Citrus Sinensis ID: 006535

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-
MSSIEFLRSTIHNRFLYANSSYNLHGGSFCHSRCRVYYHNTYRFASHAILFPSVIISNSQQKLSLKRGLLYSNQNLREIKILASSKDGESSETSESDGQSQSQTQSPTSTDSPTSQRREKRNKSNGFWWSKGKKFKWQPIIQAQEIGVLLLQLGIVMFVMRLLRPGIPLPGSEPRTSTTFVSVPYSDFLSKINSNQVAKVEVDGVHIMFKLKNDGSIQESEVITNKFQESESLLKSVTPTKRIVYTTTRPSDIKTPYEKMLENQVEFGSPDKRSGGFLNSALIALFYVAVLAGLLHRFPVSFSQTAGQVGHRKTRGPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEVKDWRDSKSQCMSCVCHKALII
cccccccccccccccccccccccccccccccccccEEEcccccccccccccccEEEcccccHHHHHcccccccHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHcccEEEEEEEccEEEEEEEcccccccHHHHHcccccHHHHHccccccccEEEEEEccccccHHHHHHHHcccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEccccccHHHHHHHHHHHHHccccHHHHHccccccccEEEEcccccHHHHHHHHHHccccccEEEcccccEEEEcccccHHHHHHHHHHHHHcccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHccccccccEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccHHcHHHHHHHHHccccccccccccccccHHHHHcccHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHcc
cccHHcccccccccccccccHHHccccHHccccEEEEcccccccccccEEcccEEEEcccccEEcHcccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccEEEEEEEccEEEEEEEccccEEEEEEEcccccccHHHHccccccccEEEEEccccccHHHHHHHHHcccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHcccccccEEEHHHcccHHHHHHHHHHHHHHHccHHHHHHcccccccEEEEEcccccHHHHHHHHHHccccccEEEEEccHHHHHHHcccHHHHHHHHHHHHHcccEEEEEEEHHHcccccccccccccccHHHHHHHHHHHHccccccccEEEEEEEccccccccHHHccccccccEEEEcccccccHHHHHHHHHccccccccccccHHHHHcccccccHHHHHHHHHHHHHHHHHHcccEEcHHHHHHHHHHHHcccHccccEccHHHHHHHHHHHHccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHcc
MSSIEFLRSTIHNRFlyanssynlhggsfchsrcrvyyhntyrfashailfpsviisnsqQKLSLKRGLLYSNQNLREIKILAsskdgessetsesdgqsqsqtqsptstdsptsqrrekrnksngfwwskgkkfkwqpiiQAQEIGVLLLQLGIVMFVMRLlrpgiplpgseprtsttfvsvpysdflskinsnqvakveVDGVHIMFKLkndgsiqesEVITNKFQEsesllksvtptkrivytttrpsdiktpyEKMLENQvefgspdkrsggfLNSALIALFYVAVLAGLLhrfpvsfsqtagqvghrktrgpggakvseqgdtitfadvagVDEAKEELEEIVEFLRspdkyirlgarpprgvllvglpgtgkTLLAKAVageaevpfiscsaSEFVELYVGMGASRVRDLFARAkkeapsiifIDEIDAVAksrdgrfrivsnDEREQTLNQLLTemdgfdsnSAVIVLGatnrsdvldpalrrpgrfdrvvmvetpdkigrEAILKVHVSkkelplakdidlgdiasmttgftgADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVasllpgqprvevkdwrdsksqcmscvchkalii
MSSIEFLRSTIHNRFLYANSSYNLHGGSFCHSRCRVYYHNTYRFASHAILFPSVIISNSQQKLSLKRGLLYSNQNLREIKILAsskdgessetsesdgqsqsqtqsptstdsptsqrrekrnksngfwwskgkkfkWQPIIQAQEIGVLLLQLGIVMFVMRLLRPGIPLPGSEPRTSTTFVSVPYSDFLSKINSNQVAKVEVDGVHIMFKlkndgsiqeSEVITnkfqesesllksvtptkrivytttrpsdiktpyeKMLENQVEFGSPDKRSGGFLNSALIALFYVAVLAGLLHRFPVSfsqtagqvghrktrgpggakvseqgdtiTFADVAGVDEAKEELEEIVEflrspdkyirlgarpprgVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKkeapsiifideidavaksrdgrfrivsnderEQTLNQLLTEMDGFDSNSAVIVLGatnrsdvldpalrrpgrfdrvvmvetpdkigreailkvhvskkelplakdidlgDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGtavasllpgqPRVEvkdwrdsksqcmscvchkalii
MSSIEFLRSTIHNRFLYANSSYNLHGGSFCHSRCRVYYHNTYRFASHAILFPSVIISNSQQKLSLKRGLLYSNQNLREIKILAsskdgessetsesdgqsqsqtqsptstdsptsqRREKRNKSNgfwwskgkkfkwQPIIQAQEIGVLLLQLGIVMFVMRLLRPGIPLPGSEPRTSTTFVSVPYSDFLSKINSNQVAKVEVDGVHIMFKLKNDGSIQESEVITNKFQESESLLKSVTPTKRIVYTTTRPSDIKTPYEKMLENQVEFGSPDKRSGGFLNSALIALFYVAVLAGLLHRFPVSFSQTAGQVGHRKTRGPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGadlanlvneaallaGRLNKVVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEVKDWRDSKSQCMSCVCHKALII
****EFLRSTIHNRFLYANSSYNLHGGSFCHSRCRVYYHNTYRFASHAILFPSVIISNSQQKLSLKRGLLYSNQNLREIKI********************************************GFWWSKGKKFKWQPIIQAQEIGVLLLQLGIVMFVMRLLRPGIPLP******STTFVSVPYSDFLSKINSNQVAKVEVDGVHIMFKLKNDGSI*****I****************TKRIVYTT***************************GGFLNSALIALFYVAVLAGLLHRFPVSFSQT**********************TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIV********LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEVKDWRDSKSQCMSCVCHKALI*
******LRSTIHNRFLYANSSYNLHGGSFCHSRCRVYYHNTYRFASHAILFPSVIISNSQQKLSLKRGLL**********************************************************************IQAQEIGVLLLQLGIVMFVMRLLRPGIP****************YSDFLSKINSNQVAKVEVDGVHIMFKLKNDG********************SVTPTKRIVYTTTRPSDIKTPYEKMLENQVEFGSPDKRSGGFLNSALIALFYVAVLAGLLHR****************************GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRF*IVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIEKK*****GSEKAVVARHEAGHAVVGTAVASLLPGQPRVEVKDWRDSKSQCMSCVCHKALII
MSSIEFLRSTIHNRFLYANSSYNLHGGSFCHSRCRVYYHNTYRFASHAILFPSVIISNSQQKLSLKRGLLYSNQNLREIKILA****************************************SNGFWWSKGKKFKWQPIIQAQEIGVLLLQLGIVMFVMRLLRPGIPLPGSEPRTSTTFVSVPYSDFLSKINSNQVAKVEVDGVHIMFKLKNDGSIQESEVITNKFQESESLLKSVTPTKRIVYTTTRPSDIKTPYEKMLENQVEFGSPDKRSGGFLNSALIALFYVAVLAGLLHRFPVSFSQ*******************EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIEKK***************EAGHAVVGTAVASLLPGQPRVEVKDWRDSKSQCMSCVCHKALII
*SSIEFLRSTIHNRFLYANSSYNLHGGSFCHSRCRVYYHNTYRFASHAILFPSVIISNSQQKLSLKRGLLYSNQNLREIKILASS****************************************GFWWSKGKKFKWQPIIQAQEIGVLLLQLGIVMFVMRLLRPGIPLPGSEPRT*TTFVSVPYSDFLSKINSNQVAKVEVDGVHIMFKLKNDGSIQESEVITNKFQESESLLKSVTPTKRIVYTTTRPSDIKTPYEKMLENQVEFGSPDKRSGGFLNSALIALFYVAVLAGLLHRFPVSFSQ********************QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSR*******SNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEVKDWRDSKSQCMSCVCHKALII
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSSIEFLRSTIHNRFLYANSSYNLHGGSFCHSRCRVYYHNTYRFASHAILFPSVIISNSQQKLSLKRGLLYSNQNLREIKILASSKDGESSETSESDGQSQSQTQSPTSTDSPTSQRREKRNKSNGFWWSKGKKFKWQPIIQAQEIGVLLLQLGIVMFVMRLLRPGIPLPGSEPRTSTTFVSVPYSDFLSKINSNQVAKVEVDGVHIMFKLKNDGSIQESEVITNKFQESESLLKSVTPTKRIVYTTTRPSDIKTPYEKMLENQVEFGSPDKRSGGFLNSALIALFYVAVLAGLLHRFPVSFSQTAGQVGHRKTRGPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEVKDWRDSKSQCMSCVCHKALII
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query641 2.2.26 [Sep-21-2011]
Q9SD67 802 ATP-dependent zinc metall yes no 0.929 0.743 0.716 0.0
Q9FIM2 806 ATP-dependent zinc metall no no 0.943 0.750 0.709 0.0
Q6H6R9 822 ATP-dependent zinc metall yes no 0.787 0.614 0.754 0.0
P85190260 ATP-dependent zinc metall N/A no 0.366 0.903 0.936 1e-124
A8ZNZ4 655 ATP-dependent zinc metall yes no 0.638 0.624 0.501 1e-103
P73437 628 ATP-dependent zinc metall N/A no 0.694 0.708 0.467 2e-96
B2UE66 714 ATP-dependent zinc metall no no 0.634 0.570 0.482 9e-96
A0LN68 647 ATP-dependent zinc metall yes no 0.589 0.584 0.517 1e-95
Q2LUQ1 736 ATP-dependent zinc metall yes no 0.765 0.667 0.436 2e-95
B8J992 706 ATP-dependent zinc metall yes no 0.507 0.460 0.545 3e-95
>sp|Q9SD67|FTSH7_ARATH ATP-dependent zinc metalloprotease FTSH 7, chloroplastic OS=Arabidopsis thaliana GN=FTSH7 PE=2 SV=1 Back     alignment and function desciption
 Score =  877 bits (2265), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/632 (71%), Positives = 513/632 (81%), Gaps = 36/632 (5%)

Query: 2   SSIEFLRSTIH--------NRFLYANSSYNLHGGSFCHSRCRVYYHNTYRFASHAILFP- 52
           ++ EFL+  IH        N  LY+ +S       F + RCRVY  N  RF S++I  P 
Sbjct: 3   TTFEFLQPRIHGFATCCSSNSLLYSKAS------RFFNDRCRVYRQNPNRFVSNSITLPL 56

Query: 53  ---SVIISNSQQKLSLKRGLLYSNQNLREIKILASSKDGESSETSESDGQSQSQTQSPTS 109
               V +  + ++ +L  G       L    ++   +D ++  +SE +  SQS       
Sbjct: 57  QKKQVTVLRNHERFNLWDGFSRKKSRL----VVNCQEDDQNESSSEEEESSQS------- 105

Query: 110 TDSPTSQRREKRNKSNGFWWSKGKKFKWQPIIQAQEIGVLLLQLGIVMFVMRLLRPGIPL 169
             +P    R++  K +  WWSKGKK++WQPIIQAQ IGVLLLQL +VMFVMRLLRPGIPL
Sbjct: 106 --TPAKSERKREKKEDKVWWSKGKKWQWQPIIQAQGIGVLLLQLSVVMFVMRLLRPGIPL 163

Query: 170 PGSEPRTSTTFVSVPYSDFLSKINSNQVAKVEVDGVHIMFKLKNDGSIQESEVITNKF-Q 228
           PGSEPR  TTFVSVPYS+FLSK+NSNQV KVEVDGV ++FKL++DG  QESE  T++  Q
Sbjct: 164 PGSEPRIQTTFVSVPYSEFLSKVNSNQVQKVEVDGVQVLFKLRDDGKWQESE--TSRLSQ 221

Query: 229 ESESLLKSVTPTKRIVYTTTRPSDIKTPYEKMLENQVEFGSPDKRSGGFLNSALIALFYV 288
            SESLL++V PTKR+VY+TTRP DIKTPYEKML N VEFGSP+KRSGGF NSALIALFY+
Sbjct: 222 SSESLLRTVAPTKRVVYSTTRPGDIKTPYEKMLGNNVEFGSPEKRSGGFFNSALIALFYI 281

Query: 289 AVLAGLLHRFPVSFSQTA-GQVGHRKTRGPGGAKVSEQGDTITFADVAGVDEAKEELEEI 347
           AVLAGL+ RFPVSFS ++ GQ+  RK  GP G KVS  G+TITFADVAGVDEAKEELEEI
Sbjct: 282 AVLAGLI-RFPVSFSTSSTGQLRTRKAGGPDGGKVSGGGETITFADVAGVDEAKEELEEI 340

Query: 348 VEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVG 407
           VEFLR+P+KY+RLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVG
Sbjct: 341 VEFLRNPEKYVRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVG 400

Query: 408 MGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD 467
           MGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDG+FR+ SNDEREQTLNQLLTEMDGFD
Sbjct: 401 MGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGKFRMGSNDEREQTLNQLLTEMDGFD 460

Query: 468 SNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDI 527
           SNSAVIVLGATNR+DVLDPALRRPGRFDRVV VETPDKIGRE+IL+VHVSKKELPL  D+
Sbjct: 461 SNSAVIVLGATNRADVLDPALRRPGRFDRVVTVETPDKIGRESILRVHVSKKELPLGDDV 520

Query: 528 DLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIEKKTAKLK 587
           +LG IASMTTGFTGADLANLVNEAALLAGR NK  VEKIDFI AVERSIAGIEKK+A+LK
Sbjct: 521 NLGSIASMTTGFTGADLANLVNEAALLAGRKNKTNVEKIDFIQAVERSIAGIEKKSARLK 580

Query: 588 GSEKAVVARHEAGHAVVGTAVASLLPGQPRVE 619
           G+EKAVVARHEAGHAVVGTAVA+LL GQPRVE
Sbjct: 581 GNEKAVVARHEAGHAVVGTAVANLLTGQPRVE 612
Probable ATP-dependent zinc metallopeptidase.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: -
>sp|Q9FIM2|FTSH9_ARATH ATP-dependent zinc metalloprotease FTSH 9, chloroplastic OS=Arabidopsis thaliana GN=FTSH9 PE=2 SV=1 Back     alignment and function description
>sp|Q6H6R9|FTSH7_ORYSJ ATP-dependent zinc metalloprotease FTSH 7, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH7 PE=3 SV=1 Back     alignment and function description
>sp|P85190|FTSH_HELAN ATP-dependent zinc metalloprotease FTSH, chloroplastic (Fragment) OS=Helianthus annuus GN=FTSH PE=1 SV=1 Back     alignment and function description
>sp|A8ZNZ4|FTSH_ACAM1 ATP-dependent zinc metalloprotease FtsH OS=Acaryochloris marina (strain MBIC 11017) GN=ftsH PE=3 SV=1 Back     alignment and function description
>sp|P73437|FTSH4_SYNY3 ATP-dependent zinc metalloprotease FtsH 4 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=ftsH4 PE=2 SV=1 Back     alignment and function description
>sp|B2UE66|FTSH_RALPJ ATP-dependent zinc metalloprotease FtsH OS=Ralstonia pickettii (strain 12J) GN=ftsH PE=3 SV=1 Back     alignment and function description
>sp|A0LN68|FTSH_SYNFM ATP-dependent zinc metalloprotease FtsH OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=ftsH PE=3 SV=1 Back     alignment and function description
>sp|Q2LUQ1|FTSH_SYNAS ATP-dependent zinc metalloprotease FtsH OS=Syntrophus aciditrophicus (strain SB) GN=ftsH PE=3 SV=1 Back     alignment and function description
>sp|B8J992|FTSH_ANAD2 ATP-dependent zinc metalloprotease FtsH OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=ftsH PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query641
449465816 827 PREDICTED: ATP-dependent zinc metallopro 0.962 0.746 0.763 0.0
255569271 816 Cell division protein ftsH, putative [Ri 0.942 0.740 0.749 0.0
225434670 818 PREDICTED: ATP-dependent zinc metallopro 0.960 0.753 0.747 0.0
449515109 795 PREDICTED: LOW QUALITY PROTEIN: ATP-depe 0.925 0.745 0.757 0.0
224106305 792 predicted protein [Populus trichocarpa] 0.904 0.732 0.775 0.0
297796823 802 hypothetical protein ARALYDRAFT_496010 [ 0.942 0.753 0.720 0.0
356553056 795 PREDICTED: ATP-dependent zinc metallopro 0.828 0.667 0.815 0.0
18408352 802 cell division protease ftsH-7 [Arabidops 0.929 0.743 0.716 0.0
356498935 803 PREDICTED: ATP-dependent zinc metallopro 0.937 0.748 0.735 0.0
224059324 807 predicted protein [Populus trichocarpa] 0.893 0.710 0.764 0.0
>gi|449465816|ref|XP_004150623.1| PREDICTED: ATP-dependent zinc metalloprotease FTSH 9, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  923 bits (2385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/634 (76%), Positives = 548/634 (86%), Gaps = 17/634 (2%)

