Citrus Sinensis ID: 006540
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 641 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FHN8 | 1260 | Kinesin-like calmodulin-b | no | no | 0.602 | 0.306 | 0.388 | 6e-69 | |
| Q07970 | 793 | Kinesin-1 OS=Arabidopsis | no | no | 0.566 | 0.457 | 0.406 | 4e-68 | |
| F4JGP4 | 790 | Kinesin-5 OS=Arabidopsis | no | no | 0.566 | 0.459 | 0.404 | 7e-68 | |
| Q9BVG8 | 833 | Kinesin-like protein KIFC | no | no | 0.544 | 0.418 | 0.410 | 2e-67 | |
| P46864 | 745 | Kinesin-2 OS=Arabidopsis | no | no | 0.564 | 0.485 | 0.408 | 4e-67 | |
| O35231 | 824 | Kinesin-like protein KIFC | no | no | 0.558 | 0.434 | 0.417 | 1e-66 | |
| P46875 | 754 | Kinesin-3 OS=Arabidopsis | no | no | 0.570 | 0.485 | 0.396 | 2e-66 | |
| O81635 | 987 | Kinesin-4 OS=Arabidopsis | no | no | 0.519 | 0.337 | 0.415 | 2e-62 | |
| Q7XPJ0 | 1248 | Kinesin-like calmodulin-b | no | no | 0.547 | 0.281 | 0.397 | 3e-62 | |
| P45962 | 598 | Kinesin-like protein klp- | yes | no | 0.502 | 0.538 | 0.386 | 1e-59 |
| >sp|Q9FHN8|KCBP_ARATH Kinesin-like calmodulin-binding protein OS=Arabidopsis thaliana GN=KCBP PE=1 SV=1 | Back alignment and function desciption |
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Score = 262 bits (669), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 161/414 (38%), Positives = 241/414 (58%), Gaps = 28/414 (6%)
Query: 27 ESTLES--SDGLPPVPDLPDSPPLPLICTDVNVVPEQQKNELEQSIINLEG-EIVELRLK 83
EST+ES SD L +L + L + D++ +KNE +I+ ++G ++ EL +
Sbjct: 813 ESTIESKNSDMLLLQNNLKELEELREMKEDID-----RKNEQTAAILKMQGAQLAELEIL 867
Query: 84 KRRLDEKRREALNKILDIKGCIRVFCRVRSFLVTGRRVIHEPVLTELEKVVVRS---GGS 140
+ R+ N I D+KG IRV+CR+R + +LT +++ V
Sbjct: 868 YKEEQVLRKRYYNTIEDMKGKIRVYCRIRPLNEKESSEREKQMLTTVDEFTVEHPWKDDK 927
Query: 141 KKEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPG 200
+K+ +D+VF+ ASQ+D+F + + +++SA+DG+NVC+ AYGQTG+GKTFT+ G PG
Sbjct: 928 RKQHIYDRVFDMRASQDDIFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPG 987
Query: 201 IVPRALEELFRQAALDNSSSVTFSMS--MLEVYMGSVRDLLAPKPVFKAYEAATRCNLNI 258
+ PRA +ELF D S +FS+ M+E+Y ++ DLL PK +A R L I
Sbjct: 988 LTPRATKELFNILKRD-SKRFSFSLKAYMVELYQDTLVDLLLPK-------SARRLKLEI 1039
Query: 259 QTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRH 318
+ D+KG V +E +T + I + R +G R S TN+NE SSRSH ++ + I
Sbjct: 1040 KKDSKGMVFVENVTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVI--- 1096
Query: 319 GDALEAKTEVS---KLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRK 375
++++ +T+ + KL VDL GSERV K+G+ G L E ++IN SLSAL DVI AL
Sbjct: 1097 -ESIDLQTQSAARGKLSFVDLAGSERVKKSGSAGCQLKEAQSINKSLSALGDVIGALSSG 1155
Query: 376 RGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGI 429
H+PYRN KLT ++ DSLG +K LM V+ SP E ++ ET SL +A R R I
Sbjct: 1156 NQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTI 1209
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Minus-end microtubule-dependent motor protein involved in the regulation of cell division and trichome morphogenesis. Possesses basal and microtubule-stimulated ATPase activities. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q07970|ATK1_ARATH Kinesin-1 OS=Arabidopsis thaliana GN=ATK1 PE=2 SV=1 | Back alignment and function description |
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| >sp|F4JGP4|ATK5_ARATH Kinesin-5 OS=Arabidopsis thaliana GN=ATK5 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9BVG8|KIFC3_HUMAN Kinesin-like protein KIFC3 OS=Homo sapiens GN=KIFC3 PE=1 SV=4 | Back alignment and function description |
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| >sp|P46864|ATK2_ARATH Kinesin-2 OS=Arabidopsis thaliana GN=ATK2 PE=2 SV=1 | Back alignment and function description |
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| >sp|O35231|KIFC3_MOUSE Kinesin-like protein KIFC3 OS=Mus musculus GN=Kifc3 PE=1 SV=4 | Back alignment and function description |
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| >sp|P46875|ATK3_ARATH Kinesin-3 OS=Arabidopsis thaliana GN=ATK3 PE=2 SV=1 | Back alignment and function description |
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| >sp|O81635|ATK4_ARATH Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q7XPJ0|KCBP_ORYSJ Kinesin-like calmodulin-binding protein homolog OS=Oryza sativa subsp. japonica GN=Os04g0666900 PE=2 SV=1 | Back alignment and function description |
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| >sp|P45962|KLP3_CAEEL Kinesin-like protein klp-3 OS=Caenorhabditis elegans GN=klp-3 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 641 | ||||||
| 225451199 | 640 | PREDICTED: kinesin-like calmodulin-bindi | 0.996 | 0.998 | 0.724 | 0.0 | |
| 224123306 | 637 | predicted protein [Populus trichocarpa] | 0.990 | 0.996 | 0.667 | 0.0 | |
| 13536981 | 633 | BY-2 kinesin-like protein 5 [Nicotiana t | 0.987 | 1.0 | 0.639 | 0.0 | |
| 356533623 | 642 | PREDICTED: kinesin-1-like [Glycine max] | 0.937 | 0.936 | 0.662 | 0.0 | |
| 449435750 | 607 | PREDICTED: kinesin-like protein KIFC3-li | 0.928 | 0.980 | 0.675 | 0.0 | |
| 449485800 | 607 | PREDICTED: LOW QUALITY PROTEIN: kinesin- | 0.928 | 0.980 | 0.673 | 0.0 | |
| 356574910 | 639 | PREDICTED: kinesin-1-like [Glycine max] | 0.932 | 0.935 | 0.663 | 0.0 | |
| 297808815 | 625 | hypothetical protein ARALYDRAFT_489620 [ | 0.934 | 0.958 | 0.631 | 0.0 | |
| 30690873 | 625 | kinesin motor protein-like protein [Arab | 0.950 | 0.974 | 0.627 | 0.0 | |
