Citrus Sinensis ID: 006547

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-
MAVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNTYCELEQWAWTCSLCGSLNGLSSQAIARYTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSRPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARHTSEQPMLQIAFQYTVVVPPEELSSEGLGSVILASLEQGVREGRMLLHDWLVILTAQYNEAFKLVQHNIGNSVTSQIDVEFLQCPQLQRLPRLVFALLRNPLLRFHEEGVHPDYRIYLQCLFSALEPSSLQRAVYPLLTSYSTPDKQAFPRHSLSRAALITSGSPIFLLDAFTTIIVFYSSTADPTLPFPPPQDCKFSLISLGFI
ccEEcccccccccHHHHHHccccEEEEEcccccccccccccccccccccccccccccEEEEcccEEEccEEEEccccccccccHHHHHccccccccccccccEEEEEEccccccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHcccccEEEEEEEcEEEEEEEEccccccccEEEcccccccccHHHHHcccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccEEEEEEccccccccccEEcccccccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEccccccccccccccccccccEEEEEcccccccHHHHHHHHHcccccccEEEEEEccccEEEEEEEEccccccccccEEEEEccccccEEEEEEEEEcccccccccccccEEEEEEEEEEccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHccccHHHHHHHHcccEEEcccccccccccccccHHHHccccccEEEEEcccEEEEEEcccccccccccccccccccccccccc
ccEEEEEccccccHHHHHcccccEEEEEccHcccccccccccEcccccccccccccEEEEccEEEEcccEEEcccccccccccHHHHHHcccccccccccccEEEEEEcHHHccccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHccccEEEEEEEEccEEEEEEccccccccccEEEEccccccccccHHHHccHHHHcccHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccEEEEEEEccccccccccccccccccHHcccccccccHHccccHHHHHHHHHHHHHcccEEEEEEEcccHccHHEccccccccccEEEEcccccHHHHHHHHHHHHHHHccccEEEEEEEcccEEEcccEEcEEEccccccEEEccccccccEEEEEEEEEcccccccccccEEEEEEEEEEEcccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHcccccccccHHHcHHHHHHHHHHHccccEcccccccccHHHHHHHHHHcccHHHHHHHHccccccccccccccccccccccHHHccccccEEEEccccEEEEEEcccccccccccccccccccEEEEccc
mavratvsrfpsdpdaqeasglpwgvtvtpfatkdengaapvygsdghmlprcenCYAYFNTYCELEQWAWtcslcgslnglSSQAIARYTHPQSCAEMISSFIdldlplegseeetmqarPVYVAAVDLSSSEEFLELTRSALQAALEavpsgalfglatfshkiglydvqgaipvvknvfipsdtedtLSLEledvmplsqflapvETFKENITSALetlrpttswertagaaqgldgvlmggRGFGLAMESLFNYLGSEYGNTFALARVFAFlsgppdhgagqldtrrygeqyaskgedadrallpeqtpfyKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLsiesggslflysstddstlpqdIYRMlsrpyafncimrlrtssefkpghsyghffpdpqyenvqhiiccdsyatyaydfdfanaagfarhtseqpmLQIAFQYtvvvppeelsseglGSVILASLEQGVREGRMLLHDWLVILTAQYNEAFKLVQHNIGNSVTSQIdveflqcpqlqrlPRLVFALLRnpllrfheegvhpdyRIYLQCLFsalepsslqravyplltsystpdkqafprhslSRAAlitsgspifllDAFTTIIVFYsstadptlpfpppqdckfslislgfi
mavratvsrfpsdpdaqeasglpWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNTYCELEQWAWTCSLCGSLNGLSSQAIARYTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELEDVMPLSQFLAPVETFKENITSALetlrpttsweRTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSRPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARHTSEQPMLQIAFQYTVVVPPEELSSEGLGSVILASLEQGVREGRMLLHDWLVILTAQYNEAFKLVQHNIGNSVTSQIDVEFLQCPQLQRLPRLVFALLRNPLLRFHEEGVHPDYRIYLQCLFSALEPSSLQRAVYPLLTSYSTPDKQAFPRHSLSRAALITSGSPIFLLDAFTTIIVFYSSTADPTLPFPPPQDCKFSLISLGFI
MAVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNTYCELEQWAWTcslcgslnglssQAIARYTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSRPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARHTSEQPMLQIAFQYTVVVPPEELSSEGLGSVILASLEQGVREGRMLLHDWLVILTAQYNEAFKLVQHNIGNSVTSQIDVEFlqcpqlqrlprlVFALLRNPLLRFHEEGVHPDYRIYLQCLFSALEPSSLQRAVYPLLTSYSTPDKQAFPRHSLSRAALITSGSPIFLLDAFTTIIVFYSSTADPTLPFPPPQDCKFSLISLGFI
*********************LPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNTYCELEQWAWTCSLCGSLNGLSSQAIARYTHPQSCAEMISSFIDLDLPL**********RPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSG*****************************LPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSRPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARHTSEQPMLQIAFQYTVVVPPEELSSEGLGSVILASLEQGVREGRMLLHDWLVILTAQYNEAFKLVQHNIGNSVTSQIDVEFLQCPQLQRLPRLVFALLRNPLLRFHEEGVHPDYRIYLQCLFSALEPSSLQRAVYPLLTSYST*****F*RHSLSRAALITSGSPIFLLDAFTTIIVFYSSTADPTLPF****DCKFSLIS****
MAVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNTYCELEQWAWTCSLCGSLNGLSSQAIARYTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGA*******LMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQ********************LLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSRPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANA*****HTSEQPMLQIAFQYTVVVPPEELSSEGLGSVILASLEQGVREGRMLLHDWLVILTAQYNEAFKLVQHNIG**********FLQCPQLQRLPRLVFALLRNPLLRFHEEGVHPDYRIYLQCLFSALEPSSLQRAVYPLLTSYSTPDKQAFPRHSLSRAALITSGSPIFLLDAFTTIIVFYSSTADPTLP*PPP***KFSLISLGFI
******************ASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNTYCELEQWAWTCSLCGSLNGLSSQAIARYTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSRPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARHTSEQPMLQIAFQYTVVVPPEELSSEGLGSVILASLEQGVREGRMLLHDWLVILTAQYNEAFKLVQHNIGNSVTSQIDVEFLQCPQLQRLPRLVFALLRNPLLRFHEEGVHPDYRIYLQCLFSALEPSSLQRAVYPLLTSYSTPDKQAFPRHSLSRAALITSGSPIFLLDAFTTIIVFYSSTADPTLPFPPPQDCKFSLISLGFI
*AVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNTYCELEQWAWTCSLCGSLNGLSSQAIARYTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSRPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARHTSEQPMLQIAFQYTVVVPPEELSSEGLGSVILASLEQGVREGRMLLHDWLVILTAQYNEAFKLVQHNIGNSVTSQIDVEFLQCPQLQRLPRLVFALLRNPLLRFHEEGVHPDYRIYLQCLFSALEPSSLQRAVYPLLTSYSTPDKQAFPRHSLSRAALITSGSPIFLLDAFTTIIVFYSSTADPTLPFPPPQDCKFSLISLGFI
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MAVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNTYCELEQWAWTCSLCGSLNGLSSQAIARYTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSRPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARHTSEQPMLQIAFQYTVVVPPEELSSEGLGSVILASLEQGVREGRMLLHDWLVILTAQYNEAFKLVQHNIGNSVTSQIDVEFLQCPQLQRLPRLVFALLRNPLLRFHEEGVHPDYRIYLQCLFSALEPSSLQRAVYPLLTSYSTPDKQAFPRHSLSRAALITSGSPIFLLDAFTTIIVFYSSTADPTLPFPPPQDCKFSLISLGFI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query641 2.2.26 [Sep-21-2011]
Q758M7756 Protein transport protein yes no 0.881 0.747 0.233 4e-23
Q6CPH3760 Protein transport protein yes no 0.893 0.753 0.239 3e-21
Q9SFU01038 Protein transport protein no no 0.741 0.457 0.224 6e-21
Q9USS7891 Uncharacterized protein C yes no 0.563 0.405 0.242 1e-20
Q6BQT6746 Protein transport protein yes no 0.893 0.768 0.243 2e-20
A3GFA2749 Protein transport protein yes no 0.893 0.765 0.231 6e-19
P15303 768 Protein transport protein yes no 0.575 0.480 0.259 2e-18
Q54U611013 Protein transport protein no no 0.552 0.349 0.234 2e-18
A6QNT81099 Protein transport protein yes no 0.564 0.329 0.253 5e-18
A5DA00748 Protein transport protein N/A no 0.909 0.779 0.225 6e-18
>sp|Q758M7|SEC23_ASHGO Protein transport protein SEC23 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SEC23 PE=3 SV=1 Back     alignment and function desciption
 Score =  110 bits (275), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 162/693 (23%), Positives = 275/693 (39%), Gaps = 128/693 (18%)