Query: 1   MSSIEFLRSTIHNRFLYANSSYNL---HGGSFCHSRCRVYYHNTYRFASHAILFPSVII- 56
           MSS+EFL   I  +F + +S+ NL   +G  F   + RVY+ N+ RF  + + FPSV + 
Sbjct: 1   MSSVEFLSPVIRTKF-HLDSNCNLRCWNGLGFFRCKSRVYHQNSNRFVPNLVPFPSVKLY 59

Query: 57  ----SNSQQKLSLKRGLLYSNQNLREIKILASSKD----GESSETSESD-GQSQSQTQSP 107
               S +  +L+L  GL   N   R +KI A+ +D    G S E SE+   ++Q  +++ 
Sbjct: 60  RLASSKNSDRLNLWGGL-AGNFGSRNVKICANGRDSDSTGGSGEKSEAKPNETQGVSKNT 118

Query: 108 TSTDSPTSQRREKRNKSNGFWWSKGKKFKWQPIIQAQEIGVLLLQLGIVMFVMRLLRPGI 167
           T++ S ++++REK+ K  G+WWSKG K++WQPI+QAQEIG+LLLQLGIV+FVMRLLRPGI
Sbjct: 119 TNSGSSSNRKREKQGKGGGWWWSKGGKWRWQPIVQAQEIGILLLQLGIVIFVMRLLRPGI 178

Query: 168 PLPGSEPRTSTTFVSVPYSDFLSKINSNQVAKVEVDGVHIMFKLKNDGSIQESEVIT-NK 226
           PLPGSEPRT TTFVSVPYSDFLSKINSN V KVEVDGVHIMFKLK++   QESE+I+ +K
Sbjct: 179 PLPGSEPRTPTTFVSVPYSDFLSKINSNNVQKVEVDGVHIMFKLKSEPGTQESEIISGSK 238

Query: 227 FQESESLLKSVTPTKRIVYTTTRPSDIKTPYEKMLENQVEFGSPDKRSGGFLNSALIALF 286
            QES+SL++SV PTKRIVYTTTRPSDIKTPY+KMLEN VEFGSPDKRS GFLNSALIALF
Sbjct: 239 LQESDSLIRSVNPTKRIVYTTTRPSDIKTPYDKMLENAVEFGSPDKRSNGFLNSALIALF 298

Query: 287 YVAVLAGLLHRFPVSFSQ-TAGQVGHRKTRGPGGAKVSEQGDTITFADVAGVDEAKEELE 345
           YVAVLAGLLHRFPV+FSQ TAGQ+ +RK+ G GGAKVSEQG++ITFADVAGVDEAKEELE
Sbjct: 299 YVAVLAGLLHRFPVTFSQHTAGQIRNRKSGGAGGAKVSEQGESITFADVAGVDEAKEELE 358

Query: 346 EIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405
           EIVEFLR+PD+YIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY
Sbjct: 359 EIVEFLRNPDRYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 418

Query: 406 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG 465
           VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDG+FRIVSNDEREQTLNQLLTEMDG
Sbjct: 419 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGKFRIVSNDEREQTLNQLLTEMDG 478

Query: 466 FDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAK 525
           FDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPD+ GRE+IL VHV+KKELPLA 
Sbjct: 479 FDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDRTGRESILNVHVTKKELPLAD 538

Query: 526 DIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIEKKTAK 585
           D++L DIASMTTGFTGADLANLVNEAALLAGR NK+VVE+ DFI AVERSIAGIEKKTAK
Sbjct: 539 DVNLSDIASMTTGFTGADLANLVNEAALLAGRQNKIVVERDDFIQAVERSIAGIEKKTAK 598

Query: 586 LKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVE 619
           L+GSEK VVARHE GHAVVGTAVA+LLPGQPRVE
Sbjct: 599 LQGSEKTVVARHEVGHAVVGTAVANLLPGQPRVE 632

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255569271|ref|XP_002525603.1| Cell division protein ftsH, putative [Ricinus communis] gi|223535039|gb|EEF36721.1| Cell division protein ftsH, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225434670|ref|XP_002279721.1| PREDICTED: ATP-dependent zinc metalloprotease FTSH 9, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449515109|ref|XP_004164592.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent zinc metalloprotease FTSH 9, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224106305|ref|XP_002314122.1| predicted protein [Populus trichocarpa] gi|222850530|gb|EEE88077.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297796823|ref|XP_002866296.1| hypothetical protein ARALYDRAFT_496010 [Arabidopsis lyrata subsp. lyrata] gi|297312131|gb|EFH42555.1| hypothetical protein ARALYDRAFT_496010 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356553056|ref|XP_003544874.1| PREDICTED: ATP-dependent zinc metalloprotease FTSH 9, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|18408352|ref|NP_566889.1| cell division protease ftsH-7 [Arabidopsis thaliana] gi|75337073|sp|Q9SD67.1|FTSH7_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 7, chloroplastic; Short=AtFTSH7; Flags: Precursor gi|6522587|emb|CAB61952.1| FtsH metalloprotease-like protein [Arabidopsis thaliana] gi|20466542|gb|AAM20588.1| FtsH metalloprotease-like protein [Arabidopsis thaliana] gi|23198320|gb|AAN15687.1| FtsH metalloprotease-like protein [Arabidopsis thaliana] gi|332644718|gb|AEE78239.1| cell division protease ftsH-7 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356498935|ref|XP_003518301.1| PREDICTED: ATP-dependent zinc metalloprotease FTSH 9, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|224059324|ref|XP_002299826.1| predicted protein [Populus trichocarpa] gi|222847084|gb|EEE84631.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query641
TAIR|locus:2154568 806 ftsh9 "FTSH protease 9" [Arabi 0.751 0.598 0.812 5.1e-212
TAIR|locus:2075581 802 ftsh7 "FTSH protease 7" [Arabi 0.748 0.598 0.819 2.6e-208
TIGR_CMR|GSU_1809 610 GSU_1809 "cell division protei 0.558 0.586 0.508 3.9e-87
UNIPROTKB|Q3AFJ8 619 ftsH "ATP-dependent zinc metal 0.600 0.621 0.482 2.4e-85
TIGR_CMR|CHY_0214 619 CHY_0214 "cell division protei 0.600 0.621 0.482 2.4e-85
UNIPROTKB|Q5LNU8 639 ftsH "ATP-dependent zinc metal 0.556 0.558 0.490 1.2e-83
TIGR_CMR|SPO_3105 639 SPO_3105 "ATP-dependent metall 0.556 0.558 0.490 1.2e-83
TAIR|locus:2157637 704 VAR1 "VARIEGATED 1" [Arabidops 0.613 0.558 0.472 2.2e-82
TIGR_CMR|NSE_0423 636 NSE_0423 "ATP-dependent metall 0.583 0.588 0.463 5.8e-82
TIGR_CMR|DET_0391 608 DET_0391 "ATP-dependent metall 0.589 0.621 0.468 4e-81
TAIR|locus:2154568 ftsh9 "FTSH protease 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1995 (707.3 bits), Expect = 5.1e-212, Sum P(2) = 5.1e-212
 Identities = 395/486 (81%), Positives = 439/486 (90%)

Query:   138 QPIIQAQEIGVLLLQLGIVMFVMRLLRPGIPLPGSEPRTSTTFVSVPYSDFLSKINSNQV 197
             +PIIQAQEIGV+LLQLGIVMFV+RLLRPGIPLPGSEPRT TTF+SVPYSDFLSK+N+++V
Sbjct:   131 KPIIQAQEIGVMLLQLGIVMFVVRLLRPGIPLPGSEPRTQTTFMSVPYSDFLSKVNNDEV 190

Query:   198 AKVEVDGVHIMFKLKNDGSIQESEVITN--KFQES-ESLLKSVTPTKRIVYTTTRPSDIK 254
              KVEVDG H++FKLK+DG++QESE  ++  K  ES E++L+SV PTKR+VY+TTRP DIK
Sbjct:   191 QKVEVDGFHVLFKLKDDGNLQESETSSSSIKLSESSETMLRSVAPTKRVVYSTTRPRDIK 250

Query:   255 TPYEKMLENQVEFGSPDKRSGGFLNSALIALFYVAVLAGLLHRFPVSFSQ-TAGQVGHRK 313
             TPYEKMLEN VEFGSPDKRSGGF NS LI LFY+AVLAGLLHRFPV+FSQ T GQ+  RK
Sbjct:   251 TPYEKMLENNVEFGSPDKRSGGFFNSGLIVLFYIAVLAGLLHRFPVNFSQSTTGQLRTRK 310

Query:   314 TRGPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGL 373
             + GPGG KVS  G+TITFADVAGVDEAKEELEEIVEFL++PD+Y+RLGARPPRGVLLVGL
Sbjct:   311 SGGPGGGKVSGDGETITFADVAGVDEAKEELEEIVEFLKNPDRYVRLGARPPRGVLLVGL 370

Query:   374 PGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEI 433
             PGTGKTLLAKAVAGE++VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEI
Sbjct:   371 PGTGKTLLAKAVAGESDVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEI 430

Query:   434 DAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGR 493
             DAVAKSRDG+FR+VSNDEREQTLNQLLTEMDGFDS+SAVIVLGATNR+DVLDPALRRPGR
Sbjct:   431 DAVAKSRDGKFRMVSNDEREQTLNQLLTEMDGFDSSSAVIVLGATNRADVLDPALRRPGR 490

Query:   494 FDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGXXXXXXXXXXXX 553
             FDRVV VE+PDK+GRE+ILKVHVSKKELPL  D++L  IASMTTGFTG            
Sbjct:   491 FDRVVTVESPDKVGRESILKVHVSKKELPLGDDVNLASIASMTTGFTGADLANLVNEAAL 550

Query:   554 XXGRLNKVVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLP 613
               GR +K+ V+KIDFIHAVERSIAGIEKKTA+LKGSEKAVVARHEAGHAVVGTAVASLL 
Sbjct:   551 LAGRKSKMTVDKIDFIHAVERSIAGIEKKTARLKGSEKAVVARHEAGHAVVGTAVASLLS 610

Query:   614 GQPRVE 619
             GQ RVE
Sbjct:   611 GQSRVE 616
GO:0000166 "nucleotide binding" evidence=IEA
GO:0004222 "metalloendopeptidase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0006508 "proteolysis" evidence=IEA
GO:0008237 "metallopeptidase activity" evidence=ISS
GO:0008270 "zinc ion binding" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016020 "membrane" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
GO:0016887 "ATPase activity" evidence=ISS
GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA
GO:0030163 "protein catabolic process" evidence=IEA
GO:0004176 "ATP-dependent peptidase activity" evidence=ISS
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA
TAIR|locus:2075581 ftsh7 "FTSH protease 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1809 GSU_1809 "cell division protein FtsH" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q3AFJ8 ftsH "ATP-dependent zinc metalloprotease FtsH" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0214 CHY_0214 "cell division protein FtsH" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|Q5LNU8 ftsH "ATP-dependent zinc metalloprotease FtsH" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3105 SPO_3105 "ATP-dependent metalloprotease FtsH" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TAIR|locus:2157637 VAR1 "VARIEGATED 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|NSE_0423 NSE_0423 "ATP-dependent metalloprotease FtsH" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0391 DET_0391 "ATP-dependent metalloprotease FtsH" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P85190FTSH_HELAN3, ., 4, ., 2, 4, ., -0.93610.36660.9038N/Ano
Q6H6R9FTSH7_ORYSJ3, ., 4, ., 2, 4, ., -0.75440.78780.6143yesno
A8ZNZ4FTSH_ACAM13, ., 4, ., 2, 4, ., -0.50110.63800.6244yesno
Q9SD67FTSH7_ARATH3, ., 4, ., 2, 4, ., -0.71670.92970.7431yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.240.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query641
TIGR01241 495 TIGR01241, FtsH_fam, ATP-dependent metalloprotease 1e-153
COG0465 596 COG0465, HflB, ATP-dependent Zn proteases [Posttra 1e-149
CHL00176 638 CHL00176, ftsH, cell division protein; Validated 1e-126
PRK10733 644 PRK10733, hflB, ATP-dependent metalloprotease; Rev 1e-109
PRK03992389 PRK03992, PRK03992, proteasome-activating nucleoti 2e-92
COG1222406 COG1222, RPT1, ATP-dependent 26S proteasome regula 4e-92
TIGR01242364 TIGR01242, 26Sp45, 26S proteasome subunit P45 fami 2e-78
COG0464494 COG0464, SpoVK, ATPases of the AAA+ class [Posttra 4e-74
TIGR01243733 TIGR01243, CDC48, AAA family ATPase, CDC48 subfami 3e-72
TIGR01243 733 TIGR01243, CDC48, AAA family ATPase, CDC48 subfami 6e-69
PTZ00454398 PTZ00454, PTZ00454, 26S protease regulatory subuni 2e-65
PTZ00361438 PTZ00361, PTZ00361, 26 proteosome regulatory subun 2e-59
COG1223368 COG1223, COG1223, Predicted ATPase (AAA+ superfami 3e-54
pfam00004131 pfam00004, AAA, ATPase family associated with vari 3e-51
TIGR03689512 TIGR03689, pup_AAA, proteasome ATPase 4e-40
COG0464 494 COG0464, SpoVK, ATPases of the AAA+ class [Posttra 9e-36
cd00009151 cd00009, AAA, The AAA+ (ATPases Associated with a 2e-25
CHL00195489 CHL00195, ycf46, Ycf46; Provisional 5e-20
smart00382148 smart00382, AAA, ATPases associated with a variety 9e-19
PRK04195 482 PRK04195, PRK04195, replication factor C large sub 5e-12
COG0714329 COG0714, COG0714, MoxR-like ATPases [General funct 8e-10
COG2256 436 COG2256, MGS1, ATPase related to the helicase subu 3e-08
TIGR00382413 TIGR00382, clpX, endopeptidase Clp ATP-binding reg 1e-07
PRK13342 413 PRK13342, PRK13342, recombination factor protein R 1e-07
pfam07728135 pfam07728, AAA_5, AAA domain (dynein-related subfa 1e-07
pfam01434 212 pfam01434, Peptidase_M41, Peptidase family M41 2e-07
TIGR03922557 TIGR03922, T7SS_EccA, type VII secretion AAA-ATPas 2e-06
COG1224 450 COG1224, TIP49, DNA helicase TIP49, TBP-interactin 2e-06
COG1219408 COG1219, ClpX, ATP-dependent protease Clp, ATPase 3e-06
PRK05342412 PRK05342, clpX, ATP-dependent protease ATP-binding 3e-06
CHL00206 2281 CHL00206, ycf2, Ycf2; Provisional 6e-06
TIGR02928365 TIGR02928, TIGR02928, orc1/cdc6 family replication 3e-05
pfam06068395 pfam06068, TIP49, TIP49 C-terminus 7e-05
pfam13191154 pfam13191, AAA_16, AAA ATPase domain 1e-04
pfam07724168 pfam07724, AAA_2, AAA domain (Cdc48 subfamily) 1e-04
pfam06480103 pfam06480, FtsH_ext, FtsH Extracellular 2e-04
PRK08154309 PRK08154, PRK08154, anaerobic benzoate catabolism 3e-04
pfam13401124 pfam13401, AAA_22, AAA domain 4e-04
TIGR00390 441 TIGR00390, hslU, ATP-dependent protease HslVU, ATP 4e-04
TIGR02881261 TIGR02881, spore_V_K, stage V sporulation protein 0.001
COG2255332 COG2255, RuvB, Holliday junction resolvasome, heli 0.002
COG1373 398 COG1373, COG1373, Predicted ATPase (AAA+ superfami 0.003
COG1220 444 COG1220, HslU, ATP-dependent protease HslVU (ClpYQ 0.003
COG1474366 COG1474, CDC6, Cdc6-related protein, AAA superfami 0.004
>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH Back     alignment and domain information 
 Score =  452 bits (1164), Expect = e-153
 Identities = 188/307 (61%), Positives = 224/307 (72%), Gaps = 13/307 (4%)

Query: 312 RKTRGPGG---------AKVSEQGDT-ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG 361
           R+ +G GG         AK+  +    +TF DVAG+DEAKEEL EIV+FL++P K+ +LG
Sbjct: 25  RQMQGGGGRAFSFGKSKAKLLNEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG 84