| 255542412 | 499 | ATP binding protein, putative [Ricinus c | 0.776 | 0.997 | 0.706 | 0.0 |
| >gi|225451199|ref|XP_002274195.1| PREDICTED: kinesin-like calmodulin-binding protein [Vitis vinifera] gi|298204930|emb|CBI34237.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 900 bits (2327), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/642 (72%), Positives = 524/642 (81%), Gaps = 3/642 (0%)
Query: 1 MFISTENEQISMVLDKGPEPLKS-SPMESTLESSDGLPPVPDLPDSPPLPLICTDVNVVP 59
MF+STE EQIS+ L+ G E KS SP S +S +G P +L D P+P + TDV VVP
Sbjct: 1 MFVSTEKEQISLPLENGGESFKSTSPAGSYPDSLNGFPAGTELCDPVPVPALYTDVTVVP 60
Query: 60 EQQKNELEQSIINLEGEIVELRLKKRRLDEKRREALNKILDIKGCIRVFCRVRSFLVTGR 119
EQ+K ELEQ+I LEGEI LRL+ R LD RREALNKILDIKG IRVFCRVR L+T R
Sbjct: 61 EQEKQELEQTISTLEGEIAGLRLQHRSLDRTRREALNKILDIKGSIRVFCRVRPILLTDR 120
Query: 120 RVIHEPVLTELEKVVVRSGGSKKEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVL 179
R IH+P+ TELEK+VVRSGGS+KEF FDKVF Q ASQEDVFVEVEPILRSALDGHNVC+L
Sbjct: 121 RRIHQPISTELEKIVVRSGGSRKEFSFDKVFPQEASQEDVFVEVEPILRSALDGHNVCIL 180
Query: 180 AYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLL 239
AYGQTGTGKTFTMDGT+DQ GI PRAL +LF A+LD SSS TFSMSMLEVYMGS+RDLL
Sbjct: 181 AYGQTGTGKTFTMDGTNDQLGIAPRALVQLFHNASLDKSSSYTFSMSMLEVYMGSLRDLL 240
Query: 240 APKPVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTN 299
APK +AYE +RCNLNIQTD KG VEIEGL+EV I DFTKA WWY KGRRVRSTSWTN
Sbjct: 241 APKSFSRAYETISRCNLNIQTDPKGLVEIEGLSEVPISDFTKASWWYTKGRRVRSTSWTN 300
Query: 300 VNEASSRSHCLMRITIFRHGDALEAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAIN 359
VNEASSRSHCL RITIFR G A EAK EVSKLWMVDLGGSER+LKTGATGQTLDEGRAIN
Sbjct: 301 VNEASSRSHCLTRITIFRRGVASEAKAEVSKLWMVDLGGSERLLKTGATGQTLDEGRAIN 360
Query: 360 LSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICS 419
LSLSAL DVIAALRRKRGHVPYRNSKLTQIL+DSLGDGSK+LMLVH SP EED+GET S
Sbjct: 361 LSLSALGDVIAALRRKRGHVPYRNSKLTQILKDSLGDGSKILMLVHVSPFEEDIGETTYS 420
Query: 420 LSFAKRARGIESNRELSEDLKKRREIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKK 479
LSFAKRAR +ES +EL EDLKK++E R+A+LEE+MREAE ECQ VRNQI++ E LL+E K
Sbjct: 421 LSFAKRARAVESTKELPEDLKKQKEKRIAKLEEEMREAEEECQKVRNQIQKAEFLLNENK 480
Query: 480 KLFSAACQSLEDEEKSFVSPKENLKEAAETPKASKNVTKRSVSNSVPRFMTSTVASRQRK 539
+LFS+ Q EDE K+ SPK L + + + T+R SNS+PRFM STVASRQR
Sbjct: 481 RLFSSTYQPPEDEGKAPASPKGALVQVSRASLTFEKTTRRKFSNSMPRFMNSTVASRQRL 540
Query: 540 NAAEKEISIRARNLITGSRSSAQFSCSQSLSFLDIRFKAMIRCSNKKPRYGETNTPVAES 599
AAEKEI RA + TG+RSS QFS SQSLS+ D+RFK+++R SNKK RYGETNTP ES
Sbjct: 541 GAAEKEIDSRANSSRTGTRSSIQFSGSQSLSYSDLRFKSILR-SNKKSRYGETNTPAMES 599
Query: 600 PKGNGGLYSKTTSMPRNKVVTYSDPNLKVTLSRHRRRMSDFV 641
PK + L SKTTSMPR+K+VT S+PNL+VTLSRHRRRMSDF+
Sbjct: 600 PKCS-DLDSKTTSMPRSKIVTSSNPNLRVTLSRHRRRMSDFI 640
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224123306|ref|XP_002319046.1| predicted protein [Populus trichocarpa] gi|222857422|gb|EEE94969.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|13536981|dbj|BAB40709.1| BY-2 kinesin-like protein 5 [Nicotiana tabacum] | Back alignment and taxonomy information |
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| >gi|356533623|ref|XP_003535361.1| PREDICTED: kinesin-1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449435750|ref|XP_004135657.1| PREDICTED: kinesin-like protein KIFC3-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449485800|ref|XP_004157277.1| PREDICTED: LOW QUALITY PROTEIN: kinesin-like protein KIFC3-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356574910|ref|XP_003555586.1| PREDICTED: kinesin-1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|297808815|ref|XP_002872291.1| hypothetical protein ARALYDRAFT_489620 [Arabidopsis lyrata subsp. lyrata] gi|297318128|gb|EFH48550.1| hypothetical protein ARALYDRAFT_489620 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|30690873|ref|NP_198147.2| kinesin motor protein-like protein [Arabidopsis thaliana] gi|18087642|gb|AAL58950.1|AF462865_1 AT5g27950/F15F15_20 [Arabidopsis thaliana] gi|27363228|gb|AAO11533.1| At5g27950/F15F15_20 [Arabidopsis thaliana] gi|110742322|dbj|BAE99085.1| hypothetical protein [Arabidopsis thaliana] gi|332006367|gb|AED93750.1| kinesin motor protein-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|255542412|ref|XP_002512269.1| ATP binding protein, putative [Ricinus communis] gi|223548230|gb|EEF49721.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 641 | ||||||
| TAIR|locus:2143759 | 625 | AT5G27950 [Arabidopsis thalian | 0.915 | 0.939 | 0.586 | 1.1e-174 | |
| TAIR|locus:2193914 | 859 | AT1G55550 [Arabidopsis thalian | 0.677 | 0.505 | 0.428 | 9.3e-91 | |
| TAIR|locus:2136437 | 745 | ATK2 "kinesin 2" [Arabidopsis | 0.574 | 0.493 | 0.395 | 3.3e-63 | |
| TAIR|locus:2115713 | 790 | ATK5 "kinesin 5" [Arabidopsis | 0.521 | 0.422 | 0.426 | 1.3e-61 | |
| UNIPROTKB|B7Z484 | 848 | KIFC3 "cDNA FLJ56036, highly s | 0.510 | 0.385 | 0.428 | 4.3e-61 | |
| UNIPROTKB|F5H3M2 | 724 | KIFC3 "Kinesin-like protein KI | 0.510 | 0.451 | 0.428 | 4.3e-61 | |
| UNIPROTKB|F5H4I9 | 768 | KIFC3 "Kinesin-like protein KI | 0.510 | 0.425 | 0.428 | 4.3e-61 | |
| UNIPROTKB|Q9BVG8 | 833 | KIFC3 "Kinesin-like protein KI | 0.510 | 0.392 | 0.428 | 4.3e-61 | |
| UNIPROTKB|E1BFA7 | 833 | LOC539231 "Uncharacterized pro | 0.510 | 0.392 | 0.428 | 7.1e-61 | |
| UNIPROTKB|E2QS65 | 764 | KIFC3 "Uncharacterized protein | 0.510 | 0.428 | 0.431 | 7.1e-61 |