Query: 2   AVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAA---PVYGSDGHMLPRCENCYA 58
            VR + + FP+       + +P G   TP    +E       PV     H       C A
Sbjct: 11  GVRFSWNVFPASRTDANKNVVPVGCLYTPLKEIEELAVVSYNPVVCGGPH-------CKA 63

Query: 59  YFNTYCELEQWA--WTCSLCGSLNGLSSQAIARYTHPQSCAEMISSFIDLDLPLEGSEEE 116
             N YCE++  +  W C LCG+ N L  Q  A  +     AE+ S+ +      E     
Sbjct: 64  VLNPYCEIDVRSNVWACPLCGTRNHLP-QHYANMSQEAMPAELNSTTV------EYITNR 116

Query: 117 TMQARPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIP 176
            +Q  P++   VD+++ EE L+  + ++  +L  +P  AL GL T+ + + L+D+     
Sbjct: 117 PVQVAPIFFYVVDVTAEEENLQALKDSIITSLSLLPPNALVGLITYGNVVQLHDLSCTAI 176

Query: 177 VVKNVFIPSDTEDTLSLELE-----------------DVMP--LSQFLAPVETFKENITS 217
              NVF   D E  L   +E                  + P  L++F  P+E  +  +T 
Sbjct: 177 DKCNVF-RGDREYQLQQLVEMLTGEKSGGNLSAGPQMKITPFSLNRFFLPLEHVEFKLTQ 235

Query: 218 ALETLRPTTSWE--------RTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFAL 269
            LE LRP   W         R  G+A  +  +L+ G    +A                  
Sbjct: 236 LLENLRP-DQWTIPPGHRPLRATGSALNIATLLLQGCYRHVA------------------ 276

Query: 270 ARVFAFLSGPPDHGAGQLDTRRYGEQYASKGE-DADRALLPEQT-PFYKDLAAVAVQAGV 327
           AR+  F SGP     G + +    +   S  + D+D A   ++   FY  LA  A + G 
Sbjct: 277 ARICLFASGPGTVAPGMIVSSELKDPLRSHHDIDSDNAKHHKKACKFYNQLAERAAENGH 336

Query: 328 CVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSR------PYAFN 381
            +DIFA   +   ++ +K L+  +GG L L  +   +   Q   R+ S+        AFN
Sbjct: 337 TIDIFAGCYDQVGMSEMKKLTDSTGGVLLLTDAFSTAIFKQSFIRLFSKDEEGYLTMAFN 396

Query: 382 CIMRLRTSSEFKPGHSYGHFFP-DPQYENVQ------------HIICCDSYATYAYDFDF 428
             M ++TS++ K     GH  P +   +NV              +     + +YA  F+ 
Sbjct: 397 ASMCIKTSADLKLQGLIGHASPVNVDAQNVSDSEIGIGGTSTWKMASLSPHHSYAIFFEI 456

Query: 429 ANAAGFARHTSEQPMLQ-----IAFQY---TVVVPPEELSSEGL---GSVILASLEQGVR 477
           AN A  A    ++P L       A+Q+   T  V    ++++ L      I AS +Q   
Sbjct: 457 ANTAATASLMGDRPKLAYTQFITAYQHASGTNRVRVTTVANQMLPFGNPAIAASFDQ--- 513

Query: 478 EGRMLLHDWLVILTAQYNEA-----------FKLVQ----HNIGNSVTSQIDVEFLQCPQ 522
           E   +L   + +  A  ++             KL Q    +N G+  +      F   P 
Sbjct: 514 EAAAVLMARVAVDKADSDDGADVIRWIDRTLIKLCQKYADYNKGDPRS------FRLAPN 567

Query: 523 LQRLPRLVFALLRNPLLRFHEEGVHPDYRIYLQCLFSALEPSSLQRAVYPLLTSYSTPDK 582
               P+ ++ L R+  L        PD   + + +F+  + ++    + P LTS+S  ++
Sbjct: 568 FSLYPQFIYYLRRSQFLSVFNNS--PDETAFYRHIFTREDTTNSLIMIQPTLTSFSMEEE 625

Query: 583 QAFPRHSLSRAALITSGSPIFLLDAFTTIIVFY 615
              P+  L  +  +   + I LLD F  I++++
Sbjct: 626 ---PQPVLLDSVSVKPNT-ILLLDTFFYILIYH 654
Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules.
Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)
>sp|Q6CPH3|SEC23_KLULA Protein transport protein SEC23 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SEC23 PE=3 SV=1 Back     alignment and function description
>sp|Q9SFU0|SC24A_ARATH Protein transport protein Sec24-like At3g07100 OS=Arabidopsis thaliana GN=At3g07100 PE=1 SV=2 Back     alignment and function description
>sp|Q9USS7|YNB3_SCHPO Uncharacterized protein C4.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC4.03c PE=2 SV=1 Back     alignment and function description
>sp|Q6BQT6|SEC23_DEBHA Protein transport protein SEC23 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SEC23 PE=3 SV=1 Back     alignment and function description
>sp|A3GFA2|SEC23_PICST Protein transport protein SEC23 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=SEC23 PE=3 SV=2 Back     alignment and function description
>sp|P15303|SEC23_YEAST Protein transport protein SEC23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC23 PE=1 SV=1 Back     alignment and function description
>sp|Q54U61|SEC24_DICDI Protein transport protein SEC24 OS=Dictyostelium discoideum GN=sec24 PE=3 SV=1 Back     alignment and function description
>sp|A6QNT8|SC24A_BOVIN Protein transport protein Sec24A OS=Bos taurus GN=SEC24A PE=2 SV=1 Back     alignment and function description
>sp|A5DA00|SEC23_PICGU Protein transport protein SEC23 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=SEC23 PE=3 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query641
225464936 744 PREDICTED: protein transport protein Sec 0.984 0.848 0.794 0.0
359479507 760 PREDICTED: protein transport protein Sec 0.984 0.830 0.775 0.0
224131820 744 predicted protein [Populus trichocarpa] 0.984 0.848 0.804 0.0
255565655740 expressed protein, putative [Ricinus com 0.978 0.847 0.816 0.0
359479509740 PREDICTED: protein transport protein Sec 0.978 0.847 0.786 0.0
224104861 744 predicted protein [Populus trichocarpa] 0.984 0.848 0.792 0.0
147785809 746 hypothetical protein VITISV_037581 [Viti 0.975 0.837 0.754 0.0
297822415 745 sec23/sec24 transport family protein [Ar 0.984 0.846 0.763 0.0
356539252 747 PREDICTED: protein transport protein SEC 0.984 0.844 0.765 0.0
356542764 747 PREDICTED: protein transport protein SEC 0.984 0.844 0.768 0.0
>gi|225464936|ref|XP_002275292.1| PREDICTED: protein transport protein Sec24-like At3g07100 isoform 1 [Vitis vinifera] gi|296084904|emb|CBI28313.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1118 bits (2892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/675 (79%), Positives = 588/675 (87%), Gaps = 44/675 (6%)

Query: 1   MAVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYF 60
           MAVRAT+SRFP DPDAQE SGLPWGVTVTPFATKDENG +PVYGSDGH+LPRCENC+AYF
Sbjct: 1   MAVRATMSRFPMDPDAQEGSGLPWGVTVTPFATKDENGNSPVYGSDGHLLPRCENCWAYF 60