Query: 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAK 421
           A+ P+GVLLVG PGTGKTLLAKAVAGEA VPF S S S+FVE++VG+GASRVRDLF +AK
Sbjct: 85  AKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAK 144

Query: 422 KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481
           K AP IIFIDEIDAV + R G      NDEREQTLNQLL EMDGF +N+ VIV+ ATNR 
Sbjct: 145 KNAPCIIFIDEIDAVGRQR-GAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRP 203

Query: 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541
           DVLDPAL RPGRFDR V+V+ PD  GRE ILKVH   K   LA D+DL  +A  T GF+G
Sbjct: 204 DVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNK--KLAPDVDLKAVARRTPGFSG 261

Query: 542 ADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGH 601
           ADLANL+NEAALLA R NK  +   D   A++R IAG EKK+  +   EK +VA HEAGH
Sbjct: 262 ADLANLLNEAALLAARKNKTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAGH 321

Query: 602 AVVGTAV 608
           A+VG  +
Sbjct: 322 ALVGLLL 328

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 495
>gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated Back     alignment and domain information
>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed Back     alignment and domain information
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family Back     alignment and domain information
>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like protein; Provisional Back     alignment and domain information
>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like protein; Provisional Back     alignment and domain information
>gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA) Back     alignment and domain information
>gnl|CDD|200312 TIGR03689, pup_AAA, proteasome ATPase Back     alignment and domain information
>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>gnl|CDD|177094 CHL00195, ycf46, Ycf46; Provisional Back     alignment and domain information
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities Back     alignment and domain information
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional Back     alignment and domain information
>gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction only] Back     alignment and domain information
>gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|232949 TIGR00382, clpX, endopeptidase Clp ATP-binding regulatory subunit (clpX) Back     alignment and domain information
>gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed Back     alignment and domain information
>gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily) Back     alignment and domain information
>gnl|CDD|216502 pfam01434, Peptidase_M41, Peptidase family M41 Back     alignment and domain information
>gnl|CDD|188437 TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA Back     alignment and domain information
>gnl|CDD|224145 COG1224, TIP49, DNA helicase TIP49, TBP-interacting protein [Transcription] Back     alignment and domain information
>gnl|CDD|224140 COG1219, ClpX, ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|235422 PRK05342, clpX, ATP-dependent protease ATP-binding subunit ClpX; Provisional Back     alignment and domain information
>gnl|CDD|214396 CHL00206, ycf2, Ycf2; Provisional Back     alignment and domain information
>gnl|CDD|234063 TIGR02928, TIGR02928, orc1/cdc6 family replication initiation protein Back     alignment and domain information
>gnl|CDD|147949 pfam06068, TIP49, TIP49 C-terminus Back     alignment and domain information
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain Back     alignment and domain information
>gnl|CDD|219536 pfam07724, AAA_2, AAA domain (Cdc48 subfamily) Back     alignment and domain information
>gnl|CDD|219052 pfam06480, FtsH_ext, FtsH Extracellular Back     alignment and domain information
>gnl|CDD|236167 PRK08154, PRK08154, anaerobic benzoate catabolism transcriptional regulator; Reviewed Back     alignment and domain information
>gnl|CDD|222104 pfam13401, AAA_22, AAA domain Back     alignment and domain information
>gnl|CDD|213527 TIGR00390, hslU, ATP-dependent protease HslVU, ATPase subunit Back     alignment and domain information
>gnl|CDD|163057 TIGR02881, spore_V_K, stage V sporulation protein K Back     alignment and domain information
>gnl|CDD|225164 COG2255, RuvB, Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224292 COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>gnl|CDD|224141 COG1220, HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|224391 COG1474, CDC6, Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 641
COG0465 596 HflB ATP-dependent Zn proteases [Posttranslational 100.0
KOG0731 774 consensus AAA+-type ATPase containing the peptidas 100.0
KOG0734 752 consensus AAA+-type ATPase containing the peptidas 100.0
CHL00176 638 ftsH cell division protein; Validated 100.0
COG1222406 RPT1 ATP-dependent 26S proteasome regulatory subun 100.0
KOG0730693 consensus AAA+-type ATPase [Posttranslational modi 100.0
PRK10733 644 hflB ATP-dependent metalloprotease; Reviewed 100.0
KOG0733802 consensus Nuclear AAA ATPase (VCP subfamily) [Post 100.0
TIGR01241 495 FtsH_fam ATP-dependent metalloprotease FtsH. HflB( 100.0
CHL00206 2281 ycf2 Ycf2; Provisional 100.0
KOG0729435 consensus 26S proteasome regulatory complex, ATPas 100.0
KOG0727408 consensus 26S proteasome regulatory complex, ATPas 100.0
KOG0736953 consensus Peroxisome assembly factor 2 containing 100.0
KOG0733 802 consensus Nuclear AAA ATPase (VCP subfamily) [Post 100.0
KOG0728404 consensus 26S proteasome regulatory complex, ATPas 100.0
KOG0652424 consensus 26S proteasome regulatory complex, ATPas 100.0
COG1223368 Predicted ATPase (AAA+ superfamily) [General funct 100.0
KOG0726440 consensus 26S proteasome regulatory complex, ATPas 100.0
KOG0738491 consensus AAA+-type ATPase [Posttranslational modi 100.0
PTZ00454398 26S protease regulatory subunit 6B-like protein; P 100.0
TIGR01243733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 100.0
PRK03992389 proteasome-activating nucleotidase; Provisional 100.0
KOG0735952 consensus AAA+-type ATPase [Posttranslational modi 100.0
COG0464494 SpoVK ATPases of the AAA+ class [Posttranslational 100.0
PTZ00361438 26 proteosome regulatory subunit 4-like protein; P 100.0
CHL00195489 ycf46 Ycf46; Provisional 100.0
KOG0739439 consensus AAA+-type ATPase [Posttranslational modi 100.0
TIGR01242364 26Sp45 26S proteasome subunit P45 family. Many pro 100.0
KOG0737386 consensus AAA+-type ATPase [Posttranslational modi 100.0
KOG0651388 consensus 26S proteasome regulatory complex, ATPas 100.0
TIGR03689512 pup_AAA proteasome ATPase. In the Actinobacteria, 100.0
KOG0741 744 consensus AAA+-type ATPase [Posttranslational modi 100.0
KOG0732 1080 consensus AAA+-type ATPase containing the bromodom 100.0
KOG0730 693 consensus AAA+-type ATPase [Posttranslational modi 100.0
TIGR01243 733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 100.0
PLN00020413 ribulose bisphosphate carboxylase/oxygenase activa 100.0
KOG0740428 consensus AAA+-type ATPase [Posttranslational modi 99.97
CHL00181287 cbbX CbbX; Provisional 99.89
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 99.89
KOG0742630 consensus AAA+-type ATPase [Posttranslational modi 99.89
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 99.88
PF00004132 AAA: ATPase family associated with various cellula 99.87
KOG0743457 consensus AAA+-type ATPase [Posttranslational modi 99.87
TIGR00635305 ruvB Holliday junction DNA helicase, RuvB subunit. 99.83
PRK00080328 ruvB Holliday junction DNA helicase RuvB; Reviewed 99.83
PF05496233 RuvB_N: Holliday junction DNA helicase ruvB N-term 99.82
KOG0744423 consensus AAA+-type ATPase [Posttranslational modi 99.81
COG2256 436 MGS1 ATPase related to the helicase subunit of the 99.8
KOG0735 952 consensus AAA+-type ATPase [Posttranslational modi 99.8
KOG0736 953 consensus Peroxisome assembly factor 2 containing 99.79
TIGR02639 731 ClpA ATP-dependent Clp protease ATP-binding subuni 99.78
COG0464 494 SpoVK ATPases of the AAA+ class [Posttranslational 99.77
COG2255332 RuvB Holliday junction resolvasome, helicase subun 99.77
TIGR02902 531 spore_lonB ATP-dependent protease LonB. Members of 99.76
TIGR00763 775 lon ATP-dependent protease La. This protein is ind 99.75
PRK00149450 dnaA chromosomal replication initiation protein; R 99.75
PRK14962 472 DNA polymerase III subunits gamma and tau; Provisi 99.74
TIGR00362405 DnaA chromosomal replication initiator protein Dna 99.73
PRK14956 484 DNA polymerase III subunits gamma and tau; Provisi 99.73
PRK11034 758 clpA ATP-dependent Clp protease ATP-binding subuni 99.72
PRK13342 413 recombination factor protein RarA; Reviewed 99.71
PRK04195 482 replication factor C large subunit; Provisional 99.71
TIGR02928365 orc1/cdc6 family replication initiation protein. M 99.71
PRK14088440 dnaA chromosomal replication initiation protein; P 99.71
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 99.71
PRK06645 507 DNA polymerase III subunits gamma and tau; Validat 99.7
PRK00411394 cdc6 cell division control protein 6; Reviewed 99.7
PRK14960 702 DNA polymerase III subunits gamma and tau; Provisi 99.69
PRK06893229 DNA replication initiation factor; Validated 99.69
PRK12323 700 DNA polymerase III subunits gamma and tau; Provisi 99.69
PRK07003 830 DNA polymerase III subunits gamma and tau; Validat 99.69
PRK14958 509 DNA polymerase III subunits gamma and tau; Provisi 99.68
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 99.68
PRK14086617 dnaA chromosomal replication initiation protein; P 99.68
CHL00095 821 clpC Clp protease ATP binding subunit 99.67
PRK13341 725 recombination factor protein RarA/unknown domain f 99.67
PRK12422445 chromosomal replication initiation protein; Provis 99.67
PRK14964 491 DNA polymerase III subunits gamma and tau; Provisi 99.67
TIGR03345 852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 99.66
PRK12402337 replication factor C small subunit 2; Reviewed 99.66
PRK14963 504 DNA polymerase III subunits gamma and tau; Provisi 99.66
PRK14949 944 DNA polymerase III subunits gamma and tau; Provisi 99.66
PRK07994 647 DNA polymerase III subunits gamma and tau; Validat 99.66
PRK08903227 DnaA regulatory inactivator Hda; Validated 99.66
PLN03025319 replication factor C subunit; Provisional 99.65
PRK08691 709 DNA polymerase III subunits gamma and tau; Validat 99.65
TIGR02397355 dnaX_nterm DNA polymerase III, subunit gamma and t 99.65
PRK05563 559 DNA polymerase III subunits gamma and tau; Validat 99.65
PRK14951 618 DNA polymerase III subunits gamma and tau; Provisi 99.64
PRK08084235 DNA replication initiation factor; Provisional 99.64
PHA02544316 44 clamp loader, small subunit; Provisional 99.63
KOG2028 554 consensus ATPase related to the helicase subunit o 99.62
PRK14970367 DNA polymerase III subunits gamma and tau; Provisi 99.62
PRK14969 527 DNA polymerase III subunits gamma and tau; Provisi 99.62
PTZ001121164 origin recognition complex 1 protein; Provisional 99.61
PRK14959 624 DNA polymerase III subunits gamma and tau; Provisi 99.61
PRK14952 584 DNA polymerase III subunits gamma and tau; Provisi 99.61
PRK14957 546 DNA polymerase III subunits gamma and tau; Provisi 99.61
COG0466 782 Lon ATP-dependent Lon protease, bacterial type [Po 99.61
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 99.6
PRK07133 725 DNA polymerase III subunits gamma and tau; Validat 99.6
PRK10865 857 protein disaggregation chaperone; Provisional 99.6
PRK14965 576 DNA polymerase III subunits gamma and tau; Provisi 99.6
PRK07764 824 DNA polymerase III subunits gamma and tau; Validat 99.6
PRK05896 605 DNA polymerase III subunits gamma and tau; Validat 99.6
PRK14087450 dnaA chromosomal replication initiation protein; P 99.6
TIGR03346 852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 99.59
PRK14953 486 DNA polymerase III subunits gamma and tau; Provisi 99.59
PRK08451 535 DNA polymerase III subunits gamma and tau; Validat 99.59
PRK14955397 DNA polymerase III subunits gamma and tau; Provisi 99.59
PRK08727233 hypothetical protein; Validated 99.59
PRK05642234 DNA replication initiation factor; Validated 99.59
PRK06647 563 DNA polymerase III subunits gamma and tau; Validat 99.58
PRK09111 598 DNA polymerase III subunits gamma and tau; Validat 99.58
PRK06305 451 DNA polymerase III subunits gamma and tau; Validat 99.58
PRK10787 784 DNA-binding ATP-dependent protease La; Provisional 99.57
KOG0989346 consensus Replication factor C, subunit RFC4 [Repl 99.57
PRK00440319 rfc replication factor C small subunit; Reviewed 99.57
KOG2004 906 consensus Mitochondrial ATP-dependent protease PIM 99.57
COG0593408 DnaA ATPase involved in DNA replication initiation 99.57
PRK06620214 hypothetical protein; Validated 99.57
COG1224450 TIP49 DNA helicase TIP49, TBP-interacting protein 99.56
PRK07940394 DNA polymerase III subunit delta'; Validated 99.56
PRK05342412 clpX ATP-dependent protease ATP-binding subunit Cl 99.56
PRK14954 620 DNA polymerase III subunits gamma and tau; Provisi 99.54
PRK14948 620 DNA polymerase III subunits gamma and tau; Provisi 99.54
PRK14950 585 DNA polymerase III subunits gamma and tau; Provisi 99.53
PRK13407334 bchI magnesium chelatase subunit I; Provisional 99.53
PF05673249 DUF815: Protein of unknown function (DUF815); Inte 99.52
TIGR02640262 gas_vesic_GvpN gas vesicle protein GvpN. Members o 99.51
TIGR02903 615 spore_lon_C ATP-dependent protease, Lon family. Me 99.51
COG2812 515 DnaX DNA polymerase III, gamma/tau subunits [DNA r 99.51
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 99.49
PRK05201443 hslU ATP-dependent protease ATP-binding subunit Hs 99.49
TIGR00382413 clpX endopeptidase Clp ATP-binding regulatory subu 99.48
TIGR00390441 hslU ATP-dependent protease HslVU, ATPase subunit. 99.48
PRK09087226 hypothetical protein; Validated 99.48
CHL00081350 chlI Mg-protoporyphyrin IX chelatase 99.48
TIGR02030337 BchI-ChlI magnesium chelatase ATPase subunit I. Th 99.47
PRK14971 614 DNA polymerase III subunits gamma and tau; Provisi 99.47
PRK11034758 clpA ATP-dependent Clp protease ATP-binding subuni 99.46
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 99.44
COG0542 786 clpA ATP-binding subunits of Clp protease and DnaK 99.42
TIGR02442 633 Cob-chelat-sub cobaltochelatase subunit. A number 99.4
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 99.38
PF06068398 TIP49: TIP49 C-terminus; InterPro: IPR010339 This 99.33
TIGR02329526 propionate_PrpR propionate catabolism operon regul 99.32
TIGR00368499 Mg chelatase-related protein. The N-terminal end m 99.32
PRK15424538 propionate catabolism operon regulatory protein Pr 99.32
KOG1942456 consensus DNA helicase, TBP-interacting protein [R 99.32
TIGR01650327 PD_CobS cobaltochelatase, CobS subunit. This model 99.3
COG3829560 RocR Transcriptional regulator containing PAS, AAA 99.3
COG0714329 MoxR-like ATPases [General function prediction onl 99.3
TIGR03345852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 99.29
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 99.29
TIGR00764 608 lon_rel lon-related putative ATP-dependent proteas 99.28
smart00350509 MCM minichromosome maintenance proteins. 99.27
TIGR01817534 nifA Nif-specific regulatory protein. This model r 99.27
PRK13531 498 regulatory ATPase RavA; Provisional 99.27
TIGR03346852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 99.27
PRK09112351 DNA polymerase III subunit delta'; Validated 99.26
COG2607287 Predicted ATPase (AAA+ superfamily) [General funct 99.26
PRK10865857 protein disaggregation chaperone; Provisional 99.25
PRK05022509 anaerobic nitric oxide reductase transcription reg 99.25
CHL00095821 clpC Clp protease ATP binding subunit 99.25
PRK10820520 DNA-binding transcriptional regulator TyrR; Provis 99.24
PRK07471365 DNA polymerase III subunit delta'; Validated 99.23
PRK11388638 DNA-binding transcriptional regulator DhaR; Provis 99.23
PRK11608326 pspF phage shock protein operon transcriptional ac 99.23
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 99.22
smart00382148 AAA ATPases associated with a variety of cellular 99.22
TIGR02974329 phageshock_pspF psp operon transcriptional activat 99.21
PF01078206 Mg_chelatase: Magnesium chelatase, subunit ChlI; I 99.21
PHA02244383 ATPase-like protein 99.21
COG0542786 clpA ATP-binding subunits of Clp protease and DnaK 99.21
PRK09862506 putative ATP-dependent protease; Provisional 99.19
COG1221403 PspF Transcriptional regulators containing an AAA- 99.19
COG0606490 Predicted ATPase with chaperone activity [Posttran 99.18
PRK05564313 DNA polymerase III subunit delta'; Validated 99.18
PRK15429686 formate hydrogenlyase transcriptional activator Fh 99.17
TIGR00602 637 rad24 checkpoint protein rad24. This family is bas 99.14
COG3604550 FhlA Transcriptional regulator containing GAF, AAA 99.14
COG2204464 AtoC Response regulator containing CheY-like recei 99.13
TIGR00678188 holB DNA polymerase III, delta' subunit. At positi 99.13
TIGR02031 589 BchD-ChlD magnesium chelatase ATPase subunit D. Th 99.13
PRK07399314 DNA polymerase III subunit delta'; Validated 99.11
PRK11331459 5-methylcytosine-specific restriction enzyme subun 99.1
PRK04132846 replication factor C small subunit; Provisional 99.1
PF07728139 AAA_5: AAA domain (dynein-related subfamily); Inte 99.08
KOG1969 877 consensus DNA replication checkpoint protein CHL12 99.08
COG0470325 HolB ATPase involved in DNA replication [DNA repli 99.07
TIGR02915445 PEP_resp_reg putative PEP-CTERM system response re 99.03
KOG2680454 consensus DNA helicase TIP49, TBP-interacting prot 99.03
PRK08058329 DNA polymerase III subunit delta'; Validated 99.01
COG1239423 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis 99.0
COG1219408 ClpX ATP-dependent protease Clp, ATPase subunit [P 98.99
PF00158168 Sigma54_activat: Sigma-54 interaction domain; Inte 98.99
KOG0741744 consensus AAA+-type ATPase [Posttranslational modi 98.98
COG1220444 HslU ATP-dependent protease HslVU (ClpYQ), ATPase 98.97
KOG0991333 consensus Replication factor C, subunit RFC2 [Repl 98.94
PRK11361457 acetoacetate metabolism regulatory protein AtoC; P 98.94
PRK05707328 DNA polymerase III subunit delta'; Validated 98.94
smart00763361 AAA_PrkA PrkA AAA domain. This is a family of PrkA 98.93
PRK10923469 glnG nitrogen regulation protein NR(I); Provisiona 98.93
PF07724171 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR 98.93
PTZ00111 915 DNA replication licensing factor MCM4; Provisional 98.91
PRK08116268 hypothetical protein; Validated 98.88
KOG1514767 consensus Origin recognition complex, subunit 1, a 98.86
PRK13765 637 ATP-dependent protease Lon; Provisional 98.85
