIL---------------------GIPVITLDELKDIFATGNP  133 (503)
T ss_pred             CCCChHHHHHHHHHhcCCCEEEeccccc---c-----ccc---------------------CCcEEehHHhhhhhhcccc
Confidence            9999999999999999999999986320   0     000                     0112223332221110000


Q ss_pred             ccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHHHhH
Q 006530          186 AFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGY  265 (641)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~  265 (641)
                       .         .......++++++++|||||||.||+|.++|+++...+......+++..+++++..+|++|..++...+
T Consensus       134 -~---------~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  203 (503)
T PRK04813        134 -Y---------DFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVMDLY  203 (503)
T ss_pred             -c---------cccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHHHHH
Confidence             0         112334678899999999999999999999999999888888888889999999999999999988888


Q ss_pred             hhhhcCeeEEec------chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhH
Q 006530          266 FIFSRGIELMYT------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRI  339 (641)
Q Consensus       266 ~~l~~G~~~v~~------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (641)
                      .++..|+++++.      ++..+++.+++++++++..+|+++..+.......                            
T Consensus       204 ~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~----------------------------  255 (503)
T PRK04813        204 PTLASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFN----------------------------  255 (503)
T ss_pred             HHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccC----------------------------
Confidence            889999998874      3567889999999999999999997654421100                            


Q ss_pred             hcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHc-CCe
Q 006530          340 YEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVK  417 (641)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~-~~~  417 (641)
                                                                     ...++++|.++++|+++++.+ +.+.+.+ +..
T Consensus       256 -----------------------------------------------~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~  288 (503)
T PRK04813        256 -----------------------------------------------EEHLPNLTHFLFCGEELPHKTAKKLLERFPSAT  288 (503)
T ss_pred             -----------------------------------------------cccCCCceEEEEecCcCCHHHHHHHHHHCCCce
Confidence                                                           023455699999999999987 5566666 789


Q ss_pred             eeeccccccccCeeeecCC-----CCCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhh
Q 006530          418 VQVGYGLTESSPVIAARRP-----TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ  492 (641)
Q Consensus       418 v~~~yG~tE~~~~~~~~~~-----~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~  492 (641)
                      +++.||+||++........     ......++|++.++++++|++ +++.+++.|+.|||+++|+.++.||+++++.+..
T Consensus       289 ~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~  367 (503)
T PRK04813        289 IYNTYGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIID-EEGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAE  367 (503)
T ss_pred             EEeCcccchheeEEEEEEecccccccCCCCcccccCCCCEEEEEC-CCCCCCCCCCceEEEEeccccccccCCChhHhHH
Confidence            9999999998755443221     123345799999999999999 5688899999999999999999999999999988


Q ss_pred             ccCC---CCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCC--
Q 006530          493 ALDE---DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ--  567 (641)
Q Consensus       493 ~~~~---~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~--  567 (641)
                      .|..   .+||+|||+|++ +          +|.+++.||.+|+|+. +|++++|.+||+.+.++|+|.+++|++.++  
T Consensus       368 ~~~~~~g~~~~~tGD~~~~-~----------~g~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~  435 (503)
T PRK04813        368 AFFTFDGQPAYHTGDAGYL-E----------DGLLFYQGRIDFQIKL-NGYRIELEEIEQNLRQSSYVESAVVVPYNKDH  435 (503)
T ss_pred             hhccCCCceeEECCceEEe-e----------CCeEEEeccccceEEE-CcEEeCHHHHHHHHHhCCCcceEEEEEeeCCC
Confidence            8732   359999999999 7          8999999999999997 999999999999999999999999998654  


Q ss_pred             --CceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          568 --RRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       568 --~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                        +.+.++++++++..            +......++++++++++++.|+     .|++|.++++.|.+.+||+.
T Consensus       436 ~~~~~~~~v~~~~~~~------------~~~~~~~~~l~~~~~~~l~~~~-----~P~~i~~~~~~P~t~~gKv~  493 (503)
T PRK04813        436 KVQYLIAYVVPKEEDF------------EREFELTKAIKKELKERLMEYM-----IPRKFIYRDSLPLTPNGKID  493 (503)
T ss_pred             CccEEEEEEEeccccc------------cccchhHHHHHHHHHhhCcccc-----CCeEEEEeccCCCCCCCCCc
Confidence              35778888764310            0011122567788888888777     78889999999999999984

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=2.1e-53  Score=464.54  Aligned_cols=429  Identities=23%  Similarity=0.298  Sum_probs=356.1

Q ss_pred             hhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEEecCCCC
Q 006530           30 NCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRS  109 (641)
Q Consensus        30 ~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v~l~~~~  109 (641)
                      ..++++|+++|+...+.   .+||.||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|++++++++..
T Consensus        11 ~~a~~~~~~~a~~~~~~---~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v~~~~~~   87 (458)
T PRK09029         11 HWAQVRPQAIALRLNDE---VLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPLNPQL   87 (458)
T ss_pred             HHHHhCCCceeeecCCc---ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEeecCCCC
Confidence            33567788888876654   499999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhhhcccCC
Q 006530          110 SSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSD  189 (641)
Q Consensus       110 ~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (641)
                      +.+++..++++++++.+++++... . +..       +..                     ..+..       ...    
T Consensus        88 ~~~~~~~~~~~~~~~~~i~~~~~~-~-~~~-------~~~---------------------~~~~~-------~~~----  126 (458)
T PRK09029         88 PQPLLEELLPSLTLDFALVLEGEN-T-FSA-------LTS---------------------LHLQL-------VEG----  126 (458)
T ss_pred             CHHHHHHHHHhcCCCEEEEcCccc-c-hhh-------ccc---------------------ccccc-------ccc----
Confidence            999999999999999999875321 1 100       000                     00000       000    


Q ss_pred             CchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHHHhHhhhh
Q 006530          190 SNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFS  269 (641)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~  269 (641)
                             .......++++++++|||||||.||+|.+||++++..+......++..++++++..+|++|.+++...+.++.
T Consensus       127 -------~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~  199 (458)
T PRK09029        127 -------AHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQGIVWRWLY  199 (458)
T ss_pred             -------cCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhHHHHHHHh
Confidence                   0112346789999999999999999999999999999988888889999999999999999999877777899


Q ss_pred             cCeeEEecchHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhHhcccccccCC
Q 006530          270 RGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQ  349 (641)
Q Consensus       270 ~G~~~v~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (641)
                      .|+++++.+...+...+  .++|.+..+|+++..+......                                       
T Consensus       200 ~G~~v~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~---------------------------------------  238 (458)
T PRK09029        200 AGATLVVRDKQPLEQAL--AGCTHASLVPTQLWRLLDNRSE---------------------------------------  238 (458)
T ss_pred             CCceEEeCChHHHHHHH--hhceeeecChHHHHHHHhcccc---------------------------------------
Confidence            99999998777777777  4789999999998776542110                                       


Q ss_pred             CCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhHHHHHHHcCCeeeeccccccccC
Q 006530          350 KQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSP  429 (641)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l~~~~~~~~~~v~~~yG~tE~~~  429 (641)
                                                              ..++|.+++||+++++.+.+.++.+|.++++.||+||++.
T Consensus       239 ----------------------------------------~~~l~~i~~gG~~~~~~~~~~~~~~g~~~~~~YG~tE~~~  278 (458)
T PRK09029        239 ----------------------------------------PLSLKAVLLGGAAIPVELTEQAEQQGIRCWCGYGLTEMAS  278 (458)
T ss_pred             ----------------------------------------CCcceEEEECCCCCCHHHHHHHHHcCCcEeccccccccCc
Confidence                                                    1124889999999999986666777999999999999986


Q ss_pred             eeeecCCCCCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccCCCCccccCceeEEc
Q 006530          430 VIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA  509 (641)
Q Consensus       430 ~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~  509 (641)
                      .......  ....++|.|+++++++|++            |||+++|+.++.||+++++.+.... .+|||+|||+|+++
T Consensus       279 ~~~~~~~--~~~~~~G~~~~~~~~~i~~------------gel~v~g~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~  343 (458)
T PRK09029        279 TVCAKRA--DGLAGVGSPLPGREVKLVD------------GEIWLRGASLALGYWRQGQLVPLVN-DEGWFATRDRGEWQ  343 (458)
T ss_pred             ceeccCC--CCCCCCCCCCCCCEEEEeC------------CEEEEecCceeeeeecCcccccccc-CCCccCCCCcEEEe
Confidence            5443222  2235699999999999976            8999999999999999988775443 58999999999998


Q ss_pred             CCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC----ceEEEEecCHHHHHHHH
Q 006530          510 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAA  585 (641)
Q Consensus       510 ~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----~~~a~vv~~~~~~~~~~  585 (641)
                      +           |.+++.||++|+|++ +|++|+|.+||+.|.+||+|.||+|++.+++    .+.++|+++.       
T Consensus       344 ~-----------g~l~~~gR~~d~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~-------  404 (458)
T PRK09029        344 N-----------GELTILGRLDNLFFS-GGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDS-------  404 (458)
T ss_pred             C-----------CEEEEecccccceee-CCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCc-------
Confidence            5           999999999999997 9999999999999999999999999998765    4567777542       


Q ss_pred             HHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          586 KRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       586 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                                 ..+.++++++++++|+.|+     +|.+|+.+++.|.+.+||+.
T Consensus       405 -----------~~~~~~l~~~~~~~l~~~~-----~P~~~~~~~~~p~t~~gKi~  443 (458)
T PRK09029        405 -----------EAAVVNLAEWLQDKLARFQ-----QPVAYYLLPPELKNGGIKIS  443 (458)
T ss_pred             -----------ccCHHHHHHHHHhhchhcc-----CCeEEEEecccccCcCCCcC
Confidence                       3467899999999999999     77889999989999999974

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=4.8e-54  Score=567.04  Aligned_cols=473  Identities=20%  Similarity=0.208  Sum_probs=389.2

Q ss_pred             hHHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q 006530           23 GFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN  102 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~  102 (641)
                      .+..+.++++.++|+++|+...++.   +||+||.++++++|+.|.+.|+++|++|+|+++++++++++++|++++|+++
T Consensus      3721 ~~~~~~~~~~~~~p~~~Av~~~~~~---~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG~a~ 3797 (4334)
T PRK05691       3721 SYVRLFEAQVAAHPQRIAASCLDQQ---WSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAGAGY 3797 (4334)
T ss_pred             CHHHHHHHHHHhCCCceEEEcCCCc---ccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEE
Confidence            4556777888899999999998876   9999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccc--cEEEEEeCCCCCCCCCccCCCCcccHHHHHHhh
Q 006530          103 VVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAM--RFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLG  180 (641)
Q Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (641)
                      ||++|.++.+.+.+++++++++++++++ ................  ..++...                    +.....
T Consensus      3798 vpld~~~p~~r~~~il~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~ 3856 (4334)
T PRK05691       3798 LPLDPGLPAQRLQRIIELSRTPVLVCSA-ACREQARALLDELGCANRPRLLVWE--------------------EVQAGE 3856 (4334)
T ss_pred             eCCCCCChHHHHHHHHHhcCCCEEEecC-cccchhhhhhcccccccccceeeec--------------------cccccc
Confidence            9999999999999999999999999986 3222222222111110  1111110                    000000


Q ss_pred             hhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHH
Q 006530          181 RESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYE  260 (641)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g  260 (641)
                      ....            .+.....++++++++|||||||.||||+++|+++.+.+.+....+++.++|+++...++++..+
T Consensus      3857 ~~~~------------~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fd~s 3924 (4334)
T PRK05691       3857 VASH------------NPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFDIS 3924 (4334)
T ss_pred             cccc------------CCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEEecCCchhHH
Confidence            0000            1123456899999999999999999999999999999999989999999999999999999999


Q ss_pred             HHHhHhhhhcCeeEEecc------hHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHH
Q 006530          261 RACGYFIFSRGIELMYTA------VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYT  334 (641)
Q Consensus       261 ~~~~~~~l~~G~~~v~~~------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (641)
                      ....+.++..|+++++.+      +..+...++++++|++..+|+++..+....                          
T Consensus      3925 ~~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~-------------------------- 3978 (4334)
T PRK05691       3925 VWQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAED-------------------------- 3978 (4334)
T ss_pred             HHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhc--------------------------
Confidence            999999999999999853      678999999999999999999998775321                          


Q ss_pred             HHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHH
Q 006530          335 AFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEA  413 (641)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~  413 (641)
                                                                          ...+.++|.+++||++++..+ ++|.+.
T Consensus      3979 ----------------------------------------------------~~~~~~lr~~~~gGe~l~~~~~~~~~~~ 4006 (4334)
T PRK05691       3979 ----------------------------------------------------RQALDGLRWMLPTGEAMPPELARQWLQR 4006 (4334)
T ss_pred             ----------------------------------------------------cccCCCceEEEecCCcCCHHHHHHHHHh
Confidence                                                                023445699999999999987 666666


Q ss_pred             c-CCeeeeccccccccCeeeecCCCC----CcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCch
Q 006530          414 I-GVKVQVGYGLTESSPVIAARRPTC----NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPS  488 (641)
Q Consensus       414 ~-~~~v~~~yG~tE~~~~~~~~~~~~----~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~  488 (641)
                      + +.++++.||+||++..++......    ....++|+|++++++.|+| +.++++|.|.+|||+|+|+.+++||+|+|+
T Consensus      4007 ~~~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~~p~g~~GEL~i~G~~v~~GY~~~~~ 4085 (4334)
T PRK05691       4007 YPQIGLVNAYGPAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLD-EALELVPLGAVGELCVAGTGVGRGYVGDPL 4085 (4334)
T ss_pred             CCCCeEEeCccCccceeEEEEEEcccccccCCcCCCCCccCCCEEEEEC-CCCCCCCCCCceEEEEecccccccccCCcc
Confidence            5 789999999999987665443221    2234699999999999998 678899999999999999999999999999


Q ss_pred             hhhhccC-------CCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEE
Q 006530          489 ATKQALD-------EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIV  561 (641)
Q Consensus       489 ~~~~~~~-------~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~  561 (641)
                      .|.++|.       .++||+|||+|++++          ||.|+|+||+|++||+ +|++|.+.|||+.|.++|+|.+++
T Consensus      4086 ~t~~~f~~~p~~~~~~~~yrTGDl~~~~~----------dG~l~~~GR~d~qvki-~G~riel~eIE~~l~~~~~v~~a~ 4154 (4334)
T PRK05691       4086 RTALAFVPHPFGAPGERLYRTGDLARRRS----------DGVLEYVGRIDHQVKI-RGYRIELGEIEARLHEQAEVREAA 4154 (4334)
T ss_pred             cchhhcccCCCCCCCceeeccCcceeecC----------CCcEEEecccCCcEEe-ceEEecHHHHHHHHHhCCCccEEE
Confidence            9999984       356999999999999          9999999999999998 999999999999999999999998


Q ss_pred             EEec---CCCceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCc
Q 006530          562 VIGQ---DQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLC  638 (641)
Q Consensus       562 v~g~---~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~  638 (641)
                      |+..   .++.+.+++++..+..             ......++++++++++|+.|+     .|..|+.+++.|.+.|||
T Consensus      4155 v~~~~~~~~~~l~a~~~~~~~~~-------------~~~~~~~~l~~~l~~~Lp~ym-----vP~~~~~~~~lP~t~~GK 4216 (4334)
T PRK05691       4155 VAVQEGVNGKHLVGYLVPHQTVL-------------AQGALLERIKQRLRAELPDYM-----VPLHWLWLDRLPLNANGK 4216 (4334)
T ss_pred             EEEecCCCCcEEEEEEeCCcccc-------------cchHHHHHHHHHHHhhCChhh-----cCcceeecccCCCCCCCc
Confidence            8753   3457889988764310             011234678999999999999     667799999999999999


Q ss_pred             c
Q 006530          639 L  639 (641)
Q Consensus       639 l  639 (641)
                      +
T Consensus      4217 i 4217 (4334)
T PRK05691       4217 L 4217 (4334)
T ss_pred             c
Confidence            7

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=3.3e-53  Score=511.96  Aligned_cols=474  Identities=19%  Similarity=0.250  Sum_probs=365.2

Q ss_pred             HHhhhhhhhh-hhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEEec
Q 006530           27 FTRNCVDAVA-TRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVR  105 (641)
Q Consensus        27 ~~~~~~~~~~-~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v~l  105 (641)
                      ..++++++++ ++.++.+.++  +++||+||.++++++|+.|.+ |+++||+|+++++|+++++++++||+++|++++++
T Consensus       636 ~l~~~~~~~~~~~~ai~~~~~--~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l  712 (1140)
T PRK06814        636 ALIEAAKIHGFKKLAVEDPVN--GPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSAGRVPAMI  712 (1140)
T ss_pred             HHHHHHHHcCCCCeEeECCCC--CccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEc
Confidence            3344445554 5666654322  459999999999999999975 99999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHhcCceEEEecChhhHHHH--HHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhh
Q 006530          106 GSRSSSEELLHIYNHSESVALAVENPEFFNRI--AETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRES  183 (641)
Q Consensus       106 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (641)
                      |++.+.+++.+++++++++.+++++ ...+..  .+.....+....++.+++....          ...++++.......
T Consensus       713 ~~~~~~~~l~~~l~~~~~~~vi~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~~~~~~~  781 (1140)
T PRK06814        713 NFSAGIANILSACKAAQVKTVLTSR-AFIEKARLGPLIEALEFGIRIIYLEDVRAQ----------IGLADKIKGLLAGR  781 (1140)
T ss_pred             CCCCCHHHHHHHHHHcCCCEEEecH-HHHhhhcchhHHHHhccCceEEEehHhhcc----------CChHHHHHHHhhcc
Confidence            9999999999999999999999985 332221  1111112222233333211100          01111111110000


Q ss_pred             hcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHHH
Q 006530          184 RKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC  263 (641)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~  263 (641)
                      .. .         .......++|+++++|||||||.||||.+||+++.+.+......++..++|++++.+|++|.+++..
T Consensus       782 ~~-~---------~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~  851 (1140)
T PRK06814        782 FP-L---------VYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTG  851 (1140)
T ss_pred             CC-c---------cccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHHH
Confidence            00 0         0112356899999999999999999999999999998888888889999999999999999999854


Q ss_pred             -hHhhhhcCeeEEecc----hHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHh
Q 006530          264 -GYFIFSRGIELMYTA----VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKR  338 (641)
Q Consensus       264 -~~~~l~~G~~~v~~~----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (641)
                       .+.++..|+++++.+    ...+.+.++++++|++..+|+++..+.+...                             
T Consensus       852 ~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~-----------------------------  902 (1140)
T PRK06814        852 GLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYAH-----------------------------  902 (1140)
T ss_pred             HHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhcc-----------------------------
Confidence             666799999998753    3467788999999999999999887654210                             


Q ss_pred             HhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHcCCe
Q 006530          339 IYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVK  417 (641)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~~~~  417 (641)
                                                                      ..+++++|.+++||+++++++ +.+.+.++.+
T Consensus       903 ------------------------------------------------~~~~~~lr~v~~gg~~l~~~~~~~~~~~~~~~  934 (1140)
T PRK06814        903 ------------------------------------------------PYDFRSLRYVFAGAEKVKEETRQTWMEKFGIR  934 (1140)
T ss_pred             ------------------------------------------------cccccceeEEEEcCCcCCHHHHHHHHHHhCCc
Confidence                                                            013345699999999999988 4556667999


Q ss_pred             eeeccccccccCeeeecCCCCCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccCCC
Q 006530          418 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED  497 (641)
Q Consensus       418 v~~~yG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~  497 (641)
                      +++.||+||++..+..+.+....++++|+|.+++++++.+.+     ..|+.|||+++|+.++.||+++++........+
T Consensus       935 ~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~g~~~~~~~~~-----~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~ 1009 (1140)
T PRK06814        935 ILEGYGVTETAPVIALNTPMHNKAGTVGRLLPGIEYRLEPVP-----GIDEGGRLFVRGPNVMLGYLRAENPGVLEPPAD 1009 (1140)
T ss_pred             EEeccccccccceEEecCCCCCCCCcCCccCCCCeEEEeecC-----CCCCceEEEEeCCCcchhhcCCCCCCccccCCC
Confidence            999999999988776655555667899999999999998732     135789999999999999999765432222358


Q ss_pred             CccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCCceE---EEE
Q 006530          498 GWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG---AII  574 (641)
Q Consensus       498 g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~~~~---a~v  574 (641)
                      |||+|||+|++|+          ||.+++.||.||+|++ +|++|+|.|||+.+.+||.|.+++|++.+++..+   +.+
T Consensus      1010 g~~~TGDl~~~d~----------dG~l~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~ 1078 (1140)
T PRK06814       1010 GWYDTGDIVTIDE----------EGFITIKGRAKRFAKI-AGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILL 1078 (1140)
T ss_pred             CeEecCCEEEECC----------CCeEEEEecccCeeee-CCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEE
Confidence            9999999999999          9999999999999997 9999999999999999999999999998775433   222


Q ss_pred             ecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHH-HHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          575 VPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       575 v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                      +..                  .+.+.+++.++++++ +++|+     .|++|.++++.|.+.+||+.
T Consensus      1079 ~~~------------------~~~~~~~l~~~~~~~~l~~~~-----~P~~i~~v~~lP~t~~GKi~ 1122 (1140)
T PRK06814       1079 TTA------------------SDATRAAFLAHAKAAGASELM-----VPAEIITIDEIPLLGTGKID 1122 (1140)
T ss_pred             EcC------------------CCcCHHHHHHHHHHcCCCccc-----CCcEEEEecCcCCCCCCCCc
Confidence            221                  234678888988875 88887     77889999999999999973

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=9e-53  Score=465.84  Aligned_cols=465  Identities=21%  Similarity=0.253  Sum_probs=365.6

Q ss_pred             EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCceEEEe
Q 006530           49 RVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVALAV  128 (641)
Q Consensus        49 ~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~  128 (641)
                      +.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++++++..+.+++.++++.++++.+++
T Consensus        10 ~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~   89 (509)
T PRK12406         10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIA   89 (509)
T ss_pred             eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEE
Confidence            55999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cChhhHHHHHHhhcccccccEEEEEeCCCCC-----CCCC-ccCCCCcccHHHHHHhhhhhhcccCCCchhhcccccCCC
Q 006530          129 ENPEFFNRIAETLCSKAAMRFIILLWGKKSS-----VAPD-IVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETI  202 (641)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (641)
                      +. .....+.+....   ....+........     .... ........+|++++....                .....
T Consensus        90 ~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~  149 (509)
T PRK12406         90 HA-DLLHGLASALPA---GVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE----------------PYDGP  149 (509)
T ss_pred             cc-chhhhhhhhhhc---ccceeecccccccccccccccccccCCCCccCHHHHhcccC----------------ccCCC
Confidence            85 444433322211   1111111100000     0000 000112345555432211                11233


Q ss_pred             CCCCEEEEEeCCCCCCCchhHHhhHHH---HHHHHHHHhhhcCCCCCCEEEEECChhhHHHHHHhHhhhhcCeeEEec--
Q 006530          203 GSDDIATYVYTSGTTGNPKGVMLTHKN---LLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--  277 (641)
Q Consensus       203 ~~~~~a~i~~TSGTTG~pK~v~~sh~~---l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~--  277 (641)
                      ..+++++++|||||||.||+|.++|..   +..........+++.+++++++.+|++|..+....+.++..|+++++.  
T Consensus       150 ~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~  229 (509)
T PRK12406        150 PVPQPQSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPR  229 (509)
T ss_pred             CCCCceEEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccC
Confidence            578999999999999999999876544   444444445567889999999999999998887777788889998874  


Q ss_pred             -chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhHhcccccccCCCCchhHH
Q 006530          278 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  356 (641)
Q Consensus       278 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (641)
                       ++..+++.++++++|++.++|+++..+........                                            
T Consensus       230 ~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~--------------------------------------------  265 (509)
T PRK12406        230 FDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVR--------------------------------------------  265 (509)
T ss_pred             CCHHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhc--------------------------------------------
Confidence             57889999999999999999999988764211100                                            


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhHHHHH-HHcCCeeeeccccccccCeeeecC
Q 006530          357 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAIGVKVQVGYGLTESSPVIAARR  435 (641)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l~~~~-~~~~~~v~~~yG~tE~~~~~~~~~  435 (641)
                                                   ...++.++|.++.||+++++++.+.+ +.++..+++.||+||++.++..+.
T Consensus       266 -----------------------------~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~  316 (509)
T PRK12406        266 -----------------------------AKYDVSSLRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATS  316 (509)
T ss_pred             -----------------------------ccCCCCceeEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccccCceEecCc
Confidence                                         00134456999999999999985544 456899999999999987666543


Q ss_pred             CC-CCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccc-cccCCchhhhhccCCCCccccCceeEEcCCCC
Q 006530          436 PT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQ-GYFKNPSATKQALDEDGWLNTGDIGWIAPHHS  513 (641)
Q Consensus       436 ~~-~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~-gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~  513 (641)
                      .. ...++++|.|.++++++++| +++++++.|+.|||+++|+.++. ||+++++.+...+ .++||+|||++++++   
T Consensus       317 ~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~-~~~~~~TGD~~~~~~---  391 (509)
T PRK12406        317 EDALSHPGTVGKAAPGAELRFVD-EDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEID-RGGFITSGDVGYLDA---  391 (509)
T ss_pred             ccccccCCCcCccCCCcEEEEEC-CCCCCCCCCCceEEEEECCccccccccCCchhccccc-CCCCeEEccEEEEcC---
Confidence            32 24567899999999999999 45788999999999999998875 9999988877665 689999999999999   


Q ss_pred             CCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC----ceEEEEecCHHHHHHHHHHcC
Q 006530          514 RGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLS  589 (641)
Q Consensus       514 ~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----~~~a~vv~~~~~~~~~~~~~~  589 (641)
                             +|.+++.||.+|+|++ +|.+|+|.+||+.|.++|+|.+++|++.+++    .+.++|++..+          
T Consensus       392 -------~g~~~~~GR~~d~ik~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~----------  453 (509)
T PRK12406        392 -------DGYLFLCDRKRDMVIS-GGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPG----------  453 (509)
T ss_pred             -------CceEEEeecccceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEECCC----------
Confidence                   8999999999999997 9999999999999999999999999997654    36677776532          


Q ss_pred             CCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          590 IVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       590 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                            ...+.+++++++++.++.|+     .|..++++++.|.+.+||+.
T Consensus       454 ------~~~~~~~l~~~l~~~l~~~~-----~P~~i~~~~~iP~t~~GK~~  493 (509)
T PRK12406        454 ------ATLDEADIRAQLKARLAGYK-----VPKHIEIMAELPREDSGKIF  493 (509)
T ss_pred             ------CCCCHHHHHHHHHHhcccCC-----CCcEEEEeccCCCCCccchh
Confidence                  23567899999999999988     77789999999999999973

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7.1e-53  Score=465.89  Aligned_cols=461  Identities=21%  Similarity=0.283  Sum_probs=365.5

Q ss_pred             EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCceEEEe
Q 006530           49 RVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVALAV  128 (641)
Q Consensus        49 ~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~  128 (641)
                      +.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++.+++
T Consensus        10 ~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~   89 (502)
T PRK08276         10 EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIV   89 (502)
T ss_pred             cEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEE
Confidence            45999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cChhhHHHHHHhhcccc-cccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhhhcccCCCchhhcccccCCCCCCCE
Q 006530          129 ENPEFFNRIAETLCSKA-AMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDI  207 (641)
Q Consensus       129 ~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (641)
                      ++ .....+.+...... .++.++......          .....|++......                .......++.
T Consensus        90 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~----------------~~~~~~~~~~  142 (502)
T PRK08276         90 SA-ALADTAAELAAELPAGVPLLLVVAGPV----------PGFRSYEEALAAQP----------------DTPIADETAG  142 (502)
T ss_pred             cc-chhhHHHHHhhhccccccEEEEeCCCC----------CccccHHHHHhcCC----------------CCCCCCCCcc
Confidence            86 44444444433333 344444432111          12234555433211                1112345678


Q ss_pred             EEEEeCCCCCCCchhHHhhHHHHHHHH------HHHhhhcCCCCCCEEEEECChhhHHHHHHhHhhhhcCeeEEec---c
Q 006530          208 ATYVYTSGTTGNPKGVMLTHKNLLHQI------RSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---A  278 (641)
Q Consensus       208 a~i~~TSGTTG~pK~v~~sh~~l~~~~------~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~---~  278 (641)
                      ++++|||||||.||+|.++|.++....      ...........++++++.+|++|..++...+.++..|+++++.   +
T Consensus       143 a~i~~TSGtTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~  222 (502)
T PRK08276        143 ADMLYSSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFD  222 (502)
T ss_pred             eEEEECCCCCCCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCC
Confidence            999999999999999998887654222      2222222335678999999999999988877889999999875   4


Q ss_pred             hHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhHhcccccccCCCCchhHHHH
Q 006530          279 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  358 (641)
Q Consensus       279 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (641)
                      +..+++.++++++|++.++|+++..+.........                                             
T Consensus       223 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---------------------------------------------  257 (502)
T PRK08276        223 AEEALALIERYRVTHSQLVPTMFVRMLKLPEEVRA---------------------------------------------  257 (502)
T ss_pred             HHHHHHHHHHhCCeEEEehHHHHHHHHhCccccCC---------------------------------------------
Confidence            78899999999999999999999888653211000                                             


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhHHH-HHHHcCCeeeeccccccccCeeeecCCC
Q 006530          359 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGVKVQVGYGLTESSPVIAARRPT  437 (641)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l~~-~~~~~~~~v~~~yG~tE~~~~~~~~~~~  437 (641)
                                                  .-+++++|.+++||++++.++.+ +.+.++..+++.||+||++.++......
T Consensus       258 ----------------------------~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~  309 (502)
T PRK08276        258 ----------------------------RYDVSSLRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSED  309 (502)
T ss_pred             ----------------------------CCCcccceEEEecCCCCCHHHHHHHHHHhCcHhhhhcccccccceeEecCcc
Confidence                                        01234569999999999999844 4455688899999999998766554432


Q ss_pred             -CCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccCCCCccccCceeEEcCCCCCCC
Q 006530          438 -CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR  516 (641)
Q Consensus       438 -~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~  516 (641)
                       ...++++|.|+ +++++|+| +++.+++.|+.|||+++|+.++.||++++..+...+..++||+|||++++++      
T Consensus       310 ~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~------  381 (502)
T PRK08276        310 WLAHPGSVGKAV-LGEVRILD-EDGNELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDE------  381 (502)
T ss_pred             ccccCCCcceec-ccEEEEEC-CCCCCCcCCCceEEEEECCCccchhcCCHHHHHHHhcCCCceeecceEEEcC------
Confidence             24557899999 78999998 4578999999999999999999999999999999997779999999999999      


Q ss_pred             ccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC----ceEEEEecCHHHHHHHHHHcCCCC
Q 006530          517 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVH  592 (641)
Q Consensus       517 ~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~  592 (641)
                          +|.+++.||++|+++. +|++|+|.+||..|.++|+|.+++|++..++    .+.++|+++.+.            
T Consensus       382 ----~g~~~~~GR~~~~i~~-~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~------------  444 (502)
T PRK08276        382 ----DGYLYLTDRKSDMIIS-GGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGA------------  444 (502)
T ss_pred             ----CcCEEEeccCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCCC------------
Confidence                8999999999999997 9999999999999999999999999997654    577888876431            


Q ss_pred             CChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          593 ADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       593 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                       .......++++++++++|+.|+     .|+.++++++.|.+.+||+.
T Consensus       445 -~~~~~~~~~i~~~~~~~l~~~~-----~p~~i~~~~~lP~t~~GKi~  486 (502)
T PRK08276        445 -DAGDALAAELIAWLRGRLAHYK-----CPRSIDFEDELPRTPTGKLY  486 (502)
T ss_pred             -CCChhhHHHHHHHHHhhccCCC-----CCcEEEEecCCCCCcccchh
Confidence             0011223467888888887777     77889999999999999963

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=2.2e-53  Score=560.74  Aligned_cols=467  Identities=20%  Similarity=0.248  Sum_probs=388.3

Q ss_pred             hHHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q 006530           23 GFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN  102 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~  102 (641)
                      .+.+.+++++..+|+++|+.++++.   +||+||.++++++|+.|.+.|+++|++|+|+++|+++++++++|++++|+++
T Consensus      1132 ~l~~~~~~~a~~~p~~~Al~~~~~~---lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~lailkaG~~~ 1208 (4334)
T PRK05691       1132 WLPELLNEQARQTPERIALVWDGGS---LDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLAILKAGGAY 1208 (4334)
T ss_pred             CHHHHHHHHHHhCCCCeEEEECCce---EeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence            4666777788889999999887754   9999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhh
Q 006530          103 VVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRE  182 (641)
Q Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (641)
                      +|++|.++.+++.++++++++++++++. .....+.    ...... .+...                    ++......
T Consensus      1209 vpld~~~p~~rl~~il~~~~~~~vi~~~-~~~~~~~----~~~~~~-~~~~~--------------------~~~~~~~~ 1262 (4334)
T PRK05691       1209 VPLDPDYPAERLAYMLADSGVELLLTQS-HLLERLP----QAEGVS-AIALD--------------------SLHLDSWP 1262 (4334)
T ss_pred             EecCcCChHHHHHHHHHhcCCCEEEecc-hhhhhcc----cccCce-EEeec--------------------cccccccC
Confidence            9999999999999999999999999985 3322221    111111 11110                    00000000


Q ss_pred             hhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHH
Q 006530          183 SRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERA  262 (641)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~  262 (641)
                      ..            .+.....++++++++|||||||.||||+++|+++.+.+.+....+++.++|+++...|++|..+..
T Consensus      1263 ~~------------~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~s~~ 1330 (4334)
T PRK05691       1263 SQ------------APGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPISFDVSVW 1330 (4334)
T ss_pred             CC------------CCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHH
Confidence            00            111234678999999999999999999999999999999888889999999999999999999988


Q ss_pred             HhHhhhhcCeeEEec------chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHH
Q 006530          263 CGYFIFSRGIELMYT------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAF  336 (641)
Q Consensus       263 ~~~~~l~~G~~~v~~------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (641)
                      ..+.++..|+++++.      ++..+.+.++++++|++..+|+++..+.....                           
T Consensus      1331 ~~~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~--------------------------- 1383 (4334)
T PRK05691       1331 ECFWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPL--------------------------- 1383 (4334)
T ss_pred             HHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCcc---------------------------
Confidence            889999999999985      36789999999999999999999988754210                           


Q ss_pred             HhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHc-
Q 006530          337 KRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-  414 (641)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~-  414 (641)
                                                                        ...+.++|.+++||++++..+ +.+.+.+ 
T Consensus      1384 --------------------------------------------------~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~ 1413 (4334)
T PRK05691       1384 --------------------------------------------------AAACTSLRRLFSGGEALPAELRNRVLQRLP 1413 (4334)
T ss_pred             --------------------------------------------------cccCCcccEEEEeecCCCHHHHHHHHHhCC
Confidence                                                              023455699999999999987 5566666 


Q ss_pred             CCeeeeccccccccCeeeecC--CCCCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhh
Q 006530          415 GVKVQVGYGLTESSPVIAARR--PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ  492 (641)
Q Consensus       415 ~~~v~~~yG~tE~~~~~~~~~--~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~  492 (641)
                      +.++++.||+||++..++...  .......++|+|+++++++|+| +.++++|.|+.|||+|+|+.+++||+++|+.|.+
T Consensus      1414 ~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~vp~G~~GEL~i~G~~v~~GYl~~p~~t~~ 1492 (4334)
T PRK05691       1414 QVQLHNRYGPTETAINVTHWQCQAEDGERSPIGRPLGNVLCRVLD-AELNLLPPGVAGELCIGGAGLARGYLGRPALTAE 1492 (4334)
T ss_pred             CcEEEeCCCcChheeeeeeeecccccCCCCcccceeCCCEEEEEC-CCCCCCCCCCceEEEecCcccchhhcCCccccHh
Confidence            689999999999986655422  2234456899999999999999 5688999999999999999999999999999999


Q ss_pred             ccCC-------CCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEec
Q 006530          493 ALDE-------DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ  565 (641)
Q Consensus       493 ~~~~-------~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~  565 (641)
                      .|..       .+||+|||+|++++          ||.++++||+||+||+ +|++|+|.|||+.|.+||+|.+|+|++.
T Consensus      1493 ~f~~~p~~~~~~r~yrTGDl~~~~~----------dG~l~~~GR~d~qiki-~G~rie~~eIE~~l~~~~~V~~a~v~~~ 1561 (4334)
T PRK05691       1493 RFVPDPLGEDGARLYRTGDRARWNA----------DGALEYLGRLDQQVKL-RGFRVEPEEIQARLLAQPGVAQAAVLVR 1561 (4334)
T ss_pred             hCCCCCCCCCCceEEEccceEEECC----------CCCEEEecccCcEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEe
Confidence            8843       35999999999999          9999999999999998 9999999999999999999999999975


Q ss_pred             CC---CceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          566 DQ---RRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       566 ~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                      ++   +.+.+++++..+                .....++++++++++|+.|+     .|+.|+.+++.|.+.|||+-
T Consensus      1562 ~~~~~~~lva~~~~~~~----------------~~~~~~~l~~~l~~~Lp~y~-----vP~~~~~~~~lP~t~~GKid 1618 (4334)
T PRK05691       1562 EGAAGAQLVGYYTGEAG----------------QEAEAERLKAALAAELPEYM-----VPAQLIRLDQMPLGPSGKLD 1618 (4334)
T ss_pred             eCCCCCEEEEEEEeCCC----------------CCCCHHHHHHHHHHhCcccc-----CCcEEEEccccCCCCCCCcC
Confidence            43   467888876532                23456789999999999999     77789999999999999973

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=4.1e-53  Score=466.66  Aligned_cols=444  Identities=15%  Similarity=0.115  Sum_probs=325.6

Q ss_pred             cCCChhHHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCceEEEecChh-----hHHHHHHhhcccccccEEEEEeCC
Q 006530           82 SDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVALAVENPE-----FFNRIAETLCSKAAMRFIILLWGK  156 (641)
Q Consensus        82 ~~n~~e~i~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~  156 (641)
                      ++|++++++++|||+++|++++|+|+.++.+++.+++++++++++|+++..     ....+.+..... ..+.++.....
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~   79 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAA-PAKAIVLPAAG   79 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcc-cceEEEEeccC
Confidence            589999999999999999999999999999999999999999999998531     112222222111 12222222111


Q ss_pred             CCCCCCCccCCCCcccHHHHHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHH
Q 006530          157 KSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRS  236 (641)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~  236 (641)
                      ... ...  .......|++++..+.......  . .   ........++|+++|+|||||||.||||++||++++.....
T Consensus        80 ~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~--~-~---~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~  150 (499)
T PLN03051         80 EPV-AVP--LREQDLSWCDFLGVAAAQGSVG--G-N---EYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASD  150 (499)
T ss_pred             ccc-CCc--cccCcccHHHHHhhhccccccc--c-c---cCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHH
Confidence            100 000  0011235666653221100000  0 0   00111235689999999999999999999999998876666


Q ss_pred             HhhhcCCCCCCEEEEECChhhHHHHHHhHhhhhcCeeEEec----chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHH
Q 006530          237 LYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQI  312 (641)
Q Consensus       237 ~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  312 (641)
                      ....+++.++|++++.+|++|.+++...+.++..|+++++.    ++..+++.++++++|++.++|+++..|........
T Consensus       151 ~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~  230 (499)
T PLN03051        151 GWAHMDIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAM  230 (499)
T ss_pred             HHHhcCCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCcccc
Confidence            56667888999999999999999987677789999999874    35789999999999999999999988764211000


Q ss_pred             hhccHHHHHHHHHHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCC
Q 006530          313 FTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGI  392 (641)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  392 (641)
                                                                                               -..++++
T Consensus       231 -------------------------------------------------------------------------~~~~~~~  237 (499)
T PLN03051        231 -------------------------------------------------------------------------EGLDWSK  237 (499)
T ss_pred             -------------------------------------------------------------------------ccCCchh
Confidence                                                                                     0013345


Q ss_pred             ceeEEeecCCCChhHHHHHHH-c--CCeeeeccccccccCeeeec-CCCCCcccccccCcCCcEEEEeeCCCCccCCCC-
Q 006530          393 SKAGVSGGGSLPMHIDLFYEA-I--GVKVQVGYGLTESSPVIAAR-RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAG-  467 (641)
Q Consensus       393 ~r~i~~gG~~l~~~l~~~~~~-~--~~~v~~~yG~tE~~~~~~~~-~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g-  467 (641)
                      +|.+++||++++..+.+++.. +  +.++++.||+||++..+... ......++++|.|.++++++|+| +++++++.| 
T Consensus       238 Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~g~~~~~g~  316 (499)
T PLN03051        238 LRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLN-DNGVPYPDDQ  316 (499)
T ss_pred             heEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeecccccCCCCCccccCCCCCceEEEEC-CCCCCCCCCC
Confidence            599999999999887555554 3  47899999999986543322 22233467899999999999999 568888888 


Q ss_pred             -CCceEEEecCcc--cccccCCchhhhhccCCCC----------ccccCceeEEcCCCCCCCccccCceEEEeccccceE
Q 006530          468 -SKGIVKVRGSQV--MQGYFKNPSATKQALDEDG----------WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTI  534 (641)
Q Consensus       468 -~~Gel~v~g~~~--~~gY~~~~~~~~~~~~~~g----------~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i  534 (641)
                       +.|||+++||.+  +.||++++. + +.+. +|          ||+|||+|++|+          ||+++|+||+||+|
T Consensus       317 ~~~Gel~v~g~~~~~~~gy~~~~~-~-~~~~-~g~~~~~~~~~~~~~TGDlg~~d~----------dG~l~~~gR~~d~i  383 (499)
T PLN03051        317 PCVGEVALAPPMLGASDRLLNADH-D-KVYY-KGMPMYGSKGMPLRRHGDIMKRTP----------GGYFCVQGRADDTM  383 (499)
T ss_pred             CcceEEEEecCcCCCCccccCCcc-c-ceee-ecCCccccCCcceeecCCeEEECC----------CCcEEEEeccCCEE
Confidence             489999999976  589998653 3 3332 33          689999999999          99999999999999


Q ss_pred             EeCCceeeccHHhHHHHhc-CcccceEEEEecCCC-----ceEEEE---ecCHHHHHHHHHHcCCCCCChhhcChHHHHH
Q 006530          535 VLSTGENVEPLELEEAALR-SSLIRQIVVIGQDQR-----RPGAII---VPDKEEVLMAAKRLSIVHADASELSKEKTIS  605 (641)
Q Consensus       535 ~~~~G~~v~p~~iE~~l~~-~p~V~~~~v~g~~~~-----~~~a~v---v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  605 (641)
                      +. +|++|+|.|||++|.+ ||+|.||+|+|.+++     .+.++|   +++++.               ...+.+++++
T Consensus       384 k~-~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~~~---------------~~~~~~~l~~  447 (499)
T PLN03051        384 NL-GGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKKGF---------------DQARPEALQK  447 (499)
T ss_pred             ee-CCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcceecccc---------------cccchHHHHH
Confidence            97 9999999999999996 999999999998763     455676   554321               1346678888


Q ss_pred             HHHHHHHhHhccCCCccccEEEecCCCCCCCCcc
Q 006530          606 LLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  639 (641)
Q Consensus       606 ~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l  639 (641)
                      +|++++.....+. +++.+|.++++.|.+.+||+
T Consensus       448 ~~~~~l~~~l~~~-~~~~~i~~v~~lP~t~~GKi  480 (499)
T PLN03051        448 KFQEAIQTNLNPL-FKVSRVKIVPELPRNASNKL  480 (499)
T ss_pred             HHHHHHHhhcCCc-cCCceEEEcCCCCCCCCccH
Confidence            8888776654332 26677999999999999997

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.1e-52  Score=468.17  Aligned_cols=489  Identities=26%  Similarity=0.390  Sum_probs=371.3

Q ss_pred             HHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEE
Q 006530           25 RVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRV-IGVKPEEKLSLFSDNSCRWLVADQGMLATGAINV  103 (641)
Q Consensus        25 ~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v  103 (641)
                      ....+..++++|+++|+...+   +++||.||.++++++|..|.+ .|+++|++|+++++|+++++++++||+++|++++
T Consensus        26 ~~~l~~~a~~~p~~~a~~~~~---~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v  102 (560)
T PRK08974         26 VDMFEQAVARYADQPAFINMG---EVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIVV  102 (560)
T ss_pred             HHHHHHHHHhCCCCceEEECC---ccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEe
Confidence            344455566778888887655   359999999999999999984 8999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCC-CCCCCc------------cC---C
Q 006530          104 VRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKS-SVAPDI------------VE---E  167 (641)
Q Consensus       104 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~------------~~---~  167 (641)
                      |++|..+.+.+.++++.++++.+++++ +....+.+.... ...+.++....... ......            .+   .
T Consensus       103 ~l~~~~~~~~~~~~l~~~~~~~ii~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (560)
T PRK08974        103 NVNPLYTPRELEHQLNDSGAKAIVIVS-NFAHTLEKVVFK-TPVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKYHL  180 (560)
T ss_pred             ccCccCCHHHHHHHHHhcCceEEEEec-cccHHHHHHhhh-cCcceEEEecccccccccccccccchhhhcccccccccC
Confidence            999999999999999999999999975 333333332221 12222222110000 000000            00   0


Q ss_pred             CCcccHHHHHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcC---CC
Q 006530          168 IPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP---AE  244 (641)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~---~~  244 (641)
                      .....+.+....+....            .......++++++++|||||||.||+|.++|+++...+......+.   ..
T Consensus       181 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~  248 (560)
T PRK08974        181 PDAISFRSALHKGRRMQ------------YVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHP  248 (560)
T ss_pred             CCcccHHHHhhccCCCC------------CCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCC
Confidence            00111222221111000            1112346789999999999999999999999999876654433222   34


Q ss_pred             CCCEEEEECChhhHHHHHH-hHhhhhcCeeEEec----chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHH
Q 006530          245 NGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAAR  319 (641)
Q Consensus       245 ~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~  319 (641)
                      .++.++..+|++|.+++.. .+..+..|+++++.    ++..++..++++++|.+.++|+++..+.......        
T Consensus       249 ~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~--------  320 (560)
T PRK08974        249 GKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQ--------  320 (560)
T ss_pred             CccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcc--------
Confidence            4678889999999998754 45567788876654    4667889999999999999999998886531100        


Q ss_pred             HHHHHHHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEee
Q 006530          320 RVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSG  399 (641)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~g  399 (641)
                                                                                         ...+.++|.+++|
T Consensus       321 -------------------------------------------------------------------~~~~~~lr~~~~g  333 (560)
T PRK08974        321 -------------------------------------------------------------------ELDFSSLKLSVGG  333 (560)
T ss_pred             -------------------------------------------------------------------cCCccceeEEEec
Confidence                                                                               0123345899999


Q ss_pred             cCCCChhHH-HHHHHcCCeeeeccccccccCeeeecCCCC-CcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecC
Q 006530          400 GGSLPMHID-LFYEAIGVKVQVGYGLTESSPVIAARRPTC-NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS  477 (641)
Q Consensus       400 G~~l~~~l~-~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~-~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~  477 (641)
                      |++++..+. .+.+.+|.++++.||+||++..++.+.... ..++++|.|+++++++|+++ ++..++.|+.|||+++|+
T Consensus       334 g~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~-~~~~~~~g~~Gel~v~g~  412 (560)
T PRK08974        334 GMAVQQAVAERWVKLTGQYLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPVPSTEIKLVDD-DGNEVPPGEPGELWVKGP  412 (560)
T ss_pred             CccCCHHHHHHHHHHhCCcEEeeecccccCceeeccCCCCcccCCccccCcCCCEEEEECC-CCCCCCCCCceEEEEecC
Confidence            999999884 455556999999999999987766554322 34678999999999999995 578899999999999999


Q ss_pred             cccccccCCchhhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCccc
Q 006530          478 QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLI  557 (641)
Q Consensus       478 ~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V  557 (641)
                      .++.||+++++.+...| .+|||+|||++++++          +|.++++||.+|+|++ +|.+++|.+||+.|.+||+|
T Consensus       413 ~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~----------~g~l~i~GR~~d~i~~-~G~~i~~~~IE~~l~~~~~v  480 (560)
T PRK08974        413 QVMLGYWQRPEATDEVI-KDGWLATGDIAVMDE----------EGFLRIVDRKKDMILV-SGFNVYPNEIEDVVMLHPKV  480 (560)
T ss_pred             CcchhhcCChhhhhhhh-hcCCcccCCEEEEcC----------CceEEEEecccceEEe-CCEEECHHHHHHHHHhCCCe
Confidence            99999999999998888 689999999999998          8999999999999998 89999999999999999999


Q ss_pred             ceEEEEecCCCc----eEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCC
Q 006530          558 RQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFT  633 (641)
Q Consensus       558 ~~~~v~g~~~~~----~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~  633 (641)
                      .+++|++.+++.    +.++++...                 ...+.++++++++++++.|.     .+.++.++++.|.
T Consensus       481 ~~~~v~~~~~~~~g~~~~~~v~~~~-----------------~~~~~~~l~~~l~~~l~~~~-----~P~~~~~~~~lP~  538 (560)
T PRK08974        481 LEVAAVGVPSEVSGEAVKIFVVKKD-----------------PSLTEEELITHCRRHLTGYK-----VPKLVEFRDELPK  538 (560)
T ss_pred             eEEEEEeeecCCcceEEEEEEECCC-----------------CCCCHHHHHHHHHhhccccc-----CCcEEEEhhhCCC
Confidence            999999987653    334444321                 23456789999999999888     7788999999999


Q ss_pred             CCCCccc
Q 006530          634 VNFLCLA  640 (641)
Q Consensus       634 ~~~~~l~  640 (641)
                      +.+||+.
T Consensus       539 t~~GK~~  545 (560)
T PRK08974        539 SNVGKIL  545 (560)
T ss_pred             CCCCcEe
Confidence            9999973

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=1.2e-52  Score=452.99  Aligned_cols=397  Identities=29%  Similarity=0.471  Sum_probs=315.8

Q ss_pred             hhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEEecCCC
Q 006530           29 RNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSR  108 (641)
Q Consensus        29 ~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v~l~~~  108 (641)
                      +++++++|+++|++.  ++.+++||+||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|++++|++|.
T Consensus         2 ~~~a~~~pd~~a~~~--~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~l~~~   79 (417)
T PF00501_consen    2 ERQAQRYPDRIALID--DEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVPLDPS   79 (417)
T ss_dssp             HHHHHHSTTSEEEEE--TTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEEEETT
T ss_pred             hhHHhhCCCceEEEE--CCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeecccccccccccccccc
Confidence            466778899999888  445789999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHhcCceEEEe----cChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhhh
Q 006530          109 SSSEELLHIYNHSESVALAV----ENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESR  184 (641)
Q Consensus       109 ~~~~~l~~~l~~~~~~~li~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (641)
                      ++.+++.++++.++++++|+    +... ...+............++.++....            .....+........
T Consensus        80 ~~~~~~~~~l~~~~~~~ii~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~  146 (417)
T PF00501_consen   80 LSEDELRHILRQSGPKVIITSEAVDSEP-LKKLKSIFKQEDPSSSIIILDRDDL------------PKKEALKSASLSDE  146 (417)
T ss_dssp             SSHHHHHHHHHHHTESEEEECHHHSCHH-HHHHHHHHTTSTTTEEEEEESHSSC------------TTCHHHHHHHHCHC
T ss_pred             cccccccccccccceeEEEEeccccccc-cccchhhhccccccccccccccccc------------cccccccccccccc
Confidence            99999999999999999996    4323 4455555544444444444432211            11111111111100


Q ss_pred             cccCCCchhhcccccCC-CCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHh--hhcCCCCCCEEEEECChhhHHHH
Q 006530          185 KAFSDSNDARKHYKYET-IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY--DIVPAENGDKFLSMLPPWHVYER  261 (641)
Q Consensus       185 ~~~~~~~~~~~~~~~~~-~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~--~~~~~~~~d~~l~~~pl~~~~g~  261 (641)
                      .            . .. ..++++++++|||||||.||+|.++|+++++.+..+.  ...+++  |++++++|++|++++
T Consensus       147 ~------------~-~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~  211 (417)
T PF00501_consen  147 P------------Q-SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGL  211 (417)
T ss_dssp             S------------H-STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHH
T ss_pred             c------------c-cCCCCccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeeccccccccc
Confidence            0            0 00 0469999999999999999999999999999888764  223333  699999999999999


Q ss_pred             -HHhHhhhhcCeeEEecc------hHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHH
Q 006530          262 -ACGYFIFSRGIELMYTA------VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYT  334 (641)
Q Consensus       262 -~~~~~~l~~G~~~v~~~------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (641)
                       ...+.++..|+++++.+      +..+++.++++++|++.++|.++..+.+..+.. .                     
T Consensus       212 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~-~---------------------  269 (417)
T PF00501_consen  212 ISALLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEK-T---------------------  269 (417)
T ss_dssp             HHHHHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTT-H---------------------
T ss_pred             cccccccccccccccccccccccccccchhccccccccccccccccccccccccccc-c---------------------
Confidence             56788899999999975      244689999999999999999999987621111 0                     


Q ss_pred             HHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHH
Q 006530          335 AFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEA  413 (641)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~  413 (641)
                                                                       ......++++|.+++||+++++++ +++.+.
T Consensus       270 -------------------------------------------------~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~  300 (417)
T PF00501_consen  270 -------------------------------------------------KISKKDLSSLRTVISGGEPLPPDLLRRLRKA  300 (417)
T ss_dssp             -------------------------------------------------HGTTTTGTT-SEEEEESST-CHHHHHHHHHH
T ss_pred             -------------------------------------------------cccccccccccccccccccCChhhccccccc
Confidence                                                             000125566799999999999998 555566


Q ss_pred             cCC-eeeeccccccccCeeeecCCC--CCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhh
Q 006530          414 IGV-KVQVGYGLTESSPVIAARRPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSAT  490 (641)
Q Consensus       414 ~~~-~v~~~yG~tE~~~~~~~~~~~--~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~  490 (641)
                      ++. +|++.||+||++.+++.....  ...++++|.|+++++++|+|++++++++.|+.|||+++|+.++.||+++++.+
T Consensus       301 ~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gei~i~~~~~~~gy~~~~~~~  380 (417)
T PF00501_consen  301 FGNAPIINLYGSTETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPPGEPGEIVIRGPNVFSGYYNDPELT  380 (417)
T ss_dssp             HTTSEEEEEEEEGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBESTTSEEEEEEESTTSBSEETTBHHHH
T ss_pred             cccccceecccccccceeeecccccccccccccccccccccccccccccccccccccccccccccCCccceeeecccccc
Confidence            676 999999999999988766322  24678899999999999999888999999999999999999999999999999


Q ss_pred             hhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEe
Q 006530          491 KQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVL  536 (641)
Q Consensus       491 ~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~  536 (641)
                      .+.|.++|||+|||+|++++          ||.++++||.||+|++
T Consensus       381 ~~~~~~~~~~~TGD~g~~d~----------~G~~~~~GR~~~~i~~  416 (417)
T PF00501_consen  381 AEAFIDDGWYRTGDLGRLDE----------DGYLYILGRSDDMIKV  416 (417)
T ss_dssp             HHHEETTSEEEEEEEEEEET----------TSEEEEEEEGSCEEEE
T ss_pred             ccccccccceecceEEEECC----------CCeEEEEEeeCCEEEe
Confidence            99997668999999999999          8999999999999986

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.8e-52  Score=466.42  Aligned_cols=475  Identities=21%  Similarity=0.274  Sum_probs=342.1

Q ss_pred             HHHhhhhhhhhhhhhhcccC------CceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcC
Q 006530           26 VFTRNCVDAVATRIRISRRN------HRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATG   99 (641)
Q Consensus        26 ~~~~~~~~~~~~~~a~~~~~------~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G   99 (641)
                      ..+++++..+|+++|+.+.+      +..+++||+||.++++++|++|.+.| .+||+|+++++|+++++++++||+++|
T Consensus         5 ~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~~~~G   83 (578)
T PRK05850          5 SLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGALQAG   83 (578)
T ss_pred             HHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHHHHcC
Confidence            34455566778888876432      33578999999999999999999999 689999999999999999999999999


Q ss_pred             CEEEecCC---CCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccc--cccEEEEEeCCCCCCCCCccCCCCcccHH
Q 006530          100 AINVVRGS---RSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKA--AMRFIILLWGKKSSVAPDIVEEIPVFSYD  174 (641)
Q Consensus       100 ~~~v~l~~---~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  174 (641)
                      ++++|+++   ..+.+++.++++.++++++++++ .....+.+......  ....++..+                    
T Consensus        84 ~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------------------  142 (578)
T PRK05850         84 LIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTS-AVVDDVTEYVAPQPGQSAPPVIEVD--------------------  142 (578)
T ss_pred             ceEEecCCCCccchHHHHHHHHHhcCCCEEEEcH-HHHHHHHHHHhhcccccccceEeec--------------------
Confidence            99999997   45788999999999999999985 44444433221111  111111110                    


Q ss_pred             HHHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhh-cC-----CCCCCE
Q 006530          175 EIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI-VP-----AENGDK  248 (641)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~-~~-----~~~~d~  248 (641)
                      . ........            .......++++++++|||||||.||||.+||+++++.+...... +.     ..++++
T Consensus       143 ~-~~~~~~~~------------~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~  209 (578)
T PRK05850        143 L-LDLDSPRG------------SDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTT  209 (578)
T ss_pred             c-cccccCCc------------cccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcce
Confidence            0 00000000            01123457899999999999999999999999998877655432 22     355789


Q ss_pred             EEEECChhhHHHHHH-hHhhhhcCeeEEecc-------hHHHHHHHhhhCCeEEEeCcHHHHHHHHH-HHHHHhhccHHH
Q 006530          249 FLSMLPPWHVYERAC-GYFIFSRGIELMYTA-------VRNLKDDLQRYQPHYMISVPLVYETLYSG-IQKQIFTSSAAR  319 (641)
Q Consensus       249 ~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~-------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~~~  319 (641)
                      +++++|++|.+|+.. .+.++..|+++++.+       +..+...+.+++++++ .+|.++..+... ......      
T Consensus       210 ~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~------  282 (578)
T PRK05850        210 VVSWLPFYHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDM------  282 (578)
T ss_pred             EEEECCCCCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhh------
Confidence            999999999999875 566799999988853       5678889999999855 566654333221 100000      


Q ss_pred             HHHHHHHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEee
Q 006530          320 RVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSG  399 (641)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~g  399 (641)
                                                                                        ....++++|.+++|
T Consensus       283 ------------------------------------------------------------------~~~~~~~lr~~~~g  296 (578)
T PRK05850        283 ------------------------------------------------------------------AGLDLGGVLGIISG  296 (578)
T ss_pred             ------------------------------------------------------------------cCcchhhheeEEEC
Confidence                                                                              00123345999999


Q ss_pred             cCCCChhH-HHHHHHc---C---CeeeeccccccccCeeeecCCCC-------------------------CcccccccC
Q 006530          400 GGSLPMHI-DLFYEAI---G---VKVQVGYGLTESSPVIAARRPTC-------------------------NVLGSVGHP  447 (641)
Q Consensus       400 G~~l~~~l-~~~~~~~---~---~~v~~~yG~tE~~~~~~~~~~~~-------------------------~~~~~~G~~  447 (641)
                      |+++++.+ .++.+.+   +   ..+++.||+||++..+.......                         ....++|.|
T Consensus       297 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p  376 (578)
T PRK05850        297 SERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSP  376 (578)
T ss_pred             cCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCC
Confidence            99999987 5555554   2   36899999999875544322110                         001234554


Q ss_pred             cCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccC-----------CCCccccCceeEEcCCCCCCC
Q 006530          448 INHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD-----------EDGWLNTGDIGWIAPHHSRGR  516 (641)
Q Consensus       448 ~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~-----------~~g~~~TGDl~~~~~~~~~~~  516 (641)
                      . +.+++++|++++.+++.|+.|||+++|+.++.||+++++.+.+.|.           .++||+|||+|+++       
T Consensus       377 ~-~~~~~ivd~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-------  448 (578)
T PRK05850        377 R-SPTVRIVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-------  448 (578)
T ss_pred             C-CCEEEEEcCCCCcCCCCCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-------
Confidence            3 5789999987788999999999999999999999999999998884           25799999999886       


Q ss_pred             ccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC---ceEEEEecCHHHHHHHHHHcCCCCC
Q 006530          517 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR---RPGAIIVPDKEEVLMAAKRLSIVHA  593 (641)
Q Consensus       517 ~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~---~~~a~vv~~~~~~~~~~~~~~~~~~  593 (641)
                          +|.+++.||++|+|++ +|++|+|.|||++|.+||.+ +++|++.+++   .++++|+++.+.             
T Consensus       449 ----~G~l~~~GR~~d~i~~-~G~~i~p~eIE~~l~~~~~~-~~~v~~v~~~~~~~~~a~v~~~~~~-------------  509 (578)
T PRK05850        449 ----EGELFIVGRIKDLLIV-DGRNHYPDDIEATIQEITGG-RVAAISVPDDGTEKLVAIIELKKRG-------------  509 (578)
T ss_pred             ----CCEEEEEcccccEEEE-CCeecCHHHHHHHHHHhcCC-cEEEEEecCCCceEEEEEEEecccc-------------
Confidence                4999999999999997 99999999999999999996 5778877653   577888876431             


Q ss_pred             Chhhc----ChHHHHHHHHHHHHhHhccCCCccccEEEec--CCCCCCCCcc
Q 006530          594 DASEL----SKEKTISLLYGELRKWTSKCSFQIGPIHVVD--EPFTVNFLCL  639 (641)
Q Consensus       594 ~~~~~----~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~--~~~~~~~~~l  639 (641)
                       ..+.    ...++++.+.+.+..+.   ..++..+.+++  +.|.+.+||+
T Consensus       510 -~~~~~~~~~~~~l~~~v~~~l~~~~---~~~~~~~~~~~~~~iP~t~~GKi  557 (578)
T PRK05850        510 -DSDEEAMDRLRTVKREVTSAISKSH---GLSVADLVLVAPGSIPITTSGKI  557 (578)
T ss_pred             -CcchhhhhhHHHHHHHHHHHHHHHh---CCCceEEEEeCCCCcCCCCCchH
Confidence             0011    12234444444443332   23566777775  6799999997

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=1.5e-51  Score=446.99  Aligned_cols=426  Identities=24%  Similarity=0.319  Sum_probs=351.3

Q ss_pred             eHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCceEEEecCh
Q 006530           52 CESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVALAVENP  131 (641)
Q Consensus        52 Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~  131 (641)
                      ||+||.++++++|+.|.+.|+++||+|+|+++|+++++++++||+++|++++++++.++.+.+..+++.++++.+++++.
T Consensus         1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   80 (436)
T TIGR01923         1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL   80 (436)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999863


Q ss_pred             hhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEE
Q 006530          132 EFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYV  211 (641)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~  211 (641)
                       .....             +                 ....+.++........            ........+++++++
T Consensus        81 -~~~~~-------------~-----------------~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~i~  117 (436)
T TIGR01923        81 -LEEKD-------------F-----------------QADSLDRIEAAGRYET------------SLSASFNMDQIATLM  117 (436)
T ss_pred             -ccccc-------------e-----------------eecchHhhhhcccccc------------cccccCCcCceEEEE
Confidence             11000             0                 0011111111110000            011234578899999


Q ss_pred             eCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHHHhHhhhhcCeeEEecc-hHHHHHHHhhhC
Q 006530          212 YTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA-VRNLKDDLQRYQ  290 (641)
Q Consensus       212 ~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~-~~~~~~~i~~~~  290 (641)
                      |||||||.||+|.++|+++...+......+++.++|+++..+|++|+.++...+.++..|+++++.+ ...+++.+++++
T Consensus       118 ~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~l~~~~  197 (436)
T TIGR01923       118 FTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKFNQLLEMIANER  197 (436)
T ss_pred             eCCCCCCCCcEEEEehHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchHHHHHHHHHHhC
Confidence            9999999999999999999999888888899999999999999999999887888899999999874 358889999999


Q ss_pred             CeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhh
Q 006530          291 PHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAI  370 (641)
Q Consensus       291 ~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (641)
                      +|++.++|+++..+.+...                                                             
T Consensus       198 ~t~~~~~P~~l~~l~~~~~-------------------------------------------------------------  216 (436)
T TIGR01923       198 VTHISLVPTQLNRLLDEGG-------------------------------------------------------------  216 (436)
T ss_pred             CeEEEeHHHHHHHHHhCcC-------------------------------------------------------------
Confidence            9999999999987755210                                                             


Q ss_pred             hhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhHHHHHHHcCCeeeeccccccccCeeeecCCCC-CcccccccCcC
Q 006530          371 LWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTC-NVLGSVGHPIN  449 (641)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~-~~~~~~G~~~~  449 (641)
                                        ...++|.+++||+++++.+.+.....+..+++.||+||++.......... ....++|.|++
T Consensus       217 ------------------~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~  278 (436)
T TIGR01923       217 ------------------HNENLRKILLGGSAIPAPLIEEAQQYGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLA  278 (436)
T ss_pred             ------------------CCCceEEEEECCCCCCHHHHHHHHHhCCceeeEecCCccchhccCcCccccccccCCCccCC
Confidence                              00234899999999999986666677999999999999976554333221 22224899999


Q ss_pred             CcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEecc
Q 006530          450 HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR  529 (641)
Q Consensus       450 ~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR  529 (641)
                      ++++++...+.      ++.|||+++|+.++.||++++..+...+ .++||+|||++++++          ||.+++.||
T Consensus       279 ~~~~~i~~~~~------~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~----------dg~~~~~GR  341 (436)
T TIGR01923       279 GREIKIKVDNK------EGHGEIMVKGANLMKGYLYQGELTPAFE-QQGWFNTGDIGELDG----------EGFLYVLGR  341 (436)
T ss_pred             CcEEEEEeCCC------CCceEEEEECCccchhhCCChhhhhhhh-cCCCeeccceEEEcC----------CCCEEEecc
Confidence            99999844222      2679999999999999999887776655 579999999999999          999999999


Q ss_pred             ccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHH
Q 006530          530 AKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTIS  605 (641)
Q Consensus       530 ~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  605 (641)
                      .+|+|++ +|++|+|.+||..+.++|.|.+++|++.+++    .+.++|+++.                  +.+.+++.+
T Consensus       342 ~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~------------------~~~~~~l~~  402 (436)
T TIGR01923       342 RDDLIIS-GGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSES------------------DISQAKLIA  402 (436)
T ss_pred             ccCeEEe-CCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEEECC------------------CCCHHHHHH
Confidence            9999997 9999999999999999999999999998654    3557777652                  356788999


Q ss_pred             HHHHHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          606 LLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       606 ~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                      ++++.++.|+     .|.+|.++++.|.+.+||+.
T Consensus       403 ~l~~~l~~~~-----~p~~i~~~~~iP~t~~GK~~  432 (436)
T TIGR01923       403 YLTEKLAKYK-----VPIAFEKLDELPYNASGKIL  432 (436)
T ss_pred             HHHHhhhCCC-----CCeEEEEecCCCCCCCCcee
Confidence            9999999998     77789999999999999973

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.3e-52  Score=489.12  Aligned_cols=475  Identities=14%  Similarity=0.146  Sum_probs=350.0

Q ss_pred             hHHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q 006530           23 GFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN  102 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~  102 (641)
                      .+..++++++.+.|+++|+++++   +++||+||.++++++|++|.+.|+++||+|+|+++|+++++++++||+++|+++
T Consensus       448 sl~~ll~~~a~~~pd~~Al~~~~---~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav~  524 (994)
T PRK07868        448 SLGRIIAEQARDAPKGEFLLFDG---RVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAVA  524 (994)
T ss_pred             cHHHHHHHHHHHCCCCeEEEeCC---ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEE
Confidence            45666777888899999998765   359999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhh
Q 006530          103 VVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRE  182 (641)
Q Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (641)
                      +|++|.   +++.++++.++++++|++. .....+.+.      ...++.+++.... ............++++..   .
T Consensus       525 vpl~p~---~~l~~il~~s~~~~li~~~-~~~~~~~~~------~~~iiv~~~~~~~-~~~~~~~~~~~~~~~~~~---~  590 (994)
T PRK07868        525 VLMPPD---TDLAAAVRLGGVTEIITDP-TNLEAARQL------PGRVLVLGGGESR-DLDLPDDADVIDMEKIDP---D  590 (994)
T ss_pred             EEeCCc---hhHHHHHhccCCeEEEECh-HHHHHHHhc------CceEEEecCCccc-cccCCcchhhhhhhhcCc---c
Confidence            999985   6799999999999999985 444433221      1334433321100 000000000011111100   0


Q ss_pred             hhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHH
Q 006530          183 SRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERA  262 (641)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~  262 (641)
                      ... . ..     ........++|+++|+|| ||||.||++.++|.+...........+++.++|++++.+|++|++++.
T Consensus       591 ~~~-~-~~-----~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl~  662 (994)
T PRK07868        591 AVE-L-PG-----WYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLL  662 (994)
T ss_pred             ccc-C-Cc-----ccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHHH
Confidence            000 0 00     000112236899999998 577777777788877655444445567888999999999999999998


Q ss_pred             HhHhh-hhcCeeEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHh
Q 006530          263 CGYFI-FSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKR  338 (641)
Q Consensus       263 ~~~~~-l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (641)
                      ..+.+ +..|+++++.   ++..+++.++++++|++..+|+++..+.......                           
T Consensus       663 ~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~---------------------------  715 (994)
T PRK07868        663 VSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFV---------------------------  715 (994)
T ss_pred             HHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCc---------------------------
Confidence            76555 5666666663   5889999999999999999999998876521000                           


Q ss_pred             HhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHcC-C
Q 006530          339 IYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG-V  416 (641)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~~-~  416 (641)
                                                                      ...++++|.++ | +.+++.+ +++.+.++ .
T Consensus       716 ------------------------------------------------~~~~~slr~~~-g-~gl~~~l~~~~~~~~~~~  745 (994)
T PRK07868        716 ------------------------------------------------LHGNHPVRLFI-G-SGMPTGLWERVVEAFAPA  745 (994)
T ss_pred             ------------------------------------------------cCCCCceEEEe-c-CCCCHHHHHHHHHHhCch
Confidence                                                            01234457665 3 3477776 66677775 7


Q ss_pred             eeeeccccccccCeeeecCCCCCcccccccCcCCc-EEEEe--eC--------CCC--ccCCCCCCceEEEecCcccccc
Q 006530          417 KVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHT-EIKIV--DA--------ETN--EVLPAGSKGIVKVRGSQVMQGY  483 (641)
Q Consensus       417 ~v~~~yG~tE~~~~~~~~~~~~~~~~~~G~~~~~~-~v~i~--d~--------~~~--~~~~~g~~Gel~v~g~~~~~gY  483 (641)
                      ++++.||+||++.... +. ...+++++|+|++|+ +++|.  |+        +++  +.++.|+.|||+++++..    
T Consensus       746 ~l~~~YG~TE~~~~~~-~~-~~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~----  819 (994)
T PRK07868        746 HVVEFFATTDGQAVLA-NV-SGAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARGP----  819 (994)
T ss_pred             heeeeeeccccccccc-cc-CCCCCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCCC----
Confidence            8999999999875443 22 234568999999997 67664  21        334  567889999999998753    


Q ss_pred             cCCchhh--hhccC-CCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceE
Q 006530          484 FKNPSAT--KQALD-EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQI  560 (641)
Q Consensus       484 ~~~~~~~--~~~~~-~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~  560 (641)
                      + +|+.+  ...|. .+|||+|||+|++|+          ||+|+|+||+||+|++ +|.+|+|.|||++|.+||+|.+|
T Consensus       820 ~-~p~~t~~~~~~~~~dgw~~TGDlg~~d~----------dG~l~~~GR~dd~Ik~-~G~~I~p~EIE~~L~~hp~V~~a  887 (994)
T PRK07868        820 I-DPTASVKRGVFAPADTWISTEYLFRRDD----------DGDYWLVDRRGSVIRT-ARGPVYTEPVTDALGRIGGVDLA  887 (994)
T ss_pred             C-ChhhhhHhcccccCCEEEeccceEEEcC----------CCCEEEeccCCCEEEe-CCceEcHHHHHHHHhcCCCeeEE
Confidence            2 34332  22242 489999999999999          9999999999999997 88899999999999999999999


Q ss_pred             EEEecCCC---ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCC
Q 006530          561 VVIGQDQR---RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFL  637 (641)
Q Consensus       561 ~v~g~~~~---~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~  637 (641)
                      +|++.+++   .+.++|+++++                ...+.++|++++++ ++.|+     .|+.|+++++.|.+.||
T Consensus       888 aVvg~~d~~~~~~~a~Vv~~~~----------------~~~~~~~L~~~l~~-l~~y~-----vP~~i~~v~~lP~T~sG  945 (994)
T PRK07868        888 VTYGVEVGGRQLAVAAVTLRPG----------------AAITAADLTEALAS-LPVGL-----GPDIVHVVPEIPLSATY  945 (994)
T ss_pred             EEEeecCCCCceEEEEEEeCCC----------------CcCCHHHHHHHHHh-CCCCc-----CCeEEEEeCCCCCCccc
Confidence            99998654   57788887643                34677899999985 88888     78899999999999999


Q ss_pred             cc
Q 006530          638 CL  639 (641)
Q Consensus       638 ~l  639 (641)
                      |+
T Consensus       946 Ki  947 (994)
T PRK07868        946 RP  947 (994)
T ss_pred             cE
Confidence            86

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=6.8e-52  Score=422.84  Aligned_cols=490  Identities=23%  Similarity=0.262  Sum_probs=365.8

Q ss_pred             hHHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q 006530           23 GFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN  102 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~  102 (641)
                      .+.....+++.++|+|.+++..+. .+++||+|++++++++|+.|...|++.||.||++|+|++|++.++|+++++|++.
T Consensus        78 ti~~~F~~~vrr~p~k~aii~~~~-~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaKlGv~t  156 (649)
T KOG1179|consen   78 TIAELFLSQVRRQPDKPAIIYEGP-FQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAKLGVIT  156 (649)
T ss_pred             cHHHHHHHHHHhCCCccEEEEeCC-CceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHhhCcee
Confidence            344556667788899999887764 3669999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhh
Q 006530          103 VVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRE  182 (641)
Q Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (641)
                      ..||++...+.|.|.++.+++++++++ +++.+.+.++.+.......-+...+..+.       ..+..++.+.++....
T Consensus       157 A~iNtNlR~~~LlHsi~~s~aralv~~-~el~~~~~e~~~~l~~~~i~~~~~~~~~~-------~~g~~~L~~~l~~~~~  228 (649)
T KOG1179|consen  157 AFINTNLRGEPLLHSITVSGARALVVG-PELLNALEEILPLLIKNGIHVFSLGPTSV-------PDGIESLLAKLSAAPK  228 (649)
T ss_pred             eeeccccccchhhhhhhhcCceEEEEC-HHHHHHHHhcchhhhhccceEEecCCCCC-------CchHHHHHHhhccccc
Confidence            999999999999999999999999999 47877777774433322222222221111       1122333333333332


Q ss_pred             hhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHH
Q 006530          183 SRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERA  262 (641)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~  262 (641)
                      .+.+.         ......+-.++++++|||||||.||+.+++|.........+...++++++|+++.++|++|+.|.+
T Consensus       229 ~~vp~---------~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~i  299 (649)
T KOG1179|consen  229 HPVPV---------STRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAGI  299 (649)
T ss_pred             CCCCc---------ccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHHH
Confidence            22110         123455677899999999999999999999999998888788899999999999999999999998


Q ss_pred             HhHh-hhhcCeeEEe---cchHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHh
Q 006530          263 CGYF-IFSRGIELMY---TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKR  338 (641)
Q Consensus       263 ~~~~-~l~~G~~~v~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (641)
                      .++. ++..|+++|+   ++...|+++..++++|++..+-.+.+.|++.......                         
T Consensus       300 lGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~e-------------------------  354 (649)
T KOG1179|consen  300 LGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEE-------------------------  354 (649)
T ss_pred             HHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhh-------------------------
Confidence            8655 4899999999   6899999999999999988766666665543221100                         


Q ss_pred             HhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCce-eEEeecCCCChhHHHHHHHcCC-
Q 006530          339 IYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISK-AGVSGGGSLPMHIDLFYEAIGV-  416 (641)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r-~i~~gG~~l~~~l~~~~~~~~~-  416 (641)
                                                                          ...+ .+..|.+.-++..++|.+.||. 
T Consensus       355 ----------------------------------------------------r~HkVRla~GNGLR~diW~~Fv~RFg~~  382 (649)
T KOG1179|consen  355 ----------------------------------------------------RQHKVRLAYGNGLRPDIWQQFVKRFGII  382 (649)
T ss_pred             ----------------------------------------------------cCceEEEEecCCCCchHHHHHHHHcCCC
Confidence                                                                0002 3455555556666999999976 


Q ss_pred             eeeeccccccccCeeeecCCCCCcccccc---cCcCCcEEEEeeCCCCc----------cCCCCCCceEEEe--cCc---
Q 006530          417 KVQVGYGLTESSPVIAARRPTCNVLGSVG---HPINHTEIKIVDAETNE----------VLPAGSKGIVKVR--GSQ---  478 (641)
Q Consensus       417 ~v~~~yG~tE~~~~~~~~~~~~~~~~~~G---~~~~~~~v~i~d~~~~~----------~~~~g~~Gel~v~--g~~---  478 (641)
                      +|.+.||+||............+..|-+.   +-+-.+++.-+|+++++          +|++|++|.++-+  ...   
T Consensus       383 ~IgE~YgaTEgn~~~~N~d~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~  462 (649)
T KOG1179|consen  383 KIGEFYGATEGNSNLVNYDGRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLR  462 (649)
T ss_pred             eEEEEeccccCcceeeeecCccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchh
Confidence            59999999998755543322222222111   11222344444555553          5678999976543  223   


Q ss_pred             ccccccCCchhhhhcc------CCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHh
Q 006530          479 VMQGYFKNPSATKQAL------DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAAL  552 (641)
Q Consensus       479 ~~~gY~~~~~~~~~~~------~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~  552 (641)
                      -+.||.++.+.+.+..      .+|-||+|||+-.+|+          .|+++|.+|..|++.. +||||+..|+|.+|.
T Consensus       463 ~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~----------~GylYF~DRtGDTFRW-KGENVsTtEVe~~l~  531 (649)
T KOG1179|consen  463 SFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADE----------LGYLYFKDRTGDTFRW-KGENVSTTEVEDVLS  531 (649)
T ss_pred             hhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEec----------CCcEEEeccCCCceee-cCCcccHHHHHHHHh
Confidence            3899999877776553      2366999999999999          8999999999999999 999999999999999