Query: 61  NTYCELEQWAWTCSLCGSLNGLSSQAIARYTHPQSCAEMISSFIDLDLPLEGSEEETMQA 120
           NTYCELEQWAW CSLCG+LNGL+S+AI RY+ PQSCAEM+SSFIDL+LP+EGSE E MQA
Sbjct: 61  NTYCELEQWAWNCSLCGTLNGLTSEAITRYSQPQSCAEMMSSFIDLELPVEGSEGEAMQA 120

Query: 121 RPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKN 180
           RPVYVAA+DLSSSEEFLEL +S+L AALEA+  GALFGLATFSHKIGLYDVQG +PVVKN
Sbjct: 121 RPVYVAAIDLSSSEEFLELIKSSLLAALEALGPGALFGLATFSHKIGLYDVQGPVPVVKN 180

Query: 181 VFIPSDTEDTLSLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDG 240
           VF+P+D++ +L +ELEDVMPL  FLAPVET K+ I SALETL+PTTSWERT+ A QGLDG
Sbjct: 181 VFVPADSDASLPIELEDVMPLLSFLAPVETCKDRIASALETLKPTTSWERTSAAGQGLDG 240

Query: 241 VLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYASKG 300
           +L+GGRGFG+AME+LFNYLGSEYG+TFALARVFAFLSGPPD+GAGQLDTRRYGEQYASKG
Sbjct: 241 ILLGGRGFGVAMEALFNYLGSEYGSTFALARVFAFLSGPPDYGAGQLDTRRYGEQYASKG 300

Query: 301 EDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSS 360
           EDADRALLPEQTPFYKDLAAVAVQAGVCVDIFA+TNEYTDLASLKFLSIESGGSLFLYS+
Sbjct: 301 EDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAVTNEYTDLASLKFLSIESGGSLFLYSN 360

Query: 361 TDDSTLPQDIYRMLSRPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYA 420
           TDDSTLPQD+YRMLSRPYAF CI+RLRTSSEF+PG+SYGHFFPDPQYENVQHIICCDSY 
Sbjct: 361 TDDSTLPQDMYRMLSRPYAFGCILRLRTSSEFRPGNSYGHFFPDPQYENVQHIICCDSYV 420

Query: 421 TYAYDFDFANAAGFARHTSEQPMLQIAFQYTVVVPPEELSSEG----------------- 463
           TYAYDFDFAN  GF+RHTSE PMLQIAFQYTVVVPP+ELS+ G                 
Sbjct: 421 TYAYDFDFANTTGFSRHTSEPPMLQIAFQYTVVVPPDELSTPGSVSASRSKHCLKRRLRI 480

Query: 464 ---------------------------LGSVILASLEQGVREGRMLLHDWLVILTAQYNE 496
                                      +  VILASLEQGVREGRMLLHDWLVIL AQYN+
Sbjct: 481 RTLQYLSAQNSSELYDSVDPEVVLSVLVHKVILASLEQGVREGRMLLHDWLVILIAQYND 540

Query: 497 AFKLVQHNIGNSVTSQIDVEFLQCPQLQRLPRLVFALLRNPLLRFHEEGVHPDYRIYLQC 556
           A+KL+Q+  G+S T+ +DV F QCPQLQ LPRLVFALLRNPLLRFHEEGVHPDYRIYLQC
Sbjct: 541 AYKLLQYRNGSSTTAHVDVAFSQCPQLQPLPRLVFALLRNPLLRFHEEGVHPDYRIYLQC 600

Query: 557 LFSALEPSSLQRAVYPLLTSYSTPDKQAFPRHSLSRAALITSGSPIFLLDAFTTIIVFYS 616
           LFSALEPSSL RAVYP+LTSYS PDKQA+PRHSLSRAALITSGSPIF LDAFTT+IVFYS
Sbjct: 601 LFSALEPSSLHRAVYPVLTSYSAPDKQAYPRHSLSRAALITSGSPIFFLDAFTTLIVFYS 660

Query: 617 STADPTLPFPPPQDC 631
           STADP LP+PPP DC
Sbjct: 661 STADPILPYPPPHDC 675

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359479507|ref|XP_003632282.1| PREDICTED: protein transport protein Sec24-like At3g07100 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224131820|ref|XP_002328116.1| predicted protein [Populus trichocarpa] gi|222837631|gb|EEE75996.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255565655|ref|XP_002523817.1| expressed protein, putative [Ricinus communis] gi|223536905|gb|EEF38543.1| expressed protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359479509|ref|XP_003632283.1| PREDICTED: protein transport protein Sec24-like At3g07100 isoform 3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224104861|ref|XP_002313596.1| predicted protein [Populus trichocarpa] gi|222850004|gb|EEE87551.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147785809|emb|CAN62128.1| hypothetical protein VITISV_037581 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297822415|ref|XP_002879090.1| sec23/sec24 transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297324929|gb|EFH55349.1| sec23/sec24 transport family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356539252|ref|XP_003538113.1| PREDICTED: protein transport protein SEC24-1-like [Glycine max] Back     alignment and taxonomy information
>gi|356542764|ref|XP_003539835.1| PREDICTED: protein transport protein SEC24-1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query641
TAIR|locus:2038633 745 AT2G27460 "AT2G27460" [Arabido 0.781 0.672 0.742 2.1e-270
DICTYBASE|DDB_G0271044782 DDB_G0271044 "putative protein 0.248 0.203 0.366 3.5e-47
FB|FBgn02621261193 gho "ghost" [Drosophila melano 0.227 0.122 0.346 2.6e-15
TAIR|locus:20985451038 ERMO2 "AT3G07100" [Arabidopsis 0.570 0.352 0.226 1.2e-14
UNIPROTKB|E1BSP8993 SEC24D "Uncharacterized protei 0.240 0.155 0.290 2.8e-13
POMBASE|SPBC4.03c891 SPBC4.03c "COPII-coated vesicl 0.240 0.172 0.273 3.2e-13
TAIR|locus:21002021096 CEF "AT3G44340" [Arabidopsis t 0.230 0.135 0.289 4.5e-13
UNIPROTKB|E2RH29 767 SEC23B "Uncharacterized protei 0.581 0.486 0.225 1.2e-12
UNIPROTKB|F1SBH2 767 SEC23B "Uncharacterized protei 0.581 0.486 0.225 1.2e-12
ZFIN|ZDB-GENE-030131-44871241 sec24c "SEC24 family, member C 0.240 0.124 0.296 3.2e-12
TAIR|locus:2038633 AT2G27460 "AT2G27460" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1977 (701.0 bits), Expect = 2.1e-270, Sum P(2) = 2.1e-270
 Identities = 383/516 (74%), Positives = 430/516 (83%)

Query:     1 MAVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYF 60
             MAVRATVSRFP D DAQEASGLPWG+TVTPFA KDENG  P  GS+GH+LPRCENCYAYF
Sbjct:     1 MAVRATVSRFPIDSDAQEASGLPWGLTVTPFAAKDENGIGPACGSNGHLLPRCENCYAYF 60

Query:    61 NTYCELEQWAWTXXXXXXXXXXXXQAIARYTHPQSCAEMISSFIDLDLPLEGSEEETMQA 120
             NTYCEL+QWAW              AIARY++P S  EM SSFIDL++PL+GSEEE  QA
Sbjct:    61 NTYCELDQWAWNCSLCGTLNGLPSDAIARYSNPHSIPEMTSSFIDLEMPLDGSEEEMTQA 120

Query:   121 RPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKN 180
             RPVYVAA+D+SSSEEFLELT+SAL AALEA+  GALFGL TFSHKIGLYDVQG IPVVKN
Sbjct:   121 RPVYVAAIDISSSEEFLELTKSALLAALEALSPGALFGLVTFSHKIGLYDVQGPIPVVKN 180

Query:   181 VFIPSDTEDTLSLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDG 240
             VFIP D E +LSLELEDVMPL QFLAPVET K+ I +ALETLRP TSWER+AGA QG+D 
Sbjct:   181 VFIPPDGESSLSLELEDVMPLLQFLAPVETCKDRIAAALETLRPITSWERSAGAGQGMDS 240

Query:   241 VLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYASKG 300
             VLMGGRGFG AME+LFNYLGSE+GNTFALARVFAFLSGPPD+G GQLDT RYGEQYASK 
Sbjct:   241 VLMGGRGFGTAMEALFNYLGSEFGNTFALARVFAFLSGPPDYGRGQLDTSRYGEQYASKR 300