| TAIR|locus:2143759 AT5G27950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1697 (602.4 bits), Expect = 1.1e-174, P = 1.1e-174
Identities = 351/598 (58%), Positives = 426/598 (71%)
Query: 51 ICTDVNVVPEQQKNELEQSIINLEGEIVXXXXXXXXXXXXXXXALNKILDIKGCIRVFCR 110
+ TDVNVVPE + N+LE+SI NLE E+ LNKI+D KG IRVFCR
Sbjct: 26 VYTDVNVVPEHESNQLEKSISNLEEEVFELKLKLKSLDEKRKQVLNKIIDTKGSIRVFCR 85
Query: 111 VRSFLVTGRRVIHEPVLTELEKVVVRSGGSKKEFGFDKVFNQAASQEDVFVEVEPILRSA 170
VR FL+T RR I EPV + VV+RS GS KEF FDKVF+Q+A+QE+VF EV+PILRSA
Sbjct: 86 VRPFLLTERRPIREPVSFGPDNVVIRSAGSSKEFEFDKVFHQSATQEEVFGEVKPILRSA 145
Query: 171 LDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDNSSSVTFSMSMLEV 230
LDGHNVCVLAYGQTGTGKTFTMDGTS+QPG+ PRA++ELF +A++D + SVTF MSMLE+
Sbjct: 146 LDGHNVCVLAYGQTGTGKTFTMDGTSEQPGLAPRAIKELFNEASMDQTHSVTFRMSMLEI 205
Query: 231 YMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGR 290
YMG+++DLL+ + K+YEA+ +CNLNIQ D+KG+VEIEGLTEV++ DFTKARWWYNKGR
Sbjct: 206 YMGNLKDLLSARQSLKSYEASAKCNLNIQVDSKGSVEIEGLTEVEVMDFTKARWWYNKGR 265
Query: 291 RVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWMVDLGGSERVLKTGATGQ 350
RVRSTSWTNVNE SSRSHCL RITIFR GDA+ +KTEVSKLWM+DLGGSER+LKTGA GQ
Sbjct: 266 RVRSTSWTNVNETSSRSHCLTRITIFRRGDAVGSKTEVSKLWMIDLGGSERLLKTGAIGQ 325
Query: 351 TLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCE 410
T+DEGRAINLSLSAL DVIAALRRK+GHVPYRNSKLTQIL+DSLG SKVLMLVH SP +
Sbjct: 326 TMDEGRAINLSLSALGDVIAALRRKKGHVPYRNSKLTQILKDSLGTRSKVLMLVHISPRD 385
Query: 411 EDVGETICSLSFAKRARGIESNRELSEDLKKRREIXXXXXXXXXXXXXXXCQNVRNQIXX 470
EDVGETICSLSF KRAR +ESNR L+ +L+K RE C+ ++ ++
Sbjct: 386 EDVGETICSLSFTKRARAVESNRGLTAELQKLREKKISELEEEMEETQEGCKKIKARLQE 445
Query: 471 XXXXXXXXXXXXXAACQS-LEDEEKSFVSPKENLKEAAETPKASKNVTK-RSVSNSVPRF 528
LED EK +SP ++LK+ TP +S + K R S VPRF
Sbjct: 446 VECLVNEHKKLFWITNDKYLEDIEKKAISPLDHLKDTDATPISSDKLVKIRKSSGFVPRF 505
Query: 529 MTSTVASRQRKNAAEKEISIRARNLITGXXXXXXXXXXXXXXXXDIRFKAMIRCSNKKPR 588
MTSTVASRQR+ +EKEI+ +A+++ + D R KA++R S KP
Sbjct: 506 MTSTVASRQRQTMSEKEINAKAQSIRSVAKNLTQFSTSQSLSLSDSRSKALLRRSYTKPL 565
Query: 589 YGETN--TPVAESPKGN---GGLYSKT---TSMPRNKVVTYSDPNLKVTLSRHRRRMS 638
N TP E+PK + L K TS PR+K+VT SDPN++ L H+RRMS
Sbjct: 566 QAAANSGTP-PETPKRHIKDNSLQRKNMNDTSSPRSKMVTSSDPNVRAKLCHHKRRMS 622
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| TAIR|locus:2193914 AT1G55550 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2136437 ATK2 "kinesin 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2115713 ATK5 "kinesin 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B7Z484 KIFC3 "cDNA FLJ56036, highly similar to Homo sapiens kinesin family member C3 (KIFC3), mRNA" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F5H3M2 KIFC3 "Kinesin-like protein KIFC3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F5H4I9 KIFC3 "Kinesin-like protein KIFC3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9BVG8 KIFC3 "Kinesin-like protein KIFC3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BFA7 LOC539231 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2QS65 KIFC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 641 | |||
| cd01366 | 329 | cd01366, KISc_C_terminal, Kinesin motor domain, KI | 1e-153 | |
| pfam00225 | 326 | pfam00225, Kinesin, Kinesin motor domain | 1e-121 | |
| smart00129 | 335 | smart00129, KISc, Kinesin motor, catalytic domain | 1e-109 | |
| cd00106 | 328 | cd00106, KISc, Kinesin motor domain | 1e-106 | |
| cd01369 | 325 | cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine | 1e-84 | |
| cd01372 | 341 | cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik | 1e-79 | |
| cd01371 | 333 | cd01371, KISc_KIF3, Kinesin motor domain, kinesins | 3e-74 | |
| cd01370 | 338 | cd01370, KISc_KIP3_like, Kinesin motor domain, KIP | 1e-73 | |
| cd01365 | 356 | cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K | 1e-72 | |
| cd01375 | 334 | cd01375, KISc_KIF9_like, Kinesin motor domain, KIF | 3e-70 | |
| cd01367 | 322 | cd01367, KISc_KIF2_like, Kinesin motor domain, KIF | 8e-66 | |
| cd01374 | 321 | cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E | 2e-65 | |
| cd01364 | 352 | cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC | 1e-64 | |
| cd01376 | 319 | cd01376, KISc_KID_like, Kinesin motor domain, KIF2 | 4e-63 | |
| COG5059 | 568 | COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | 2e-59 | |
| cd01368 | 345 | cd01368, KISc_KIF23_like, Kinesin motor domain, KI | 2e-55 | |
| cd01373 | 337 | cd01373, KISc_KLP2_like, Kinesin motor domain, KLP | 5e-55 | |
| PLN03188 | 1320 | PLN03188, PLN03188, kinesin-12 family protein; Pro | 3e-41 | |
| cd01363 | 186 | cd01363, Motor_domain, Myosin and Kinesin motor do | 1e-28 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.004 |
| >gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
Score = 444 bits (1145), Expect = e-153
Identities = 164/335 (48%), Positives = 212/335 (63%), Gaps = 14/335 (4%)
Query: 102 KGCIRVFCRVRSFLVTGRR----VIHEPVLTELEKVVVRSGGSKKEFGFDKVFNQAASQE 157
KG IRVFCRVR L + VI P + + G KK F FD+VF+ ASQE
Sbjct: 1 KGNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQE 60
Query: 158 DVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDN 217
DVF EV P+++SALDG+NVC+ AYGQTG+GKT+TM+G + PGI+PRALE+LF A
Sbjct: 61 DVFEEVSPLVQSALDGYNVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELK 120
Query: 218 SSSVTFSM--SMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQ 275
++++ SMLE+Y ++RDLLA KP A + L I+ D+KG + LTEV