Q ss_pred             cCcccceEEEEecC----CCceE-EEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEE
Q 006530          553 RSSLIRQIVVIGQD----QRRPG-AIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHV  627 (641)
Q Consensus       553 ~~p~V~~~~v~g~~----~~~~~-a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~  627 (641)
                      ...+++||.|+|+.    +.+.| |.|+.+++                .+.+.+++-.++++.|+.|.+|.     -+.+
T Consensus       532 ~~~~~~dv~VYGV~VP~~EGRaGMAaI~~~p~----------------~~~d~~~l~~~l~~~LP~YA~P~-----FlRl  590 (649)
T KOG1179|consen  532 ALDFLQDVNVYGVTVPGYEGRAGMAAIVLDPT----------------TEKDLEKLYQHLRENLPSYARPR-----FLRL  590 (649)
T ss_pred             hhccccceeEEEEecCCccCccceEEEEecCc----------------ccchHHHHHHHHHhhCccccchH-----HHHH
Confidence            99999999999963    23455 55555543                56889999999999999999654     3555


Q ss_pred             ecCCCCCCCCcc
Q 006530          628 VDEPFTVNFLCL  639 (641)
Q Consensus       628 ~~~~~~~~~~~l  639 (641)
                      .++...+++-||
T Consensus       591 ~~~i~~TgTFKl  602 (649)
T KOG1179|consen  591 QDEIEKTGTFKL  602 (649)
T ss_pred             Hhhhhcccchhh
Confidence            555555555443

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1e-50  Score=453.23  Aligned_cols=467  Identities=21%  Similarity=0.292  Sum_probs=349.9

Q ss_pred             hhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEEecCCCCCH
Q 006530           32 VDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSS  111 (641)
Q Consensus        32 ~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v~l~~~~~~  111 (641)
                      +...|+.+++.+.++ .+.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|++++++++..+.
T Consensus        12 ~~~~~~~~~~~~~~~-~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~~~l~~~~~~   90 (545)
T PRK07768         12 ARTSPRGMVTGEPDA-PVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLTMLHQPTPR   90 (545)
T ss_pred             hhCCCcceEEecCCC-ceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCccccccCCCCCc
Confidence            334577766655554 4779999999999999999999999999999999999999999999999999999999988775


Q ss_pred             HHH-------HHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhhh
Q 006530          112 EEL-------LHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESR  184 (641)
Q Consensus       112 ~~l-------~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (641)
                      +++       .++++.++++.+++++. ....+... ...                      .....+++++.....   
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~-~~~----------------------~~~~~~~~~l~~~~~---  143 (545)
T PRK07768         91 TDLAVWAEDTLRVIGMIGAKAVVVGEP-FLAAAPVL-EEK----------------------GIRVLTVADLLAADP---  143 (545)
T ss_pred             chhHHHHHHHHHHHHhCCCCEEEecch-hhhhhhhh-ccc----------------------CCceeehhhhcccCC---
Confidence            544       45677789999999852 22222111 000                      112244555443211   


Q ss_pred             cccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCC-CEEEEECChhhHHHHHH
Q 006530          185 KAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENG-DKFLSMLPPWHVYERAC  263 (641)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~-d~~l~~~pl~~~~g~~~  263 (641)
                                  .......++++++++|||||||.||+|.++|+++...+......+++.++ |++++.+|++|..++..
T Consensus       144 ------------~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~  211 (545)
T PRK07768        144 ------------IDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVG  211 (545)
T ss_pred             ------------CCcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchHHHH
Confidence                        01123467999999999999999999999999999988888878888776 89999999999999875


Q ss_pred             -hHhhhhcCeeEEecc-------hHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHH
Q 006530          264 -GYFIFSRGIELMYTA-------VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTA  335 (641)
Q Consensus       264 -~~~~l~~G~~~v~~~-------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (641)
                       .+.++..|+++++.+       +..+...+++++++++...|.++..+..........                     
T Consensus       212 ~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------------------  270 (545)
T PRK07768        212 FLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKP---------------------  270 (545)
T ss_pred             HHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccc---------------------
Confidence             445688999988753       456778899999999887777776554432111000                     


Q ss_pred             HHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhHHHHHHH--
Q 006530          336 FKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEA--  413 (641)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l~~~~~~--  413 (641)
                                                                        ...++.++|.++.+|+++++.+.+.+..  
T Consensus       271 --------------------------------------------------~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~  300 (545)
T PRK07768        271 --------------------------------------------------GAFDLSSLRFALNGAEPIDPADVEDLLDAG  300 (545)
T ss_pred             --------------------------------------------------cCCCchheeeEEeccCCCCHHHHHHHHHHH
Confidence                                                              0022344599999999999987444432  


Q ss_pred             --cCC---eeeeccccccccCeeeecCCC--------------------------CCcccccccCcCCcEEEEeeCCCCc
Q 006530          414 --IGV---KVQVGYGLTESSPVIAARRPT--------------------------CNVLGSVGHPINHTEIKIVDAETNE  462 (641)
Q Consensus       414 --~~~---~v~~~yG~tE~~~~~~~~~~~--------------------------~~~~~~~G~~~~~~~v~i~d~~~~~  462 (641)
                        +|.   .+++.||+||++..+......                          ...++++|.|.++++++|++ ++++
T Consensus       301 ~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~  379 (545)
T PRK07768        301 ARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQ  379 (545)
T ss_pred             HhcCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCC
Confidence              454   499999999998655433221                          12346899999999999999 5678


Q ss_pred             cCCCCCCceEEEecCcccccccCCchhhhhccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceee
Q 006530          463 VLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENV  542 (641)
Q Consensus       463 ~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v  542 (641)
                      +++.|+.|||+++|+.++.||++++... ..++.+|||+|||++++++          +|.++++||++|+|++ +|++|
T Consensus       380 ~~~~g~~Gel~v~~~~~~~gy~~~~~~~-~~~~~~g~~~TGDl~~~~~----------~g~l~~~GR~~d~i~~-~G~~v  447 (545)
T PRK07768        380 VLPPRGVGVIELRGESVTPGYLTMDGFI-PAQDADGWLDTGDLGYLTE----------EGEVVVCGRVKDVIIM-AGRNI  447 (545)
T ss_pred             CCCCCCEEEEEEccCcccccccCCCCCc-ccccCCCeeeccceEEEec----------CCEEEEEccccceEEE-CCEec
Confidence            9999999999999999999999865443 3344688999999999999          8999999999999998 99999


Q ss_pred             ccHHhHHHHhcCcccceEEEEecC--CC----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhc
Q 006530          543 EPLELEEAALRSSLIRQIVVIGQD--QR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTS  616 (641)
Q Consensus       543 ~p~~iE~~l~~~p~V~~~~v~g~~--~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~  616 (641)
                      +|.+||+.+.+||+|.+++|++.+  +.    .+.+++..+..               .......++.+++++.+.....
T Consensus       448 ~~~eiE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~~v~~~~~---------------~~~~~~~~l~~~~~~~l~~~~~  512 (545)
T PRK07768        448 YPTDIERAAARVEGVRPGNAVAVRLDAGHSREGFAVAVESNAF---------------EDPAEVRRIRHQVAHEVVAEVG  512 (545)
T ss_pred             CHHHHHHHHHhCcccccceEEEEEecCCCCceEEEEEEEeccc---------------ccHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999998877642  22    33344433221               0112234566777777766532


Q ss_pred             cCCCccccEEEec--CCCCCCCCccc
Q 006530          617 KCSFQIGPIHVVD--EPFTVNFLCLA  640 (641)
Q Consensus       617 ~~~~~~~~i~~~~--~~~~~~~~~l~  640 (641)
                      .   +++++.+++  ..|.+.+||+.
T Consensus       513 ~---~p~~v~~v~~~~lP~t~~GKi~  535 (545)
T PRK07768        513 V---RPRNVVVLGPGSIPKTPSGKLR  535 (545)
T ss_pred             C---CccEEEEeCCCcCCCCCchhHH
Confidence            2   678898987  78889999973

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-49  Score=428.93  Aligned_cols=389  Identities=18%  Similarity=0.212  Sum_probs=327.2

Q ss_pred             EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCceEEEe
Q 006530           49 RVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVALAV  128 (641)
Q Consensus        49 ~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~  128 (641)
                      +++||+||.++++++|..|. .|+++|++|+++++|+++++++++|++++|++++|+++..+.+.+..+++.++++.+++
T Consensus         7 ~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~   85 (414)
T PRK08308          7 EEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLY   85 (414)
T ss_pred             ceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEe
Confidence            35999999999999999985 68999999999999999999999999999999999999999999999999999999999


Q ss_pred             cChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhhhcccCCCchhhcccccCCCCCCCEE
Q 006530          129 ENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIA  208 (641)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  208 (641)
                      ++....                .                   ..                          .....+++++
T Consensus        86 ~~~~~~----------------~-------------------~~--------------------------~~~~~~~~~~  104 (414)
T PRK08308         86 GESDFT----------------K-------------------LE--------------------------AVNYLAEEPS  104 (414)
T ss_pred             cCcccc----------------c-------------------cc--------------------------CCCCCCCCce
Confidence            752100                0                   00                          0112468899


Q ss_pred             EEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHHH-hHhhhhcCeeEEec---chHHHHH
Q 006530          209 TYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT---AVRNLKD  284 (641)
Q Consensus       209 ~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~---~~~~~~~  284 (641)
                      +++|||||||.||+|.+||+++.+.+..+...+....+|+++..+|++|.+++.. .+.++..|+++++.   ++..+++
T Consensus       105 ~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~  184 (414)
T PRK08308        105 LLQYSSGTTGEPKLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALN  184 (414)
T ss_pred             EEEECCCCCCCCcEEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHH
Confidence            9999999999999999999999998888888888889999999999999999865 56678999998874   5788999


Q ss_pred             HHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHH
Q 006530          285 DLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWA  364 (641)
Q Consensus       285 ~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (641)
                      .++++++|++.++|.++..+.+....                                                      
T Consensus       185 ~l~~~~~t~~~~~P~~~~~l~~~~~~------------------------------------------------------  210 (414)
T PRK08308        185 ILRNTPQHILYAVPLMLHILGRLLPG------------------------------------------------------  210 (414)
T ss_pred             HHHHhCCeEEEcCHHHHHHHHhcCCc------------------------------------------------------
Confidence            99999999999999999887542100                                                      


Q ss_pred             HHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhHHHHHHHcCCeeeeccccccccCeeeecCCCCCccccc
Q 006530          365 RIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSV  444 (641)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~  444 (641)
                                               -..++.+++||+++++.+.+.++..+.++++.||+||++.+...  .....++++
T Consensus       211 -------------------------~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~--~~~~~~~~~  263 (414)
T PRK08308        211 -------------------------TFQFHAVMTSGTPLPEAWFYKLRERTTYMMQQYGCSEAGCVSIC--PDMKSHLDL  263 (414)
T ss_pred             -------------------------cccccEEEEccCCCCHHHHHHHHHhCChhhhccCccccCCeeec--CCCCCCCcc
Confidence                                     00237789999999998855555556789999999999865432  222356789


Q ss_pred             ccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccCCCCccccCceeEEcCCCCCCCccccCceE
Q 006530          445 GHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVL  524 (641)
Q Consensus       445 G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l  524 (641)
                      |.|++++++++.+.       .|+.|||++++                   .++||+|||+|++++          ||.+
T Consensus       264 G~p~~~~~~~~~~~-------~~~~gel~v~~-------------------~~~~~~TGDl~~~~~----------dg~l  307 (414)
T PRK08308        264 GNPLPHVSVSAGSD-------ENAPEEIVVKM-------------------GDKEIFTKDLGYKSE----------RGTL  307 (414)
T ss_pred             CccCCCeEEEEecC-------CCCCceEEEEc-------------------CCceEECCceEEECC----------CccE
Confidence            99999999998752       35679999974                   368999999999999          8999


Q ss_pred             EEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC----ceEEEEecCHHHHHHHHHHcCCCCCChhhcCh
Q 006530          525 VLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSK  600 (641)
Q Consensus       525 ~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~  600 (641)
                      +++||.+|+|++ +|++|+|.+||+.+.++|+|.+|+|++.+++    .+.++++..                  ...+.
T Consensus       308 ~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~------------------~~~~~  368 (414)
T PRK08308        308 HFMGRMDDVINV-SGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISH------------------EEIDP  368 (414)
T ss_pred             EEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeC------------------CCCCH
Confidence            999999999997 9999999999999999999999999998765    345666653                  23567


Q ss_pred             HHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCccc
Q 006530          601 EKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       601 ~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                      ++++++++++++.|+     .|.++..++..|.+.+||+-
T Consensus       369 ~~l~~~l~~~l~~~~-----~P~~i~~v~~iP~t~~GKi~  403 (414)
T PRK08308        369 VQLREWCIQHLAPYQ-----VPHEIESVTEIPKNANGKVS  403 (414)
T ss_pred             HHHHHHHHHhCcccc-----CCcEEEEeccCCCCCCcCee
Confidence            889999999999998     67789999999999999973

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=7.5e-49  Score=421.97  Aligned_cols=386  Identities=24%  Similarity=0.317  Sum_probs=318.4

Q ss_pred             eHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCceEEEecC
Q 006530           52 CESKLEQEILDFAEGLRV-IGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVALAVEN  130 (641)
Q Consensus        52 Ty~eL~~~~~~lA~~L~~-~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~  130 (641)
                      ||.||.++++++|+.|.+ .|+++||+|+++++|+++++++++||+++|++++++++..+.+.+.++++.++++.+++++
T Consensus         1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~   80 (408)
T TIGR01733         1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS   80 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence            799999999999999998 8999999999999999999999999999999999999999999999999999999999986


Q ss_pred             hhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhhhcccCCCchhhcccccCCCCCCCEEEE
Q 006530          131 PEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATY  210 (641)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i  210 (641)
                       .....+....     . ..+...                ..+.....  ......          ........++++++
T Consensus        81 -~~~~~~~~~~-----~-~~~~~~----------------~~~~~~~~--~~~~~~----------~~~~~~~~~~~~~i  125 (408)
T TIGR01733        81 -ALASRLAGLV-----L-PIILVD----------------PLELAALD--DAPAPP----------PPDAPSGPDDLAYV  125 (408)
T ss_pred             -chhhhccccC-----C-ceEEec----------------hhhhhhcc--cccccc----------cccCCCCCCCcEEE
Confidence             3322221110     0 111110                00000000  000000          01111357899999


Q ss_pred             EeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHHHhHhhhhcCeeEEecc------hHHHHH
Q 006530          211 VYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA------VRNLKD  284 (641)
Q Consensus       211 ~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~------~~~~~~  284 (641)
                      +|||||||.||+|.+||+++...+..+...+.+.++|++++..|++|.+++...+.++..|+++++.+      +..+..
T Consensus       126 ~~TSGTtG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~  205 (408)
T TIGR01733       126 IYTSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAA  205 (408)
T ss_pred             EEcCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHH
Confidence            99999999999999999999999998888888999999999999999999888889999999998853      467788


Q ss_pred             HHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHH
Q 006530          285 DLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWA  364 (641)
Q Consensus       285 ~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (641)
                      .++++++|.+.++|.++..+.+...                                                       
T Consensus       206 ~~~~~~~t~l~~~p~~~~~l~~~~~-------------------------------------------------------  230 (408)
T TIGR01733       206 LIAEHPVTVLNLTPSLLALLAAALP-------------------------------------------------------  230 (408)
T ss_pred             HHHHcCceEEEeCHHHHHHHHHhhh-------------------------------------------------------
Confidence            8899999999999999998876422                                                       


Q ss_pred             HHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHcC-CeeeeccccccccCeeeecCCCC---C
Q 006530          365 RIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG-VKVQVGYGLTESSPVIAARRPTC---N  439 (641)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~~-~~v~~~yG~tE~~~~~~~~~~~~---~  439 (641)
                                             ..+.++|.+++||+++++.+ +.+.+.++ ..+++.||+||++.++.......   .
T Consensus       231 -----------------------~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~  287 (408)
T TIGR01733       231 -----------------------PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAP  287 (408)
T ss_pred             -----------------------hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccC
Confidence                                   12344599999999999988 55666676 89999999999987765322211   1


Q ss_pred             --cccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccCCC------C--ccccCceeEEc
Q 006530          440 --VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED------G--WLNTGDIGWIA  509 (641)
Q Consensus       440 --~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~------g--~~~TGDl~~~~  509 (641)
                        .+.++|.|.++++++|++++ ++.++.|+.|||+++|++++.||+++++.+.+.|..+      |  ||+|||+|+++
T Consensus       288 ~~~~~~~G~~~~~~~~~i~~~~-~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d  366 (408)
T TIGR01733       288 RESPVPIGRPLANTRLYVLDDD-LRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYL  366 (408)
T ss_pred             CccccccCcccCCceEEEECCC-CCCCCCCCceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEc
Confidence              26789999999999999966 8899999999999999999999999999998887432      2  99999999999


Q ss_pred             CCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEE
Q 006530          510 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVV  562 (641)
Q Consensus       510 ~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v  562 (641)
                      +          +|.+++.||.+|+|+. +|++++|.+||+.+..||.|.||+|
T Consensus       367 ~----------~g~~~~~gR~~~~i~~-~G~~v~~~~ie~~l~~~~~v~~~~v  408 (408)
T TIGR01733       367 P----------DGNLEFLGRIDDQVKI-RGYRIELGEIEAALLRHPGVREAVV  408 (408)
T ss_pred             C----------CCCEEEeeccCCEEEe-CeEEechHHHHHHHhcCcchhhhcC
Confidence            9          8999999999999997 9999999999999999999999875

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=6.2e-40  Score=346.47  Aligned_cols=305  Identities=26%  Similarity=0.325  Sum_probs=249.9

Q ss_pred             CCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHHHhHhhhhcCeeEEe---
Q 006530          200 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY---  276 (641)
Q Consensus       200 ~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~---  276 (641)
                      ....++|+++++|||||||.||+|.++|+++...+......+  ...++++..+|++|..++...+.++..|+++++   
T Consensus        30 ~~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~  107 (358)
T PRK07824         30 GEPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL--GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDV  107 (358)
T ss_pred             CCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc--CCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCc
Confidence            344578999999999999999999999999988777665543  345788999999999999888888888988876   


Q ss_pred             ---cchHHHHHHHhhhC--CeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhHhcccccccCCCC
Q 006530          277 ---TAVRNLKDDLQRYQ--PHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ  351 (641)
Q Consensus       277 ---~~~~~~~~~i~~~~--~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (641)
                         +++..+.+.+++++  .++...+|..+..+.....                                          
T Consensus       108 ~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~------------------------------------------  145 (358)
T PRK07824        108 SAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA------------------------------------------  145 (358)
T ss_pred             CCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc------------------------------------------
Confidence               35778899999998  4566667776655432100                                          


Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhHHHHHHHcCCeeeeccccccccCee
Q 006530          352 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVI  431 (641)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l~~~~~~~~~~v~~~yG~tE~~~~~  431 (641)
                                                        ....+.++|.+++||++++..+.+....++.++++.||+||++..+
T Consensus       146 ----------------------------------~~~~~~~l~~i~~gG~~l~~~~~~~~~~~~~~v~~~YG~TE~~~~~  191 (358)
T PRK07824        146 ----------------------------------ATAALAELDAVLVGGGPAPAPVLDAAAAAGINVVRTYGMSETSGGC  191 (358)
T ss_pred             ----------------------------------ccCCcccceEEEECCCCCCHHHHHHHHhcCCcEEecccCCccCCCc
Confidence                                              0023455699999999999998666667799999999999987543


Q ss_pred             eecCCCCCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccCCCCccccCceeEEcCC
Q 006530          432 AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  511 (641)
Q Consensus       432 ~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~  511 (641)
                      .          ..|.|++++++++.+            |||+++|+.++.||++++..+  .|..+|||+|||+|++ + 
T Consensus       192 ~----------~~G~~~~g~~v~i~~------------Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TGDl~~~-~-  245 (358)
T PRK07824        192 V----------YDGVPLDGVRVRVED------------GRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTDDLGAL-D-  245 (358)
T ss_pred             C----------cCceeCCCCEEEecC------------CEEEEecCccccccCCCcccc--cccCCCceecccEEEE-e-
Confidence            2          358899999999843            899999999999999988643  4556789999999999 6 


Q ss_pred             CCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCC----ceEEEEecCHHHHHHHHHH
Q 006530          512 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKR  587 (641)
Q Consensus       512 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----~~~a~vv~~~~~~~~~~~~  587 (641)
                               +|.+++.||.+|+|++ +|++|+|.+||+.|.+||+|.+|+|++.+++    .+.++++...+        
T Consensus       246 ---------~g~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~--------  307 (358)
T PRK07824        246 ---------DGVLTVLGRADDAIST-GGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGG--------  307 (358)
T ss_pred             ---------CCEEEEEeccCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCC--------
Confidence                     7999999999999997 9999999999999999999999999998765    34566655422        


Q ss_pred             cCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCcc
Q 006530          588 LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  639 (641)
Q Consensus       588 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l  639 (641)
                              .....++++++++++|+.|+     .|++|.++++.|.+.+||+
T Consensus       308 --------~~~~~~~i~~~~~~~l~~~~-----~P~~i~~v~~lP~t~~GKi  346 (358)
T PRK07824        308 --------PAPTLEALRAHVARTLDRTA-----APRELHVVDELPRRGIGKV  346 (358)
T ss_pred             --------CCcCHHHHHHHHHhhCcccc-----CCCEEEEecCCCCCCCccc
Confidence                    34577899999999999998     7788999999999999997

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.3e-35  Score=337.80  Aligned_cols=404  Identities=21%  Similarity=0.267  Sum_probs=324.8

Q ss_pred             hHHHHHhhhhhhhhhhhhhcccCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q 006530           23 GFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN  102 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~  102 (641)
                      .+....++++.+.|++.++...+..   +||+|+..+++++|+.|.+.|+.+++.|++++++++++++.++|++++|+.+
T Consensus       228 ~i~~~f~~~a~~~p~~~a~~~~~~~---lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~~y  304 (642)
T COG1020         228 TIHLLFEEQAATTPDAVALVRGGQQ---LTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAY  304 (642)
T ss_pred             hHHHHHHHHHHhCCCceeEecCCCc---ccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCCeE
Confidence            4566677777788888888877544   9999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhh
Q 006530          103 VVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRE  182 (641)
Q Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (641)
                      +|+++.++.+.+.+++++++++.+++.. ......    ...+.    +..                    .........
T Consensus       305 vP~d~~~P~~r~~~~l~~~~~~~~~~~~-~~~~~~----~~~~~----~~~--------------------~~~~~~~~~  355 (642)
T COG1020         305 VPLDPLYPAERLAYILEDSRPTLLLTQA-HLRVDD----VGLPG----LAL--------------------DDALSEIPD  355 (642)
T ss_pred             ecCCCCChHHHHHHHHhhcCccEEEecc-cccccc----ccCCc----ccc--------------------ccccccCCc
Confidence            9999999999999999999999999873 111100    00000    000                    000000000


Q ss_pred             hhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHH
Q 006530          183 SRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERA  262 (641)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~  262 (641)
                      ..            .......+++.++++|||||||.||||..+|+++.+.+.+....+....+|+++...++.+.....
T Consensus       356 ~~------------~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l~~~s~~fD~~~~  423 (642)
T COG1020         356 TD------------PIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVF  423 (642)
T ss_pred             cC------------cccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEeecCCcccchhHH
Confidence            00            001233568999999999999999999999999999888888889999999999999998888888


Q ss_pred             HhHhhhhcCeeEEec------chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHH
Q 006530          263 CGYFIFSRGIELMYT------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAF  336 (641)
Q Consensus       263 ~~~~~l~~G~~~v~~------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (641)
                      ..+.++..|+++++.      ++..+...+.++++|.+..+|..+..+........                        
T Consensus       424 ~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~------------------------  479 (642)
T COG1020         424 EIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPD------------------------  479 (642)
T ss_pred             HHHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhcc------------------------
Confidence            899999999999985      46788889999999999999999988866411100                        


Q ss_pred             HhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhH-HHHHHHc-
Q 006530          337 KRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-  414 (641)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l-~~~~~~~-  414 (641)
                                                                       .......+|.+++||+.++..+ .++.... 
T Consensus       480 -------------------------------------------------~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~  510 (642)
T COG1020         480 -------------------------------------------------LISPCERLRQLLSGGEALPLALVQRLLQLAA  510 (642)
T ss_pred             -------------------------------------------------ccCCcccccEEEEcCCCCCHHHHHHHHHhcc
Confidence                                                             0011122488999999999987 4455544 


Q ss_pred             -CCeeeeccccccccCeeeecCCCCCc--ccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhh
Q 006530          415 -GVKVQVGYGLTESSPVIAARRPTCNV--LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATK  491 (641)
Q Consensus       415 -~~~v~~~yG~tE~~~~~~~~~~~~~~--~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~  491 (641)
                       ...+.+.||.||+.............  ..++|.|+++.++.|.| +..+.+|.|..||+++.|..+..||+++|+.|.
T Consensus       511 ~~~~l~~~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild-~~~~~~p~gv~gel~i~g~~~a~gy~~~p~lt~  589 (642)
T COG1020         511 LARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILD-QGLRPLPLGVPGELYIAGLGLALGYLNRPDLTA  589 (642)
T ss_pred             ccceEeeccCccHHhhheeeEEcccccCCCCCcceeeCCCeEEEEC-CCCCcCCCCCCeeeEECCcchhhhhcCChhhhH
Confidence             46899999999976554433322221  35899999999999999 779999999999999999999999999999999


Q ss_pred             hccCCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCc
Q 006530          492 QALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSS  555 (641)
Q Consensus       492 ~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p  555 (641)
                      +.|..+.+|+|||++++.+          ||.+.++||.|+.+|+ +|++|.+.|||..+.++|
T Consensus       590 ~~f~~~~~y~tgD~~r~~~----------dg~~e~lgr~D~qvki-~g~Riel~eie~~l~~~~  642 (642)
T COG1020         590 ERFIALRLYRTGDLARPLA----------DGALEYLGRKDSQVKI-RGFRIELGEIEAALAEQP  642 (642)
T ss_pred             HHhhhccCccCCCeeeECC----------CCeEEEeccccceeEe-ceEecCcHHHHHHHhcCC
Confidence            9996545899999999999          9999999999999998 999999999999998875

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=100.00  E-value=1.9e-33  Score=296.63  Aligned_cols=285  Identities=19%  Similarity=0.149  Sum_probs=217.8

Q ss_pred             CCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCC--CCEEEEECChhhHHHHHH-hHhhhhcCeeEEec---
Q 006530          204 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAEN--GDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT---  277 (641)
Q Consensus       204 ~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~--~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~---  277 (641)
                      .++.++++|||||||.||+|.+||+++.+.+..+...++...  .+++++++|++|++++.. .+.++..|+++++.   
T Consensus        94 ~~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~  173 (386)
T TIGR02372        94 TPTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAA  173 (386)
T ss_pred             CCCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCC
Confidence            355788999999999999999999999988887777777644  468999999999999754 56678899999875   


Q ss_pred             chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhHhcccccccCCCCchhHHH
Q 006530          278 AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  357 (641)
Q Consensus       278 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (641)
                      ++..+++.++.  .|++.++|+++..+.+..                                                 
T Consensus       174 ~~~~~l~~i~~--~t~~~~~P~~l~~l~~~~-------------------------------------------------  202 (386)
T TIGR02372       174 PASGIMRHARP--GDLIVGTPFIWEQLADLD-------------------------------------------------  202 (386)
T ss_pred             ChHHHHHhhcc--CCEEEECcHHHHHHHhhC-------------------------------------------------
Confidence            34556665543  289999999998875420                                                 


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhHHHHHHHcCC-eeeeccccccccCeeeecCC
Q 006530          358 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGV-KVQVGYGLTESSPVIAARRP  436 (641)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l~~~~~~~~~-~v~~~yG~tE~~~~~~~~~~  436 (641)
                                                    ..+++++. ++||+++++++.+.+...+. .+++.||+||+++++.... 
T Consensus       203 ------------------------------~~l~slr~-i~gGa~l~~~l~~~~~~~g~~~v~~~YG~TEt~~i~~~~~-  250 (386)
T TIGR02372       203 ------------------------------YRLPGVVG-VSSGAPSTAATWRCLLAAGLARLLEVYGATETGGIGLREA-  250 (386)
T ss_pred             ------------------------------cCCCccee-EecCCCCCHHHHHHHHHhcccchhheeccccccccccccC-
Confidence                                          11223354 67899999988555555564 6999999999987654322 


Q ss_pred             CCCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccCCCCccccCceeEEcCCCCCCC
Q 006530          437 TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR  516 (641)
Q Consensus       437 ~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~  516 (641)
                          ++..|.++|++++++ +  ++.        +   .|                   ...|++|||++++++      
T Consensus       251 ----~~~~~~~~p~~~~~~-~--~~~--------~---~g-------------------~~~~~~tgD~g~~d~------  287 (386)
T TIGR02372       251 ----PDDPFRLLPDLACFA-D--TLS--------S---AG-------------------LARRLDLQDRLAWDK------  287 (386)
T ss_pred             ----CCCCcccCCCccccC-C--Ccc--------C---CC-------------------ccceeecCceEEEcC------
Confidence                234567788766543 1  110        0   01                   123688999999999      


Q ss_pred             ccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEecCCCceEEEEecCHHHHHHHHHHcCCCCCChh
Q 006530          517 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADAS  596 (641)
Q Consensus       517 ~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~  596 (641)
                          +|+++|.||+||+|++ +|++|+|.+||+.|.+||+|.+|+|+.. ++.+.++|+++++.              ..
T Consensus       288 ----~G~l~i~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~~~v~~~-g~~~~a~vv~~~~~--------------~~  347 (386)
T TIGR02372       288 ----DGGFTILGRKDEILQV-GGVNVSPGHVRDILERNPRVRAAAVRLD-GRRLKAFIVVAEDA--------------DE  347 (386)
T ss_pred             ----CCcEEEecccCCEEEE-CCEEEcHHHHHHHHHcCCCceEEEEEcC-CceEEEEEEECCCC--------------Ch
Confidence                9999999999999997 9999999999999999999999999754 45678888876431              01


Q ss_pred             hcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCcc
Q 006530          597 ELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  639 (641)
Q Consensus       597 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l  639 (641)
                      +...++++++++++++.|+     +|+.|.++++.|.+.+||+
T Consensus       348 ~~~~~~l~~~~~~~L~~~~-----~P~~i~~~~~lP~t~~GKi  385 (386)
T TIGR02372       348 AELEIELRATAARHLPAPA-----RPDRFRFGTELPRTGAGKL  385 (386)
T ss_pred             HHHHHHHHHHHHHhCCCCC-----CCcEEEEcccCCCCCCCCc
Confidence            1224678888888888888     8888999999999999997

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.98  E-value=8.5e-31  Score=282.66  Aligned_cols=282  Identities=20%  Similarity=0.223  Sum_probs=204.3

Q ss_pred             CCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHH---HhhhcCCCCCCEEEEECChhhHHHHH-HhHhhhhcCeeEEec
Q 006530          202 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRS---LYDIVPAENGDKFLSMLPPWHVYERA-CGYFIFSRGIELMYT  277 (641)
Q Consensus       202 ~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~---~~~~~~~~~~d~~l~~~pl~~~~g~~-~~~~~l~~G~~~v~~  277 (641)
                      .+.++++.+++||||||.||++.+||.++......   ....++..++|++++..++.+..+.. ..+..+..|++++..
T Consensus        72 ~~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  151 (422)
T TIGR02155        72 VPREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPI  151 (422)
T ss_pred             CChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEec
Confidence            35668899999999999999999999988655333   23446888999998876654433322 234457788888764


Q ss_pred             ---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhHhcccccccCCCCchh
Q 006530          278 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  354 (641)
Q Consensus       278 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (641)
                         ++..+++.+++++||++.++|+++..|++.......+                                        
T Consensus       152 ~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~----------------------------------------  191 (422)
T TIGR02155       152 SGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGID----------------------------------------  191 (422)
T ss_pred             CCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCC----------------------------------------
Confidence               4678999999999999999999999987654332100                                        


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhHHH-HHHHcCCeeeeccccccccC-eee
Q 006530          355 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGVKVQVGYGLTESSP-VIA  432 (641)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l~~-~~~~~~~~v~~~yG~tE~~~-~~~  432 (641)
                                                       ....++|.+++||+++++.+.+ +.+.+|+++++.||+||+++ .+.
T Consensus       192 ---------------------------------~~~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~~~~~~  238 (422)
T TIGR02155       192 ---------------------------------PAQTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVIGPGVA  238 (422)
T ss_pred             ---------------------------------cccCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhcCCcee
Confidence                                             0112348999999999998855 44557999999999999853 222


Q ss_pred             ecCCCCCcccccccCc--CCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccCCCCccccCceeEEcC
Q 006530          433 ARRPTCNVLGSVGHPI--NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP  510 (641)
Q Consensus       433 ~~~~~~~~~~~~G~~~--~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~  510 (641)
                      ..... .   ..|.++  +++.++|+|+++++++++|+.|||++++.            +...| +.+||+|||++++++
T Consensus       239 ~~~~~-~---~~g~~~~~~~~~~eivd~~~g~~v~~Ge~Gelvvt~~------------~~~~~-p~~ry~TGDl~~~~~  301 (422)
T TIGR02155       239 MECVE-T---QDGLHIWEDHFYPEIIDPHTGEVLPDGEEGELVFTTL------------TKEAL-PVIRYRTRDLTRLLP  301 (422)
T ss_pred             ecccc-c---CCCceEecCeeEEEEECCCCCCCCCCCCeeEEEEecC------------Ccccc-ceeeEEcCcEEEEEC
Confidence            21111 1   112233  35778899988899999999999999963            23344 468999999999987


Q ss_pred             CCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccc-eEEEEecCC---CceEEEEecCH
Q 006530          511 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIR-QIVVIGQDQ---RRPGAIIVPDK  578 (641)
Q Consensus       511 ~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~-~~~v~g~~~---~~~~a~vv~~~  578 (641)
                        .||+..  ...+++.||.+|+|++ +|.+|+|.+||++|.+||+|. +++++....   +.+.+.|+++.
T Consensus       302 --~~Gr~~--~~~~~i~GR~~d~i~~-~G~~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~~  368 (422)
T TIGR02155       302 --GTARTM--RRMDRITGRSDDMLII-RGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELKP  368 (422)
T ss_pred             --CCCCcc--cccccccCccCCeEEE-CCEEECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEec
Confidence              333322  1256899999999998 899999999999999999997 555544322   25666666653

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.97  E-value=1.2e-29  Score=274.84  Aligned_cols=477  Identities=17%  Similarity=0.135  Sum_probs=323.3

Q ss_pred             hhHHHHHhhhhhhhhhhhhhc---ccCCceEEEeHHHHHHHHHHHHHHHHHcC-CCCCCEEEEEcCCChhHHHHHHHHHh
Q 006530           22 HGFRVFTRNCVDAVATRIRIS---RRNHRFRVFCESKLEQEILDFAEGLRVIG-VKPEEKLSLFSDNSCRWLVADQGMLA   97 (641)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~a~~---~~~~~~~~~Ty~eL~~~~~~lA~~L~~~G-l~~Gd~Vai~~~n~~e~i~~~lA~~~   97 (641)
                      ..+.++++-.+++.|+.+|+.   ..+.+..++||++|..++.+++.+|.+.+ +++||+|++++++++|++++++||+.
T Consensus       770 ~~ile~Lq~R~a~tp~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly  849 (1363)
T KOG3628|consen  770 LTILEILQWRAAKTPDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACLY  849 (1363)
T ss_pred             HHHHHHHHHHhhcCCCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHHh
Confidence            456667777777888888764   34556688999999999999999999774 99999999999999999999999999


Q ss_pred             cCCEEEecCCCC------CHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccc-----cEEEEEeCCCCCCCCCccC
Q 006530           98 TGAINVVRGSRS------SSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAM-----RFIILLWGKKSSVAPDIVE  166 (641)
Q Consensus        98 ~G~~~v~l~~~~------~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~  166 (641)
                      +|++++|+.|..      ..+.+..+++..++.+++++. .. ..+.+.......+     ..++...            
T Consensus       850 ~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~-~v-~~lLrsr~~s~~~~~s~~p~i~~~~------------  915 (1363)
T KOG3628|consen  850 LGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQ-KV-LKLLRSREASAHVDQSAIPLILVLP------------  915 (1363)
T ss_pred             cCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecH-HH-HHHHhhhhHHHHhhhhcchhhhccc------------
Confidence            999999998864      355788999999999999984 22 2322222211111     1111110            


Q ss_pred             CCCcccHHHHHHhhhhhhcccCCCchhhcccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCC
Q 006530          167 EIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENG  246 (641)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~  246 (641)
                      +++.. +    ........   +..   ...++...+.+.+|++.+.--++|.--++.+||..+++.+....+.+.+.+.
T Consensus       916 ~~~~t-~----~k~~~~~~---k~~---~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~  984 (1363)
T KOG3628|consen  916 KLPET-I----RKRKKNIK---KLN---TPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKS  984 (1363)
T ss_pred             ccchh-h----hhhhhhhh---ccC---CCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccC
Confidence            11100 1    11111000   000   0012344567899999999999999999999999999999999999999999


Q ss_pred             CEEEEECChhhHHHHHH-hHhhhhcCeeEEec-------chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHH
Q 006530          247 DKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAA  318 (641)
Q Consensus       247 d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~-------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~  318 (641)
                      .-++.+.+++.+.|+.. ++..++.|...++.       ++..++..++++++.-.+.+-..+.....+...+...... 
T Consensus       985 rpl~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~- 1063 (1363)
T KOG3628|consen  985 RPLLGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSK- 1063 (1363)
T ss_pred             CceEEEecCccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhh-
Confidence            99999999998888875 67779999997775       3677888999999988888777776665543332111100 


Q ss_pred             HHHHHHHHHHHhHHHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCc-eeE-
Q 006530          319 RRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGIS-KAG-  396 (641)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-r~i-  396 (641)
                                          ..                  .+..  +++....+.+...+.-..|.+....++.. +.+ 
T Consensus      1064 --------------------~g------------------nn~s--~s~vv~~~~RPr~ali~sf~klfa~igLsp~avS 1103 (1363)
T KOG3628|consen 1064 --------------------RG------------------NNTS--SSIVVPAEERPRIALIASFKKLFAAIGLSPRAVS 1103 (1363)
T ss_pred             --------------------hh------------------cccc--cceeeecCCccHHHHHHHHHHHHHHcCCChhhhc
Confidence                                00                  0000  01111223334555556666666666554 111 


Q ss_pred             EeecCCCChhHHHHHHHcCCeeeeccccccccCee---------eecCCCCCc-----ccccccCcCCcEEEEeeCCCCc
Q 006530          397 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVI---------AARRPTCNV-----LGSVGHPINHTEIKIVDAETNE  462 (641)
Q Consensus       397 ~~gG~~l~~~l~~~~~~~~~~v~~~yG~tE~~~~~---------~~~~~~~~~-----~~~~G~~~~~~~v~i~d~~~~~  462 (641)
                      .+=+..+.+..          .+++|...|-....         ..+..+...     .-..|...+++++.|++|++..
T Consensus      1104 tsys~r~Np~I----------c~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~IvnPEtk~ 1173 (1363)
T KOG3628|consen 1104 TSYSSRVNPFI----------CLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVNPETKG 1173 (1363)
T ss_pred             ccccccCChHh----------hhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeEEeCCcccc
Confidence            11111111111          11112211111110         001111111     1235888899999999999999


Q ss_pred             cCCCCCCceEEEecCcccccccCCch-hhhhcc---------CCCCccccCceeEEcCCCCCCCccccCceEEEeccccc
Q 006530          463 VLPAGSKGIVKVRGSQVMQGYFKNPS-ATKQAL---------DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKD  532 (641)
Q Consensus       463 ~~~~g~~Gel~v~g~~~~~gY~~~~~-~~~~~~---------~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d  532 (641)
                      +|.+|+.||||+.|.+.+.+|++-.. .....|         .+.+|.||||+|++....++..+.+....+|++|-+++
T Consensus      1174 pc~dge~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~E 1253 (1363)
T KOG3628|consen 1174 PCRDGELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDE 1253 (1363)
T ss_pred             ccccCCcceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccceeeeeEEEeecccc
Confidence            99999999999999999988875311 122222         23569999999999988777666666778999999999