Query:   301 EDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSS 360
              DADRALLPEQTPFYKDLA +AVQ+GVCVD+FA+TNEYTDLASLKFLSIESGGSLFLYSS
Sbjct:   301 VDADRALLPEQTPFYKDLATIAVQSGVCVDLFAVTNEYTDLASLKFLSIESGGSLFLYSS 360

Query:   361 TDDSTLPQDIYRMLSRPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYA 420
             TDDSTLPQD++RML+RPYAFNC++RLRTS+EFKPG+S+GHFFPDPQYEN+QHIICCDSYA
Sbjct:   361 TDDSTLPQDMFRMLNRPYAFNCVLRLRTSTEFKPGNSFGHFFPDPQYENLQHIICCDSYA 420

Query:   421 TYAYDFDFANAAGFARHTSEQPMLQIAFQYTVVVPPEELSSEGLGSVILASLEQGVREGR 480
             TYAYDF+FA+  GF+RH+ EQP++QIAFQYTVVVPPE LS+  + S   +S       G+
Sbjct:   421 TYAYDFEFADNTGFSRHSGEQPVVQIAFQYTVVVPPEGLSNSEMSS---SS------RGK 471

Query:   481 MLLHDWLVILTAQYNEAFKLVQHNIGNSVTSQIDVE 516
               L   L I T Q+  A     HNI N +   +D E
Sbjct:   472 HTLQRRLRIRTMQFGTA-----HNI-NEIYDSVDHE 501
GO:0005215 "transporter activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0016192 "vesicle-mediated transport" evidence=ISS
GO:0030127 "COPII vesicle coat" evidence=IEA
DICTYBASE|DDB_G0271044 DDB_G0271044 "putative protein transport protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0262126 gho "ghost" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
TAIR|locus:2098545 ERMO2 "AT3G07100" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1BSP8 SEC24D "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
POMBASE|SPBC4.03c SPBC4.03c "COPII-coated vesicle component Sfb3 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
TAIR|locus:2100202 CEF "AT3G44340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E2RH29 SEC23B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SBH2 SEC23B "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-4487 sec24c "SEC24 family, member C (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query641
cd01468239 cd01468, trunk_domain, trunk domain 2e-53
COG5028861 COG5028, COG5028, Vesicle coat complex COPII, subu 3e-28
pfam04811241 pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain 2e-23
COG5047755 COG5047, SEC23, Vesicle coat complex COPII, subuni 2e-19
cd01479244 cd01479, Sec24-like, Sec24-like: Protein and membr 7e-17
cd01478267 cd01478, Sec23-like, Sec23-like: Protein and membr 1e-14
PLN00162761 PLN00162, PLN00162, transport protein sec23; Provi 1e-12
pfam04815103 pfam04815, Sec23_helical, Sec23/Sec24 helical doma 5e-11
pfam0481039 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger 5e-08
pfam0803386 pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich dom 2e-04
>gnl|CDD|238745 cd01468, trunk_domain, trunk domain Back     alignment and domain information 
 Score =  182 bits (464), Expect = 2e-53
 Identities = 79/263 (30%), Positives = 121/263 (46%), Gaps = 33/263 (12%)

Query: 119 QARPVYVAAVDLSSS---EEFLELTRSALQAALEAVP--SGALFGLATFSHKIGLYDVQG 173
              PV+V  +D+S     E  L+  + +L A+L+ +P    A  GL T+   +  Y++  
Sbjct: 1   PQPPVFVFVIDVSYEAIKEGLLQALKESLLASLDLLPGDPRARVGLITYDSTVHFYNLSS 60

Query: 174 AIPVVKNVFIPSDTEDTLSLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAG 233
            +   K +++ SD +D        +    +FL P+   K+ I   LE L P      T  
Sbjct: 61  DLAQPK-MYVVSDLKDVF------LPLPDRFLVPLSECKKVIHDLLEQLPPMFWPVPT-- 111

Query: 234 AAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYG 293
                       R  G A+++ F  L      TFA  R+  F  G P  G G+L +R   
Sbjct: 112 --------HRPERCLGPALQAAFLLLKG----TFAGGRIIVFQGGLPTVGPGKLKSREDK 159

Query: 294 EQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGG 353
           E   S     +  LL   T FYK LA   V++G+CVD+FA + +Y D+A+LK L+  +GG
Sbjct: 160 EPIRS---HDEAQLLKPATKFYKSLAKECVKSGICVDLFAFSLDYVDVATLKQLAKSTGG 216

Query: 354 SLFLYSS----TDDSTLPQDIYR 372
            ++LY S     D S   QD+ R
Sbjct: 217 QVYLYDSFQAPNDGSKFKQDLQR 239

COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins. Length = 239
>gnl|CDD|227361 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|147125 pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain Back     alignment and domain information
>gnl|CDD|227380 COG5047, SEC23, Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|238756 cd01479, Sec24-like, Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>gnl|CDD|238755 cd01478, Sec23-like, Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>gnl|CDD|215083 PLN00162, PLN00162, transport protein sec23; Provisional Back     alignment and domain information
>gnl|CDD|218277 pfam04815, Sec23_helical, Sec23/Sec24 helical domain Back     alignment and domain information
>gnl|CDD|203092 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger Back     alignment and domain information
>gnl|CDD|219707 pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 641
KOG1985887 consensus Vesicle coat complex COPII, subunit SEC2 100.0
KOG19841007 consensus Vesicle coat complex COPII, subunit SFB3 100.0
PLN00162761 transport protein sec23; Provisional 100.0
COG5028861 Vesicle coat complex COPII, subunit SEC24/subunit 100.0
PTZ003951560 Sec24-related protein; Provisional 100.0
KOG1986745 consensus Vesicle coat complex COPII, subunit SEC2 100.0
COG5047755 SEC23 Vesicle coat complex COPII, subunit SEC23 [I 100.0
cd01478267 Sec23-like Sec23-like: Protein and membrane traffi 100.0
cd01479244 Sec24-like Sec24-like: Protein and membrane traffi 100.0
cd01468239 trunk_domain trunk domain. COPII-coated vesicles c 100.0
PF04811243 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: I 100.0
PF04815103 Sec23_helical: Sec23/Sec24 helical domain; InterPr 99.69
PF0481040 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: 99.54
PF0803396 Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterP 99.54
PRK13685326 hypothetical protein; Provisional 98.74
cd01453183 vWA_transcription_factor_IIH_type Transcription fa 98.7
cd01466155 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand fact 98.68
cd01465170 vWA_subgroup VWA subgroup: Von Willebrand factor t 98.67
cd01456206 vWA_ywmD_type VWA ywmD type:Von Willebrand factor 98.66
cd01451178 vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch 98.64
cd01463190 vWA_VGCC_like VWA Voltage gated Calcium channel li 98.57
cd01467180 vWA_BatA_type VWA BatA type: Von Willebrand factor 98.46
TIGR00868 863 hCaCC calcium-activated chloride channel protein 1 98.33
cd01452187 VWA_26S_proteasome_subunit 26S proteasome plays a 98.29
cd01472164 vWA_collagen von Willebrand factor (vWF) type A do 98.29
PF13768155 VWA_3: von Willebrand factor type A domain 98.28
TIGR03436296 acidobact_VWFA VWFA-related Acidobacterial domain. 98.27
cd01461171 vWA_interalpha_trypsin_inhibitor vWA_interalpha tr 98.25
cd01480186 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI 98.25
cd01470198 vWA_complement_factors Complement factors B and C2 98.22
PF13519172 VWA_2: von Willebrand factor type A domain; PDB: 3 98.13
cd01474185 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxi 98.08
cd01471186 vWA_micronemal_protein Micronemal proteins: The To 98.01
cd01469177 vWA_integrins_alpha_subunit Integrins are a class 97.91
cd01482164 vWA_collagen_alphaI-XII-like Collagen: The extrace 97.86
cd01475224 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, 97.85
TIGR03788596 marine_srt_targ marine proteobacterial sortase tar 97.82
cd01450161 vWFA_subfamily_ECM Von Willebrand factor type A (v 97.81
cd01477193 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand 97.8
TIGR02031589 BchD-ChlD magnesium chelatase ATPase subunit D. Th 97.72
PRK13406584 bchD magnesium chelatase subunit D; Provisional 97.71
PTZ00441576 sporozoite surface protein 2 (SSP2); Provisional 97.68
cd01481165 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(V 97.65
PF00092178 VWA: von Willebrand factor type A domain; InterPro 97.61
smart00327177 VWA von Willebrand factor (vWF) type A domain. VWA 97.49
TIGR02442633 Cob-chelat-sub cobaltochelatase subunit. A number 97.46
COG1240261 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolis 97.34
cd01476163 VWA_integrin_invertebrates VWA_integrin (invertebr 97.34
cd00198161 vWFA Von Willebrand factor type A (vWA) domain was 97.34
cd01464176 vWA_subfamily VWA subfamily: Von Willebrand factor 97.24
PF04056193 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like pro 97.13
cd01454174 vWA_norD_type norD type: Denitrifying bacteria con 97.04
cd01473192 vWA_CTRP CTRP for CS protein-TRAP-related protein: 96.92
cd01458218 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heter 96.8
cd01462152 VWA_YIEM_type VWA YIEM type: Von Willebrand factor 96.54
PF0062676 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gel 95.34
COG4245207 TerY Uncharacterized protein encoded in toxicity p 95.29
KOG2884259 consensus 26S proteasome regulatory complex, subun 94.42
cd01460266 vWA_midasin VWA_Midasin: Midasin is a member of th 93.87
smart0026290 GEL Gelsolin homology domain. Gelsolin/severin/vil 92.95
cd01457199 vWA_ORF176_type VWA ORF176 type: Von Willebrand fa 91.82
cd01455191 vWA_F11C1-5a_type Von Willebrand factor type A (vW 91.54
KOG0443 827 consensus Actin regulatory proteins (gelsolin/vill 90.09
PF03850276 Tfb4: Transcription factor Tfb4; InterPro: IPR0046 88.76
COG5148243 RPN10 26S proteasome regulatory complex, subunit R 86.3
KOG2807378 consensus RNA polymerase II transcription initiati 82.97
KOG2353 1104 consensus L-type voltage-dependent Ca2+ channel, a 81.89
PF06707205 DUF1194: Protein of unknown function (DUF1194); In 81.66
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=4.9e-119  Score=964.65  Aligned_cols=588  Identities=31%  Similarity=0.503  Sum_probs=521.8