Sbjct: 121 EKGWSYTITASMLEIYNETIRDLLATKP-------APKKKLEIKHDSKGETYVTNLTEVP 173
Query: 276 IPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWMVD 335
+ + N G + RS + TN+NE SSRSH + ++ I +T KL +VD
Sbjct: 174 VSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQT-RGKLNLVD 232
Query: 336 LGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLG 395
L GSER+ K+GATG L E +AIN SLSAL DVI+ALR K HVPYRNSKLT +L+DSLG
Sbjct: 233 LAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLG 292
Query: 396 DGSKVLMLVHASPCEEDVGETICSLSFAKRARGIE 430
SK LM V+ SP E ++ ET+CSL FA R R +E
Sbjct: 293 GNSKTLMFVNISPLESNLSETLCSLRFASRVRSVE 327
|
Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 329 |
| >gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|238054 cd00106, KISc, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
| >gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 641 | |||
| KOG0245 | 1221 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG4280 | 574 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0243 | 1041 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0239 | 670 | consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | 100.0 | |
| PLN03188 | 1320 | kinesin-12 family protein; Provisional | 100.0 | |
| KOG0240 | 607 | consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | 100.0 | |
| cd01370 | 338 | KISc_KIP3_like Kinesin motor domain, KIP3-like sub | 100.0 | |
| cd01373 | 337 | KISc_KLP2_like Kinesin motor domain, KLP2-like sub | 100.0 | |
| KOG0242 | 675 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01368 | 345 | KISc_KIF23_like Kinesin motor domain, KIF23-like s | 100.0 | |
| KOG0241 | 1714 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01365 | 356 | KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p | 100.0 | |
| cd01367 | 322 | KISc_KIF2_like Kinesin motor domain, KIF2-like gro | 100.0 | |
| cd01376 | 319 | KISc_KID_like Kinesin motor domain, KIF22/Kid-like | 100.0 | |
| cd01374 | 321 | KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like | 100.0 | |
| cd01364 | 352 | KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind | 100.0 | |
| cd01369 | 325 | KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy | 100.0 | |
| cd01366 | 329 | KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ | 100.0 | |
| cd01371 | 333 | KISc_KIF3 Kinesin motor domain, kinesins II or KIF | 100.0 | |
| cd01372 | 341 | KISc_KIF4 Kinesin motor domain, KIF4-like subfamil | 100.0 | |
| cd01375 | 334 | KISc_KIF9_like Kinesin motor domain, KIF9-like sub | 100.0 | |
| smart00129 | 335 | KISc Kinesin motor, catalytic domain. ATPase. Micr | 100.0 | |
| cd00106 | 328 | KISc Kinesin motor domain. This catalytic (head) d | 100.0 | |
| PF00225 | 335 | Kinesin: Kinesin motor domain; InterPro: IPR001752 | 100.0 | |
| KOG0247 | 809 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0246 | 676 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0244 | 913 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01363 | 186 | Motor_domain Myosin and Kinesin motor domain. Thes | 100.0 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 99.06 | |
| KOG0239 | 670 | consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | 95.46 | |
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 94.06 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 93.43 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 93.4 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 92.23 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 91.67 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 91.43 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 91.22 | |
| PRK06620 | 214 | hypothetical protein; Validated | 90.93 | |
| PRK12377 | 248 | putative replication protein; Provisional | 90.74 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 90.63 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 90.55 | |
| PRK08116 | 268 | hypothetical protein; Validated | 89.81 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 89.44 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 89.27 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 89.19 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 89.0 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 88.8 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 88.15 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 88.0 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 87.98 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 87.9 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 87.88 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 87.48 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 87.25 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 86.61 | |
| PTZ00361 | 438 | 26 proteosome regulatory subunit 4-like protein; P | 86.49 | |
| PRK09087 | 226 | hypothetical protein; Validated | 86.4 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 86.12 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 85.37 | |
| PRK06526 | 254 | transposase; Provisional | 84.92 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 84.5 | |
| PRK08727 | 233 | hypothetical protein; Validated | 83.82 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 83.54 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 82.69 | |