Q ss_pred             eEEeCCceeeccHHhHHHHhc-CcccceEEEEecCCCceEEEEec
Q 006530          533 TIVLSTGENVEPLELEEAALR-SSLIRQIVVIGQDQRRPGAIIVP  576 (641)
Q Consensus       533 ~i~~~~G~~v~p~~iE~~l~~-~p~V~~~~v~g~~~~~~~a~vv~  576 (641)
                      .+.+ +|.+.+|.+||..+.+ ||.|.+|+|+....- ++.++.+
T Consensus      1254 tlEl-~GL~h~p~DIE~TV~~vH~~I~~cavF~~~gl-vVvviE~ 1296 (1363)
T KOG3628|consen 1254 TLEL-NGLRHFPSDIETTVERVHPSIGGCAVFQATGL-VVVVIEC 1296 (1363)
T ss_pred             eeee-cCcccCcchHHHHHHHhcccccceeeEeeCCe-EEEEEEe
Confidence            9998 9999999999988875 999999999987653 3333443

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.95  E-value=1.3e-26  Score=250.51  Aligned_cols=264  Identities=17%  Similarity=0.180  Sum_probs=190.8

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhh---hcCCCCCCEEEEECChhhHHHHHH-hHhhhhcCeeEEe
Q 006530          201 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD---IVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMY  276 (641)
Q Consensus       201 ~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~  276 (641)
                      ..+.++++.+.+||||||.||++.+||+++.........   ..++.++|+++...|..+..+... .+.++..|++++.
T Consensus        82 ~~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~  161 (445)
T TIGR03335        82 SADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIP  161 (445)
T ss_pred             cCCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEc
Confidence            345678999999999999999999999998765544332   358889999999998877655543 3445778887765


Q ss_pred             cc-hHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhHhcccccccCCCCchhH
Q 006530          277 TA-VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  355 (641)
Q Consensus       277 ~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (641)
                      .. ....++.++++++|.+.++|+.+..++..+.....+                                         
T Consensus       162 ~~~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~-----------------------------------------  200 (445)
T TIGR03335       162 EGKCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGID-----------------------------------------  200 (445)
T ss_pred             CCchhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCC-----------------------------------------
Confidence            43 356788999999999999999888776654332110                                         


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhHHHHH-HHcCCeeeeccccccccCeeeec
Q 006530          356 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAIGVKVQVGYGLTESSPVIAAR  434 (641)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l~~~~-~~~~~~v~~~yG~tE~~~~~~~~  434 (641)
                                                      ....++|.+++||++++..+.+.+ +.+|+++++.||+||++. +..+
T Consensus       201 --------------------------------~~~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~~-~~~c  247 (445)
T TIGR03335       201 --------------------------------PAESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGTM-CGEC  247 (445)
T ss_pred             --------------------------------cccCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhhh-eEEe
Confidence                                            011234899999999999885554 457999999999999863 2222


Q ss_pred             CCCCCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccCCCCccccCceeEEc-CCCC
Q 006530          435 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA-PHHS  513 (641)
Q Consensus       435 ~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~-~~~~  513 (641)
                      ..    ......+.+.+.++|+|++++.++|+|+.|||++++-...-        ++..+ +---|+|||++++. +.+|
T Consensus       248 ~~----~~g~h~~~d~~~vEIvDp~~~~~vp~Ge~GELvvT~L~~~~--------~r~~~-PliRYrtgD~~~~~~~~~C  314 (445)
T TIGR03335       248 QA----VAGLHVPEDLVHLDVYDPRHQRFLPDGECGRIVLTTLLKPG--------ERCGS-LLINYDTEDTTVVISRDRC  314 (445)
T ss_pred             cC----CCCccccCCceEEEEEcCCCCCCCcCCCceEEEEEecCCCC--------ccCCc-eEEEeecCceEEEecCCCC
Confidence            11    11233344568899999988899999999999998533100        00011 11239999999873 3455


Q ss_pred             -CCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCc
Q 006530          514 -RGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSS  555 (641)
Q Consensus       514 -~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p  555 (641)
                       ||+..+.   +...||.||++++ +|.+|+|.+||++|.+++
T Consensus       315 ~CGr~~~r---~~~~gR~dd~~~~-~g~~~~p~~ie~~l~~~~  353 (445)
T TIGR03335       315 PCGRTHMR---ILNPEREAETIWI-SGVPFNRVDVERAVFQRE  353 (445)
T ss_pred             CCCCCcce---eCCCcccCceEEE-CCEEeCHHHHHHHHhccC
Confidence             6655433   4456999999999 999999999999999953

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.91  E-value=1.1e-23  Score=236.89  Aligned_cols=464  Identities=17%  Similarity=0.144  Sum_probs=293.3

Q ss_pred             cCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEEecCCCCC----HHHHHHHHH
Q 006530           44 RNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSS----SEELLHIYN  119 (641)
Q Consensus        44 ~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v~l~~~~~----~~~l~~~l~  119 (641)
                      ..+.....||++....++.+++.|...|..+|+.|++++..+.++++..++++++|..+++++|+++    .+.+..+..
T Consensus        63 ~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~~~~g~~~~~idp~~~~~e~~~~~~~ia~  142 (1032)
T KOG1178|consen   63 ESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAVLAAGLTFLPIDPSWPNSELAGYLMRIAH  142 (1032)
T ss_pred             ccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeeehhhcceEEEEecCCCcccccchHHHhhhh
Confidence            3566688999999999999999999999999999999999999999999999999999999999999    222111111


Q ss_pred             hcC-ceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHH---HHhhhhhhcccCCCchhhc
Q 006530          120 HSE-SVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEI---IDLGRESRKAFSDSNDARK  195 (641)
Q Consensus       120 ~~~-~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  195 (641)
                      ... ...-+....+.....   ....                       .+..+.+.+   +..-.....       .  
T Consensus       143 ~~~s~~~~i~~~l~i~~~~---~~~~-----------------------~~~~sv~~~~~~f~~~~~~~~-------~--  187 (1032)
T KOG1178|consen  143 FLTSVELEIVRRLNIIDIL---LNSL-----------------------FPKLSVETIADSFQMVLHNED-------T--  187 (1032)
T ss_pred             hheeccceehhhhhhHHHH---hhcc-----------------------ccccchhhccchhhhhhccCC-------C--
Confidence            110 001111110000000   0000                       001111111   110000000       0  


Q ss_pred             ccccCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECC-hhhHHHHHHhHhhhhcCee-
Q 006530          196 HYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLP-PWHVYERACGYFIFSRGIE-  273 (641)
Q Consensus       196 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p-l~~~~g~~~~~~~l~~G~~-  273 (641)
                       .......++..+++.||||+||.||+|..+|..+.....+....++....+++ ...+ .+.+-.....+.++++++. 
T Consensus       188 -r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~-~~~~~~~~~d~i~~~~~~~L~~~~~  265 (1032)
T KOG1178|consen  188 -REIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRF-TFKTSVYFDDTIQKFIGALLFNGNN  265 (1032)
T ss_pred             -cceeeecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchh-hhhheeecccchHHHHhhHhhcCce
Confidence             01123456678899999999999999999999999999998888888877765 2222 2222222334455444444 


Q ss_pred             EEec------chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhHhccccccc
Q 006530          274 LMYT------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTR  347 (641)
Q Consensus       274 ~v~~------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (641)
                      +..+      .+..+...+++++++....+|++.+++......-                                    
T Consensus       266 l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~------------------------------------  309 (1032)
T KOG1178|consen  266 LLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTS------------------------------------  309 (1032)
T ss_pred             eecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcc------------------------------------
Confidence            4443      2678999999999999999999988876643221                                    


Q ss_pred             CCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhHHH-HHHHc-CCeeeeccccc
Q 006530          348 NQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAI-GVKVQVGYGLT  425 (641)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l~~-~~~~~-~~~v~~~yG~t  425 (641)
                                                ...+.......++..+.+.++....+|++.+..+.- +...+ -.-...-|+.+
T Consensus       310 --------------------------~~~l~~~~~~~dl~~~~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~y~s~  363 (1032)
T KOG1178|consen  310 --------------------------LPLLEHAFSLSDLLTKRSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLPYLST  363 (1032)
T ss_pred             --------------------------hhhhhhhhhcccccccchhheeeeecCCccchhhhhhhhhcccceeeeecccCC
Confidence                                      001111122233334445669999999999988733 44433 11122238888


Q ss_pred             cccCeeeecCCCC----CcccccccCcCC-------cEEEEeeCCCCccCCCCCCceE----EEecCcccccccCCchhh
Q 006530          426 ESSPVIAARRPTC----NVLGSVGHPINH-------TEIKIVDAETNEVLPAGSKGIV----KVRGSQVMQGYFKNPSAT  490 (641)
Q Consensus       426 E~~~~~~~~~~~~----~~~~~~G~~~~~-------~~v~i~d~~~~~~~~~g~~Gel----~v~g~~~~~gY~~~~~~~  490 (641)
                      +..+......-..    -....++.....       ....+.. ..+.+++.++.+..    ...+..+..| +..++..
T Consensus       364 ~~~~~~s~~~~~~s~~ll~~~~v~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~l~~~~~~~~~~~~g-~~~~~~~  441 (1032)
T KOG1178|consen  364 DPTGLVSYDDFSPSKVLLTNENVYSVPKFDSIIGSLTVLESLY-RAGGEGEGGVGKGCLGAEQNLSSWVVDG-YSTPENF  441 (1032)
T ss_pred             CCccceeHHhhCcccceecceeEEeccchhhccCCCcceeeee-ccCcccCCcccceeecccccccceeecc-ccchhhc
Confidence            7655544321110    000111111111       1112222 22333333222222    2223344444 2223322


Q ss_pred             hhcc-----CCCCccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccceEEEEec
Q 006530          491 KQAL-----DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ  565 (641)
Q Consensus       491 ~~~~-----~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~  565 (641)
                      ...+     ..+..|+|||+|+.-.          +|.+.+.||.|++|+. +|.++...+|+..+..||.|.++.+...
T Consensus       442 ~~~~~~~d~~~~r~y~tgD~gr~l~----------ng~l~~~GR~d~qIK~-rG~Ri~L~ei~t~v~~~p~v~~~itl~~  510 (1032)
T KOG1178|consen  442 LPNFLTVDGVKARIYRTGDNGRSLK----------NGGLEISGRADRQIKD-RGVRIELGELNTVVEVHPDVKEAITLAR  510 (1032)
T ss_pred             CCcccccccchhhcccccccceeec----------CCCEEEEEeccceEEE-ccEEEehhhhchhhccCcchhhhheeee
Confidence            2222     1245899999999888          8999999999999998 9999999999999999999999999987


Q ss_pred             CCCc----eEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCcc
Q 006530          566 DQRR----PGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  639 (641)
Q Consensus       566 ~~~~----~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l  639 (641)
                      .+..    +.++|++..+.               +.....+++.++.++|+.|+     .|..++.+++.|.+.+||+
T Consensus       511 ~~~~~~~~l~aFvv~~~~~---------------~~~~~~~i~~~l~~~La~y~-----vPs~~V~l~~vPl~~~GKv  568 (1032)
T KOG1178|consen  511 ENSTVGQTLLAFVVERGGS---------------KSVLIRDIRNYLKKELASYM-----LPSLVVPLAKVPLNPNGKV  568 (1032)
T ss_pred             eccccCceEEEEEeccCCC---------------CchhHHHHHHhhccccccee-----cceEEEEhhhCCcCCCCCc
Confidence            7665    88999987531               22336789999999999999     5556999999999999986

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.91  E-value=2e-22  Score=207.37  Aligned_cols=299  Identities=21%  Similarity=0.238  Sum_probs=213.7

Q ss_pred             cCCCchhhcccccC--CCCCCCEEEEEeCCCCCCCchhHHhhHHHHHH---HHHHHhhhcCCCCCCEEEEECChh-hHHH
Q 006530          187 FSDSNDARKHYKYE--TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLH---QIRSLYDIVPAENGDKFLSMLPPW-HVYE  260 (641)
Q Consensus       187 ~~~~~~~~~~~~~~--~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~---~~~~~~~~~~~~~~d~~l~~~pl~-~~~g  260 (641)
                      ++...+.+.++++.  ....++...|-.||||||.|+-+.+++..+..   .++......+...+|++..+.-.. +..|
T Consensus        70 ~t~K~~lre~ypf~~~~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg  149 (438)
T COG1541          70 FTTKDDLRENYPFGDFAVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGG  149 (438)
T ss_pred             CCcHHHHHHhCCcccccccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCC
Confidence            33333444444533  44566777789999999999999999987644   333444456778899887665421 1111


Q ss_pred             HHHhHhhhhcCeeEEec---chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHH
Q 006530          261 RACGYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFK  337 (641)
Q Consensus       261 ~~~~~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (641)
                      +..-+++-..|++++-.   +...-+..++.++||++.++|+.+..+++.+++.+...                      
T Consensus       150 ~~~~~ga~rig~~vip~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~----------------------  207 (438)
T COG1541         150 LGLHYGAERIGATVIPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDP----------------------  207 (438)
T ss_pred             chhHHHHHhhCEEEEccCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCCh----------------------
Confidence            22223344467777654   35677889999999999999999999999877764110                      


Q ss_pred             hHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhHHHHH-HHcCC
Q 006530          338 RIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAIGV  416 (641)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l~~~~-~~~~~  416 (641)
                                                                         .-.++|.++.|+|+.+++.++.. +.+|+
T Consensus       208 ---------------------------------------------------~~~~lk~~i~gaE~~see~R~~ie~~~g~  236 (438)
T COG1541         208 ---------------------------------------------------DKLSLKKGIFGAEPWSEEMRKVIENRFGC  236 (438)
T ss_pred             ---------------------------------------------------hhcceeEEEEecccCCHHHHHHHHHHhCC
Confidence                                                               01123899999999999996655 55799


Q ss_pred             eeeeccccccccCee-eecCCCCCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccC
Q 006530          417 KVQVGYGLTESSPVI-AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD  495 (641)
Q Consensus       417 ~v~~~yG~tE~~~~~-~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~  495 (641)
                      .+++.||+||..+.. +.|...    .....+-+...+.|+||++++++++|+.|||+++.-            ++..+ 
T Consensus       237 ~~~diYGltE~~g~g~~eC~~~----~glhi~eD~~~~Ei~dP~t~e~l~dge~GelV~T~L------------~~~~~-  299 (438)
T COG1541         237 KAFDIYGLTEGFGPGAGECTER----NGLHIWEDHFIFEIVDPETGEQLPDGERGELVITTL------------TKEGM-  299 (438)
T ss_pred             ceeeccccccccCCcccccccc----cCCCcchhhceeeeecCCcCccCCCCCeeEEEEEec------------cccCc-
Confidence            999999999986553 222221    123345567889999999999999999999999842            22222 


Q ss_pred             CCCccccCceeEEcCCCC-CCCccccCceEEEeccccceEEeCCceeeccHHhHHHHhcCcccc-eEEEEecC---CCce
Q 006530          496 EDGWLNTGDIGWIAPHHS-RGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIR-QIVVIGQD---QRRP  570 (641)
Q Consensus       496 ~~g~~~TGDl~~~~~~~~-~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~-~~~v~g~~---~~~~  570 (641)
                      +---|+|||+..+.+.+| |||.. . -...+.||.+|++.+ .|.+|+|.+||..|.+++.+. +..++...   .+.+
T Consensus       300 PlIRYrtgDit~i~~~~C~cGr~~-~-ri~~I~GR~dD~l~~-~G~~vfp~~ie~~l~~~~~~~~~yqi~~~~~~~~d~L  376 (438)
T COG1541         300 PLIRYRTGDITVILSDPCGCGRTH-R-RIERIEGRSDDMLIV-RGVNVFPSQIERVLLQIPEVTPHYQIILTRNGGLDEL  376 (438)
T ss_pred             ceEEEEcCCeeEecccCCCCCCcc-c-cccccCcccccEEEE-CCEEeCHHHHHHHHhcccCCCceEEEEEecCCCCceE
Confidence            122499999999999888 54433 2 345789999999998 899999999999999999998 55555443   4567


Q ss_pred             EEEEecCH
Q 006530          571 GAIIVPDK  578 (641)
Q Consensus       571 ~a~vv~~~  578 (641)
                      .+.|++.+
T Consensus       377 ~V~vE~~~  384 (438)
T COG1541         377 TVRVELEN  384 (438)
T ss_pred             EEEEEecC
Confidence            77777753

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.89  E-value=4.9e-22  Score=194.41  Aligned_cols=216  Identities=12%  Similarity=0.017  Sum_probs=154.6

Q ss_pred             hhhhhhhhhhhhhcc-cC--CceEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEEe
Q 006530           29 RNCVDAVATRIRISR-RN--HRFRVFCESKLEQEILDFAEGLRV-IGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVV  104 (641)
Q Consensus        29 ~~~~~~~~~~~a~~~-~~--~~~~~~Ty~eL~~~~~~lA~~L~~-~Gl~~Gd~Vai~~~n~~e~i~~~lA~~~~G~~~v~  104 (641)
                      ++.+..+|+|++++. ++  ++-+++||+||.++++++|+.|.+ .|+++||+|+|+++|+++++++++||+++|++++|
T Consensus         3 ~~~~~~~p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~vp   82 (227)
T TIGR03089         3 SPLLAADPASPRLTFYDDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVVL   82 (227)
T ss_pred             hhhhhhCCCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEe
Confidence            556677889998863 22  234679999999999999999998 79999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhhh
Q 006530          105 RGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESR  184 (641)
Q Consensus       105 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (641)
                      +|             .++++++++++ +....+.     ..  +.++.+...................|.+.+...... 
T Consensus        83 ~n-------------~s~a~~~v~~~-~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  140 (227)
T TIGR03089        83 AG-------------DPDADVVVTGP-DRLAAAA-----GS--GEVVALSLDPLGRRVAGELPPGVIDFAPEVRVHGDQ-  140 (227)
T ss_pred             CC-------------CCCCCEEEeCc-chhhhcc-----cC--CceEEEeccccccCCCCCCCCcccchhhhhhccCCC-
Confidence            95             68899999985 4444432     11  223322111000000000001123454444321111 


Q ss_pred             cccCCCchhhcccccC-CCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhhcCCCCCCEEEEECChhhHHHHHH
Q 006530          185 KAFSDSNDARKHYKYE-TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC  263 (641)
Q Consensus       185 ~~~~~~~~~~~~~~~~-~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~  263 (641)
                                  ..+. ...++|++.++|||||         +|++++...    ...++.++|+++ .+|++|.+|+..
T Consensus       141 ------------~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~~  194 (227)
T TIGR03089       141 ------------FAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFLA  194 (227)
T ss_pred             ------------CCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHHH
Confidence                        0111 3466899999999986         566665544    456789999999 999999999975


Q ss_pred             -hHhhhhcCeeEEe---cchHHHHHHHhhhCCe
Q 006530          264 -GYFIFSRGIELMY---TAVRNLKDDLQRYQPH  292 (641)
Q Consensus       264 -~~~~l~~G~~~v~---~~~~~~~~~i~~~~~t  292 (641)
                       .+.++..|+++++   +++..+++.++++|+|
T Consensus       195 ~~~~~l~~G~t~v~~~rFd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       195 TLLAPLAAGGSLVLVTHPDPARLDQIAETERVT  227 (227)
T ss_pred             HHHHHhccCceEEEecCCCHHHHHHHHHhhcCC
Confidence             6677999999998   4789999999999986

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.74  E-value=7.7e-16  Score=163.15  Aligned_cols=260  Identities=16%  Similarity=0.122  Sum_probs=165.9

Q ss_pred             EEEEEeCCCCCCCchhHHhhHHHHHHHHHH-Hhh--hcCCCCCCEEEEECC-hhhHHHHHHhHhhhhc-CeeEEe----c
Q 006530          207 IATYVYTSGTTGNPKGVMLTHKNLLHQIRS-LYD--IVPAENGDKFLSMLP-PWHVYERACGYFIFSR-GIELMY----T  277 (641)
Q Consensus       207 ~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~-~~~--~~~~~~~d~~l~~~p-l~~~~g~~~~~~~l~~-G~~~v~----~  277 (641)
                      -..+..||||||.|-.+..+.......... +..  ..+...++++...+. -.+.+.      .+.. ...+-.    -
T Consensus       101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~~ly~------~~~~~~~~~~~~~l~~  174 (430)
T TIGR02304       101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADNNLYQ------SVNNRWISLDFFDLLA  174 (430)
T ss_pred             cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccChhHHH------HHHhccceeeecCCCc
Confidence            345677999999999999888755322222 111  224555666555421 111111      1111 111111    3


Q ss_pred             chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhHhcccccccCCCCchhHHH
Q 006530          278 AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  357 (641)
Q Consensus       278 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (641)
                      +.+..++.+++++|+++.++|+.+..|++..++...+                                           
T Consensus       175 ~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~-------------------------------------------  211 (430)
T TIGR02304       175 PFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT-------------------------------------------  211 (430)
T ss_pred             CHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-------------------------------------------
Confidence            4678999999999999999999999998865543210                                           


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecCCCChhHHHHH-HHcCCeeeeccccccccCeeeecCC
Q 006530          358 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAIGVKVQVGYGLTESSPVIAARRP  436 (641)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~~l~~~l~~~~-~~~~~~v~~~yG~tE~~~~~~~~~~  436 (641)
                                                       -..+.++++||.+++..++.. +.||++|++.||+|| |.++..+..
T Consensus       212 ---------------------------------~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~la~eC~~  257 (430)
T TIGR02304       212 ---------------------------------IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFLASTCRC  257 (430)
T ss_pred             ---------------------------------CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hheEEecCC
Confidence                                             012889999999999986654 567999999999999 544433321


Q ss_pred             CCCcccccccCcCCcEEE--EeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccCCCCccccCceeEEcCCCC-
Q 006530          437 TCNVLGSVGHPINHTEIK--IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHS-  513 (641)
Q Consensus       437 ~~~~~~~~G~~~~~~~v~--i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~-  513 (641)
                           +.+..--..+-++  ++|++ ++       ++.+|++-            +..++ +---|+|||++.+.+.+| 
T Consensus       258 -----g~lHl~ed~~~vE~~ivD~~-~~-------~~~ViT~L------------~n~~~-PlIRYrtGD~~~~~~~~C~  311 (430)
T TIGR02304       258 -----GTLHLNEDLVHIEKQYLDEH-KR-------FVPIITDF------------TRTTQ-PIVRYRLNDILVESEQPCS  311 (430)
T ss_pred             -----CCEEEccccEEEEeeEECCC-Cc-------eEEEEecC------------CCccc-eEEeeeCCCEEEeCCCCCC
Confidence                 2222222233344  77754 22       34566631            11111 122399999999887777 


Q ss_pred             CCCccccCceE-EEeccccceEEe--CCcee--eccHHhHHH-HhcCcccceEEEEecCCCceEEEEecCH
Q 006530          514 RGRSRRCGGVL-VLEGRAKDTIVL--STGEN--VEPLELEEA-ALRSSLIRQIVVIGQDQRRPGAIIVPDK  578 (641)
Q Consensus       514 ~~~~~~~~G~l-~i~GR~~d~i~~--~~G~~--v~p~~iE~~-l~~~p~V~~~~v~g~~~~~~~a~vv~~~  578 (641)
                      ||+..+   .| .|.||.+|++++  .+|..  ++|..++.. +...++|.+..++....+.+...+++..
T Consensus       312 CGr~~~---~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q~~~~~l~v~~~~~~  379 (430)
T TIGR02304       312 CGSATM---AIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQTGSAQLELIADCEL  379 (430)
T ss_pred             CCCccc---ccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEEccCCeEEEEEEeCh
Confidence            554322   34 488999999984  35555  499999887 4468999999999887777777777643

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.72  E-value=2.4e-16  Score=172.58  Aligned_cols=427  Identities=16%  Similarity=0.201  Sum_probs=281.3

Q ss_pred             cccCCceEEEeHHHHHHHHHHHHH-HHHHcCCCCCCEEEEEcCCC--hhHHHHHHHHHhcCCEEEecCCCCCHHHHHHHH
Q 006530           42 SRRNHRFRVFCESKLEQEILDFAE-GLRVIGVKPEEKLSLFSDNS--CRWLVADQGMLATGAINVVRGSRSSSEELLHIY  118 (641)
Q Consensus        42 ~~~~~~~~~~Ty~eL~~~~~~lA~-~L~~~Gl~~Gd~Vai~~~n~--~e~i~~~lA~~~~G~~~v~l~~~~~~~~l~~~l  118 (641)
                      +++.|...++||..+..|+.+.|+ .|.+-|++++|+|.+++..+  .|+++..++|...|.+++|+++..+.+++..++
T Consensus       116 id~kgk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc~l~g~~~vp~~e~~s~~el~~i~  195 (1363)
T KOG3628|consen  116 IDKKGKATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGCFLLGIVAVPLSELSSSEELKDIV  195 (1363)
T ss_pred             EcCCCceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhccccccceeeccchhhhhhhhhhccc
Confidence            344555899999999999999999 67778999999999988665  899999999999999999999999999999999


Q ss_pred             HhcCceEEEecChhhHHHHHHhhcccccccEEEEEeCCCCCCCCCccCCCCcccHHHHHHhhhhhhcccCCCchhhcccc
Q 006530          119 NHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYK  198 (641)
Q Consensus       119 ~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (641)
                      +..+.+++++.++......... . ...+...+.                 ++...++-  +....+       .   ..
T Consensus       196 ~~~~~~~~l~t~a~~r~~~~~~-~-~~s~~k~v~-----------------~w~t~~~k--~~~~~~-------k---~~  244 (1363)
T KOG3628|consen  196 NPTPERVALTTEAGERAFINDN-S-PVSLAKAVA-----------------WWKTNDFK--GNYTKD-------K---IK  244 (1363)
T ss_pred             CCCccceEeehhhhHHHhhhcc-C-cccHHHHHH-----------------hhhccccc--ceeehh-------h---cc
Confidence            9999999999864332222111 0 001100000                 00000000  000000       0   00


Q ss_pred             cCCCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHH---------------H-----hhhcCCCCCCEEEEECChhhH
Q 006530          199 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRS---------------L-----YDIVPAENGDKFLSMLPPWHV  258 (641)
Q Consensus       199 ~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~---------------~-----~~~~~~~~~d~~l~~~pl~~~  258 (641)
                      -+...-. ..+|-||.+.+|.--|++.+|+ ++.+.+.               +     ...++....+.++..+.+..-
T Consensus       245 ~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~~~~~s~~  322 (1363)
T KOG3628|consen  245 KPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVLLTNLDPSQQ  322 (1363)
T ss_pred             CCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcccceeeccCcccc
Confidence            0111122 7899999999999999999997 5443332               2     122334456777888888888


Q ss_pred             HHHHH-hHhhhhcCeeEEec------chHHHHHHHhhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhH
Q 006530          259 YERAC-GYFIFSRGIELMYT------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISF  331 (641)
Q Consensus       259 ~g~~~-~~~~l~~G~~~v~~------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (641)
                      .|+++ ++.++..|.+.+..      ++..+.+.+.++|.+++..-...+.+..-..+.                     
T Consensus       323 lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~---------------------  381 (1363)
T KOG3628|consen  323 LGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQE---------------------  381 (1363)
T ss_pred             cchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccC---------------------
Confidence            88876 56779999988875      367888999999999887754444332221111                     


Q ss_pred             HHHHHHhHhcccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhcCCceeEEeecCCCChhH---
Q 006530          332 AYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQ-SAIGISKAGVSGGGSLPMHI---  407 (641)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~r~i~~gG~~l~~~l---  407 (641)
                                      .+                            .-.+.|.+.. -+++++|.+.+.-..+..+.   
T Consensus       382 ----------------~p----------------------------~a~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~i  417 (1363)
T KOG3628|consen  382 ----------------DP----------------------------KATLSFKKYKTPDLSSLKGCMVTCTAVDTEFQEI  417 (1363)
T ss_pred             ----------------Cc----------------------------ccccchhhccCCCccceeeeEEeeeecchHHHHH
Confidence                            00                            0011222322 47788888888888887765   


Q ss_pred             --HHHHHHcC---Ceeee---------------ccccccccCeeeecCCCC-----------------------------
Q 006530          408 --DLFYEAIG---VKVQV---------------GYGLTESSPVIAARRPTC-----------------------------  438 (641)
Q Consensus       408 --~~~~~~~~---~~v~~---------------~yG~tE~~~~~~~~~~~~-----------------------------  438 (641)
                        .+|++.+|   .++..               .=+++|++......+...                             
T Consensus       418 vs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is  497 (1363)
T KOG3628|consen  418 VSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDIS  497 (1363)
T ss_pred             HHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEEEcchhhhh
Confidence              44444332   11111               112345444433322200                             


Q ss_pred             -CcccccccCcC-CcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchhhhhccC------------CCCccccCc
Q 006530          439 -NVLGSVGHPIN-HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD------------EDGWLNTGD  504 (641)
Q Consensus       439 -~~~~~~G~~~~-~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~------------~~g~~~TGD  504 (641)
                       ..+..+|+..| ++.+.++++++...|.++++|||||.++++..+|+.-+..|...|.            ...|.|||-
T Consensus       498 ~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGL  577 (1363)
T KOG3628|consen  498 SLSVKDVLCIMPGDATLAVVNPDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGL  577 (1363)
T ss_pred             hcCccccceecccceEEEEeCCCcccccccCcceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhcc
Confidence             01123555555 4677888999999999999999999999999999988888877772            123899999


Q ss_pred             eeEEcCCCCCCCccccCceEEEeccccceEEeCCceeeccHH----------hHHHHhcCcccceEEEEecCCCceEEEE
Q 006530          505 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLE----------LEEAALRSSLIRQIVVIGQDQRRPGAII  574 (641)
Q Consensus       505 l~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~----------iE~~l~~~p~V~~~~v~g~~~~~~~a~v  574 (641)
                      +|++.+           |.++|+|-++|.+.--.|..+...+          |+.+++..+.|.++.++-  ++++..++
T Consensus       578 lGFv~~-----------gki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~--~E~~~Vv~  644 (1363)
T KOG3628|consen  578 LGFVHN-----------GKIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE--DEHIVVVV  644 (1363)
T ss_pred             eeeeeC-----------CeEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee--cceEEEEE
Confidence            999998           6688887777766543555543332          566677789999998887  66677766


Q ss_pred             ecCHH
Q 006530          575 VPDKE  579 (641)
Q Consensus       575 v~~~~  579 (641)
                      +-++.
T Consensus       645 ~esP~  649 (1363)
T KOG3628|consen  645 LESPD  649 (1363)
T ss_pred             EeCcc
Confidence            66654

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.57  E-value=6.8e-15  Score=152.43  Aligned_cols=103  Identities=15%  Similarity=0.105  Sum_probs=91.1

Q ss_pred             CCCccccCceeEE-cCCCCCCCccccCceEEEeccccceEEeCCc---eeeccHHhHHHHhcCcccceEEEEecCCC---
Q 006530          496 EDGWLNTGDIGWI-APHHSRGRSRRCGGVLVLEGRAKDTIVLSTG---ENVEPLELEEAALRSSLIRQIVVIGQDQR---  568 (641)
Q Consensus       496 ~~g~~~TGDl~~~-~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G---~~v~p~~iE~~l~~~p~V~~~~v~g~~~~---  568 (641)
                      .+|||+|||+|++ |+          ||+++|.||.+      +|   ++|+|. ||++|.+||+|.||+|+|.+++   
T Consensus       207 ~dgW~~TGDlg~~~d~----------dG~l~~~gR~~------~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~g  269 (365)
T PRK09188        207 SRIWLATGKKVYNFIT----------RGLFSWSDGEG------TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKG  269 (365)
T ss_pred             cCcEEeCCCEEEEEcC----------CCeEEEEecCc------CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCC
Confidence            5899999999998 68          89999999986      67   899999 9999999999999999998765   


Q ss_pred             -ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCcc
Q 006530          569 -RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  639 (641)
Q Consensus       569 -~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l  639 (641)
                       .+.|+|++..                  ..+.++++++++++|+. +     .|++|.++++.|.+.+||+
T Consensus       270 e~v~A~Vv~~~------------------~~~~~el~~~l~~~L~~-k-----vP~~v~~v~~lP~t~~GKi  317 (365)
T PRK09188        270 VGLYAFVEAEL------------------PADEKSLRARLAGAKPP-K-----PPEHIQPVAALPRDADGTV  317 (365)
T ss_pred             eEEEEEEEECC------------------CCCHHHHHHHHHhhchh-c-----CCcEEEEECCCCCCCCCCc
Confidence             4557777641                  34678999999999999 8     7888999999999999997

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=98.94  E-value=5.4e-08  Score=101.27  Aligned_cols=244  Identities=20%  Similarity=0.274  Sum_probs=137.7

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhHHhhHHHHHHHHHHHhhh----cCCCCC-CEEEEECChhh---HHHHH-H-hHhhhhc
Q 006530          201 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI----VPAENG-DKFLSMLPPWH---VYERA-C-GYFIFSR  270 (641)
Q Consensus       201 ~~~~~~~a~i~~TSGTTG~pK~v~~sh~~l~~~~~~~~~~----~~~~~~-d~~l~~~pl~~---~~g~~-~-~~~~l~~  270 (641)
                      ...++++..++.||||||.|--+.+.+..+..+...+...    .+.... -.++...|-..   .++.. . ....+..
T Consensus        85 S~~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~  164 (365)
T PF04443_consen   85 SVPEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFF  164 (365)
T ss_pred             ecChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhccc
Confidence            3456778889999999999865666555444443332222    222222 22333333221   11111 1 1222344


Q ss_pred             CeeEEec----chHHHHHHH----hhhCCeEEEeCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHhHhcc
Q 006530          271 GIELMYT----AVRNLKDDL----QRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEG  342 (641)
Q Consensus       271 G~~~v~~----~~~~~~~~i----~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (641)
                      +....+-    +.+.+...+    .+.+|..+++.|.++..+...++++...                            
T Consensus       165 ~~~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~----------------------------  216 (365)
T PF04443_consen  165 GSRFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIR----------------------------  216 (365)
T ss_pred             CceeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCc----------------------------
Confidence            4443331    344444433    4567889999999887776665544211                            


Q ss_pred             cccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEeecC-------CCC-hhHHHHH-HH
Q 006530          343 FCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGG-------SLP-MHIDLFY-EA  413 (641)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gG~-------~l~-~~l~~~~-~~  413 (641)
                                                                   -.++....++-||+       .++ +++.+.. +.
T Consensus       217 ---------------------------------------------~~L~~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~  251 (365)
T PF04443_consen  217 ---------------------------------------------FRLPKGSIVIHGGGWKGRRKEAVSREEFYARLQEV  251 (365)
T ss_pred             ---------------------------------------------ccCCCCCEEEeCCCCCccccCccCHHHHHHHHHHH
Confidence                                                         11111123444544       233 2344434 44


Q ss_pred             cCC----eeeeccccccccCeeeecCCCCCcccccccCcCCcEEEEeeCCCCccCCCCCCceEEEecCcccccccCCchh
Q 006530          414 IGV----KVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSA  489 (641)
Q Consensus       414 ~~~----~v~~~yG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~  489 (641)
                      +|+    .+++.||+||.......+..     +..  +.|.. +.|.||++.++++.|+.|-|-+-.+... .       
T Consensus       252 ~Gv~~~~~i~~~ygmtEl~s~~~~~~~-----~~~--~~p~w-V~iRDp~tl~~~~~Ge~Gli~vidl~~~-s-------  315 (365)
T PF04443_consen  252 FGVIPIENIYDMYGMTELNSQAYECGH-----GHF--HVPPW-VIIRDPETLEPLPPGETGLIQVIDLANT-S-------  315 (365)
T ss_pred             HCCCCHHHeeeeeeccccchhheeCCC-----Ccc--cCCCe-EEEECCCCCcCCCCCCeeEEEEEccccc-C-------
Confidence            787    69999999997655443311     112  23322 7777999999999999999988755432 1       


Q ss_pred             hhhccCCCCccccCceeEEcCCCCCC-CccccCceEEEeccccceEEeCCceeecc
Q 006530          490 TKQALDEDGWLNTGDIGWIAPHHSRG-RSRRCGGVLVLEGRAKDTIVLSTGENVEP  544 (641)
Q Consensus       490 ~~~~~~~~g~~~TGDl~~~~~~~~~~-~~~~~~G~l~i~GR~~d~i~~~~G~~v~p  544 (641)
                            ..+..-|.|+|.+...++|+ +.   ..++.++||.+.-= + +|.....
T Consensus       316 ------~p~~IlTeDlGvl~~~~~c~cr~---g~~f~vlGR~~~ae-~-RGCs~~~  360 (365)
T PF04443_consen  316 ------YPGFILTEDLGVLHGDDDCGCRK---GKYFEVLGRADGAE-I-RGCSLTF  360 (365)
T ss_pred             ------CCcEEEEcceeeecCCCCCCCcc---CCEEEEEeCCCCCc-c-CCcHHHH
Confidence                  13457799999887754433 32   24799999987644 3 6766533

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=98.55  E-value=7.3e-06  Score=90.32  Aligned_cols=159  Identities=18%  Similarity=0.210  Sum_probs=89.9

Q ss_pred             hcCCce-eEEeecCCCChhHHHHHHHcC-Ce-eeeccccccccCeeeecCCCCCcccccccCcCCc-EEEEeeCCC----
Q 006530          389 AIGISK-AGVSGGGSLPMHIDLFYEAIG-VK-VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHT-EIKIVDAET----  460 (641)
Q Consensus       389 ~l~~~r-~i~~gG~~l~~~l~~~~~~~~-~~-v~~~yG~tE~~~~~~~~~~~~~~~~~~G~~~~~~-~v~i~d~~~----  460 (641)
                      -.+.++ +.+.+|+....-..++.+.+| +. +..+|++||+  ++..+.. ....+  +...++. -.+.++.+.    
T Consensus       265 lWP~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg--~i~i~~~-~~~~~--~~l~~~~~ffEFip~~~~~~~  339 (528)
T PF03321_consen  265 LWPNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEG--FIGIPLD-PEDPG--YVLAPDSGFFEFIPVDEDEQN  339 (528)
T ss_dssp             HSTT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTE--EEEEES--CCC----EEE-TTSSEEEEEE-STT---
T ss_pred             hCCCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccce--EEEEecC-CCCCc--eEeecCCeEEEEEeccCCccc
Confidence            345557 556666666777777777774 33 4568999996  3333332 11111  2222221 223333221    


Q ss_pred             ----C-----ccCCCCCCceEEEecCcccccccCCchhhhhccCCCCccccCceeEEcCCCCCCCccccCc--eEEEecc
Q 006530          461 ----N-----EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGG--VLVLEGR  529 (641)
Q Consensus       461 ----~-----~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G--~l~i~GR  529 (641)
                          .     ..+..|+.-||++++.+   |.|              -|+.||++++..-        .++  .+.|+||
T Consensus       340 ~~~~~~~l~~~ele~G~~YelviTt~~---GLy--------------RY~iGDvVrv~gf--------~~~~P~i~F~~R  394 (528)
T PF03321_consen  340 PSEQPKTLLLHELEVGEEYELVITTNS---GLY--------------RYRIGDVVRVTGF--------YNQTPRIEFVGR  394 (528)
T ss_dssp             ----SSSEEGGG--TT-EEEEEEESTT---S-S--------------SEEECEEEEEEEE--------ETTEEEEEEEEE
T ss_pred             ccCCCceecHHHhcCCCeEEEEEeccc---cee--------------eeecCCEEEEeec--------cCCCcEEEEecc
Confidence                1     23457788899998421   211              2999999988651        123  7999999


Q ss_pred             ccceEEeCCceeeccHHhHHHHhcC-----cccceEEEEec----CCCceEEEEecCH
Q 006530          530 AKDTIVLSTGENVEPLELEEAALRS-----SLIRQIVVIGQ----DQRRPGAIIVPDK  578 (641)
Q Consensus       530 ~~d~i~~~~G~~v~p~~iE~~l~~~-----p~V~~~~v~g~----~~~~~~a~vv~~~  578 (641)
                      .+.++.+ .|++++-.++++++.+.     -.+.+..+...    ..++...++.+..
T Consensus       395 ~~~~l~l-~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~~  451 (528)
T PF03321_consen  395 RGQVLSL-FGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELEG  451 (528)
T ss_dssp             TTEEE-S-SS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEECS
T ss_pred             CCceeec-ceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeCC
Confidence            9999998 99999999999988875     44567777765    3345666777653

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=98.44  E-value=2.9e-07  Score=72.67  Aligned_cols=68  Identities=18%  Similarity=0.083  Sum_probs=53.8

Q ss_pred             HhHHHHhcCcccceEEEEecCCC----ceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhHhccCCCc
Q 006530          546 ELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQ  621 (641)
Q Consensus       546 ~iE~~l~~~p~V~~~~v~g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~  621 (641)
                      |||+++.+||+|.||+|++.+++    .+.|+|++                      +.++|+++++++|+.|+.|.   
T Consensus         1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~----------------------~~~~i~~~~~~~l~~~~~P~---   55 (73)
T PF13193_consen    1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL----------------------DEEEIRDHLRDKLPPYMVPR---   55 (73)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE----------------------HHHHHHHHHHHHS-GGGS-S---
T ss_pred             CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe----------------------eecccccchhhhCCCcceee---
Confidence            79999999999999999998654    56788886                      22889999999999999551   


Q ss_pred             cccEEEecC-CCCCCCCc
Q 006530          622 IGPIHVVDE-PFTVNFLC  638 (641)
Q Consensus       622 ~~~i~~~~~-~~~~~~~~  638 (641)
                      -..|+.+++ .|.+.|||
T Consensus        56 ~~~~v~~~~~lP~t~~GK   73 (73)
T PF13193_consen   56 RIRFVRLDEELPRTPSGK   73 (73)
T ss_dssp             EEEEEEESSSEEBETTSS
T ss_pred             EEEEccccCcCCCCCCCC
Confidence            145555566 99999997

...