Q ss_pred             CceecccCcCCCCHHHHHhcCCCeeeEEccCCCCCCCCCCCcccCCCCCCCCCCCCCeeeeccceeec--ceeEecCCCC
Q 006547            1 MAVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNTYCELEQ--WAWTCSLCGS   78 (641)
Q Consensus         1 ~~vR~T~~~~P~t~~~~~~~~lPlg~~~~Pf~~~~~~~~~p~~~~~~~~~~RC~~C~ayiNp~~~~~~--~~w~C~~C~~   78 (641)
                      +++|+|+++||.+.++++|++||||++|+||++.++  +.+........|+||++||+||||||.|++  ++|+||+|+.
T Consensus       171 ~y~RsTl~~iP~t~sLl~kskLPlglvv~Pf~~~~d--~~~~p~~~~~~IvRCr~CRtYiNPFV~fid~gr~WrCNlC~~  248 (887)
T KOG1985|consen  171 SYVRSTLSAIPQTQSLLKKSKLPLGLVVHPFAHLDD--IDPLPVITSTLIVRCRRCRTYINPFVEFIDQGRRWRCNLCGR  248 (887)
T ss_pred             HHHHHHHHhCCccHHHHHhcCCCceEEEeecccccc--cCCCCcccCCceeeehhhhhhcCCeEEecCCCceeeechhhh
Confidence            479999999999999999999999999999997763  223334567889999999999999999975  7999999999


Q ss_pred             CCCCChhhhcc-----cCCCcCccccccccEEEEecCCCCccccCCCCcEEEEEEECCCCh---hHHHHHHHHHHHHHHh
Q 006547           79 LNGLSSQAIAR-----YTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSE---EFLELTRSALQAALEA  150 (641)
Q Consensus        79 ~N~~p~~~~~~-----~~~~~~~pEL~~~tve~~~p~~y~~~~~~~~~p~~vFvID~s~~~---~~l~~~~~~l~~~l~~  150 (641)
                      .|++|.++...     |.++.+|||+.+++|||++|.||+.|  +++|++|||+||||.++   |+|++++++|++.||.
T Consensus       249 ~NdvP~~f~~~~~t~~~~~~~~RpEl~~s~vE~iAP~eYmlR--~P~Pavy~FliDVS~~a~ksG~L~~~~~slL~~LD~  326 (887)
T KOG1985|consen  249 VNDVPDDFDWDPLTGAYGDPYSRPELTSSVVEFIAPSEYMLR--PPQPAVYVFLIDVSISAIKSGYLETVARSLLENLDA  326 (887)
T ss_pred             hcCCcHHhhcCccccccCCcccCccccceeEEEecCcccccC--CCCCceEEEEEEeehHhhhhhHHHHHHHHHHHhhhc
Confidence            99999987533     66788999999999999999999976  67899999999999975   8999999999999999


Q ss_pred             CC--CCcEEEEEeecceEEEEEccCCccceeeEeeCCCCCcccchhhhcc-ccc-cccccchHhhHHHHHHHHHhhcCCC
Q 006547          151 VP--SGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELEDV-MPL-SQFLAPVETFKENITSALETLRPTT  226 (641)
Q Consensus       151 lp--~~~~VgiItfd~~V~~~~l~~~~~~~~~v~~~~~~~~~~~~dl~d~-~p~-~~~l~~~~~~~~~i~~lL~~L~~~~  226 (641)
                      ||  +++||||||||++||||+++++..++++         +++.|+||. +|. +++|+|+++||+.|+.+|+.|+++|
T Consensus       327 lpgd~Rt~igfi~fDs~ihfy~~~~~~~qp~m---------m~vsdl~d~flp~pd~lLv~L~~ck~~i~~lL~~lp~~F  397 (887)
T KOG1985|consen  327 LPGDPRTRIGFITFDSTIHFYSVQGDLNQPQM---------MIVSDLDDPFLPMPDSLLVPLKECKDLIETLLKTLPEMF  397 (887)
T ss_pred             CCCCCcceEEEEEeeceeeEEecCCCcCCCce---------eeeccccccccCCchhheeeHHHHHHHHHHHHHHHHHHH
Confidence            99  7899999999999999999988766655         346788884 555 7999999999999999999999999


Q ss_pred             ccccccccccCCCCcccCCcchHHHHHHHHHhhccccCCCcccceEEEEecCCCCCCCCccccccccCcccCCCcchhhc
Q 006547          227 SWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRA  306 (641)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~~l~~~~~~~~~~GkIi~F~sg~pt~GpG~l~~~~~~~~~~~~~~~~e~~  306 (641)
                      .|++.            .++|+|+||++|.++|++.|      |||++|++++|+.|.|+|+.||+.+..   +++++.+
T Consensus       398 ~~~~~------------t~~alGpALkaaf~li~~~G------Gri~vf~s~lPnlG~G~L~~rEdp~~~---~s~~~~q  456 (887)
T KOG1985|consen  398 QDTRS------------TGSALGPALKAAFNLIGSTG------GRISVFQSTLPNLGAGKLKPREDPNVR---SSDEDSQ  456 (887)
T ss_pred             hhccC------------cccccCHHHHHHHHHHhhcC------CeEEEEeccCCCCCccccccccccccc---cchhhhh
Confidence            88765            36899999999999999988      899999999999999999999765543   5677889