PRK15115444 response regulator GlrR; Provisional 98.84
TIGR01818463 ntrC nitrogen regulation protein NR(I). This model 98.81
PF13177162 DNA_pol3_delta2: DNA polymerase III, delta subunit 98.78
KOG0990360 consensus Replication factor C, subunit RFC5 [Repl 98.78
PRK07952244 DNA replication protein DnaC; Validated 98.76
PRK13406 584 bchD magnesium chelatase subunit D; Provisional 98.75
KOG2227529 consensus Pre-initiation complex, subunit CDC6, AA 98.75
PRK06964342 DNA polymerase III subunit delta'; Validated 98.74
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 98.73
PF07726131 AAA_3: ATPase family associated with various cellu 98.73
PRK10365441 transcriptional regulatory protein ZraR; Provision 98.72
PRK06871325 DNA polymerase III subunit delta'; Validated 98.72
PF14532138 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 98.71
PRK12377248 putative replication protein; Provisional 98.7
PRK08939306 primosomal protein DnaI; Reviewed 98.67
KOG0745564 consensus Putative ATP-dependent Clp-type protease 98.65
PRK07993334 DNA polymerase III subunit delta'; Validated 98.64
PF01434 213 Peptidase_M41: Peptidase family M41 This is family 98.64
PRK08769319 DNA polymerase III subunit delta'; Validated 98.6
PRK08181269 transposase; Validated 98.6
PF03215 519 Rad17: Rad17 cell cycle checkpoint protein 98.56
PRK06526254 transposase; Provisional 98.54
COG3283511 TyrR Transcriptional regulator of aromatic amino a 98.54
KOG2035351 consensus Replication factor C, subunit RFC3 [Cell 98.54
PF13173128 AAA_14: AAA domain 98.52
PRK06835329 DNA replication protein DnaC; Validated 98.51
PRK06090319 DNA polymerase III subunit delta'; Validated 98.5
COG1484254 DnaC DNA replication protein [DNA replication, rec 98.48
KOG1051898 consensus Chaperone HSP104 and related ATP-depende 98.47
PRK09183259 transposase/IS protein; Provisional 98.46
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 98.45
PF01695178 IstB_IS21: IstB-like ATP binding protein; InterPro 98.44
PRK08699325 DNA polymerase III subunit delta'; Validated 98.41
PF12775272 AAA_7: P-loop containing dynein motor region D3; P 98.41
PRK06921266 hypothetical protein; Provisional 98.4
KOG0478804 consensus DNA replication licensing factor, MCM4 c 98.31
PF05729166 NACHT: NACHT domain 98.3
COG3284606 AcoR Transcriptional activator of acetoin/glycerol 98.29
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 98.27
KOG0480764 consensus DNA replication licensing factor, MCM6 c 98.26
COG1241682 MCM2 Predicted ATPase involved in replication cont 98.26
KOG1970 634 consensus Checkpoint RAD17-RFC complex, RAD17/RAD2 98.24
PF03969362 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 98.24
KOG0482721 consensus DNA replication licensing factor, MCM7 c 98.22
PLN03210 1153 Resistant to P. syringae 6; Provisional 98.21
PF00493331 MCM: MCM2/3/5 family This family extends the MCM d 98.15
COG3267269 ExeA Type II secretory pathway, component ExeA (pr 98.12
TIGR02237209 recomb_radB DNA repair and recombination protein R 98.07
PF00931287 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is 98.07
PF12774231 AAA_6: Hydrolytic ATP binding site of dynein motor 98.03
PRK05917290 DNA polymerase III subunit delta'; Validated 97.96
PRK05818261 DNA polymerase III subunit delta'; Validated 97.91
cd01124187 KaiC KaiC is a circadian clock protein primarily f 97.86
TIGR01618220 phage_P_loop phage nucleotide-binding protein. Thi 97.85
KOG0481729 consensus DNA replication licensing factor, MCM5 c 97.84
KOG1968 871 consensus Replication factor C, subunit RFC1 (larg 97.82
TIGR02688449 conserved hypothetical protein TIGR02688. Members 97.8
COG1485367 Predicted ATPase [General function prediction only 97.77
PRK07132299 DNA polymerase III subunit delta'; Validated 97.76
PF00910107 RNA_helicase: RNA helicase; InterPro: IPR000605 He 97.76
PRK00131175 aroK shikimate kinase; Reviewed 97.73
PRK07276290 DNA polymerase III subunit delta'; Validated 97.73
PRK11823446 DNA repair protein RadA; Provisional 97.72
PRK09361225 radB DNA repair and recombination protein RadB; Pr 97.71
TIGR02012321 tigrfam_recA protein RecA. This model describes or 97.71
cd01121372 Sms Sms (bacterial radA) DNA repair protein. This 97.68
PRK06067234 flagellar accessory protein FlaH; Validated 97.64
PF13207121 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 97.63
COG1373398 Predicted ATPase (AAA+ superfamily) [General funct 97.61
KOG1051 898 consensus Chaperone HSP104 and related ATP-depende 97.61
PRK08533230 flagellar accessory protein FlaH; Reviewed 97.59
cd01394218 radB RadB. The archaeal protein radB shares simila 97.59
cd00983325 recA RecA is a bacterial enzyme which has roles in 97.58
PRK13949169 shikimate kinase; Provisional 97.57
KOG0477854 consensus DNA replication licensing factor, MCM2 c 97.56
COG1618179 Predicted nucleotide kinase [Nucleotide transport 97.55
PRK08118167 topology modulation protein; Reviewed 97.55
PF05707193 Zot: Zonular occludens toxin (Zot); InterPro: IPR0 97.53
PHA00729226 NTP-binding motif containing protein 97.53
PRK00771437 signal recognition particle protein Srp54; Provisi 97.52
PF13671143 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 97.51
PF06480110 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 97.51
PF14516331 AAA_35: AAA-like domain 97.51
TIGR02858270 spore_III_AA stage III sporulation protein AA. Mem 97.5
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 97.46
PRK07261171 topology modulation protein; Provisional 97.46
PRK06762166 hypothetical protein; Provisional 97.44
COG4650531 RtcR Sigma54-dependent transcription regulator con 97.41
PF07693325 KAP_NTPase: KAP family P-loop domain; InterPro: IP 97.41
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 97.41
PRK15455 644 PrkA family serine protein kinase; Provisional 97.38
cd01128249 rho_factor Transcription termination factor rho is 97.37
cd03283199 ABC_MutS-like MutS-like homolog in eukaryotes. The 97.37
PRK10536262 hypothetical protein; Provisional 97.35
PRK09376416 rho transcription termination factor Rho; Provisio 97.35
PRK14722374 flhF flagellar biosynthesis regulator FlhF; Provis 97.35
PF06745226 KaiC: KaiC; InterPro: IPR014774 This entry represe 97.33
cd01123235 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r 97.33
cd01393226 recA_like RecA is a bacterial enzyme which has rol 97.33
KOG2170344 consensus ATPase of the AAA+ superfamily [General 97.32
TIGR03877237 thermo_KaiC_1 KaiC domain protein, Ph0284 family. 97.29
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309127 Torsin: Torsin; InterPro: IPR010448 This family co 97.28
COG5271 4600 MDN1 AAA ATPase containing von Willebrand factor t 97.28
cd00464154 SK Shikimate kinase (SK) is the fifth enzyme in th 97.27
PTZ00202550 tuzin; Provisional 97.27
PF00437270 T2SE: Type II/IV secretion system protein; InterPr 97.25
KOG2228408 consensus Origin recognition complex, subunit 4 [R 97.25
PF13191185 AAA_16: AAA ATPase domain; PDB: 2V1U_A. 97.25
TIGR00416454 sms DNA repair protein RadA. The gene protuct code 97.25
KOG2543 438 consensus Origin recognition complex, subunit 5 [R 97.24
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 97.23
PRK13947171 shikimate kinase; Provisional 97.23
KOG2383467 consensus Predicted ATPase [General function predi 97.2
cd01131198 PilT Pilus retraction ATPase PilT. PilT is a nucle 97.2
COG0703172 AroK Shikimate kinase [Amino acid transport and me 97.2
PRK05973237 replicative DNA helicase; Provisional 97.19
PRK14974336 cell division protein FtsY; Provisional 97.17
TIGR01420343 pilT_fam pilus retraction protein PilT. This model 97.16
PRK03839180 putative kinase; Provisional 97.16
cd01122271 GP4d_helicase GP4d_helicase is a homohexameric 5'- 97.15
PRK04841 903 transcriptional regulator MalT; Provisional 97.15
PRK12339197 2-phosphoglycerate kinase; Provisional 97.15
cd03216163 ABC_Carb_Monos_I This family represents the domain 97.15
PRK04296190 thymidine kinase; Provisional 97.14
PRK09354349 recA recombinase A; Provisional 97.14
PRK13948182 shikimate kinase; Provisional 97.12
PRK13946184 shikimate kinase; Provisional 97.11
TIGR03574249 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem 97.11
PRK00625173 shikimate kinase; Provisional 97.1
cd01130186 VirB11-like_ATPase Type IV secretory pathway compo 97.09
cd00227175 CPT Chloramphenicol (Cm) phosphotransferase (CPT). 97.09
PF10236309 DAP3: Mitochondrial ribosomal death-associated pro 97.09
COG3854308 SpoIIIAA ncharacterized protein conserved in bacte 97.08
PLN02674244 adenylate kinase 97.06
PRK08154309 anaerobic benzoate catabolism transcriptional regu 97.05
PRK05800170 cobU adenosylcobinamide kinase/adenosylcobinamide- 97.05
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 97.04
KOG3347176 consensus Predicted nucleotide kinase/nuclear prot 97.04
COG4178604 ABC-type uncharacterized transport system, permeas 97.03
COG1116248 TauB ABC-type nitrate/sulfonate/bicarbonate transp 97.03
TIGR01359183 UMP_CMP_kin_fam UMP-CMP kinase family. This subfam 97.02
PRK10867433 signal recognition particle protein; Provisional 97.01
TIGR02782299 TrbB_P P-type conjugative transfer ATPase TrbB. Th 97.01
TIGR03880224 KaiC_arch_3 KaiC domain protein, AF_0351 family. T 97.0
cd00984242 DnaB_C DnaB helicase C terminal domain. The hexame 97.0
PRK14532188 adenylate kinase; Provisional 97.0
cd03281213 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS 97.0
PF05272198 VirE: Virulence-associated protein E; InterPro: IP 96.97
cd02020147 CMPK Cytidine monophosphate kinase (CMPK) catalyze 96.97
PRK14531183 adenylate kinase; Provisional 96.96
PRK06217183 hypothetical protein; Validated 96.94
PLN02200234 adenylate kinase family protein 96.92
PF03266168 NTPase_1: NTPase; InterPro: IPR004948 This entry r 96.92
TIGR03881229 KaiC_arch_4 KaiC domain protein, PAE1156 family. M 96.9
cd01428194 ADK Adenylate kinase (ADK) catalyzes the reversibl 96.9
PF04665241 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 96.89
PRK13900332 type IV secretion system ATPase VirB11; Provisiona 96.89
cd01129264 PulE-GspE PulE/GspE The type II secretory pathway 96.89
cd02021150 GntK Gluconate kinase (GntK) catalyzes the phospho 96.88
TIGR03878259 thermo_KaiC_2 KaiC domain protein, AF_0795 family. 96.87
COG0563178 Adk Adenylate kinase and related kinases [Nucleoti 96.87
KOG0732 1080 consensus AAA+-type ATPase containing the bromodom 96.87
PRK13764602 ATPase; Provisional 96.86
cd03238176 ABC_UvrA The excision repair protein UvrA; Nucleot 96.86
PTZ00088229 adenylate kinase 1; Provisional 96.85
cd00544169 CobU Adenosylcobinamide kinase / adenosylcobinamid 96.85
PHA02624647 large T antigen; Provisional 96.85
TIGR02788308 VirB11 P-type DNA transfer ATPase VirB11. The VirB 96.84
PRK04328249 hypothetical protein; Provisional 96.83
PRK14530215 adenylate kinase; Provisional 96.83
PRK06696223 uridine kinase; Validated 96.83
TIGR01313163 therm_gnt_kin carbohydrate kinase, thermoresistant 96.83
PRK04040188 adenylate kinase; Provisional 96.83
TIGR02655484 circ_KaiC circadian clock protein KaiC. Members of 96.83
PRK09519 790 recA DNA recombination protein RecA; Reviewed 96.82
PRK11889436 flhF flagellar biosynthesis regulator FlhF; Provis 96.81
PRK06547172 hypothetical protein; Provisional 96.81
PRK13851344 type IV secretion system protein VirB11; Provision 96.81
cd02027149 APSK Adenosine 5'-phosphosulfate kinase (APSK) cat 96.8
cd03221144 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is 96.79
PRK00279215 adk adenylate kinase; Reviewed 96.78
COG5271 4600 MDN1 AAA ATPase containing von Willebrand factor t 96.77
PHA02530300 pseT polynucleotide kinase; Provisional 96.77
PRK05057172 aroK shikimate kinase I; Reviewed 96.76
TIGR02525372 plasmid_TraJ plasmid transfer ATPase TraJ. Members 96.76
PRK03731171 aroL shikimate kinase II; Reviewed 96.75
COG4088261 Predicted nucleotide kinase [Nucleotide transport 96.75
COG5245 3164 DYN1 Dynein, heavy chain [Cytoskeleton] 96.74
PF13521163 AAA_28: AAA domain; PDB: 1LW7_A. 96.74
cd03223166 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass 96.73
PRK04301317 radA DNA repair and recombination protein RadA; Va 96.73
PRK12724432 flagellar biosynthesis regulator FlhF; Provisional 96.72
TIGR02238313 recomb_DMC1 meiotic recombinase Dmc1. This model d 96.71
cd00267157 ABC_ATPase ABC (ATP-binding cassette) transporter 96.71
TIGR02236310 recomb_radA DNA repair and recombination protein R 96.71
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 96.7
PRK13894319 conjugal transfer ATPase TrbB; Provisional 96.7
cd03246173 ABCC_Protease_Secretion This family represents the 96.69
COG4619223 ABC-type uncharacterized transport system, ATPase 96.68
PF06414199 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e 96.68
smart00487201 DEXDc DEAD-like helicases superfamily. 96.66
PRK13695174 putative NTPase; Provisional 96.65
TIGR01526325 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr 96.64
PRK13808333 adenylate kinase; Provisional 96.64
TIGR01360188 aden_kin_iso1 adenylate kinase, isozyme 1 subfamil 96.63
cd03228171 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein 96.62
cd03243202 ABC_MutS_homologs The MutS protein initiates DNA m 96.61
PRK14528186 adenylate kinase; Provisional 96.61
PRK09302 509 circadian clock protein KaiC; Reviewed 96.61
cd03247178 ABCC_cytochrome_bd The CYD subfamily implicated in 96.61
cd03115173 SRP The signal recognition particle (SRP) mediates 96.6
PRK10416318 signal recognition particle-docking protein FtsY; 96.6
COG1102179 Cmk Cytidylate kinase [Nucleotide transport and me 96.59
PRK14527191 adenylate kinase; Provisional 96.58
KOG0479 818 consensus DNA replication licensing factor, MCM3 c 96.58
smart00534185 MUTSac ATPase domain of DNA mismatch repair MUTS f 96.58
TIGR03499282 FlhF flagellar biosynthetic protein FlhF. 96.57
cd03280200 ABC_MutS2 MutS2 homologs in bacteria and eukaryote 96.57
PRK05703424 flhF flagellar biosynthesis regulator FlhF; Valida 96.57
PLN03187344 meiotic recombination protein DMC1 homolog; Provis 96.57
TIGR00959428 ffh signal recognition particle protein. This mode 96.56
TIGR01351210 adk adenylate kinases. Adenylate kinase (EC 2.7.4. 96.56
PRK05541176 adenylylsulfate kinase; Provisional 96.56
COG2805353 PilT Tfp pilus assembly protein, pilus retraction 96.55
PF00406151 ADK: Adenylate kinase; InterPro: IPR000850 Adenyla 96.55
PRK14730195 coaE dephospho-CoA kinase; Provisional 96.55
PRK13833323 conjugal transfer protein TrbB; Provisional 96.55
PRK08099399 bifunctional DNA-binding transcriptional repressor 96.55
PRK02496184 adk adenylate kinase; Provisional 96.54
TIGR02655 484 circ_KaiC circadian clock protein KaiC. Members of 96.53
cd03222177 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi 96.48
COG1936180 Predicted nucleotide kinase (related to CMP and AM 96.47
PTZ00035337 Rad51 protein; Provisional 96.44
PF13238129 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB 96.42
PF01745233 IPT: Isopentenyl transferase; InterPro: IPR002648 96.42
PHA02774613 E1; Provisional 96.41
cd02022179 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2 96.4
TIGR00064272 ftsY signal recognition particle-docking protein F 96.4
cd03230173 ABC_DR_subfamily_A This family of ATP-binding prot 96.39
TIGR02533486 type_II_gspE general secretory pathway protein E. 96.39
PLN03186342 DNA repair protein RAD51 homolog; Provisional 96.39
COG2274709 SunT ABC-type bacteriocin/lantibiotic exporters, c 96.38
PRK14700 300 recombination factor protein RarA; Provisional 96.38
PF13479213 AAA_24: AAA domain 96.37
TIGR02239316 recomb_RAD51 DNA repair protein RAD51. This eukary 96.37
PF13481193 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C. 96.36
KOG0058716 consensus Peptide exporter, ABC superfamily [Intra 96.35
TIGR00152188 dephospho-CoA kinase. This model produces scores i 96.35
cd01125239 repA Hexameric Replicative Helicase RepA. RepA is 96.34
PRK04182180 cytidylate kinase; Provisional 96.34
cd03213194 ABCG_EPDR ABCG transporters are involved in eye pi 96.33
cd03215182 ABC_Carb_Monos_II This family represents domain II 96.32
PRK01184184 hypothetical protein; Provisional 96.31
TIGR01425429 SRP54_euk signal recognition particle protein SRP5 96.31
COG2804500 PulE Type II secretory pathway, ATPase PulE/Tfp pi 96.31
TIGR00767415 rho transcription termination factor Rho. Members 96.3
cd03227162 ABC_Class2 ABC-type Class 2 contains systems invol 96.29
TIGR02173171 cyt_kin_arch cytidylate kinase, putative. Proteins 96.29
PF08423256 Rad51: Rad51; InterPro: IPR013632 This domain is f 96.26
PRK12337475 2-phosphoglycerate kinase; Provisional 96.25
PRK09302509 circadian clock protein KaiC; Reviewed 96.22
cd03214180 ABC_Iron-Siderophores_B12_Hemin ABC transporters, 96.22
COG1121254 ZnuC ABC-type Mn/Zn transport systems, ATPase comp 96.21
TIGR01069 771 mutS2 MutS2 family protein. Function of MutS2 is u 96.19
cd03232192 ABC_PDR_domain2 The pleiotropic drug resistance-li 96.19
PRK08233182 hypothetical protein; Provisional 96.18
PRK00889175 adenylylsulfate kinase; Provisional 96.18
PRK12338319 hypothetical protein; Provisional 96.18
PF1324576 AAA_19: Part of AAA domain 96.18
TIGR00150133 HI0065_YjeE ATPase, YjeE family. Members of this f 96.17
PLN02199303 shikimate kinase 96.16
PRK13541195 cytochrome c biogenesis protein CcmA; Provisional 96.1
PRK102631355 DNA translocase FtsK; Provisional 96.1
PF08433270 KTI12: Chromatin associated protein KTI12 ; InterP 96.1
cd0201969 NK Nucleoside/nucleotide kinase (NK) is a protein 96.09
TIGR02524358 dot_icm_DotB Dot/Icm secretion system ATPase DotB. 96.06
PRK14526211 adenylate kinase; Provisional 96.05
PRK12608380 transcription termination factor Rho; Provisional 96.04
cd03282204 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS 96.03
TIGR01448 720 recD_rel helicase, putative, RecD/TraA family. Thi 96.03
COG2874235 FlaH Predicted ATPases involved in biogenesis of a 96.02
COG2074299 2-phosphoglycerate kinase [Carbohydrate transport 96.01
cd03229178 ABC_Class3 This class is comprised of all BPD (Bin 95.99
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 95.99
PRK10078186 ribose 1,5-bisphosphokinase; Provisional 95.97
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 95.97
COG1066456 Sms Predicted ATP-dependent serine protease [Postt 95.96
TIGR03819340 heli_sec_ATPase helicase/secretion neighborhood AT 95.96
PF08298358 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi 95.94
PRK06581263 DNA polymerase III subunit delta'; Validated 95.92
COG1136226 SalX ABC-type antimicrobial peptide transport syst 95.91
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-72  Score=626.96  Aligned_cols=414  Identities=51%  Similarity=0.712  Sum_probs=343.9