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=98.09  E-value=0.00056  Score=75.06  Aligned_cols=65  Identities=15%  Similarity=0.214  Sum_probs=47.9

Q ss_pred             CCCCCCceEEEecCcccccccCCchhhhhccCCCC--ccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCcee
Q 006530          464 LPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG--WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGEN  541 (641)
Q Consensus       464 ~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g--~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~  541 (641)
                      +..|+.-||+|+.-                   .|  -|+.||+.++..=      .+..-.+.|++|.+.+..+ .|+|
T Consensus       404 v~~G~~YelvvTt~-------------------~GLyRYrlGDvv~V~Gf------~n~~P~~~Fv~R~~~~lsi-~gEK  457 (612)
T PLN02620        404 VKLGQEYELVVTTY-------------------AGLYRYRVGDVLRVAGF------KNKAPQFSFICRKNVVLSI-DSDK  457 (612)
T ss_pred             ccCCCeEEEEEEec-------------------CceEEEecCCEEEEeee------cCCCceEEEEeecCceeec-cccc
Confidence            45677788999731                   23  2999999977641      1113569999999998887 9999


Q ss_pred             eccHHhHHHHhcC
Q 006530          542 VEPLELEEAALRS  554 (641)
Q Consensus       542 v~p~~iE~~l~~~  554 (641)
                      .+-.++-.++.+.
T Consensus       458 ~tE~~l~~Av~~a  470 (612)
T PLN02620        458 TDEVELQNAVKNA  470 (612)
T ss_pred             CCHHHHHHHHHHH
Confidence            9998887777653

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=97.98  E-value=0.00078  Score=74.07  Aligned_cols=65  Identities=14%  Similarity=0.121  Sum_probs=48.3

Q ss_pred             CCCCCCceEEEecCcccccccCCchhhhhccCCCC--ccccCceeEEcCCCCCCCccccCceEEEeccccceEEeCCcee
Q 006530          464 LPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG--WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGEN  541 (641)
Q Consensus       464 ~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g--~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~  541 (641)
                      +..|+.-||+|+.                   ..|  -|+.||+.++..-      .+..-.+.|++|.+.+..+ .|+|
T Consensus       398 vk~G~~YelVvTt-------------------~~GLYRYrlGDvv~V~GF------~n~~P~~~Fv~R~~~vlsi-~gEK  451 (606)
T PLN02247        398 VKVGHYYELVVTT-------------------FTGLYRYRVGDILMVTGF------YNNAPQFRFVQRRNVVLSI-DTDK  451 (606)
T ss_pred             ccCCCeEEEEEEe-------------------cCceEEEecCCEEEEeee------cCCCceEEEEecCCceeec-cccc
Confidence            4567777888873                   123  2999999977641      1113569999999999988 9999


Q ss_pred             eccHHhHHHHhcC
Q 006530          542 VEPLELEEAALRS  554 (641)
Q Consensus       542 v~p~~iE~~l~~~  554 (641)
                      .+-.++-.++.+.
T Consensus       452 ~tE~~l~~Av~~a  464 (606)
T PLN02247        452 TNEEDLLKAVTQA  464 (606)
T ss_pred             CCHHHHHHHHHHH
Confidence            9999988777663

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=97.94  E-value=0.00082  Score=74.52  Aligned_cols=131  Identities=14%  Similarity=0.116  Sum_probs=76.4

Q ss_pred             ceeEEeecCCCChhHHHHHHHc-CC-eeeeccccccccCeeeecCCCCCcccccccC--cCCcEEEEeeC-CC-------
Q 006530          393 SKAGVSGGGSLPMHIDLFYEAI-GV-KVQVGYGLTESSPVIAARRPTCNVLGSVGHP--INHTEIKIVDA-ET-------  460 (641)
Q Consensus       393 ~r~i~~gG~~l~~~l~~~~~~~-~~-~v~~~yG~tE~~~~~~~~~~~~~~~~~~G~~--~~~~~v~i~d~-~~-------  460 (641)
                      +.++..||..  +-...+...+ +. .+...|++||+-  +..+......+...+..  +.+.-.+.++- +.       
T Consensus       307 i~~~~~G~~~--~Y~~~l~~~~g~~~~~~~~Y~ASEg~--~gi~~~~~~~p~~~~~~l~~~~~ffEFiP~~~~~~~~~~~  382 (597)
T PLN02249        307 LDVIVTGAMA--QYIPMLEYYSGGLPMASTIYASSESY--FGINLNPMCKPSEVSYTIMPNMAYFEFLPHNHDGDGALDE  382 (597)
T ss_pred             EEEEecCChH--HHHHHHHHHcCCCccccccccccceE--EEeecCCCCCCCCcceEecCCcEEEEeeecccCCcccCCC
Confidence            4555555544  3334444444 33 356689999963  33322211112212211  12333333321 10       


Q ss_pred             -----CccCCCCCCceEEEecCcccccccCCchhhhhccCCCC--ccccCceeEEcCCCCCCCccccCceEEEeccccce
Q 006530          461 -----NEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG--WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDT  533 (641)
Q Consensus       461 -----~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g--~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~  533 (641)
                           -..+..|+.-+|+|+..                   .|  -|+.||+.++..-..      ..-.|.|+||.+.+
T Consensus       383 ~~~v~l~eVe~G~~Y~lVvTT~-------------------~GLyRY~iGDvVrvtgf~~------~~P~i~F~gR~~~~  437 (597)
T PLN02249        383 TSLVELADVEVGKEYELVITTY-------------------AGLYRYRVGDILRVTGFHN------SAPQFKFIRRKNVL  437 (597)
T ss_pred             CcEecHHHcCCCCeEEEEEEcc-------------------cceeEeecCCEEEEeeccC------CCcEEEEEccCCcc
Confidence                 11335677778888731                   23  299999998876210      02469999999999


Q ss_pred             EEeCCceeeccHHhHHHHhc
Q 006530          534 IVLSTGENVEPLELEEAALR  553 (641)
Q Consensus       534 i~~~~G~~v~p~~iE~~l~~  553 (641)
                      +.+ .|+++.-.+++.++.+
T Consensus       438 ls~-~GEKl~e~~v~~Av~~  456 (597)
T PLN02249        438 LSI-ESDKTDEADLQKAVEN  456 (597)
T ss_pred             eec-ccccCCHHHHHHHHHH
Confidence            997 9999999999988876

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=93.51  E-value=0.6  Score=49.51  Aligned_cols=95  Identities=17%  Similarity=0.157  Sum_probs=75.2

Q ss_pred             eEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--hhHHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCceE
Q 006530           48 FRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNS--CRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVA  125 (641)
Q Consensus        48 ~~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~--~e~i~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~  125 (641)
                      .--+|+.|+...+..+|+.|...|..+||+|.+...-+  ..-+...+|+.++|+.++|+.+. .-+....++++.++++
T Consensus       107 ~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tv  185 (438)
T COG1541         107 VFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTV  185 (438)
T ss_pred             eeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcE
Confidence            35689999999999999999999999999998887722  12267889999999999999884 4455677899999998


Q ss_pred             EEecChhhHHHHHHhhccc
Q 006530          126 LAVENPEFFNRIAETLCSK  144 (641)
Q Consensus       126 li~~~~~~~~~~~~~~~~~  144 (641)
                      +.+. +.+.-.+.+...+.
T Consensus       186 I~~t-ps~~l~lae~~~~~  203 (438)
T COG1541         186 IAAT-PSYLLYLAEEAEEE  203 (438)
T ss_pred             EEEC-hHHHHHHHHHHHHc
Confidence            8887 45555555555444

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=89.81  E-value=0.92  Score=37.57  Aligned_cols=75  Identities=12%  Similarity=0.072  Sum_probs=46.5

Q ss_pred             ceeeccHHhHHHHhcCcccc-eEEEEec---CCCceEEEEecCHHHHHHHHHHcCCCCCChhhcChHHHHHHHHHHHHhH
Q 006530          539 GENVEPLELEEAALRSSLIR-QIVVIGQ---DQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKW  614 (641)
Q Consensus       539 G~~v~p~~iE~~l~~~p~V~-~~~v~g~---~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  614 (641)
                      |.+|+|.+||+++.++|++. +..++-.   ..+.+...|.++++.             .......+++.+.+.++|...
T Consensus         1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~-------------~~~~~~~~~l~~~i~~~lk~~   67 (96)
T PF14535_consen    1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGF-------------SDDAEDLEALAERIAERLKER   67 (96)
T ss_dssp             TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTC-------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred             CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCcc-------------CcchHHHHHHHHHHHHHHHhh
Confidence            78999999999999999998 6655533   234566777776531             000123566777777777665


Q ss_pred             hccCCCccccEEEecC
Q 006530          615 TSKCSFQIGPIHVVDE  630 (641)
Q Consensus       615 ~~~~~~~~~~i~~~~~  630 (641)
                      ..   .++ ++.+++.
T Consensus        68 lg---v~~-~V~lv~~   79 (96)
T PF14535_consen   68 LG---VRP-EVELVPP   79 (96)
T ss_dssp             HS---S-E-EEEEE-T
T ss_pred             cC---ceE-EEEEECC
Confidence            42   233 4666653

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=82.11  E-value=17  Score=38.98  Aligned_cols=89  Identities=13%  Similarity=0.133  Sum_probs=65.3

Q ss_pred             EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCh--hHHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCceEE
Q 006530           49 RVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSC--RWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVAL  126 (641)
Q Consensus        49 ~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~--e~i~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l  126 (641)
                      -.+|..++......+++.+...|+++||++....+.+.  ......+++...|+.++++++.. .+.+...++..+++.+
T Consensus        93 v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l  171 (422)
T TIGR02155        93 VGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQLIQDFKPDII  171 (422)
T ss_pred             eccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHHHHHHCCCEE
Confidence            34577777777777778888889999999988665543  22334677889999999887654 5777889999999998


Q ss_pred             EecChhhHHHHHH
Q 006530          127 AVENPEFFNRIAE  139 (641)
Q Consensus       127 i~~~~~~~~~~~~  139 (641)
                      +... .....+.+
T Consensus       172 ~~~P-s~l~~L~~  183 (422)
T TIGR02155       172 MVTP-SYMLNLLE  183 (422)
T ss_pred             EEcH-HHHHHHHH
Confidence            8874 55554443

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=80.70  E-value=23  Score=38.52  Aligned_cols=79  Identities=6%  Similarity=0.054  Sum_probs=60.6

Q ss_pred             EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChh--HHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCceEE
Q 006530           49 RVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCR--WLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVAL  126 (641)
Q Consensus        49 ~~~Ty~eL~~~~~~lA~~L~~~Gl~~Gd~Vai~~~n~~e--~i~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l  126 (641)
                      ..+|..++...+...++.+...|+.+||++.+..+.+..  .....+++.++|+.+++...   ......+++..++..+
T Consensus       104 v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l  180 (445)
T TIGR03335       104 FFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGI  180 (445)
T ss_pred             eeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEE
Confidence            457889999888888888888899999999998876643  23456788999998876543   2344677888999988


Q ss_pred             EecC
Q 006530          127 AVEN  130 (641)
Q Consensus       127 i~~~  130 (641)
                      +...
T Consensus       181 ~~~p  184 (445)
T TIGR03335       181 VASV  184 (445)
T ss_pred             EECH
Confidence            7753

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	641
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		2e-14
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		5e-14
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		1e-13
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		3e-13
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		3e-13
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		3e-13
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		3e-13
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		3e-13
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		3e-13
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		4e-12
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		2e-11
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		7e-11
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		2e-09
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		3e-09
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		7e-04
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		1e-08
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		1e-08
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		2e-08
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		2e-08
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		3e-08
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		3e-07
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		7e-07
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		9e-07
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		2e-06
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		2e-06
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		2e-06
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		2e-06
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		3e-06
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		8e-06
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		2e-05
3kxw_A	590	The Crystal Structure Of Fatty Acid Amp Ligase From		2e-05
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		9e-05
3vnq_A	544	Co-crystal Structure Of Nrps Adenylation Protein Cy		1e-04
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		1e-04
2wd9_A	569	Crystal Structure Of Human Acyl-coa Synthetase Medi		4e-04
3b7w_A	570	Crystal Structure Of Human Acyl-Coa Synthetase Medi		4e-04
1amu_A	563	Phenylalanine Activating Domain Of Gramicidin Synth		5e-04
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		9e-04

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 57/91 (62%), Gaps = 5/91 (5%)
Query: 417 KVQVGYGLTESSPVIA-----ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGI 471
           K+  GYG+TE+ PV+A     A+ P     G+ G  + + E+KIVD +T + L     G 
Sbjct: 372 KLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGE 431
Query: 472 VKVRGSQVMQGYFKNPSATKQALDEDGWLNT 502
           + +RG Q+M+GY  NP+AT + +D+DGWL+T
Sbjct: 432 ICIRGHQIMKGYLNNPAATAETIDKDGWLHT 462

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 55/88 (62%), Gaps = 5/88 (5%)
Query: 421 GYGLTESSPVIA-----ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 475
           GYG+TE+ PV+A     A+ P     G+ G  + + E+KIVD ET   LP    G + +R
Sbjct: 329 GYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIR 388
Query: 476 GSQVMQGYFKNPSATKQALDEDGWLNTG 503
           G Q+M+GY  +P AT + +D++GWL+TG
Sbjct: 389 GDQIMKGYLNDPEATSRTIDKEGWLHTG 416

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 418 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 477
           ++ GYGLTE++  I       +  G+VG  +   E K+VD +T + L    +G + VRG 
Sbjct: 341 IRQGYGLTETTSAILITPKGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELSVRGP 400
Query: 478 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 507
            +M GY  NP AT   +D+DGWL++GDI +
Sbjct: 401 MIMSGYVNNPEATNALIDKDGWLHSGDIAY 430

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 418 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 477
           ++ GYGLTE++  I       +  G+VG  +   E K+VD +T + L    +G + VRG 
Sbjct: 336 IRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGP 395
Query: 478 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 507
            +M GY  NP AT   +D+DGWL++GDI +
Sbjct: 396 MIMSGYVNNPEATNALIDKDGWLHSGDIAY 425

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 418 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 477
           ++ GYGLTE++  I       +  G+VG  +   E K+VD +T + L    +G + VRG 
Sbjct: 341 IRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGP 400
Query: 478 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 507
            +M GY  NP AT   +D+DGWL++GDI +
Sbjct: 401 MIMSGYVNNPEATNALIDKDGWLHSGDIAY 430

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 418 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 477
           ++ GYGLTE++  I       +  G+VG  +   E K+VD +T + L    +G + VRG 
Sbjct: 336 IRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGP 395
Query: 478 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 507
            +M GY  NP AT   +D+DGWL++GDI +
Sbjct: 396 MIMSGYVNNPEATNALIDKDGWLHSGDIAY 425

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 56/90 (62%)
Query: 418 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 477
           V+ GYGLTE++  I       +  G+ G  +   + K++D +T + L    +G V V+G 
Sbjct: 338 VRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGP 397
Query: 478 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 507
            +M+GY  NP ATK+ +DE+GWL+TGDIG+
Sbjct: 398 MLMKGYVNNPEATKELIDEEGWLHTGDIGY 427

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 56/90 (62%)
Query: 418 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 477
           V+ GYGLTE++  I       +  G+ G  +   + K++D +T + L    +G V V+G 
Sbjct: 338 VRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGP 397
Query: 478 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 507
            +M+GY  NP ATK+ +DE+GWL+TGDIG+
Sbjct: 398 MLMKGYVNNPEATKELIDEEGWLHTGDIGY 427

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 56/90 (62%)
Query: 418 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 477
           V+ GYGLTE++  I       +  G+ G  +   + K++D +T + L    +G V V+G 
Sbjct: 338 VRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGP 397
Query: 478 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 507
            +M+GY  NP ATK+ +DE+GWL+TGDIG+
Sbjct: 398 MLMKGYVNNPEATKELIDEEGWLHTGDIGY 427

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 418 VQVGYGLTES-SPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 476
           ++ GYGLTE+ S +I   R   +  G+ G  +     KIVD +T + L    +G + V+G
Sbjct: 370 IRQGYGLTETTSAIIITPRGRDDKPGACGKVVPFFSAKIVDLDTGKTLGVNQRGELCVKG 429
Query: 477 SQVMQGYFKNPSATKQALDEDGWLNTGDIGW 507
             +M+GY  NP AT   +D+DGWL++GDI +
Sbjct: 430 PMIMKGYVNNPEATSALIDKDGWLHSGDIAY 460

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 29/201 (14%)
Query: 397 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIA-----------ARRPTCNVLGSVG 445
           V GG + P  +   +E +GV+V+ GYGLTE+SPV+            +      +    G
Sbjct: 299 VVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTG 358
Query: 446 HPINHTEIKIVDAETNEVLPAGSK-GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD 504
            PI    +++ D E   V   G   G V+++G  +  GY+ N  AT+ AL  DG+  TGD
Sbjct: 359 LPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGD 418
Query: 505 IG-WIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVI 563
           I  W                + ++ R KD ++ S GE +              +++  V+
Sbjct: 419 IAVW-----------DEEGYVEIKDRLKD-LIKSGGEWISSVDLENALMGHPKVKEAAVV 466
Query: 564 G----QDQRRPGAIIVPDKEE 580
                + Q RP A++VP  E+
Sbjct: 467 AIPHPKWQERPLAVVVPRGEK 487

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 93/209 (44%), Gaps = 21/209 (10%)
Query: 401 GSLPMHIDLFYE---AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVD 457
           GS P+  D   E     G  V   YG TE++   +       V G+VG  +     ++ D
Sbjct: 276 GSAPLLADTHREWSAKTGHAVLERYGXTETNXNTSNPYDGDRVPGAVGPALPGVSARVTD 335
Query: 458 AETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXX 517
            ET + LP G  G ++V+G  V +GY++ P  TK    +DG+  TGD+G I         
Sbjct: 336 PETGKELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGDLGKI--------- 386
Query: 518 XXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AI 573
                V +L GR KD +V++ G NV P            + +  VIG      G    A+
Sbjct: 387 DERGYVHIL-GRGKD-LVITGGFNVYPKEIESEIDAXPGVVESAVIGVPHADFGEGVTAV 444
Query: 574 IVPDKEEVLMAAKRLSIVHADASELSKEK 602
           +V DK   +  A+   ++H    +L+K K
Sbjct: 445 VVRDKGATIDEAQ---VLHGLDGQLAKFK 470

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 84/191 (43%), Gaps = 20/191 (10%)
Query: 397 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTES--SPVIAARRPTCNVLGSVGHPINHTEIK 454
           ++GG  +P  +   Y A  ++V  GY LTES     +          GS G     T++ 
Sbjct: 290 ITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVA 349
Query: 455 IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXX 514
           +     + V+    +G V ++   +++ Y+  P AT+ A D +GW  TGDIG I      
Sbjct: 350 V--RGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFD-NGWFRTGDIGEIDDEGY- 405
Query: 515 XXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG--- 571
                    L ++ R KD I+ S GENV P            + ++ VIG    + G   
Sbjct: 406 ---------LYIKDRLKDMII-SGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIA 455
Query: 572 -AIIVPDKEEV 581
            AI+V D+ EV
Sbjct: 456 AAIVVADQNEV 466

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 109/257 (42%), Gaps = 28/257 (10%)
Query: 55  KLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEEL 114
           +LE+    FA  LR +GV PEE++ L   ++    VA  G L  G + VV  +  +  + 
Sbjct: 53  ELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADY 112
Query: 115 LHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYD 174
           +++  HS + A+ + +      + + L S A      L+  +     P +    P+F  +
Sbjct: 113 VYMLTHSHARAV-IASGALVQNVTQALES-AEHDGCQLIVSQPRESEPRLA---PLF--E 165
Query: 175 EIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI 234
           E+ID    + KA                G DDIA ++Y+SG+TG PKG + TH N L+  
Sbjct: 166 ELIDAAAPAAKA-------------AATGCDDIAFWLYSSGSTGKPKGTVHTHAN-LYWT 211
Query: 235 RSLY--DIVPAENGDKFLSMLPPWHVYERACGY-FIFSRGIELMYTAVRNLKD----DLQ 287
             LY   I+     D   S    +  Y    G  F  S G   +  A R   D     L 
Sbjct: 212 AELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLV 271
Query: 288 RYQPHYMISVPLVYETL 304
            ++P     VP +Y  +
Sbjct: 272 EHRPTVFYGVPTLYANM 288

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 14/171 (8%)
Query: 398 SGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV 456
           S G +LP  I + F    G ++  G G TE   +  + R      G+ G P+   EI++ 
Sbjct: 307 SAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELR 366
Query: 457 DAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXX 516
           D E    +P G  G + ++G      Y+ N   ++     + W+ +GD     P+     
Sbjct: 367 D-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGE-WIRSGDKYCRLPN----- 419
Query: 517 XXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQ 567
                   V  GR+ D + +S G+ V P        +   + +  V+G D 
Sbjct: 420 -----GCYVYAGRSDDMLKVS-GQYVSPVEVEMVLVQHDAVLEAAVVGVDH 464

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 4/135 (2%)
Query: 375 HLLAEKL-VYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIA 432
           H +AE L    ++  A+  ++  VSG  +LP+H  +    A G +V   YG+TE+    +
Sbjct: 255 HRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTS 314
Query: 433 ARRPTCNVLGSVGHPINHTEIKIVDAETNEV--LPAGSKGIVKVRGSQVMQGYFKNPSAT 490
            R       G+VG P+   E+++V+ +   +  L   S G ++VRG  +   Y   P AT
Sbjct: 315 VRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDAT 374
Query: 491 KQALDEDGWLNTGDI 505
             A  EDG+  TGD+
Sbjct: 375 AAAFTEDGFFRTGDM 389

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 401 GSLPMHIDLFYE---AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVD 457
           GS P+  D   E     G  V   YG+TE++   +       V G+VG  +     ++ D
Sbjct: 276 GSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD 335
Query: 458 AETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 508
            ET   LP G  G+++V G  V  GY++ P  T     +DG+  TGD+G I
Sbjct: 336 PETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXI 386

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 401 GSLPMHIDLFYE---AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVD 457
           GS P+  D   E     G  V   YG+TE++   +       V G+VG  +     ++ D
Sbjct: 276 GSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD 335
Query: 458 AETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 508
            ET   LP G  G+++V G  V  GY++ P  T     +DG+  TGD+G I
Sbjct: 336 PETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXI 386

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 401 GSLPMHIDLFYE---AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVD 457
           GS P+  D   E     G  V   YG+TE++   +       V G+VG  +     ++ D
Sbjct: 276 GSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD 335
Query: 458 AETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 508
            ET   LP G  G+++V G  V  GY++ P  T     +DG+  TGD+G I
Sbjct: 336 PETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXI 386

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 58/123 (47%), Gaps = 13/123 (10%)
Query: 443 SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNT 502
           S G P+    + +VDAE +  LP G  G + +RG  V +GY+ N +AT+ A   +GW +T
Sbjct: 322 SAGRPLFWRTVAVVDAE-DRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHT 379
Query: 503 GDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVLST-GENVEPXXXXXXXXRSSLIRQIV 561
           GD+G                 L   GRA +  ++ T GENV P        +   I   V
Sbjct: 380 GDMGRF----------DADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAV 429
Query: 562 VIG 564
           VIG
Sbjct: 430 VIG 432

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 113/547 (20%), Positives = 192/547 (35%), Gaps = 111/547 (20%)
Query: 63  FAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSE 122
            A G+   GV+  E + +   NS  ++     +    A  V       S EL HI N SE
Sbjct: 65  LASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHILNDSE 124
Query: 123 SVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRE 182
           +  L V +  + N   + +  K  +  + ++ G+ +S++             E+ D G E
Sbjct: 125 ATTLVVHSXLYEN--FKPVLEKTGVERVFVVGGEVNSLS-------------EVXDSGSE 169
Query: 183 SRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP 242
                 D  + + +        +D+A   YT GTTG PKGV LTH NL      L     
Sbjct: 170 ------DFENVKVN------PEEDVALIPYTGGTTGXPKGVXLTHFNLAANALQLAVATG 217
Query: 243 AENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRN---LKDDLQRYQPHYMISVPL 299
             + D  +   P +H  E        + G E +     N   L +++++Y+  +  +VP 
Sbjct: 218 LSHXDTIVGCXPXFHSAEFGLVNLXVTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPP 277
Query: 300 VYETLYSGIQKQIFTSSXXXXXXXXXXXXXSFAYTAFKRIYEGFCLTRNQKQPSYLVALI 359
               L + ++    T                                             
Sbjct: 278 ALNVLVNTLESSNKT--------------------------------------------Y 293
Query: 360 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQ 419
           DW + ++     WP   +A  LV K ++ A                +  L +  I    +
Sbjct: 294 DWSYLKVFATGAWP---VAPALVEKLLKLAAEKCN-----------NPRLRHNQIWGXTE 339
Query: 420 VGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQV 479
               +T + P+   +  T  V      P +  E+K++  E    L  G  G + +RG  +
Sbjct: 340 ACPXVTTNPPLRLDKSTTQGV------PXSDIELKVISLEDGRELGVGESGEIVIRGPNI 393
Query: 480 MQGYFKNPSATKQA--LDEDG--WLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIV 535
            +GY+K     ++    DE G  +  TGD+G+I               L  + R K+ I 
Sbjct: 394 FKGYWKREKENQECWWYDEKGRKFFRTGDVGFI----------DEEGFLHFQDRVKEVIK 443
Query: 536 LSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADA 595
              G  + P        +   +  + VIG+     G   VP    VL    R  +   D 
Sbjct: 444 YK-GYTIAPFELEALLXKHEAVXDVAVIGKPDEEAGE--VPKAFIVLKPEYRGKVDEEDI 500
Query: 596 SELSKEK 602
            E  +E+
Sbjct: 501 IEWVRER 507

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 76/171 (44%), Gaps = 22/171 (12%)
Query: 421 GYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIVKVRGS- 477
           GYG TE+   +  R+P     G+   P   +E++IV      +E++  G +G + V  S 
Sbjct: 303 GYGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASD 359
Query: 478 QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVLS 537
               GY   P AT + L +DGW  T D+    P            V +L GR  D I+ S
Sbjct: 360 SAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVDDMII-S 407
Query: 538 TGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 584
            GEN+ P         +  + ++VVIG   +R G    A +VP   E L A
Sbjct: 408 GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 415 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 472
           G KV + YG TE+   +  R+P     G+   P   +E++IV      +E++  G +G +
Sbjct: 298 GEKVNI-YGTTEAXNSLYXRQPKT---GTEXAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 473 KVRGSQ-VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 531
            V  S     GY   P AT + L +DGW  T D+    P            V +L GR  
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVD 402
Query: 532 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 584
           D I+ S GEN+ P         +  + ++VVIG   +R G    A +VP   E L A
Sbjct: 403 DXII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 13/145 (8%)
Query: 370 ILWPLHLLAEKLVYK-KIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESS 428
           I+W    L +   YK +IQS   +   G S   SL   +    E +  K+Q  +G+ E  
Sbjct: 293 IMW----LEKAAQYKDQIQSLKLLQVGGASFPESLARQVP---EVLNCKLQQVFGMAEGL 345
Query: 429 PVIAARRPTCN--VLGSVGHPIN-HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFK 485
            V   R    +  +  + G PI+   EIKIVD +  EV P G  G++  RG     GY++
Sbjct: 346 -VNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREV-PEGEIGMLATRGPYTFCGYYQ 403
Query: 486 NPSATKQALDEDGWLNTGDIGWIAP 510
           +P    Q  DED +  +GD+    P
Sbjct: 404 SPEHNSQVFDEDNYYYSGDLVQRTP 428

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 415 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 472
           G KV + YG TE+   +  R+P     G+   P   +E++IV      +E++  G +G +
Sbjct: 298 GEKVNI-YGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 473 KVRGS-QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 531
            V  S     GY   P AT + L +DGW  T D+    P            V +L GR  
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVD 402
Query: 532 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 584
           D I+ S GEN+ P         +  + ++VVIG   +R G    A +VP   E L A
Sbjct: 403 DMII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 415 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 472
           G KV + YG TE+   +  R+P     G+   P   +E++IV      +E++  G +G +
Sbjct: 298 GEKVNI-YGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 473 KVRGSQ-VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 531
            V  S     GY   P AT + L +DGW  T D+    P            V +L GR  
Sbjct: 354 IVAASDSAFVGYLNQPEATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVD 402
Query: 532 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 584
           D I+ S GEN+ P         +  + ++VVIG   +R G    A +VP   E L A
Sbjct: 403 DMII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 415 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 472
           G KV + YG TE+   +  R+P     G+   P   +E++IV      +E++  G +G +
Sbjct: 298 GEKVNI-YGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 473 KVRGS-QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 531
            V  S     GY   P AT + L +DGW  T D+    P            V +L GR  
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVP 402
Query: 532 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 584
           D I+ S GEN+ P         +  + ++VVIG   +R G    A +VP   E L A
Sbjct: 403 DMII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 22/170 (12%)
Query: 422 YGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIVKVRGS-Q 478
           YG TE+   +  R+P     G+   P   +E++IV      +E++  G +G + V  S  
Sbjct: 304 YGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDS 360
Query: 479 VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVLST 538
              GY   P AT + L +DGW  T D+    P            V +L GR  D I+ S 
Sbjct: 361 AFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVDDMII-SG 408
Query: 539 GENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 584
           GEN+ P         +  + ++VVIG   +R G    A +VP   E L A
Sbjct: 409 GENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 397 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTES--SPVIAARRPTCNVLGSVGHPINHTEIK 454
           ++GG  +P  +   Y A  ++V  GY LTES     +          GS G     T++ 
Sbjct: 276 ITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVA 335
Query: 455 IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 508
           +     + V+    +G V ++   +++ Y+  P AT+ A D +GW  TGDIG I
Sbjct: 336 V--RGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFD-NGWFRTGDIGEI 386

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 17/125 (13%)
Query: 414 IGVKVQVGYGLTESSPVIAARR---PTCNVLGSVGHPI-NHTEIKIVDAETNEVLPAGSK 469
           IG ++Q  +G+ E   ++   R       ++ + G+P+    E+ + DAE N  LP G  
Sbjct: 326 IGCQLQQVFGMAEG--LVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNP-LPQGEV 382
Query: 470 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGR 529
           G +  RG    +GY+K+P     A D +G+  +GD+  I P             + ++GR
Sbjct: 383 GRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPE----------GYITVQGR 432
Query: 530 AKDTI 534
            KD I
Sbjct: 433 EKDQI 437

>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 201 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 257
           +I S+DIA   YTSG+T +PKGV ++H NLL  +  ++      +     S LPP H
Sbjct: 163 SIKSNDIAFLQYTSGSTXHPKGVXVSHHNLLDNLNKIFTSFHXNDETIIFSWLPPHH 219

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 76/184 (41%), Gaps = 16/184 (8%)
Query: 395 AGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIK 454
           A V+G    P   + F E  G+K+  G+G TE+   IA         GS+G P    +I+
Sbjct: 346 AVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIE 405
Query: 455 IVDAETN--EVLPAGSKGIVKVRGSQV--MQGYFKNPSATKQALDEDGWLNTGDIGWIAP 510
           ++D +    EV   G   I  + G  V     Y K+P  T++    DG+ +TGD+ W+  
Sbjct: 406 LMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWM-- 462
Query: 511 HHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRP 570
                        L   GRA D I+ ++G  V P        +   + +  + G      
Sbjct: 463 --------DEDGYLWFVGRADD-IIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVR 513
Query: 571 GAII 574
           G +I
Sbjct: 514 GQVI 517

>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 203 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFL 250
           G++D+A  +YTSGTTGNPKGV + H N+L  +     +      D++L
Sbjct: 173 GAEDMAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSGDDRWL 220

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 205 DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL-YDIVPAENGDKFLSMLPPWH 257
           +DIA   YTSG+T  P+GV++TH+ +   +R++ +D +    GD+ +S LP +H
Sbjct: 175 NDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDGIKLRPGDRCVSWLPFYH 228

>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 90/221 (40%), Gaps = 29/221 (13%)
Query: 403 LPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNE 462
           LP  ++ +    G+ ++  YG TE+       +      G +G   +  +++I+D + N 
Sbjct: 335 LPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDDKGN- 393
Query: 463 VLPAGSKGIVKVRGSQV-----MQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXX 517
           VLP G++G + +R   +       GY  NP  T   +  D WL  GD G           
Sbjct: 394 VLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRG----------I 442
Query: 518 XXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPGAIIVPD 577
                     GRA D I+ S+G  + P            + +  VI       G ++   
Sbjct: 443 KDEDGYFQFMGRADD-IINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVV--- 498
Query: 578 KEEVLMAAKRLSIVHADASELSKE-----KTISLLYGELRK 613
           K  V++A++ LS    D  +L+KE     K+++  Y   RK
Sbjct: 499 KAFVVLASQFLS---HDPEQLTKELQQHVKSVTAPYKYPRK 536

>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 90/221 (40%), Gaps = 29/221 (13%)
Query: 403 LPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNE 462
           LP  ++ +    G+ ++  YG TE+       +      G +G   +  +++I+D + N 
Sbjct: 335 LPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDDKGN- 393
Query: 463 VLPAGSKGIVKVRGSQV-----MQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXX 517
           VLP G++G + +R   +       GY  NP  T   +  D WL  GD G           
Sbjct: 394 VLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRG----------I 442
Query: 518 XXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPGAIIVPD 577
                     GRA D I+ S+G  + P            + +  VI       G ++   
Sbjct: 443 KDEDGYFQFMGRADD-IINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVV--- 498
Query: 578 KEEVLMAAKRLSIVHADASELSKE-----KTISLLYGELRK 613
           K  V++A++ LS    D  +L+KE     K+++  Y   RK
Sbjct: 499 KAFVVLASQFLS---HDPEQLTKELQQHVKSVTAPYKYPRK 536

>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/27 (66%), Positives = 21/27 (77%)
Query: 204 SDDIATYVYTSGTTGNPKGVMLTHKNL 230
           S D+A  +YTSGTTGNPKG ML HK +
Sbjct: 181 STDLAYVIYTSGTTGNPKGTMLEHKGI 207

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 12/100 (12%)
Query: 436 PTCNVLGSVGHPIN-HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL 494
           P   ++ + G P++ + E ++ D    +V P G  G +  RG   ++GY+K       + 
Sbjct: 345 PEEIIVNTQGKPMSPYDESRVWDDHDRDVKP-GETGHLLTRGPYTIRGYYKAEEHNAASF 403
Query: 495 DEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTI 534
            EDG+  TGDI                  +V+EGRAKD I
Sbjct: 404 TEDGFYRTGDI----------VRLTRDGYIVVEGRAKDQI 433

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	641
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	6e-43
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	4e-23
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	6e-39
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	4e-18
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	4e-38
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	2e-23
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	6e-38
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	6e-23
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	1e-37
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	7e-22
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	1e-36
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	2e-18
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	6e-36
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	5e-18
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	2e-35
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	1e-18
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	3e-35
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	6e-18
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	1e-34
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	2e-25
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	2e-34
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	3e-24
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	5e-34
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	8e-24
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	6e-34
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	1e-22
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	4e-33
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	2e-24
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	6e-32
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	9e-23
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	6e-31
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	2e-11
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	3e-22
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	3e-12
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	5e-20
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	8e-14
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	2e-15
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	5e-10
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	4e-15
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	5e-13
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	4e-12
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	6e-07
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	1e-11
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	9e-10
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	8e-09
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	2e-08
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	2e-08
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	6e-08
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	7e-07

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  160 bits (408), Expect = 6e-43
 Identities = 57/246 (23%), Positives = 98/246 (39%), Gaps = 45/246 (18%)

Query: 394 KAGVSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTE 452
           +  +SG   L       +    G  V   YG+TE++   +       V G+VG  +    
Sbjct: 271 RLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVS 330

Query: 453 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 512
            ++ D ET + LP G  G+++V+G  V +GY++ P  TK    +DG+  TGD+G I    
Sbjct: 331 ARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDER- 389

Query: 513 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGA 572
                    G + + GR KD ++ + G NV P E+E        + +  VIG        
Sbjct: 390 ---------GYVHILGRGKDLVI-TGGFNVYPKEIESEIDAMPGVVESAVIG-------- 431

Query: 573 IIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGP------ 624
             VP  +  E + A     +V    + + +         ++         Q+        
Sbjct: 432 --VPHADFGEGVTAV----VVRDKGATIDEA--------QVLHG---LDGQLAKFKMPKK 474

Query: 625 IHVVDE 630
           +  VD+
Sbjct: 475 VIFVDD 480

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  102 bits (256), Expect = 4e-23
 Identities = 44/205 (21%), Positives = 79/205 (38%), Gaps = 30/205 (14%)

Query: 56  LEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELL 115
           L       A  L   G++  ++++  ++ S   LV     +  G + +   +  +  EL 
Sbjct: 34  LVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHELD 93

Query: 116 HIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDE 175
           +    +E   +  + P   + IA                         I  ++       
Sbjct: 94  YFITDAEPKIVVCD-PSKRDGIAA------------------------IAAKVGA----T 124

Query: 176 IIDLGRESRKAFSD-SNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI 234
           +  LG + R + +D +  A + +     G+DD+A  +YTSGTTG  KG ML+H NL    
Sbjct: 125 VETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNS 184

Query: 235 RSLYDIVPAENGDKFLSMLPPWHVY 259
            +L D       D  +  LP +H +
Sbjct: 185 LTLVDYWRFTPDDVLIHALPIYHTH 209

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  149 bits (378), Expect = 6e-39
 Identities = 59/192 (30%), Positives = 86/192 (44%), Gaps = 19/192 (9%)