Q ss_pred             cCCCcchHHHHHHHHHHHcCcEEEEeeecCCccChhcccccccccceEEEEeCCCCCC------chhHHHHHHhccCccc
Q 006547          307 LLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDS------TLPQDIYRMLSRPYAF  380 (641)
Q Consensus       307 ~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~l~~l~~~TGG~v~~~~~~~~~------~l~~dl~~~l~~~~~~  380 (641)
                      ++.++++|||+||.+|++.||+||+|+++.+|.|+|+|+.|+++|||.+|||++|++.      +|.+||.|+|+|++||
T Consensus       457 lL~~~t~FYK~~a~~cs~~qI~VDlFl~s~qY~DlAsLs~LskySgG~~y~YP~f~~s~p~~~~Kf~~el~r~Ltr~~~f  536 (887)
T KOG1985|consen  457 LLSPATDFYKDLALECSKSQICVDLFLFSEQYTDLASLSCLSKYSGGQVYYYPSFDGSNPHDVLKFARELARYLTRKIGF  536 (887)
T ss_pred             ccCCCchHHHHHHHHhccCceEEEEEeecccccchhhhhccccccCceeEEccCCCCCCHHHHHHHHHHHHHHhhhhhhh
Confidence            9999999999999999999999999999999999999999999999999999999755      7899999999999999


Q ss_pred             eeEEEEecCCCceeeeeeeccccCCCCCcceeeeecCCCceEEEEEEEecCCCCCCCCCCCcEEEEEEeeeecccccccc
Q 006547          381 NCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARHTSEQPMLQIAFQYTVVVPPEELS  460 (641)
Q Consensus       381 ~a~~rvr~S~gl~v~~~~G~~~~~~~~~~~~~~~~~d~~~s~~~~~e~~~~~~l~~~~~~~~~iQ~a~lYt~~~g~~~~~  460 (641)
                      ||+||||||+|++++.+||||+.++  .|++.++++++|+++++.+++++  ++   .....+||+|++||...|+||+|
T Consensus       537 eaVmRiR~S~gl~~~~f~GnFF~RS--tDLla~~~v~~D~sy~~qisiEe--sl---~~~~~~fQvAlLyT~~~GERRIR  609 (887)
T KOG1985|consen  537 EAVMRIRCSTGLRMSSFFGNFFVRS--TDLLALPNVNPDQSYAFQISIEE--SL---TTGFCVFQVALLYTLSKGERRIR  609 (887)
T ss_pred             heeEEeeccccccccceecccccCc--HHHhcccCCCCCccceEEEEeeh--hc---CCceeEEEeeeeecccCCceeEE
Confidence            9999999999999999999999986  67888999999999999988875  44   36778899999999999999998


Q ss_pred             h------------hhHHH-------------HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCccccccc
Q 006547          461 S------------EGLGS-------------VILASLEQGVREGRMLLHDWLVILTAQYNEAFKLVQHNIGNSVTSQIDV  515 (641)
Q Consensus       461 ~------------~~~~~-------------~~~~~~~~~~~~~r~~l~~~lv~~l~~yr~~~~~~~~~~~~~~~~ql~~  515 (641)
                      +            +++++             |+.++++.++.|+|..|.+++++++.+|++.....     +    +...
T Consensus       610 V~T~~lpt~~sl~evY~saD~~AI~~lla~~Av~ksl~ssL~dardal~~~~~D~l~aYk~~~~~~-----~----~~~~  680 (887)
T KOG1985|consen  610 VHTLCLPTVSSLNEVYASADQEAIASLLAKKAVEKSLSSSLSDARDALTNAVVDILNAYKKLVSNQ-----N----GQGI  680 (887)
T ss_pred             EEEeeccccccHHHHHhhcCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhccc-----c----cCCc
Confidence            4            23332             67778888899999999999999999999987642     1    1112


Q ss_pred             cccCccccccHHHHHHHHhcCcccccCCCCCCchHHHHHHHHHccCChhhhhhhhccceEeeccCCCCC-C-------Cc
Q 006547          516 EFLQCPQLQRLPRLVFALLRNPLLRFHEEGVHPDYRIYLQCLFSALEPSSLQRAVYPLLTSYSTPDKQA-F-------PR  587 (641)
Q Consensus       516 ~~~lp~~lk~lP~~~~~L~Ks~~l~~~~~~~s~D~r~~~~~~l~~~~~~~~~~~~yP~L~~~~~~~~~~-~-------p~  587 (641)
                      .+.+|.+|++||+|+++|+|+++||.+. ++++|+|+|+++.++.+++..++++|||+||++|+++.++ .       +.
T Consensus       681 ~l~~p~~LrllPllvlALlK~~~fr~g~-~~~lD~R~~a~~~~~~lpl~~L~k~IYP~Lysl~~l~~ea~~~~~d~~~~~  759 (887)
T KOG1985|consen  681 TLSLPASLRLLPLLVLALLKHPAFRPGT-GTRLDYRAYAMCLMSTLPLKYLMKYIYPTLYSLHDLDDEAGLPIHDQTVVL  759 (887)
T ss_pred             ceecCcchhhhHHHHHHHhcCCcccCCC-CCCchHHHHHHHHhhcCCHHHHHhhhcccceeccccccccCcccccccccC
Confidence            4678999999999999999999999986 5999999999999999999999999999999999874421 1       11


Q ss_pred             -cccchhhhccCCCcEEEEeCCcEEEEEEcCCCCCCCCCCCCCCchhHHhhcc
Q 006547          588 -HSLSRAALITSGSPIFLLDAFTTIIVFYSSTADPTLPFPPPQDCKFSLISLG  639 (641)
Q Consensus       588 -~~L~~~~~~~~~~~iyLlD~~~~i~i~~g~~~~~~l~~~~~~~~~~~~~~~~  639 (641)
                       +.|..+++.++..|+||||+|..+++|+|++++|++.+.....+.++++-.|
T Consensus       760 p~~L~ltae~l~~~GlyL~D~g~~lfl~vg~~a~P~ll~~vfg~~~~adi~~~  812 (887)
T KOG1985|consen  760 PPPLNLTAELLSRRGLYLMDTGTTLFLWVGSNADPSLLFDVFGVSTLADIPIG  812 (887)
T ss_pred             CCccchHHHHhccCceEEEecCcEEEEEEcCCCCccccccccCcchHhhcccc
Confidence             3556666668999999999999999999999999999999999988887664