Q ss_pred             ceechHHHHHHHHcCCccEEEEeCc--EEEEEEecCCcccchhhhhhhchhhhhhhhccCCcceeEEEecCCCCCcchHH
Q 006535          181 VSVPYSDFLSKINSNQVAKVEVDGV--HIMFKLKNDGSIQESEVITNKFQESESLLKSVTPTKRIVYTTTRPSDIKTPYE  258 (641)
Q Consensus       181 ~~~~ys~f~~~~~~~~v~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~  258 (641)
                      ..++|++|++.+..++|++|.+++.  .+..+.+++.                         ...+|.+....+.. ...
T Consensus        23 ~~~~~~~f~~~~~~~~v~~~~~~~~~~~v~~~~~~~~-------------------------~~~~~~~~~~~~~~-~~~   76 (596)
T COG0465          23 KQVTYSQFIQLVSGGKVSSVSIKGDSKTVNLKLKDGS-------------------------KNTVYLPKGVNDPN-LVS   76 (596)
T ss_pred             ccccHHHHHHHHhcCCceEEEEcCCceEEEEEecCCc-------------------------ceEEeecCCcccHH-HHH
Confidence            4589999999999999999999874  4555555541                         11233333323332 344


Q ss_pred             HHHhCCceeccCCCCCcchHHHHHHHHHHHHHHHHHHhhcccccccccCccccccCCCCCCCccccCCCccccccccCCh
Q 006535          259 KMLENQVEFGSPDKRSGGFLNSALIALFYVAVLAGLLHRFPVSFSQTAGQVGHRKTRGPGGAKVSEQGDTITFADVAGVD  338 (641)
Q Consensus       259 ~~~~~~v~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtf~DV~G~e  338 (641)
                      .+..+++......+...+++...+..++++.++.+++..+.....+..+..+...++++......+....++|+|++|.+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~il~~~~~~~~~~r~~~~g~g~~~~~~gkskak~~~~~~~~v~F~DVAG~d  156 (596)
T COG0465          77 FLDSNNITESGFIPEDNSLLASLLSTWLPFILLIGLGWFFFRRQAQGGGGGGAFSFGKSKAKLYLEDQVKVTFADVAGVD  156 (596)
T ss_pred             HHHhcCCcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCChHHHHHhcccccCcChhhhcCcH
Confidence            56666665443332333344444444444443333221111111111111112223333222334556789999999999


Q ss_pred             HHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcchHHHHHHHH
Q 006535          339 EAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFA  418 (641)
Q Consensus       339 e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~vG~~~~~vr~lF~  418 (641)
                      |+|++|.|+|++|++|.+|..+|++.|+|+||+||||||||+||||+|+|+++||+++++++|+++|+|.+++++|++|.
T Consensus       157 Eakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~  236 (596)
T COG0465         157 EAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFE  236 (596)
T ss_pred             HHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEE
Q 006535          419 RAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVV  498 (641)
Q Consensus       419 ~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I  498 (641)
                      +|++++||||||||||+++++|+.+ .++++++++|++||||.+||+|..+.+|+||++||+||.||+||+||||||++|
T Consensus       237 qAkk~aP~IIFIDEiDAvGr~Rg~g-~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI  315 (596)
T COG0465         237 QAKKNAPCIIFIDEIDAVGRQRGAG-LGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQI  315 (596)
T ss_pred             HhhccCCCeEEEehhhhcccccCCC-CCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceee
Confidence            9999999999999999999999766 567899999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcc
Q 006535          499 MVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAG  578 (641)
Q Consensus       499 ~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~rvi~g  578 (641)
                      .++.||..+|++|++.|++++  ++++++++..+|+.|+||+|+||.|++|+|++.|.++++..|++.||++|++++++|
T Consensus       316 ~V~~PDi~gRe~IlkvH~~~~--~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G  393 (596)
T COG0465         316 LVELPDIKGREQILKVHAKNK--PLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAG  393 (596)
T ss_pred             ecCCcchhhHHHHHHHHhhcC--CCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcC
Confidence            999999999999999999764  677899999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCChhHHHHHHHHHhHHHHHHhHHhhcCCCCCceeeEeeeecc
Q 006535          579 IEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEVKDWRDSK  627 (641)
Q Consensus       579 ~~~~~~~l~~~ek~~va~hEaghAlv~~~l~~~~~~~~~v~kiti~~~~  627 (641)
                      .+++...+++.+|+.+||||+|||+++.    ++|++||||||||++-.
T Consensus       394 ~erks~vise~ek~~~AYhEaghalv~~----~l~~~d~v~KvtIiPrG  438 (596)
T COG0465         394 PERKSRVISEAEKKITAYHEAGHALVGL----LLPDADPVHKVTIIPRG  438 (596)
T ss_pred             cCcCCcccChhhhcchHHHHHHHHHHHH----hCCCCcccceeeeccCc
Confidence            9999999999999999999999999997    89999999999999877