| PRK08181 | 269 | transposase; Validated | 82.49 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 82.15 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 81.86 | |
| PRK10436 | 462 | hypothetical protein; Provisional | 81.58 | |
| TIGR02538 | 564 | type_IV_pilB type IV-A pilus assembly ATPase PilB. | 80.88 | |
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 80.72 | |
| TIGR02533 | 486 | type_II_gspE general secretory pathway protein E. | 80.5 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 80.45 |
| >KOG0245 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-90 Score=779.69 Aligned_cols=458 Identities=31% Similarity=0.475 Sum_probs=374.8
Q ss_pred CCEEEEEEeCCCCcccC-CcccCcEEecCCEEEEEeCC-c--eEEEEeceeecC-------CCCchhhHhhh-HHHHHHh
Q 006540 103 GCIRVFCRVRSFLVTGR-RVIHEPVLTELEKVVVRSGG-S--KKEFGFDKVFNQ-------AASQEDVFVEV-EPILRSA 170 (641)
Q Consensus 103 G~IrV~~RvRP~~~~e~-~~~~~~v~~~~~~v~v~~~~-~--~~~F~FD~VF~~-------~atQ~eVf~~v-~plV~~v 170 (641)
.+|.|.|||||++.-|. ....+++.+.+++.++.... . ...|+||+.||. .++|..||+++ .++|+.+
T Consensus 4 ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~A 83 (1221)
T KOG0245|consen 4 SSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDHA 83 (1221)
T ss_pred CceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHHH
Confidence 47999999999998664 34566777777777776433 2 266999999984 47899999998 9999999
Q ss_pred hcCcceeEEecccCCCCcceeecCCC--CCCCchhHHHHHHHHHHhcC--CCceEEEEEeEEEEecceeeecCC-CCCcc
Q 006540 171 LDGHNVCVLAYGQTGTGKTFTMDGTS--DQPGIVPRALEELFRQAALD--NSSSVTFSMSMLEVYMGSVRDLLA-PKPVF 245 (641)
Q Consensus 171 l~G~N~~IfAYGqTGSGKTyTM~G~~--~~~GIIpRal~~LF~~~~~~--~~~~~~v~vS~lEIYnE~V~DLL~-~~~~~ 245 (641)
++|||+||||||||||||||||+|.. +++|||||+|++||.++... .+..|.|.|||+|||||+|+|||+ |.+
T Consensus 84 fEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~~-- 161 (1221)
T KOG0245|consen 84 FEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPKS-- 161 (1221)
T ss_pred hcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCCC--
Confidence 99999999999999999999999987 89999999999999987643 478999999999999999999998 433
Q ss_pred chhhhhcccceeeEeCCCCCeEecCcEEEEcCChHHHHHHHHHhhhhccccccCCCCCCCCceEEEEEEEEEecCCCC--
Q 006540 246 KAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALE-- 323 (641)
Q Consensus 246 ~~~~~~~~~~L~i~ed~~g~v~V~glt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~-- 323 (641)
+.+|++|+++.-|+||++|+.+.|+|+.|+..||+.|++.|++|+|+||+.|||||+||+|.+.+......
T Consensus 162 -------kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~ 234 (1221)
T KOG0245|consen 162 -------KGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTG 234 (1221)
T ss_pred -------CCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCC
Confidence 45799999999999999999999999999999999999999999999999999999999999988643322
Q ss_pred -CceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHHHHHHHHHHHHHHhCC-------CCccCCCCccchhhhcccC
Q 006540 324 -AKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKR-------GHVPYRNSKLTQILRDSLG 395 (641)
Q Consensus 324 -~~~~~skL~lVDLAGSEr~~kt~a~g~rlkE~~~INkSL~aLg~VI~aL~~~~-------~hIPYRdSKLT~LLqdsLg 395 (641)
....+|+|+|||||||||+..+|+.|+|||||.+|||||.+||.||+||++.+ .+||||||.|||||+++||
T Consensus 235 l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLG 314 (1221)
T KOG0245|consen 235 LDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLG 314 (1221)
T ss_pred CcceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcC
Confidence 36788999999999999999999999999999999999999999999997533 4899999999999999999
Q ss_pred CCcccceEEecCCCCCCHHHhHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHH----------------
Q 006540 396 DGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNRELSEDLKKRREIRMAELEEDMREAEA---------------- 459 (641)
Q Consensus 396 GnskT~mI~~VSP~~~~~~ETlsTLrFA~rar~I~~~~~~~~~~~~~~~~~i~~L~~el~~l~~---------------- 459 (641)
|||||+||+++||++.||+|||+|||||.|||+|++++.+|+|++. +.|.+|++|+..|+.
T Consensus 315 GNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpna---KLIRELreEv~rLksll~~~~~~~~~~~~~p 391 (1221)
T KOG0245|consen 315 GNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNA---KLIRELREEVARLKSLLRAQGLGDIAVEGSP 391 (1221)
T ss_pred CcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccH---HHHHHHHHHHHHHHHHHhccccccccccCCc
Confidence 9999999999999999999999999999999999999999999876 357777777776654
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHh-----------hccC--C--CchhhHHHhhcCcccccccc
Q 006540 460 -------ECQNVRNQIKEVESLLSEKKKLFSAACQSLEDE-----------EKSF--V--SPKENLKEAAETPKASKNVT 517 (641)
Q Consensus 460 -------e~~~l~~qi~~~e~~~~E~~~~~~~~~~~l~~e-----------~~~~--~--~~~~~l~~~~~~~~~~~~~~ 517 (641)
++..+++++++-|..+.|+.+.|++.....++- +.++ + ....+|.++++||..++..+
T Consensus 392 ~~~~~~~~~e~~~~~L~E~Ek~mael~etW~EKl~~aEair~e~~~~L~emGva~~~D~~kk~phLVNLneDPllSe~Ll 471 (1221)
T KOG0245|consen 392 SALLSQPEIEELRERLQETEKIMAELNETWEEKLREAEAIRMEREALLAEMGVAVREDGGKKTPHLVNLNEDPLLSECLL 471 (1221)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCceeeecCCccCcceeccCCCchhhccEE
Confidence 366778888888888888777776544332211 1111 2 24579999999999988766
Q ss_pred c----------cccCCCCCcccchhhHhHhhhhhhhhh-----------------hhccc----ccccccccccCCCCcc
Q 006540 518 K----------RSVSNSVPRFMTSTVASRQRKNAAEKE-----------------ISIRA----RNLITGSRSSAQFSCS 566 (641)
Q Consensus 518 ~----------r~~~~~~p~~~~~~~~s~~~~~~~e~e-----------------~~~~~----~~~~~~~~~~~~~~~~ 566 (641)
. |...++-|.+..+...-+.-|=..+.+ |..+. .-++++ .-+.++|.
T Consensus 472 Y~ikeG~TrVG~~~a~~~~DI~LsG~~I~~qHC~i~~~~g~~~vtl~p~e~aetyVNGk~v~ep~qL~~G--dRiilG~~ 549 (1221)
T KOG0245|consen 472 YYIKEGETRVGREDASSRQDIVLSGQLIREQHCSIRNEGGNDVVTLEPCEDAETYVNGKLVTEPTQLRSG--DRIILGGN 549 (1221)
T ss_pred EEeccCceecCCCCcccCCceEecchhhhhhceEEEecCCCceEEeccCCccceeEccEEcCCcceeccC--CEEEEcCc
Confidence 5 334466666555554444433221111 11121 122333 33678888
Q ss_pred cccchhhh
Q 006540 567 QSLSFLDI 574 (641)
Q Consensus 567 ~~~~~~~~ 574 (641)
-.|.|.+-
T Consensus 550 H~frfn~P 557 (1221)
T KOG0245|consen 550 HVFRFNHP 557 (1221)
T ss_pred eeEEecCH
Confidence 88888775
|
|
| >KOG4280 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0243 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >PLN03188 kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >KOG0242 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >KOG0241 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
| >cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
| >cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >smart00129 KISc Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >cd00106 KISc Kinesin motor domain | Back alignment and domain information |
|---|
| >PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport | Back alignment and domain information |
|---|
| >KOG0247 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0246 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0244 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01363 Motor_domain Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
| >PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
| >PRK10436 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB | Back alignment and domain information |
|---|
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
| >TIGR02533 type_II_gspE general secretory pathway protein E | Back alignment and domain information |
|---|
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 641 | ||||
| 3h4s_A | 386 | Structure Of The Complex Of A Mitotic Kinesin With | 1e-67 | ||
| 1sdm_A | 369 | Crystal Structure Of Kinesin-Like Calmodulin Bindin | 9e-66 | ||
| 2h58_A | 330 | Crystal Structure Of The Kifc3 Motor Domain In Comp | 4e-65 | ||
| 1goj_A | 355 | Structure Of A Fast Kinesin: Implications For Atpas | 5e-54 | ||
| 2ncd_A | 420 | Ncd (Non-Claret Disjunctional) Dimer From D. Melano | 2e-52 | ||
| 1cz7_A | 406 | The Crystal Structure Of A Minus-End Directed Micro | 2e-52 | ||
| 3gbj_A | 354 | Crystal Structure Of The Motor Domain Of Kinesin Ki | 3e-52 | ||
| 3l1c_A | 383 | Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | 9e-52 | ||
| 1n6m_A | 409 | Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY | 1e-51 | ||
| 3u06_A | 412 | Crystal Structure Of The Kinesin-14 Ncdg347d Length | 2e-51 | ||
| 4a14_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 1e-49 | ||
| 2vvg_A | 350 | Crystal Structure Of The G.Intestinalis Kinesin 2 G | 2e-49 | ||
| 1bg2_A | 325 | Human Ubiquitous Kinesin Motor Domain Length = 325 | 3e-49 | ||
| 1mkj_A | 349 | Human Kinesin Motor Domain With Docked Neck Linker | 4e-49 | ||
| 3b6u_A | 372 | Crystal Structure Of The Motor Domain Of Human Kine | 7e-49 | ||
| 4atx_C | 340 | Rigor Kinesin Motor Domain With An Ordered Neck-Lin | 2e-48 | ||
| 4h1g_A | 715 | Structure Of Candida Albicans Kar3 Motor Domain Fus | 2e-48 | ||
| 2xt3_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 6e-48 | ||
| 4aqv_C | 373 | Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma | 1e-47 | ||
| 2y5w_A | 365 | Crystal Structure Of Drosophila Melanogaster Kinesi | 2e-47 | ||
| 3b6v_A | 395 | Crystal Structure Of The Motor Domain Of Human Kine | 8e-47 | ||
| 3hqd_A | 369 | Human Kinesin Eg5 Motor Domain In Complex With Ampp | 1e-46 | ||
| 4a28_A | 368 | Eg5-2 Length = 368 | 3e-46 | ||
| 1q0b_A | 367 | Crystal Structure Of The Motor Protein Ksp In Compl | 3e-46 | ||
| 1ii6_A | 368 | Crystal Structure Of The Mitotic Kinesin Eg5 In Com | 4e-46 | ||
| 4ap0_A | 370 | The Mitotic Kinesin Eg5 In Complex With Mg-Adp And | 4e-46 | ||
| 1x88_A | 359 | Human Eg5 Motor Domain Bound To Mg-Adp And Monastro | 5e-46 | ||
| 4a1z_A | 368 | Eg5-1 Length = 368 | 6e-46 | ||
| 3bfn_A | 388 | Crystal Structure Of The Motor Domain Of Human Kine | 1e-45 | ||
| 3zcw_A | 348 | Eg5 - New Allosteric Binding Site Length = 348 | 1e-45 | ||
| 2rep_A | 376 | Crystal Structure Of The Motor Domain Of Human Kine | 4e-45 | ||
| 3lre_A | 355 | Crystal Structure Analysis Of Human Kinesin-8 Motor | 7e-45 | ||
| 1i5s_A | 367 | Crystal Structure Of The Kif1a Motor Domain Complex | 8e-44 | ||
| 2owm_A | 443 | Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3 | 8e-44 | ||
| 1i6i_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 9e-44 | ||
| 4gkr_A | 371 | Structure Of The C-Terminal Motor Domain Of Kar3 Fr | 1e-43 | ||
| 1ia0_K | 394 | Kif1a Head-Microtubule Complex Structure In Atp-For | 1e-43 | ||
| 1vfv_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 2e-43 | ||
| 3t0q_A | 349 | Motor Domain Structure Of The Kar3-Like Kinesin Fro | 3e-43 | ||
| 2wbe_C | 373 | Kinesin-5-Tubulin Complex With Amppnp Length = 373 | 8e-43 | ||
| 1f9t_A | 358 | Crystal Structures Of Kinesin Mutants Reveal A Sign | 1e-42 | ||
| 1t5c_A | 349 | Crystal Structure Of The Motor Domain Of Human Kine | 1e-41 | ||
| 4etp_A | 403 | C-Terminal Motor And Motor Homology Domain Of Kar3v | 2e-41 | ||
| 3kar_A | 346 | The Motor Domain Of Kinesin-Like Protein Kar3, A Sa | 2e-41 | ||
| 1f9w_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 5e-41 | ||
| 1f9u_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 6e-41 | ||
| 1f9v_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 7e-41 | ||
| 3nwn_A | 359 | Crystal Structure Of The Human Kif9 Motor Domain In | 7e-39 | ||
| 3pxn_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 9e-32 | ||
| 3dc4_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 9e-32 | ||
| 1v8j_A | 410 | The Crystal Structure Of The Minimal Functional Dom | 3e-31 | ||
| 3edl_D | 331 | Kinesin13-Microtubule Ring Complex Length = 331 | 4e-31 | ||
| 2gry_A | 420 | Crystal Structure Of The Human Kif2 Motor Domain In | 3e-30 | ||
| 2heh_A | 387 | Crystal Structure Of The Kif2c Motor Domain (Casp T | 1e-29 | ||
| 1ry6_A | 360 | Crystal Structure Of Internal Kinesin Motor Domain | 8e-28 | ||
| 2kin_A | 238 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 4e-25 | ||
| 3kin_B | 117 | Kinesin (Dimeric) From Rattus Norvegicus Length = 1 | 8e-10 | ||
| 2kin_B | 100 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 1e-09 |
| >pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386 | Back alignment and structure |
|
| >pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369 | Back alignment and structure |
| >pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330 | Back alignment and structure |
| >pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355 | Back alignment and structure |
| >pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420 | Back alignment and structure |
| >pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406 | Back alignment and structure |
| >pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354 | Back alignment and structure |
| >pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | Back alignment and structure |
| >pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409 | Back alignment and structure |
| >pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412 | Back alignment and structure |
| >pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350 | Back alignment and structure |
| >pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325 | Back alignment and structure |
| >pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349 | Back alignment and structure |
| >pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372 | Back alignment and structure |
| >pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340 | Back alignment and structure |