>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN00162 transport protein sec23; Provisional Back     alignment and domain information
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] Back     alignment and domain information
>PTZ00395 Sec24-related protein; Provisional Back     alignment and domain information
>KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] Back     alignment and domain information
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>cd01468 trunk_domain trunk domain Back     alignment and domain information
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] Back     alignment and domain information
>PF04815 Sec23_helical: Sec23/Sec24 helical domain; InterPro: IPR006900 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] Back     alignment and domain information
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF08033 Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterPro: IPR012990 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] Back     alignment and domain information
>PRK13685 hypothetical protein; Provisional Back     alignment and domain information
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme Back     alignment and domain information
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto) Back     alignment and domain information
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta Back     alignment and domain information
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>TIGR00868 hCaCC calcium-activated chloride channel protein 1 Back     alignment and domain information
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins Back     alignment and domain information
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins Back     alignment and domain information
>PF13768 VWA_3: von Willebrand factor type A domain Back     alignment and domain information
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain Back     alignment and domain information
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin) Back     alignment and domain information
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation Back     alignment and domain information
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A Back     alignment and domain information
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax Back     alignment and domain information
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell Back     alignment and domain information
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration Back     alignment and domain information
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity Back     alignment and domain information
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein Back     alignment and domain information
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01477 vWA_F09G8-8_type VWA F09G8 Back     alignment and domain information
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D Back     alignment and domain information
>PRK13406 bchD magnesium chelatase subunit D; Provisional Back     alignment and domain information
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional Back     alignment and domain information
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma Back     alignment and domain information
>smart00327 VWA von Willebrand factor (vWF) type A domain Back     alignment and domain information
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit Back     alignment and domain information
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism] Back     alignment and domain information
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions Back     alignment and domain information
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex Back     alignment and domain information
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases Back     alignment and domain information
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology Back     alignment and domain information
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain Back     alignment and domain information
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) [] Back     alignment and domain information
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only] Back     alignment and domain information
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family Back     alignment and domain information
>smart00262 GEL Gelsolin homology domain Back     alignment and domain information
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton] Back     alignment and domain information
>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair Back     alignment and domain information
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query641
1m2o_A 768 Crystal Structure Of The Sec23-Sar1 Complex Length 5e-15
3egd_B748 Crystal Structure Of The Mammalian Copii-Coat Prote 5e-15
2qtv_A 772 Structure Of Sec23-Sar1 Complexed With The Active F 6e-15
2nup_B753 Crystal Structure Of The Human Sec23a24A HETERODIME 6e-15
3eh1_A751 Crystal Structure Of The Human Copii-Coat Protein S 1e-14
1pcx_A 810 Crystal Structure Of The Copii Coat Subunit, Sec24, 7e-14
1m2v_B 926 Crystal Structure Of The Yeast Sec2324 HETERODIMER 1e-13
3eh2_A766 Crystal Structure Of The Human Copii-Coat Protein S 8e-13
2nup_A 769 Crystal Structure Of The Human Sec23a24A HETERODIME 5e-11
3eg9_A 764 Crystal Structure Of The Mammalian Copii-Coat Prote 6e-11
3efo_A 765 Crystal Structure Of The Mammalian Copii-Coat Prote 2e-10
3efo_B770 Crystal Structure Of The Mammalian Copii-Coat Prote 1e-09
>pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex Length = 768 Back     alignment and structure 
Iteration: 1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 109/440 (24%), Positives = 166/440 (37%), Gaps = 71/440 (16%)
Query: 2   AVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAP---VYGSDGHMLPRCENCYA 58
            VR T + FPS      ++ +P G   TP    DE   AP   V  S  H       C +
Sbjct: 11  GVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDELNVAPYNPVVCSGPH-------CKS 63
Query: 59  YFNTYCELE--QWAWTXXXXXXXXXXXXQAIARYTHPQSCAEMISSFIDLDLPLEGSEEE 116
             N YC ++    +W+            Q    YT+         S  ++ L L+ +  E
Sbjct: 64  ILNPYCVIDPRNSSWSCPICNSRNHLPPQ----YTN--------LSQENMPLELQSTTIE 111
Query: 117 TMQARPVYVA-----AVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDV 171
            +  +PV V       VDL+S  E L+  + ++  +L  +P  AL GL T+ + + L+D+
Sbjct: 112 YITNKPVTVPPIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDL 171
Query: 172 QGAIPVVKNVFI---------------------PSDTEDTLSLELEDVMP--LSQFLAPV 208
                   NVF                      P      L   +  V P  L++F  P+
Sbjct: 172 SSETIDRCNVFRGDREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPL 231
Query: 209 ETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFA 268
           E  +  +   LE L P   W   AG         +   G  L + SL   L   Y N   
Sbjct: 232 EQVEFKLNQLLENLSP-DQWSVPAGHRP------LRATGSALNIASLL--LQGCYKNI-- 280
Query: 269 LARVFAFLSGPPDHGAGQLDTRRYGEQYASKGE-DADRAL-LPEQTPFYKDLAAVAVQAG 326
            AR+  F SGP     G +      +   S  + D+D A    +   FY  +A      G
Sbjct: 281 PARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANG 340
Query: 327 VCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSR------PYAF 380
             VDIFA   +   ++ +K L+  +GG L L  +   +   Q   R+ ++        AF
Sbjct: 341 HTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAKDEEGYLKMAF 400
Query: 381 NCIMRLRTSSEFKPGHSYGH 400
           N  M ++TS + K     GH
Sbjct: 401 NGNMAVKTSKDLKVQGLIGH 420
>pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND BOUND To The Transport Signal Sequence Of Vesicular Stomatitis Virus Glycoprotein Length = 748 Back     alignment and structure
>pdb|2QTV|A Chain A, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 772 Back     alignment and structure
>pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 753 Back     alignment and structure
>pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b Length = 751 Back     alignment and structure
>pdb|1PCX|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24, Complexed With A Peptide From The Snare Protein Bet1 Length = 810 Back     alignment and structure
>pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER Length = 926 Back     alignment and structure
>pdb|3EH2|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24c Length = 766 Back     alignment and structure
>pdb|2NUP|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 769 Back     alignment and structure
>pdb|3EG9|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF MEMBRIN Length = 764 Back     alignment and structure
>pdb|3EFO|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF SYNTAXIN 5 Length = 765 Back     alignment and structure
>pdb|3EFO|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF SYNTAXIN 5 Length = 770 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query641
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 6e-88
2nut_A769 Protein transport protein SEC23A; human copii SEC2 3e-86
1m2o_A768 SEC23, protein transport protein SEC23, SEC23P; zi 1e-80
3efo_B770 SEC24 related gene family, member D; copii, coat p 4e-78
3eh2_A766 Protein transport protein SEC24C; copii-coat prote 3e-77
1pcx_A810 Protein transport protein SEC24; 2.50A {Saccharomy 1e-72
3eh1_A751 Protein transport protein SEC24B; copii coat prote 7e-69
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
 Score =  292 bits (749), Expect = 6e-88
 Identities = 122/677 (18%), Positives = 233/677 (34%), Gaps = 94/677 (13%)

Query: 3   VRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNT 62
           +R+T++  P +    + S LP+G+ + P+    ++   P    DG +  RC  C +Y N 
Sbjct: 182 IRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLI-VRCRRCRSYMNP 240

Query: 63  YCELEQWA--WTCSLCGSLNGLSSQAIARYTH----PQSCAEMISSFIDLDLPLEGSEEE 116
           +    +    W C+ C   N +  Q      +         E+  + ++   P E +  +
Sbjct: 241 FVTFIEQGRRWRCNFCRLANDVPMQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLRQ 300

Query: 117 TMQARPVYVAAVDLSSSE-EFLELTRSALQAALEAVP---SGALFGLATFSHKIGLYDVQ 172
              A   ++  V  SS +   L  T + L   L+++P         +    + I  + + 
Sbjct: 301 PPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIP 360

Query: 173 GAIPVVKNVFIPSDTEDTLSLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTA 232
                 +      +  D   LE   +   +  +  ++  ++NI + L  +          
Sbjct: 361 LDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLIT 420

Query: 233 GAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRY 292
             A             G A++S ++ +G   G      ++       P+ G G+L  R  
Sbjct: 421 NFA------------LGPALKSAYHLIGGVGG------KIIVVSGTLPNLGIGKLQRRNE 462

Query: 293 GEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESG 352
                +  E A   LL  Q  FYK+      +  + VD+F  + +Y D+ASL  LS  + 
Sbjct: 463 SGVVNTSKETA--QLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTA 520

Query: 353 GSLFLYSS------TDDSTLPQDIYRMLSRPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQ 406
           G    Y         D      +  + +S  +    +MR R S+  +    YGHFF    
Sbjct: 521 GQTHFYPGFSGKNPNDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGHFFNR-- 578

Query: 407 YENVQHIICCDSYATYAYDFDFANAAGFARHTSEQPMLQIAFQY------------TVVV 454
                  +C  S       + F          ++   +Q+A               T+ +
Sbjct: 579 ----SSDLCAFSTMPRDQSYLFEVNVDE-SIMADYCYVQVAVLLSLNNSQRRIRIITLAM 633

Query: 455 PPEELSSEGLGSV-------------ILASLEQGVREGRMLLHDWLVILTAQYNEAFKLV 501
           P  E  +E   S              +  +L   + + R+L++  +  + A Y +   + 
Sbjct: 634 PTTESLAEVYASADQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVVS 693

Query: 502 QHNIGNSVTSQIDVEFLQCPQLQRLPRLVFALLRNPLLRFHEEGVHPDYRIYLQCLFSAL 561
               G             C  L+  P L+ +L ++   R     V  D+R        +L
Sbjct: 694 NTAGGAP--------LRLCANLRMFPLLMHSLTKHMAFR--SGIVPSDHRASALNNLESL 743

Query: 562 EPSSLQRAVYPLLTS-YSTPDKQAFPRHSLSRAALITSGSP--------------IFLLD 606
               L + +YP + S +   D+   P  +    A  T   P              ++L+D
Sbjct: 744 PLKYLIKNIYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLID 803