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>CHL00176 ftsH cell division protein; Validated Back     alignment and domain information
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed Back     alignment and domain information
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH Back     alignment and domain information
>CHL00206 ycf2 Ycf2; Provisional Back     alignment and domain information
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>PRK03992 proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional Back     alignment and domain information
>CHL00195 ycf46 Ycf46; Provisional Back     alignment and domain information
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01242 26Sp45 26S proteasome subunit P45 family Back     alignment and domain information
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03689 pup_AAA proteasome ATPase Back     alignment and domain information
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional Back     alignment and domain information
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit Back     alignment and domain information
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair Back     alignment and domain information
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR02902 spore_lonB ATP-dependent protease LonB Back     alignment and domain information
>TIGR00763 lon ATP-dependent protease La Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>PRK04195 replication factor C large subunit; Provisional Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>PRK12422 chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau Back     alignment and domain information
>PRK05563 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] Back     alignment and domain information
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>PRK07133 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK05896 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK06647 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK06305 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK10787 DNA-binding ATP-dependent protease La; Provisional Back     alignment and domain information
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK06620 hypothetical protein; Validated Back     alignment and domain information
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional Back     alignment and domain information
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK13407 bchI magnesium chelatase subunit I; Provisional Back     alignment and domain information
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function Back     alignment and domain information
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN Back     alignment and domain information
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family Back     alignment and domain information
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional Back     alignment and domain information
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) Back     alignment and domain information
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>CHL00081 chlI Mg-protoporyphyrin IX chelatase Back     alignment and domain information
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I Back     alignment and domain information
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins Back     alignment and domain information
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR Back     alignment and domain information
>TIGR00368 Mg chelatase-related protein Back     alignment and domain information
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional Back     alignment and domain information
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair] Back     alignment and domain information
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit Back     alignment and domain information
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>COG0714 MoxR-like ATPases [General function prediction only] Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>TIGR00764 lon_rel lon-related putative ATP-dependent protease Back     alignment and domain information
>smart00350 MCM minichromosome maintenance proteins Back     alignment and domain information
>TIGR01817 nifA Nif-specific regulatory protein Back     alignment and domain information
>PRK13531 regulatory ATPase RavA; Provisional Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional Back     alignment and domain information
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF Back     alignment and domain information
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX Back     alignment and domain information
>PHA02244 ATPase-like protein Back     alignment and domain information
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK09862 putative ATP-dependent protease; Provisional Back     alignment and domain information
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK05564 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional Back     alignment and domain information
>TIGR00602 rad24 checkpoint protein rad24 Back     alignment and domain information
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] Back     alignment and domain information
>TIGR00678 holB DNA polymerase III, delta' subunit Back     alignment and domain information
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D Back     alignment and domain information
>PRK07399 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional Back     alignment and domain information
>PRK04132 replication factor C small subunit; Provisional Back     alignment and domain information
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator Back     alignment and domain information
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription] Back     alignment and domain information
>PRK08058 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] Back     alignment and domain information
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor Back     alignment and domain information
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] Back     alignment and domain information
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>smart00763 AAA_PrkA PrkA AAA domain Back     alignment and domain information
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional Back     alignment and domain information
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>PTZ00111 DNA replication licensing factor MCM4; Provisional Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair] Back     alignment and domain information
>PRK13765 ATP-dependent protease Lon; Provisional Back     alignment and domain information
>PRK15115 response regulator GlrR; Provisional Back     alignment and domain information
>TIGR01818 ntrC nitrogen regulation protein NR(I) Back     alignment and domain information
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A Back     alignment and domain information
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair] Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK13406 bchD magnesium chelatase subunit D; Provisional Back     alignment and domain information
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK06964 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model Back     alignment and domain information
>PRK10365 transcriptional regulatory protein ZraR; Provisional Back     alignment and domain information
>PRK06871 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>PRK08939 primosomal protein DnaI; Reviewed Back     alignment and domain information
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK07993 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>PF03215 Rad17: Rad17 cell cycle checkpoint protein Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] Back     alignment and domain information
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK06090 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif Back     alignment and domain information
>PRK08699 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair] Back     alignment and domain information
>PF05729 NACHT: NACHT domain Back     alignment and domain information
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair] Back     alignment and domain information
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP Back     alignment and domain information
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair] Back     alignment and domain information
>PLN03210 Resistant to P Back     alignment and domain information
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite Back     alignment and domain information
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR02237 recomb_radB DNA repair and recombination protein RadB Back     alignment and domain information
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] Back     alignment and domain information
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A Back     alignment and domain information
>PRK05917 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK05818 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>TIGR01618 phage_P_loop phage nucleotide-binding protein Back     alignment and domain information
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair] Back     alignment and domain information
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair] Back     alignment and domain information
>TIGR02688 conserved hypothetical protein TIGR02688 Back     alignment and domain information
>COG1485 Predicted ATPase [General function prediction only] Back     alignment and domain information
>PRK07132 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5) Back     alignment and domain information
>PRK00131 aroK shikimate kinase; Reviewed Back     alignment and domain information
>PRK07276 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK11823 DNA repair protein RadA; Provisional Back     alignment and domain information
>PRK09361 radB DNA repair and recombination protein RadB; Provisional Back     alignment and domain information
>TIGR02012 tigrfam_recA protein RecA Back     alignment and domain information
>cd01121 Sms Sms (bacterial radA) DNA repair protein Back     alignment and domain information
>PRK06067 flagellar accessory protein FlaH; Validated Back     alignment and domain information
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A Back     alignment and domain information
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK08533 flagellar accessory protein FlaH; Reviewed Back     alignment and domain information
>cd01394 radB RadB Back     alignment and domain information
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>PRK13949 shikimate kinase; Provisional Back     alignment and domain information
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair] Back     alignment and domain information
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK08118 topology modulation protein; Reviewed Back     alignment and domain information
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot) Back     alignment and domain information
>PHA00729 NTP-binding motif containing protein Back     alignment and domain information
>PRK00771 signal recognition particle protein Srp54; Provisional Back     alignment and domain information
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B Back     alignment and domain information
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF14516 AAA_35: AAA-like domain Back     alignment and domain information
>TIGR02858 spore_III_AA stage III sporulation protein AA Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PRK07261 topology modulation protein; Provisional Back     alignment and domain information
>PRK06762 hypothetical protein; Provisional Back     alignment and domain information
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK15455 PrkA family serine protein kinase; Provisional Back     alignment and domain information
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase Back     alignment and domain information
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>PRK09376 rho transcription termination factor Rho; Provisional Back     alignment and domain information
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical Back     alignment and domain information
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B Back     alignment and domain information
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only] Back     alignment and domain information
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family Back     alignment and domain information
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins Back     alignment and domain information
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants Back     alignment and domain information
>PTZ00202 tuzin; Provisional Back     alignment and domain information
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] Back     alignment and domain information
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair] Back     alignment and domain information
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A Back     alignment and domain information
>TIGR00416 sms DNA repair protein RadA Back     alignment and domain information
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair] Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>PRK13947 shikimate kinase; Provisional Back     alignment and domain information
>KOG2383 consensus Predicted ATPase [General function prediction only] Back     alignment and domain information
>cd01131 PilT Pilus retraction ATPase PilT Back     alignment and domain information
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK05973 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>TIGR01420 pilT_fam pilus retraction protein PilT Back     alignment and domain information
>PRK03839 putative kinase; Provisional Back     alignment and domain information
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>PRK12339 2-phosphoglycerate kinase; Provisional Back     alignment and domain information
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>PRK09354 recA recombinase A; Provisional Back     alignment and domain information
>PRK13948 shikimate kinase; Provisional Back     alignment and domain information
>PRK13946 shikimate kinase; Provisional Back     alignment and domain information
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal Back     alignment and domain information
>PRK00625 shikimate kinase; Provisional Back     alignment and domain information
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases Back     alignment and domain information
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT) Back     alignment and domain information
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PLN02674 adenylate kinase Back     alignment and domain information
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed Back     alignment and domain information
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism] Back     alignment and domain information
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] Back     alignment and domain information
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family Back     alignment and domain information
>PRK10867 signal recognition particle protein; Provisional Back     alignment and domain information
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB Back     alignment and domain information
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family Back     alignment and domain information
>cd00984 DnaB_C DnaB helicase C terminal domain Back     alignment and domain information
>PRK14532 adenylate kinase; Provisional Back     alignment and domain information
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes Back     alignment and domain information
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins Back     alignment and domain information
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor Back     alignment and domain information
>PRK14531 adenylate kinase; Provisional Back     alignment and domain information
>PRK06217 hypothetical protein; Validated Back     alignment and domain information
>PLN02200 adenylate kinase family protein Back     alignment and domain information
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] Back     alignment and domain information
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family Back     alignment and domain information
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP) Back     alignment and domain information
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein Back     alignment and domain information
>PRK13900 type IV secretion system ATPase VirB11; Provisional Back     alignment and domain information
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) Back     alignment and domain information
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate Back     alignment and domain information
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family Back     alignment and domain information
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK13764 ATPase; Provisional Back     alignment and domain information
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion Back     alignment and domain information
>PTZ00088 adenylate kinase 1; Provisional Back     alignment and domain information
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU) Back     alignment and domain information
>PHA02624 large T antigen; Provisional Back     alignment and domain information
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 Back     alignment and domain information
>PRK04328 hypothetical protein; Provisional Back     alignment and domain information
>PRK14530 adenylate kinase; Provisional Back     alignment and domain information
>PRK06696 uridine kinase; Validated Back     alignment and domain information
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family Back     alignment and domain information
>PRK04040 adenylate kinase; Provisional Back     alignment and domain information
>TIGR02655 circ_KaiC circadian clock protein KaiC Back     alignment and domain information
>PRK09519 recA DNA recombination protein RecA; Reviewed Back     alignment and domain information
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK06547 hypothetical protein; Provisional Back     alignment and domain information
>PRK13851 type IV secretion system protein VirB11; Provisional Back     alignment and domain information
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS) Back     alignment and domain information
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth Back     alignment and domain information
>PRK00279 adk adenylate kinase; Reviewed Back     alignment and domain information
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>PHA02530 pseT polynucleotide kinase; Provisional Back     alignment and domain information
>PRK05057 aroK shikimate kinase I; Reviewed Back     alignment and domain information
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ Back     alignment and domain information
>PRK03731 aroL shikimate kinase II; Reviewed Back     alignment and domain information
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton] Back     alignment and domain information
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A Back     alignment and domain information
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome Back     alignment and domain information
>PRK04301 radA DNA repair and recombination protein RadA; Validated Back     alignment and domain information
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1 Back     alignment and domain information
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules Back     alignment and domain information
>TIGR02236 recomb_radA DNA repair and recombination protein RadA Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>PRK13894 conjugal transfer ATPase TrbB; Provisional Back     alignment and domain information
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain Back     alignment and domain information
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] Back     alignment and domain information
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein [] Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PRK13695 putative NTPase; Provisional Back     alignment and domain information
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type Back     alignment and domain information
>PRK13808 adenylate kinase; Provisional Back     alignment and domain information
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily Back     alignment and domain information
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export Back     alignment and domain information
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch Back     alignment and domain information
>PRK14528 adenylate kinase; Provisional Back     alignment and domain information
>PRK09302 circadian clock protein KaiC; Reviewed Back     alignment and domain information
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis Back     alignment and domain information
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes Back     alignment and domain information
>PRK10416 signal recognition particle-docking protein FtsY; Provisional Back     alignment and domain information
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK14527 adenylate kinase; Provisional Back     alignment and domain information
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair] Back     alignment and domain information
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family Back     alignment and domain information
>TIGR03499 FlhF flagellar biosynthetic protein FlhF Back     alignment and domain information
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes Back     alignment and domain information
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional Back     alignment and domain information
>TIGR00959 ffh signal recognition particle protein Back     alignment and domain information
>TIGR01351 adk adenylate kinases Back     alignment and domain information
>PRK05541 adenylylsulfate kinase; Provisional Back     alignment and domain information
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells Back     alignment and domain information
>PRK14730 coaE dephospho-CoA kinase; Provisional Back     alignment and domain information
>PRK13833 conjugal transfer protein TrbB; Provisional Back     alignment and domain information
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional Back     alignment and domain information
>PRK02496 adk adenylate kinase; Provisional Back     alignment and domain information
>TIGR02655 circ_KaiC circadian clock protein KaiC Back     alignment and domain information
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids Back     alignment and domain information
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] Back     alignment and domain information
>PTZ00035 Rad51 protein; Provisional Back     alignment and domain information
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C Back     alignment and domain information
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [] Back     alignment and domain information
>PHA02774 E1; Provisional Back     alignment and domain information
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2 Back     alignment and domain information
>TIGR00064 ftsY signal recognition particle-docking protein FtsY Back     alignment and domain information
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity Back     alignment and domain information
>TIGR02533 type_II_gspE general secretory pathway protein E Back     alignment and domain information
>PLN03186 DNA repair protein RAD51 homolog; Provisional Back     alignment and domain information
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] Back     alignment and domain information
>PRK14700 recombination factor protein RarA; Provisional Back     alignment and domain information
>PF13479 AAA_24: AAA domain Back     alignment and domain information
>TIGR02239 recomb_RAD51 DNA repair protein RAD51 Back     alignment and domain information
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C Back     alignment and domain information
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR00152 dephospho-CoA kinase Back     alignment and domain information
>cd01125 repA Hexameric Replicative Helicase RepA Back     alignment and domain information
>PRK04182 cytidylate kinase; Provisional Back     alignment and domain information
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) Back     alignment and domain information
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) Back     alignment and domain information
>PRK01184 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01425 SRP54_euk signal recognition particle protein SRP54 Back     alignment and domain information
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR00767 rho transcription termination factor Rho Back     alignment and domain information
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport Back     alignment and domain information
>TIGR02173 cyt_kin_arch cytidylate kinase, putative Back     alignment and domain information
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51 Back     alignment and domain information
>PRK12337 2-phosphoglycerate kinase; Provisional Back     alignment and domain information
>PRK09302 circadian clock protein KaiC; Reviewed Back     alignment and domain information
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea Back     alignment and domain information
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01069 mutS2 MutS2 family protein Back     alignment and domain information
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters Back     alignment and domain information
>PRK08233 hypothetical protein; Provisional Back     alignment and domain information
>PRK00889 adenylylsulfate kinase; Provisional Back     alignment and domain information
>PRK12338 hypothetical protein; Provisional Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>TIGR00150 HI0065_YjeE ATPase, YjeE family Back     alignment and domain information
>PLN02199 shikimate kinase Back     alignment and domain information
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional Back     alignment and domain information
>PRK10263 DNA translocase FtsK; Provisional Back     alignment and domain information
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II [] Back     alignment and domain information
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars Back     alignment and domain information
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB Back     alignment and domain information
>PRK14526 adenylate kinase; Provisional Back     alignment and domain information
>PRK12608 transcription termination factor Rho; Provisional Back     alignment and domain information
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes Back     alignment and domain information
>TIGR01448 recD_rel helicase, putative, RecD/TraA family Back     alignment and domain information
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>PRK10078 ribose 1,5-bisphosphokinase; Provisional Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase Back     alignment and domain information
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length Back     alignment and domain information
>PRK06581 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query641
2ce7_A 476 Edta Treated Length = 476 2e-81
3kds_E 465 Apo-ftsh Crystal Structure Length = 465 9e-81
2r62_A268 Crystal Structure Of Helicobacter Pylori Atp Depend 1e-77
1lv7_A257 Crystal Structure Of The Aaa Domain Of Ftsh Length 4e-75
2dhr_A 499 Whole Cytosolic Region Of Atp-Dependent Metalloprot 5e-71
4eiw_A 508 Whole Cytosolic Region Of Atp-Dependent Metalloprot 6e-71
1iy2_A278 Crystal Structure Of The Ftsh Atpase Domain From Th 8e-67
1ixz_A254 Crystal Structure Of The Ftsh Atpase Domain From Th 1e-66
2qz4_A262 Human Paraplegin, Aaa Domain In Complex With Adp Le 4e-61
3h4m_A285 Aaa Atpase Domain Of The Proteasome- Activating Nuc 2e-53
3cf0_A301 Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH 5e-49
3cf1_A806 Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Len 9e-49
1r7r_A816 The Crystal Structure Of Murine P97VCP AT 3.6A Leng 9e-49
4b4t_L437 Near-Atomic Resolution Structural Model Of The Yeas 5e-44
4b4t_H467 Near-Atomic Resolution Structural Model Of The Yeas 1e-43
4b4t_M434 Near-Atomic Resolution Structural Model Of The Yeas 2e-43
4b4t_K428 Near-Atomic Resolution Structural Model Of The Yeas 5e-43
4b4t_I437 Near-Atomic Resolution Structural Model Of The Yeas 4e-42
2x8a_A274 Human Nuclear Valosin Containing Protein Like (Nvl) 2e-40
1e32_A458 Structure Of The N-Terminal Domain And The D1 Aaa D 4e-40
3hu3_A489 Structure Of P97 N-D1 R155h Mutant In Complex With 5e-40
3hu2_A489 Structure Of P97 N-D1 R86a Mutant In Complex With A 5e-40
3hu1_A489 Structure Of P97 N-D1 R95g Mutant In Complex With A 5e-40
4b4t_J405 Near-Atomic Resolution Structural Model Of The Yeas 2e-39
3vfd_A389 Human Spastin Aaa Domain Length = 389 1e-30
3eih_A340 Crystal Structure Of S.Cerevisiae Vps4 In The Prese 5e-30
2qp9_X355 Crystal Structure Of S.Cerevisiae Vps4 Length = 355 8e-30
2rko_A331 Crystal Structure Of The Vps4p-Dimer Length = 331 1e-29
3eie_A322 Crystal Structure Of S.Cerevisiae Vps4 In The So4-B 3e-29
1xwi_A322 Crystal Structure Of Vps4b Length = 322 8e-29
2zam_A444 Crystal Structure Of Mouse Skd1VPS4B APO-Form Lengt 9e-29
3d8b_A357 Crystal Structure Of Human Fidgetin-Like Protein 1 1e-27
3b9p_A297 Spastin Length = 297 1e-27
1ofh_A310 Asymmetric Complex Between Hslv And I-domain Delete 6e-07
1um8_A376 Crystal Structure Of Helicobacter Pylori Clpx Lengt 5e-05
3hte_A363 Crystal Structure Of Nucleotide-Free Hexameric Clpx 1e-04
3hws_A363 Crystal Structure Of Nucleotide-Bound Hexameric Clp 1e-04
1g3i_A 444 Crystal Structure Of The Hsluv Protease-Chaperone C 3e-04
1do2_A 442 Trigonal Crystal Form Of Heat Shock Locus U (Hslu) 4e-04
1e94_E 449 Hslv-Hslu From E.Coli Length = 449 4e-04
1g4a_E 443 Crystal Structures Of The Hslvu Peptidase-Atpase Co 4e-04
1im2_A 444 Hslu, Haemophilus Influenzae, Selenomethionine Vari 6e-04
>pdb|2CE7|A Chain A, Edta Treated Length = 476 Back     alignment and structure 
Iteration: 1