Query: 396 GVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIK 454
            VSG  +LP+H  +    A G +V   YG+TE+    + R       G+VG P+   E++
Sbjct: 277 LVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELR 336

Query: 455 IVDAETNEV--LPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 512
           +V+ +   +  L   S G ++VRG  +   Y   P AT  A  EDG+  TGD+    P  
Sbjct: 337 LVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPD- 395

Query: 513 SRGRSRRCGGVLVLEGR-AKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ-DQR-- 568
                    G + + GR A D I  S G  +   E+E A L    +R+  V G+ D    
Sbjct: 396 ---------GYVRIVGRKATDLIK-SGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLG 445

Query: 569 -RPGAIIVPDKE 579
            R  A IVP   
Sbjct: 446 ERIVAWIVPADP 457

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score = 86.9 bits (216), Expect = 4e-18
 Identities = 42/204 (20%), Positives = 68/204 (33%), Gaps = 48/204 (23%)

Query: 56  LEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELL 115
           L       A  +         ++++++  +    VA    L  G   V    +S  +EL 
Sbjct: 54  LAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELA 108

Query: 116 HIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDE 175
           HI + S    +                                 +AP   E  P     E
Sbjct: 109 HILSDSAPSLV---------------------------------LAPPDAELPPALGALE 135

Query: 176 IIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR 235
            +D+   +R A  +          +     D A  VYTSGTTG PKG ++  + L   + 
Sbjct: 136 RVDVDVRARGAVPE----------DGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLD 185

Query: 236 SLYDIVPAENGDKFLSMLPPWHVY 259
           +L D       D  +  LP +HV+
Sbjct: 186 ALADAWQWTGEDVLVQGLPLFHVH 209

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  147 bits (374), Expect = 4e-38
 Identities = 60/228 (26%), Positives = 92/228 (40%), Gaps = 37/228 (16%)

Query: 394 KAGVSGGGSLPMH-IDLFYEAIG-VKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHT 451
               SGG  L     +          V+ GYGLTE++  I       +  G+ G  +   
Sbjct: 312 VEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLF 371

Query: 452 EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 511
           + K++D +T + L    +G V V+G  +M+GY  NP ATK+ +DE+GWL+TGDIG+    
Sbjct: 372 KAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEE 431

Query: 512 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG 571
                         +  R K  I    G  V P ELE   L+   I    V G       
Sbjct: 432 ----------KHFFIVDRLKSLIKYK-GYQVPPAELESVLLQHPSIFDAGVAG------- 473

Query: 572 AIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSK 617
              VPD    E+  A     +V      ++++        E+  + + 
Sbjct: 474 ---VPDPVAGELPGAV----VVLESGKNMTEK--------EVMDYVAS 506

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  103 bits (260), Expect = 2e-23
 Identities = 45/255 (17%), Positives = 92/255 (36%), Gaps = 23/255 (9%)

Query: 54  SKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEE 113
           ++  ++     + L+  G+  + +++L S+N   + +     L  G          +  E
Sbjct: 56  AEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRE 115

Query: 114 LLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSY 173
           L+H    S+   +   + +  +++     +   ++ I++L           V+       
Sbjct: 116 LVHSLGISKPTIV-FSSKKGLDKVITVQKTVTTIKTIVIL--------DSKVDYRGYQCL 166

Query: 174 DEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNL--- 230
           D  I          S           E    + +A  + +SG+TG PKGV LTH+N+   
Sbjct: 167 DTFIKRNTPPGFQASSFKTV------EVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTR 220

Query: 231 LHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELM----YTAVRNLKDDL 286
               R          G   L+++P  H +           G  ++    +     LK  L
Sbjct: 221 FSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLK-TL 279

Query: 287 QRYQPHYMISVPLVY 301
           Q Y+   +I VP ++
Sbjct: 280 QDYKCTSVILVPTLF 294

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  147 bits (373), Expect = 6e-38
 Identities = 58/228 (25%), Positives = 91/228 (39%), Gaps = 37/228 (16%)

Query: 394 KAGVSGGGSLPMH-IDLFYEAIG-VKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHT 451
               SGG  L     +   +      ++ GYGLTE++  I       +  G+VG  +   
Sbjct: 310 HEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFF 369

Query: 452 EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 511
           E K+VD +T + L    +G + VRG  +M GY  NP AT   +D+DGWL++GDI +    
Sbjct: 370 EAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDED 429

Query: 512 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG 571
                         +  R K  I    G  V P ELE   L+   I    V G       
Sbjct: 430 ----------EHFFIVDRLKSLIKYK-GYQVAPAELESILLQHPNIFDAGVAG------- 471

Query: 572 AIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSK 617
              +PD +  E+  A     +V      ++++        E+  + + 
Sbjct: 472 ---LPDDDAGELPAAV----VVLEHGKTMTEK--------EIVDYVAS 504

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  101 bits (255), Expect = 6e-23
 Identities = 43/255 (16%), Positives = 85/255 (33%), Gaps = 23/255 (9%)

Query: 54  SKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEE 113
           ++  +  +  AE ++  G+    ++ + S+NS ++ +   G L  G          +  E
Sbjct: 54  AEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERE 113

Query: 114 LLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSY 173
           LL+  N S+   +   + +   +I         ++ II++            +     S 
Sbjct: 114 LLNSMNISQPTVV-FVSKKGLQKILNVQKKLPIIQKIIIM--------DSKTDYQGFQSM 164

Query: 174 DEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNL--- 230
              +           D                 IA  + +SG+TG PKGV L H+     
Sbjct: 165 YTFVTSHLPPGFNEYDFVPE------SFDRDKTIALIMNSSGSTGLPKGVALPHRTACVR 218

Query: 231 LHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELM----YTAVRNLKDDL 286
               R              LS++P  H +           G  ++    +     L+  L
Sbjct: 219 FSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLR-SL 277

Query: 287 QRYQPHYMISVPLVY 301
           Q Y+    + VP ++
Sbjct: 278 QDYKIQSALLVPTLF 292

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  146 bits (371), Expect = 1e-37
 Identities = 68/230 (29%), Positives = 109/230 (47%), Gaps = 42/230 (18%)

Query: 397 VSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIA-----ARRPTCNVLGSVGHPIN 449
            SGG  L   + D         ++  GYG+TE+ PV+A     A+ P     G+ G  + 
Sbjct: 303 KSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVR 362

Query: 450 HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 509
           + E+KIVD ET   LP    G + +RG Q+M+GY  +P AT + +D++GWL+TGDIG+I 
Sbjct: 363 NAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYID 422

Query: 510 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR 569
                         L +  R K+ I    G  V P ELE   +    I    V+G     
Sbjct: 423 DD----------DELFIVDRLKELIKYK-GFQVAPAELEALLIAHPEISDAAVVG----- 466

Query: 570 PGAIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSK 617
                + D++  EV +A     +V ++ S+ +++        E++++ SK
Sbjct: 467 -----LKDEDAGEVPVAF----VVKSEKSQATED--------EIKQYISK 499

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score = 98.8 bits (247), Expect = 7e-22
 Identities = 54/258 (20%), Positives = 97/258 (37%), Gaps = 38/258 (14%)

Query: 54  SKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEE 113
           + +E      A GL  IG++  + + LF  +S  +++A  G    GAI       S+  E
Sbjct: 53  ADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAE 112

Query: 114 LLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSY 173
           L      S +  L +    ++ ++ +    ++ ++ +                       
Sbjct: 113 LAKHAKASRAKLL-ITQACYYEKVKD-FARESDVKVMC---------------------- 148

Query: 174 DEIIDLGRESRKAFSD-SNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNL-- 230
              +D   +    FS+ +           I  DD+    Y+SGTTG PKGVMLTHK L  
Sbjct: 149 ---VDSAPDGCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLIT 205

Query: 231 --LHQIRSLYDIVPAENGDKFLSMLPPWHVY-ERACGYFIFSRGIELM----YTAVRNLK 283
               Q+      +   + D  L +LP +H+Y   +        G  ++    +     L 
Sbjct: 206 SVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLG 265

Query: 284 DDLQRYQPHYMISVPLVY 301
             +++Y+      VP V 
Sbjct: 266 -LIEKYKVSIAPVVPPVM 282

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  142 bits (361), Expect = 1e-36
 Identities = 52/227 (22%), Positives = 91/227 (40%), Gaps = 43/227 (18%)

Query: 394 KAGVSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTE 452
           +     G ++P   ++  ++ +  +    YG TE+   +  R+P     G+   P   +E
Sbjct: 275 RHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPK---TGTEMAPGFFSE 331

Query: 453 IKIVDAET--NEVLPAGSKGIVKVRGS-QVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 509
           ++IV      +E++  G +G + V  S     GY   P AT + L  DGW  T D+    
Sbjct: 332 VRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQ-DGWYRTSDVAVWT 390

Query: 510 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR 569
           P           G + + GR  D I+ S GEN+ P E+E     +  + ++VVIG     
Sbjct: 391 PE----------GTVRILGRVDDMII-SGGENIHPSEIERVLGTAPGVTEVVVIG----- 434

Query: 570 PGAIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKW 614
                + D+   + + A     +V      LS +         L  +
Sbjct: 435 -----LADQRWGQSVTAC----VVPRLGETLSAD--------ALDTF 464

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score = 87.6 bits (218), Expect = 2e-18
 Identities = 37/211 (17%), Positives = 67/211 (31%), Gaps = 33/211 (15%)

Query: 56  LEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELL 115
           L   +   A  L   G++P++++++ + NS   ++A   +   GA+  +   R  S EL 
Sbjct: 35  LRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELA 94

Query: 116 HIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDE 175
            +    E  A  +              S +  R I L    +          I       
Sbjct: 95  ELIKRGEMTAAVIA--VGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYGPPIED----- 147

Query: 176 IIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR 235
                                           A   YTSGTTG PK  ++  +    ++ 
Sbjct: 148 ------------------------PQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVL 183

Query: 236 SLYDIVPAENG--DKFLSMLPPWHVYERACG 264
            +   V   +G  +  L ++P +HV      
Sbjct: 184 FMSTQVGLRHGRHNVVLGLMPLYHVVGFFAV 214

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  141 bits (358), Expect = 6e-36
 Identities = 53/199 (26%), Positives = 81/199 (40%), Gaps = 19/199 (9%)

Query: 394 KAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVI-AARRPTCNVLGSVGHPIN-H 450
           K    GG S P  +     E +  K+Q  +G+ E              +  + G PI+  
Sbjct: 310 KLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSD 369

Query: 451 TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 510
            EIKIVD +  EV P G  G++  RG     GY+++P    Q  DED +  +GD+    P
Sbjct: 370 DEIKIVDEQYREV-PEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTP 428

Query: 511 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQR- 568
                      G L + GR KD I    GE +   E+E+  L    +    ++   D++ 
Sbjct: 429 D----------GNLRVVGRIKDQIN-RGGEKIASEEIEKLILLHPEVMHAALVAIVDEQF 477

Query: 569 --RPGAIIVPDKEEVLMAA 585
             +  A IV    E+    
Sbjct: 478 GEKSCAFIVSRNPELKAVV 496

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score = 86.4 bits (215), Expect = 5e-18
 Identities = 32/209 (15%), Positives = 67/209 (32%), Gaps = 29/209 (13%)

Query: 56  LEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAI--NVVRGSRSSSEE 113
           L++   + A  L   G+   +   +   N   + +    +L  G +  N +   R    E
Sbjct: 61  LDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQY--E 118

Query: 114 LLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSY 173
           L       +   L                S                    + +     S 
Sbjct: 119 LNAFIKQIQPKLLIG--SRQHEVF-----SNNQF-------------IDSLHDVNL--SP 156

Query: 174 DEIIDLGRESRKAFSDS---NDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNL 230
           + I+ L  ++            A     + +  +D++A +  + G+TG PK +  TH + 
Sbjct: 157 EIILMLNHQATDFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDY 216

Query: 231 LHQIRSLYDIVPAENGDKFLSMLPPWHVY 259
            + +R+  +I    +  + L  LP  H +
Sbjct: 217 DYSVRASAEICGLNSNTRLLCALPAPHNF 245

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  140 bits (355), Expect = 2e-35
 Identities = 47/193 (24%), Positives = 80/193 (41%), Gaps = 29/193 (15%)

Query: 396 GVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPTCN------VLGSVGHPI 448
              GG  L   +       IG ++Q  +G+ E          T        ++ + G+P+
Sbjct: 307 LQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNY-----TRLDDSAEKIIHTQGYPM 361

Query: 449 N-HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW 507
               E+ + DAE N + P G  G +  RG    +GY+K+P     A D +G+  +GD+  
Sbjct: 362 CPDDEVWVADAEGNPL-PQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLIS 420

Query: 508 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QD 566
           I P           G + ++GR KD I    GE +   E+E   LR   +    ++  +D
Sbjct: 421 IDPE----------GYITVQGREKDQIN-RGGEKIAAEEIENLLLRHPAVIYAALVSMED 469

Query: 567 QR---RPGAIIVP 576
           +    +  A +V 
Sbjct: 470 ELMGEKSCAYLVV 482

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score = 88.8 bits (221), Expect = 1e-18
 Identities = 39/205 (19%), Positives = 64/205 (31%), Gaps = 23/205 (11%)

Query: 56  LEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELL 115
           L Q   + A  LR  G+KP E   +   N     +    +L  G   V+        EL 
Sbjct: 56  LNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQRSELN 115

Query: 116 HIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDE 175
              +  E   L           +                          V E    S   
Sbjct: 116 AYASQIEPALLIA--DRQHALFSG-----DDF-------------LNTFVTEHS--SIRV 153

Query: 176 IIDLGRESRKAFSDS-NDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI 234
           +  L         D+ N   + +      +D++A +  + GTTG PK +  TH +  + +
Sbjct: 154 VQLLNDSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSV 213

Query: 235 RSLYDIVPAENGDKFLSMLPPWHVY 259
           R   +I       ++L  +P  H Y
Sbjct: 214 RRSVEICQFTQQTRYLCAIPAAHNY 238

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  139 bits (352), Expect = 3e-35
 Identities = 49/199 (24%), Positives = 78/199 (39%), Gaps = 20/199 (10%)

Query: 394 KAGVSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVI-AARRPTCNVLGSVGHPIN-H 450
           +    GG               G  +Q  +G+ E          P   ++ + G P++ +
Sbjct: 301 QVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPY 360

Query: 451 TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 510
            E ++ D    +V   G  G +  RG   ++GY+K       +  EDG+  TGDI  +  
Sbjct: 361 DESRVWDDHDRDV-KPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTR 419

Query: 511 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQR- 568
                      G +V+EGRAKD I    GE V   E+E   L    +    ++   DQ  
Sbjct: 420 D----------GYIVVEGRAKDQIN-RGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFL 468

Query: 569 --RPGAIIVPDKEEVLMAA 585
             R    I+P ++E   AA
Sbjct: 469 GERSCVFIIP-RDEAPKAA 486

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score = 86.4 bits (215), Expect = 6e-18
 Identities = 35/205 (17%), Positives = 79/205 (38%), Gaps = 25/205 (12%)

Query: 56  LEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELL 115
           L+      A G + +G++ ++++ +   N   +      +   GA+ V       S E+ 
Sbjct: 56  LDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEIT 115

Query: 116 HIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDE 175
           +    +E+ A  +  P+ ++          ++             A  +  ++P  +   
Sbjct: 116 YFCEFAEAAAYII--PDAYSGFDY-----RSL-------------ARQVQSKLP--TLKN 153

Query: 176 IIDLG-RESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI 234
           II  G  E      D +      K   + S D+A    + G+TG  K +  TH + ++ +
Sbjct: 154 IIVAGEAEEFLPLEDLHTEPV--KLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSL 211

Query: 235 RSLYDIVPAENGDKFLSMLPPWHVY 259
           +   ++   ++   +L+ LP  H Y
Sbjct: 212 KRSVEVCWLDHSTVYLAALPMAHNY 236

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  137 bits (348), Expect = 1e-34
 Identities = 49/231 (21%), Positives = 92/231 (39%), Gaps = 43/231 (18%)

Query: 394 KAGVSGGGSLPMHI-DLFYEAIGVKVQV-------GYGLTESSPVIAARRPT-CNVLGSV 444
           K   +G   +   + +   +    K           +G+TE+ P++    P   +   + 
Sbjct: 299 KVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQ 358

Query: 445 GHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL----DEDGWL 500
           G P++  E+K++  E    L  G  G + +RG  + +GY+K     ++          + 
Sbjct: 359 GVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFF 418

Query: 501 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQI 560
            TGD+G+I             G L  + R K+ I    G  + P ELE   ++   +  +
Sbjct: 419 RTGDVGFIDEE----------GFLHFQDRVKEVIKYK-GYTIAPFELEALLMKHEAVMDV 467

Query: 561 VVIGQ-DQRR---PGAIIVP--------DKEEVL------MAA-KRLSIVH 592
            VIG+ D+     P A IV         D+E+++      ++  KR+  V 
Sbjct: 468 AVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVE 518

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  109 bits (276), Expect = 2e-25
 Identities = 56/258 (21%), Positives = 97/258 (37%), Gaps = 34/258 (13%)

Query: 56  LEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELL 115
           + +     A G+   GV+  E + +   NS  +++    +    A  V       S EL 
Sbjct: 58  ICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELE 117

Query: 116 HIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDE 175
           HI N SE+  L V +   +      L              +K+ V    V    V S  E
Sbjct: 118 HILNDSEATTL-VVHSMLYENFKPVL--------------EKTGVERVFVVGGEVNSLSE 162

Query: 176 IIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR 235
           ++D            + +      +    +D+A   YT GTTG PKGVMLTH NL     
Sbjct: 163 VMD------------SGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANAL 210

Query: 236 SLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLK---DDLQRYQPH 292
            L       + D  +  +P +H  E      + + G E +   + N +   +++++Y+  
Sbjct: 211 QLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGT 270

Query: 293 YMISVPLVYETLYSGIQK 310
           +  +VP       + +  
Sbjct: 271 FSWAVP----PALNVLVN 284

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  136 bits (346), Expect = 2e-34
 Identities = 56/194 (28%), Positives = 88/194 (45%), Gaps = 20/194 (10%)

Query: 394 KAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP--TCNVLGSVGHPINHT 451
           +  ++GG  +P  +   Y A  ++V  GY LTES                GS G     T
Sbjct: 287 RYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFT 346

Query: 452 EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 511
           ++ +   +       G   +V ++   +++ Y+  P AT+ A D +GW  TGDIG I   
Sbjct: 347 DVAVRGDDGVIR-EHGEGEVV-IKSDILLKEYWNRPEATRDAFD-NGWFRTGDIGEIDDE 403

Query: 512 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ-DQRR- 569
                     G L ++ R KD I+ S GENV P E+E   +    + ++ VIG  D++  
Sbjct: 404 ----------GYLYIKDRLKDMII-SGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWG 452

Query: 570 --PGAIIVPDKEEV 581
               AI+V D+ EV
Sbjct: 453 EIAAAIVVADQNEV 466

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  106 bits (266), Expect = 3e-24
 Identities = 50/253 (19%), Positives = 85/253 (33%), Gaps = 33/253 (13%)

Query: 56  LEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELL 115
           +       A+ L  +G+   ++++L   NS  +     G    GA+ V   +R ++ E+ 
Sbjct: 49  MNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVS 108

Query: 116 HIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDE 175
            I + S S  +          I                      +         V  +  
Sbjct: 109 FILSDSGSKVVIYG-APSAPVIDA--------------------IRAQADPPGTVTDWIG 147

Query: 176 IIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR 235
              L    R A +D             G DD    +YTSGTTG+PKGV+ TH+++     
Sbjct: 148 ADSLAERLRSAAADEPAVE-------CGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAAS 200

Query: 236 SLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRG----IELMYTAVRNLKDDLQRYQP 291
           S    +     D+ L  LP +HV       F   RG        + A +     +   + 
Sbjct: 201 SWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVW-SLIVEERV 259

Query: 292 HYMISVPLVYETL 304
               +VP +   +
Sbjct: 260 CIGGAVPAILNFM 272

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  135 bits (341), Expect = 5e-34
 Identities = 46/196 (23%), Positives = 76/196 (38%), Gaps = 29/196 (14%)

Query: 397 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP--TCNVLGSVGHPINHTEIK 454
           + GG  L   +        + +   +G+TE+        P        +VG P  + ++K
Sbjct: 280 LLGGAKLSATMIETALQYNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVK 339

Query: 455 IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR 514
           I +            G + ++G+ VM GY      T     E+G+ NTGDI  I      
Sbjct: 340 IKNPNKEGH------GELMIKGANVMNGYLYPTDLTG-TF-ENGYFNTGDIAEIDHE--- 388

Query: 515 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ-DQRR---P 570
                  G +++  R KD I+ S GEN+ P ++E  A +   I   V +G  D      P
Sbjct: 389 -------GYVMIYDRRKDLII-SGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVP 440

Query: 571 GAIIVP----DKEEVL 582
               V      K +++
Sbjct: 441 KLYFVSESDISKAQLI 456

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  104 bits (262), Expect = 8e-24
 Identities = 37/253 (14%), Positives = 84/253 (33%), Gaps = 23/253 (9%)

Query: 56  LEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELL 115
           L  E    A+ L       + ++ L+ DNS + ++             +  +R +  E+ 
Sbjct: 32  LYCEASLLAKRL---KAYQQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMT 88

Query: 116 HIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDE 175
           +     +   +         R  + +                  +     +       D 
Sbjct: 89  NQMRSIDVQLIFCT-LPLELRGFQIV--------------SLDDIEFAGRDITTNGLLDN 133

Query: 176 IIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR 235
            + +  ++        ++  +    +   DDIA+ ++TSGTTG  K V  T +N      
Sbjct: 134 TMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAI 193

Query: 236 SLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELM----YTAVRNLKDDLQRYQP 291
              + +  +    +LS+LP +H+   +        G  +     + A + L   ++  + 
Sbjct: 194 GCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQIL-TMIKNERI 252

Query: 292 HYMISVPLVYETL 304
            ++  VP     L
Sbjct: 253 THISLVPQTLNWL 265

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  137 bits (348), Expect = 6e-34
 Identities = 66/214 (30%), Positives = 99/214 (46%), Gaps = 34/214 (15%)

Query: 397 VSGGGSLPMH-IDLFYEAI-GVKVQVGYGLTESSPVIA-----ARRPTCNVLGSVGHPIN 449
            SG   L     D         K+  GYG+TE+ PV+A     A+ P     G+ G  + 
Sbjct: 350 KSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVR 409

Query: 450 HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 509
           + E+KIVD +T + L     G + +RG Q+M+GY  NP+AT + +D+DGWL+TGDIG I 
Sbjct: 410 NAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLID 469

Query: 510 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR 569
                         L +  R K+ I    G  V P ELE   +    I  + V+      
Sbjct: 470 DD----------DELFIVDRLKELIKYK-GFQVAPAELEALLIGHPDITDVAVVA----- 513

Query: 570 PGAIIVPDKE--EVLMAAKRLSIVHADASELSKE 601
                + ++   EV +A     +V +  SELS++
Sbjct: 514 -----MKEEAAGEVPVAF----VVKSKDSELSED 538

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  102 bits (255), Expect = 1e-22
 Identities = 47/257 (18%), Positives = 90/257 (35%), Gaps = 28/257 (10%)

Query: 54  SKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEE 113
           S +       A     +GV   + + L   N   ++++       GA         +  E
Sbjct: 92  SDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAE 151

Query: 114 LLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSY 173
           +      S +  + +    + ++I   L +   +  + +   +   +    +       +
Sbjct: 152 IAKQAKASNTKLI-ITEARYVDKIKP-LQNDDGVVIVCIDDNESVPIPEGCL------RF 203

Query: 174 DEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNL--- 230
            E+             + +A +      I  DD+    Y+SGTTG PKGVMLTHK L   
Sbjct: 204 TELTQ----------STTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTS 253

Query: 231 -LHQIRSLYDIVPAENGDKFLSMLPPWHVY-ERACGYFIFSRGIEL--M--YTAVRNLKD 284
              Q+      +   + D  L +LP +H+Y   +        G  +  M  +     L+ 
Sbjct: 254 VAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLE- 312

Query: 285 DLQRYQPHYMISVPLVY 301
            +QR +      VP + 
Sbjct: 313 LIQRCKVTVAPMVPPIV 329

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  132 bits (335), Expect = 4e-33
 Identities = 59/203 (29%), Positives = 85/203 (41%), Gaps = 31/203 (15%)

Query: 394 KAGVSGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVI----AARRPTCNVLGSVGHPI 448
           +A        P  I+ F            +G +E+S +        RP      S G P+
Sbjct: 275 RAVTGLDT--PETIERFEATCPNATFWATFGQSETSGLSTFAPYRDRP-----KSAGRPL 327

Query: 449 NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 508
               + +VDAE   + P G  G + +RG  V +GY+ N +AT+ A   +GW +TGD+G  
Sbjct: 328 FWRTVAVVDAEDRPL-PPGEVGEIVLRGPTVFKGYWNNAAATQHAFR-NGWHHTGDMGRF 385

Query: 509 APHHSRGRSRRCGGVLVLEGRA--KDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ- 565
                        G L   GRA  K+ I  + GENV P E+E A  +   I   VVIG  
Sbjct: 386 DAD----------GYLFYAGRAPEKELIK-TGGENVYPAEVEGALKQHPAIADAVVIGVP 434

Query: 566 DQRR---PGAIIVPDKEEVLMAA 585
           D +      A+ V    E + A 
Sbjct: 435 DPQWSEAIKAVCVCKPGESIAAD 457

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  106 bits (266), Expect = 2e-24
 Identities = 39/253 (15%), Positives = 82/253 (32%), Gaps = 31/253 (12%)

Query: 56  LEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELL 115
                   A GL   GV   +++++ S N    +     +   GAI +    R +++E+ 
Sbjct: 37  YLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIA 96

Query: 116 HIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDE 175
            +        +     ++ + +A  L S   ++    +               P   + +
Sbjct: 97  FVLGDGAPSVVVAG-TDYRDIVAGVLPSLGGVKKAYAIGD----------GSGPFAPFKD 145

Query: 176 IIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR 235
           +      S                   G+ D    ++T+   G P+G +++  NLL    
Sbjct: 146 LASDTPFSA---------------PEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQS 190

Query: 236 SLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELM----YTAVRNLKDDLQRYQP 291
           SL D       D  L MLP +HV        +   G   +    +   +    D++ ++ 
Sbjct: 191 SLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAA-RDIEAHKV 249

Query: 292 HYMISVPLVYETL 304
             M     +   +
Sbjct: 250 TVMAEFAPMLGNI 262

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  129 bits (326), Expect = 6e-32
 Identities = 43/187 (22%), Positives = 76/187 (40%), Gaps = 17/187 (9%)

Query: 394 KAGVSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTE 452
           +   S G +LP    + F    G ++  G G TE   +  + R      G+ G P+   E
Sbjct: 303 RICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYE 362

Query: 453 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 512
           I++ D   + V P G  G + ++G      Y+ N   ++       W+ +GD     P+ 
Sbjct: 363 IELRDEAGHAV-PDGEVGDLYIKGPSAAVMYWNNREKSRATFL-GEWIRSGDKYCRLPN- 419

Query: 513 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQRR-- 569
                    G  V  GR+ D + +S G+ V P+E+E   ++   + +  V+G        
Sbjct: 420 ---------GCYVYAGRSDDMLKVS-GQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVK 469

Query: 570 PGAIIVP 576
             A +V 
Sbjct: 470 TRAFVVL 476

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  101 bits (254), Expect = 9e-23
 Identities = 63/255 (24%), Positives = 101/255 (39%), Gaps = 36/255 (14%)

Query: 63  FAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSE 122
           FA  LR +GV PEE++ L   ++    VA  G L  G + VV  +  +  + +++  HS 
Sbjct: 61  FASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSH 120

Query: 123 SVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRE 182
           + A+ + +      + + L   A      L+  +     P +        ++E+ID    
Sbjct: 121 ARAV-IASGALVQNVTQAL-ESAEHDGCQLIVSQPRESEPRLAP-----LFEELID---- 169

Query: 183 SRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI----RSLY 238
                     A    K    G DDIA ++Y+SG+TG PKG + TH NL        + + 
Sbjct: 170 ---------AAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL 220

Query: 239 DIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYTAVR----NLKDDLQRYQPHY 293
            I      D   S    +  Y    G  F  S G   +  A R     +   L  ++P  
Sbjct: 221 GIAE---NDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTV 277

Query: 294 MISVPLVYETLYSGI 308
              VP    TLY+ +
Sbjct: 278 FYGVP----TLYANM 288

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  126 bits (319), Expect = 6e-31
 Identities = 63/235 (26%), Positives = 99/235 (42%), Gaps = 45/235 (19%)

Query: 397 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLG-----------SVG 445
           V GG + P  +   +E +GV+V+ GYGLTE+SPV+       ++               G
Sbjct: 299 VVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTG 358

Query: 446 HPINHTEIKIVDAETNEVLPA-G-SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTG 503
            PI    +++ D E   V P  G + G V+++G  +  GY+ N  AT+ AL  DG+  TG
Sbjct: 359 LPIPLVRLRVADEEGRPV-PKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTG 417

Query: 504 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVI 563
           DI                G + ++ R KD I  S GE +  ++LE A +    +++  V+
Sbjct: 418 DIAVWDEE----------GYVEIKDRLKDLIK-SGGEWISSVDLENALMGHPKVKEAAVV 466

Query: 564 GQ-DQR---RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKW 614
                +   RP A++VP                       +E    LL     KW
Sbjct: 467 AIPHPKWQERPLAVVVP----------------RGEKPTPEELNEHLLKAGFAKW 505

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score = 65.6 bits (161), Expect = 2e-11
 Identities = 47/202 (23%), Positives = 75/202 (37%), Gaps = 36/202 (17%)

Query: 63  FAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGA----INVVRGSRSSSEELLHIY 118
              GLR +GV   ++++    N  R L A   +   GA     N     R S +E+ +I 
Sbjct: 60  LMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANP----RLSPKEIAYIL 115

Query: 119 NHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIID 178
           NH+E   L   +P     +         ++  +++         D        +Y+E + 
Sbjct: 116 NHAEDKVLLF-DPNLLPLVEAIRGELKTVQHFVVM---------DEKAPEGYLAYEEALG 165

Query: 179 LGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNL-LHQIR-S 236
                         A                  YT+GTTG PKGV+ +H+ L LH +  S
Sbjct: 166 -EEADPVRV-PERAA--------------CGMAYTTGTTGLPKGVVYSHRALVLHSLAAS 209

Query: 237 LYDIVPAENGDKFLSMLPPWHV 258
           L D       D  L ++P +HV
Sbjct: 210 LVDGTALSEKDVVLPVVPMFHV 231

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 93.1 bits (232), Expect = 5e-20
 Identities = 43/210 (20%), Positives = 82/210 (39%), Gaps = 41/210 (19%)

Query: 430 VIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSA 489
                 P    L S G+PI   E+KI+D +T         G + V+ + V +GY+  P  
Sbjct: 362 FADDNSPGSYKLVSSGNPI--QEVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEE 419

Query: 490 TKQAL--------DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGEN 541
           T+ A             +L TGD+G++               L + GR KD I++  G+N
Sbjct: 420 TRHAFAGKIKDDERSAIYLRTGDLGFLH-----------ENELYVTGRIKDLIIIY-GKN 467

Query: 542 VEPLELEEAALRSSLIRQIVVIGQDQRRPG---AIIVPDKEEVLMAAKRLSIVHADASEL 598
             P ++E + + S                G   A ++ ++ E      +L+++    +  
Sbjct: 468 HYPQDIEFSLMHSP----------LHHVLGKCAAFVIQEEHE-----YKLTVMCEVKNRF 512

Query: 599 SKEKTISLLYGELRKWTSKCSFQIGPIHVV 628
             +     L+ E+ +   + + Q+    +V
Sbjct: 513 MDDVAQDNLFNEIFELVYE-NHQLEVHTIV 541

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 73.5 bits (181), Expect = 8e-14
 Identities = 47/206 (22%), Positives = 77/206 (37%), Gaps = 34/206 (16%)

Query: 56  LEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINV---VRGSRSSSE 112
           L+Q     A  L+  G KP +++ L        + A  G L  G I V           +
Sbjct: 46  LDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLD 105

Query: 113 ELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFS 172
           +   I  +S+ V +              L     ++        + +  P    +IP  +
Sbjct: 106 KAQRIVTNSKPVIV--------------LMIADHIK---KFTADELNTNPK-FLKIPAIA 147

Query: 173 YDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLH 232
            + I      S             ++  +I S+DIA   YTSG+T +PKGVM++H NLL 
Sbjct: 148 LESIELNRSSS-------------WQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLD 194

Query: 233 QIRSLYDIVPAENGDKFLSMLPPWHV 258
            +  ++      +     S LPP H 
Sbjct: 195 NLNKIFTSFHMNDETIIFSWLPPHHD 220

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score = 78.8 bits (195), Expect = 2e-15
 Identities = 50/222 (22%), Positives = 83/222 (37%), Gaps = 47/222 (21%)

Query: 397 VSGGGSL-PMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 455
           V+ G SL P  ++ +    G+ ++  YG TE+       +      G +G   +  +++I
Sbjct: 328 VTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQI 387

Query: 456 VDAETNEVLPAGSKGIVKVRGSQV-----MQGYFKNPSATKQALDEDGWLNTGDIGWIAP 510
           +D + N + P G++G + +R   +       GY  NP  T   +    +   GD G    
Sbjct: 388 IDDKGNVL-PPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDE 445

Query: 511 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRP 570
                      G     GRA D I  S+G  + P E+E A +    + +  VI       
Sbjct: 446 D----------GYFQFMGRADDIIN-SSGYRIGPSEVENALMEHPAVVETAVIS------ 488

Query: 571 GAIIVPDKEEVLMAAKRLSIVHA-----------DASELSKE 601
                PD         R  +V A           D  +L+KE
Sbjct: 489 ----SPDPV-------RGEVVKAFVVLASQFLSHDPEQLTKE 519

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score = 61.5 bits (150), Expect = 5e-10
 Identities = 35/246 (14%), Positives = 87/246 (35%), Gaps = 42/246 (17%)

Query: 27  FTRNCVDAVATRIRISRRNHRF-RVFCESKLEQEILDFAE----------GLRV-IGVKP 74
           F  + +D  A   +  +R       +   K ++ + +F E           L    G++ 
Sbjct: 39  FASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQR 98

Query: 75  EEKLSLFSDNSCRWLVADQGMLAT---GAINVVRGSRSSSEELLHIYNHSESVALAVENP 131
            +++++       W +    +L     G I +    +  S ++L+    S++ A+ V   
Sbjct: 99  GDRVAVVLPRVPEWWLV---ILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAI-VAGD 154

Query: 132 EFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSN 191
           E    +        ++R  +L       V+    +     ++ ++++             
Sbjct: 155 EVIQEVDTVASECPSLRIKLL-------VSEKSCD--GWLNFKKLLN------------- 192

Query: 192 DARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLS 251
           +A   +     GS + +   +TSGT+G PK    ++ +L  + +        +  D   +
Sbjct: 193 EASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWT 252

Query: 252 MLPP-W 256
           +    W
Sbjct: 253 ISDTGW 258

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score = 77.0 bits (190), Expect = 4e-15
 Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 23/111 (20%)

Query: 430 VIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSA 489
                      L S   P     ++IVD++T    P G+ G + V G  V  GY++ P  
Sbjct: 382 AKPCAGGGATSLISYMLPR-SPIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDE 440

Query: 490 TKQAL-----------DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR 529
           +++              E  WL TGD G++             G + + GR
Sbjct: 441 SERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-----------DGKMFIIGR 480

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score = 70.9 bits (174), Expect = 5e-13
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 6/73 (8%)

Query: 192 DARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD------IVPAEN 245
           DA   Y ++       A   YTSG+T  P GV+++H+N+      L              
Sbjct: 170 DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPP 229

Query: 246 GDKFLSMLPPWHV 258
               +S LP +H 
Sbjct: 230 NSALVSWLPFYHD 242

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 68.0 bits (167), Expect = 4e-12
 Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 28/154 (18%)

Query: 407 IDLFYEAIGVKVQVGYGLTESSPVIA-----ARRPTCNVLGSVGHPINHTEIKIVDAETN 461
            + F E  G+K+  G+G TE+   IA       +P     GS+G P    +I+++D +  
Sbjct: 358 FNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKP-----GSIGKPTPGYKIELMDRDGR 412

Query: 462 EVLPAGSKGIVKVRG-----SQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR 516
                G +G + +         +   Y K+P  T++    DG+ +TGD+ W+        
Sbjct: 413 LC-EVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDED----- 465

Query: 517 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEA 550
                G L   GRA D I  ++G  V P E+E A
Sbjct: 466 -----GYLWFVGRADDII-KTSGYKVGPFEVESA 493

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 51.4 bits (124), Expect = 6e-07
 Identities = 46/307 (14%), Positives = 90/307 (29%), Gaps = 69/307 (22%)

Query: 27  FTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAE----------GLRVIGVKPEE 76
           F  + VD  A             ++C+    ++I  F +               G+   +
Sbjct: 57  FAYDVVDVYAR----DSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGD 112

Query: 77  KLSLFSDNSCRWLVADQGMLAT---GAINVVRGSRSSSEELLHIYNHSESVALAVENPEF 133
            + L   +   +      ML     GAI V       + ++++    +    +     + 
Sbjct: 113 YVMLTLKSRYDFWYC---MLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDD 169

Query: 134 FNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDA 193
                +   ++        +  KK+ V  D++E      + + ++           S   
Sbjct: 170 VPEQVDEAHAECGD-----IPLKKAKVGGDVLEG--WIDFRKELE---------ESSPIF 213

Query: 194 RKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFL--- 250
            +     +  ++DI    ++SGT G PK V   +   L  I +       E+        
Sbjct: 214 ERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVA 273

Query: 251 ----------SMLPPWH------VYERACGYFIFSRGIELM--Y---------TAVRNL- 282
                      +   W       VY+     F     +E    Y         T  R L 
Sbjct: 274 DSGWGKCVWGKLYGQWIAGCAVFVYDY--DRFEAKNMLEKASKYGVTTFCAPPTIYRFLI 331

Query: 283 KDDLQRY 289
           K+DL  Y
Sbjct: 332 KEDLSHY 338

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 65.9 bits (160), Expect = 1e-11
 Identities = 48/371 (12%), Positives = 89/371 (23%), Gaps = 64/371 (17%)

Query: 166 EEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETI----GSDDIATYVYTSGTTGNPK 221
           E++      ++  +  + R+    S+  R+      +     +D       + GTTG PK
Sbjct: 49  EQLNFDPIKDVKTIN-DLRQFSDISHCLRQEPVANLVPQGLPADSHPQVYESGGTTGAPK 107

Query: 222 GVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRN 281
            V+     +   I           G        P      A        G      A+R 
Sbjct: 108 YVVAYDAWIEALISWRMSGYQHRPG-------RPSGNTLAAIPTGPHIVGAINKERALR- 159

Query: 282 LKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYE 341
                       +   P   +   S              V               + I  
Sbjct: 160 -----LGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNT------LMNQDIRF 208

Query: 342 GFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGG 401
                     P  L                    LL    V  +++ ++        GG 
Sbjct: 209 LVTT------PPVL------------------RELLKRPEVVLQMKQSL---AQITLGGT 241

Query: 402 SLPMHIDLFYEAI-----GVKVQVGYGLTESSPVIAAR-RPTCNVLGSVGHPINHTEIKI 455
              +++D             +    YG T +  V  +    + +               +
Sbjct: 242 --ELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLITSESQQVIYDSFSPFITYDV 299

Query: 456 VDAETNEVLPAGSKGIVKV---RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 512
           VD+ T + +  G +G V V             +  +A +      G+        I P  
Sbjct: 300 VDSITAQTVEYGERGNVIVTHLSPWAFYPRVAERDTAIR-LPGVSGFAGDRLAD-IEPLK 357

Query: 513 SRGRSRRCGGV 523
                +   GV
Sbjct: 358 ISEGRKVIEGV 368

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 60.6 bits (148), Expect = 9e-10
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 9/89 (10%)

Query: 164 IVEEIPVFSYD-EIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYV-YTSGTTGNPK 221
           +V  I    ++ ++     ++ K    +N            S D+A YV YTSGTTGNPK
Sbjct: 146 LVHLIHNIQFNGQVEIFEEDTIKIREGTNLHV------PSKSTDLA-YVIYTSGTTGNPK 198

Query: 222 GVMLTHKNLLHQIRSLYDIVPAENGDKFL 250
           G ML HK + +      + +     D+  
Sbjct: 199 GTMLEHKGISNLKVFFENSLNVTEKDRIG 227

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 59.8 bits (146), Expect = 1e-09
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 8/77 (10%)

Query: 175 EIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYV-YTSGTTGNPKGVMLTHKNLLHQ 233
           + +             +  +       +   +   Y+ YTSG+TGNPKGV ++  NL   
Sbjct: 119 QTVSAEELLENEGGSVSQDQ------WVKEHETF-YIIYTSGSTGNPKGVQISAANLQSF 171

Query: 234 IRSLYDIVPAENGDKFL 250
              +    P   G  FL
Sbjct: 172 TDWICADFPVSGGKIFL 188

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.9 bits (144), Expect = 2e-09
 Identities = 60/449 (13%), Positives = 138/449 (30%), Gaps = 108/449 (24%)

Query: 10  SSLILSSL-DY---HRHGFRVF---TRNCVDAVATRIRISRRNHRFR-VFCE-----SKL 56
           + + L     Y    +  F++F    +NC         + +  ++    +       S +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 57  EQEILDFAEGLRVIGVKPEEKLSL--------------FSDNSCRWLV--ADQGMLATGA 100
           +  I      LR +      +  L              F + SC+ L+    + +  T  
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-NLSCKILLTTRFKQV--TDF 280

Query: 101 INVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMR--FIILLWGKKS 158
           ++    +  S +         E  +L ++   + +   + L  +        + +  +  
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLK---YLDCRPQDLPREVLTTNPRRLSIIAESI 337

Query: 159 SVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDD--IATYVY---- 212
                  +     + D++  +   S     +  + RK +   ++      I T +     
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVL-EPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396

Query: 213 TSGTTGNPKGVM--LTHKNLLHQ-----IRSLYDI-----VPAEN----------GDKFL 250
                 +   V+  L   +L+ +       S+  I     V  EN               
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456

Query: 251 SMLPPWHVY-ERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETL-YSGI 308
                  +       YF +S    + +    +LK       P  M    +V+  L +  +
Sbjct: 457 KTFDSDDLIPPYLDQYF-YSH---IGH----HLK---NIEHPERMTLFRMVF--LDFRFL 503

Query: 309 QKQI---FTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWAR 365
           +++I    T+  A   +   L ++        + Y+ + +  N   P Y          R
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQL--------KFYKPY-ICDN--DPKY---------ER 543

Query: 366 IICAILWPLHLLAEKLVYKK----IQSAI 390
           ++ AIL  L  + E L+  K    ++ A+
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLRIAL 572

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 8e-06
 Identities = 82/552 (14%), Positives = 149/552 (26%), Gaps = 209/552 (37%)

Query: 110 SSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIP 169
           S EE+ HI                 + ++ TL      R    L  K+  +    VEE+ 
Sbjct: 47  SKEEIDHIIMSK-------------DAVSGTL------RLFWTLLSKQEEMVQKFVEEVL 87

Query: 170 VFSYDEIIDLGRESRKAFSDSNDARKHYKYETIG-SDDIATYVYTSGTTGNPKGVMLTHK 228
             +Y  ++                    K E    S     Y+                 
Sbjct: 88  RINYKFLMS-----------------PIKTEQRQPSMMTRMYIE---------------- 114

Query: 229 NLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQR 288
               Q   LY+            +   ++V          SR ++        L+  L  
Sbjct: 115 ----QRDRLYNDNQ---------VFAKYNV----------SR-LQP----YLKLRQALLE 146

Query: 289 YQPHYMISVPLVYETLY--SGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLT 346
            +P   +        +    G  K             +   ++ F         + F L 
Sbjct: 147 LRPAKNV-------LIDGVLGSGKTWVALDVCLS--YKVQCKMDF---------KIFWLN 188

Query: 347 -RNQKQPSYLVALIDWLWARI----------ICAILWPLHLLAEKL-------VYKKIQS 388
            +N   P  ++ ++  L  +I             I   +H +  +L        Y+    
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN--- 245

Query: 389 AIGISKAGVSGGGSL--------PMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNV 440
                         L            + F   +  K+ +    T    V        + 
Sbjct: 246 -------------CLLVLLNVQNAKAWNAF--NLSCKILL---TTRFKQVT-------DF 280

Query: 441 LGS--VGH-PINHTEIKIVDAETNEVLPAGSKGIVKVRGS----QVMQGYFKNPSATKQ- 492
           L +    H  ++H  + +   E   +L    K  +  R      +V+     NP      
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLL---LK-YLDCRPQDLPREVLTT---NPRRLSII 333

Query: 493 -ALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAA 551
                D  L T D  W   H              +      TI+ S+   +EP E  +  
Sbjct: 334 AESIRD-GLATWD-NW--KH--------------VNCDKLTTIIESSLNVLEPAEYRK-- 373

Query: 552 LRSSLIRQIVVIGQDQRRPGAIIV-----PDKEEVLMAAKRL---SIVHADASELSKEKT 603
               +  ++ V       P  ++        K +V++   +L   S+V        KE T
Sbjct: 374 ----MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ----PKEST 425

Query: 604 ISL--LYGELRK 613
           IS+  +Y EL+ 
Sbjct: 426 ISIPSIYLELKV 437

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 9e-05
 Identities = 49/373 (13%), Positives = 105/373 (28%), Gaps = 121/373 (32%)

Query: 67  LRVIGV---KPEEKLSLFSDNSCR----WLVADQGMLATGAINVVRGSRSSSEELLHIYN 119
           LR+      K EE +  F +   R    +L++    + T        +R   E+   +YN
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP---IKTEQRQPSMMTRMYIEQRDRLYN 121

Query: 120 HSESVA-LAVENPEFFNRIAETLCSKAAMRFIILLWGK----KSSVAPDIVEEIPVFSYD 174
            ++  A   V   + + ++ + L      + +++  G     K+ VA D+          
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI-DGVLGSGKTWVALDVCL-------- 172

Query: 175 EIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVY--TSGTTGNPKGVMLTHKNLLH 232
                  + +  F                       ++        +P+ V+   + LL+
Sbjct: 173 ---SYKVQCKMDFK----------------------IFWLNLKNCNSPETVLEMLQKLLY 207

Query: 233 QIRSLYD---------IVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLK 283
           QI   +           +   +    L  L     YE      +      L         
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC--LLV------L--------- 250

Query: 284 DDLQRYQPHYMISVPLVYETLYSGIQ-KQIFTSSAAR-RVVARALIRISFAYTAFKRIYE 341
            ++Q             +      +  K + T+   R + V   L   +  + +      
Sbjct: 251 LNVQN---------AKAWNAF--NLSCKILLTT---RFKQVTDFLSAATTTHISLDHHSM 296

Query: 342 GFCLTRNQKQPSYLVALIDWLWARI------ICAILWPLH--LLAEKL------------ 381
               T ++        L+ +L  R       +     P    ++AE +            
Sbjct: 297 TL--TPDEV----KSLLLKYLDCRPQDLPREVLTTN-PRRLSIIAESIRDGLATWDNWKH 349

Query: 382 -VYKKIQSAIGIS 393
               K+ + I  S
Sbjct: 350 VNCDKLTTIIESS 362

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 57.5 bits (140), Expect = 8e-09
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 201 TIGSDDIATYV-YTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFL 250
            +  D+   Y+ YTSG+TGNPKGV +T+  L+   +   +    + G  FL
Sbjct: 140 AVKGDENF-YIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFL 189

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 56.9 bits (138), Expect = 2e-08
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 9/77 (11%)

Query: 175 EIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYV-YTSGTTGNPKGVMLTHKNLLHQ 233
             + +  ++R     S+ A        I  +D A Y+ YTSGTTG PKG + TH N+   
Sbjct: 583 TTLFIDDQTRFEEQASDPAT------AIDPNDPA-YIMYTSGTTGKPKGNITTHANIQGL 635

Query: 234 IRSLYDIVPAENGDKFL 250
           ++ + D +   + D FL
Sbjct: 636 VKHV-DYMAFSDQDTFL 651

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 56.1 bits (136), Expect = 2e-08
 Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 163 DIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYV-YTSGTTGNPK 221
           +  + + +    +++D   +S      + D            +  A Y+ YTSG+TG PK
Sbjct: 135 NNFDGVELPPETKVLDTKNQSFIENLSTQDTSDIL--NNYPENLDA-YLLYTSGSTGTPK 191

Query: 222 GVMLTHKNLLHQIRSLYDIVPAENGDKF 249
           GV ++  NL     +   ++        
Sbjct: 192 GVRVSRHNLSSFSDAWGKLIGNVAPKSL 219

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 54.5 bits (132), Expect = 6e-08
 Identities = 54/327 (16%), Positives = 94/327 (28%), Gaps = 93/327 (28%)

Query: 175 EIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYV-YTSGTTGNPKGVMLTHK---NL 230
            ++ L        ++    R H    ++  DD   Y+ +TSGTTG PKGV ++H    + 
Sbjct: 119 SLVSLSEIESAKLAEMPYERTH----SVKGDDNY-YIIFTSGTTGQPKGVQISHDNLLSF 173

Query: 231 LH--QIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQR 288
            +     + +D+       + L+  P           + F                D   
Sbjct: 174 TNWMIEDAAFDVPK---QPQMLAQPP-----------YSF----------------D--- 200

Query: 289 YQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRN 348
                 +SV     TL  G                   +   F             +   
Sbjct: 201 ------LSVMYWAPTLALG----------GTLFALPKELVADFKQ--LFTTIAQLPVGIW 242

Query: 349 QKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPM-HI 407
              PS+    +                + A                     G  L +   
Sbjct: 243 TSTPSFADMAMLSDDFC-------QAKMPALTHF--------------YFDGEELTVSTA 281

Query: 408 DLFYEAI-GVKVQVGYGLTESS------PVIAARRPTCNVLGSVGHPINHTEIKIVDAET 460
              +E     K+   YG TE++       +          L  +G+P   +   I+D + 
Sbjct: 282 RKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRL-PIGYPKPDSPTYIIDEDG 340

Query: 461 NEVLPAGSKGIVKVRGSQVMQGYFKNP 487
            E+  +G +G + V G  V +GY  NP
Sbjct: 341 KEL-SSGEQGEIIVTGPAVSKGYLNNP 366

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 51.3 bits (124), Expect = 7e-07
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 7/53 (13%)

Query: 201 TIGSDDIATYV-YTSGTTGNPKGVMLTHKNL--LHQIRSLYDIVPAENGDKFL 250
              +D IA Y+ ++SGTTG PK +  TH  +  L   +S     P     +FL
Sbjct: 160 CFAADQIA-YINFSSGTTGRPKAIACTHAGITRLCLGQSFLAFAP---QMRFL 208

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	641
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	6e-56
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	5e-34
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	4e-16
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	2e-32
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	5e-17
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	1e-23
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	1e-20
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	8e-21
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	2e-11
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	5e-20
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	3e-12
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	9e-19
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	4e-12

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  198 bits (505), Expect = 6e-56
 Identities = 107/638 (16%), Positives = 194/638 (30%), Gaps = 136/638 (21%)

Query: 27  FTRNCVDAVATR-------IRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLS 79
              NC+D            I       + +     +L +++  FA  L  +G+K  + ++
Sbjct: 73  LAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVA 132

Query: 80  LFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAE 139
           ++        VA       GA++ V     S E +      S S  +   +        E
Sbjct: 133 IYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITAD--------E 184

Query: 140 TLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDS--NDARKHY 197
            + +  ++     +     +     VE + V          +E R  +       A   +
Sbjct: 185 GVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEH 244

Query: 198 KYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLL-HQIRSLYDIVPAENGDKFLSMLPPW 256
           + E + ++D    +YTSG+TG PKGV+ T    L +   +   +     GD +       
Sbjct: 245 QPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVG 304

Query: 257 HVYERACGYF--IFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFT 314
            V   +   +  +      LM+  V N                      +   + K    
Sbjct: 305 WVTGHSYLLYGPLACGATTLMFEGVPNWPTP----------------ARMCQVVDKH--- 345

Query: 315 SSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPL 374
                        +++  YTA                P+ + AL+      I       L
Sbjct: 346 -------------QVNILYTA----------------PTAIRALMAEGDKAIEGTDRSSL 376

Query: 375 HLLAEKLVYKKIQSAIGISKAGVSGGGSLPMH-IDLFYEAIG---VKVQVGYGLTESSPV 430
            +L                    S G  +     + +++ IG     V   +  TE+   
Sbjct: 377 RIL-------------------GSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGF 417

Query: 431 IAARRPTCNVL--GSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQ--VMQGYFKN 486
           +    P    L  GS   P    +  +VD E +      ++G + +  S     +  F +
Sbjct: 418 MITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQ-EGATEGNLVITDSWPGQARTLFGD 476

Query: 487 PSATKQALDE--DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEP 544
               +Q           +GD                 G   + GR  D + +S G  +  
Sbjct: 477 HERFEQTYFSTFKNMYFSGDGARRDED----------GYYWITGRVDDVLNVS-GHRLGT 525

Query: 545 LELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTI 604
            E+E A +    I +  V+G             K + + A     +      E S E   
Sbjct: 526 AEIESALVAHPKIAEAAVVGIPH--------AIKGQAIYAY----VTLNHGEEPSPE--- 570

Query: 605 SLLYGELRKWTSKCSFQIGP------IHVVDE-PFTVN 635
             LY E+R W      +IGP      +H  D  P T +
Sbjct: 571 --LYAEVRNW---VRKEIGPLATPDVLHWTDSLPKTRS 603

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  134 bits (337), Expect = 5e-34
 Identities = 73/390 (18%), Positives = 139/390 (35%), Gaps = 30/390 (7%)

Query: 223 VMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA---V 279
           V+L   NLL  + ++   +        +    P             +  + +   A   +
Sbjct: 115 VLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVPERAACGM 174

Query: 280 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRI 339
                     +        LV  +L + +      S     +    +  ++     +   
Sbjct: 175 AYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAAT 234

Query: 340 YEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSG 399
             G        +      +  +    +      P   LA     +     +   +  V G
Sbjct: 235 LVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVG 294

Query: 400 GGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNV-----------LGSVGHPI 448
           G + P  +   +E +GV+V+ GYGLTE+SPV+       ++               G PI
Sbjct: 295 GSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPI 354

Query: 449 NHTEIKIVDAETNEVLP-AGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW 507
               +++ D E   V     + G V+++G  +  GY+ N  AT+ AL  DG+  TGDI  
Sbjct: 355 PLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAV 414

Query: 508 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG--- 564
                         G + ++ R KD ++ S GE +  ++LE A +    +++  V+    
Sbjct: 415 WDE----------EGYVEIKDRLKD-LIKSGGEWISSVDLENALMGHPKVKEAAVVAIPH 463

Query: 565 -QDQRRPGAIIVPDKEEVLMAAKRLSIVHA 593
            + Q RP A++VP  E+         ++ A
Sbjct: 464 PKWQERPLAVVVPRGEKPTPEELNEHLLKA 493

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score = 79.2 bits (194), Expect = 4e-16
 Identities = 53/273 (19%), Positives = 91/273 (33%), Gaps = 32/273 (11%)

Query: 56  LEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELL 115
           + Q       GLR +GV   ++++    N  R L A   +   GA+      R S +E+ 
Sbjct: 46  VYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIA 105

Query: 116 HIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDE 175
           +I NH+E   L + +P     +         ++  +++  K         E +   +   
Sbjct: 106 YILNHAEDKVL-LFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPV 164

Query: 176 IIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR 235
            +                                  YT+GTTG PKGV+ +H+ L+    
Sbjct: 165 RVP-------------------------ERAACGMAYTTGTTGLPKGVVYSHRALVLHSL 199

Query: 236 --SLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDD----LQRY 289
             SL D       D  L ++P +HV      Y     G + +    R             
Sbjct: 200 AASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGE 259

Query: 290 QPHYMISVPLVYETLYSGIQKQIFTSSAARRVV 322
              +   VP V+  L   ++         RR+V
Sbjct: 260 GVTFTAGVPTVWLALADYLESTGHRLKTLRRLV 292

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  129 bits (325), Expect = 2e-32
 Identities = 64/267 (23%), Positives = 106/267 (39%), Gaps = 21/267 (7%)

Query: 343 FCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGS 402
             L    ++  +L +L D+     +             L+ K   S   + +    G   
Sbjct: 259 VVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLS--NLHEIASGGAPL 316

Query: 403 LPMHIDLFYEAIGV-KVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETN 461
                +   +   +  ++ GYGLTE++  I       +  G+VG  +   E K+VD +T 
Sbjct: 317 SKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTG 376

Query: 462 EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCG 521
           + L    +G + VRG  +M GY  NP AT   +D+DGWL++GDI +              
Sbjct: 377 KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEH-------- 428

Query: 522 GVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD----QRRPGAIIVPD 577
               +  R K  I    G  V P ELE   L+   I    V G         P A++V +
Sbjct: 429 --FFIVDRLKSLIKYK-GYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLE 485

Query: 578 KEEVLMAAKRLSIVHADASELSKEKTI 604
             + +   +   IV   AS+++  K +
Sbjct: 486 HGKTMTEKE---IVDYVASQVTTAKKL 509

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score = 82.3 bits (202), Expect = 5e-17
 Identities = 47/303 (15%), Positives = 96/303 (31%), Gaps = 27/303 (8%)

Query: 56  LEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELL 115
             +  +  AE ++  G+    ++ + S+NS ++ +   G L  G          +  ELL
Sbjct: 53  YFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELL 112

Query: 116 HIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDE 175
           +  N S+   + V + +   +I         ++ II++  K        +          
Sbjct: 113 NSMNISQPTVVFV-SKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTF----VTS 167

Query: 176 IIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR 235
            +  G        +S D              IA  + +SG+TG PKGV L H+    +  
Sbjct: 168 HLPPGFNEYDFVPESFDR----------DKTIALIMNSSGSTGLPKGVALPHRTACVRFS 217

Query: 236 SLYDIVPAENGDKFLSMLPPWHVYERACGYFIFS------RGIELMYTAVRNLKDDLQRY 289
              D +         ++L     +     +          R + +           LQ Y
Sbjct: 218 HARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDY 277

Query: 290 QPHYMISVPLVYETLYSGIQKQIFTSSAARRVVA------RALIRISFAYTAFKRIYEGF 343
           +    + VP ++           +  S    + +      + +            I +G+
Sbjct: 278 KIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGY 337

Query: 344 CLT 346
            LT
Sbjct: 338 GLT 340

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  103 bits (258), Expect = 1e-23
 Identities = 44/250 (17%), Positives = 83/250 (33%), Gaps = 27/250 (10%)

Query: 352 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLF 410
            S    +ID             L LL           ++   +   S G  +   + + +
Sbjct: 322 YSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWY 381

Query: 411 YEAIG---VKVQVGYGLTESSPVIAARRPTCNV---LGSVGHPINHTEIKIVDAETNEVL 464
            E IG   + +   Y  TES   +             GS   P    +  ++D  T E L
Sbjct: 382 SEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEEL 441

Query: 465 -PAGSKGIVKVRGS--QVMQGYFKNPSATKQAL--DEDGWLNTGDIGWIAPHHSRGRSRR 519
             + ++G++ V+ +     +  +KN             G+  TGD               
Sbjct: 442 NTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKD-------- 493

Query: 520 CGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD----QRRPGAIIV 575
             G + + GR  D + +S G  +   E+E A +   ++ +  V+G +     +   A +V
Sbjct: 494 --GYIWILGRVDDVVNVS-GHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVV 550

Query: 576 PDKEEVLMAA 585
              +     A
Sbjct: 551 LKNKSSWSTA 560

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 93.8 bits (232), Expect = 1e-20
 Identities = 46/295 (15%), Positives = 89/295 (30%), Gaps = 24/295 (8%)

Query: 27  FTRNCVDAVATR-------IRISRRNHRFRVFCESKLEQEILDFAEGLRV-IGVKPEEKL 78
              NCVD  A +       I       +       +L +E+   A+ L   +GV+  + +
Sbjct: 60  ACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTV 119

Query: 79  SLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIA 138
           +++       ++    +   GAI+ V  +  SS  L    N  +S  +   +        
Sbjct: 120 AVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNR---- 175

Query: 139 ETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYK 198
                K      I+    + +     V      +   +           ++    + +Y 
Sbjct: 176 ---GGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYP 232

Query: 199 YETIGSDDIATYVYTSGTTGNPKGVMLTHKN-LLHQIRSLYDIVPAENGDKFLSMLPPWH 257
              + S+D    +YTSG+TG PKGV  +    LL  + ++         D F +      
Sbjct: 233 CTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGW 292

Query: 258 VYER--------ACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETL 304
           +             G           Y       D +  ++       P     L
Sbjct: 293 ITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLL 347

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score = 93.9 bits (232), Expect = 8e-21
 Identities = 53/260 (20%), Positives = 95/260 (36%), Gaps = 17/260 (6%)

Query: 340 YEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSG 399
            +G  +   + +P   + L+       + A    L  LA    +      +   +     
Sbjct: 221 LDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFA 280

Query: 400 GGSLP-MHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDA 458
           G ++P   ++  ++ +  +    YG TE+   +  R+P      + G       ++I   
Sbjct: 281 GATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGG 340

Query: 459 ETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSR 518
               V       ++         GY   P AT + L +DGW  T D+    P        
Sbjct: 341 VDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE------- 392

Query: 519 RCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AII 574
              G + + GR  D I+   GEN+ P E+E     +  + ++VVIG   +R G    A +
Sbjct: 393 ---GTVRILGRVDDMIISG-GENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACV 448

Query: 575 VPDKEEVLMAAKRLSIVHAD 594
           VP   E L A    +   + 
Sbjct: 449 VPRLGETLSADALDTFCRSS 468

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score = 64.7 bits (156), Expect = 2e-11
 Identities = 42/257 (16%), Positives = 83/257 (32%), Gaps = 33/257 (12%)

Query: 56  LEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELL 115
           L   +   A  L   G++P++++++ + NS   ++A   +   GA+  +   R  S EL 
Sbjct: 35  LRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELA 94

Query: 116 HIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDE 175
            +    E  A  +       ++A+ +    +   II L         D+V +   +SY  
Sbjct: 95  ELIKRGEMTAAVIAVGR---QVADAIFQSGSGARIIFLG--------DLVRDGEPYSYGP 143

Query: 176 IIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR 235
            I+  +                          A   YTSGTTG PK  ++  +    ++ 
Sbjct: 144 PIEDPQRE--------------------PAQPAFIFYTSGTTGLPKAAIIPQRAAESRVL 183

Query: 236 SLYDIV--PAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHY 293
            +   V       +  L ++P +HV                          D  +     
Sbjct: 184 FMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQE 243

Query: 294 MISVPLVYETLYSGIQK 310
            ++      T    +  
Sbjct: 244 QVTSLFATPTHLDALAA 260

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score = 91.5 bits (226), Expect = 5e-20
 Identities = 48/226 (21%), Positives = 87/226 (38%), Gaps = 14/226 (6%)

Query: 361 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQV 420
             + + I      +  L    V       I   +  ++ G +    +   ++   V    
Sbjct: 247 VKFEQYINQKEITVITLPPTYVVHLDPERILSIQTLITAGSATSPSLVNKWKE-KVTYIN 305

Query: 421 GYGLTESSPVIAARRPTCNVLG---SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 477
            YG TE++        T   +G    +G PI +T+I IVD E  ++   G  G + + G 
Sbjct: 306 AYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGE 364

Query: 478 QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLS 537
            + +GY+K P  T Q   ++ ++  G+  +     +R       G +   GR  + + + 
Sbjct: 365 GLARGYWKRPELTSQKFVDNPFV-PGEKLYKTGDQAR---WLSDGNIEYLGRIDNQVKIR 420

Query: 538 TGENVEPLELEEAALRSSLIRQIVVIG----QDQRRPGAIIVPDKE 579
            G  VE  E+E   L+   I +  V      Q+Q    A  V +K 
Sbjct: 421 -GHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKH 465

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score = 67.2 bits (163), Expect = 3e-12
 Identities = 36/268 (13%), Positives = 74/268 (27%), Gaps = 37/268 (13%)

Query: 56  LEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELL 115
           L  +    A      G+  +  + +  + S    +    +L  G   V        E + 
Sbjct: 54  LNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQ 113

Query: 116 HIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDE 175
           +I + S++  L  +     + I     +     F       +      +  +        
Sbjct: 114 YILDDSQARMLLTQ-KHLVHLIHNIQFNGQVEIFEEDTIKIREGTNLHVPSK-------- 164

Query: 176 IIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR 235
                                       S D+A  +YTSGTTGNPKG ML HK + +   
Sbjct: 165 ----------------------------STDLAYVIYTSGTTGNPKGTMLEHKGISNLKV 196

Query: 236 SLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMI 295
              + +     D+                +     G  L       + D ++  Q     
Sbjct: 197 FFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQK 256

Query: 296 SVPLVYETLYSGIQKQIFTSSAARRVVA 323
            + ++       +        + + ++ 
Sbjct: 257 EITVITLPPTYVVHLDPERILSIQTLIT 284

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score = 87.7 bits (216), Expect = 9e-19
 Identities = 47/241 (19%), Positives = 80/241 (33%), Gaps = 17/241 (7%)

Query: 352 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY 411
           P     LI+     I   +     +        +      +    V G            
Sbjct: 261 PDDAFPLIEREKVTITALVPPLAMVW-MDAASSRRDDLSSLQVLQVGGAKFSAEAARRVK 319

Query: 412 EAIGVKVQVGYGLTESSPVIAARRPTCNV-LGSVGHPINHTEIKIVDAETNEVLPAGSKG 470
              G  +Q  +G+ E             + + + G P++  +   V  + +  +  G  G
Sbjct: 320 AVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETG 379

Query: 471 IVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRA 530
            +  RG   ++GY+K       +  EDG+  TGDI  +             G +V+EGRA
Sbjct: 380 HLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRD----------GYIVVEGRA 429

Query: 531 KDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAK 586
           KD I    GE V   E+E   L    +    ++    +    R    I+P  E    A  
Sbjct: 430 KDQINRG-GEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAEL 488

Query: 587 R 587
           +
Sbjct: 489 K 489

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score = 66.6 bits (161), Expect = 4e-12
 Identities = 37/252 (14%), Positives = 85/252 (33%), Gaps = 25/252 (9%)

Query: 56  LEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELL 115
           L+      A G + +G++ ++++ +   N   +      +   GA+ V       S E+ 
Sbjct: 56  LDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEIT 115

Query: 116 HIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDE 175
           +    +E+ A  +                 +      L  +  S  P +   I     +E
Sbjct: 116 YFCEFAEAAAYII-------------PDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEE 162

Query: 176 IIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR 235
            + L           +   +  K   + S D+A    + G+TG  K +  TH + ++ ++
Sbjct: 163 FLPL----------EDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLK 212

Query: 236 SLYDIVPAENGDKFLSMLPPWHVY--ERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHY 293
              ++   ++   +L+ LP  H Y         +   G  ++ +   +  D     +   
Sbjct: 213 RSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREK 272

Query: 294 MISVPLVYETLY 305
           +    LV     
Sbjct: 273 VTITALVPPLAM 284

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	641
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0
d2ayia1	406	Aminopeptidase T {Thermus thermophilus [TaxId: 274	82.61

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=0  Score=547.03  Aligned_cols=506  Identities=17%  Similarity=0.181  Sum_probs=402.3

Q ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHHCCC---CCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHH
Q ss_conf             01122235898784210----001235432046---98259974899999999999999973999999899980897018
Q 006530           16 SLDYHRHGFRVFTRNCV----DAVATRIRISRR---NHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRW   88 (641)
Q Consensus        16 ~~~~~~~~~~~~~~~~~----~~~~~~~a~~~~---~~~~~~~Ty~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~n~~e~   88 (641)
                      ..+||.....++++|+.    +..++++|+++.   .+..+++||+||.++++++|++|.++|+++||+|+++++|++++
T Consensus        62 ~~~wf~~~~~N~~~n~ldrh~~~~~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~  141 (643)
T d1pg4a_          62 SIKWYEDGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEA  141 (643)
T ss_dssp             EEEESTTCEECHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHH
T ss_pred             CCEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHH
T ss_conf             77369897131999999999974999879999736999856970999999999999999972989999999951544489


Q ss_pred             HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCEEEEECCHH--------HHHHHHHHHC--CCCCCCEEEEEECCCC
Q ss_conf             99999999649889854899999999999871284399964914--------5999998640--2646538999707788
Q 006530           89 LVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVALAVENPE--------FFNRIAETLC--SKAAMRFIILLWGKKS  158 (641)
Q Consensus        89 iv~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~--------~~~~~~~~~~--~~~~~~~~~~~~~~~~  158 (641)
                      ++++|||+++|++++++++.++.+++.+++++++++++|+++..        ....+.+...  ....++.++.......
T Consensus       142 iv~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~  221 (643)
T d1pg4a_         142 AVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGS  221 (643)
T ss_dssp             HHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCC
T ss_pred             HHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHCCCCEEEECCHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCC
T ss_conf             99999999859599931888999999999985599899984314431333210344788872445566407999646776


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH-HHHH
Q ss_conf             888875578773228899995263110268970110013457889898799993799999703577628999999-9997
Q 006530          159 SVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQ-IRSL  237 (641)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~~~~~-~~~~  237 (641)
                      .....   ......+.+........             ..+...+++++++|+|||||||.||||++||++++.. ....
T Consensus       222 ~~~~~---~~~~~~~~~~~~~~~~~-------------~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~  285 (643)
T d1pg4a_         222 DIDWQ---EGRDLWWRDLIEKASPE-------------HQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTF  285 (643)
T ss_dssp             CCCCC---BTTEEEHHHHHTTSCSC-------------CCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHH
T ss_pred             CCCCC---CCCCHHHHHHHCCCCCC-------------CCCCCCCCCCEEEEEECCCCCCCCCEEEECCHHHHHHHHHHH
T ss_conf             55644---44201334432025754-------------577779988839999088756678779983279999999999


Q ss_pred             HHHCCCCCCCEEEEECCHHHHHHHHH-HHHHHHCCEEEEEC-------CHHHHHHHHHHHCCEEEEECCHHHHHHHHHHH
Q ss_conf             65469999978999789145899988-58654237058752-------53779999966378299717078999999999
Q 006530          238 YDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQ  309 (641)
Q Consensus       238 ~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~v~~-------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  309 (641)
                      ...+++.++|++++.+|++|++++.. .+.+|.+|+++++.       ++..+++.++++++|+++++|+++..+.+...
T Consensus       286 ~~~~~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~  365 (643)
T d1pg4a_         286 KYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGD  365 (643)
T ss_dssp             HHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGG
T ss_pred             HHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHCCC
T ss_conf             99619898878999277699888899999999858899995688887999999999999799399805999999985751


Q ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98741227999999999987687888876730620234778960479999889999887432246788889999998864
Q 006530          310 KQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSA  389 (641)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (641)
                      ...                                                                         -..+
T Consensus       366 ~~~-------------------------------------------------------------------------~~~d  372 (643)
T d1pg4a_         366 KAI-------------------------------------------------------------------------EGTD  372 (643)
T ss_dssp             GGT-------------------------------------------------------------------------TTCC
T ss_pred             HHC-------------------------------------------------------------------------CCCC
T ss_conf             002-------------------------------------------------------------------------4568


Q ss_pred             CCCCEEEEEECCCCCHHH-HHHHHHC---CCEEEECCCCCCCCCEEEECCCC--CCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf             098216996037899559-9999980---99046514655556702204899--97645324676890799963899865
Q 006530          390 IGISKAGVSGGGSLPMHI-DLFYEAI---GVKVQVGYGLTESSPVIAARRPT--CNVLGSVGHPINHTEIKIVDAETNEV  463 (641)
Q Consensus       390 l~~~r~i~~gg~~l~~~l-~~~~~~~---g~~i~~~yG~tE~~~~~~~~~~~--~~~~~~~G~p~~~~~i~i~d~~~~~~  463 (641)
                      ++++|.+.++|+++++++ +.+.+.+   ++++.+.||+||+++.+....+.  ..+++++|.|++|++++|+|+ ++++
T Consensus       373 l~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd~-~g~~  451 (643)
T d1pg4a_         373 RSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDN-EGHP  451 (643)
T ss_dssp             CTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECT-TCCB
T ss_pred             CCCEEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECHHHCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECC-CCCC
T ss_conf             876379999867899999999999858888639972632120665782488766777776630447978999989-9989


Q ss_pred             CCCCCCCEEEEEC--CCCCCCCCCCCHHHHHCC--CCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCEEEECCC
Q ss_conf             7899973499924--753333369911122005--989963368536771788889743459669996214552780896
Q 006530          464 LPAGSKGIVKVRG--SQVMQGYFKNPSATKQAL--DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTG  539 (641)
Q Consensus       464 ~~~g~~Gel~v~g--~~~~~gY~~~~~~~~~~~--~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G  539 (641)
                      ++.|+.|||++++  |+++.||+++++.+.+++  ..+|||+|||+|++++          ||.+++.||+||+|++ +|
T Consensus       452 ~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~----------dG~l~i~GR~dd~ik~-~G  520 (643)
T d1pg4a_         452 QEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDE----------DGYYWITGRVDDVLNV-SG  520 (643)
T ss_dssp             CCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECT----------TSCEEEEEESSSEEEE-TT
T ss_pred             CCCCCEEEEEEECCCCCCCCCCCCCHHHCHHHHCCCCCCEEECCCEEEECC----------CCEEEEECCCCCEEEE-CC
T ss_conf             889965799995688865550057822343212026898587487899989----------9209995266418998-99


Q ss_pred             EEECCHHHHHHHHCCCCCCEEEEEECCCC----CEEEEEECCHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             01216776999724945134899935998----03899952978999999873998789200271999999999999672
Q 006530          540 ENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWT  615 (641)
Q Consensus       540 ~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~  615 (641)
                      ++|+|.|||++|.+||+|.||+|+|.+++    .++++|+++++.             ..+.....+++++++++|+.|+
T Consensus       521 ~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~~-------------~~~~~~~~~i~~~~~~~L~~~~  587 (643)
T d1pg4a_         521 HRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGE-------------EPSPELYAEVRNWVRKEIGPLA  587 (643)
T ss_dssp             EEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTC-------------CCCHHHHHHHHHHHHHHTCGGG
T ss_pred             EEECHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEEEECCCC-------------CCCHHHHHHHHHHHHHHCCCCC
T ss_conf             999889999999849982569999888799985999999978999-------------9998899999999985388666


Q ss_pred             CCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf             2699741238980689987878003
Q 006530          616 SKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       616 ~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                           .|+.|+++++.|.+.+||+-
T Consensus       588 -----vP~~i~~v~~lP~T~sGKi~  607 (643)
T d1pg4a_         588 -----TPDVLHWTDSLPKTRSGKIM  607 (643)
T ss_dssp             -----CCSEEEECSCCCBCTTSCBC
T ss_pred             -----CCCEEEEECCCCCCCCCCCC
T ss_conf             -----86489997988879986822

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=527.78  Aligned_cols=516  Identities=16%  Similarity=0.168  Sum_probs=399.2

Q ss_pred             CHHHHHHHHH----HHHHHHHHHHHHHHHHHCCC---CCCEEEEEHHHHHHHHHHHHHHHH-HCCCCCCCEEEEECCCCH
Q ss_conf             0011222358----98784210001235432046---982599748999999999999999-739999998999808970
Q 006530           15 SSLDYHRHGF----RVFTRNCVDAVATRIRISRR---NHRFRVFCESKLEQEILDFAEGLR-VIGVKPEEKLSLFSDNSC   86 (641)
Q Consensus        15 ~~~~~~~~~~----~~~~~~~~~~~~~~~a~~~~---~~~~~~~Ty~el~~~~~~lA~~L~-~~Gi~~Gd~Vai~~~n~~   86 (641)
                      ....||...-    .+.+++++++.|+++|+++.   +++.+++||+||.++++++|++|. ++|+++||+|+++++|++
T Consensus        48 ~~~~wf~~~~lN~~~n~ldr~a~~~pd~~Ali~~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~  127 (640)
T d1ry2a_          48 QNNAWFLNGQLNACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVP  127 (640)
T ss_dssp             TTCCBSTTCEECHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCH
T ss_conf             77858899745399999999996298987999983589972687499999999999999898339899899999948989


Q ss_pred             HHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCEEEEECCH--------HHHHHHHHHHCCCCCCCEEEEEECCCC
Q ss_conf             189999999964988985489999999999987128439996491--------459999986402646538999707788
Q 006530           87 RWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVALAVENP--------EFFNRIAETLCSKAAMRFIILLWGKKS  158 (641)
Q Consensus        87 e~iv~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (641)
                      +++++++||+++|++++|+++.++.+++.+++++++++.++++..        .....+.+.......++..........
T Consensus       128 e~~~~~lA~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (640)
T d1ry2a_         128 EAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNN  207 (640)
T ss_dssp             HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCC
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             99999987501862860677889999999999755123321210011002014567777766543024210000013554


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH-
Q ss_conf             8888755787732288999952631102689701100134578898987999937999997035776289999999997-
Q 006530          159 SVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL-  237 (641)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~~~~~~~~~-  237 (641)
                      ......  ......+.......  ..           ........++++++|+|||||||.||||+++|++++...... 
T Consensus       208 ~~~~~~--~~~~~~~~~~~~~~--~~-----------~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~  272 (640)
T d1ry2a_         208 PSVAFH--APRDLDWATEKKKY--KT-----------YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTM  272 (640)
T ss_dssp             SSCCCC--SSSEEEHHHHHTTS--CS-----------CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHH
T ss_pred             CCCCCC--CCCCCCCCCCCCCC--CC-----------CCCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCHHHHHHHHH
T ss_conf             333334--54211000013344--32-----------2235776545577899799888999612345654778888888


Q ss_pred             HHHCCCCCCCEEEEECCHHHHHHHHH-HHHHHHCCEEEEEC-------CHHHHHHHHHHHCCEEEEECCHHHHHHHHHHH
Q ss_conf             65469999978999789145899988-58654237058752-------53779999966378299717078999999999
Q 006530          238 YDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQ  309 (641)
Q Consensus       238 ~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~v~~-------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  309 (641)
                      ...+.+.++|++++++|++|++++.. .+.++..|+++++.       ++..+++.++++++|++..+|+++..+.+...
T Consensus       273 ~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~  352 (640)
T d1ry2a_         273 RYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGD  352 (640)
T ss_dssp             HHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCT
T ss_pred             HHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEECCHHHHHHHHHCCC
T ss_conf             76328983430000156033546899999999719889995588777999999999997086289717289999985641


Q ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98741227999999999987687888876730620234778960479999889999887432246788889999998864
Q 006530          310 KQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSA  389 (641)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (641)
                      ...                                                                         -..+
T Consensus       353 ~~~-------------------------------------------------------------------------~~~~  359 (640)
T d1ry2a_         353 SYI-------------------------------------------------------------------------ENHS  359 (640)
T ss_dssp             TSS-------------------------------------------------------------------------SSCC
T ss_pred             CCC-------------------------------------------------------------------------CCCC
T ss_conf             112-------------------------------------------------------------------------3378


Q ss_pred             CCCCEEEEEECCCCCHHH-HHHHHHCC---CEEEECCCCCCCCCEEEECCCC---CCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf             098216996037899559-99999809---9046514655556702204899---9764532467689079996389986
Q 006530          390 IGISKAGVSGGGSLPMHI-DLFYEAIG---VKVQVGYGLTESSPVIAARRPT---CNVLGSVGHPINHTEIKIVDAETNE  462 (641)
Q Consensus       390 l~~~r~i~~gg~~l~~~l-~~~~~~~g---~~i~~~yG~tE~~~~~~~~~~~---~~~~~~~G~p~~~~~i~i~d~~~~~  462 (641)
                      ++++|.++++|+++++.+ +.+.+.+|   ..+++.||+||++.........   ..+++++|.|++|++++|+|++++.
T Consensus       360 l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~  439 (640)
T d1ry2a_         360 LKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGE  439 (640)
T ss_dssp             CTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTT
T ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
T ss_conf             87358999943457689999999860887641785200222454222356777677777644325578658998379985


Q ss_pred             CC-CCCCCCEEEEEC--CCCCCCCCCCCHHHHHCC--CCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCEEEEC
Q ss_conf             57-899973499924--753333369911122005--9899633685367717888897434596699962145527808
Q 006530          463 VL-PAGSKGIVKVRG--SQVMQGYFKNPSATKQAL--DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLS  537 (641)
Q Consensus       463 ~~-~~g~~Gel~v~g--~~~~~gY~~~~~~~~~~~--~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~  537 (641)
                      .. +.+..|||++++  |+++.||+++++.+.+.|  +.+|||+|||+|++++          +|++++.||+||+|+. 
T Consensus       440 ~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~~TGDlg~~d~----------dG~l~i~GR~dd~Ik~-  508 (640)
T d1ry2a_         440 ELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDK----------DGYIWILGRVDDVVNV-  508 (640)
T ss_dssp             CEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECT----------TCCEEECSCTTSCBCS-
T ss_pred             CCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCEEECC----------CCCEEEEECCCCEEEE-
T ss_conf             25787724899997057875466146977878641368997677498204999----------9878998747788999-


Q ss_pred             CCEEECCHHHHHHHHCCCCCCEEEEEECCCC----CEEEEEECCHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHH
Q ss_conf             9601216776999724945134899935998----038999529789999998739987892002719999999999996
Q 006530          538 TGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRK  613 (641)
Q Consensus       538 ~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~  613 (641)
                      +|++|+|.+||++|.+||+|.+|+|+|.+++    .+.++|+++++.....+.+      +......+++.++++++|+.
T Consensus       509 ~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~~~~~~~~~~------~~~~~l~~~l~~~~~~~L~~  582 (640)
T d1ry2a_         509 SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATD------DELQDIKKHLVFTVRKDIGP  582 (640)
T ss_dssp             SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------------CCSHHHHHHHHHHHHTCT
T ss_pred             CCEEECHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCH------HHHHHHHHHHHHHHHHHCCC
T ss_conf             999998899999998499832799998887989848999999737887663315------78999999999999854888


Q ss_pred             HHCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf             722699741238980689987878003
Q 006530          614 WTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       614 ~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                      |+     +|+.|+++++.|.+.+||+-
T Consensus       583 ~~-----~P~~i~~v~~lP~T~sGKi~  604 (640)
T d1ry2a_         583 FA-----APKLIILVDDLPKTRSGKIM  604 (640)
T ss_dssp             TT-----SCSEEEECSCCCBCTTSCBC
T ss_pred             CC-----CCEEEEEECCCCCCCCCCCC
T ss_conf             77-----86099996988889985722

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=0  Score=525.52  Aligned_cols=497  Identities=21%  Similarity=0.271  Sum_probs=407.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf             23589878421000123543204698259974899999999999999973999999899980897018999999996498
Q 006530           21 RHGFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGA  100 (641)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~n~~e~iv~~lA~~~~G~  100 (641)
                      ...+.+.+++++++ |+.+++.+...+ +++||+||.+++.++|..|.++|+++||+|+++++|+++++++++||+++|+
T Consensus        20 ~~~l~~~~~~~~~~-P~~~a~~d~~~~-~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA~~~~G~   97 (541)
T d1lcia_          20 GEQLHKAMKRYALV-PGTIAFTDAHIE-VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGV   97 (541)
T ss_dssp             HHHHHHHHHHHHTS-TTCEEEEETTTC-CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHCCC-CCEEEEEECCCC-EEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCE
T ss_conf             99999999961779-984999928999-1852999999999999999975959979999990897999999999998590


Q ss_pred             EEEECCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             89854899999999999871284399964914599999864026465389997077888888755787732288999952
Q 006530          101 INVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLG  180 (641)
Q Consensus       101 ~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (641)
                      +++|+++.++.+++.++++.++++.+|+++ +..+.+.+.....+..+.+++.......        .....+.+.....
T Consensus        98 i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~  168 (541)
T d1lcia_          98 AVAPANDIYNERELLNSMNISQPTVVFVSK-KGLQKILNVQKKLPIIQKIIIMDSKTDY--------QGFQSMYTFVTSH  168 (541)
T ss_dssp             EEEECCTTCCHHHHHHHHHHHCCSEEEECG-GGHHHHHHHHHHCTTCCEEEETTCSSCB--------TTBEEHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCEEEEEEC-CCCCCCHHCCCCCCCCCEEEEECCCCCC--------CCCCHHHHHHHHH
T ss_conf             999549888999999999742660886421-3332210001232233203540577654--------3310145555531


Q ss_pred             HHHHCCCCCCCHHHCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCEEEEECCHHH
Q ss_conf             6311026897011001345788989879999379999970357762899999999976546---9999978999789145
Q 006530          181 RESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIV---PAENGDKFLSMLPPWH  257 (641)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~---~~~~~d~~l~~~pl~~  257 (641)
                      ........+      ..+.....++++++++|||||||.||+|.++|++++..........   ...+++++++++|++|
T Consensus       169 ~~~~~~~~~------~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  242 (541)
T d1lcia_         169 LPPGFNEYD------FVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHH  242 (541)
T ss_dssp             SCTTCCTTT------CCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTS
T ss_pred             CCCCCCCCC------CCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf             254332223------47644588776379974035543332211122116666566653022333443332222122222


Q ss_pred             HHHHHHHHHHHHCCEEEEEC---CHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf             89998858654237058752---537799999663782997170789999999999874122799999999998768788
Q 006530          258 VYERACGYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYT  334 (641)
Q Consensus       258 ~~~~~~~~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (641)
                      .++....+..+..++..+..   ........+..+++|.+..+|.++..+.......                       
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~-----------------------  299 (541)
T d1lcia_         243 GFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLID-----------------------  299 (541)
T ss_dssp             HHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGG-----------------------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-----------------------
T ss_conf             222222222222222222222222311677876520122335764211222344210-----------------------


Q ss_pred             HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHH-HHHHHH
Q ss_conf             8876730620234778960479999889999887432246788889999998864098216996037899559-999998
Q 006530          335 AFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEA  413 (641)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gg~~l~~~l-~~~~~~  413 (641)
                                                                          ...+..++.+.+||++++... ..+.+.
T Consensus       300 ----------------------------------------------------~~~~~~l~~v~~gG~~~~~~~~~~~~~~  327 (541)
T d1lcia_         300 ----------------------------------------------------KYDLSNLHEIASGGAPLSKEVGEAVAKR  327 (541)
T ss_dssp             ----------------------------------------------------GSCCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred             ----------------------------------------------------CCCCCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf             ----------------------------------------------------0135522178864553445432111124


Q ss_pred             CC-CEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHH
Q ss_conf             09-90465146555567022048999764532467689079996389986578999734999247533333699111220
Q 006530          414 IG-VKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ  492 (641)
Q Consensus       414 ~g-~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~i~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~  492 (641)
                      ++ ..+++.||+||++..++........++++|+|+|+++++|+|+|++.+++.|+.|||+++|++++.||++++..+..
T Consensus       328 ~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~svG~p~~~~~~~i~d~d~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~  407 (541)
T d1lcia_         328 FHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNA  407 (541)
T ss_dssp             TTCSCCBCEECCGGGSSCSEECCCC---CCCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTBHHHHHH
T ss_pred             CCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCEECCCHHHHHH
T ss_conf             67752663577652475388667556877763105589779999799995999998479999138637766789666221


Q ss_pred             CCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCEEEECCCEEECCHHHHHHHHCCCCCCEEEEEECCCC----
Q ss_conf             0598996336853677178888974345966999621455278089601216776999724945134899935998----
Q 006530          493 ALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----  568 (641)
Q Consensus       493 ~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----  568 (641)
                      .+..++||+|||+|++++          +|.+++.||++|+|++ +|++|+|.+||+.|.+||+|.+|+|++.+++    
T Consensus       408 ~~~~~~~~~TGDl~~~~~----------~G~~~~~GR~~d~i~~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~  476 (541)
T d1lcia_         408 LIDKDGWLHSGDIAYWDE----------DEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGE  476 (541)
T ss_dssp             HBCTTSCEEEEEEEEECT----------TCCEEEC-----CEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEE
T ss_pred             CCCCCCCCCCCCEEEECC----------CEEEEEEEEECCEEEE-CCEEECHHHHHHHHHHCCCCCEEEEEEEECCCCCE
T ss_conf             004775434799517868----------8179993213488999-99999899999999819980279999998799997


Q ss_pred             CEEEEEECCHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf             038999529789999998739987892002719999999999996722699741238980689987878003
Q 006530          569 RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       569 ~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                      .+.++|+++++                ...+.++++++++++|..+..    .++.|+++++.|.+.+||+-
T Consensus       477 ~~~a~v~~~~~----------------~~~~~~~l~~~~~~~l~~~~~----~p~~i~~v~~lP~t~~GKi~  528 (541)
T d1lcia_         477 LPAAVVVLEHG----------------KTMTEKEIVDYVASQVTTAKK----LRGGVVFVDEVPKGLTGKLD  528 (541)
T ss_dssp             EEEEEEEECTT----------------CCCCHHHHHHHHHHHSCGGGS----CTTEEEEESSCCC-----CC
T ss_pred             EEEEEEEECCC----------------CCCCHHHHHHHHHHHCCCCCC----CCCEEEEECCCCCCCCCCCC
T ss_conf             99999997899----------------999999999999875776456----97189994987869886754

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=0  Score=519.08  Aligned_cols=482  Identities=23%  Similarity=0.340  Sum_probs=395.5

Q ss_pred             HHHHHHHHHHHHHHHHHHCC-CCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEE
Q ss_conf             89878421000123543204-69825997489999999999999997399999989998089701899999999649889
Q 006530           24 FRVFTRNCVDAVATRIRISR-RNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN  102 (641)
Q Consensus        24 ~~~~~~~~~~~~~~~~a~~~-~~~~~~~~Ty~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~n~~e~iv~~lA~~~~G~~~  102 (641)
                      +.+++++.+.++|+++|+.+ .+++++++||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        13 l~~~l~~~a~~~pd~~av~~~~~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~   92 (534)
T d1v25a_          13 LWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVL   92 (534)
T ss_dssp             THHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCEE
T ss_conf             99999999997599729999069936897299999999999999997796887999999089899999999999849299


Q ss_pred             EECCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             85489999999999987128439996491459999986402646538999707788888875578773228899995263
Q 006530          103 VVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRE  182 (641)
Q Consensus       103 v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (641)
                      +++++.++.+++.++++.++++.++++. ...............++..+........         ....... .    .
T Consensus        93 vpl~~~~~~~~l~~~l~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-~----~  157 (534)
T d1v25a_          93 HTANPRLSPKEIAYILNHAEDKVLLFDP-NLLPLVEAIRGELKTVQHFVVMDEKAPE---------GYLAYEE-A----L  157 (534)
T ss_dssp             EECCTTSCHHHHHHHHHHHTCSEEEECG-GGHHHHHHHGGGCSSCCEEEESSSCCCT---------TCEEHHH-H----C
T ss_pred             EECCCCCCHHHHHHHHHHHCCCCCCCCC-HHHHHHHHHHHCCCCCCEEEEEECCCCC---------CCCCCCC-C----C
T ss_conf             9509999999999999741033323552-0112477775025654225775035310---------0000011-2----3


Q ss_pred             HHCCCCCCCHHHCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH--HHCCCCCCCEEEEECCHHHHHH
Q ss_conf             11026897011001345788989879999379999970357762899999999976--5469999978999789145899
Q 006530          183 SRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY--DIVPAENGDKFLSMLPPWHVYE  260 (641)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~--~~~~~~~~d~~l~~~pl~~~~~  260 (641)
                      ..           ........++++++++|||||||.||+|.++|++++.......  ........+++++.+|++|.++
T Consensus       158 ~~-----------~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~  226 (534)
T d1v25a_         158 GE-----------EADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNA  226 (534)
T ss_dssp             CS-----------CCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHH
T ss_pred             CC-----------CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCC
T ss_conf             44-----------5553343567717999743788886521022441665311000000235444663432364244143


Q ss_pred             HHHHHHHHHCCEEEEEC----CHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98858654237058752----53779999966378299717078999999999987412279999999999876878888
Q 006530          261 RACGYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAF  336 (641)
Q Consensus       261 ~~~~~~~l~~G~~~v~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (641)
                      +...+..+..|+.+++.    ++..+...+.++++|.+.++|.++..+.......                         
T Consensus       227 ~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~-------------------------  281 (534)
T d1v25a_         227 WCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLEST-------------------------  281 (534)
T ss_dssp             HTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHH-------------------------
T ss_pred             CCCCCEEEEECCEEEECCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHCCC-------------------------
T ss_conf             1000000120312562143333100000112124443346715666666542024-------------------------


Q ss_pred             HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf             76730620234778960479999889999887432246788889999998864098216996037899559999998099
Q 006530          337 KRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGV  416 (641)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gg~~l~~~l~~~~~~~g~  416 (641)
                                                                        ...++++|.+++||++++....++++.++.
T Consensus       282 --------------------------------------------------~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~  311 (534)
T d1v25a_         282 --------------------------------------------------GHRLKTLRRLVVGGSAAPRSLIARFERMGV  311 (534)
T ss_dssp             --------------------------------------------------TCCCSSCCEEEECSSCCCHHHHHHHHHTTC
T ss_pred             --------------------------------------------------CCCCCCEEEEEEECCCCCHHHHHHHHHHCC
T ss_conf             --------------------------------------------------455443149999468788789999998498


Q ss_pred             EEEECCCCCCCCCEEEECCCCC-----------CCCCCCCCCCCCCEEEEEECCCCCCCCC--CCCCEEEEECCCCCCCC
Q ss_conf             0465146555567022048999-----------7645324676890799963899865789--99734999247533333
Q 006530          417 KVQVGYGLTESSPVIAARRPTC-----------NVLGSVGHPINHTEIKIVDAETNEVLPA--GSKGIVKVRGSQVMQGY  483 (641)
Q Consensus       417 ~i~~~yG~tE~~~~~~~~~~~~-----------~~~~~~G~p~~~~~i~i~d~~~~~~~~~--g~~Gel~v~g~~~~~gY  483 (641)
                      ++++.||+||++..+.......           ..++++|+|++|++++|+|+ +++.++.  |+.|||+++|++++.||
T Consensus       312 ~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~-~~~~~~~~~~~~Gel~v~g~~v~~gY  390 (534)
T d1v25a_         312 EVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADE-EGRPVPKDGKALGEVQLKGPWITGGY  390 (534)
T ss_dssp             EEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECT-TSCBCCSSSCCCEEEEEESTTSBSSC
T ss_pred             EEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEECC-CCCCCCCCCCEEEEEEECCCCCCCEE
T ss_conf             23650365433561220346765556673113566664000137838999999-99997789980689997578646612


Q ss_pred             CCCCHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCEEEECCCEEECCHHHHHHHHCCCCCCEEEEE
Q ss_conf             69911122005989963368536771788889743459669996214552780896012167769997249451348999
Q 006530          484 FKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVI  563 (641)
Q Consensus       484 ~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~  563 (641)
                      +++++.+.+.|..+|||+|||+|++++          +|.+++.||++|+|+. +|++|+|.+||+.|.+||+|.||+|+
T Consensus       391 ~~~~~~t~~~~~~dg~~~TGDlg~~~~----------~G~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~V~~a~v~  459 (534)
T d1v25a_         391 YGNEEATRSALTPDGFFRTGDIAVWDE----------EGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVV  459 (534)
T ss_dssp             BTCHHHHHTTBCTTSCEEEEEEEEECT----------TCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEE
T ss_pred             CCCHHHHHHHCCCCCCCCCCCEEEECC----------CCCEEEECCCCCEEEE-CCEEECHHHHHHHHHHCCCCCEEEEE
T ss_conf             488255123053689875696648989----------9148991365647998-99999889999999819981469999


Q ss_pred             ECCCC----CEEEEEECCHHHHHHHHHHCCCCCCCHHHCCHHHHHH-HHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf             35998----0389995297899999987399878920027199999-999999967226997412389806899878780
Q 006530          564 GQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTIS-LLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLC  638 (641)
Q Consensus       564 g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~  638 (641)
                      |.+++    .+.|+|+++.+                 ....+++.+ .+++.|+.|+     +|+.|+++++.|.+.+||
T Consensus       460 ~~~~~~~~~~l~a~vv~~~~-----------------~~~~~~~~~~~~~~~l~~~~-----~P~~i~~~~~lP~t~~GK  517 (534)
T d1v25a_         460 AIPHPKWQERPLAVVVPRGE-----------------KPTPEELNEHLLKAGFAKWQ-----LPDAYVFAEEIPRTSAGK  517 (534)
T ss_dssp             EEECSSSSEEEEECC------------------------------------CCCTTT-----SCSBC-------------
T ss_pred             EEECCCCCEEEEEEEEECCC-----------------CCCHHHHHHHHHHHCCCCCC-----CCCEEEEECCCCCCCCCC
T ss_conf             99879999699999996899-----------------99989999999983699677-----863899979878798856


Q ss_pred             CC
Q ss_conf             03
Q 006530          639 LA  640 (641)
Q Consensus       639 l~  640 (641)
                      +-
T Consensus       518 i~  519 (534)
T d1v25a_         518 FL  519 (534)
T ss_dssp             -C
T ss_pred             CC
T ss_conf             42

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=0  Score=481.28  Aligned_cols=461  Identities=18%  Similarity=0.193  Sum_probs=380.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEE
Q ss_conf             58987842100012354320469825997489999999999999997399999989998089701899999999649889
Q 006530           23 GFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN  102 (641)
Q Consensus        23 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~n~~e~iv~~lA~~~~G~~~  102 (641)
                      .+.++.+++++++|+++|+++++   +++||+||.++++++|..|.++|+++||+|+++++|+++++++++||+++|+++
T Consensus        24 tl~~l~~~~a~~~Pd~~Al~~~~---~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~~~G~v~  100 (514)
T d1amua_          24 TIHQLFEEQVSKRPNNVAIVCEN---EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAY  100 (514)
T ss_dssp             CHHHHHHHHHHHCTTSEEEEETT---EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred             CHHHHHHHHHHHCCCCEEEEECC---EEECHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCEE
T ss_conf             69999999998489973999899---468199999999999999997496884999999389899999999999869699


Q ss_pred             EECCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             85489999999999987128439996491459999986402646538999707788888875578773228899995263
Q 006530          103 VVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRE  182 (641)
Q Consensus       103 v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (641)
                      +++++.++.+++.++++.+++++++++. .....+...    ...............                     ..
T Consensus       101 v~l~~~~~~~~l~~~l~~~~~~~li~~~-~~~~~~~~~----~~~~~~~~~~~~~~~---------------------~~  154 (514)
T d1amua_         101 VPIDIEYPKERIQYILDDSQARMLLTQK-HLVHLIHNI----QFNGQVEIFEEDTIK---------------------IR  154 (514)
T ss_dssp             EECCTTSCHHHHHHHHHHHTCSEEEECG-GGHHHHTTS----CCCSEEEECCCSTTT---------------------TS
T ss_pred             EEECCCCCHHHHHHHHHCCCCCEEEEEH-HHHHHHHHH----CCCCCCCCCCCCCCC---------------------CC
T ss_conf             9868889999999877434874999830-245555431----022222222221222---------------------24


Q ss_pred             HHCCCCCCCHHHCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHH
Q ss_conf             11026897011001345788989879999379999970357762899999999976546999997899978914589998
Q 006530          183 SRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERA  262 (641)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~  262 (641)
                      ..           .....+..++++++++|||||||.||++.+||.++..........+....++++++..|++|..++.
T Consensus       155 ~~-----------~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~  223 (514)
T d1amua_         155 EG-----------TNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVW  223 (514)
T ss_dssp             CC-----------SCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHH
T ss_pred             CC-----------CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCC
T ss_conf             56-----------6677899856616999736888775322222222222222222222222345442100023224432


Q ss_pred             HHHHHHHCCEEEEECC------HHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8586542370587525------3779999966378299717078999999999987412279999999999876878888
Q 006530          263 CGYFIFSRGIELMYTA------VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAF  336 (641)
Q Consensus       263 ~~~~~l~~G~~~v~~~------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (641)
                      ..+.++..|+++++..      .......+.....+.+..+|..+....                               
T Consensus       224 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------  272 (514)
T d1amua_         224 EMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLD-------------------------------  272 (514)
T ss_dssp             HHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSC-------------------------------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCC-------------------------------
T ss_conf             1001022111001234433330455556666531221111011011222-------------------------------


Q ss_pred             HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf             76730620234778960479999889999887432246788889999998864098216996037899559999998099
Q 006530          337 KRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGV  416 (641)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gg~~l~~~l~~~~~~~g~  416 (641)
                                                                        ..++.+++.++.+|+.+++.+...... +.
T Consensus       273 --------------------------------------------------~~~~~~l~~~~~~G~~~~~~~~~~~~~-~~  301 (514)
T d1amua_         273 --------------------------------------------------PERILSIQTLITAGSATSPSLVNKWKE-KV  301 (514)
T ss_dssp             --------------------------------------------------TTTCCSCSEEEEESSCCCHHHHHHHTT-TS
T ss_pred             --------------------------------------------------CCCCCCCCEEEEECCCCCHHHHHHHCC-CE
T ss_conf             --------------------------------------------------124554538998214589788543135-51


Q ss_pred             EEEECCCCCCCCCEEEECCCCC---CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHC
Q ss_conf             0465146555567022048999---7645324676890799963899865789997349992475333336991112200
Q 006530          417 KVQVGYGLTESSPVIAARRPTC---NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQA  493 (641)
Q Consensus       417 ~i~~~yG~tE~~~~~~~~~~~~---~~~~~~G~p~~~~~i~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~  493 (641)
                      .+++.||+||++..++......   ...++.+.+.++..+.+.| +++++++.|+.|||+++||+++.||++++..+.+.
T Consensus       302 ~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~  380 (514)
T d1amua_         302 TYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQK  380 (514)
T ss_dssp             EEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHH
T ss_pred             EEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEC-CCCEECCCCCEEEEEECCCCCCCCCCCCCCCCCEE
T ss_conf             69974125667335541135655557666666402333576511-46335699972599972585446420354455002


Q ss_pred             C------CCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCEEEECCCEEECCHHHHHHHHCCCCCCEEEEEECCC
Q ss_conf             5------9899633685367717888897434596699962145527808960121677699972494513489993599
Q 006530          494 L------DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ  567 (641)
Q Consensus       494 ~------~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~  567 (641)
                      |      +.++||+|||+|++++          +|++++.||++|+|++ +|++|+|.+||+.|.+||+|.+|+|++.++
T Consensus       381 ~~~~~~~~~~~~~~TGD~g~~d~----------~G~l~i~GR~~d~i~~-~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~  449 (514)
T d1amua_         381 FVDNPFVPGEKLYKTGDQARWLS----------DGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKD  449 (514)
T ss_dssp             EEECSSSTTSEEEEEEEEEEECT----------TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEC
T ss_pred             EEECCCCCCCCEEEECCEEEECC----------CCCEEEEECCCCEEEE-CCEEECHHHHHHHHHHCCCCCEEEEEEEEC
T ss_conf             67513568883689778789989----------9849999426687998-999999999999997199826899998887


Q ss_pred             C----CEEEEEECCHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf             8----038999529789999998739987892002719999999999996722699741238980689987878003
Q 006530          568 R----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       568 ~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                      +    .+.|+|++++                  +.+.++++++++++|+.|+     +|+.|+++++.|.+.+||+-
T Consensus       450 ~~~g~~~~a~v~~~~------------------~~~~~~l~~~~~~~l~~~~-----~p~~i~~v~~lP~t~~GKi~  503 (514)
T d1amua_         450 HQEQPYLCAYFVSEK------------------HIPLEQLRQFSSEELPTYM-----IPSYFIQLDKMPLTSNGKID  503 (514)
T ss_dssp             TTSCEEEEEEEEESS------------------CCCHHHHHHHHHHHSCGGG-----SCSEEEECSSCCBCTTSSBC
T ss_pred             CCCCEEEEEEEECCC------------------CCCHHHHHHHHHHHCCCCC-----CCEEEEEECCCCCCCCCCHH
T ss_conf             889879999998289------------------9999999999984387565-----86099996987879885740

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=0  Score=480.19  Aligned_cols=481  Identities=17%  Similarity=0.261  Sum_probs=389.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCE
Q ss_conf             35898784210001235432046982599748999999999999999739999998999808970189999999964988
Q 006530           22 HGFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAI  101 (641)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~n~~e~iv~~lA~~~~G~~  101 (641)
                      +.+.++.++++++.|+++|+++++   +++||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus        25 ~tl~~~l~~~a~~~pd~~Al~~~~---~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~i  101 (536)
T d1mdba_          25 ETFGDLLRDRAAKYGDRIAITCGN---THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGAL  101 (536)
T ss_dssp             CCHHHHHHHHHHHHTTSEEEEETT---EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred             CCHHHHHHHHHHHCCCCEEEEECC---EEECHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCE
T ss_conf             979999999998779975999899---76849999999999999999759688699999938979999999999985949


Q ss_pred             EEECCCCCCHHHHHHHHHHCCCEEEEECCHH----HHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             9854899999999999871284399964914----599999864026465389997077888888755787732288999
Q 006530          102 NVVRGSRSSSEELLHIYNHSESVALAVENPE----FFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEII  177 (641)
Q Consensus       102 ~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (641)
                      ++++++..+.+++.++++.++++.+++++..    ............+.+...+.......           ...++++.
T Consensus       102 ~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~  170 (536)
T d1mdba_         102 PVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEE-----------FLPLEDLH  170 (536)
T ss_dssp             EEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTT-----------SEEGGGCC
T ss_pred             EEECCCCCCHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC-----------CCCHHHCC
T ss_conf             9955987899999999974101367324200122222333221010023332023202223-----------45222203


Q ss_pred             HHHHHHHCCCCCCCHHHCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHH
Q ss_conf             95263110268970110013457889898799993799999703577628999999999765469999978999789145
Q 006530          178 DLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH  257 (641)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~  257 (641)
                            ..          ........++++++++|||||||.||+|.+||+++...+......+++.++|++++..|++|
T Consensus       171 ------~~----------~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~  234 (536)
T d1mdba_         171 ------TE----------PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAH  234 (536)
T ss_dssp             ------CC----------CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTS
T ss_pred             ------CC----------CCCCCCCCCCCHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             ------57----------76787667544677641246631100010122222222222222222344333222223332


Q ss_pred             HHHHHHHH--HHHHCCEEEEEC---CHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             89998858--654237058752---5377999996637829971707899999999998741227999999999987687
Q 006530          258 VYERACGY--FIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFA  332 (641)
Q Consensus       258 ~~~~~~~~--~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (641)
                      .+++...+  ..+..|.+++..   ++..+...+.+++++.+..+|..+..+.......                     
T Consensus       235 ~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------  293 (536)
T d1mdba_         235 NYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR---------------------  293 (536)
T ss_dssp             HHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC---------------------
T ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCC---------------------
T ss_conf             22200011223123554223568899899999976520233222211466654301333---------------------


Q ss_pred             HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHH-HHHH
Q ss_conf             888876730620234778960479999889999887432246788889999998864098216996037899559-9999
Q 006530          333 YTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFY  411 (641)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gg~~l~~~l-~~~~  411 (641)
                                                                            ...+++++.+++||++++..+ .++.
T Consensus       294 ------------------------------------------------------~~~~~~~~~~~~gG~~~~~~~~~~~~  319 (536)
T d1mdba_         294 ------------------------------------------------------RDDLSSLQVLQVGGAKFSAEAARRVK  319 (536)
T ss_dssp             ------------------------------------------------------CCCCTTCCEEEEESSCCCHHHHTTHH
T ss_pred             ------------------------------------------------------CCCCCCCEEEEEECCCCCCCCCCCHH
T ss_conf             ------------------------------------------------------22567550599841333444321012


Q ss_pred             HHCCCEEEECCCCCCCCCEEEECCC-CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHH
Q ss_conf             9809904651465555670220489-997645324676890799963899865789997349992475333336991112
Q 006530          412 EAIGVKVQVGYGLTESSPVIAARRP-TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSAT  490 (641)
Q Consensus       412 ~~~g~~i~~~yG~tE~~~~~~~~~~-~~~~~~~~G~p~~~~~i~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~  490 (641)
                      +.++......|+.+|.+........ .....+++|.|.++....++..++++.++.++.|||+++|+.++.||++++..+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~~Gel~v~g~~~~~gY~~~~~~~  399 (536)
T d1mdba_         320 AVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHN  399 (536)
T ss_dssp             HHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHH
T ss_pred             HCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf             12573221023433211233211211234567755677786247997698976034224314137886433200233233


Q ss_pred             HHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCEEEECCCEEECCHHHHHHHHCCCCCCEEEEEECCCC--
Q ss_conf             200598996336853677178888974345966999621455278089601216776999724945134899935998--
Q 006530          491 KQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR--  568 (641)
Q Consensus       491 ~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~--  568 (641)
                      ...+..++||+|||++++++          ||.+++.||++|+|++ +|++|+|.+||+.|.+||+|.+|+|+|.+++  
T Consensus       400 ~~~~~~~~~~~tGD~~~~~~----------dG~l~~~GR~~d~i~~-~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~  468 (536)
T d1mdba_         400 AASFTEDGFYRTGDIVRLTR----------DGYIVVEGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFL  468 (536)
T ss_dssp             HHHBCTTSCEEEEEEEEECT----------TSCEEEEEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTT
T ss_pred             CCCCCCCCCCCCCCCCCCCC----------CCCEECCCCCCEEEEE-CCEEECHHHHHHHHHHCCCCCEEEEEEEECCCC
T ss_conf             11223567533575211069----------9866647875508998-999998899999998399825799999886889


Q ss_pred             --CEEEEEECCHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf             --038999529789999998739987892002719999999999-996722699741238980689987878003
Q 006530          569 --RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  640 (641)
Q Consensus       569 --~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  640 (641)
                        .+.++|+++++                 ..+.++++++++++ |+.|+     .|+.|+++++.|.+.+||+.
T Consensus       469 g~~~~a~v~~~~~-----------------~~~~~~l~~~l~~~~l~~~~-----~P~~i~~v~~lP~t~~GKi~  521 (536)
T d1mdba_         469 GERSCVFIIPRDE-----------------APKAAELKAFLRERGLAAYK-----IPDRVEFVESFPQTGVGKVS  521 (536)
T ss_dssp             EEEEEEEEEESSS-----------------CCCHHHHHHHHHHTTCCGGG-----SCSEEEECSSCCBCTTSCBC
T ss_pred             CEEEEEEEEECCC-----------------CCCHHHHHHHHHHCCCCCCC-----CCCEEEEECCCCCCCCCCCC
T ss_conf             8599999997999-----------------99999999999736998675-----85589998987869886752

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=0  Score=445.59  Aligned_cols=479  Identities=19%  Similarity=0.260  Sum_probs=375.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCE
Q ss_conf             35898784210001235432046982599748999999999999999739999998999808970189999999964988
Q 006530           22 HGFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAI  101 (641)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~n~~e~iv~~lA~~~~G~~  101 (641)
                      +.+.+.+++++++.|+++|+.+.+.. +++||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus         2 ~ti~~~l~~~a~~~pd~~al~~~~~~-~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v   80 (503)
T d3cw9a1           2 QTVNEMLRRAATRAPDHCALAVPARG-LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAV   80 (503)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEEGGGT-EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCE
T ss_pred             CCHHHHHHHHHHHCCCCEEEEECCCC-CEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCE
T ss_conf             88899999999868997699989999-38719999999999999999769699799999938989999999999985959


Q ss_pred             EEECCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             98548999999999998712843999649145999998640264653899970778888887557877322889999526
Q 006530          102 NVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGR  181 (641)
Q Consensus       102 ~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (641)
                      ++++++.++.+++.++++.++++.++++.......  .........+ ++.                    +.++.....
T Consensus        81 ~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~~~-~i~--------------------~~~~~~~~~  137 (503)
T d3cw9a1          81 PALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD--AIFQSGSGAR-IIF--------------------LGDLVRDGE  137 (503)
T ss_dssp             EEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHH--HHHHTTCCCE-EEE--------------------HHHHEETTE
T ss_pred             EEEECCCCCHHHHHHHHHHCCCCEEEEECCHHHHH--HHHHHCCCCC-CCC--------------------CHHHHHHHC
T ss_conf             99758999999999999725875799513067777--8765314443-221--------------------000111100


Q ss_pred             HHHCCCCCCCHHHCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC--CCCCEEEEECCHHHHH
Q ss_conf             31102689701100134578898987999937999997035776289999999997654699--9997899978914589
Q 006530          182 ESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA--ENGDKFLSMLPPWHVY  259 (641)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~--~~~d~~l~~~pl~~~~  259 (641)
                      ....        ..........++++++++|||||||.||++.++|+++.+........+..  ...+.++..+|++|..
T Consensus       138 ~~~~--------~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  209 (503)
T d3cw9a1         138 PYSY--------GPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVV  209 (503)
T ss_dssp             ECCC--------SCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHH
T ss_pred             CCCC--------CCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             1224--------77544532111333443112244434344311221123332220232322222222223457642222


Q ss_pred             HHHHH-HHHHHCCEEEEEC---CHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99885-8654237058752---5377999996637829971707899999999998741227999999999987687888
Q 006530          260 ERACG-YFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTA  335 (641)
Q Consensus       260 ~~~~~-~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (641)
                      +.... +.+...++.++..   ++..+...+..++++.+..+|..+..+.........                      
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------  267 (503)
T d3cw9a1         210 GFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGS----------------------  267 (503)
T ss_dssp             HHHTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCT----------------------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCCCCC----------------------
T ss_conf             2232222221223432346656857754311110000011222222221244433343----------------------


Q ss_pred             HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHH-HHHHHHC
Q ss_conf             876730620234778960479999889999887432246788889999998864098216996037899559-9999980
Q 006530          336 FKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI  414 (641)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gg~~l~~~l-~~~~~~~  414 (641)
                                                                         ...++++|.+++||+++++.. ..+...+
T Consensus       268 ---------------------------------------------------~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~  296 (503)
T d3cw9a1         268 ---------------------------------------------------SLKLDSLRHVTFAGATMPDAVLETVHQHL  296 (503)
T ss_dssp             ---------------------------------------------------TCCCTTCCEEEECSSCCCHHHHHHHHHHC
T ss_pred             ---------------------------------------------------CCCCCCEEEEEECCCCCCCCCCCCCCCCC
T ss_conf             ---------------------------------------------------44665147997436544453222222222


Q ss_pred             CCEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEC-CCCCCCCCCCCHHHHHC
Q ss_conf             99046514655556702204899976453246768907999638998657899973499924-75333336991112200
Q 006530          415 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG-SQVMQGYFKNPSATKQA  493 (641)
Q Consensus       415 g~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~i~i~d~~~~~~~~~g~~Gel~v~g-~~~~~gY~~~~~~~~~~  493 (641)
                      +..+.+.||++|++..+.............+.+.+.....+ ..+.++.++.|+.|++.+.+ +....+|++++..+.+.
T Consensus       297 ~~~~~~~yg~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~  375 (503)
T d3cw9a1         297 PGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRI-GGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEK  375 (503)
T ss_dssp             CSEEEEEEEETTTEEEEEEESCSSSSEEBCCTTCCEEEECT-TSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHH
T ss_pred             CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEE-ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             21123544542112012101223444444335542125653-02468636898522001111222222235773434877


Q ss_pred             CCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCEEEECCCEEECCHHHHHHHHCCCCCCEEEEEECCCC----C
Q ss_conf             598996336853677178888974345966999621455278089601216776999724945134899935998----0
Q 006530          494 LDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----R  569 (641)
Q Consensus       494 ~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----~  569 (641)
                      | .+|||+|||+|++++          ||.+++.||++|+|++ +|++|+|.+||+.+.+||+|.+|+|+|.+++    .
T Consensus       376 ~-~~g~~~TgD~g~~~~----------dG~l~~~GR~~d~ik~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~  443 (503)
T d3cw9a1         376 L-QDGWYRTSDVAVWTP----------EGTVRILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQS  443 (503)
T ss_dssp             E-ETTEEEEEEEEEECT----------TSCEEEEEESSCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEE
T ss_pred             H-CCCCEECCCCCCCCC----------CCEEEECCCCCCEEEE-CCEEECHHHHHHHHHHCCCCCEEEEEEEECCCCCEE
T ss_conf             3-188511135453024----------8858857876786998-999998899999998199815799997887889818


Q ss_pred             EEEEEECCHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHH-HHHHHHHCCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf             389995297899999987399878920027199999999-9999672269974123898068998787800
Q 006530          570 PGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLY-GELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  639 (641)
Q Consensus       570 ~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l  639 (641)
                      +.++|+++.+                .+.+.++++++++ ++|+.|+     +|+.|+++++.|.+.+||+
T Consensus       444 ~~a~v~~~~~----------------~~~~~~~l~~~~~~~~l~~~~-----~P~~i~~v~~~P~t~~GKi  493 (503)
T d3cw9a1         444 VTACVVPRLG----------------ETLSADALDTFCRSSELADFK-----RPKRYFILDQLPKNALNKV  493 (503)
T ss_dssp             EEEEEEECTT----------------CCCCHHHHHHHHHHSSSCGGG-----SCSEEEECSCCCBCTTSCB
T ss_pred             EEEEEEECCC----------------CCCCHHHHHHHHHHCCCCCCC-----CCCEEEEECCCCCCCCCCC
T ss_conf             9999996789----------------999999999999866899777-----8338999898886988682

>d2ayia1 e.60.1.1 (A:3-408) Aminopeptidase T {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Thermophilic metalloprotease-like
superfamily: Thermophilic metalloprotease-like
family: Thermophilic metalloprotease (M29)
domain: Aminopeptidase T
species: Thermus thermophilus [TaxId: 274]

Probab=82.61  E-value=0.96  Score=19.34  Aligned_cols=51  Identities=8%  Similarity=-0.046  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHC--CCCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEECC
Q ss_conf             999999999999973--999999899980897--018999999996498898548
Q 006530           56 LEQEILDFAEGLRVI--GVKPEEKLSLFSDNS--CRWLVADQGMLATGAINVVRG  106 (641)
Q Consensus        56 l~~~~~~lA~~L~~~--Gi~~Gd~Vai~~~n~--~e~iv~~lA~~~~G~~~v~i~  106 (641)
                      +.++.+++|..|.+.  ++++|+.|.|.++..  +-...+.-++.++|+.+|.+.
T Consensus         2 ~~~~L~k~A~llV~~~l~vqkGe~VlI~a~~~~~~Lvral~e~A~~~GA~pv~v~   56 (406)
T d2ayia1           2 FKRNLEKLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTVI   56 (406)
T ss_dssp             CHHHHHHHHHHHHHTTTCCCTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             6799999999999971268999989997166569999999999998699738996