| >pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715 | Back alignment and structure |
| >pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373 | Back alignment and structure |
| >pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365 | Back alignment and structure |
| >pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395 | Back alignment and structure |
| >pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369 | Back alignment and structure |
| >pdb|4A28|A Chain A, Eg5-2 Length = 368 | Back alignment and structure |
| >pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367 | Back alignment and structure |
| >pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368 | Back alignment and structure |
| >pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370 | Back alignment and structure |
| >pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359 | Back alignment and structure |
| >pdb|4A1Z|A Chain A, Eg5-1 Length = 368 | Back alignment and structure |
| >pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388 | Back alignment and structure |
| >pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348 | Back alignment and structure |
| >pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376 | Back alignment and structure |
| >pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355 | Back alignment and structure |
| >pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367 | Back alignment and structure |
| >pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443 | Back alignment and structure |
| >pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366 | Back alignment and structure |
| >pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371 | Back alignment and structure |
| >pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394 | Back alignment and structure |
| >pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366 | Back alignment and structure |
| >pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349 | Back alignment and structure |
| >pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373 | Back alignment and structure |
| >pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358 | Back alignment and structure |
| >pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349 | Back alignment and structure |
| >pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403 | Back alignment and structure |
| >pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346 | Back alignment and structure |
| >pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359 | Back alignment and structure |
| >pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344 | Back alignment and structure |
| >pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344 | Back alignment and structure |
| >pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410 | Back alignment and structure |
| >pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331 | Back alignment and structure |
| >pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420 | Back alignment and structure |
| >pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387 | Back alignment and structure |
| >pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360 | Back alignment and structure |
| >pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238 | Back alignment and structure |
| >pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus Length = 117 | Back alignment and structure |
| >pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus Length = 100 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412 | Back alignment and structure |
|---|
Score = 433 bits (1117), Expect = e-148
Identities = 123/404 (30%), Positives = 204/404 (50%), Gaps = 28/404 (6%)
Query: 60 EQQKNELEQSIINLEGEIVELRLKKRRLDEKRREALNKILDIKGCIRVFCRVRSFLVTGR 119
Q+ EL + E+ + + + + +R+E N ++D++ IRVFCR+R L +
Sbjct: 16 RQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIRVFCRIRPPLESEE 75
Query: 120 RVIHEPVLTELEKVV--------VRSGGSKKEFGFDKVFNQAASQEDVFVEVEPILRSAL 171
+ E V +S ++ F FD+VF+ +SQ D+F V P+++SAL
Sbjct: 76 NRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSAL 135
Query: 172 DGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDNSSSVTFSM--SMLE 229
DG+N+C+ AYGQTG+GKT+TMDG + G++PR ++ LF + + + + LE
Sbjct: 136 DGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLE 195
Query: 230 VYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKG 289
+Y + DLL+ + + + + K + + +TE + D R +
Sbjct: 196 IYNEVLYDLLSNEQ--------KDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTA 247
Query: 290 RRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWMVDLGGSERVLKTGATG 349
+ R+T+ T NE SSRSH + ++ + A + + V + +VDL GSE T
Sbjct: 248 KMNRATASTAGNERSSRSHAVTKLELIGR-HAEKQEISVGSINLVDLAGSES----PKTS 302
Query: 350 QTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPC 409
+ E + IN SLS L +VI AL +K+ H+PYRNSKLT +L SLG SK LM ++ SP
Sbjct: 303 TRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPF 362
Query: 410 EEDVGETICSLSFAKRARGIESNRELSEDLKKRREIRMAELEED 453
++ E++ SL FA + + K+ R + +
Sbjct: 363 QDCFQESVKSLRFAASVNSCKMTKA-----KRNRYLNNSVANSS 401
|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403 | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369 | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376 | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347 | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349 | Back alignment and structure |
|---|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388 | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325 | Back alignment and structure |
|---|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365 | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355 | Back alignment and structure |
|---|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350 | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372 | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355 | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344 | Back alignment and structure |
|---|
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349 | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354 | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359 | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344 | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373 | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360 | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366 | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443 | Back alignment and structure |
|---|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387 | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410 | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Length = 117 | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Length = 100 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} PDB: 1u0i_A Length = 333 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 641 | ||||
| d1bg2a_ | 323 | c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId | 1e-74 | |
| d2ncda_ | 368 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 1e-73 | |
| d1f9va_ | 342 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 3e-70 | |
| d1x88a1 | 345 | c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), | 7e-70 | |
| d1goja_ | 354 | c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5 | 2e-68 | |
| d1ry6a_ | 330 | c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu | 2e-68 | |
| d1sdma_ | 364 | c.37.1.9 (A:) Kinesin heavy chain-like protein {Po | 4e-67 | |
| d2zfia1 | 349 | c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), | 6e-65 | |
| d1v8ka_ | 362 | c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c | 9e-64 |
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Human (Homo sapiens) [TaxId: 9606]
Score = 240 bits (612), Expect = 1e-74
Identities = 117/337 (34%), Positives = 181/337 (53%), Gaps = 21/337 (6%)