 Score =  300 bits (767), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 157/288 (54%), Positives = 201/288 (69%), Gaps = 6/288 (2%)
Query: 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE 388
           +TF DV G +EA EEL+E+VEFL+ P K+ R+GAR P+G+LLVG PGTGKTLLA+AVAGE
Sbjct: 13  VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72
Query: 389 AEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVS 448
           A VPF   S S+FVEL+VG+GA+RVRDLFA+AK  AP I+FIDEIDAV + R G      
Sbjct: 73  ANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHR-GAGLGGG 131
Query: 449 NDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGR 508
           +DEREQTLNQLL EMDGFDS   +IV+ ATNR D+LDPAL RPGRFD+ ++V+ PD +GR
Sbjct: 132 HDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGR 191
Query: 509 EAILKVHVSKKELPLAKDIDLGDIASMTTGFTGXXXXXXXXXXXXXXGRLNKVVVEKIDF 568
           + IL++H   K  PLA+D++L  IA  T GF G               R  +  +   DF
Sbjct: 192 KKILEIHTRNK--PLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDF 249
Query: 569 IHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQP 616
             A++R IAG  +K+  +  +EK ++A HEAGHAVV T V +   G+P
Sbjct: 250 EEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPN---GEP 294
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure Length = 465 Back     alignment and structure
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent Protease, Ftsh Length = 268 Back     alignment and structure
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh Length = 257 Back     alignment and structure
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 499 Back     alignment and structure
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 508 Back     alignment and structure
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 278 Back     alignment and structure
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 254 Back     alignment and structure
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp Length = 262 Back     alignment and structure
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase Length = 285 Back     alignment and structure
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP Length = 301 Back     alignment and structure
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Length = 806 Back     alignment and structure
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A Length = 816 Back     alignment and structure
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437 Back     alignment and structure
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 467 Back     alignment and structure
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 434 Back     alignment and structure
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 428 Back     alignment and structure
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437 Back     alignment and structure
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C- Terminal Aaa-Atpase Domain Length = 274 Back     alignment and structure
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain Of Membrane Fusion Atpase P97 Length = 458 Back     alignment and structure
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs Length = 489 Back     alignment and structure
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs Length = 489 Back     alignment and structure
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs Length = 489 Back     alignment and structure
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 405 Back     alignment and structure
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain Length = 389 Back     alignment and structure
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of Atpgammas Length = 340 Back     alignment and structure
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4 Length = 355 Back     alignment and structure
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer Length = 331 Back     alignment and structure
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound State Length = 322 Back     alignment and structure
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b Length = 322 Back     alignment and structure
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form Length = 444 Back     alignment and structure
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In Complex With Adp Length = 357 Back     alignment and structure
>pdb|3B9P|A Chain A, Spastin Length = 297 Back     alignment and structure
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu (h. Influenzae) Length = 310 Back     alignment and structure
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx Length = 376 Back     alignment and structure
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx Length = 363 Back     alignment and structure
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx Length = 363 Back     alignment and structure
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex Length = 444 Back     alignment and structure
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From Escherichia Coli Length = 442 Back     alignment and structure
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli Length = 449 Back     alignment and structure
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex Reveal An Atp-Dependent Proteolysis Mechanism Length = 443 Back     alignment and structure
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant Length = 444 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query641
2ce7_A 476 Cell division protein FTSH; metalloprotease; HET: 1e-165
2dhr_A 499 FTSH; AAA+ protein, hexameric Zn metalloprotease, 1e-164
2r62_A268 Cell division protease FTSH homolog; ATPase domain 1e-153
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 1e-151
1lv7_A257 FTSH; alpha/beta domain, four helix bundle, hydrol 1e-144
1iy2_A278 ATP-dependent metalloprotease FTSH; AAA domain fol 1e-141
1ixz_A254 ATP-dependent metalloprotease FTSH; AAA domain fol 1e-140
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 1e-105
3cf0_A301 Transitional endoplasmic reticulum ATPase; AAA, P9 2e-95
3hu3_A489 Transitional endoplasmic reticulum ATPase; VCP, tr 4e-95
2x8a_A274 Nuclear valosin-containing protein-like; nuclear p 3e-93
1ypw_A806 Transitional endoplasmic reticulum ATPase; AAA, P9 1e-88
1ypw_A 806 Transitional endoplasmic reticulum ATPase; AAA, P9 7e-81
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 3e-78
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 2e-76
3b9p_A297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 3e-75
3d8b_A357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 8e-75
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 2e-72
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 3e-72
2zan_A444 Vacuolar protein sorting-associating protein 4B; S 7e-68
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 1e-64
3t15_A293 Ribulose bisphosphate carboxylase/oxygenase activ 1e-64
3vlf_B88 26S protease regulatory subunit 7 homolog; heat re 5e-32
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 3e-26
2krk_A86 26S protease regulatory subunit 8; structural geno 2e-25
2c9o_A456 RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- 5e-25
3kw6_A78 26S protease regulatory subunit 8; structural geno 5e-25
2dzn_B82 26S protease regulatory subunit 6B homolog; ankyri 5e-21
3aji_B83 S6C, proteasome (prosome, macropain) 26S subunit, 4e-20
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
1ofh_A310 ATP-dependent HSL protease ATP-binding subunit HSL 2e-08
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 3e-08
3pvs_A 447 Replication-associated recombination protein A; ma 7e-08
1sxj_A 516 Activator 1 95 kDa subunit; clamp loader, processi 2e-07
2qby_A386 CDC6 homolog 1, cell division control protein 6 ho 3e-07
1w5s_A412 Origin recognition complex subunit 2 ORC2; replica 2e-06
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 3e-06
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 8e-06
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 2e-05
2v1u_A387 Cell division control protein 6 homolog; DNA repli 7e-05
1um8_A376 ATP-dependent CLP protease ATP-binding subunit CL; 9e-05
3hws_A363 ATP-dependent CLP protease ATP-binding subunit CL; 2e-04
1zp6_A191 Hypothetical protein ATU3015; alpha-beta protein., 2e-04
2chg_A226 Replication factor C small subunit; DNA-binding pr 3e-04
2rhm_A193 Putative kinase; P-loop containing nucleoside trip 3e-04
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 5e-04
2chq_A319 Replication factor C small subunit; DNA-binding pr 5e-04
1g8p_A350 Magnesium-chelatase 38 kDa subunit; parallel beta 6e-04
2qgz_A308 Helicase loader, putative primosome component; str 7e-04
2di4_A 238 Zinc protease, cell division protein FTSH homolog; 7e-04
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Length = 476 Back     alignment and structure
 Score =  481 bits (1241), Expect = e-165
 Identities = 170/295 (57%), Positives = 213/295 (72%), Gaps = 13/295 (4%)

Query: 320 AKVSEQGD--TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTG 377
           A + +      +TF DV G +EA EEL+E+VEFL+ P K+ R+GAR P+G+LLVG PGTG
Sbjct: 2   ATMYKPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTG 61

Query: 378 KTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVA 437
           KTLLA+AVAGEA VPF   S S+FVEL+VG+GA+RVRDLFA+AK  AP I+FIDEIDAV 
Sbjct: 62  KTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAV- 120

Query: 438 KSRDGRFRIV----SNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGR 493
               GR R       +DEREQTLNQLL EMDGFDS   +IV+ ATNR D+LDPAL RPGR
Sbjct: 121 ----GRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGR 176

Query: 494 FDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL 553
           FD+ ++V+ PD +GR+ IL++H   K  PLA+D++L  IA  T GF GADL NLVNEAAL
Sbjct: 177 FDKKIVVDPPDMLGRKKILEIHTRNK--PLAEDVNLEIIAKRTPGFVGADLENLVNEAAL 234

Query: 554 LAGRLNKVVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAV 608
           LA R  +  +   DF  A++R IAG  +K+  +  +EK ++A HEAGHAVV T V
Sbjct: 235 LAAREGRDKITMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVV 289
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Length = 499 Back     alignment and structure
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Length = 268 Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Length = 262 Back     alignment and structure
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Length = 257 Back     alignment and structure
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Length = 278 Back     alignment and structure
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Length = 254 Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Length = 285 Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Length = 301 Back     alignment and structure
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489 Back     alignment and structure
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Length = 274 Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Length = 322 Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Length = 322 Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Length = 297 Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Length = 357 Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Length = 355 Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Length = 389 Back     alignment and structure
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Length = 444 Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Length = 272 Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Length = 293 Back     alignment and structure
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B* Length = 88 Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Length = 309 Back     alignment and structure
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens} Length = 86 Back     alignment and structure
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Length = 456 Back     alignment and structure
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens} Length = 78 Back     alignment and structure
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B Length = 82 Back     alignment and structure
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B* Length = 83 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Length = 310 Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 384 Back     alignment and structure
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Length = 447 Back     alignment and structure
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516 Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 386 Back     alignment and structure
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Length = 412 Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Length = 389 Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Length = 180 Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Length = 318 Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Length = 387 Back     alignment and structure
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 Length = 376 Back     alignment and structure
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A Length = 363 Back     alignment and structure
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Length = 191 Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Length = 226 Back     alignment and structure
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193 Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Length = 202 Back     alignment and structure
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Length = 319 Back     alignment and structure
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Length = 350 Back     alignment and structure
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Length = 308 Back     alignment and structure
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1 Length = 238 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 641
d1lv7a_256 c.37.1.20 (A:) AAA domain of cell division protein 1e-112
d1ixza_247 c.37.1.20 (A:) AAA domain of cell division protein 1e-105
d1r7ra3265 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p 5e-74
d1w44a_321 c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta 8e-70
d1e32a2258 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p 1e-58
d1gvnb_273 c.37.1.21 (B:) Plasmid maintenance system epsilon/ 1e-52
d1svma_362 c.37.1.20 (A:) Papillomavirus large T antigen heli 1e-51
d1d2na_246 c.37.1.20 (A:) Hexamerization domain of N-ethylmal 4e-37
d1ixsb2239 c.37.1.20 (B:4-242) Holliday junction helicase Ruv 1e-32
d1fnna2276 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob 4e-28
d1ofha_309 c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId 3e-25
d1in4a2238 c.37.1.20 (A:17-254) Holliday junction helicase Ru 3e-19
d1w5sa2287 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t 1e-15
d1sxja2253 c.37.1.20 (A:295-547) Replication factor C1 {Baker 1e-15
d1g41a_ 443 c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId 5e-11
d1njfa_239 c.37.1.20 (A:) delta prime subunit of DNA polymera 4e-09
d1g8pa_333 c.37.1.20 (A:) ATPase subunit of magnesium chelata 1e-05
d1um8a_364 c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 2 2e-05
d1zp6a1176 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { 5e-05
d1sxje2252 c.37.1.20 (E:4-255) Replication factor C5 {Baker's 2e-04
d1qhxa_178 c.37.1.3 (A:) Chloramphenicol phosphotransferase { 8e-04
d1sxjd2237 c.37.1.20 (D:26-262) Replication factor C2 {Baker' 0.002
d1qvra3315 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus 0.002
d2di4a1 202 a.269.1.1 (A:406-607) Cell division protein FtsH, 0.003
d1r6bx3315 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, A 0.003
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

 Score =  335 bits (860), Expect = e-112
 Identities = 158/258 (61%), Positives = 194/258 (75%), Gaps = 3/258 (1%)

Query: 322 VSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLL 381
           ++E     TFADVAG DEAKEE+ E+VE+LR P ++ +LG + P+GVL+VG PGTGKTLL
Sbjct: 2   LTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLL 61

Query: 382 AKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRD 441
           AKA+AGEA+VPF + S S+FVE++VG+GASRVRD+F +AKK AP IIFIDEIDAV + R 
Sbjct: 62  AKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRG 121

Query: 442 GRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVE 501
                  +DEREQTLNQ+L EMDGF+ N  +IV+ ATNR DVLDPAL RPGRFDR V+V 
Sbjct: 122 AG-LGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVG 180

Query: 502 TPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 561
            PD  GRE ILKVH+ +   PLA DID   IA  T GF+GADLANLVNEAAL A R NK 
Sbjct: 181 LPDVRGREQILKVHMRRV--PLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKR 238