Query: 607 AFTTIIVFYSSTADPTL 623
               + ++    A P L
Sbjct: 804 NGNELFLWMGGDAVPAL 820
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Length = 769 Back     alignment and structure
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Length = 768 Back     alignment and structure
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Length = 770 Back     alignment and structure
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Length = 766 Back     alignment and structure
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Length = 810 Back     alignment and structure
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Length = 751 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 641
d2qtva3271 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Sacchar 3e-50
d1pd0a3252 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Sacchar 6e-40
d1pd0a1107 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Sacchar 7e-14
d1pd0a2177 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast 7e-11
d1pd0a585 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccha 7e-05
>d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 271 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Trunk domain of Sec23/24
domain: Sec23
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  173 bits (439), Expect = 3e-50
 Identities = 64/280 (22%), Positives = 101/280 (36%), Gaps = 36/280 (12%)

Query: 122 PVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNV 181
           P++   VDL+S  E L+  + ++  +L  +P  AL GL T+ + + L+D+        NV
Sbjct: 3   PIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSETIDRCNV 62

Query: 182 FIPSDTEDTLSLE---------------------LEDVMPLSQ--FLAPVETFKENITSA 218
           F         +L                      +  V P S   F  P+E  +  +   
Sbjct: 63  FRGDREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQL 122

Query: 219 LETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSG 278
           LE L P   W   AG            R  G A+      L   Y N  A  R+  F SG
Sbjct: 123 LENLSPD-QWSVPAGH--------RPLRATGSALNIASLLLQGCYKNIPA--RIILFASG 171

Query: 279 PPDHGAGQLDTRRYGEQYASK--GEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITN 336
           P     G +      +   S    +        +   FY  +A      G  VDIFA   
Sbjct: 172 PGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCY 231

Query: 337 EYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSR 376
           +   ++ +K L+  +GG L L  +   +   Q   R+ ++
Sbjct: 232 DQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAK 271
>d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252 Back     information, alignment and structure
>d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 107 Back     information, alignment and structure
>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 177 Back     information, alignment and structure
>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query641
d2qtva3271 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 100.0
d1pd0a3252 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 100.0
d1pd0a585 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 99.84
d1pd0a1107 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 99.77
d1pd0a2177 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 99.75
d2qtva575 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 99.71
d2qtva1103 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 99.68
d2qtva2176 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 99.19
d1q0pa_209 Complement factor B domain {Human (Homo sapiens) [ 98.55
d1n3ya_189 Integrin alpha-x beta2 {Human (Homo sapiens) [TaxI 98.53
d1pd0a4173 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 98.51
d1shux_181 Capillary morphogenesis protein 2 domain {Human (H 98.48
d1atza_184 von Willebrand factor A3 domain, vWA3 {Human (Homo 98.42
d1ijba_202 von Willebrand factor A1 domain, vWA1 {Human (Homo 98.3
d1mf7a_194 Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha sub 98.3
d1pt6a_192 Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId 98.28
d1jeya2220 Ku70 subunit N-terminal domain {Human (Homo sapien 98.28
d1pd0a2177 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 98.27
d2qtva4142 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 98.2
d1jeyb2236 Ku80 subunit N-terminal domain {Human (Homo sapien 98.14
d1v7pc_193 Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId 98.13
d2qtva2176 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 98.1
d1mjna_179 Integrin CD11a/CD18 (Leukocyte function associated 98.09
d1tyeb2248 Integrin beta A domain {Human (Homo sapiens) [TaxI 97.7
d2fh1a3113 Gelsolin {Human (Homo sapiens) [TaxId: 9606]} 96.83
d1yvra2174 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African c 96.56
d1svya_102 Severin, domain 2 {Dictyostelium discoideum [TaxId 96.5
d2fh1a296 Gelsolin {Human (Homo sapiens) [TaxId: 9606]} 96.18
d1j72a2116 Macrophage capping protein Cap G {Human (Homo sapi 95.92
d1j72a3107 Macrophage capping protein Cap G {Human (Homo sapi 94.81
d1kcqa_104 Gelsolin {Human (Homo sapiens) [TaxId: 9606]} 94.65
d1d0na3121 Gelsolin {Horse (Equus caballus) [TaxId: 9796]} 94.55
>d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Trunk domain of Sec23/24
domain: Sec23
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=353.72  Aligned_cols=246  Identities=26%  Similarity=0.386  Sum_probs=209.5

Q ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEECCCCCCCEEEEEECCCCC-----------
Q ss_conf             995799999788894689999999999997099996999986163389997149966112475079988-----------
Q 006547          120 ARPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTE-----------  188 (641)
Q Consensus       120 ~~p~~vFvID~s~~~~~l~~~~~~l~~~l~~l~~~~~vglItf~~~V~~~~l~~~~~~~~~v~~~~~~~-----------  188 (641)
                      .||+|+|+||+|.++.+++.++++|+++|+.+|++++|||||||+.||||+++.......+++.+....           
T Consensus         1 ~Pp~yvFvIDvs~~a~~~~~l~~~l~~~l~~lp~~~~VgiITfd~~v~~y~l~~~~~~~~~v~~g~~~~~~~~~~~~~~~   80 (271)
T d2qtva3           1 VPPIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEMLTG   80 (271)
T ss_dssp             SCCEEEEEEECCSCHHHHHHHHHHHHHHHTTSCTTCEEEEEEESSEEEEEECSCSSCCEEEEEESSSCCCHHHHHHHHHC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEECCCCCCCCCEECCCCCCCCHHHHHHHHHC
T ss_conf             99889999988766788999999999999729998789999979989999788876763302257644578899877511


Q ss_pred             ----------CCCCHHHHCC-CCC-CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             ----------5430001002-654-6564355766999999997606898642234555677775568763689999999
Q 006547          189 ----------DTLSLELEDV-MPL-SQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLF  256 (641)
Q Consensus       189 ----------~~~~~dl~d~-~p~-~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~  256 (641)
                                ..++.+++++ .|. ++|+++++++++.|+++|++|++. .|..+++        .+++||+|+||++|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~e~~~~i~~lL~~L~~~-~~~~~~~--------~~~~~~~G~Al~~A~  151 (271)
T d2qtva3          81 QKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPD-QWSVPAG--------HRPLRATGSALNIAS  151 (271)
T ss_dssp             CC-----------------CCTTCGGGGSEEHHHHHHHHHHHHHHCCCC-CCCCCTT--------BCCCCCHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-CCCCCCC--------CCCCCCHHHHHHHHH
T ss_conf             3556655653345565322467762222005899999999999973017-6667788--------776543378999999


Q ss_pred             HHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC-CH-HHCCCCCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             964100389753116999833899999975435656674469885-10-0015987406999999999883718889441
Q 006547          257 NYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYASKGE-DA-DRALLPEQTPFYKDLAAVAVQAGVCVDIFAI  334 (641)
Q Consensus       257 ~ll~~~g~~~~~~gkIi~F~~g~pt~GpG~i~~~~~~~~~~~~~~-~~-e~~~~~~~~~fY~~la~~~~~~~isvDif~~  334 (641)
                      .+|++..++.  ||||++|++|+||+|||+|+.+++++.+|++.+ ++ +.++++++++||++||.+|++++|+||+|++
T Consensus       152 ~ll~~~~~~~--gGkI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~~isvDlF~~  229 (271)
T d2qtva3         152 LLLQGCYKNI--PARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAG  229 (271)
T ss_dssp             HHHHHHCTTS--CEEEEEEESSCCCSSSSCSSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred             HHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEE
T ss_conf             9998622689--82899994789987884242555444457755223435664215899999999999878947999981


Q ss_pred             CCCCCCHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCC
Q ss_conf             599547120100113551089995789978414899998225
Q 006547          335 TNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSR  376 (641)
Q Consensus       335 ~~~~~~i~~l~~l~~~TGG~i~~y~~~~~~~l~~dl~~~l~~  376 (641)
                      +.+++|+++|++|++.|||.+++|++|+.+.|+++|+|++.|
T Consensus       230 s~~~~dl~~l~~l~~~TGG~v~~~~~F~~~~f~~~l~r~~~r  271 (271)
T d2qtva3         230 CYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAK  271 (271)
T ss_dssp             CSSCCSHHHHTHHHHTTTCCEEEESCTTSHHHHHHHHHTTCB
T ss_pred             CCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCC
T ss_conf             476579598876876078269983896879999999998459
>d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} Back     information, alignment and structure