Query: 100 DIKGC-IRVFCRVRSFLVTGRRVIHEPVLT-ELEKVVVRSGGSKKEFGFDKVFNQAASQE 157
D+ C I+V CR R + + + + E VV + K + FD+VF + SQE
Sbjct: 1 DLAECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIA---SKPYAFDRVFQSSTSQE 57
Query: 158 DVFVE-VEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTS---DQPGIVPRALEELFRQA 213
V+ + + I++ L+G+N + AYGQT +GKT TM+G + GI+PR ++++F
Sbjct: 58 QVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYI 117
Query: 214 AL-DNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGTVEIEGLT 272
D + +S E+Y+ +RDLL NL++ D ++G T
Sbjct: 118 YSMDENLEFHIKVSYFEIYLDKIRDLLDVSK----------TNLSVHEDKNRVPYVKGCT 167
Query: 273 EVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLW 332
E + + ++G+ R + TN+NE SSRSH + I + + E K KL+
Sbjct: 168 ERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKL-SGKLY 226
Query: 333 MVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRD 392
+VDL GSE+V KTGA G LDE + IN SLSAL +VI+AL +VPYR+SK+T+IL+D
Sbjct: 227 LVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQD 286
Query: 393 SLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGI 429
SLG + +++ SP + ET +L F +RA+ I
Sbjct: 287 SLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 323
|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368 | Back information, alignment and structure |
|---|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345 | Back information, alignment and structure |
|---|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354 | Back information, alignment and structure |
|---|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330 | Back information, alignment and structure |
|---|
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364 | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349 | Back information, alignment and structure |
|---|
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 641 | |||
| d2ncda_ | 368 | Kinesin motor Ncd (non-claret disjunctional) {Frui | 100.0 | |
| d1sdma_ | 364 | Kinesin heavy chain-like protein {Potato (Solanum | 100.0 | |
| d1goja_ | 354 | Kinesin {Neurospora crassa [TaxId: 5141]} | 100.0 | |
| d1v8ka_ | 362 | Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 | 100.0 | |
| d1f9va_ | 342 | Kinesin motor Ncd (non-claret disjunctional) {Bake | 100.0 | |
| d1x88a1 | 345 | Kinesin {Human (Homo sapiens), mitotic kinesin eg5 | 100.0 | |
| d2zfia1 | 349 | Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090 | 100.0 | |
| d1bg2a_ | 323 | Kinesin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ry6a_ | 330 | Kinesin {Malaria parasite (Plasmodium falciparum) | 100.0 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 95.15 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 90.19 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 89.38 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 89.24 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 88.77 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 86.09 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 85.16 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 83.9 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 82.0 |
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin motor Ncd (non-claret disjunctional) species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=100.00 E-value=0 Score=669.90 Aligned_cols=357 Identities=34% Similarity=0.516 Sum_probs=322.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCC-CEEECCCEEEEEEC
Q ss_conf 77899999999999999999999998989999999663231899889999828999665776657-58942987999959
Q 006540 60 EQQKNELEQSIINLEGEIVELRLKKRRLDEKRREALNKILDIKGCIRVFCRVRSFLVTGRRVIHE-PVLTELEKVVVRSG 138 (641)
Q Consensus 60 e~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~Rr~lhn~i~~lkG~IrV~~RvRP~~~~e~~~~~~-~v~~~~~~v~i~~~ 138 (641)
+++.++|+..++++..++..++.++++.+..||+|||++.|+||||||+|||||+...|...... ++..+...+.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gnIkV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~~ 81 (368)
T d2ncda_ 2 RQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSI 81 (368)
T ss_dssp CSSSGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEEEECCCCGGGTTSCBCEEEEETTTEEEEECS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHCCCCCCEEEECCCCEEEECCC
T ss_conf 15899999999999999999999999999999998748997569979999907899010278985799579986997068
Q ss_pred -------CCEEEEEECEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCHHHHHHHHHH
Q ss_conf -------9127998115656989803468605999999634952117721567999332513799999944578999999
Q 006540 139 -------GSKKEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFR 211 (641)
Q Consensus 139 -------~~~k~F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfAYGqTGSGKTyTM~G~~~~~GIIpRai~~LF~ 211 (641)
...+.|.||+||+++++|++||+.|.|+|+++++|||+||||||||||||||||+|+++++|||||++++||.
T Consensus 82 ~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~v~plv~~vl~G~n~ti~aYGqtGSGKT~Tm~G~~~~~Giipr~~~~Lf~ 161 (368)
T d2ncda_ 82 DAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFD 161 (368)
T ss_dssp CHHHHTTTCCCEEECSEEECTTCCHHHHHTTTHHHHHHHHTTCEEEEEEECSTTSSHHHHHTEETTEECHHHHHHHHHHH
T ss_pred CCCCCCCCCCEEEECCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHHH
T ss_conf 86556776864667785879999862149999988987750365137731157875606713666443446679998764
Q ss_pred HHHC--CCCCEEEEEEEEEEEECCEEEECCCCCCCCCHHHHHCCCCEEEEECCCCCEEECCCEEEECCCHHHHHHHHHHH
Q ss_conf 9722--79960899985999955603324899974300111003660167689998685696899828957889999974
Q 006540 212 QAAL--DNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKG 289 (641)
Q Consensus 212 ~~~~--~~~~~~~V~vS~lEIYnE~I~DLL~~~~~~~~~~~~~~~~L~i~ed~~~~v~V~glt~v~V~s~~e~~~ll~~g 289 (641)
.+.. ..+..|.|.+||+|||||+|+|||.+.... ....+++++.+++++.|++++.|.+++++..++..|
T Consensus 162 ~~~~~~~~~~~~~v~vS~~EIyne~i~DLL~~~~~~--------~~~~~~~d~~~~~~v~g~~~~~v~~~~~~~~~l~~g 233 (368)
T d2ncda_ 162 SIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKD--------MEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTA 233 (368)
T ss_dssp HHHHHHTTSCEEEEEEEEEEESSSCEEETTCSSCCC--------CCEEECTTCTTCEEETTCCCEEECSHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCEEEEEEEEEECCEEECCCCCCCCC--------CCCEEECCCCCCCCCCCCCEECCCCHHHHHHHHHHH
T ss_conf 544320245552689999988656020125642135--------431130266644233443022047778899999998
Q ss_pred HHHCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 32024444577789888267999999983577877058967587865898432356987610256655138799999999
Q 006540 290 RRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVI 369 (641)
Q Consensus 290 ~~~R~~~sT~~N~~SSRSH~If~I~i~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g~rlkE~~~INkSLsaLg~VI 369 (641)
.++|.++.|.+|..|||||+||+|++....... +....|+|+||||||+|+.. .+.+++|+..||+||++|++||
T Consensus 234 ~~~r~~~~t~~n~~ssrSh~i~~i~v~~~~~~~-~~~~~s~l~~VDLAGse~~~----~~~~~~E~~~IN~SL~aL~~vi 308 (368)
T d2ncda_ 234 KMNRATASTAGNERSSRSHAVTKLELIGRHAEK-QEISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVI 308 (368)
T ss_dssp HHHSCCCSSSCTTTTTTCEEEEEEEEEEECTTS-CCEEEEEEEEEECCCCCCC--------------CTTHHHHHHHHHH
T ss_pred HHHCCCCCCCCCCCCCCCCEEEEEEEEEEECCC-CCEEEEEEEEEEECCCCCCC----HHHHHCCCCCCHHHHHHHHHHH
T ss_conf 751124422146545554327899999976698-85676544442201023310----2321024552026499999999
Q ss_pred HHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 999718999557898210022201489862103773399977778769999999996123
Q 006540 370 AALRRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGI 429 (641)
Q Consensus 370 ~aL~~k~~hIPYRdSKLT~LLqdsLgGnskT~mI~~ISP~~~~~~ETlsTLrFA~rak~I 429 (641)
.+|++++.|||||+||||+||+|+|||||+|+||+||||+..+++||++||+||+|||++
T Consensus 309 ~aL~~~~~~iPyR~SkLT~lL~dsLggns~t~mI~~isp~~~~~~eTl~TL~fa~rak~~ 368 (368)
T d2ncda_ 309 LALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSC 368 (368)
T ss_dssp HHHHTTCSCCCGGGSHHHHHHGGGSSSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 998658998997578889998985599870999999798735499999999999997569
|
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|