Query: 562 VVEKIDFIHAVERSIAGI 579
           VV  ++F  A ++ + G+
Sbjct: 239 VVSMVEFEKAKDKIMMGL 256
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247 Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 265 Back     information, alignment and structure
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321 Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 258 Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273 Back     information, alignment and structure
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362 Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246 Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239 Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276 Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309 Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238 Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287 Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 253 Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 443 Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 239 Back     information, alignment and structure
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Length = 333 Back     information, alignment and structure
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Length = 364 Back     information, alignment and structure
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252 Back     information, alignment and structure
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178 Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237 Back     information, alignment and structure
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Length = 315 Back     information, alignment and structure
>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 202 Back     information, alignment and structure
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Length = 315 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query641
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 100.0
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 100.0
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 100.0
d1r7ra3265 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 100.0
d1w44a_321 NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} 100.0
d1d2na_246 Hexamerization domain of N-ethylmalemide-sensitive 99.97
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 99.97
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 99.96
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 99.96
d1svma_362 Papillomavirus large T antigen helicase domain {Si 99.9
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 99.9
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 99.89
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 99.89
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 99.89
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 99.87
d1w5sa2287 CDC6-like protein APE0152, N-terminal domain {Aero 99.86
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 99.86
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 99.85
d1g8pa_333 ATPase subunit of magnesium chelatase, BchI {Rhodo 99.84
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 99.84
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 99.82
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 99.82
d1qvra2387 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 99.75
d1r6bx3315 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 99.74
d1um8a_364 ClpX {Helicobacter pylori [TaxId: 210]} 99.72
d1qvra3315 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 99.7
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 99.68
d1g41a_443 HslU {Haemophilus influenzae [TaxId: 727]} 99.67
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 99.63
d1ny5a2247 Transcriptional activator sigm54 (NtrC1), C-termin 99.6
d1gvnb_273 Plasmid maintenance system epsilon/zeta, toxin zet 99.57
d2fnaa2283 Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ 99.34
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 99.25
d1ye8a1178 Hypothetical kinase-like protein Aq_1292 {Aquifex 98.6
d2a5yb3277 CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI 98.4
d1zp6a1176 Hypothetical protein Atu3015 {Agrobacterium tumefa 98.26
d1kaga_169 Shikimate kinase (AroK) {Escherichia coli [TaxId: 98.16
d1lw7a2192 Transcriptional regulator NadR, ribosylnicotinamid 98.14
d1viaa_161 Shikimate kinase (AroK) {Campylobacter jejuni [Tax 98.1
d1tf7a2242 Circadian clock protein KaiC {Synechococcus sp. st 98.03
d1e6ca_170 Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax 98.0
d2iyva1165 Shikimate kinase (AroK) {Mycobacterium tuberculosi 97.97
d1qhxa_178 Chloramphenicol phosphotransferase {Streptomyces v 97.91
d2qy9a2211 GTPase domain of the signal recognition particle r 97.83
d1rkba_173 Adenylate kinase {Human (Homo sapiens), isoenzyme 97.82
d1okkd2207 GTPase domain of the signal recognition particle r 97.81
d1zaka1189 Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} 97.8
d1yj5a2172 5' polynucleotide kinase-3' phosphatase, C-termina 97.78
d3b60a1253 Multidrug resistance ABC transporter MsbA, C-termi 97.76
d1tf7a1242 Circadian clock protein KaiC {Synechococcus sp. st 97.75
d1xp8a1268 RecA protein, ATPase-domain {Deinococcus radiodura 97.74
d1p9ra_401 Extracellular secretion NTPase EpsE {Vibrio choler 97.73
d2hyda1255 Putative multidrug export ATP-binding/permease pro 97.72
d1g6oa_323 Hexameric traffic ATPase, HP0525 {Helicobacter pyl 97.71
d1teva_194 UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] 97.67
d1qf9a_194 UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 97.67
d3adka_194 Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} 97.66
d1j8yf2211 GTPase domain of the signal sequence recognition p 97.66
d1u94a1263 RecA protein, ATPase-domain {Escherichia coli [Tax 97.64
d1cr2a_277 Gene 4 protein (g4p, DNA primase), helicase domain 97.64
d2pmka1241 Haemolysin B ATP-binding protein {Escherichia coli 97.63
d1knqa_171 Gluconate kinase {Escherichia coli [TaxId: 562]} 97.62
d2i3ba1189 Cancer-related NTPase, C1orf57 {Human (Homo sapien 97.6
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 97.59
d2bdta1176 Hypothetical protein BH3686 {Bacillus halodurans [ 97.58
d1bifa1213 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata 97.58
d1y63a_174 Probable kinase LmjF30.1890 {Leishmania major [Tax 97.57
d1jj7a_251 Peptide transporter Tap1, C-terminal ABC domain {H 97.57
d1tuea_205 Replication protein E1 helicase domain {Human papi 97.54
d1ak2a1190 Adenylate kinase {Cow (Bos taurus), mitochondrial 97.5
d1ckea_225 CMP kinase {Escherichia coli [TaxId: 562]} 97.5
d1ukza_196 Uridylate kinase {Baker's yeast (Saccharomyces cer 97.49
d1zina1182 Adenylate kinase {Bacillus stearothermophilus [Tax 97.48
d1ls1a2207 GTPase domain of the signal sequence recognition p 97.45
d2ak3a1189 Adenylate kinase {Cow (Bos taurus), mitochondrial 97.44
d1ly1a_152 Polynucleotide kinase, kinase domain {Bacteriophag 97.43
d2cdna1181 Adenylate kinase {Mycobacterium tuberculosis [TaxI 97.41
d1mo6a1269 RecA protein, ATPase-domain {Mycobacterium tubercu 97.4
d1s3ga1182 Adenylate kinase {Bacillus globisporus [TaxId: 145 97.39
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 97.37
d1m8pa3183 ATP sulfurylase C-terminal domain {Fungus (Penicil 97.36
d1akya1180 Adenylate kinase {Baker's yeast (Saccharomyces cer 97.36
d1q3ta_223 CMP kinase {Streptococcus pneumoniae [TaxId: 1313] 97.34
d1vmaa2213 GTPase domain of the signal recognition particle r 97.29
g1f2t.1292 Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} 97.27
d1e4va1179 Adenylate kinase {Escherichia coli [TaxId: 562]} 97.24
d1l2ta_230 MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 97.23
d1x6va3195 Adenosine-5'phosphosulfate kinase (APS kinase) {Hu 97.23
d1nlfa_274 Hexameric replicative helicase repA {Escherichia c 97.2
d1r0wa_281 Cystic fibrosis transmembrane conductance regulato 97.18
d1g2912240 Maltose transport protein MalK, N-terminal domain 97.16
d1vpla_238 Putative ABC transporter TM0544 {Thermotoga mariti 97.03
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 97.01
d3dhwc1240 Methionine import ATP-binding protein MetN {Escher 97.0
d1szpa2251 DNA repair protein Rad51, catalytic domain {Baker' 96.99
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 96.95
d1m7ga_208 Adenosine-5'phosphosulfate kinase (APS kinase) {Fu 96.94
d1v43a3239 Hypothetical protein PH0022, N-terminal domain {Py 96.93
d1oxxk2242 Glucose transport protein GlcV, N-terminal domain 96.9
d2awna2232 Maltose transport protein MalK, N-terminal domain 96.89
d2fh5b1207 Signal recognition particle receptor beta-subunit 96.87
d3d31a2229 Sulfate/molybdate ABC transporter, ATP-binding pro 96.85
d1khta_190 Adenylate kinase {Archaeon Methanococcus voltae [T 96.82
d1sgwa_200 Putative ABC transporter PF0895 {Pyrococcus furios 96.78
d1g6ha_254 MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 96.64
d2onka1240 Molybdate/tungstate import ATP-binding protein Wtp 96.62
d1ji0a_240 Branched chain aminoacid ABC transporter {Thermoto 96.62
d1wb9a2234 DNA repair protein MutS, the C-terminal domain {Es 96.61
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 96.61
d1mv5a_242 Multidrug resistance ABC transporter LmrA, C-termi 96.59
d1lvga_190 Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 96.56
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 96.55
d1gkya_186 Guanylate kinase {Baker's yeast (Saccharomyces cer 96.55
d1uf9a_191 Dephospho-CoA kinase {Thermus thermophilus [TaxId: 96.53
d1rz3a_198 Hypothetical protein rbstp0775 {Bacillus stearothe 96.51
d1b0ua_258 ATP-binding subunit of the histidine permease {Sal 96.51
d1np6a_170 Molybdopterin-guanine dinucleotide biosynthesis pr 96.46
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 96.42
d1odfa_286 Hypothetical protein Ygr205W {Baker's yeast (Sacch 96.41
d1nksa_194 Adenylate kinase {Archaeon Sulfolobus acidocaldari 96.39
d1v5wa_258 Meiotic recombination protein DMC1/LIM15 homolog { 96.36
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 96.34
d1ewqa2224 DNA repair protein MutS, the C-terminal domain {Th 96.33
d1n0wa_242 DNA repair protein Rad51, catalytic domain {Human 96.22
d1pzna2254 DNA repair protein Rad51, catalytic domain {Archae 96.21
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 96.19
d1kgda_178 Guanylate kinase-like domain of Cask {Human (Homo 96.18
d1sq5a_308 Pantothenate kinase PanK {Escherichia coli [TaxId: 96.17
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 96.08
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 96.07
d1jjva_205 Dephospho-CoA kinase {Haemophilus influenzae [TaxI 96.05
d2p67a1327 LAO/AO transport system kinase ArgK {Escherichia c 96.05
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 95.98
d1l7vc_231 ABC transporter involved in vitamin B12 uptake, Bt 95.97
d1htwa_158 Hypothetical protein HI0065 {Haemophilus influenza 95.88
d1znwa1182 Guanylate kinase {Mycobacterium tuberculosis [TaxI 95.86
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 95.82
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 95.81
d2qm8a1323 Metallochaperone MeaB {Methylobacterium extorquens 95.81
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 95.79
d2f7sa1186 Rab27b {Human (Homo sapiens) [TaxId: 9606]} 95.75
d1uj2a_213 Uridine-cytidine kinase 2 {Human (Homo sapiens) [T 95.7
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 95.52
d1u0ja_267 Rep 40 protein helicase domain {Adeno-associated v 95.51
d2i1qa2258 DNA repair protein Rad51, catalytic domain {Archae 95.51
d1h65a_257 Chloroplast protein translocon GTPase Toc34 {Garde 95.46
d1zd9a1164 ADP-ribosylation factor {Human (Homo sapiens), ARL 95.44
d2gj8a1161 Probable tRNA modification GTPase TrmE (MnmE), G d 95.36
d1xjca_165 Molybdopterin-guanine dinucleotide biosynthesis pr 95.34
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 95.34
d1kkma_176 HPr kinase HprK C-terminal domain {Lactobacillus c 95.29
d1ctqa_166 cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 95.24
d1r8sa_160 ADP-ribosylation factor {Human (Homo sapiens), ARF 95.19
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 95.03
d1z0fa1166 Rab14 {Human (Homo sapiens) [TaxId: 9606]} 95.0
d1wf3a1178 GTPase Era, N-terminal domain {Thermus thermophilu 94.99
d1fzqa_176 ADP-ribosylation factor {Mouse (Mus musculus), ARL 94.96
d1a7ja_288 Phosphoribulokinase {Rhodobacter sphaeroides [TaxI 94.92
d1nn5a_209 Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 94.89
d2a5ja1173 Rab2b {Human (Homo sapiens) [TaxId: 9606]} 94.88
d1nrjb_209 Signal recognition particle receptor beta-subunit 94.81
d1s96a_205 Guanylate kinase {Escherichia coli [TaxId: 562]} 94.8
d1u8za_168 Ras-related protein RalA {Cotton-top tamarin (Sagu 94.74
d1knxa2177 HPr kinase HprK C-terminal domain {Mycoplasma pneu 94.64
d1ko7a2169 HPr kinase HprK C-terminal domain {Staphylococcus 94.6
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 94.58
d2bv3a2276 Elongation factor G (EF-G), N-terminal (G) domain 94.57
d2gjsa1168 Rad {Human (Homo sapiens) [TaxId: 9606]} 94.56
d1mkya1171 Probable GTPase Der, N-terminal and middle domains 94.37
d1e0sa_173 ADP-ribosylation factor {Human (Homo sapiens), ARF 94.22
d1z2aa1164 Rab23 {Mouse (Mus musculus) [TaxId: 10090]} 94.19
d2ew1a1171 Rab30 {Human (Homo sapiens) [TaxId: 9606]} 94.14
d1yrba1244 ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss 94.12
d1kaoa_167 Rap2a {Human (Homo sapiens) [TaxId: 9606]} 94.01
d1vhta_208 Dephospho-CoA kinase {Escherichia coli [TaxId: 562 93.77
d1e9ra_433 Bacterial conjugative coupling protein TrwB {Esche 93.71
d2bmea1174 Rab4a {Human (Homo sapiens) [TaxId: 9606]} 93.64
d1x3sa1177 Rab18 {Human (Homo sapiens) [TaxId: 9606]} 93.41
d2vp4a1197 Deoxyribonucleoside kinase {Fruit fly (Drosophila 93.28
d1f6ba_186 SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 93.18
d2ocpa1241 Deoxyguanosine kinase {Human (Homo sapiens) [TaxId 93.12
d2qtvb1166 SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 93.02
d1ksha_165 ADP-ribosylation factor {Mouse (Mus musculus), ARL 92.99
d1azta2221 Transducin (alpha subunit) {Cow (Bos taurus) [TaxI 92.85
d1upta_169 ADP-ribosylation factor {Human (Homo sapiens), ARL 92.7
d1wmsa_174 Rab9a {Human (Homo sapiens) [TaxId: 9606]} 92.61
d1p6xa_333 Thymidine kinase {Equine herpesvirus type 4 [TaxId 92.55
d1ihua1296 Arsenite-translocating ATPase ArsA {Escherichia co 92.54
d1gsia_208 Thymidylate kinase {Mycobacterium tuberculosis [Ta 92.49
d1xpua3289 Transcription termination factor Rho, ATPase domai 92.44
d2cxxa1184 GTP-binding protein engB {Pyrococcus horikoshii [T 92.42
d1zj6a1177 ADP-ribosylation factor {Human (Homo sapiens), ARL 92.24
d1lnza2185 Obg GTP-binding protein middle domain {Bacillus su 92.11
d2f9la1175 Rab11b {Human (Homo sapiens) [TaxId: 9606]} 92.03
d1svia_195 Probable GTPase EngB {Bacillus subtilis [TaxId: 14 92.02
d3raba_169 Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} 91.94
d1t9ha2231 Probable GTPase EngC (YjeQ), C-terminal domain {Ba 91.94
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 91.93
d4tmka_210 Thymidylate kinase {Escherichia coli [TaxId: 562]} 91.87
d1deka_241 Deoxynucleoside monophosphate kinase {Bacteriophag 91.81
d2atva1168 Ras-like estrogen-regulated growth inhibitor, RERG 91.69
d1tmka_214 Thymidylate kinase {Baker's yeast (Saccharomyces c 91.43
d1u0la2225 Probable GTPase EngC (YjeQ), C-terminal domain {Th 91.28
d1g16a_166 Rab-related protein Sec4 {Baker's yeast (Saccharom 91.22
d2erya1171 r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} 91.2
d1vg8a_184 Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} 91.13
d1ky3a_175 Rab-related protein ypt7p {Baker's yeast (Saccharo 91.11
d1r2qa_170 Rab5a {Human (Homo sapiens) [TaxId: 9606]} 91.09
d1t5la1 413 Nucleotide excision repair enzyme UvrB {Bacillus c 91.03
d1z08a1167 Rab21 {Human (Homo sapiens) [TaxId: 9606]} 91.0
d2erxa1171 di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} 90.84
d2fn4a1173 r-Ras {Human (Homo sapiens) [TaxId: 9606]} 90.82
d2g6ba1170 Rab26 {Human (Homo sapiens) [TaxId: 9606]} 90.61
d1xtqa1167 GTP-binding protein RheB {Human (Homo sapiens) [Ta 90.57
d1z06a1165 Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} 90.54
d2bcgy1194 GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi 90.39
d1kmqa_177 RhoA {Human (Homo sapiens) [TaxId: 9606]} 90.38
d1yzqa1164 Rab6 {Human (Homo sapiens) [TaxId: 9606]} 90.31
d1p5zb_241 Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 90.2
d2g3ya1172 GTP-binding protein GEM {Human (Homo sapiens) [Tax 89.84
d1ek0a_170 Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T 89.79
d1z0ja1167 Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} 89.71
d1c1ya_167 Rap1A {Human (Homo sapiens) [TaxId: 9606]} 89.69
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 89.68
g1xew.1329 Smc head domain {Pyrococcus furiosus [TaxId: 2261] 89.56
d1x1ra1169 Ras-related protein M-Ras (XRas) {Mouse (Mus muscu 89.55
d1m7ba_179 RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} 89.34
d1mh1a_183 Rac {Human (Homo sapiens) [TaxId: 9606]} 89.32
d1egaa1179 GTPase Era, N-terminal domain {Escherichia coli [T 89.29
d2ngra_191 CDC42 {Human (Homo sapiens) [TaxId: 9606]} 89.27
d2fu5c1173 Rab8a {Mouse (Mus musculus) [TaxId: 10090]} 89.24
d1mkya2186 Probable GTPase Der, N-terminal and middle domains 89.2
d2b8ta1139 Thymidine kinase, TK1, N-terminal domain {Ureaplas 89.01
d2atxa1185 RhoQ {Human (Homo sapiens) [TaxId: 9606]} 88.95
d1tq4a_400 Interferon-inducible GTPase {Mouse (Mus musculus) 88.93
g1ii8.1369 Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} 88.86
g1qhh.1623 DEXX box DNA helicase {Bacillus stearothermophilus 88.85
d1moza_182 ADP-ribosylation factor {Baker's yeast (Saccharomy 88.85
d1i2ma_170 Ran {Human (Homo sapiens) [TaxId: 9606]} 87.69
d1udxa2180 Obg GTP-binding protein middle domain {Thermus the 87.21
d2dy1a2267 Elongation factor G (EF-G), N-terminal (G) domain 86.97
d2jdid3276 Central domain of beta subunit of F1 ATP synthase 86.95
d1xzpa2160 TrmE GTPase domain {Thermotoga maritima [TaxId: 23 86.93
d1zcba2200 Transducin (alpha subunit) {Mouse (Mus musculus) [ 86.46
d1puia_188 Probable GTPase EngB {Escherichia coli [TaxId: 562 86.35
d1w1wa_427 Smc head domain {Baker's yeast (Saccharomyces cere 85.7
d1c4oa1 408 Nucleotide excision repair enzyme UvrB {Thermus th 85.59
d2bmja1175 Centaurin gamma 1, G domain {Human (Homo sapiens) 85.34
d1osna_331 Thymidine kinase {Varicella-zoster virus [TaxId: 1 85.3
d1goja_354 Kinesin {Neurospora crassa [TaxId: 5141]} 83.99
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 83.79
d1j3ba1318 Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo 83.03
d1nija1222 Hypothetical protein YjiA, N-terminal domain {Esch 83.0
d1bg2a_323 Kinesin {Human (Homo sapiens) [TaxId: 9606]} 82.98
d1ihua2279 Arsenite-translocating ATPase ArsA {Escherichia co 82.86
d1e2ka_329 Thymidine kinase {Herpes simplex virus type 1, dif 82.51
d1f9va_342 Kinesin motor Ncd (non-claret disjunctional) {Bake 82.36
d1sdma_364 Kinesin heavy chain-like protein {Potato (Solanum 81.67
d2bcjq2200 Transducin (alpha subunit) {Mouse (Mus musculus) [ 81.65
d1byia_224 Dethiobiotin synthetase {Escherichia coli [TaxId: 81.53
d1qhla_222 Cell division protein MukB {Escherichia coli [TaxI 81.21
d1e69a_308 Smc head domain {Thermotoga maritima [TaxId: 2336] 80.94
d2olra1313 Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo 80.2
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=379.01  Aligned_cols=254  Identities=62%  Similarity=0.954  Sum_probs=238.7

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHH
Q ss_conf             45788632134557737799999999981592688661899998049974899808999999997439986995202578
Q 006535          323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV  402 (641)
Q Consensus       323 ~~~~~~vtf~DI~G~~e~k~~L~eiv~~lk~p~~~~~lg~~~pkgVLL~GPPGTGKTlLAkAIA~elgvpfi~is~sel~  402 (641)
                      .++.+.+||+||+|++++|++|.+++.++++++.|.++|.++|+|+|||||||||||++|+++|.+++.|++.++++++.
T Consensus         3 ~~~~~~~t~~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l~   82 (256)
T d1lv7a_           3 TEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV   82 (256)
T ss_dssp             EECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSST
T ss_pred             CCCCCCCCHHHHHCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEHHHHH
T ss_conf             88899989999816399999999999998799999986999888678668998882289999999829987998869942


Q ss_pred             HHHHHCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf             88730114789999999985199639984121563203876422450689999999974213889999689999649999
Q 006535          403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD  482 (641)
Q Consensus       403 ~~~vG~~~~~ir~lF~~A~~~aP~IIfIDEIDaL~~~r~~~~~~~~~de~~~~LnqLL~eldg~~~~~~ViVIaATNrpd  482 (641)
                      +.|+|++++.++.+|+.|+.++||||||||+|.++..++... ...+++..+++++|+..||++..+.+++|||+||+|+
T Consensus        83 ~~~~g~~~~~l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~-~~~~~~~~~~~~~ll~~~d~~~~~~~v~vIatTn~~~  161 (256)
T d1lv7a_          83 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGL-GGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPD  161 (256)
T ss_dssp             TSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTS-CCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTT
T ss_pred             HCCHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCC-CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
T ss_conf             600107899999999999975998999977566575678988-8874899999999999953877779989998079931


Q ss_pred             CCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             99944318887663999328999999999999883279998777878889984899999999999999999987409962
Q 006535          483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV  562 (641)
Q Consensus       483 ~LD~ALlRpgRFdr~I~i~~Pd~~eR~~ILk~~l~~~~i~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eA~~~A~r~~~~~  562 (641)
                      .||++++||||||..|+|++|+.++|.+|++.++.+  .++..++++..+++.|.||+++||.++|++|.+.|.++++..
T Consensus       162 ~ld~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~--~~~~~~~~~~~la~~t~G~s~adi~~l~~~A~~~a~~~~~~~  239 (256)
T d1lv7a_         162 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR--VPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRV  239 (256)
T ss_dssp             TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT--SCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSS
T ss_pred             CCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHCCC--CCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             079857689878779877995999999999984259--986865699999986899899999999999999999828983


Q ss_pred             CCHHHHHHHHHHHHCCH
Q ss_conf             26988999999984122
Q 006535          563 VEKIDFIHAVERSIAGI  579 (641)
Q Consensus       563 It~~di~eAl~rvi~g~  579 (641)
                      |+.+||+.|+++++.|+
T Consensus       240 i~~~d~~~Al~rv~~g~  256 (256)
T d1lv7a_         240 VSMVEFEKAKDKIMMGL  256 (256)
T ss_dssp             BCHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHCCC
T ss_conf             48999999999996699
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} Back     information, alignment and structure
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Back     information, alignment and structure
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Back     information, alignment and structure
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Back     information, alignment and structure
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Back     information, alignment and structure
>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} Back     information, alignment and structure
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Back     information, alignment and structure
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} Back     information, alignment and structure
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Back     information, alignment and structure
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Back     information, alignment and structure
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Back     information, alignment and structure
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} Back     information, alignment and structure
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Back     information, alignment and structure
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Back     information, alignment and structure
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Back     information, alignment and structure
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} Back     information, alignment and structure
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Back     information, alignment and structure
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} Back     information, alignment and structure
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Back     information, alignment and structure
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} Back     information, alignment and structure
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} Back     information, alignment and structure
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} Back     information, alignment and structure
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Back     information, alignment and structure
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Back     information, alignment and structure
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure